Psyllid ID: psy6613

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510
Protein Sequence
MVVGSAESNFSQPSSDLSLDEEKETLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQARNPKLYSSKTSSTSNLGALSSDAPSPGMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAPPQPLTLLPPRQLTAHQSVVIPPSPSMGSAESNFSQPSSDLSLDEEKETLRREKERQALSQLEKARVTDDNESIGNSRAGKNTLTTPTTKEKKKIFFKKQETTTPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQVYYPLI
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccEEEEcccccEEEccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEccccHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHccccccEEEEEEEccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHcccccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHcHHHHHHHHHHHHHHHHHHHccccEEEEEEEEcccccccccccccccEEEEEcHHHHHHEEEccccccEEEHEEcccccEEEccccHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEccHHHHHHcccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHccEEEEcccccccHHHHHHcccccEEEEEEEccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHcHEEEcHcHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccHHcccccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEEEEHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mvvgsaesnfsqpssdlsldEEKETLRREKERQALSQLEKARAKNVAFAVRTNvkydgsidddspvhgyavSFDIHEFLHIkekydsnwwIGRLVKegsecgfipspvklENLRLQqtqarnpklyssktsstsnlgalssdapspgmIIITRVTADISLAKRslmsnpskraimersnsrssVLTEVQTEIERVYELASTLQLVVLDcdtinhpsqlaktnlspcivylkisSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWrathppaappqpltllpprqltahqsvvippspsmgsaesnfsqpssdlsldEEKETLRREKERQALSQLEKArvtddnesignsragkntlttpttkEKKKIFFKkqetttpydvvpsmrpvvlvgpslkgyevTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRslmsnpskraimersnsrssVLTEVQTEIERVYELASTLQVYYPLI
Flexible Loop (DISEMBL)
mvvgsaesnfsqpssdlsldeEKETLRREKERQALSQlekaraknvafavRTNVkydgsidddspVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTqarnpklyssktsstsnlgalssdapspgMIIITRVTADISLAKrslmsnpskraimersnsrssvLTEVQTEIERVYELASTLQLVVLDCDTINHPSqlaktnlspCIVYLKISSPKVLQRLIKSrgksqtrhLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAPPQPLTLLPPRQLTAHQSVVIPPSPSMGSAESnfsqpssdlslDEEKETLRREKERqalsqlekarvtddnesignsragkntlttpttkekkkiffkkqetttpydvvpsmrpVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITrvtadislakrslmsnpskraimersnsrssvlTEVQTEIERVYELASTLQVYYPLI
Low Complexity Region (SEG)
MVVGSAESNFSQPSSDLSLDeeketlrrekerQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQARNPKLYSSKTSSTSNLGALSSDAPSPGMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWrathppaappqpltllpprqltaHQSVVIPPSPSMGSAESNFSQPSSDLSLDeeketlrrekerQALSQLEKARVTDDNESIGNSRAGkntlttpttkekkkiffkkqetttPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQVYYPLI
Disordered region (IsUnstruct)
********************************************NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL*************************************MIIITRVTADIS**************************TEVQTEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKS*****TRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWR*****************************************************************************************************IFFKKQETTTPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLA**************************VQTEIERVYELASTLQVYYP**
Disordered Region (DISOPRED)
**********************************************AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENL********************************************ISLAK******************************ERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQR****************MVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATH**************************************************************************************************************DVVPSMRPVVLVGPSLKG*EVTDMMQKALFDFLKHRFEGRIIITRVTADISLAK***********************TEVQTEIERVYELASTLQVYYPLI
Disordered Region (DISEMBL)
******************************************AKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQT********************LSSDAPSPGMIIITRVTADISLAKRSLMSNPSKRA**************VQTEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAPPQPLTLLPPRQLTAHQSVVIPPS*************************************************IGNSRAGKNTLTTPTTKEKKKIFFKKQETTTPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSLMSNPSKRA**************VQTEIERVYELASTLQVYYPLI
Disordered Region (DISPRO)
*************************LRREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQA***********************PSPGMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPP*************************************************************************************************FFKKQETTTPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQVYYPLI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVGSAESNFSQPSSDLSLDEEKETLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQARNPKLYSSKTSSTSNLGALSSDAPSPGMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAPPQPLTLLPPRQLTAHQSVVIPPSPSMGSAESNFSQPSSDLSLDEEKETLRREKERQALSQLEKARVTDDNESIGNSRAGKNTLTTPTTKEKKKIFFKKQETTTPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQVYYPLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	510	2.2.26 [Sep-21-2011]
P54286	477	Voltage-dependent L-type	yes	N/A	0.611	0.654	0.542	1e-102
P54284	484	Voltage-dependent L-type	yes	N/A	0.611	0.644	0.542	1e-102
P54287	484	Voltage-dependent L-type	yes	N/A	0.611	0.644	0.540	1e-101
P54285	484	Voltage-dependent L-type	yes	N/A	0.611	0.644	0.540	1e-101
Q9MZL3	484	Voltage-dependent L-type	yes	N/A	0.619	0.652	0.543	1e-100
Q08289	660	Voltage-dependent L-type	no	N/A	0.315	0.243	0.791	2e-71
P54288	632	Voltage-dependent L-type	no	N/A	0.411	0.332	0.637	3e-71
Q9MZL5	603	Voltage-dependent L-type	no	N/A	0.315	0.266	0.791	4e-71
Q8CC27	655	Voltage-dependent L-type	no	N/A	0.350	0.273	0.728	2e-70
Q8VGC3	655	Voltage-dependent L-type	no	N/A	0.315	0.245	0.792	2e-70

>sp|P54286|CACB3_RABIT Voltage-dependent L-type calcium channel subunit beta-3 OS=Oryctolagus cuniculus GN=CACNB3 PE=2 SV=1

 Score =  372 bits (954), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/374 (54%), Positives = 252/374 (67%), Gaps = 62/374 (16%)

Query: 3   VGSAESNFSQPS--SDLSLDEEKETLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSI 60
            GSA+S  S+PS  SD+SL+E++E+ RRE E QA  QLE+A+ K VAFAVRTNV Y G +
Sbjct: 15  AGSADSYTSRPSLDSDVSLEEDRESARREVESQAQQQLERAKHKPVAFAVRTNVSYCGVL 74

Query: 61  DDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQ- 119
           D++ PV G  ++F+  +FLHIKEKY ++WWIGRLVKEG +  FIPSP +LE++RL+Q Q 
Sbjct: 75  DEECPVQGSGINFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQRLESIRLKQEQK 134

Query: 120 ARNPKLYSSKTSSTSNLGALSSDAPS------------------PGM------------- 148
           AR     S   SS S++G   S  PS                  P M             
Sbjct: 135 ARR----SGNPSSLSDIGNRRSPPPSLAKQKQKQAEHVPPYDVVPSMRPVVLVGPSLKGY 190

Query: 149 ---------------------IIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTE 187
                                I ITRVTAD+SLAKRS+++NP KR I+ERS++RSS+  E
Sbjct: 191 EVTDMMQKALFDFLKHRFDGRISITRVTADLSLAKRSVLNNPGKRTIIERSSARSSI-AE 249

Query: 188 VQTEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGK 247
           VQ+EIER++ELA +LQLVVLD DTINHP+QLAKT+L+P IV++K+SSPKVLQRLI+SRGK
Sbjct: 250 VQSEIERIFELAKSLQLVVLDADTINHPAQLAKTSLAPIIVFVKVSSPKVLQRLIRSRGK 309

Query: 248 SQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAPPQP 307
           SQ +HL VQM+A +KL QCP E FDVILDENQLEDACEH+AEYLE YWRATH PA  P P
Sbjct: 310 SQMKHLTVQMMAYDKLVQCPPESFDVILDENQLEDACEHLAEYLEVYWRATHHPA--PGP 367

Query: 308 LTLLPPRQLTAHQS 321
             L PP  +   QS
Sbjct: 368 GLLGPPSAIPGLQS 381

The beta subunit of voltage-dependent calcium channels contributes to the function of the calcium channel by increasing peak calcium current, shifting the voltage dependencies of activation and inactivation, modulating G protein inhibition and controlling the alpha-1 subunit membrane targeting.
Oryctolagus cuniculus (taxid: 9986)

>sp|P54284|CACB3_HUMAN Voltage-dependent L-type calcium channel subunit beta-3 OS=Homo sapiens GN=CACNB3 PE=1 SV=1

 Score =  371 bits (952), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/374 (54%), Positives = 252/374 (67%), Gaps = 62/374 (16%)

Query: 3   VGSAESNFSQPS--SDLSLDEEKETLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSI 60
            GSA+S  S+PS  SD+SL+E++E+ RRE E QA  QLE+A+ K VAFAVRTNV Y G +
Sbjct: 15  AGSADSYTSRPSLDSDVSLEEDRESARREVESQAQQQLERAKHKPVAFAVRTNVSYCGVL 74

Query: 61  DDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQ- 119
           D++ PV G  V+F+  +FLHIKEKY ++WWIGRLVKEG +  FIPSP +LE++RL+Q Q 
Sbjct: 75  DEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQRLESIRLKQEQK 134

Query: 120 ARNPKLYSSKTSSTSNLGALSSDAPS------------------PGM------------- 148
           AR     S   SS S++G   S  PS                  P M             
Sbjct: 135 ARR----SGNPSSLSDIGNRRSPPPSLAKQKQKQAEHVPPYDVVPSMRPVVLVGPSLKGY 190

Query: 149 ---------------------IIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTE 187
                                I ITRVTAD+SLAKRS+++NP KR I+ERS++RSS+  E
Sbjct: 191 EVTDMMQKALFDFLKHRFDGRISITRVTADLSLAKRSVLNNPGKRTIIERSSARSSI-AE 249

Query: 188 VQTEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGK 247
           VQ+EIER++ELA +LQLVVLD DTINHP+QLAKT+L+P IV++K+SSPKVLQRLI+SRGK
Sbjct: 250 VQSEIERIFELAKSLQLVVLDADTINHPAQLAKTSLAPIIVFVKVSSPKVLQRLIRSRGK 309

Query: 248 SQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAPPQP 307
           SQ +HL VQM+A +KL QCP E FDVILDENQLEDACEH+AEYLE YWRATH PA  P P
Sbjct: 310 SQMKHLTVQMMAYDKLVQCPPESFDVILDENQLEDACEHLAEYLEVYWRATHHPA--PGP 367

Query: 308 LTLLPPRQLTAHQS 321
             L PP  +   Q+
Sbjct: 368 GLLGPPSAIPGLQN 381

The beta subunit of voltage-dependent calcium channels contributes to the function of the calcium channel by increasing peak calcium current, shifting the voltage dependencies of activation and inactivation, modulating G protein inhibition and controlling the alpha-1 subunit membrane targeting.

Homo sapiens (taxid: 9606)

>sp|P54287|CACB3_RAT Voltage-dependent L-type calcium channel subunit beta-3 OS=Rattus norvegicus GN=Cacnb3 PE=1 SV=1

 Score =  370 bits (950), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/374 (54%), Positives = 252/374 (67%), Gaps = 62/374 (16%)

Query: 3   VGSAESNFSQPS--SDLSLDEEKETLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSI 60
            GSA+S  S+PS  SD+SL+E++E+ RRE E QA  QLE+A+ K VAFAVRTNV Y G +
Sbjct: 15  AGSADSYTSRPSLDSDVSLEEDRESARREVESQAQQQLERAKHKPVAFAVRTNVSYCGVL 74

Query: 61  DDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQ- 119
           D++ PV G  V+F+  +FLHIKEKY ++WWIGRLVKEG +  FIPSP +LE++RL+Q Q 
Sbjct: 75  DEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQRLESIRLKQEQK 134

Query: 120 ARNPKLYSSKTSSTSNLGALSSDAPS------------------PGM------------- 148
           AR     S   SS S++G   S  PS                  P M             
Sbjct: 135 ARR----SGNPSSLSDIGNRRSPPPSLAKQKQKQAEHVPPYDVVPSMRPVVLVGPSLKGY 190

Query: 149 ---------------------IIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTE 187
                                I ITRVTAD+SLAKRS+++NP KR I+ERS++RSS+  E
Sbjct: 191 EVTDMMQKALFDFLKHRFDGRISITRVTADLSLAKRSVLNNPGKRTIIERSSARSSI-AE 249

Query: 188 VQTEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGK 247
           VQ+EIER++ELA +LQLVVLD DTINHP+QLAKT+L+P IV++K+SSPKVLQRLI+SRGK
Sbjct: 250 VQSEIERIFELAKSLQLVVLDADTINHPAQLAKTSLAPIIVFVKVSSPKVLQRLIRSRGK 309

Query: 248 SQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAPPQP 307
           SQ +HL VQM+A +KL QCP E FDVILDENQL+DACEH+AEYLE YWRATH PA  P P
Sbjct: 310 SQMKHLTVQMMAYDKLVQCPPESFDVILDENQLDDACEHLAEYLEVYWRATHHPA--PGP 367

Query: 308 LTLLPPRQLTAHQS 321
             L PP  +   Q+
Sbjct: 368 GMLGPPSAIPGLQN 381

The beta subunit of voltage-dependent calcium channels contributes to the function of the calcium channel by increasing peak calcium current, shifting the voltage dependencies of activation and inactivation, modulating G protein inhibition and controlling the alpha-1 subunit membrane targeting.

Rattus norvegicus (taxid: 10116)

>sp|P54285|CACB3_MOUSE Voltage-dependent L-type calcium channel subunit beta-3 OS=Mus musculus GN=Cacnb3 PE=2 SV=2

 Score =  369 bits (948), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/374 (54%), Positives = 251/374 (67%), Gaps = 62/374 (16%)

Query: 3   VGSAESNFSQPS--SDLSLDEEKETLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSI 60
            GSA+S  S+PS  SD+SL+E++E+ RRE E QA  QLE+A+ K VAFAVRTNV Y G +
Sbjct: 15  AGSADSYTSRPSLDSDVSLEEDRESARREVESQAQQQLERAKHKPVAFAVRTNVSYCGVL 74

Query: 61  DDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQ- 119
           D++ PV G  V+F+  +FLHIKEKY ++WWIGRLVKEG +  FIPSP +LE++RL+Q Q 
Sbjct: 75  DEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQRLESIRLKQEQK 134

Query: 120 ARNPKLYSSKTSSTSNLGALSSDAPS------------------PGM------------- 148
           AR     S   SS  ++G   S  PS                  P M             
Sbjct: 135 ARR----SGNPSSLGDIGNRRSPPPSLAKQKQKQAEHVPPYDVVPSMRPVVLVGPSLKGY 190

Query: 149 ---------------------IIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTE 187
                                I ITRVTAD+SLAKRS+++NP KR I+ERS++RSS+  E
Sbjct: 191 EVTDMMQKALFDFLKHRFDGRISITRVTADLSLAKRSVLNNPGKRTIIERSSARSSI-AE 249

Query: 188 VQTEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGK 247
           VQ+EIER++ELA +LQLVVLD DTINHP+QLAKT+L+P IV++K+SSPKVLQRLI+SRGK
Sbjct: 250 VQSEIERIFELAKSLQLVVLDADTINHPAQLAKTSLAPIIVFVKVSSPKVLQRLIRSRGK 309

Query: 248 SQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAPPQP 307
           SQ +HL VQM+A +KL QCP E FDVILDENQLEDACEH+AEYLE YWRATH PA  P P
Sbjct: 310 SQMKHLTVQMMAYDKLVQCPPESFDVILDENQLEDACEHLAEYLEVYWRATHHPA--PGP 367

Query: 308 LTLLPPRQLTAHQS 321
             L PP  +   Q+
Sbjct: 368 GLLGPPSAIPGLQN 381

The beta subunit of voltage-dependent calcium channels contributes to the function of the calcium channel by increasing peak calcium current, shifting the voltage dependencies of activation and inactivation, modulating G protein inhibition and controlling the alpha-1 subunit membrane targeting.

Mus musculus (taxid: 10090)

>sp|Q9MZL3|CACB3_BOVIN Voltage-dependent L-type calcium channel subunit beta-3 OS=Bos taurus GN=CACNB3 PE=2 SV=2

 Score =  366 bits (940), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/370 (54%), Positives = 251/370 (67%), Gaps = 54/370 (14%)

Query: 3   VGSAESNFSQPS--SDLSLDEEKETLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSI 60
            GSA+S  S+PS  SD+SL+E++E+ RRE E QA  QLE+A+ K VAFAVRTNV Y G +
Sbjct: 15  AGSADSYTSRPSLDSDVSLEEDRESARREVESQAQQQLERAKHKPVAFAVRTNVSYCGVL 74

Query: 61  DDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRL-QQTQ 119
           D++ PV G  V+F+  +FLHIKEKY ++WWIGRLVKEG +  FIPSP +LE++RL Q+ +
Sbjct: 75  DEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQRLESIRLKQEQK 134

Query: 120 AR---NPKLYSSKTSSTSNLGALSSD-----------------------APS-------- 145
           AR   NP   S   S  S   +L+                          PS        
Sbjct: 135 ARRSGNPSSLSDIGSRRSPPPSLAKQKQKQAEHIPPYDVVPSMRPVVLVGPSLKGYEVTD 194

Query: 146 --------------PGMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTE 191
                          G I ITRVTAD+SLAKRS+++NP KR I+ERS++RSS+  EVQ+E
Sbjct: 195 MMQKALFDFLKHRFDGRISITRVTADLSLAKRSVLNNPGKRTIIERSSARSSI-AEVQSE 253

Query: 192 IERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTR 251
           IER++ELA +LQLVVLD DTINHP+QLAKT+L+P IV++K+SSPKVLQRLI+SRGKSQ +
Sbjct: 254 IERIFELAKSLQLVVLDADTINHPAQLAKTSLAPIIVFVKVSSPKVLQRLIRSRGKSQMK 313

Query: 252 HLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAPPQPLTLL 311
           HL VQM+A +KL QCP E FDVILDENQLEDACEH+AEYLE YWRATH PA  P P  L 
Sbjct: 314 HLTVQMMAYDKLVQCPPESFDVILDENQLEDACEHLAEYLEVYWRATHHPA--PGPGLLG 371

Query: 312 PPRQLTAHQS 321
           PP  +   Q+
Sbjct: 372 PPSAIPGLQN 381

The beta subunit of voltage-dependent calcium channels contributes to the function of the calcium channel by increasing peak calcium current, shifting the voltage dependencies of activation and inactivation, modulating G protein inhibition and controlling the alpha-1 subunit membrane targeting.

Bos taurus (taxid: 9913)

>sp|Q08289|CACB2_HUMAN Voltage-dependent L-type calcium channel subunit beta-2 OS=Homo sapiens GN=CACNB2 PE=1 SV=3

 Score =  270 bits (690), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 129/163 (79%), Positives = 150/163 (92%), Gaps = 2/163 (1%)

Query: 147 GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVV 206
           G I ITRVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQLVV
Sbjct: 314 GRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLVV 372

Query: 207 LDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQC 266
           LD DTINHP+QL+KT+L+P IVY+KISSPKVLQRLIKSRGKSQ +HLNVQMVAA+KLAQC
Sbjct: 373 LDADTINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQC 432

Query: 267 PQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAP-PQPL 308
           P E+FDVILDENQLEDACEH+A+YLEAYW+ATHPP++  P PL
Sbjct: 433 PPELFDVILDENQLEDACEHLADYLEAYWKATHPPSSSLPNPL 475

The beta subunit of voltage-dependent calcium channels contributes to the function of the calcium channel by increasing peak calcium current, shifting the voltage dependencies of activation and inactivation, modulating G protein inhibition and controlling the alpha-1 subunit membrane targeting.

Homo sapiens (taxid: 9606)

>sp|P54288|CACB2_RABIT Voltage-dependent L-type calcium channel subunit beta-2 OS=Oryctolagus cuniculus GN=CACNB2 PE=1 SV=1

 Score =  270 bits (689), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 144/226 (63%), Positives = 173/226 (76%), Gaps = 16/226 (7%)

Query: 147 GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVV 206
           G I ITRVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQLVV
Sbjct: 286 GRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLVV 344

Query: 207 LDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQC 266
           LD DTINHP+QL+KT+L+P +VY+KISSPKVLQRLIKSRGKSQ +HLNVQMVAA+KLAQC
Sbjct: 345 LDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQC 404

Query: 267 PQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAP-PQPLTLLPPRQLTAHQSVVIP 325
           P E+FDVILDENQLEDACEH+A+YLEAYW+ATHPP++  P PL     R L    +  +P
Sbjct: 405 PPELFDVILDENQLEDACEHLADYLEAYWKATHPPSSNLPNPLL---SRTLA---TSALP 458

Query: 326 PSP--------SMGSAESNFSQPSSDLSLDEEKETLRREKERQALS 363
            SP        S G   ++ S P+   S  EE+  L   K+ Q  S
Sbjct: 459 VSPTLASNSQGSQGDQRTDRSAPARSASQAEEEPCLEPAKKSQHRS 504

The beta subunit of voltage-dependent calcium channels contributes to the function of the calcium channel by increasing peak calcium current, shifting the voltage dependencies of activation and inactivation, modulating G protein inhibition and controlling the alpha-1 subunit membrane targeting.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q9MZL5|CACB2_BOVIN Voltage-dependent L-type calcium channel subunit beta-2 OS=Bos taurus GN=CACNB2 PE=2 SV=1

 Score =  269 bits (687), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 129/163 (79%), Positives = 150/163 (92%), Gaps = 2/163 (1%)

Query: 147 GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVV 206
           G I ITRVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQLVV
Sbjct: 259 GRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLVV 317

Query: 207 LDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQC 266
           LD DTINHP+QL+KT+L+P IVY+KISSPKVLQRLIKSRGKSQ +HLNVQMVAA+KLAQC
Sbjct: 318 LDADTINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQC 377

Query: 267 PQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAP-PQPL 308
           P E+FDVILDENQLEDACEH+A+YLEAYW+ATHPP++  P PL
Sbjct: 378 PPELFDVILDENQLEDACEHLADYLEAYWKATHPPSSSLPNPL 420

The beta subunit of voltage-dependent calcium channels contributes to the function of the calcium channel by increasing peak calcium current, shifting the voltage dependencies of activation and inactivation, modulating G protein inhibition and controlling the alpha-1 subunit membrane targeting.

Bos taurus (taxid: 9913)

>sp|Q8CC27|CACB2_MOUSE Voltage-dependent L-type calcium channel subunit beta-2 OS=Mus musculus GN=Cacnb2 PE=2 SV=1

 Score =  267 bits (682), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 137/188 (72%), Positives = 159/188 (84%), Gaps = 9/188 (4%)

Query: 147 GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVV 206
           G I ITRVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQLVV
Sbjct: 310 GRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLVV 368

Query: 207 LDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQC 266
           LD DTINHP+QL+KT+L+P IVY+KISSPKVLQRLIKSRGKSQ +HLNVQMVAA+KLAQC
Sbjct: 369 LDADTINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQC 428

Query: 267 -PQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAP-PQPLTLLPPRQLTAHQSVVI 324
            PQE FDVILDENQLEDACEH+A+YLEAYW+ATHPP+   P PL     R L    S  +
Sbjct: 429 PPQESFDVILDENQLEDACEHLADYLEAYWKATHPPSGNLPNPLL---SRTLA---SSTL 482

Query: 325 PPSPSMGS 332
           P SP++ S
Sbjct: 483 PLSPTLAS 490

The beta subunit of voltage-dependent calcium channels contributes to the function of the calcium channel by increasing peak calcium current, shifting the voltage dependencies of activation and inactivation, modulating G protein inhibition and controlling the alpha-1 subunit membrane targeting.

Mus musculus (taxid: 10090)

>sp|Q8VGC3|CACB2_RAT Voltage-dependent L-type calcium channel subunit beta-2 OS=Rattus norvegicus GN=Cacnb2 PE=1 SV=2

 Score =  266 bits (681), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 130/164 (79%), Positives = 150/164 (91%), Gaps = 3/164 (1%)

Query: 147 GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVV 206
           G I ITRVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQLVV
Sbjct: 310 GRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLVV 368

Query: 207 LDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQC 266
           LD DTINHP+QL+KT+L+P IVY+KISSPKVLQRLIKSRGKSQ +HLNVQMVAA+KLAQC
Sbjct: 369 LDADTINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQC 428

Query: 267 -PQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAP-PQPL 308
            PQE FDVILDENQLEDACEH+A+YLEAYW+ATHPP++  P PL
Sbjct: 429 PPQESFDVILDENQLEDACEHLADYLEAYWKATHPPSSNLPNPL 472

The beta subunit of voltage-dependent calcium channels contributes to the function of the calcium channel by increasing peak calcium current, shifting the voltage dependencies of activation and inactivation, modulating G protein inhibition and controlling the alpha-1 subunit membrane targeting.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	510
348534909	515	PREDICTED: voltage-dependent L-type calc	0.590	0.584	0.606	1e-109
390981011	339	Chain A, Crystal Structure Of The Voltag	0.582	0.876	0.623	1e-109
390981014	337	Chain A, Crystal Structure Of The Voltag	0.582	0.881	0.623	1e-109
395539976	562	PREDICTED: voltage-dependent L-type calc	0.582	0.528	0.597	1e-108
119580962	471	calcium channel, voltage-dependent, beta	0.596	0.645	0.583	1e-108
395539974	613	PREDICTED: voltage-dependent L-type calc	0.578	0.481	0.609	1e-108
49259232	337	Chain A, Structural Analysis Of The Volt	0.582	0.881	0.620	1e-108
348521380	390	PREDICTED: voltage-dependent L-type calc	0.6	0.784	0.550	1e-105
410899304	390	PREDICTED: voltage-dependent L-type calc	0.6	0.784	0.544	1e-104
47228723	370	unnamed protein product [Tetraodon nigro	0.6	0.827	0.542	1e-104

>gi|348534909|ref|XP_003454944.1| PREDICTED: voltage-dependent L-type calcium channel subunit beta-4-like isoform 2 [Oreochromis niloticus]

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/351 (60%), Positives = 257/351 (73%), Gaps = 50/351 (14%)

Query: 4   GSAESNFSQPS-SDLSLDEEKETLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDD 62
           GSA+S  S+PS SD+SL+EEKE  R+E+E+QA  QLE+A+ K VAFAVRTNV Y G++D+
Sbjct: 50  GSADSYTSRPSDSDVSLEEEKEGGRQEREQQATVQLERAKTKAVAFAVRTNVSYCGALDE 109

Query: 63  DSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQARN 122
           D PV G AVSFD  +FLHIKEKY+++WWIGRLVKEG + GFIPSP+KLEN+RLQQ Q R 
Sbjct: 110 DVPVAGTAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCDIGFIPSPLKLENIRLQQEQKRG 169

Query: 123 PKLYSSKTSSTSNLGALSSDA--------------------------PS----------- 145
                S  +S+S+LG + S                            PS           
Sbjct: 170 RFPGKSSGNSSSSLGEMVSSGKQKQKVAEHVPPYDVVPSMRPVVLVGPSLKGYEVTDMMQ 229

Query: 146 -----------PGMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIER 194
                       G I ITRVTADISLAKRS+++NPSKRAI+ERSN+RSS L EVQ+EIER
Sbjct: 230 KALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSS-LAEVQSEIER 288

Query: 195 VYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLN 254
           ++ELA +LQLVVLD DTINHP+QL KT+L+P IV++K+SSPKVLQRLIKSRGKSQ++HLN
Sbjct: 289 IFELARSLQLVVLDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLN 348

Query: 255 VQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAPP 305
           VQ+VAAEKLAQCP EMFD+ILDENQLEDACEH+AEYLEAYWRATH   + P
Sbjct: 349 VQLVAAEKLAQCPSEMFDIILDENQLEDACEHLAEYLEAYWRATHTSLSMP 399

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390981011|pdb|4DEX|A Chain A, Crystal Structure Of The Voltage Dependent Calcium Channel Beta-2 Subunit In Complex With The Cav2.2 I-Ii Linker

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/337 (62%), Positives = 254/337 (75%), Gaps = 40/337 (11%)

Query: 11  SQPS-SDLSLDEEKETLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGY 69
           S+PS SD+SL+E++E +RRE ERQA +QLEKA+ K VAFAVRTNV Y  + +DD PV G 
Sbjct: 3   SRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGM 62

Query: 70  AVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQ-ARNPKLYSS 128
           A+SF+  +FLH+KEK++++WWIGRLVKEG E GFIPSPVKLEN+RLQ  Q A+  KL+S 
Sbjct: 63  AISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQRAKEFKLHSK 122

Query: 129 --------KTSSTSNLGALSSDAP----SP------------------------GMIIIT 152
                   KT  T     + S  P     P                        G I IT
Sbjct: 123 EKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT 182

Query: 153 RVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTI 212
           RVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQLVVLD DTI
Sbjct: 183 RVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLVVLDADTI 241

Query: 213 NHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFD 272
           NHP+QL+KT+L+P +VY+KISSPKVLQRLIKSRGKSQ +HLNVQMVAA+KLAQCP E+FD
Sbjct: 242 NHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPELFD 301

Query: 273 VILDENQLEDACEHIAEYLEAYWRATHPPAAP-PQPL 308
           VILDENQLEDACEH+A+YLEAYW+ATHPP++  P PL
Sbjct: 302 VILDENQLEDACEHLADYLEAYWKATHPPSSNLPNPL 338

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390981014|pdb|4DEY|A Chain A, Crystal Structure Of The Voltage Dependent Calcium Channel Beta-2 Subunit In Complex With The Cav1.2 I-Ii Linker

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/337 (62%), Positives = 254/337 (75%), Gaps = 40/337 (11%)

Query: 11  SQPS-SDLSLDEEKETLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGY 69
           S+PS SD+SL+E++E +RRE ERQA +QLEKA+ K VAFAVRTNV Y  + +DD PV G 
Sbjct: 1   SRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGM 60

Query: 70  AVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQ-ARNPKLYSS 128
           A+SF+  +FLH+KEK++++WWIGRLVKEG E GFIPSPVKLEN+RLQ  Q A+  KL+S 
Sbjct: 61  AISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQRAKEFKLHSK 120

Query: 129 --------KTSSTSNLGALSSDAP----SP------------------------GMIIIT 152
                   KT  T     + S  P     P                        G I IT
Sbjct: 121 EKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT 180

Query: 153 RVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTI 212
           RVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQLVVLD DTI
Sbjct: 181 RVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLVVLDADTI 239

Query: 213 NHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFD 272
           NHP+QL+KT+L+P +VY+KISSPKVLQRLIKSRGKSQ +HLNVQMVAA+KLAQCP E+FD
Sbjct: 240 NHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPELFD 299

Query: 273 VILDENQLEDACEHIAEYLEAYWRATHPPAAP-PQPL 308
           VILDENQLEDACEH+A+YLEAYW+ATHPP++  P PL
Sbjct: 300 VILDENQLEDACEHLADYLEAYWKATHPPSSNLPNPL 336

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395539976|ref|XP_003771938.1| PREDICTED: voltage-dependent L-type calcium channel subunit beta-2 isoform 2 [Sarcophilus harrisii]

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/348 (59%), Positives = 254/348 (72%), Gaps = 51/348 (14%)

Query: 2   VVGSAESNFSQPS-SDLSLDEEKETLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSI 60
           + GSA+S  S+PS SD+SL+E++E +RRE ERQA +QLEKA+ K VAFAVRTNV Y  + 
Sbjct: 22  ICGSADSYTSRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAH 81

Query: 61  DDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQ- 119
           +DD PV G A+SF+  +FLH+KEK++++WWIGRLVKEG E GFIPSPVKLEN+RLQ  Q 
Sbjct: 82  EDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQR 141

Query: 120 ARNPKLYSSKTSSTSN---------LGALSSDAPSP------------------------ 146
           A+  K YS  +   SN         L +L ++   P                        
Sbjct: 142 AKQGKFYSRVSDMGSNHSVPTNLSPLLSLQTEHIPPYDVVPSMRPVVLVGPSLKGYEVTD 201

Query: 147 ---------------GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTE 191
                          G I ITRVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+E
Sbjct: 202 MMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSE 260

Query: 192 IERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTR 251
           IER++ELA TLQLVVLD DTINHP+QL+KT+L+P IVY+KISSPKVLQRLIKSRGKSQ +
Sbjct: 261 IERIFELARTLQLVVLDADTINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKSRGKSQAK 320

Query: 252 HLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATH 299
           HLNVQMVAA+KLAQCP E+FDVILDENQLEDACEH+A+Y+EAYW+ATH
Sbjct: 321 HLNVQMVAADKLAQCPPELFDVILDENQLEDACEHLADYMEAYWKATH 368

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|119580962|gb|EAW60558.1| calcium channel, voltage-dependent, beta 1 subunit, isoform CRA_c [Homo sapiens]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/360 (58%), Positives = 258/360 (71%), Gaps = 56/360 (15%)

Query: 4   GSAESNFSQPS-SDLSLDEEKETLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDD 62
           GSAES  S+PS SD+SL+E++E LR+E ERQAL+QLEKA+ K VAFAVRTNV Y+ S  D
Sbjct: 58  GSAESYTSRPSDSDVSLEEDREALRKEAERQALAQLEKAKTKPVAFAVRTNVGYNPSPGD 117

Query: 63  DSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRL-QQTQAR 121
           + PV G A++F+  +FLHIKEKY+++WWIGRLVKEG E GFIPSPVKL++LRL Q+ + R
Sbjct: 118 EVPVQGVAITFEPKDFLHIKEKYNNDWWIGRLVKEGCEVGFIPSPVKLDSLRLLQEQKLR 177

Query: 122 NPKLYS------------------------SKTSSTSNLGALSSDAPSP----------- 146
             +L S                         + S ++     S   P P           
Sbjct: 178 QNRLGSRCNEMTNLAFELDPLELEEEEAELGEQSGSAKTSVSSVTTPPPHGKRIPFFKKV 237

Query: 147 -----------------GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQ 189
                            G I ITRVTADISLAKRS+++NPSK  I+ERSN+RSS L EVQ
Sbjct: 238 TDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKHIIIERSNTRSS-LAEVQ 296

Query: 190 TEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQ 249
           +EIER++ELA TLQLV LD DTINHP+QL+KT+L+P IVY+KI+SPKVLQRLIKSRGKSQ
Sbjct: 297 SEIERIFELARTLQLVALDADTINHPAQLSKTSLAPIIVYIKITSPKVLQRLIKSRGKSQ 356

Query: 250 TRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAA-PPQPL 308
           ++HLNVQ+ A+EKLAQCP EMFD+ILDENQLEDACEH+AEYLEAYW+ATHPP++ PP PL
Sbjct: 357 SKHLNVQIAASEKLAQCPPEMFDIILDENQLEDACEHLAEYLEAYWKATHPPSSTPPNPL 416

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395539974|ref|XP_003771937.1| PREDICTED: voltage-dependent L-type calcium channel subunit beta-2 isoform 1 [Sarcophilus harrisii]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/346 (60%), Positives = 253/346 (73%), Gaps = 51/346 (14%)

Query: 4   GSAESNFSQPS-SDLSLDEEKETLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDD 62
           GSA+S  S+PS SD+SL+E++E +RRE ERQA +QLEKA+ K VAFAVRTNV Y  + +D
Sbjct: 75  GSADSYTSRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAHED 134

Query: 63  DSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQ-AR 121
           D PV G A+SF+  +FLH+KEK++++WWIGRLVKEG E GFIPSPVKLEN+RLQ  Q A+
Sbjct: 135 DVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQRAK 194

Query: 122 NPKLYS------SKTSSTSNLGALSS--------------------DAPS---------- 145
             K YS      S  S  +NL  L S                      PS          
Sbjct: 195 QGKFYSRVSDMGSNHSVPTNLSPLLSLQTEHIPPYDVVPSMRPVVLVGPSLKGYEVTDMM 254

Query: 146 ------------PGMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIE 193
                        G I ITRVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIE
Sbjct: 255 QKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIE 313

Query: 194 RVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHL 253
           R++ELA TLQLVVLD DTINHP+QL+KT+L+P IVY+KISSPKVLQRLIKSRGKSQ +HL
Sbjct: 314 RIFELARTLQLVVLDADTINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKSRGKSQAKHL 373

Query: 254 NVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATH 299
           NVQMVAA+KLAQCP E+FDVILDENQLEDACEH+A+Y+EAYW+ATH
Sbjct: 374 NVQMVAADKLAQCPPELFDVILDENQLEDACEHLADYMEAYWKATH 419

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|49259232|pdb|1T3L|A Chain A, Structural Analysis Of The Voltage-Dependent Calcium Channel Beta Subunit Functional Core In Complex With Alpha1 Interaction Domain gi|49259234|pdb|1T3S|A Chain A, Structural Analysis Of The Voltage-Dependent Calcium Channel Beta Subunit Functional Core

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/337 (62%), Positives = 253/337 (75%), Gaps = 40/337 (11%)

Query: 11  SQPS-SDLSLDEEKETLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGY 69
           S+PS SD+SL+E++E +RRE ERQA +QLEKA+ K VAFAVRTNV Y  + +DD PV G 
Sbjct: 1   SRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGM 60

Query: 70  AVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQ-ARNPKLYSS 128
           A+SF+  +FLH+KEK++++WWIGRLVKEG E GFIPS VKLEN+RLQ  Q A+  KL+S 
Sbjct: 61  AISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSRVKLENMRLQHEQRAKEFKLHSK 120

Query: 129 --------KTSSTSNLGALSSDAP----SP------------------------GMIIIT 152
                   KT  T     + S  P     P                        G I IT
Sbjct: 121 EKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT 180

Query: 153 RVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTI 212
           RVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQLVVLD DTI
Sbjct: 181 RVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLVVLDADTI 239

Query: 213 NHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFD 272
           NHP+QL+KT+L+P +VY+KISSPKVLQRLIKSRGKSQ +HLNVQMVAA+KLAQCP E+FD
Sbjct: 240 NHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPELFD 299

Query: 273 VILDENQLEDACEHIAEYLEAYWRATHPPAAP-PQPL 308
           VILDENQLEDACEH+A+YLEAYW+ATHPP++  P PL
Sbjct: 300 VILDENQLEDACEHLADYLEAYWKATHPPSSNLPNPL 336

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348521380|ref|XP_003448204.1| PREDICTED: voltage-dependent L-type calcium channel subunit beta-4-like [Oreochromis niloticus]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/378 (55%), Positives = 258/378 (68%), Gaps = 72/378 (19%)

Query: 4   GSAESNFSQPS-SDLSLDEEKETLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDD 62
           GSA+S  S+PS SDLSL+E++E  RRE ERQA  QLE+A+AK VAFAVRTNV Y G++D+
Sbjct: 16  GSADSYTSRPSDSDLSLEEDQEASRREAERQAQLQLERAKAKPVAFAVRTNVSYCGALDE 75

Query: 63  DSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQARN 122
           D PV G A++F+  +FLHIKEKY+++WWIGRLVKEG++  FIPSPVKLE +R++Q Q   
Sbjct: 76  DCPVQGAAINFETKDFLHIKEKYNNDWWIGRLVKEGADITFIPSPVKLEAMRIKQEQK-- 133

Query: 123 PKLYSSKTSSTSNLGALSSDAPSP------------------------------------ 146
               +++    ++ G   S  PS                                     
Sbjct: 134 ---AAARKGGNASSGGWRSTPPSAAKQKQKQTEHVPPYDVVPSMRPVVLVGPSLKGYEVT 190

Query: 147 ----------------GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQT 190
                           G I ITRVTAD+SLAKRS+++   K+AIMERSN+RSS L EVQ+
Sbjct: 191 DMMQKALFDFLKHRFDGRITITRVTADLSLAKRSVLN---KKAIMERSNTRSS-LAEVQS 246

Query: 191 EIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQT 250
           EIER++ELA +LQLVVLD DTINHP+QL KT+L+P IVY+K+SSPKVLQRLIKSRGKSQ+
Sbjct: 247 EIERIFELAKSLQLVVLDADTINHPAQLLKTSLAPIIVYVKVSSPKVLQRLIKSRGKSQS 306

Query: 251 RHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATH-PPAAPPQPLT 309
           +HLNVQM+A +KLAQCP EMFDVILDENQLEDAC+H+AEYLE YWRATH P +AP  PL 
Sbjct: 307 KHLNVQMMAGDKLAQCPPEMFDVILDENQLEDACDHLAEYLEIYWRATHLPCSAPVNPLL 366

Query: 310 LLPPRQLTAHQSVVIPPS 327
                     QSV+ PPS
Sbjct: 367 ---------DQSVITPPS 375

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410899304|ref|XP_003963137.1| PREDICTED: voltage-dependent L-type calcium channel subunit beta-4-like [Takifugu rubripes]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/378 (54%), Positives = 258/378 (68%), Gaps = 72/378 (19%)

Query: 4   GSAESNFSQPS-SDLSLDEEKETLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDD 62
           GSA+S  S+PS SDLSL+E++E  RRE ERQA  QLE+A++K VAFAV+TNV Y G++D+
Sbjct: 16  GSADSYTSRPSDSDLSLEEDQEASRREAERQAQLQLERAKSKPVAFAVKTNVSYCGALDE 75

Query: 63  DSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQARN 122
           D PV G A++F+  +FLHIKEKY+++WWIGRLVKEG++  FIPSPVKLE +R++Q Q   
Sbjct: 76  DCPVQGAAINFETKDFLHIKEKYNNDWWIGRLVKEGADITFIPSPVKLEAMRIKQEQK-- 133

Query: 123 PKLYSSKTSSTSNLGALSSDAPSP------------------------------------ 146
               +++    ++ G   S  PS                                     
Sbjct: 134 ---AAARKGGNASSGGWRSTPPSAAKQKQKQTEPVPPYDVVPSMRPVVLVGPSLKGYEVT 190

Query: 147 ----------------GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQT 190
                           G I ITRVTAD+SLAKRS+++   K+AIMERSN+RSS L EVQ+
Sbjct: 191 DMMQKALFDFLKHRFDGRISITRVTADLSLAKRSVLN---KKAIMERSNTRSS-LAEVQS 246

Query: 191 EIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQT 250
           EIER++ELA +LQLV+LD DTINHP+QL KT+L+P IVY+K+SSPKVLQRLIKSRGKSQ+
Sbjct: 247 EIERIFELAKSLQLVILDADTINHPAQLLKTSLAPIIVYVKVSSPKVLQRLIKSRGKSQS 306

Query: 251 RHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATH-PPAAPPQPLT 309
           +HLNVQM+A +KLAQCP EMFDVILDENQLEDACEH+AEYLE YWRATH P +AP  PL 
Sbjct: 307 KHLNVQMMAGDKLAQCPPEMFDVILDENQLEDACEHLAEYLEIYWRATHLPCSAPANPLL 366

Query: 310 LLPPRQLTAHQSVVIPPS 327
                     QSV+ PPS
Sbjct: 367 ---------EQSVITPPS 375

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47228723|emb|CAG07455.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/378 (54%), Positives = 258/378 (68%), Gaps = 72/378 (19%)

Query: 4   GSAESNFSQPS-SDLSLDEEKETLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDD 62
           GSA+S  S+PS SDLSL+E++E  RR+ ERQA  QLE+A++K VAFAV+TNV Y G++D+
Sbjct: 2   GSADSYTSRPSDSDLSLEEDQEASRRDAERQAQLQLERAKSKPVAFAVKTNVSYCGALDE 61

Query: 63  DSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQARN 122
           D PV G A++F+  +FLHIKEKY+++WWIGRLVKEG++  FIPSPVKLE +R++Q Q   
Sbjct: 62  DCPVQGAAINFETKDFLHIKEKYNNDWWIGRLVKEGADITFIPSPVKLEAMRIKQEQK-- 119

Query: 123 PKLYSSKTSSTSNLGALSSDAPSP------------------------------------ 146
               +++    ++ G   S  PS                                     
Sbjct: 120 ---AAARKGGNASSGGWRSTPPSAAKQKPKQTEPVPPYDVVPSMRPVVLVGPSLKGYEVT 176

Query: 147 ----------------GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQT 190
                           G I ITRVTAD+SLAKRS+++   K+AIMERSN+RSS L EVQ+
Sbjct: 177 DMMQKALFDFLKHRFDGRISITRVTADLSLAKRSVLN---KKAIMERSNTRSS-LAEVQS 232

Query: 191 EIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQT 250
           EIER++ELA +LQLV+LD DTINHP+QL KT+L+P IVY+K+SSPKVLQRLIKSRGKSQ+
Sbjct: 233 EIERIFELAKSLQLVILDADTINHPAQLLKTSLAPIIVYVKVSSPKVLQRLIKSRGKSQS 292

Query: 251 RHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATH-PPAAPPQPLT 309
           +HLNVQM+A +KLAQCP EMFDVILDENQLEDACEH+AEYLE YWRATH P +AP  PL 
Sbjct: 293 KHLNVQMMAGDKLAQCPPEMFDVILDENQLEDACEHLAEYLEIYWRATHLPCSAPANPLV 352

Query: 310 LLPPRQLTAHQSVVIPPS 327
                     QSV+ PPS
Sbjct: 353 ---------DQSVITPPS 361

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	510
FB|FBgn0259822	817	Ca-beta "Ca2+-channel-protein-	0.292	0.182	0.832	2.4e-108
UNIPROTKB|F1NX50	420	CACNB2 "Uncharacterized protei	0.290	0.352	0.818	7.6e-99
ZFIN|ZDB-GENE-080320-2	519	cacnb4a "calcium channel, volt	0.290	0.285	0.785	6e-97
UNIPROTKB|F1NQG2	472	CACNB4 "Uncharacterized protei	0.290	0.313	0.805	1.3e-96
UNIPROTKB|F1NQG4	386	CACNB4 "Uncharacterized protei	0.290	0.383	0.805	1.3e-96
UNIPROTKB|E7EN11	473	CACNB4 "Voltage-dependent L-ty	0.290	0.312	0.798	2.6e-96
UNIPROTKB|F1N167	520	CACNB4 "Uncharacterized protei	0.290	0.284	0.798	3.3e-96
UNIPROTKB|F1PNU9	472	CACNB4 "Uncharacterized protei	0.290	0.313	0.798	3.3e-96
UNIPROTKB|F8WA06	487	CACNB4 "Voltage-dependent L-ty	0.290	0.303	0.798	3.3e-96
UNIPROTKB|H0Y476	515	CACNB4 "Voltage-dependent L-ty	0.290	0.287	0.798	3.3e-96

FB|FBgn0259822 Ca-beta "Ca2+-channel-protein-beta-subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 622 (224.0 bits), Expect = 2.4e-108, Sum P(2) = 2.4e-108
 Identities = 124/149 (83%), Positives = 137/149 (91%)

Query:   147 GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVV 206
             G IIITRV ADISLAKRS+M+NPSKRAIMERS+SRS  L +VQ EIER++ELA +LQLVV
Sbjct:   241 GRIIITRVMADISLAKRSIMNNPSKRAIMERSSSRSDCLGKVQEEIERIFELARSLQLVV 300

Query:   207 LDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQC 266
             LDCDTINHPSQLAKT+L+P IVYLKISS KVLQRLIKSRGKSQ ++L+VQMVAAEKLAQC
Sbjct:   301 LDCDTINHPSQLAKTSLAPTIVYLKISSSKVLQRLIKSRGKSQAKNLSVQMVAAEKLAQC 360

Query:   267 PQEMFDVILDENQLEDACEHIAEYLEAYW 295
             P +MFDVILDENQLEDACEHIAEYLE YW
Sbjct:   361 PPDMFDVILDENQLEDACEHIAEYLETYW 389

GO:0005886 "plasma membrane" evidence=ISS;NAS

GO:0005245 "voltage-gated calcium channel activity" evidence=ISS;NAS

GO:0005891 "voltage-gated calcium channel complex" evidence=ISS;NAS

GO:0006816 "calcium ion transport" evidence=ISS

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

UNIPROTKB|F1NX50 CACNB2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 620 (223.3 bits), Expect = 7.6e-99, Sum P(2) = 7.6e-99
 Identities = 122/149 (81%), Positives = 139/149 (93%)

Query:   147 GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVV 206
             G I ITRVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQLVV
Sbjct:   234 GRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLVV 292

Query:   207 LDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQC 266
             LD DTINHP+QL+KT+L+P IVY+KISSPKVLQRLIKSRGKSQ +HLNVQMVAA+KLAQC
Sbjct:   293 LDADTINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQC 352

Query:   267 PQEMFDVILDENQLEDACEHIAEYLEAYW 295
             P EMFDVILDENQLEDACEH+A+YLEAYW
Sbjct:   353 PPEMFDVILDENQLEDACEHLADYLEAYW 381

GO:0005245 "voltage-gated calcium channel activity" evidence=IEA

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA

ZFIN|ZDB-GENE-080320-2 cacnb4a "calcium channel, voltage-dependent, beta 4a subunit" [Danio rerio (taxid:7955)]

 Score = 607 (218.7 bits), Expect = 6.0e-97, Sum P(2) = 6.0e-97
 Identities = 117/149 (78%), Positives = 140/149 (93%)

Query:   147 GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVV 206
             G I ITRVTADISLAKRS+++NPSKRAI+ERSN+RS+ L EVQ+EIER++ELA +LQLVV
Sbjct:   250 GRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSN-LAEVQSEIERIFELARSLQLVV 308

Query:   207 LDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQC 266
             LD DTINHP+QL KT+L+P IV++K+SSPKVLQRLIKSRGKSQ++HLNVQ+VAA+KLAQC
Sbjct:   309 LDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQC 368

Query:   267 PQEMFDVILDENQLEDACEHIAEYLEAYW 295
             P EMFD+ILDENQLEDACEH++EYLEAYW
Sbjct:   369 PPEMFDIILDENQLEDACEHLSEYLEAYW 397

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

GO:0005245 "voltage-gated calcium channel activity" evidence=IEA

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA

GO:0055113 "epiboly involved in gastrulation with mouth forming second" evidence=IMP

UNIPROTKB|F1NQG2 CACNB4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 614 (221.2 bits), Expect = 1.3e-96, Sum P(2) = 1.3e-96
 Identities = 120/149 (80%), Positives = 140/149 (93%)

Query:   147 GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVV 206
             G I ITRVTADISLAKRS+++NPSKRAI+ERSN+RSS L EVQ+EIER++ELA +LQLVV
Sbjct:   204 GRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSS-LAEVQSEIERIFELARSLQLVV 262

Query:   207 LDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQC 266
             LD DTINHP+QL KT+L+P IV++K+SSPKVLQRLIKSRGKSQ++HLNVQ+VAA+KLAQC
Sbjct:   263 LDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQC 322

Query:   267 PQEMFDVILDENQLEDACEHIAEYLEAYW 295
             P EMFDVILDENQLEDACEH+AEYLEAYW
Sbjct:   323 PPEMFDVILDENQLEDACEHLAEYLEAYW 351

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=IEA

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=IEA

GO:0007528 "neuromuscular junction development" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0008331 "high voltage-gated calcium channel activity" evidence=IEA

GO:0014051 "gamma-aminobutyric acid secretion" evidence=IEA

GO:0019227 "neuronal action potential propagation" evidence=IEA

GO:0035249 "synaptic transmission, glutamatergic" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0046058 "cAMP metabolic process" evidence=IEA

GO:0048536 "spleen development" evidence=IEA

GO:0048538 "thymus development" evidence=IEA

GO:0048541 "Peyer's patch development" evidence=IEA

GO:0050852 "T cell receptor signaling pathway" evidence=IEA

GO:0050908 "detection of light stimulus involved in visual perception" evidence=IEA

UNIPROTKB|F1NQG4 CACNB4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 614 (221.2 bits), Expect = 1.3e-96, Sum P(2) = 1.3e-96
 Identities = 120/149 (80%), Positives = 140/149 (93%)

Query:   147 GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVV 206
             G I ITRVTADISLAKRS+++NPSKRAI+ERSN+RSS L EVQ+EIER++ELA +LQLVV
Sbjct:   203 GRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSS-LAEVQSEIERIFELARSLQLVV 261

Query:   207 LDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQC 266
             LD DTINHP+QL KT+L+P IV++K+SSPKVLQRLIKSRGKSQ++HLNVQ+VAA+KLAQC
Sbjct:   262 LDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQC 321

Query:   267 PQEMFDVILDENQLEDACEHIAEYLEAYW 295
             P EMFDVILDENQLEDACEH+AEYLEAYW
Sbjct:   322 PPEMFDVILDENQLEDACEHLAEYLEAYW 350

GO:0005245 "voltage-gated calcium channel activity" evidence=IEA

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA

UNIPROTKB|E7EN11 CACNB4 "Voltage-dependent L-type calcium channel subunit beta-4" [Homo sapiens (taxid:9606)]

 Score = 610 (219.8 bits), Expect = 2.6e-96, Sum P(2) = 2.6e-96
 Identities = 119/149 (79%), Positives = 139/149 (93%)

Query:   147 GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVV 206
             G I ITRVTADISLAKRS+++NPSKRAI+ERSN+RSS L EVQ+EIER++ELA +LQLVV
Sbjct:   205 GRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSS-LAEVQSEIERIFELARSLQLVV 263

Query:   207 LDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQC 266
             LD DTINHP+QL KT+L+P IV++K+SSPKVLQRLIKSRGKSQ++HLNVQ+VAA+KLAQC
Sbjct:   264 LDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQC 323

Query:   267 PQEMFDVILDENQLEDACEHIAEYLEAYW 295
             P EMFDVILDENQLEDACEH+ EYLEAYW
Sbjct:   324 PPEMFDVILDENQLEDACEHLGEYLEAYW 352

GO:0005245 "voltage-gated calcium channel activity" evidence=IEA

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA

UNIPROTKB|F1N167 CACNB4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 610 (219.8 bits), Expect = 3.3e-96, Sum P(2) = 3.3e-96
 Identities = 119/149 (79%), Positives = 139/149 (93%)

Query:   147 GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVV 206
             G I ITRVTADISLAKRS+++NPSKRAI+ERSN+RSS L EVQ+EIER++ELA +LQLVV
Sbjct:   252 GRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSS-LAEVQSEIERIFELARSLQLVV 310

Query:   207 LDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQC 266
             LD DTINHP+QL KT+L+P IV++K+SSPKVLQRLIKSRGKSQ++HLNVQ+VAA+KLAQC
Sbjct:   311 LDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQC 370

Query:   267 PQEMFDVILDENQLEDACEHIAEYLEAYW 295
             P EMFDVILDENQLEDACEH+ EYLEAYW
Sbjct:   371 PPEMFDVILDENQLEDACEHLGEYLEAYW 399

GO:0050908 "detection of light stimulus involved in visual perception" evidence=IEA

GO:0050852 "T cell receptor signaling pathway" evidence=IEA

GO:0048541 "Peyer's patch development" evidence=IEA

GO:0048538 "thymus development" evidence=IEA

GO:0048536 "spleen development" evidence=IEA

GO:0046058 "cAMP metabolic process" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0035249 "synaptic transmission, glutamatergic" evidence=IEA

GO:0019227 "neuronal action potential propagation" evidence=IEA

GO:0014051 "gamma-aminobutyric acid secretion" evidence=IEA

GO:0008331 "high voltage-gated calcium channel activity" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0007528 "neuromuscular junction development" evidence=IEA

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=IEA

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA

UNIPROTKB|F1PNU9 CACNB4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 610 (219.8 bits), Expect = 3.3e-96, Sum P(2) = 3.3e-96
 Identities = 119/149 (79%), Positives = 139/149 (93%)

Query:   147 GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVV 206
             G I ITRVTADISLAKRS+++NPSKRAI+ERSN+RSS L EVQ+EIER++ELA +LQLVV
Sbjct:   204 GRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSS-LAEVQSEIERIFELARSLQLVV 262

Query:   207 LDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQC 266
             LD DTINHP+QL KT+L+P IV++K+SSPKVLQRLIKSRGKSQ++HLNVQ+VAA+KLAQC
Sbjct:   263 LDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQC 322

Query:   267 PQEMFDVILDENQLEDACEHIAEYLEAYW 295
             P EMFDVILDENQLEDACEH+ EYLEAYW
Sbjct:   323 PPEMFDVILDENQLEDACEHLGEYLEAYW 351

GO:0050908 "detection of light stimulus involved in visual perception" evidence=IEA

GO:0050852 "T cell receptor signaling pathway" evidence=IEA

GO:0048541 "Peyer's patch development" evidence=IEA

GO:0048538 "thymus development" evidence=IEA

GO:0048536 "spleen development" evidence=IEA

GO:0046058 "cAMP metabolic process" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0035249 "synaptic transmission, glutamatergic" evidence=IEA

GO:0019227 "neuronal action potential propagation" evidence=IEA

GO:0014051 "gamma-aminobutyric acid secretion" evidence=IEA

GO:0008331 "high voltage-gated calcium channel activity" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0007528 "neuromuscular junction development" evidence=IEA

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=IEA

GO:0006874 "cellular calcium ion homeostasis" evidence=IEA

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA

UNIPROTKB|F8WA06 CACNB4 "Voltage-dependent L-type calcium channel subunit beta-4" [Homo sapiens (taxid:9606)]

 Score = 610 (219.8 bits), Expect = 3.3e-96, Sum P(2) = 3.3e-96
 Identities = 119/149 (79%), Positives = 139/149 (93%)

Query:   147 GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVV 206
             G I ITRVTADISLAKRS+++NPSKRAI+ERSN+RSS L EVQ+EIER++ELA +LQLVV
Sbjct:   219 GRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSS-LAEVQSEIERIFELARSLQLVV 277

Query:   207 LDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQC 266
             LD DTINHP+QL KT+L+P IV++K+SSPKVLQRLIKSRGKSQ++HLNVQ+VAA+KLAQC
Sbjct:   278 LDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQC 337

Query:   267 PQEMFDVILDENQLEDACEHIAEYLEAYW 295
             P EMFDVILDENQLEDACEH+ EYLEAYW
Sbjct:   338 PPEMFDVILDENQLEDACEHLGEYLEAYW 366

GO:0005245 "voltage-gated calcium channel activity" evidence=IEA

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA

UNIPROTKB|H0Y476 CACNB4 "Voltage-dependent L-type calcium channel subunit beta-4" [Homo sapiens (taxid:9606)]

 Score = 610 (219.8 bits), Expect = 3.3e-96, Sum P(2) = 3.3e-96
 Identities = 119/149 (79%), Positives = 139/149 (93%)

Query:   147 GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVV 206
             G I ITRVTADISLAKRS+++NPSKRAI+ERSN+RSS L EVQ+EIER++ELA +LQLVV
Sbjct:   247 GRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSS-LAEVQSEIERIFELARSLQLVV 305

Query:   207 LDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQC 266
             LD DTINHP+QL KT+L+P IV++K+SSPKVLQRLIKSRGKSQ++HLNVQ+VAA+KLAQC
Sbjct:   306 LDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQC 365

Query:   267 PQEMFDVILDENQLEDACEHIAEYLEAYW 295
             P EMFDVILDENQLEDACEH+ EYLEAYW
Sbjct:   366 PPEMFDVILDENQLEDACEHLGEYLEAYW 394

GO:0005245 "voltage-gated calcium channel activity" evidence=IEA

GO:0005891 "voltage-gated calcium channel complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P54285	CACB3_MOUSE	No assigned EC number	0.5401	0.6117	0.6446	yes	N/A
P54284	CACB3_HUMAN	No assigned EC number	0.5427	0.6117	0.6446	yes	N/A
P54287	CACB3_RAT	No assigned EC number	0.5401	0.6117	0.6446	yes	N/A
P54286	CACB3_RABIT	No assigned EC number	0.5427	0.6117	0.6540	yes	N/A
Q9MZL3	CACB3_BOVIN	No assigned EC number	0.5432	0.6196	0.6528	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	510
cd11863	62	cd11863, SH3_CACNB, Src Homology 3 domain of Volta	5e-39
pfam00625	183	pfam00625, Guanylate_kin, Guanylate kinase	6e-38
cd12043	68	cd12043, SH3_CACNB4, Src Homology 3 domain of Volt	8e-31
cd12041	68	cd12041, SH3_CACNB1, Src Homology 3 domain of Volt	1e-29
cd12040	69	cd12040, SH3_CACNB2, Src Homology 3 domain of Volt	7e-29
cd12042	68	cd12042, SH3_CACNB3, Src Homology 3 domain of Volt	6e-27
smart00072	174	smart00072, GuKc, Guanylate kinase homologues	1e-22
pfam00625	183	pfam00625, Guanylate_kin, Guanylate kinase	1e-15
pfam12052	42	pfam12052, VGCC_beta4Aa_N, Voltage gated calcium c	5e-12
pfam12052	42	pfam12052, VGCC_beta4Aa_N, Voltage gated calcium c	1e-11
cd12035	62	cd12035, SH3_MPP1-like, Src Homology 3 domain of M	2e-07
cd12081	62	cd12081, SH3_CASK, Src Homology 3 domain of Calciu	1e-06
cd12080	62	cd12080, SH3_MPP1, Src Homology 3 domain of Membra	2e-06
cd12038	61	cd12038, SH3_MPP6, Src Homology 3 domain of Membra	5e-06
cd11861	61	cd11861, SH3_DLG-like, Src Homology 3 domain of Di	1e-05
smart00326	56	smart00326, SH3, Src homology 3 domains	1e-05
cd12030	66	cd12030, SH3_DLG4, Src Homology 3 domain of Disks	3e-05
cd11862	61	cd11862, SH3_MPP, Src Homology 3 domain of Membran	3e-05
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	3e-04
cd12036	63	cd12036, SH3_MPP5, Src Homology 3 domain of Membra	6e-04
cd12037	59	cd12037, SH3_MPP2, Src Homology 3 domain of Membra	8e-04
cd12029	67	cd12029, SH3_DLG3, Src Homology 3 domain of Disks	0.001
cd11845	52	cd11845, SH3_Src_like, Src homology 3 domain of Sr	0.001
cd12031	67	cd12031, SH3_DLG1, Src Homology 3 domain of Disks	0.004

>gnl|CDD|212797 cd11863, SH3_CACNB, Src Homology 3 domain of Voltage-dependent L-type calcium channel subunit beta

 Score =  135 bits (342), Expect = 5e-39
 Identities = 48/62 (77%), Positives = 55/62 (88%)

Query: 48  FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSP 107
           FAVRTNV YDGS+DDDSPV GYAVSF+  +FLHIKEKY+++WWIGRLVKEG + GFIPSP
Sbjct: 1   FAVRTNVGYDGSLDDDSPVPGYAVSFEAKDFLHIKEKYNNDWWIGRLVKEGCDIGFIPSP 60

Query: 108 VK 109
            K
Sbjct: 61  AK 62

Voltage-dependent calcium channels (Ca(V)s) are multi-protein complexes that regulate the entry of calcium into cells. They impact muscle contraction, neuronal migration, hormone and neurotransmitter release, and the activation of calcium-dependent signaling pathways. They are composed of four subunits: alpha1, alpha2delta, beta, and gamma. The beta subunit is a soluble and intracellular protein that interacts with the transmembrane alpha1 subunit. It facilitates the trafficking and proper localization of the alpha1 subunit to the cellular plasma membrane. Vertebrates contain four different beta subunits from distinct genes (beta1-4); each exists as multiple splice variants. All are expressed in the brain while other tissues show more specific expression patterns. The beta subunits show similarity to MAGUK (membrane-associated guanylate kinase) proteins in that they contain SH3 and inactive guanylate kinase (GuK) domains; however, they do not appear to contain a PDZ domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase

 Score =  137 bits (346), Expect = 6e-38
 Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 16/168 (9%)

Query: 138 ALSSDAPSPGMIIITRVTADISL-----------AKRSLMSNPSKRAIMERSNSRSSVLT 186
           AL  + P      ++  T                +K  + ++ S    +E +    +   
Sbjct: 21  ALLDEYPEKFGYSVSHTTRPPRPGEVDGKDYHFVSKEEMENDISANEFLEYAEFNGNYYG 80

Query: 187 EVQTEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRG 246
             +  IE++ E        +LD D I    QL K  LSP  V++K  S KVLQR +K RG
Sbjct: 81  TSKEAIEQIAESGKI---CILDVD-IQGVKQLRKAELSPISVFIKPPSLKVLQRRLKRRG 136

Query: 247 KSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAY 294
             Q   +N +M AAE+  Q    +FD I+  + L++A + + E LEA 
Sbjct: 137 TEQEEKINKRMEAAEQEFQHY-ALFDYIIVNDDLDEAYKKLKEILEAE 183

Length = 183

>gnl|CDD|212976 cd12043, SH3_CACNB4, Src Homology 3 domain of Voltage-dependent L-type calcium channel subunit beta4

 Score =  113 bits (284), Expect = 8e-31
 Identities = 48/68 (70%), Positives = 58/68 (85%)

Query: 44  KNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGF 103
           K VAFAVRTNV Y G++D+D PV G A+SFD  +FLHIKEKY+++WWIGRLVKEG E GF
Sbjct: 1   KPVAFAVRTNVSYCGALDEDVPVPGTAISFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGF 60

Query: 104 IPSPVKLE 111
           IPSP++LE
Sbjct: 61  IPSPLRLE 68

The beta4 subunit of voltage-dependent calcium channels (Ca(V)s) is one of four beta subunits present in vertebrates. It is the only beta subunit expressed in the cochlea and is highly expressed in the brain, predominantly in the cerebellum. Ca(V)s are multi-protein complexes that regulate the entry of calcium into cells. They impact muscle contraction, neuronal migration, hormone and neurotransmitter release, and the activation of calcium-dependent signaling pathways. They are composed of four subunits: alpha1, alpha2delta, beta, and gamma. The beta subunit is a soluble and intracellular protein that interacts with the transmembrane alpha1 subunit. It facilitates the trafficking and proper localization of the alpha1 subunit to the cellular plasma membrane. Vertebrates contain four different beta subunits from distinct genes (beta1-4); each exists as multiple splice variants. All are expressed in the brain while other tissues show more specific expression patterns. The beta subunits show similarity to MAGUK (membrane-associated guanylate kinase) proteins in that they contain SH3 and inactive guanylate kinase (GuK) domains; however, they do not appear to contain a PDZ domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 68

>gnl|CDD|212974 cd12041, SH3_CACNB1, Src Homology 3 domain of Voltage-dependent L-type calcium channel subunit beta-1

 Score =  110 bits (277), Expect = 1e-29
 Identities = 49/68 (72%), Positives = 56/68 (82%)

Query: 44  KNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGF 103
           K VAFAVRTNV Y+ S  DD PV G A+SF+  +FLHIKEKY+++WWIGRLVKEG E GF
Sbjct: 1   KPVAFAVRTNVGYNPSPGDDVPVQGMAISFEPKDFLHIKEKYNNDWWIGRLVKEGCEVGF 60

Query: 104 IPSPVKLE 111
           IPSPVKLE
Sbjct: 61  IPSPVKLE 68

The beta1 subunit of voltage-dependent calcium channels (Ca(V)s) is one of four beta subunits present in vertebrates. It is the only beta subunit, as the beta1a variant, expressed in skeletal muscle; the beta1b variant is also widely expressed in other tissues including the heart and brain. Knockout of the beta1 gene in mice results in embryonic lethality, demonstrating its importance in development. Ca(V)s are multi-protein complexes that regulate the entry of calcium into cells. They impact muscle contraction, neuronal migration, hormone and neurotransmitter release, and the activation of calcium-dependent signaling pathways. They are composed of four subunits: alpha1, alpha2delta, beta, and gamma. The beta subunit is a soluble and intracellular protein that interacts with the transmembrane alpha1 subunit. It facilitates the trafficking and proper localization of the alpha1 subunit to the cellular plasma membrane. Vertebrates contain four different beta subunits from distinct genes (beta1-4); each exists as multiple splice variants. All are expressed in the brain while other tissues show more specific expression patterns. The beta subunits show similarity to MAGUK (membrane-associated guanylate kinase) proteins in that they contain SH3 and inactive guanylate kinase (GuK) domains; however, they do not appear to contain a PDZ domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 68

>gnl|CDD|212973 cd12040, SH3_CACNB2, Src Homology 3 domain of Voltage-dependent L-type calcium channel subunit beta2

 Score =  108 bits (271), Expect = 7e-29
 Identities = 46/69 (66%), Positives = 56/69 (81%)

Query: 43  AKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECG 102
            K VAFAVRTNV Y  + +DD PV G A+SF+  +FLH+KEK++++WWIGRLVKEG E G
Sbjct: 1   TKPVAFAVRTNVGYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIG 60

Query: 103 FIPSPVKLE 111
           FIPSPVKLE
Sbjct: 61  FIPSPVKLE 69

The beta2 subunit of voltage-dependent calcium channels (Ca(V)s) is one of four beta subunits present in vertebrates. It is expressed in the heart and is present in specific neuronal cells including cerebellar Purkinje cells, hippocampal pyramidal neurons, and photoreceptors. Knockout of the beta2 gene in mice results in embryonic lethality, demonstrating its importance in development. Ca(V)s are multi-protein complexes that regulate the entry of calcium into cells. They impact muscle contraction, neuronal migration, hormone and neurotransmitter release, and the activation of calcium-dependent signaling pathways. They are composed of four subunits: alpha1, alpha2delta, beta, and gamma. The beta subunit is a soluble and intracellular protein that interacts with the transmembrane alpha1 subunit. It facilitates the trafficking and proper localization of the alpha1 subunit to the cellular plasma membrane. Vertebrates contain four different beta subunits from distinct genes (beta1-4); each exists as multiple splice variants. All are expressed in the brain while other tissues show more specific expression patterns. The beta subunits show similarity to MAGUK (membrane-associated guanylate kinase) proteins in that they contain SH3 and inactive guanylate kinase (GuK) domains; however, they do not appear to contain a PDZ domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 69

>gnl|CDD|212975 cd12042, SH3_CACNB3, Src Homology 3 domain of Voltage-dependent L-type calcium channel subunit beta3

 Score =  102 bits (256), Expect = 6e-27
 Identities = 43/68 (63%), Positives = 55/68 (80%)

Query: 44  KNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGF 103
           K VAFAVRTNV Y G++D++ PV G A++F+  +FLHIKEKY ++WWIGRLVKEG +  F
Sbjct: 1   KPVAFAVRTNVSYCGALDEECPVQGAAINFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAF 60

Query: 104 IPSPVKLE 111
           IPSP +LE
Sbjct: 61  IPSPQRLE 68

The beta3 subunit of voltage-dependent calcium channels (Ca(V)s) is one of four beta subunits present in vertebrates. It is the main beta subunit present in smooth muscles and is strongly expressed in the brain; it is predominant in the olfactory bulb, cortex, and hippocampus. It may play a role in regulating the NMDAR (N-methyl-d-aspartate receptor) activity in the hippocampus and thus, activity-dependent synaptic plasticity and cognitive behaviors. Ca(V)s are multi-protein complexes that regulate the entry of calcium into cells. They impact muscle contraction, neuronal migration, hormone and neurotransmitter release, and the activation of calcium-dependent signaling pathways. They are composed of four subunits: alpha1, alpha2delta, beta, and gamma. The beta subunit is a soluble and intracellular protein that interacts with the transmembrane alpha1 subunit. It facilitates the trafficking and proper localization of the alpha1 subunit to the cellular plasma membrane. Vertebrates contain four different beta subunits from distinct genes (beta1-4); each exists as multiple splice variants. All are expressed in the brain while other tissues show more specific expression patterns. The beta subunits show similarity to MAGUK (membrane-associated guanylate kinase) proteins in that they contain SH3 and inactive guanylate kinase (GuK) domains; however, they do not appear to contain a PDZ domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 68

>gnl|CDD|214504 smart00072, GuKc, Guanylate kinase homologues

 Score = 94.7 bits (236), Expect = 1e-22
 Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 15/181 (8%)

Query: 115 LQQTQARNPKLYSSKTSSTSNLGALSSDAPSPGMIIITRVTADISLAKRSLMSNPSKRAI 174
           L +     P  +    S T+         P PG         D     +    +  K  +
Sbjct: 9   LAELIQEIPDAFERVVSHTT-------RPPRPG----EVNGVDYHFVSKEEFEDDIKSGL 57

Query: 175 MERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISS 234
                          T  E + ++A   +  +LD D      QL K  L P ++++   S
Sbjct: 58  FLEWGEYEGNY--YGTSKETIRQVAEKGKHCLLDID-PQGVKQLRKAQLYPIVIFIAPPS 114

Query: 235 PKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAY 294
            + L+R ++ RG   +  +  ++ AA+K AQ    +FD ++  + LEDA E + E LEA 
Sbjct: 115 SEELERRLRQRGTETSERIQKRLAAAQKEAQEY-HLFDYVIVNDDLEDAYEELKEILEAE 173

Query: 295 W 295
            
Sbjct: 174 Q 174

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions. Length = 174

>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase

 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 16/98 (16%)

Query: 414 SMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISL-----------A 462
             RP+VL GPS  G      ++KAL D    +F     ++  T                +
Sbjct: 1   QRRPIVLSGPSGVG---KSHIKKALLDEYPEKF--GYSVSHTTRPPRPGEVDGKDYHFVS 55

Query: 463 KRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELA 500
           K  + ++ S    +E +    +     +  IE++ E  
Sbjct: 56  KEEMENDISANEFLEYAEFNGNYYGTSKEAIEQIAESG 93

Length = 183

>gnl|CDD|204819 pfam12052, VGCC_beta4Aa_N, Voltage gated calcium channel subunit beta domain 4Aa N terminal

 Score = 59.9 bits (145), Expect = 5e-12
 Identities = 28/42 (66%), Positives = 35/42 (83%), Gaps = 1/42 (2%)

Query: 4  GSAESNFSQPS-SDLSLDEEKETLRREKERQALSQLEKARAK 44
          GSA+S  S+PS SDLSL+E++E LRRE ERQA +QLEKA+ K
Sbjct: 1  GSADSYTSRPSDSDLSLEEDREALRREAERQAAAQLEKAKTK 42

The beta subunit of voltage gated calcium channels is coded for by four genes 1-4. Gene 4 can produce two types of beta4A domain (beta4Aa and beta4Ab) according to how the gene splicing is carried out. This family is part of the beta4Aa N terminal domain. It is made up of an alpha helix and a beta strand. It is thought to regulate the channel properties through protein-protein interactions with non Ca channel proteins. Length = 42

>gnl|CDD|204819 pfam12052, VGCC_beta4Aa_N, Voltage gated calcium channel subunit beta domain 4Aa N terminal

 Score = 59.1 bits (143), Expect = 1e-11
 Identities = 27/41 (65%), Positives = 34/41 (82%), Gaps = 1/41 (2%)

Query: 331 GSAESNFSQPS-SDLSLDEEKETLRREKERQALSQLEKARV 370
           GSA+S  S+PS SDLSL+E++E LRRE ERQA +QLEKA+ 
Sbjct: 1   GSADSYTSRPSDSDLSLEEDREALRREAERQAAAQLEKAKT 41

The beta subunit of voltage gated calcium channels is coded for by four genes 1-4. Gene 4 can produce two types of beta4A domain (beta4Aa and beta4Ab) according to how the gene splicing is carried out. This family is part of the beta4Aa N terminal domain. It is made up of an alpha helix and a beta strand. It is thought to regulate the channel properties through protein-protein interactions with non Ca channel proteins. Length = 42

>gnl|CDD|212968 cd12035, SH3_MPP1-like, Src Homology 3 domain of Membrane Protein, Palmitoylated 1 (or MAGUK p55 subfamily member 1)-like proteins

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 50  VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSE---CGFIPS 106
           VR    YD S DD  P     ++F   + L I  K D NWW  R  K G+     G IPS
Sbjct: 2   VRAQFDYDPSKDDLIPCQQAGIAFKTGDILQIISKDDHNWWQAR--KPGASKEPAGLIPS 59

Query: 107 P 107
           P
Sbjct: 60  P 60

This subfamily includes MPP1, CASK (Calcium/calmodulin-dependent Serine protein Kinase), Caenorhabditis elegans lin-2, and similar proteins. MPP1 and CASK are scaffolding proteins from the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). In addition, they also have the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. CASK and lin-2 also contain an N-terminal calmodulin-dependent kinase (CaMK)-like domain and two L27 domains. MPP1 is ubiquitously-expressed and plays roles in regulating neutrophil polarity, cell shape, hair cell development, and neural development and patterning of the retina. CASK is highly expressed in the mammalian nervous system and plays roles in synaptic protein targeting, neural development, and gene expression regulation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|213014 cd12081, SH3_CASK, Src Homology 3 domain of Calcium/calmodulin-dependent Serine protein Kinase

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 50  VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKE-GSECGFIPSP 107
           VR   +YD   DD  P     + F + + L I  K D NWW  +L        G IPSP
Sbjct: 2   VRAQFEYDPLKDDLIPCKQAGIRFRVGDILQIISKDDHNWWQAKLENSKNGTAGLIPSP 60

CASK is a scaffolding protein that is highly expressed in the mammalian nervous system and plays roles in synaptic protein targeting, neural development, and gene expression regulation. CASK interacts with many different binding partners including parkin, neurexin, syndecans, calcium channel proteins, caskin, among others, to perform specific functions in different subcellular locations. Disruption of the CASK gene in mice results in neonatal lethality while mutations in the human gene have been associated with X-linked mental retardation. Drosophila CASK is associated with both pre- and postsynaptic membranes and is crucial in synaptic transmission and vesicle cycling. CASK contains an N-terminal calmodulin-dependent kinase (CaMK)-like domain, two L27 domains, followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|213013 cd12080, SH3_MPP1, Src Homology 3 domain of Membrane Protein, Palmitoylated 1 (or MAGUK p55 subfamily member 1)

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 50  VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSE-CGFIPSP 107
           +R    YD   D+  P     + F   + + I  K DSNWW GR+   G E  G IPSP
Sbjct: 2   MRAQFDYDPKKDNLIPCKEAGLKFQTGDIIQIINKDDSNWWQGRVEGSGEESAGLIPSP 60

MPP1, also called 55 kDa erythrocyte membrane protein (p55), is a ubiquitously-expressed scaffolding protein that plays roles in regulating neutrophil polarity, cell shape, hair cell development, and neural development and patterning of the retina. It was originally identified as an erythrocyte protein that stabilizes the actin cytoskeleton to the plasma membrane by forming a complex with 4.1R protein and glycophorin C. MPP1 is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains the three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212971 cd12038, SH3_MPP6, Src Homology 3 domain of Membrane Protein, Palmitoylated 6 (or MAGUK p55 subfamily member 6)

 Score = 43.5 bits (102), Expect = 5e-06
 Identities = 20/57 (35%), Positives = 26/57 (45%)

Query: 50  VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
           V+ +  Y+   D+  P     + F   E L I  + D NWW    VKEG   G IPS
Sbjct: 2   VKCHFDYNPYNDNLIPCKEAGLKFSKGEILQIVNREDPNWWQASHVKEGGSAGLIPS 58

MPP6, also called Veli-associated MAGUK 1 (VAM-1) or PALS2, is a scaffolding protein that binds to Veli-1, a homolog of Caenorhabditis Lin-7. It is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212795 cd11861, SH3_DLG-like, Src Homology 3 domain of Disks large homolog proteins

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 50  VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSEC---GFIPS 106
           VR    YD S D   P     +SF   + LH+    D  WW  R V    E    G IPS
Sbjct: 2   VRALFDYDPSRDSGLP--SQGLSFKFGDILHVTNASDDEWWQARRVTPNGEEEEVGVIPS 59

The DLG-like proteins are scaffolding proteins that cluster at synapses and are also called PSD (postsynaptic density)-95 proteins or SAPs (synapse-associated proteins). They play important roles in synaptic development and plasticity, cell polarity, migration and proliferation. They are members of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. DLG-like proteins contain three PDZ domains and varying N-terminal regions. All DLG proteins exist as alternatively-spliced isoforms. Vertebrates contain four DLG proteins from different genes, called DLG1-4. DLG4 and DLG2 are found predominantly at postsynaptic sites and they mediate surface ion channel and receptor clustering. DLG3 is found axons and some presynaptic terminals. DLG1 interacts with AMPA-type glutamate receptors and is critical in their maturation and delivery to synapses. The SH3 domain of DLG4 binds and clusters the kainate subgroup of glutamate receptors via two proline-rich sequences in their C-terminal tail. It also binds AKAP79/150 (A-kinase anchoring protein). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 9/61 (14%)

Query: 46  VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIP 105
               VR    Y     D+       +SF   + + + EK D  WW GRL +   + G  P
Sbjct: 1   EGPQVRALYDYTAQDPDE-------LSFKKGDIITVLEKSDDGWWKGRLGRG--KEGLFP 51

Query: 106 S 106
           S
Sbjct: 52  S 52

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|212963 cd12030, SH3_DLG4, Src Homology 3 domain of Disks Large homolog 4

 Score = 41.5 bits (97), Expect = 3e-05
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 47  AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLV---KEGSECGF 103
            F +R    YD +   D      A+SF   + LH+ +  D  WW  R V    E  E GF
Sbjct: 1   GFYIRALFDYDKT--KDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETEEIGF 58

Query: 104 IPSPVKLE 111
           IPS  ++E
Sbjct: 59  IPSKRRVE 66

DLG4, also called postsynaptic density-95 (PSD95) or synapse-associated protein 90 (SAP90), is a scaffolding protein that clusters at synapses and plays an important role in synaptic development and plasticity. It is responsible for the membrane clustering and retention of many transporters and receptors such as potassium channels and PMCA4b, a P-type ion transport ATPase, among others. DLG4 is a member of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. DLG4 contains three PDZ domains. The SH3 domain of DLG4 binds and clusters the kainate subgroup of glutamate receptors via two proline-rich sequences in their C-terminal tail. It also binds AKAP79/150 (A-kinase anchoring protein). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 66

>gnl|CDD|212796 cd11862, SH3_MPP, Src Homology 3 domain of Membrane Protein, Palmitoylated (or MAGUK p55 subfamily member) proteins

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 50  VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSEC-GFIPSP 107
           VR    YD   D   P     +SF   + L I  + D NWW  R V + +   G IPS 
Sbjct: 2   VRALFDYDPEEDPLIPCKEAGLSFKKGDILQIVNQDDPNWWQARKVGDPNGRAGLIPSQ 60

The MPP/p55 subfamily of MAGUK (membrane-associated guanylate kinase) proteins includes at least eight vertebrate members (MPP1-7 and CASK), four Drosophila proteins (Stardust, Varicose, CASK and Skiff), and other similar proteins; they all contain one each of the core of three domains characteristic of MAGUK proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, most members except for MPP1 contain N-terminal L27 domains and some also contain a Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. CASK has an additional calmodulin-dependent kinase (CaMK)-like domain at the N-terminus. Members of this subfamily are scaffolding proteins that play important roles in regulating and establishing cell polarity, cell adhesion, and synaptic targeting and transmission, among others. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 9/57 (15%)

Query: 50  VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
            R    Y+   DD+       +SF   + + + EK D  WW G L   G   G  P+
Sbjct: 2   ARALYDYEAQDDDE-------LSFKKGDIITVLEKDDDGWWEGEL--NGGREGLFPA 49

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212969 cd12036, SH3_MPP5, Src Homology 3 domain of Membrane Protein, Palmitoylated 5 (or MAGUK p55 subfamily member 5)

 Score = 37.8 bits (88), Expect = 6e-04
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 50  VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSE-----CGFI 104
           VR +  YD   D   P     +SF   + LH+  + D NWW  +  +EG E      G I
Sbjct: 2   VRAHFDYDPEDDPYIPCRELGLSFQKGDILHVISQEDPNWW--QAYREGEEDNQSLAGLI 59

Query: 105 PSPV 108
           PS  
Sbjct: 60  PSKS 63

MPP5, also called PALS1 (Protein associated with Lin7) or Nagie oko protein in zebrafish or Stardust in Drosophila, is a scaffolding protein which associates with Crumbs homolog 1 (CRB1), CRB2, or CRB3 through its PDZ domain and with PALS1-associated tight junction protein (PATJ) or multi-PDZ domain protein 1 (MUPP1) through its L27 domain. The resulting tri-protein complexes are core proteins of the Crumb complex, which localizes at tight junctions or subapical regions, and is involved in the maintenance of apical-basal polarity in epithelial cells and the morphogenesis and function of photoreceptor cells. MPP5 is critical for the proper stratification of the retina and is also expressed in T lymphocytes where it is important for TCR-mediated activation of NFkB. Drosophila Stardust exists in several isoforms, some of which show opposing functions in photoreceptor cells, which suggests that the relative ratio of different Crumbs complexes regulates photoreceptor homeostasis. MPP5 contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 63

>gnl|CDD|212970 cd12037, SH3_MPP2, Src Homology 3 domain of Membrane Protein, Palmitoylated 2 (or MAGUK p55 subfamily member 2)

 Score = 37.2 bits (86), Expect = 8e-04
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 50  VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
           V+ +  YD S D   P     + F   + L I  + D NWW    V+ GS  G IPS
Sbjct: 2   VKCHFDYDPSSDSLIPCKEAGLKFRAGDLLQIVNQEDPNWWQACHVEGGS-AGLIPS 57

MPP2 is a scaffolding protein that interacts with the non-receptor tyrosine kinase c-Src in epithelial cells to negatively regulate its activity and morphological function. It is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212962 cd12029, SH3_DLG3, Src Homology 3 domain of Disks Large homolog 3

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 50  VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVK---EGSECGFIPS 106
           VR    YD + D   P  G  +SF   + LH+    D  WW  RLV    E  + G IPS
Sbjct: 5   VRALFDYDRTRDSCLPSQG--LSFSYGDILHVINASDDEWWQARLVTPHGESEQIGVIPS 62

Query: 107 PVKLE 111
             ++E
Sbjct: 63  KKRVE 67

DLG3, also called synapse-associated protein 102 (SAP102), is a scaffolding protein that clusters at synapses and plays an important role in synaptic development and plasticity. Mutations in DLG3 cause midgestational embryonic lethality in mice and may be associated with nonsyndromic X-linked mental retardation in humans. It interacts with the NEDD4 (neural precursor cell-expressed developmentally downregulated 4) family of ubiquitin ligases and promotes apical tight junction formation. DLG3 is a member of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. DLG3 contains three PDZ domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 67

>gnl|CDD|212779 cd11845, SH3_Src_like, Src homology 3 domain of Src kinase-like Protein Tyrosine Kinases

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 8/51 (15%)

Query: 56  YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
           Y+   DDD       +SF   + L I +  D +WW+ R +  G E G+IPS
Sbjct: 8   YEARTDDD-------LSFKKGDRLQILDDSDGDWWLARHLSTGKE-GYIPS 50

Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, Yes, and Brk. Src (or c-Src) proteins are cytoplasmic (or non-receptor) PTKs which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, Lyn, and Brk show a limited expression pattern. This subfamily also includes Drosophila Src42A, Src oncogene at 42A (also known as Dsrc41) which accumulates at sites of cell-cell or cell-matrix adhesion, and participates in Drosphila development and wound healing. It has been shown to promote tube elongation in the tracheal system, is essential for proper cell-cell matching during dorsal closure, and regulates cell-cell contacts in developing Drosophila eyes. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212964 cd12031, SH3_DLG1, Src Homology 3 domain of Disks Large homolog 1

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 50  VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVK---EGSECGFIPS 106
           VR    YD + D   P  G  ++F   + LH+    D  WW  R V    E  E G IPS
Sbjct: 5   VRALFDYDKTKDSGLPSQG--LNFKFGDILHVVNASDDEWWQARQVTADGESEEIGVIPS 62

Query: 107 PVKLE 111
             ++E
Sbjct: 63  KRRVE 67

DLG1, also called synapse-associated protein 97 (SAP97), is a scaffolding protein that clusters at synapses and plays an important role in synaptic development and plasticity. DLG1 plays roles in regulating cell polarity, proliferation, migration, and cycle progression. It interacts with AMPA-type glutamate receptors and is critical in their maturation and delivery to synapses. It also interacts with PKCalpha and promotes wound healing. DLG1 is a member of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. DLG1 contains three PDZ domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 67

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	510
KOG3812|consensus	475		100.0
KOG0609|consensus	542		100.0
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	99.97
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	99.96
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	99.95
PRK14737	186	gmk guanylate kinase; Provisional	99.95
PLN02772	398	guanylate kinase	99.94
KOG0708|consensus	359		99.94
KOG0707|consensus	231		99.88
KOG3812|consensus	475		99.88
PRK14738	206	gmk guanylate kinase; Provisional	99.86
KOG3580|consensus	1027		99.84
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	99.83
PRK00300	205	gmk guanylate kinase; Provisional	99.79
PF12052	42	VGCC_beta4Aa_N: Voltage gated calcium channel subu	99.7
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	99.67
PF12052	42	VGCC_beta4Aa_N: Voltage gated calcium channel subu	99.43
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.34
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.27
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.1
PRK04040	188	adenylate kinase; Provisional	99.03
PRK08356	195	hypothetical protein; Provisional	98.96
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	98.93
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	98.9
KOG2199|consensus	462		98.84
KOG4792|consensus	293		98.77
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	98.71
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	98.67
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	98.64
COG3709	192	Uncharacterized component of phosphonate metabolis	98.56
KOG1029|consensus	1118		98.43
KOG1118|consensus	366		98.42
KOG2070|consensus	661		98.39
PRK00698	205	tmk thymidylate kinase; Validated	98.13
KOG4226|consensus	379		98.13
PRK14731	208	coaE dephospho-CoA kinase; Provisional	97.85
PRK12339	197	2-phosphoglycerate kinase; Provisional	97.77
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	97.75
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.75
KOG3601|consensus	222		97.74
KOG0162|consensus	1106		97.73
PRK14732	196	coaE dephospho-CoA kinase; Provisional	97.66
KOG2856|consensus	472		97.62
PRK00131	175	aroK shikimate kinase; Reviewed	97.62
PRK04182	180	cytidylate kinase; Provisional	97.59
KOG4348|consensus	627		97.59
PRK06762	166	hypothetical protein; Provisional	97.58
PRK01184	184	hypothetical protein; Provisional	97.56
KOG3875|consensus	362		97.55
KOG4225|consensus	489		97.53
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.48
PRK13975	196	thymidylate kinase; Provisional	97.45
PRK03839	180	putative kinase; Provisional	97.44
PRK14532	188	adenylate kinase; Provisional	97.4
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	97.37
PRK14530	215	adenylate kinase; Provisional	97.33
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	97.33
PRK14531	183	adenylate kinase; Provisional	97.33
KOG2996|consensus	865		97.33
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	97.29
KOG4348|consensus	627		97.26
KOG0515|consensus	752		97.26
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.25
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.25
PHA02530	300	pseT polynucleotide kinase; Provisional	97.2
PTZ00451	244	dephospho-CoA kinase; Provisional	97.17
PRK08233	182	hypothetical protein; Provisional	97.16
PRK00279	215	adk adenylate kinase; Reviewed	97.15
KOG3655|consensus	484		97.14
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.14
PRK13808	333	adenylate kinase; Provisional	97.13
PRK05480	209	uridine/cytidine kinase; Provisional	97.13
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.1
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.09
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	97.08
KOG4226|consensus	379		97.04
KOG4225|consensus	489		97.01
PRK14734	200	coaE dephospho-CoA kinase; Provisional	97.01
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.96
PLN02422	232	dephospho-CoA kinase	96.96
KOG1264|consensus	1267		96.92
PRK05541	176	adenylylsulfate kinase; Provisional	96.91
KOG2546|consensus	483		96.9
PLN02200	234	adenylate kinase family protein	96.9
PRK13946	184	shikimate kinase; Provisional	96.89
PRK14730	195	coaE dephospho-CoA kinase; Provisional	96.84
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	96.79
PRK14527	191	adenylate kinase; Provisional	96.78
PRK13947	171	shikimate kinase; Provisional	96.76
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	96.73
PRK05057	172	aroK shikimate kinase I; Reviewed	96.72
KOG3632|consensus	1335		96.52
KOG4575|consensus	874		96.52
KOG1029|consensus	1118		96.5
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.46
PRK13974	212	thymidylate kinase; Provisional	96.45
KOG0197|consensus	468		96.42
PRK14526	211	adenylate kinase; Provisional	96.35
PRK02496	184	adk adenylate kinase; Provisional	96.34
KOG1843|consensus	473		96.32
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	96.32
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	96.31
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	96.31
PRK14733	204	coaE dephospho-CoA kinase; Provisional	96.3
PRK13973	213	thymidylate kinase; Provisional	96.28
PRK13976	209	thymidylate kinase; Provisional	96.2
PRK13949	169	shikimate kinase; Provisional	96.19
PLN02842	505	nucleotide kinase	96.15
PRK13948	182	shikimate kinase; Provisional	96.12
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	96.03
PLN02459	261	probable adenylate kinase	95.98
PRK12338	319	hypothetical protein; Provisional	95.97
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	95.94
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	95.93
PRK06696	223	uridine kinase; Validated	95.9
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	95.87
PLN02674	244	adenylate kinase	95.74
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	95.68
PRK00889	175	adenylylsulfate kinase; Provisional	95.54
PRK08118	167	topology modulation protein; Reviewed	95.47
PRK12337	475	2-phosphoglycerate kinase; Provisional	95.46
PRK07261	171	topology modulation protein; Provisional	95.44
PRK09825	176	idnK D-gluconate kinase; Provisional	95.41
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	95.34
PRK00625	173	shikimate kinase; Provisional	95.3
PRK04220	301	2-phosphoglycerate kinase; Provisional	95.25
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	95.23
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	95.14
KOG4278|consensus	1157		95.12
PTZ00088	229	adenylate kinase 1; Provisional	95.12
PRK06217	183	hypothetical protein; Validated	95.05
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	95.02
KOG3771|consensus	460		95.0
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	94.95
PRK14529	223	adenylate kinase; Provisional	94.9
PLN02924	220	thymidylate kinase	94.87
PRK03846	198	adenylylsulfate kinase; Provisional	94.72
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	94.69
KOG1702|consensus	264		94.57
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	94.55
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	94.53
PRK14528	186	adenylate kinase; Provisional	94.52
PRK11545	163	gntK gluconate kinase 1; Provisional	94.42
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	94.38
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	94.15
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	94.04
COG4639	168	Predicted kinase [General function prediction only	94.02
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	93.87
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	93.79
PHA00729	226	NTP-binding motif containing protein	93.75
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	93.72
KOG3347|consensus	176		93.51
COG0645	170	Predicted kinase [General function prediction only	93.36
KOG3557|consensus	721		93.32
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	93.25
KOG3354|consensus	191		93.24
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	93.23
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	93.2
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	93.19
PRK07933	213	thymidylate kinase; Validated	93.12
PRK03731	171	aroL shikimate kinase II; Reviewed	93.03
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	92.72
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	92.56
KOG3079|consensus	195		92.45
PRK00023	225	cmk cytidylate kinase; Provisional	92.41
KOG2222|consensus	848		92.4
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	92.28
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	92.24
PRK12288	347	GTPase RsgA; Reviewed	92.18
PRK00098	298	GTPase RsgA; Reviewed	92.06
PRK08099	399	bifunctional DNA-binding transcriptional repressor	92.05
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	91.99
cd01128	249	rho_factor Transcription termination factor rho is	91.69
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	91.63
PRK06620	214	hypothetical protein; Validated	91.39
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	91.38
PF00004	132	AAA: ATPase family associated with various cellula	91.33
PRK12289	352	GTPase RsgA; Reviewed	91.24
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	91.23
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	91.17
KOG4773|consensus	386		91.09
PLN02199	303	shikimate kinase	91.02
KOG3601|consensus	222		91.02
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	90.97
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	90.9
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	90.9
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	90.8
PLN02840	421	tRNA dimethylallyltransferase	90.78
PLN02165	334	adenylate isopentenyltransferase	90.74
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	90.55
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	90.39
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	90.34
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	90.01
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	89.92
PRK13342	413	recombination factor protein RarA; Reviewed	89.54
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	89.51
KOG3632|consensus	1335		89.44
COG1162	301	Predicted GTPases [General function prediction onl	89.17
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	89.12
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	88.95
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	88.84
PRK09087	226	hypothetical protein; Validated	88.77
PLN02318	656	phosphoribulokinase/uridine kinase	88.76
smart00382	148	AAA ATPases associated with a variety of cellular	88.72
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	88.72
PRK07429	327	phosphoribulokinase; Provisional	88.63
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	88.48
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	88.12
KOG2996|consensus	865		88.11
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	87.98
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	87.71
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	87.65
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	87.55
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	87.45
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	87.44
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	87.42
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	87.42
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	87.26
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	87.21
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	87.17
PRK12608	380	transcription termination factor Rho; Provisional	86.79
cd01881	176	Obg_like The Obg-like subfamily consists of five w	86.69
PRK00089	292	era GTPase Era; Reviewed	86.54
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	86.47
KOG1191|consensus	531		86.31
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	86.17
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	86.05
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	85.78
COG2256	436	MGS1 ATPase related to the helicase subunit of the	85.58
COG1100	219	GTPase SAR1 and related small G proteins [General	85.54
PF13555	62	AAA_29: P-loop containing region of AAA domain	85.54
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	85.09
COG3172	187	NadR Predicted ATPase/kinase involved in NAD metab	84.96
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	84.95
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	84.83
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	84.74
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	84.63
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	84.58
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	84.54
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	84.48
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	84.44
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	84.4
cd03115	173	SRP The signal recognition particle (SRP) mediates	84.36
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	84.34
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	84.31
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	84.24
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	84.23
PRK06761	282	hypothetical protein; Provisional	83.98
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	83.84
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	83.84
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	83.83
PRK13849	231	putative crown gall tumor protein VirC1; Provision	83.7
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	83.68
KOG3523|consensus	695		83.67
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	83.66
PRK12678	672	transcription termination factor Rho; Provisional	83.57
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	83.56
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	83.33
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	83.31
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	83.24
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	83.2
COG2884	223	FtsE Predicted ATPase involved in cell division [C	83.18
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	83.17
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	83.13
PRK04195	482	replication factor C large subunit; Provisional	83.08
PF00005	137	ABC_tran: ABC transporter This structure is on hol	82.93
COG4619	223	ABC-type uncharacterized transport system, ATPase	82.93
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	82.87
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	82.86
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	82.84
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	82.83
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	82.7
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	82.69
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	82.67
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	82.66
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	82.64
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	82.59
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	82.52
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	82.49
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	82.48
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	82.47
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	82.35
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	82.26
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	82.11
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	81.99
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	81.97
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	81.94
PF11302	75	DUF3104: Protein of unknown function (DUF3104); In	81.72
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	81.72
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	81.69
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	81.62
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	81.35
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	81.24
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	81.21
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	81.15
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	81.14
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	81.12
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	81.08
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	81.08
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	81.05
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	81.04
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	81.03
TIGR00767	415	rho transcription termination factor Rho. Members	81.02
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	80.9
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	80.85
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	80.8
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	80.76
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	80.7
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	80.68
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	80.65
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	80.65
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	80.61
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	80.58
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	80.52
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	80.46
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	80.45
KOG3220|consensus	225		80.34
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	80.27
PRK12298	390	obgE GTPase CgtA; Reviewed	80.24
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	80.23
KOG0738|consensus	491		80.21
COG3638	258	ABC-type phosphate/phosphonate transport system, A	80.18
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	80.17
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	80.04
PTZ00301	210	uridine kinase; Provisional	80.02

>KOG3812|consensus

Probab=100.00  E-value=6.5e-77  Score=598.25  Aligned_cols=252  Identities=70%  Similarity=1.048  Sum_probs=220.6

Q ss_pred             cCCCCCCCcCC--CCccchhhhHHHhHHHHHHHHHHHhhhccCCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEE
Q psy6613           4 GSAESNFSQPS--SDLSLDEEKETLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHI   81 (510)
Q Consensus         4 ~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~a~~~L~~a~~k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V   81 (510)
                      ||||||||||+  +|++||+|+|.+|+++|+||+.|||+|+.||++|.|||+.+|+|.-|+++|+++.+++|+..|+|||
T Consensus        13 ~sads~tS~pp~~sdv~leedre~~r~e~e~qA~~qLe~aK~KpVAFAV~tnv~Y~gslde~~Pv~g~aisF~~kDFlHI   92 (475)
T KOG3812|consen   13 GSADSYTSRPPSDSDVSLEEDREARRREAERQALRQLERAKRKPVAFAVRTNVSYDGSLDEDSPVQGHAISFEAKDFLHI   92 (475)
T ss_pred             ccccccccCCchhhhhhhhhhHHHHHHHHHHHHHHHHHhcccCCceEEEEeccccCCccCCCCCCCCceeeeccccceee
Confidence            79999999995  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCceEEEEccCCCceeeecChhHHHHHHHHhhhccCCCcccccCCCCCCCCCCCCCCCCCCCeEEecCcCChHHH
Q psy6613          82 KEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQARNPKLYSSKTSSTSNLGALSSDAPSPGMIIITRVTADISLA  161 (510)
Q Consensus        82 ~~~~d~~WWqar~v~~~~~~GlIPS~~~~Errr~~~~~kk~~~l~~sk~~s~~~~~~~~~d~Ps~~RpI~GPsGvGKsTL  161 (510)
                      .++++++||+||.|.++++.|||||+.++|..+++++++       ++++  .|.        +   . +|+.|      
T Consensus        93 keKynnDWWIGRlVkeg~e~gFiPsp~rLen~r~~~e~~-------~~~~--~n~--------s---s-l~~vg------  145 (475)
T KOG3812|consen   93 KEKYNNDWWIGRLVKEGCEIGFIPSPVRLENIRLQQEQS-------SKSS--GNS--------S---S-LGDVG------  145 (475)
T ss_pred             hhhcccchhHHHHhhcCCccccccchHHHHHHHhhhhhh-------cccC--CCc--------c---c-cCCcc------
Confidence            999999999999999999999999999999999887761       1110  000        0   0 01111      


Q ss_pred             HHHHhcCCCCceeeecCCCchhhhhhhcccHHHHHHHHHcCCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHH
Q psy6613         162 KRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRL  241 (510)
Q Consensus       162 ~~rLL~~P~~F~~sVshTTR~pFe~~I~TslesI~~vi~sGKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~r  241 (510)
                                        ||                                                            
T Consensus       146 ------------------~r------------------------------------------------------------  147 (475)
T KOG3812|consen  146 ------------------SR------------------------------------------------------------  147 (475)
T ss_pred             ------------------cC------------------------------------------------------------
Confidence                              11                                                            


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEEEeCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcccccCCcc
Q psy6613         242 IKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAPPQPLTLLPPRQLTAHQS  321 (510)
Q Consensus       242 Lr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~VIvNDdLd~A~~eL~~ileai~~a~h~p~~~p~~~~~~~~~~~~~~~~  321 (510)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (475)
T KOG3812|consen  148 --------------------------------------------------------------------------------  147 (475)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCCCCcccCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHhccCCCCCCCccccCCCCccCCCChhhhhhhccc
Q psy6613         322 VVIPPSPSMGSAESNFSQPSSDLSLDEEKETLRREKERQALSQLEKARVTDDNESIGNSRAGKNTLTTPTTKEKKKIFFK  401 (510)
Q Consensus       322 ~~~~~s~~~~s~~s~~s~ps~~~s~~~~~~~~~~~~e~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (510)
                                                                                       .+||++..+.|.- -
T Consensus       148 -----------------------------------------------------------------~stpp~ta~~kd~-~  161 (475)
T KOG3812|consen  148 -----------------------------------------------------------------RSTPPSTADQKDK-S  161 (475)
T ss_pred             -----------------------------------------------------------------CCCCCChhhhhhh-h
Confidence                                                                             0122222222210 1


Q ss_pred             ccCCCCCccccCCCcceEEeCCCCCCchhHHHHHHHHHHHHhhhcCCcEEEEEEecchhhHHhhccCCccccccccccCC
Q psy6613         402 KQETTTPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSLMSNPSKRAIMERSNS  481 (510)
Q Consensus       402 ~~~~~~~y~~~p~~rp~~~~gp~~~~~~~~~~m~~al~~~l~~~f~~~i~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  481 (510)
                      ++|++||||||||||||||||||||||||||||||||||||||||+|||+||||||||||||||++|||+|++||||+|+
T Consensus       162 ~~E~~pPYdVVPSmRPvVLvGPsLkgyevTdmmqkAlfd~lkhrF~grisitrVtaDIslakrS~lnnp~k~~~~eRsn~  241 (475)
T KOG3812|consen  162 ITEHVPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNT  241 (475)
T ss_pred             hcccCCccccCCCCCceEEecCccccccHHHHHHHHHHHHHHHhcCCceeEEEEeechhhhhhhhccCccceeeeeeccc
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHHhhcccccc
Q psy6613         482 RSSVLTEVQTEIERVYELASTLQVYY  507 (510)
Q Consensus       482 ~~~~~~~~~~e~~~i~~~~~~~~l~~  507 (510)
                      |+| +||||+||||||||||+||||+
T Consensus       242 Rss-laevqsEiErIfelarsLqLvv  266 (475)
T KOG3812|consen  242 RSS-LAEVQSEIERIFELARSLQLVV  266 (475)
T ss_pred             hhh-HHHHHHHHHHHHHHHhhceEEE
Confidence            988 9999999999999999999986

>KOG0609|consensus

Probab=100.00  E-value=3.8e-55  Score=462.83  Aligned_cols=295  Identities=20%  Similarity=0.267  Sum_probs=246.3

Q ss_pred             cCCCCCCCcCCCCccchhhhHHHhHHHHHHHHHHHhhhcc-------------CC-CeeEEEEeeccCCCCCCCCCCCCc
Q psy6613           4 GSAESNFSQPSSDLSLDEEKETLRREKERQALSQLEKARA-------------KN-VAFAVRTNVKYDGSIDDDSPVHGY   69 (510)
Q Consensus         4 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~a~~~L~~a~~-------------k~-~~~~VRAlfdY~~~~D~~iPc~e~   69 (510)
                      |.++--+.--.+|-++|.|+..+.+..=++.+..|..+.+             .. ...||||+|||||..|+.+||+|+
T Consensus       157 G~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfkiiP~~~~~~~~~~~~vra~FdYdP~~D~~IPCkEa  236 (542)
T KOG0609|consen  157 GMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFKIIPSYRPPPQQQVVFVRALFDYDPKEDDLIPCKEA  236 (542)
T ss_pred             CcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEEEcccccCCCceeeeeehhhcCcCcccCCcccchhc
Confidence            4444333333399999999999998888888888887761             11 238999999999999999999999


Q ss_pred             cccccCCceEEEEeecCCCceEEEEccC--CCceeeecChhHHHHHHHHhh-------hc-------cCCC----ccccc
Q psy6613          70 AVSFDIHEFLHIKEKYDSNWWIGRLVKE--GSECGFIPSPVKLENLRLQQT-------QA-------RNPK----LYSSK  129 (510)
Q Consensus        70 ~LsF~~GDiL~V~~~~d~~WWqar~v~~--~~~~GlIPS~~~~Errr~~~~-------~k-------k~~~----l~~sk  129 (510)
                      ||+|.+||||+|++++|.+||||+++++  ++.+|+|||+.++|||.+...       .+       |+++    +|..+
T Consensus       237 gl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qerr~a~~~~~~~~~~~~~~c~~l~kkkk~~~~~y~~~  316 (542)
T KOG0609|consen  237 GLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQERRVACLRREVSKEPEKTRCQRLSKKKKKKKSKYLGK  316 (542)
T ss_pred             CCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHHHHHHHHhhhcccCCcCchhcccchhhhhhhhhhhhh
Confidence            9999999999999999999999999984  468999999999999954311       10       1111    12222


Q ss_pred             CCCCCCCCCCCCCC----------CCCCCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-------------
Q psy6613         130 TSSTSNLGALSSDA----------PSPGMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-------------  183 (510)
Q Consensus       130 ~~s~~~~~~~~~d~----------Ps~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-------------  183 (510)
                          .+..++..++          |..+|++  +||.|||++.|+++|+. +|++|+++||||||+|             
T Consensus       317 ----~~~~~d~~~~~tYEEV~~~~~~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FV  392 (542)
T KOG0609|consen  317 ----HSAVFDQPELLTYEEVVRYPPFRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFV  392 (542)
T ss_pred             ----cchhhhccccccHHHHhhhcccccceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceee
Confidence                2333443332          6566765  99999999999999999 9999999999999999             


Q ss_pred             ----hhhhhc----------------ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHH
Q psy6613         184 ----VLTEVQ----------------TEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLI  242 (510)
Q Consensus       184 ----Fe~~I~----------------TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rL  242 (510)
                          |+++|+                |++++|+.++++||+||||+.||+  ++.+|+ +|.||||||+||+++.|++.+
T Consensus       393 Sk~~~e~dI~~~~~lE~GEy~~nlYGTs~dsVr~v~~~gKicvLdv~Pqa--lk~lRt~Ef~PyVIFI~pP~~~~~r~~r  470 (542)
T KOG0609|consen  393 SKEEMEADIRAGKFLEYGEYEGNLYGTSLDSVRNVIASGKICVLDVEPQA--LKVLRTAEFKPYVIFIAPPSLEELRALR  470 (542)
T ss_pred             ehHHHhhhhhcCCceecCcchhccccchHHHHHHHHHhCCEEEEecCHHH--hhhhhhhcccceEEEecCCCchhHHHHh
Confidence                666654                999999999999999999999999  999999 999999999999999999998


Q ss_pred             HhcCC------CcHHHHHHHH-HHHHHHHhcCCCCccEEEeCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy6613         243 KSRGK------SQTRHLNVQM-VAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAPPQP  307 (510)
Q Consensus       243 r~Rgt------~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvNDdLd~A~~eL~~ileai~~a~h~p~~~p~~  307 (510)
                      +.-..      -.+++..++| +.++.|++.|+|+||.||+|+|||+||++|+   .++..+..+|+|+|..
T Consensus       471 ~~~~~~~~~~~~~~d~~Lq~i~~eS~~ie~~yghyfD~iIvN~dld~t~~eL~---~~iekl~tepqWVPvs  539 (542)
T KOG0609|consen  471 KVAVMSTIVAKQFTDEDLQEIIDESARIEQQYGHYFDLIIVNSDLDKTFRELK---TAIEKLRTEPQWVPVS  539 (542)
T ss_pred             hhccccccccccCCHHHHHHHHHHHHHHHHHhhhheeEEEEcCcHHHHHHHHH---HHHHHhccCCceeeee
Confidence            76542      2357778888 9999999999999999999999999999999   7888999999999973

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=99.97  E-value=1.9e-31  Score=253.91  Aligned_cols=143  Identities=20%  Similarity=0.266  Sum_probs=127.9

Q ss_pred             CCCeE--EecCcCChHHHHHHHhcCCCCceeeecCCCchh-----------------hhhhhc----------------c
Q psy6613         146 PGMII--ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS-----------------VLTEVQ----------------T  190 (510)
Q Consensus       146 ~~RpI--~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p-----------------Fe~~I~----------------T  190 (510)
                      +|+++  +|||||||+||+++|++.. .|.++||||||+|                 |+++|.                |
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT   81 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGT   81 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccC
Confidence            35655  9999999999999999944 8999999999999                 555442                9


Q ss_pred             cHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCC
Q psy6613         191 EIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQ  268 (510)
Q Consensus       191 slesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~  268 (510)
                      ++..|.+++.+|++||||||+||  ++.+|. ....++|||.|||+++|++||++||+++.+.+.+|| .|..||+..  
T Consensus        82 ~~~~ve~~~~~G~~vildId~qG--a~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~~Ei~~~--  157 (191)
T COG0194          82 SREPVEQALAEGKDVILDIDVQG--ALQVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAKKEISHA--  157 (191)
T ss_pred             cHHHHHHHHhcCCeEEEEEehHH--HHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHH--
Confidence            99999999999999999999999  666666 558899999999999999999999999999999999 888899887  


Q ss_pred             CCccEEEeCCCHHHHHHHHHHHHHH
Q psy6613         269 EMFDVILDENQLEDACEHIAEYLEA  293 (510)
Q Consensus       269 ~~FD~VIvNDdLd~A~~eL~~ilea  293 (510)
                      ..|||||+|||++.|+.+|+.++.+
T Consensus       158 ~~fdyvivNdd~e~a~~~l~~ii~a  182 (191)
T COG0194         158 DEFDYVIVNDDLEKALEELKSIILA  182 (191)
T ss_pred             HhCCEEEECccHHHHHHHHHHHHHH
Confidence            6799999999999999999966544

>smart00072 GuKc Guanylate kinase homologues

Probab=99.96  E-value=6.8e-29  Score=233.87  Aligned_cols=145  Identities=23%  Similarity=0.317  Sum_probs=129.5

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc----------------c
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ----------------T  190 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~----------------T  190 (510)
                      +|+|  +||||+||+||+++|++ +|+.|.++++||||++                 |+..++                |
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt   81 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT   81 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence            5665  99999999999999999 8889999999999998                 443332                9


Q ss_pred             cHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCC
Q psy6613         191 EIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQE  269 (510)
Q Consensus       191 slesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~  269 (510)
                      ++++|++++++|++||||++++|  +..++. .++|++|||.|||.++|++||+.||.++.+.+.+||..+.++..++ +
T Consensus        82 ~~~~i~~~~~~~~~~ild~~~~~--~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~~~~~-~  158 (184)
T smart00072       82 SKETIRQVAEQGKHCLLDIDPQG--VKQLRKAQLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEAQEY-H  158 (184)
T ss_pred             CHHHHHHHHHcCCeEEEEECHHH--HHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh-c
Confidence            99999999999999999999999  777776 7899999999999999999999999999999999995566656555 8


Q ss_pred             CccEEEeCCCHHHHHHHHHHHHHHH
Q psy6613         270 MFDVILDENQLEDACEHIAEYLEAY  294 (510)
Q Consensus       270 ~FD~VIvNDdLd~A~~eL~~ileai  294 (510)
                      +||++|+|+|++.|+++|+++|+..
T Consensus       159 ~fd~~I~n~~l~~~~~~l~~~i~~~  183 (184)
T smart00072      159 LFDYVIVNDDLEDAYEELKEILEAE  183 (184)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHHhc
Confidence            8999999999999999999888764

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=99.95  E-value=4.5e-28  Score=227.56  Aligned_cols=144  Identities=19%  Similarity=0.336  Sum_probs=125.5

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc----------------c
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ----------------T  190 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~----------------T  190 (510)
                      +|||  +||+|+||+||.++|++ +|++|.++++||||+|                 |++++.                |
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt   81 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT   81 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence            5666  99999999999999999 9999999999999998                 444332                9


Q ss_pred             cHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCC
Q psy6613         191 EIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQ  268 (510)
Q Consensus       191 slesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~  268 (510)
                      ++++|..++++|++||||++++|  ++.++. .++|++|||.|||.++|++|++.||.++.+++..|+ .+..+++..  
T Consensus        82 ~~~~i~~~~~~gk~~il~~~~~g--~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~~~~~~~~~~~--  157 (183)
T PF00625_consen   82 SKSAIDKVLEEGKHCILDVDPEG--VKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERLERAEKEFEHY--  157 (183)
T ss_dssp             EHHHHHHHHHTTTEEEEEETHHH--HHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHHHHHHHHHGGG--
T ss_pred             ccchhhHhhhcCCcEEEEccHHH--HHHHHhcccCceEEEEEccchHHHHHHHhccccccHHHHHHHHHHHHHHHhHh--
Confidence            99999999999999999999999  788777 899999999999999999999999988888888888 444444443  


Q ss_pred             CCccEEEeCCCHHHHHHHHHHHHHHH
Q psy6613         269 EMFDVILDENQLEDACEHIAEYLEAY  294 (510)
Q Consensus       269 ~~FD~VIvNDdLd~A~~eL~~ileai  294 (510)
                      ..||+||+|++++.|+.+|+++|+.+
T Consensus       158 ~~fd~vi~n~~le~~~~~l~~ii~~~  183 (183)
T PF00625_consen  158 NEFDYVIVNDDLEEAVKELKEIIEQE  183 (183)
T ss_dssp             GGSSEEEECSSHHHHHHHHHHHHHHH
T ss_pred             hcCCEEEECcCHHHHHHHHHHHHHhC
Confidence            23999999999999999999998764

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.95  E-value=3.4e-27  Score=224.75  Aligned_cols=141  Identities=12%  Similarity=0.155  Sum_probs=121.9

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc----------------c
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ----------------T  190 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~----------------T  190 (510)
                      +++|  +||||+||+||+++|++ +|+ +.++++||||+|                 |++++.                |
T Consensus         4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~-~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt   82 (186)
T PRK14737          4 PKLFIISSVAGGGKSTIIQALLEEHPD-FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGT   82 (186)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhcCCc-cccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecC
Confidence            3554  99999999999999999 775 778899999998                 555542                9


Q ss_pred             cHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCc-eEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcC
Q psy6613         191 EIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSP-CIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCP  267 (510)
Q Consensus       191 slesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~P-ivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~  267 (510)
                      ++++|++++++|++||||+|++|  ++.++. ...+ ++|||.|||.++|++||..|+..+.+++.+|| .+..+  ..+
T Consensus        83 ~~~~i~~~~~~g~~~i~d~~~~g--~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e--~~~  158 (186)
T PRK14737         83 PKAFIEDAFKEGRSAIMDIDVQG--AKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIE--LDE  158 (186)
T ss_pred             cHHHHHHHHHcCCeEEEEcCHHH--HHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--Hhh
Confidence            99999999999999999999999  888887 4454 89999999999999999999999888999999 44444  445


Q ss_pred             CCCccEEEeCCCHHHHHHHHHHHHH
Q psy6613         268 QEMFDVILDENQLEDACEHIAEYLE  292 (510)
Q Consensus       268 ~~~FD~VIvNDdLd~A~~eL~~ile  292 (510)
                      .+.||+||+|+|+++|+.+|..+|.
T Consensus       159 ~~~~D~vI~N~dle~a~~ql~~ii~  183 (186)
T PRK14737        159 ANEFDYKIINDDLEDAIADLEAIIC  183 (186)
T ss_pred             hccCCEEEECcCHHHHHHHHHHHHh
Confidence            6899999999999999999996663

>PLN02772 guanylate kinase

Probab=99.94  E-value=1.2e-26  Score=242.95  Aligned_cols=144  Identities=20%  Similarity=0.289  Sum_probs=129.0

Q ss_pred             CCCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc----------------
Q psy6613         146 PGMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ----------------  189 (510)
Q Consensus       146 ~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~----------------  189 (510)
                      .+++|  +|||||||+||+++|++ +|..|.++++||||+|                 |+.++.                
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG  213 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG  213 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence            55666  89999999999999999 8888999999999999                 444332                


Q ss_pred             ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHh-c
Q psy6613         190 TEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQ-C  266 (510)
Q Consensus       190 TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq-~  266 (510)
                      |++++|+.++++|++||||+|++|  ++.++. .+.+++|||.|||+++|++||+.||+++.+.+.+|| .+..+|++ .
T Consensus       214 Tsk~~V~~vl~~Gk~vILdLD~qG--ar~Lr~~~l~~v~IFI~PPSlEeLe~RL~~RGteseE~I~kRL~~A~~Ei~~~~  291 (398)
T PLN02772        214 TSIEAVEVVTDSGKRCILDIDVQG--ARSVRASSLEAIFIFICPPSMEELEKRLRARGTETEEQIQKRLRNAEAELEQGK  291 (398)
T ss_pred             ccHHHHHHHHHhCCcEEEeCCHHH--HHHHHHhcCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999  777776 678999999999999999999999999999999999 66678875 4


Q ss_pred             CCCCccEEEeCCCHHHHHHHHHHHH
Q psy6613         267 PQEMFDVILDENQLEDACEHIAEYL  291 (510)
Q Consensus       267 ~~~~FD~VIvNDdLd~A~~eL~~il  291 (510)
                      ++++||++|+||||+.|+++|..+|
T Consensus       292 ~~~~fD~vIvNDdLe~A~~~L~~iL  316 (398)
T PLN02772        292 SSGIFDHILYNDNLEECYKNLKKLL  316 (398)
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHH
Confidence            5789999999999999999999655

>KOG0708|consensus

Probab=99.94  E-value=9.2e-27  Score=239.57  Aligned_cols=248  Identities=17%  Similarity=0.216  Sum_probs=193.6

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCC---ceeeecChhHHHHHHHHhhh---
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGS---ECGFIPSPVKLENLRLQQTQ---  119 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~---~~GlIPS~~~~Errr~~~~~---  119 (510)
                      ...||+++|||+...+  .|-...+++|..||++++.+..+..||++|++..++   ..|++|+....++|......   
T Consensus        65 ~~~~v~~~~d~d~~~~--~~~~~~~~~~~~~~i~~~~~~~~~e~~~~r~~s~~~~~~~~~~~~~~~~~~rr~r~r~k~~~  142 (359)
T KOG0708|consen   65 RCLYVDALFDYDLDRG--SPGYSRAQSFLYGQILHLISRSDDEWWQARHVSPRGEEKDVGLVPSKSRRARRVRLRLKRDS  142 (359)
T ss_pred             ceeEeeccccccccCC--CCCcchhhhhhhhhhhhccccccHHHHHhhccCCCccccccccccccccccccccccccccc
Confidence            3679999999999988  677788999999999999999999999999986544   68999999999887322111   


Q ss_pred             ---ccCCCcccccCCCCCCCCCC--CCC---C---------CCCCCeE--EecCcCChHHHHHHHhc-CCCCceeeecCC
Q psy6613         120 ---ARNPKLYSSKTSSTSNLGAL--SSD---A---------PSPGMII--ITRVTADISLAKRSLMS-NPSKRAIMERSN  179 (510)
Q Consensus       120 ---kk~~~l~~sk~~s~~~~~~~--~~d---~---------Ps~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshT  179 (510)
                         ++....+.++.++.......  ..+   .         +...|||  +||. .++  |.++|+. +|++|..|++||
T Consensus       143 f~~~~~~~~~~s~d~~~~~~~~~~~~~e~~~lsY~~V~~~~~~~~RPVlilg~~-~d~--l~~~Lv~e~~~kF~~C~~~t  219 (359)
T KOG0708|consen  143 FNSGRDFPFLLSKDGLDMSSDENELGKELSLLSYELVERLDSNYLRPVLILGPL-LDR--LLDNLVNEFPDKFKSCLPET  219 (359)
T ss_pred             ccccCCcccccCcccccccccccccccccccccchhhhhhhccccCceEeccch-HHH--HHHHHHHhhhccccccchhh
Confidence               01111111222110000000  000   0         3466776  7887 454  8899999 899999999999


Q ss_pred             Cchh---hhhhhc----------------ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHH
Q psy6613         180 SRSS---VLTEVQ----------------TEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQ  239 (510)
Q Consensus       180 TR~p---Fe~~I~----------------TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~  239 (510)
                      ||+.   |++.++                |++.+|++++++|+|||||+...|  ++.++. .++||+|||+|-|.+.++
T Consensus       220 ~~~~~~eme~~~k~~~fI~~~q~~~~~~~tsv~si~~va~k~~HCiLdv~~~a--i~rLq~~~IyPIvIfIr~ks~~~i~  297 (359)
T KOG0708|consen  220 LRPSREEMERDSKEETFIDAGQRSNGLYGTSVASIREVAEKGKHCLLDVGGDA--IRRLQRNQIYPIVIFIRVKSKKQIK  297 (359)
T ss_pred             hcccHHHhhhhcccCceeeecccCCCcceehHHHHHHHhcCCCceEEecCcch--HHHHHhcceeceEEEEEechHHHHH
Confidence            9988   665543                999999999999999999999998  888877 899999999999999999


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEEEeCCCHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy6613         240 RLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAPPQ  306 (510)
Q Consensus       240 ~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~VIvNDdLd~A~~eL~~ileai~~a~h~p~~~p~  306 (510)
                      .+...+   +.++..+.++++.++|+.++.+|..||.-++++..|.+++   ..|+....+.+|+|.
T Consensus       298 e~~~~~---t~~~ake~~e~a~klEqe~~~~~t~vv~~~s~e~i~~qvk---~~I~~Eq~k~iWVp~  358 (359)
T KOG0708|consen  298 ERNLKI---TGEQAKELLERARKLEQELDRYFTLVVQGGSLEELLSQVK---DIIEDEQKKVIWVPA  358 (359)
T ss_pred             HHhccc---chHHHHHHHHHHHHhHhhhhhceEEEEecccHHHHHHHHH---HHHHHhhCCeEeeeC
Confidence            886332   2334333449999999999999999999999999999999   777888999999985

>KOG0707|consensus

Probab=99.88  E-value=1.9e-22  Score=197.47  Aligned_cols=149  Identities=19%  Similarity=0.260  Sum_probs=129.8

Q ss_pred             CCCCCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc--------------
Q psy6613         144 PSPGMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ--------------  189 (510)
Q Consensus       144 Ps~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~--------------  189 (510)
                      |...+++  +||+|+||+|+.++|++ +|..|+++|+||||.|                 |+.++.              
T Consensus        34 p~~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~  113 (231)
T KOG0707|consen   34 PGDFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNK  113 (231)
T ss_pred             CCCCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhccc
Confidence            4444544  99999999999999999 8988999999999999                 444432              


Q ss_pred             --ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHH-HHHHHHh
Q psy6613         190 --TEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMV-AAEKLAQ  265 (510)
Q Consensus       190 --TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~-aa~eLEq  265 (510)
                        |++++|+++...|+.|++|||.+|  .+.++. .+++++|||.||+...+++||+.||++..+++.+|+. +-.+++.
T Consensus       114 yGtsi~av~~~~~~gk~~ildId~qg--~~~i~~~~~~~i~i~~~pps~~~~e~rl~~rgte~~~~l~~r~~sa~~e~~~  191 (231)
T KOG0707|consen  114 YGTSIAAVQRLMLSGKVCILDIDLQG--VQPIRATSLDAIYIFIKPPSIKILEERLRARGTETEESLLKRLKSAEEEFEI  191 (231)
T ss_pred             CCchHHHHHHHHhcCCcceeehhhcC--ceeeecCCCceEEEEecCCcchhHHHHhhccCcchHHHHHHHHHhhhhhhcc
Confidence              899999999999999999999999  777777 8999999999999999999999999999999999995 4445543


Q ss_pred             -cCCCCccEEEeC-CCHHHHHHHHHHHHHHH
Q psy6613         266 -CPQEMFDVILDE-NQLEDACEHIAEYLEAY  294 (510)
Q Consensus       266 -~~~~~FD~VIvN-DdLd~A~~eL~~ileai  294 (510)
                       ..+..||++|+| +++++|+.+|..++-.=
T Consensus       192 ~~~~g~~d~~~~ns~~lee~~kel~~~~~~~  222 (231)
T KOG0707|consen  192 LENSGSFDLVIVNSDRLEEAYKELEIFISSD  222 (231)
T ss_pred             ccCCccccceecCCCchhhhhhhhhhhhhHH
Confidence             456789999999 99999999999776543

>KOG3812|consensus

Probab=99.88  E-value=4.5e-22  Score=202.05  Aligned_cols=161  Identities=80%  Similarity=1.169  Sum_probs=152.2

Q ss_pred             CCCCeEEecCcCChHHHHHHHhcCCCCceeeecCCCchhhhhhhcccHHHHHHHHHcCCeEEEEeccCCchhHhhhcCCC
Q psy6613         145 SPGMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTINHPSQLAKTNLS  224 (510)
Q Consensus       145 s~~RpI~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~pFe~~I~TslesI~~vi~sGKi~ILDID~qg~~lq~lks~l~  224 (510)
                      +.||+.+....++.+..++.++++|.+..+.....||.. .++++++++.|++++++-+.|+||+|..+||.++.++.|.
T Consensus       206 F~grisitrVtaDIslakrS~lnnp~k~~~~eRsn~Rss-laevqsEiErIfelarsLqLvvlDadtInhPaql~ktsLa  284 (475)
T KOG3812|consen  206 FDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSS-LAEVQSEIERIFELARSLQLVVLDADTINHPAQLAKTSLA  284 (475)
T ss_pred             cCCceeEEEEeechhhhhhhhccCccceeeeeeccchhh-HHHHHHHHHHHHHHHhhceEEEecCCcCCCHHHhccCCCc
Confidence            467887777788888888888889999999999999976 7888999999999999999999999999999999999999


Q ss_pred             ceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEEEeCCCHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy6613         225 PCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAP  304 (510)
Q Consensus       225 PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~VIvNDdLd~A~~eL~~ileai~~a~h~p~~~  304 (510)
                      ||+|||+..|.++|.+++++||+.+.++++.+|.++++++||.+..||+||..+.|++||++|.+|||+||+++|+|+..
T Consensus       285 PI~v~ikvSspKvLqrLirsrGksq~K~lnvq~va~~klaQc~~e~FdvildENqLedAcehla~yLEaYw~AtH~p~~~  364 (475)
T KOG3812|consen  285 PIIVYIKVSSPKVLQRLIRSRGKSQSKHLNVQMVAADKLAQCPPEGFDVILDENQLEDACEHLAEYLEAYWRATHPPSSD  364 (475)
T ss_pred             ceEEEEEeCCHHHHHHHHHhcCchhhhhchHhhhhcchhhhCChhhhheeeccccHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CC
Q psy6613         305 PQ  306 (510)
Q Consensus       305 p~  306 (510)
                      |+
T Consensus       365 p~  366 (475)
T KOG3812|consen  365 PP  366 (475)
T ss_pred             cc
Confidence            84

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.86  E-value=9e-21  Score=182.49  Aligned_cols=147  Identities=14%  Similarity=0.177  Sum_probs=124.1

Q ss_pred             CCCCCeE--EecCcCChHHHHHHHhcCCCCceeeecCCCchh-----------------hhhhhc---------------
Q psy6613         144 PSPGMII--ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS-----------------VLTEVQ---------------  189 (510)
Q Consensus       144 Ps~~RpI--~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p-----------------Fe~~I~---------------  189 (510)
                      |..+++|  +||||+||+||++.|.+....|.++++||||++                 |+.++.               
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~Y   89 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYY   89 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCcee
Confidence            6666765  899999999999999883337999999999986                 433331               


Q ss_pred             -ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhc
Q psy6613         190 -TEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQC  266 (510)
Q Consensus       190 -TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~  266 (510)
                       |++++|..++++|++||||++++|  +..++. ..+.++||+.||+.++|.+|++.|+.++.+++.+|+ .+..++...
T Consensus        90 Gt~~~~i~~~~~~g~~vi~~~~~~g--~~~l~~~~pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl~~~~~e~~~~  167 (206)
T PRK14738         90 GVPKAPVRQALASGRDVIVKVDVQG--AASIKRLVPEAVFIFLAPPSMDELTRRLELRRTESPEELERRLATAPLELEQL  167 (206)
T ss_pred             cCCHHHHHHHHHcCCcEEEEcCHHH--HHHHHHhCCCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcc
Confidence             999999999999999999999999  777776 567799999999999999999999988888888999 555667655


Q ss_pred             CCCCccEEEeC--CCHHHHHHHHHHHHHHH
Q psy6613         267 PQEMFDVILDE--NQLEDACEHIAEYLEAY  294 (510)
Q Consensus       267 ~~~~FD~VIvN--DdLd~A~~eL~~ileai  294 (510)
                        +.||++++|  ++++++++++.++|..-
T Consensus       168 --~~~~~~iId~~~~~e~v~~~i~~~l~~~  195 (206)
T PRK14738        168 --PEFDYVVVNPEDRLDEAVAQIMAIISAE  195 (206)
T ss_pred             --cCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence              458999998  58999999999887654

>KOG3580|consensus

Probab=99.84  E-value=4.5e-20  Score=197.41  Aligned_cols=274  Identities=16%  Similarity=0.197  Sum_probs=194.1

Q ss_pred             CCccchhhhHHHhHHHHHHH-HHHHhhhc---------------------cCCCeeEEEEeeccCCCCCCCCCCCCcccc
Q psy6613          15 SDLSLDEEKETLRREKERQA-LSQLEKAR---------------------AKNVAFAVRTNVKYDGSIDDDSPVHGYAVS   72 (510)
Q Consensus        15 ~d~~~~~~~~~~~~~~~~~a-~~~L~~a~---------------------~k~~~~~VRAlfdY~~~~D~~iPc~e~~Ls   72 (510)
                      +|+||.-|.-..+|-..++| +.-|+-++                     .-..+||+|++|.|++...       .+|+
T Consensus       450 GDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ~k~Dvyr~iv~s~vGDSFyIRtHFE~Eke~P-------~gL~  522 (1027)
T KOG3580|consen  450 GDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQSKADVYRDIVASGVGDSFYIRTHFECEKETP-------QGLA  522 (1027)
T ss_pred             cceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhhhhhHHHHHHHhccCCceeEEeeeeeecCCCC-------cccc
Confidence            89999988877777663333 33333232                     4457999999999998764       4899


Q ss_pred             ccCCceEEEEeec-CC--CceEEEEccCCC---ceeeecChhHHHHHHHHhh-hccC-----------CCc-ccccCC--
Q psy6613          73 FDIHEFLHIKEKY-DS--NWWIGRLVKEGS---ECGFIPSPVKLENLRLQQT-QARN-----------PKL-YSSKTS--  131 (510)
Q Consensus        73 F~~GDiL~V~~~~-d~--~WWqar~v~~~~---~~GlIPS~~~~Errr~~~~-~kk~-----------~~l-~~sk~~--  131 (510)
                      |.+||||+|+++. |+  +-|.|-++|.+.   +.|+||++.+.|+....+. +++.           ..+ ..+|..  
T Consensus       523 FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPNksRAEQlASvq~aqr~~agGdRAdFWR~RGlRsg~Kknlr  602 (1027)
T KOG3580|consen  523 FTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPNKSRAEQLASVQNAQRDNAGGDRADFWRMRGLRSGVKKNLR  602 (1027)
T ss_pred             ccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCCccHHHHHHHHHhhccccccchHHHHHHHhhhhhhhhhhhh
Confidence            9999999999984 32  456666655432   6899999999999954322 2110           000 111111  


Q ss_pred             -CCCCCCCC--CCCC----------CCCCCeE--EecCcCChHHHHHHHhc-CCCCceeeec--CCCchhhhhh-hcccH
Q psy6613         132 -STSNLGAL--SSDA----------PSPGMII--ITRVTADISLAKRSLMS-NPSKRAIMER--SNSRSSVLTE-VQTEI  192 (510)
Q Consensus       132 -s~~~~~~~--~~d~----------Ps~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVs--hTTR~pFe~~-I~Tsl  192 (510)
                       +...+.+.  ...+          .+|.|||  +||..   .-++++|.+ .|+.|.++-+  .+.-+  +.. -...+
T Consensus       603 kSREDLsA~~vqtkfPaYERVvLREAgFkRPVvifGPiA---DiAmeKLa~E~PD~fqiAkteprdag~--~~stg~irL  677 (1027)
T KOG3580|consen  603 KSREDLSAVVVQTKFPAYERVVLREAGFKRPVVIFGPIA---DIAMEKLANELPDWFQIAKTEPRDAGS--EKSTGVIRL  677 (1027)
T ss_pred             hhhhhhhhceecccCCchhhhhhhhhcccCceEEeccHH---HHHHHHHhhhCcchhhhhccccccCCc--ccccceEEe
Confidence             11122111  1122          3577877  89984   456788998 9999987643  22111  100 11678


Q ss_pred             HHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCC
Q psy6613         193 ERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEM  270 (510)
Q Consensus       193 esI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~  270 (510)
                      .+|+.|+++.|+++||+.|.+  +..|+. ..+|||||+.|-|..-++.++....-.+. ...++| +.+++|...+.|+
T Consensus       678 ~TvrqiieqDKHALLDVTP~A--vdrLNY~QwypIVvff~PdSrqgvktmRqrL~P~Sr-~SsRkLy~~a~KL~K~~~HL  754 (1027)
T KOG3580|consen  678 NTVRQIIEQDKHALLDVTPKA--VDRLNYTQWYPIVVFFNPDSRQGVKTMRQRLAPTSR-KSSRKLYDQANKLKKTCAHL  754 (1027)
T ss_pred             hhhHHHHhcccchhhccCHHH--HhhhccceeeeEEEEeCCcchHHHHHHHHHhCcccc-hhHHHHHHHHHHHhhhchhh
Confidence            999999999999999999998  999988 89999999999998888877666544333 345677 9999999999999


Q ss_pred             ccEEE-eCCCHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy6613         271 FDVIL-DENQLEDACEHIAEYLEAYWRATHPPAAPPQ  306 (510)
Q Consensus       271 FD~VI-vNDdLd~A~~eL~~ileai~~a~h~p~~~p~  306 (510)
                      |+.+| .|.--|.+|..|+   +.|-+....++|+.-
T Consensus       755 FTaTInLNs~nD~Wyg~LK---~~iq~QQ~~~vWvsE  788 (1027)
T KOG3580|consen  755 FTATINLNSANDSWYGSLK---DTIQHQQGEAVWVSE  788 (1027)
T ss_pred             eEeeeccCCCChhHHHHHH---HHHHHhcCceeEeec
Confidence            99999 5667788899999   566678899999977

>TIGR03263 guanyl_kin guanylate kinase

Probab=99.83  E-value=8.7e-20  Score=169.33  Aligned_cols=137  Identities=18%  Similarity=0.239  Sum_probs=115.9

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc----------------ccHHHHH
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ----------------TEIERVY  196 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~----------------TslesI~  196 (510)
                      +||+|+|||||.+.|.. ++. +.+++++|||+|                 |...+.                ++.+.|.
T Consensus         7 ~G~~GsGKsTl~~~L~~~~~~-~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~i~   85 (180)
T TIGR03263         7 SGPSGVGKSTLVKALLEEDPN-LKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPKSPVE   85 (180)
T ss_pred             ECCCCCCHHHHHHHHHccCcc-ccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcHHHHH
Confidence            99999999999999999 664 778899999988                 222111                6789999


Q ss_pred             HHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEE
Q psy6613         197 ELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVI  274 (510)
Q Consensus       197 ~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~V  274 (510)
                      .++.+|++||+|+++.|  .+.++. ...++.||+.||+.+++++|++.|+.++.+.+.+|| .+..+++  +.+.||++
T Consensus        86 ~~~~~g~~vi~d~~~~~--~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~~~~~~--~~~~~d~~  161 (180)
T TIGR03263        86 EALAAGKDVLLEIDVQG--ARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAKKEIA--HADEFDYV  161 (180)
T ss_pred             HHHHCCCeEEEECCHHH--HHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh--ccccCcEE
Confidence            99999999999999998  776666 558899999999999999999999988888899999 4444444  35789999


Q ss_pred             EeCCCHHHHHHHHHHHHH
Q psy6613         275 LDENQLEDACEHIAEYLE  292 (510)
Q Consensus       275 IvNDdLd~A~~eL~~ile  292 (510)
                      |+|+|+++++.+|++++.
T Consensus       162 i~n~~~~~~~~~l~~~~~  179 (180)
T TIGR03263       162 IVNDDLEKAVEELKSIIL  179 (180)
T ss_pred             EECCCHHHHHHHHHHHHh
Confidence            999999999999997664

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.79  E-value=1.8e-18  Score=163.87  Aligned_cols=143  Identities=19%  Similarity=0.276  Sum_probs=120.0

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc----------------c
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ----------------T  190 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~----------------T  190 (510)
                      +++|  +||+|+|||||.+.|.. .| .|.+.+++|||+|                 |.+.+.                +
T Consensus         5 g~~i~i~G~sGsGKstl~~~l~~~~~-~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~   83 (205)
T PRK00300          5 GLLIVLSGPSGAGKSTLVKALLERDP-NLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT   83 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCc-cceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence            4554  99999999999999998 66 7999999999987                 212111                5


Q ss_pred             cHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCC
Q psy6613         191 EIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQ  268 (510)
Q Consensus       191 slesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~  268 (510)
                      +...|..++..|++||+|++++|  ...++. ...+++||+.||+.+++++|+..|+.++.+.+.+|+ .+..+++.  .
T Consensus        84 ~~~~i~~~l~~g~~vi~dl~~~g--~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~--~  159 (205)
T PRK00300         84 PRSPVEEALAAGKDVLLEIDWQG--ARQVKKKMPDAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAKAREEIAH--A  159 (205)
T ss_pred             cHHHHHHHHHcCCeEEEeCCHHH--HHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh--H
Confidence            68899999999999999999998  666666 458899999999999999999999988888888898 44444443  3


Q ss_pred             CCccEEEeCCCHHHHHHHHHHHHHHH
Q psy6613         269 EMFDVILDENQLEDACEHIAEYLEAY  294 (510)
Q Consensus       269 ~~FD~VIvNDdLd~A~~eL~~ileai  294 (510)
                      +.||+||+|+++++++.+|..+++.-
T Consensus       160 ~~~d~vi~n~~~e~~~~~l~~il~~~  185 (205)
T PRK00300        160 SEYDYVIVNDDLDTALEELKAIIRAE  185 (205)
T ss_pred             HhCCEEEECCCHHHHHHHHHHHHHHH
Confidence            77999999999999999999888654

>PF12052 VGCC_beta4Aa_N: Voltage gated calcium channel subunit beta domain 4Aa N terminal; InterPro: IPR000584 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers

Probab=99.70  E-value=4.6e-18  Score=123.75  Aligned_cols=41  Identities=73%  Similarity=1.034  Sum_probs=34.3

Q ss_pred             CCcccCCCCCC-CCCChhHhHHHHHHHHHHHHHHHHHHhccC
Q psy6613         331 GSAESNFSQPS-SDLSLDEEKETLRREKERQALSQLEKARVT  371 (510)
Q Consensus       331 ~s~~s~~s~ps-~~~s~~~~~~~~~~~~e~~a~~~l~~a~~~  371 (510)
                      |||+||+|||| ||||||||||++|||+|+||+.||||||+|
T Consensus         1 GSaDS~~S~pSdsDlsldedrEalRre~erqA~~QLekAk~K   42 (42)
T PF12052_consen    1 GSADSNYSRPSDSDLSLDEDREALRREAERQALAQLEKAKTK   42 (42)
T ss_dssp             -SSEE--SSS---EE-CHCCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CCCcccCCCCCccccchhhhhHHHHHHHHHHHHHHHHHhhcC
Confidence            68999999999 999999999999999999999999999986

Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. Co-expression of beta subunit mRNA with alpha-1 subunit mRNA in xenopus oocytes produces increased calcium currents, which are accompanied by a shift in the voltage-dependence of activation to more negative membrane potentials. Conversely, microinjection of antisense oligonucleotides to beta subunit mRNA produces decreased calcium currents and shifts voltage-dependent activation to more positive membrane potentials. There are four distinct beta subunits: beta-1, beta-2, beta-3 and beta-4; and the magnitude of the shift in the voltage-dependence of activation of change to membrane potentials varies with the particular subtype []. This entry represents the beta subunits found in L-type voltage-gated calcium channels.; GO: 0005245 voltage-gated calcium channel activity, 0006816 calcium ion transport, 0051925 regulation of calcium ion transport via voltage-gated calcium channel activity; PDB: 1T0J_A 1T0H_A 2D46_A 1T3S_A 1T3L_A 4DEY_A 4DEX_A 1VYT_B 1VYU_A.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=99.67  E-value=2.1e-16  Score=143.44  Aligned_cols=98  Identities=15%  Similarity=0.180  Sum_probs=87.9

Q ss_pred             EEecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc----------------ccHHHH
Q psy6613         150 IITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ----------------TEIERV  195 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~----------------TslesI  195 (510)
                      |+||+|+||+||.+.|.+ ++..|...++||||+|                 |.+++.                +..+.|
T Consensus         4 i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~~~i   83 (137)
T cd00071           4 LSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSKAAV   83 (137)
T ss_pred             EECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcHHHH
Confidence            389999999999999999 7888999999999988                 222221                789999


Q ss_pred             HHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEE
Q psy6613         196 YELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVI  274 (510)
Q Consensus       196 ~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~V  274 (510)
                      .+++++|++||||++.+|  ++.++. .+++++|||.||                                      |+|
T Consensus        84 ~~~~~~g~~~il~~~~~~--~~~l~~~~~~~~~I~i~~~--------------------------------------~~~  123 (137)
T cd00071          84 EEALAEGKIVILEIDVQG--ARQVKKSYPDAVSIFILPP--------------------------------------DYV  123 (137)
T ss_pred             HHHHhCCCeEEEEecHHH--HHHHHHcCCCeEEEEEECC--------------------------------------CeE
Confidence            999999999999999999  888887 789999999999                                      999


Q ss_pred             EeCCCHHHHHHHH
Q psy6613         275 LDENQLEDACEHI  287 (510)
Q Consensus       275 IvNDdLd~A~~eL  287 (510)
                      |+|||+|+|+++|
T Consensus       124 ~~~~~~~~~~~~~  136 (137)
T cd00071         124 IVNDDLEKAYEEL  136 (137)
T ss_pred             EeCCCHHHHHHhh
Confidence            9999999999987

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PF12052 VGCC_beta4Aa_N: Voltage gated calcium channel subunit beta domain 4Aa N terminal; InterPro: IPR000584 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers

Probab=99.43  E-value=6.7e-14  Score=102.16  Aligned_cols=41  Identities=76%  Similarity=1.064  Sum_probs=34.0

Q ss_pred             cCCCCCCCcCC-CCccchhhhHHHhHHHHHHHHHHHhhhccC
Q psy6613           4 GSAESNFSQPS-SDLSLDEEKETLRREKERQALSQLEKARAK   44 (510)
Q Consensus         4 ~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~a~~~L~~a~~k   44 (510)
                      ||||||+|||| +||+|++|+|++|+|+|+||+.||++|+.|
T Consensus         1 GSaDS~~S~pSdsDlsldedrEalRre~erqA~~QLekAk~K   42 (42)
T PF12052_consen    1 GSADSNYSRPSDSDLSLDEDREALRREAERQALAQLEKAKTK   42 (42)
T ss_dssp             -SSEE--SSS---EE-CHCCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CCCcccCCCCCccccchhhhhHHHHHHHHHHHHHHHHHhhcC
Confidence            89999999999 999999999999999999999999999875

Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. Co-expression of beta subunit mRNA with alpha-1 subunit mRNA in xenopus oocytes produces increased calcium currents, which are accompanied by a shift in the voltage-dependence of activation to more negative membrane potentials. Conversely, microinjection of antisense oligonucleotides to beta subunit mRNA produces decreased calcium currents and shifts voltage-dependent activation to more positive membrane potentials. There are four distinct beta subunits: beta-1, beta-2, beta-3 and beta-4; and the magnitude of the shift in the voltage-dependence of activation of change to membrane potentials varies with the particular subtype []. This entry represents the beta subunits found in L-type voltage-gated calcium channels.; GO: 0005245 voltage-gated calcium channel activity, 0006816 calcium ion transport, 0051925 regulation of calcium ion transport via voltage-gated calcium channel activity; PDB: 1T0J_A 1T0H_A 2D46_A 1T3S_A 1T3L_A 4DEY_A 4DEX_A 1VYT_B 1VYU_A.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.34  E-value=2.2e-11  Score=115.06  Aligned_cols=133  Identities=14%  Similarity=0.155  Sum_probs=94.9

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh--------------hhhhhc----------------ccHHHHHHHH
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS--------------VLTEVQ----------------TEIERVYELA  199 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p--------------Fe~~I~----------------TslesI~~vi  199 (510)
                      +||+|+|||||.+.|.. .+..|....+.+||++              |..++.                |+. +|.+.+
T Consensus         8 ~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~-~~~~~l   86 (186)
T PRK10078          8 MGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGI-EIDLWL   86 (186)
T ss_pred             ECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcH-HHHHHH
Confidence            99999999999999987 4446778888888875              111211                777 599999


Q ss_pred             HcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEEEeCC
Q psy6613         200 STLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDEN  278 (510)
Q Consensus       200 ~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~VIvND  278 (510)
                      +.|+.||++...+.  ...++. ...+++||+.++|.+++.+|+..|+..+.+++..||.... .   | ..+|++|+|+
T Consensus        87 ~~g~~VI~~G~~~~--~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~~~~~i~~rl~r~~-~---~-~~ad~~vi~~  159 (186)
T PRK10078         87 HAGFDVLVNGSRAH--LPQARARYQSALLPVCLQVSPEILRQRLENRGRENASEINARLARAA-R---Y-QPQDCHTLNN  159 (186)
T ss_pred             hCCCEEEEeChHHH--HHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCCCHHHHHHHHHHhh-h---h-ccCCEEEEeC
Confidence            99999998655433  333333 3356666677788999999999888777777888883221 1   1 2478666665


Q ss_pred             C--HHHHHHHHHHHH
Q psy6613         279 Q--LEDACEHIAEYL  291 (510)
Q Consensus       279 d--Ld~A~~eL~~il  291 (510)
                      +  ++++++++..++
T Consensus       160 ~~s~ee~~~~i~~~l  174 (186)
T PRK10078        160 DGSLRQSVDTLLTLL  174 (186)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            4  899999888554

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.27  E-value=1.1e-10  Score=108.77  Aligned_cols=134  Identities=16%  Similarity=0.180  Sum_probs=95.9

Q ss_pred             EecCcCChHHHHHHHhc-CCC--CceeeecCCCchh--------------hhhhhc----------------ccHHHHHH
Q psy6613         151 ITRVTADISLAKRSLMS-NPS--KRAIMERSNSRSS--------------VLTEVQ----------------TEIERVYE  197 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~--~F~~sVshTTR~p--------------Fe~~I~----------------TslesI~~  197 (510)
                      +||+|+||||+.+.|.. .+.  .+.+.+++|||+.              |..++.                ++. .+..
T Consensus         7 ~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~i~~   85 (179)
T TIGR02322         7 VGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA-EIDQ   85 (179)
T ss_pred             ECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH-HHHH
Confidence            99999999999999877 432  3567789999986              222110                455 5788


Q ss_pred             HHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEE-E
Q psy6613         198 LASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVI-L  275 (510)
Q Consensus       198 vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~V-I  275 (510)
                      .+.+|+.||+|.+...  ....+. ....++||+. ++.+++.+|++.|+....+.+..+|..... ...  ..+|++ |
T Consensus        86 ~~~~g~~vv~~g~~~~--~~~~~~~~~~~~~i~l~-~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~-~~~--~~~~~~vi  159 (179)
T TIGR02322        86 WLEAGDVVVVNGSRAV--LPEARQRYPNLLVVNIT-ASPDVLAQRLAARGRESREEIEERLARSAR-FAA--APADVTTI  159 (179)
T ss_pred             HHhcCCEEEEECCHHH--HHHHHHHCCCcEEEEEE-CCHHHHHHHHHHcCCCCHHHHHHHHHHHhh-ccc--ccCCEEEE
Confidence            8899999999998655  444444 3355788887 578999999999987777777777732221 111  457888 4


Q ss_pred             eCC-CHHHHHHHHHHHH
Q psy6613         276 DEN-QLEDACEHIAEYL  291 (510)
Q Consensus       276 vND-dLd~A~~eL~~il  291 (510)
                      +|+ ++++++.++.+++
T Consensus       160 ~~~~~~ee~~~~i~~~l  176 (179)
T TIGR02322       160 DNSGSLEVAGETLLRLL  176 (179)
T ss_pred             eCCCCHHHHHHHHHHHH
Confidence            454 7999999998655

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.10  E-value=1.1e-10  Score=88.12  Aligned_cols=48  Identities=29%  Similarity=0.579  Sum_probs=42.8

Q ss_pred             EEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecC
Q psy6613          51 RTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS  106 (510)
Q Consensus        51 RAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS  106 (510)
                      ||+|||.+..++       +|+|++||+|+|+++.+.+||.++..++ +..|+||+
T Consensus         1 ~Alydf~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~-~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFDAEDPD-------ELSFKKGDIIEVLEKSDDGWWKVRNEST-GKEGWVPS   48 (48)
T ss_dssp             EESSCBETSSTT-------BSEB-TTEEEEEEEESSSSEEEEEETTT-TEEEEEEG
T ss_pred             CCCeeeCCCCCC-------EEeEECCCEEEEEEecCCCEEEEEECCC-CcEEEeeC
Confidence            699999999875       6999999999999999999999999754 79999996

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>PRK04040 adenylate kinase; Provisional

Probab=99.03  E-value=2.7e-09  Score=102.20  Aligned_cols=139  Identities=16%  Similarity=0.169  Sum_probs=88.4

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeec-------------CCCchhhhh-------hhc-ccHHHHHHHHHcCCeEEEE
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMER-------------SNSRSSVLT-------EVQ-TEIERVYELASTLQLVVLD  208 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVs-------------hTTR~pFe~-------~I~-TslesI~~vi~sGKi~ILD  208 (510)
                      .|++|+||||+.+.|.+ .+..+.+.-.             +.+|..|..       .++ .-.+.|.+. ..++.+|+|
T Consensus         8 ~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~-~~~~~~~~~   86 (188)
T PRK04040          8 TGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEM-AGEGPVIVD   86 (188)
T ss_pred             EeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHh-hcCCCEEEe
Confidence            89999999999999987 5422332111             122222110       000 222333332 356779999


Q ss_pred             ecc---------CCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHh----cCCCcHHHHHHHHHHH-HHHH--hcCCCCc
Q psy6613         209 CDT---------INHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKS----RGKSQTRHLNVQMVAA-EKLA--QCPQEMF  271 (510)
Q Consensus       209 ID~---------qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~----Rgt~~~e~i~kRL~aa-~eLE--q~~~~~F  271 (510)
                      .+.         .|.+..+++. ....+++|..||+ +.|++|++.    |+.++.+.+..++..+ .+..  ..+.+.|
T Consensus        87 ~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~-~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~~~a~~~g~~  165 (188)
T PRK04040         87 THATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPD-EILMRRLRDETRRRDVETEEDIEEHQEMNRAAAMAYAVLTGAT  165 (188)
T ss_pred             eeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHH-HHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence            864         2334455554 4455666666666 889999864    8888888888888333 3322  2345679


Q ss_pred             cEEEeCCC--HHHHHHHHHHHH
Q psy6613         272 DVILDENQ--LEDACEHIAEYL  291 (510)
Q Consensus       272 D~VIvNDd--Ld~A~~eL~~il  291 (510)
                      +++|+|+|  ++.|+++|.++|
T Consensus       166 ~~iI~N~d~~~e~a~~~i~~ii  187 (188)
T PRK04040        166 VKIVENREGLLEEAAEEIVEVL  187 (188)
T ss_pred             EEEEECCCCCHHHHHHHHHHHh
Confidence            99999999  999999999765

>PRK08356 hypothetical protein; Provisional

Probab=98.96  E-value=1.5e-08  Score=96.60  Aligned_cols=136  Identities=12%  Similarity=0.151  Sum_probs=81.2

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchh-----------------hhhhhc----------------ccH---HH
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS-----------------VLTEVQ----------------TEI---ER  194 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p-----------------Fe~~I~----------------Tsl---es  194 (510)
                      +||+|+||+|+.+.|.++  .|. .+++++|.+                 |+.++.                |++   ..
T Consensus        11 ~G~~gsGK~t~a~~l~~~--g~~-~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~~~~~   87 (195)
T PRK08356         11 VGKIAAGKTTVAKFFEEK--GFC-RVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDILIRLA   87 (195)
T ss_pred             ECCCCCCHHHHHHHHHHC--CCc-EEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHHHHHH
Confidence            999999999999999432  465 788998643                 111110                331   22


Q ss_pred             HHHHHHcCCeEEEEeccCCchhHhhhc--CCCceEEEEeCCCHHHHHHHHHhcCCCc-----HHHHHHHH-HHHHHHHh-
Q psy6613         195 VYELASTLQLVVLDCDTINHPSQLAKT--NLSPCIVYLKISSPKVLQRLIKSRGKSQ-----TRHLNVQM-VAAEKLAQ-  265 (510)
Q Consensus       195 I~~vi~sGKi~ILDID~qg~~lq~lks--~l~PivIFIkPPS~e~L~~rLr~Rgt~~-----~e~i~kRL-~aa~eLEq-  265 (510)
                      +..+ +.+..+++| ....  ....+.  ....++|||.+|. +++.+|++.|+.+.     +.+..+++ .+..++.. 
T Consensus        88 ~~~~-~~~~~ivid-G~r~--~~q~~~l~~~~~~vi~l~~~~-~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~~l~~~  162 (195)
T PRK08356         88 VDKK-RNCKNIAID-GVRS--RGEVEAIKRMGGKVIYVEAKP-EIRFERLRRRGAEKDKGIKSFEDFLKFDEWEEKLYHT  162 (195)
T ss_pred             HHHh-ccCCeEEEc-CcCC--HHHHHHHHhcCCEEEEEECCH-HHHHHHHHhcCCccccccccHHHHHHHHHHHHHhhhh
Confidence            2222 222333333 2222  111111  2345889998874 88999999888753     22333555 33333322 


Q ss_pred             -cCCCCccEEEeC-CCHHHHHHHHHHHHHHH
Q psy6613         266 -CPQEMFDVILDE-NQLEDACEHIAEYLEAY  294 (510)
Q Consensus       266 -~~~~~FD~VIvN-DdLd~A~~eL~~ileai  294 (510)
                       .+...+|+||+| ++++++..+|..++..+
T Consensus       163 ~~~~~~aD~vI~N~~~~e~~~~~i~~~~~~~  193 (195)
T PRK08356        163 TKLKDKADFVIVNEGTLEELRKKVEEILREL  193 (195)
T ss_pred             hhHHHhCcEEEECCCCHHHHHHHHHHHHHHh
Confidence             223679999998 69999999999777544

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=98.93  E-value=7.1e-10  Score=85.90  Aligned_cols=52  Identities=27%  Similarity=0.515  Sum_probs=43.8

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEE-eecCCCceEEEEccCCCceeeecChhHH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIK-EKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~-~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      |+||++||.+..+.       +|+|++||+|+|+ ++.+++||.++.   +|..|+||+..+.
T Consensus         1 ~~~a~~d~~~~~~~-------~Ls~~~Gd~i~v~~~~~~~~ww~~~~---~g~~G~~P~~~v~   53 (55)
T PF07653_consen    1 YYRAIFDYVAEDPD-------ELSFKKGDVIEVLGEKDDDGWWLGEN---NGRRGWFPSSYVE   53 (55)
T ss_dssp             EEEESSSBESSSTT-------B-EB-TTEEEEEEEEECSTSEEEEEE---TTEEEEEEGGGEE
T ss_pred             CEEEeEEECCCCCC-------ceEEecCCEEEEEEeecCCCEEEEEE---CCcEEEEcHHHEE
Confidence            68999999997654       5999999999999 888999999998   5789999998654

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=98.90  E-value=2e-09  Score=82.11  Aligned_cols=47  Identities=28%  Similarity=0.601  Sum_probs=40.9

Q ss_pred             EeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChh
Q psy6613          52 TNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPV  108 (510)
Q Consensus        52 AlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~  108 (510)
                      |+|+|.+..++       +|+|++||+|.|+.+.+++||.|++   +++.|+||+..
T Consensus         1 Al~~y~~~~~d-------ELs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~y   47 (49)
T PF14604_consen    1 ALYDYEAQDPD-------ELSFKKGDVITVLEKSDDGWWYGRN---TGRTGLFPANY   47 (49)
T ss_dssp             ESSCBCSSSTT-------B-EB-TTEEEEEEEESSTSEEEEEE---TTEEEEEEGGG
T ss_pred             CCccCCCCCcC-------EeeEcCCCEEEEEEeCCCCEEEEEE---CCEEEEECHHh
Confidence            78999999875       5999999999999999999999997   57999999875

...

>KOG2199|consensus

Probab=98.84  E-value=8.6e-10  Score=115.15  Aligned_cols=59  Identities=25%  Similarity=0.534  Sum_probs=51.2

Q ss_pred             CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHHHH
Q psy6613          45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENL  113 (510)
Q Consensus        45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~Err  113 (510)
                      ++..-|||||||.+.++.       +|+|++||||+|++..|+|||.|++   .+..|+|||+.-.-..
T Consensus       213 ~~~rkVRALYDFeAaE~n-------ELsFkaGdIItVLd~s~~~WWKG~~---~~~~GlFPsnfVT~~l  271 (462)
T KOG2199|consen  213 TVVRKVRALYDFEAAEDN-------ELSFKAGDIITVLDDSDPNWWKGEN---HRGIGLFPSNFVTADL  271 (462)
T ss_pred             ccchhhhhhhcccccCCC-------ccceecCcEEEEcccCCcchhcccc---CCcccccchhhhhhhh
Confidence            344569999999999986       5999999999999999999999998   5689999998765554

>KOG4792|consensus

Probab=98.77  E-value=3.2e-09  Score=104.28  Aligned_cols=61  Identities=28%  Similarity=0.500  Sum_probs=54.8

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHHHHHHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQ  116 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~Errr~~  116 (510)
                      ..||||+|||.|.+.+|+       .|++|+||.|+++.+..||.||+  ..|..|+||.+.-+..+...
T Consensus       124 ~~~vr~~fdF~G~deeDL-------PFkkGeiL~I~~K~eeqWW~Arn--s~Gk~GmIPvpYVe~~~~~~  184 (293)
T KOG4792|consen  124 AEYVRALFDFNGNDEEDL-------PFKKGEILRIRDKPEEQWWNARN--SEGKRGMIPVPYVEKYRPAS  184 (293)
T ss_pred             hhheeeeeccCCCccccC-------CcccCcEEEEecCcHHHhhhhhc--cCCcccceechHHHhhhhhh
Confidence            679999999999998874       49999999999999999999998  46899999999999887554

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=98.71  E-value=2.1e-07  Score=87.12  Aligned_cols=136  Identities=16%  Similarity=0.046  Sum_probs=84.7

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-CCCCce-eeec---CCCchhh----------------hh----hh-cccHHHHHHH
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-NPSKRA-IMER---SNSRSSV----------------LT----EV-QTEIERVYEL  198 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~F~-~sVs---hTTR~pF----------------e~----~I-~TslesI~~v  198 (510)
                      +++|  +||+|+||||+.+.|.+ .+..|. +.+-   .+....+                .+    .+ .+..+.+...
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~   81 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAAM   81 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHHH
Confidence            4555  89999999999999987 443221 1110   0111000                00    11 2677889999


Q ss_pred             HHcCCeEEEEeccCCchhHhhh----c--CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCcc
Q psy6613         199 ASTLQLVVLDCDTINHPSQLAK----T--NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFD  272 (510)
Q Consensus       199 i~sGKi~ILDID~qg~~lq~lk----s--~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD  272 (510)
                      +++|+.||+|....+  ...++    .  ....++||+.+| .++|.+|+..|+..     ..++...+.-....+..||
T Consensus        82 l~~G~~VIvD~~~~~--~~~~r~~~~~~~~~~~~~v~l~~~-~~~l~~R~~~R~~~-----~~~~~~~~~~~~~~~~~~d  153 (175)
T cd00227          82 ARAGANVIADDVFLG--RAALQDCWRSFVGLDVLWVGVRCP-GEVAEGRETARGDR-----VPGQARKQARVVHAGVEYD  153 (175)
T ss_pred             HhCCCcEEEeeeccC--CHHHHHHHHHhcCCCEEEEEEECC-HHHHHHHHHhcCCc-----cchHHHHHHHHhcCCCcce
Confidence            999999999988763  22222    2  223567888887 58999999998743     1334222111122247789


Q ss_pred             EEEeCC--CHHHHHHHHHHH
Q psy6613         273 VILDEN--QLEDACEHIAEY  290 (510)
Q Consensus       273 ~VIvND--dLd~A~~eL~~i  290 (510)
                      ++|.++  +.+++.+++...
T Consensus       154 l~iDts~~s~~e~a~~i~~~  173 (175)
T cd00227         154 LEVDTTHKTPIECARAIAAR  173 (175)
T ss_pred             EEEECCCCCHHHHHHHHHHh
Confidence            999876  588888888744

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>smart00326 SH3 Src homology 3 domains

Probab=98.67  E-value=5.5e-08  Score=72.93  Aligned_cols=53  Identities=30%  Similarity=0.525  Sum_probs=45.6

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .+++|+|+|.+..+       ..|+|++||++.|++..+++||.+++.+  ++.|+||+...
T Consensus         3 ~~~~a~~~~~~~~~-------~~l~~~~Gd~v~v~~~~~~~w~~~~~~~--~~~G~vP~~~v   55 (58)
T smart00326        3 PQVRALYDYTAQDP-------DELSFKKGDIITVLEKSDDGWWKGRLGR--GKEGLFPSNYV   55 (58)
T ss_pred             cEEEEeeeeCCCCC-------CCCCCCCCCEEEEEEcCCCCeEEEEeCC--CCEEEEchHHE
Confidence            46889999999654       3699999999999999999999999854  78999998753

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=98.64  E-value=5.2e-08  Score=72.35  Aligned_cols=51  Identities=35%  Similarity=0.662  Sum_probs=44.5

Q ss_pred             EEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        50 VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ++|+|+|.+..++       +|+|.+||++.|++..+++||.+++.+  ++.|+||....
T Consensus         2 ~~a~~~~~~~~~~-------~l~~~~Gd~v~v~~~~~~~w~~~~~~~--~~~G~vP~~~v   52 (54)
T cd00174           2 VRALYDYDARDPD-------ELSFKKGDIIEVLEKSDDGWWEGRLLG--GKRGLFPSNYV   52 (54)
T ss_pred             EEEEEeeCCCCCC-------CCCCCCCCEEEEEEcCCCCeEEEEECC--CCEEEEccccC
Confidence            6899999998874       699999999999999889999999853  28999998754

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=98.56  E-value=1.2e-06  Score=83.20  Aligned_cols=140  Identities=18%  Similarity=0.187  Sum_probs=96.3

Q ss_pred             CCCeE--EecCcCChHHHHHHHhc-CCC--CceeeecCCCchh--------------hhhh-----hc----------cc
Q psy6613         146 PGMII--ITRVTADISLAKRSLMS-NPS--KRAIMERSNSRSS--------------VLTE-----VQ----------TE  191 (510)
Q Consensus       146 ~~RpI--~GPsGvGKsTL~~rLL~-~P~--~F~~sVshTTR~p--------------Fe~~-----I~----------Ts  191 (510)
                      .+++|  +||||+||.||+.-+.. .+.  +|.++-...||+.              |...     +.          --
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygi   83 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGI   83 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccC
Confidence            36766  99999999999987665 433  4888888889987              2211     00          11


Q ss_pred             HHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCC
Q psy6613         192 IERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEM  270 (510)
Q Consensus       192 lesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~  270 (510)
                      =.+|..-+..|.+||....=-.  +-..+. +..-.+|.|. -++++|.+||..||.++.+++..||..+.....   .-
T Consensus        84 p~eId~wl~~G~vvl~NgSRa~--Lp~arrry~~Llvv~it-a~p~VLaqRL~~RGREs~eeI~aRL~R~a~~~~---~~  157 (192)
T COG3709          84 PAEIDLWLAAGDVVLVNGSRAV--LPQARRRYPQLLVVCIT-ASPEVLAQRLAERGRESREEILARLARAARYTA---GP  157 (192)
T ss_pred             chhHHHHHhCCCEEEEeccHhh--hHHHHHhhhcceeEEEe-cCHHHHHHHHHHhccCCHHHHHHHHHhhccccc---CC
Confidence            2458888999999999886533  444444 2233333333 357899999999999999999999933332222   35


Q ss_pred             ccEEEeCCC--HHHHHHHHHHHH
Q psy6613         271 FDVILDENQ--LEDACEHIAEYL  291 (510)
Q Consensus       271 FD~VIvNDd--Ld~A~~eL~~il  291 (510)
                      +|.+-+||+  ++.|.++|..-|
T Consensus       158 ~dv~~idNsG~l~~ag~~ll~~l  180 (192)
T COG3709         158 GDVTTIDNSGELEDAGERLLALL  180 (192)
T ss_pred             CCeEEEcCCCcHHHHHHHHHHHH
Confidence            677666544  999999888444

>KOG1029|consensus

Probab=98.43  E-value=8.8e-08  Score=106.52  Aligned_cols=54  Identities=24%  Similarity=0.534  Sum_probs=49.0

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      +-|-|+|||.++.|+       +|+|++||||-|+++++++||+|.+   +|..|||||++-+.
T Consensus      1054 ~qviamYdY~AqndD-------ELsF~kgdiI~VlnkdepeWW~Ge~---ng~sGLFPSNYV~k 1107 (1118)
T KOG1029|consen 1054 CQVIAMYDYEAQNDD-------ELSFKKGDIINVLNKDEPEWWSGER---NGKSGLFPSNYVQK 1107 (1118)
T ss_pred             ceeEEeeccccCCcc-------cccccCCCEEEecCCCChhhhcccc---cCccccCccccccc
Confidence            457899999999987       5999999999999999999999987   57999999998754

>KOG1118|consensus

Probab=98.42  E-value=8.6e-08  Score=97.76  Aligned_cols=52  Identities=17%  Similarity=0.406  Sum_probs=46.4

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChh
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPV  108 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~  108 (510)
                      ..+|||+|||+|..+       .+|.|+.||+|.++++-|+|||.|...   |..|+||+++
T Consensus       306 ~p~cralYdFepenE-------gEL~fkeGDlI~l~~QIdenWyeG~~~---g~sG~FPvnY  357 (366)
T KOG1118|consen  306 QPCCRALYDFEPENE-------GELDFKEGDLITLTNQIDENWYEGEKH---GESGMFPVNY  357 (366)
T ss_pred             chhheeeeccCCCCC-------CccCcccCceeeehhhcCcchhhheec---CccCccccce
Confidence            347999999999976       579999999999999999999999994   5699999875

>KOG2070|consensus

Probab=98.39  E-value=3.1e-07  Score=98.37  Aligned_cols=61  Identities=26%  Similarity=0.553  Sum_probs=53.6

Q ss_pred             cCCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHHHH
Q psy6613          43 AKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENL  113 (510)
Q Consensus        43 ~k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~Err  113 (510)
                      ....++.|||-|.|.+...+       +|+|.+||||+|+...+++||.|..   +|+.|||||.+-.|-.
T Consensus        13 ~s~~pLvvrAkf~F~gsNnD-------ELsf~KgDvItVTq~eeGGWWEGTl---ng~TGWFPsnYV~eik   73 (661)
T KOG2070|consen   13 NSNNPLVVRAKFNFQGSNND-------ELSFSKGDVITVTQVEEGGWWEGTL---NGRTGWFPSNYVREIK   73 (661)
T ss_pred             CCCCceEEEEEeecccCCCc-------eeccccCCEEEEEEeccCcceeccc---cCccCccchHHHHHHh
Confidence            34456789999999999876       5999999999999999999999998   6789999999987754

>PRK00698 tmk thymidylate kinase; Validated

Probab=98.13  E-value=3.1e-05  Score=73.03  Aligned_cols=144  Identities=18%  Similarity=0.132  Sum_probs=80.2

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh--------hhhhh---------------------cccHHH
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS--------VLTEV---------------------QTEIER  194 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p--------Fe~~I---------------------~Tsles  194 (510)
                      +++|  .||.|+||||+.+.|.+ ... .+.. .++++.|        |...+                     .+..+.
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~-~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   80 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELLEQ-QGRD-VVFTREPGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEV   80 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHH-cCCc-eeEeeCCCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH
Confidence            3444  89999999999998876 211 1111 1222222        10000                     023344


Q ss_pred             HHHHHHcCCeEEEE------eccCCch-------hHhhhc----CCCc-eEEEEeCCCHHHHHHHHHhcCCCcH-----H
Q psy6613         195 VYELASTLQLVVLD------CDTINHP-------SQLAKT----NLSP-CIVYLKISSPKVLQRLIKSRGKSQT-----R  251 (510)
Q Consensus       195 I~~vi~sGKi~ILD------ID~qg~~-------lq~lks----~l~P-ivIFIkPPS~e~L~~rLr~Rgt~~~-----e  251 (510)
                      |...+.+|+++|+|      +..++..       ...+..    .+.| ++||+..|. +++.+|+..|+..+.     .
T Consensus        81 i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~-~~~~~Rl~~R~~~~~~~~~~~  159 (205)
T PRK00698         81 IKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPP-EVGLARIRARGELDRIEQEGL  159 (205)
T ss_pred             HHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCH-HHHHHHHHhcCCcchhhhhhH
Confidence            55566789999999      4443300       011111    1334 567776665 888999998874321     1


Q ss_pred             HHHHHH-HHHHHHHhcCCCCccEEEeC--CCHHHHHHHHHHHHHHHH
Q psy6613         252 HLNVQM-VAAEKLAQCPQEMFDVILDE--NQLEDACEHIAEYLEAYW  295 (510)
Q Consensus       252 ~i~kRL-~aa~eLEq~~~~~FD~VIvN--DdLd~A~~eL~~ileai~  295 (510)
                      +..+++ ..-..+...  ..++++++|  .++++..+++..+|..+.
T Consensus       160 ~~~~~~~~~y~~~~~~--~~~~~~~Id~~~~~e~v~~~i~~~i~~~~  204 (205)
T PRK00698        160 DFFERVREGYLELAEK--EPERIVVIDASQSLEEVHEDILAVIKAWL  204 (205)
T ss_pred             HHHHHHHHHHHHHHHh--CCCeEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence            334455 333444433  234566665  568989999987776653

>KOG4226|consensus

Probab=98.13  E-value=1.2e-06  Score=88.39  Aligned_cols=64  Identities=25%  Similarity=0.475  Sum_probs=52.5

Q ss_pred             hhhccCCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEee--cCCCceEEEEccCCCceeeecChhHHH
Q psy6613          39 EKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK--YDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        39 ~~a~~k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~--~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ..+...-+.-.|.|||.|+...|.       +|+|++||.|+|+++  .|++||.+|+.  .|.+||+|.+..+.
T Consensus       183 ~n~~~s~vl~vVvaLYsFsssnde-------ELsFeKGerleivd~Pe~DPdWwkarn~--~G~vGLVPrNYv~v  248 (379)
T KOG4226|consen  183 SNGQGSRVLHVVVALYSFSSSNDE-------ELSFEKGERLEIVDKPENDPDWWKARNA--RGQVGLVPRNYVVV  248 (379)
T ss_pred             cCCCCceEEEEEEEEecccCCChh-------hcccccCceeEeccCCCCCchHHhhccc--CCccceeecceEEE
Confidence            333344455568999999999986       599999999999997  68999999985  57999999887655

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=97.85  E-value=0.00016  Score=70.24  Aligned_cols=68  Identities=9%  Similarity=0.139  Sum_probs=50.1

Q ss_pred             EEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCC-CHHHHHHHHHHHHHHHHH
Q psy6613         227 IVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVILDEN-QLEDACEHIAEYLEAYWR  296 (510)
Q Consensus       227 vIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvND-dLd~A~~eL~~ileai~~  296 (510)
                      .|++..++.+++.+|+..|+..+.+.+.+|+ .+....+..  ..+|+||+|+ ++++...++..+++.+..
T Consensus       136 ~ii~V~a~~e~~~~Rl~~R~~~s~e~~~~Ri~~q~~~~~~~--~~ad~vI~N~g~~e~l~~~i~~~~~~~~~  205 (208)
T PRK14731        136 FIVVVAADTELRLERAVQRGMGSREEIRRRIAAQWPQEKLI--ERADYVIYNNGTLDELKAQTEQLYQVLLQ  205 (208)
T ss_pred             eEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHcCChHHHH--HhCCEEEECCCCHHHHHHHHHHHHHHHHH
Confidence            4444577788999999999888888888888 333222322  4689999985 789999999988776643

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=97.77  E-value=0.00024  Score=69.00  Aligned_cols=92  Identities=10%  Similarity=0.154  Sum_probs=58.6

Q ss_pred             HHHHHHcCCeEEEEeccCCchhHhhhc--CCCceEEEEeCCCHHHHHHHHHhcCCCc-----HHHHHH---HH--HHHHH
Q psy6613         195 VYELASTLQLVVLDCDTINHPSQLAKT--NLSPCIVYLKISSPKVLQRLIKSRGKSQ-----TRHLNV---QM--VAAEK  262 (510)
Q Consensus       195 I~~vi~sGKi~ILDID~qg~~lq~lks--~l~PivIFIkPPS~e~L~~rLr~Rgt~~-----~e~i~k---RL--~aa~e  262 (510)
                      +...+..|..+|+|.-...  -..+..  ....+++|+..++.+.+++|+..|+...     .+.-.+   .+  -+..-
T Consensus        90 a~~~l~~G~sVIvEgv~l~--p~~~~~~~~~~v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~~~~~~~ir~i~~~l  167 (197)
T PRK12339         90 IRRALLNGEDLVIESLYFH--PPMIDENRTNNIRAFYLYIRDAELHRSRLADRINYTHKNSPGKRLAEHLPEYRTIMDYS  167 (197)
T ss_pred             HHHHHHcCCCEEEEecCcC--HHHHHHHHhcCeEEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHHH
Confidence            5668889999999986655  233332  3346788888899999999999887533     121111   11  11111


Q ss_pred             HHhcCCCCcc-EEEeCCCHHHHHHHHHHH
Q psy6613         263 LAQCPQEMFD-VILDENQLEDACEHIAEY  290 (510)
Q Consensus       263 LEq~~~~~FD-~VIvNDdLd~A~~eL~~i  290 (510)
                      ++++  ..++ -||.|+|+|++.+.+.+.
T Consensus       168 ~~~a--~~~~i~~i~~~~~~~~~~~~~~~  194 (197)
T PRK12339        168 IADA--RGYNIKVIDTDNYREARNPLLDP  194 (197)
T ss_pred             HHHH--HHcCCCeecCccHHHHHHHHHHH
Confidence            2332  2233 366899999999988843

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=97.75  E-value=0.00035  Score=66.98  Aligned_cols=83  Identities=16%  Similarity=0.234  Sum_probs=53.6

Q ss_pred             CeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHH-HHHHHHhcCCCCccEEEeCC-C
Q psy6613         203 QLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMV-AAEKLAQCPQEMFDVILDEN-Q  279 (510)
Q Consensus       203 Ki~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~-aa~eLEq~~~~~FD~VIvND-d  279 (510)
                      +.||+|+..--   + ... .+.-.+|+|..| .++..+|+..|+..+.+....|+. +....+.  ....|+||.|+ +
T Consensus       107 ~~vv~e~pll~---e-~~~~~~~D~vi~V~a~-~e~~~~Rl~~R~~~s~e~~~~ri~~Q~~~~~~--~~~ad~vI~N~g~  179 (194)
T PRK00081        107 PYVVLDIPLLF---E-NGLEKLVDRVLVVDAP-PETQLERLMARDGLSEEEAEAIIASQMPREEK--LARADDVIDNNGD  179 (194)
T ss_pred             CEEEEEehHhh---c-CCchhhCCeEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHHhCCHHHH--HHhCCEEEECCCC
Confidence            68898885521   1 111 223467777776 666777888887667777777773 2222222  24569999997 7


Q ss_pred             HHHHHHHHHHHHH
Q psy6613         280 LEDACEHIAEYLE  292 (510)
Q Consensus       280 Ld~A~~eL~~ile  292 (510)
                      +++...++..+++
T Consensus       180 ~e~l~~qv~~i~~  192 (194)
T PRK00081        180 LEELRKQVERLLQ  192 (194)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999888886654

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.75  E-value=0.00038  Score=64.61  Aligned_cols=136  Identities=7%  Similarity=0.078  Sum_probs=73.3

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCC---Cc------hh--------hhhhhccc----H----HHHHHHHHcCCeE
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSN---SR------SS--------VLTEVQTE----I----ERVYELASTLQLV  205 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshT---TR------~p--------Fe~~I~Ts----l----esI~~vi~sGKi~  205 (510)
                      +||+|+||||+.++|.+... +  ....+   .|      .+        |......+    .    +.+...+..|+.+
T Consensus         9 ~G~~GsGKsTl~~~l~~~~g-~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   85 (188)
T TIGR01360         9 VGGPGSGKGTQCEKIVEKYG-F--THLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTSKGF   85 (188)
T ss_pred             ECCCCCCHHHHHHHHHHHhC-C--cEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcCCeE
Confidence            89999999999999986211 1  11111   01      11        11000011    1    2233334568999


Q ss_pred             EEEeccCCchhHhhh---cC-CCc-eEEEEeCCCHHHHHHHHHhcCC------CcHHHHHHHHH-HHHH---HHhcCCCC
Q psy6613         206 VLDCDTINHPSQLAK---TN-LSP-CIVYLKISSPKVLQRLIKSRGK------SQTRHLNVQMV-AAEK---LAQCPQEM  270 (510)
Q Consensus       206 ILDID~qg~~lq~lk---s~-l~P-ivIFIkPPS~e~L~~rLr~Rgt------~~~e~i~kRL~-aa~e---LEq~~~~~  270 (510)
                      |+|--+..  .....   .. ..| ++||+..| .+++.+|+..|+.      ++.+.+.+|+. .-.+   +...|.+.
T Consensus        86 i~dg~~~~--~~q~~~~~~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~~  162 (188)
T TIGR01360        86 LIDGYPRE--VKQGEEFERRIGPPTLVLYFDCS-EDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYETK  162 (188)
T ss_pred             EEeCCCCC--HHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhC
Confidence            99987765  32222   22 235 45666665 6888888877763      23456677772 2222   22223222


Q ss_pred             ccEEEeC--CCHHHHHHHHHHHHH
Q psy6613         271 FDVILDE--NQLEDACEHIAEYLE  292 (510)
Q Consensus       271 FD~VIvN--DdLd~A~~eL~~ile  292 (510)
                      =+++++|  .+.++.++++..+|+
T Consensus       163 ~~~~~id~~~~~~~v~~~i~~~l~  186 (188)
T TIGR01360       163 GKLRKINAEGTVDDVFLQVCTAID  186 (188)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHh
Confidence            2455554  346777777776554

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>KOG3601|consensus

Probab=97.74  E-value=1.2e-05  Score=78.65  Aligned_cols=54  Identities=11%  Similarity=0.333  Sum_probs=47.5

Q ss_pred             CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChh
Q psy6613          45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPV  108 (510)
Q Consensus        45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~  108 (510)
                      +...|++|+|||++..+.       +|.|++||+++|++..+..||.|+.   .|+.|+||...
T Consensus       161 ~~~~yqQa~~df~~~pp~-------ql~f~~gq~~~v~~~ss~~ww~Gs~---lg~agiFpagy  214 (222)
T KOG3601|consen  161 PTNYYQQALYDFQPQPPG-------QLAFRRGQQIQVLDSSSPFWWFGSK---LGRAGIFPAGY  214 (222)
T ss_pred             ccchhhhhcCCCCCCCch-------hhccccCCcceeecCCCcchhhccc---cCceeeecCcc
Confidence            467789999999988764       6999999999999999999999998   46899999754

>KOG0162|consensus

Probab=97.73  E-value=1.9e-05  Score=88.20  Aligned_cols=51  Identities=25%  Similarity=0.543  Sum_probs=44.7

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChh
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPV  108 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~  108 (510)
                      -.++|+|||.+++-+       +|+|++||||+|+..+-.+||+|+.   +|..||+|...
T Consensus      1052 p~~~A~Y~y~gq~~d-------Els~~~~diIei~~edpSGWw~gk~---~~keG~~P~~Y 1102 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVD-------ELSFKKGDIIEIMREDPSGWWLGKL---NGKEGLFPGNY 1102 (1106)
T ss_pred             cceeeeccCCCCCcc-------cccccCCCEEEEeccCCCcchhhcc---CCccccccccc
Confidence            357899999999543       6999999999999999999999995   67899999765

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=97.66  E-value=0.00057  Score=66.14  Aligned_cols=90  Identities=11%  Similarity=0.075  Sum_probs=55.0

Q ss_pred             HcCCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCC
Q psy6613         200 STLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVILDEN  278 (510)
Q Consensus       200 ~sGKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvND  278 (510)
                      .+++.||+|+..--   +.--..+.-.+|||..|.-..++ |+..|+..+.+....|+ .+....+.  ....|+||.|+
T Consensus       101 ~~~~~vi~e~pLL~---E~~~~~~~D~vi~V~a~~e~r~~-RL~~R~g~s~e~a~~ri~~Q~~~~~k--~~~aD~vI~N~  174 (196)
T PRK14732        101 AEGKLVIWEVPLLF---ETDAYTLCDATVTVDSDPEESIL-RTISRDGMKKEDVLARIASQLPITEK--LKRADYIVRND  174 (196)
T ss_pred             hcCCcEEEEeeeee---EcCchhhCCEEEEEECCHHHHHH-HHHHcCCCCHHHHHHHHHHcCCHHHH--HHhCCEEEECC
Confidence            35678998886521   11001334678999998655554 55555555667777787 32211122  25679999997


Q ss_pred             -CHHHHHHHHHHHHHHHH
Q psy6613         279 -QLEDACEHIAEYLEAYW  295 (510)
Q Consensus       279 -dLd~A~~eL~~ileai~  295 (510)
                       +++....++..+++.|.
T Consensus       175 ~~~~~l~~~v~~l~~~~~  192 (196)
T PRK14732        175 GNREGLKEECKILYSTLL  192 (196)
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence             67777777776655543

>KOG2856|consensus

Probab=97.62  E-value=2.2e-05  Score=82.10  Aligned_cols=54  Identities=30%  Similarity=0.477  Sum_probs=46.3

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCC-CceEEEEccCCCceeeecChhHH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDS-NWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~-~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ..|||||||.|++.+       +|+|+.||.|+++...|. +|-+||.  +.|++||.|.+.-+
T Consensus       415 v~vraLYDY~gqE~D-------ElsfkaGd~l~kl~eeDeqGWC~Grl--~~G~vGLyPAnYVe  469 (472)
T KOG2856|consen  415 VRVRALYDYAGQEGD-------ELSFKAGDELEKLEEEDEQGWCKGRL--DSGRVGLYPANYVE  469 (472)
T ss_pred             eeEEeeeccCccccc-------chhhccccHhhhcCCccccccccccc--cCCcccccchhhhh
Confidence            569999999999976       599999999999998665 7889988  35899999987654

>PRK00131 aroK shikimate kinase; Reviewed

Probab=97.62  E-value=0.00068  Score=61.82  Aligned_cols=139  Identities=21%  Similarity=0.195  Sum_probs=74.3

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeee---cCCCchh----hhhh----h-cccHHHHHHHHHcCCeEEEEeccCC----
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIME---RSNSRSS----VLTE----V-QTEIERVYELASTLQLVVLDCDTIN----  213 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sV---shTTR~p----Fe~~----I-~TslesI~~vi~sGKi~ILDID~qg----  213 (510)
                      +|++|+||||+.+.|-+ ..-.|.-.-   ...+..+    +...    . ....+.+.+++.... +|+......    
T Consensus        10 ~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~-~vi~~g~~~~~~~   88 (175)
T PRK00131         10 IGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGKSIPEIFEEEGEAAFRELEEEVLAELLARHN-LVISTGGGAVLRE   88 (175)
T ss_pred             EcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCC-CEEEeCCCEeecH
Confidence            89999999999998877 321121110   0000000    1000    0 023345666665433 455543211    


Q ss_pred             chhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCC---C---cHHHHHHHH-HHHHHHHhcCCCCccEEEe--CCCHHHHH
Q psy6613         214 HPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGK---S---QTRHLNVQM-VAAEKLAQCPQEMFDVILD--ENQLEDAC  284 (510)
Q Consensus       214 ~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt---~---~~e~i~kRL-~aa~eLEq~~~~~FD~VIv--NDdLd~A~  284 (510)
                      ...+.++  -..++|||.. +.+.+.+|+..+..   .   .......++ .....   .|...+|++|.  +-+++++.
T Consensus        89 ~~r~~l~--~~~~~v~l~~-~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~dl~idt~~~~~~e~~  162 (175)
T PRK00131         89 ENRALLR--ERGTVVYLDA-SFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDP---LYEEVADITVETDGRSPEEVV  162 (175)
T ss_pred             HHHHHHH--hCCEEEEEEC-CHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHH---HHHhhcCeEEeCCCCCHHHHH
Confidence            0012222  2457888877 46778888865442   1   111222223 22222   23356899996  45679999


Q ss_pred             HHHHHHHHHHHH
Q psy6613         285 EHIAEYLEAYWR  296 (510)
Q Consensus       285 ~eL~~ileai~~  296 (510)
                      +.+.++|+.||+
T Consensus       163 ~~I~~~v~~~~~  174 (175)
T PRK00131        163 NEILEKLEAAWR  174 (175)
T ss_pred             HHHHHHHHhhcc
Confidence            999999999996

>PRK04182 cytidylate kinase; Provisional

Probab=97.59  E-value=0.0024  Score=58.72  Aligned_cols=139  Identities=16%  Similarity=0.169  Sum_probs=75.6

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCC-Cchh----------hhhhhc------ccH-HHHHHHHHcCCeEEEEeccC
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSN-SRSS----------VLTEVQ------TEI-ERVYELASTLQLVVLDCDTI  212 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshT-TR~p----------Fe~~I~------Tsl-esI~~vi~sGKi~ILDID~q  212 (510)
                      +|++|+||||+.+.|.+... +.+.-... -|..          |.+...      ..+ ..+..+...+..||++-...
T Consensus         6 ~G~~GsGKstia~~la~~lg-~~~id~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~g~~~   84 (180)
T PRK04182          6 SGPPGSGKTTVARLLAEKLG-LKHVSAGEIFRELAKERGMSLEEFNKYAEEDPEIDKEIDRRQLEIAEKEDNVVLEGRLA   84 (180)
T ss_pred             ECCCCCCHHHHHHHHHHHcC-CcEecHHHHHHHHHHHcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCEEEEEeec
Confidence            89999999999999986211 11111000 0110          100000      111 22334443566778775432


Q ss_pred             CchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHH-----HHHHHHhcC------CCCccEEEeCC--C
Q psy6613         213 NHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMV-----AAEKLAQCP------QEMFDVILDEN--Q  279 (510)
Q Consensus       213 g~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~-----aa~eLEq~~------~~~FD~VIvND--d  279 (510)
                      +   -+++ ...-++|||.+| .+++.+|+..|+..+.......+.     ........|      .+.||++|.++  +
T Consensus        85 ~---~~~~-~~~~~~V~l~a~-~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~~idt~~~~  159 (180)
T PRK04182         85 G---WMAK-DYADLKIWLKAP-LEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDLSIYDLVINTSRWD  159 (180)
T ss_pred             c---eEec-CCCCEEEEEECC-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEEEECCCCC
Confidence            2   1222 223477898886 777888887776544443333331     112223333      26899999864  6


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy6613         280 LEDACEHIAEYLEAYW  295 (510)
Q Consensus       280 Ld~A~~eL~~ileai~  295 (510)
                      ++++++.+.++++.+-
T Consensus       160 ~~~~~~~I~~~~~~~~  175 (180)
T PRK04182        160 PEGVFDIILTAIDKLL  175 (180)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8999999887776543

>KOG4348|consensus

Probab=97.59  E-value=4.8e-05  Score=81.03  Aligned_cols=50  Identities=26%  Similarity=0.517  Sum_probs=44.5

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEee--cCCCceEEEEccCCCceeeecCh
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK--YDSNWWIGRLVKEGSECGFIPSP  107 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~--~d~~WWqar~v~~~~~~GlIPS~  107 (510)
                      -|+|.+|-|+++.|+       +|+|+.||||+.+.+  .|.+||.|..   +|+.|+||-+
T Consensus       262 eycrv~F~Ye~qndD-------ELt~KEgdil~lItK~cgdaGWweGEL---nGk~GvFPDN  313 (627)
T KOG4348|consen  262 EYCRVKFVYEPQNDD-------ELTLKEGDILILITKNCGDAGWWEGEL---NGKKGVFPDN  313 (627)
T ss_pred             hheeeeeeecCCCcc-------ceeeccccEEEEecccccccceeeeee---cCccccCCch
Confidence            489999999999997       599999999999985  5789999998   6789999965

>PRK06762 hypothetical protein; Provisional

Probab=97.58  E-value=0.00075  Score=62.14  Aligned_cols=132  Identities=12%  Similarity=0.055  Sum_probs=69.7

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchhhhhh------hc--ccHHHHHHHHHcCCeEEEEeccCCch----hH
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSSVLTE------VQ--TEIERVYELASTLQLVVLDCDTINHP----SQ  217 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~pFe~~------I~--TslesI~~vi~sGKi~ILDID~qg~~----lq  217 (510)
                      .|++|+||||+.+.|.+ .+..+.+.-...-|..+...      ..  .-...++..++.|..||+|.-.....    .+
T Consensus         8 ~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~vild~~~~~~~~~~~~~   87 (166)
T PRK06762          8 RGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGPGNLSIDLIEQLVRYGLGHCEFVILEGILNSDRYGPMLK   87 (166)
T ss_pred             ECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCCCCCcCHHHHHHHHHHHHhCCCEEEEchhhccHhHHHHHH
Confidence            89999999999999987 54322222111112111000      00  11233445577899999987542200    11


Q ss_pred             hhhcCC--CceEEEEeCCCHHHHHHHHHhcCCC---cHHHHHHHHHHHHHHHhcCCCCccEEEeCCC--HHHHHHHHH
Q psy6613         218 LAKTNL--SPCIVYLKISSPKVLQRLIKSRGKS---QTRHLNVQMVAAEKLAQCPQEMFDVILDENQ--LEDACEHIA  288 (510)
Q Consensus       218 ~lks~l--~PivIFIkPPS~e~L~~rLr~Rgt~---~~e~i~kRL~aa~eLEq~~~~~FD~VIvNDd--Ld~A~~eL~  288 (510)
                      .+....  ...+||+.+| .++..+|+..|+..   ..+.+..++..-..+     +.+|++|++++  +++.++++.
T Consensus        88 ~l~~~~~~~~~~v~Ldap-~e~~~~R~~~R~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~i~  159 (166)
T PRK06762         88 ELIHLFRGNAYTYYFDLS-FEETLRRHSTRPKSHEFGEDDMRRWWNPHDTL-----GVIGETIFTDNLSLKDIFDAIL  159 (166)
T ss_pred             HHHHhcCCCeEEEEEeCC-HHHHHHHHhcccccccCCHHHHHHHHhhcCCc-----CCCCeEEecCCCCHHHHHHHHH
Confidence            122222  3367888876 66777777777542   233333333322222     34688887655  555555554

>PRK01184 hypothetical protein; Provisional

Probab=97.56  E-value=0.0012  Score=61.79  Aligned_cols=93  Identities=17%  Similarity=0.237  Sum_probs=52.4

Q ss_pred             CCeEEEEeccCCchhHhhhcCC--CceEEEEeCCCHHHHHHHHHhcCCC----cHHHHHHHHHHHHH--HHhcCCCCccE
Q psy6613         202 LQLVVLDCDTINHPSQLAKTNL--SPCIVYLKISSPKVLQRLIKSRGKS----QTRHLNVQMVAAEK--LAQCPQEMFDV  273 (510)
Q Consensus       202 GKi~ILDID~qg~~lq~lks~l--~PivIFIkPPS~e~L~~rLr~Rgt~----~~e~i~kRL~aa~e--LEq~~~~~FD~  273 (510)
                      |..||+|.-..-.-.+.++..+  ..++|||..| .++..+|+..|+..    +.+.+..|+.....  ++..+ ..=|+
T Consensus        80 ~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~-~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~~~-~~ad~  157 (184)
T PRK01184         80 DEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAP-PEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGEVI-ALADY  157 (184)
T ss_pred             CCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECC-HHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHHHH-HhcCE
Confidence            6788888642110022233222  2367888765 55666677767632    23455555522111  11111 34589


Q ss_pred             EEeCC-CHHHHHHHHHHHHHHHHH
Q psy6613         274 ILDEN-QLEDACEHIAEYLEAYWR  296 (510)
Q Consensus       274 VIvND-dLd~A~~eL~~ileai~~  296 (510)
                      +|.|+ ++++...++..+++.+..
T Consensus       158 vI~N~~~~~~l~~~v~~~~~~~~~  181 (184)
T PRK01184        158 MIVNDSTLEEFRARVRKLLERILR  181 (184)
T ss_pred             EEeCCCCHHHHHHHHHHHHHHHhc
Confidence            99876 799999999987776654

>KOG3875|consensus

Probab=97.55  E-value=1.6e-05  Score=81.59  Aligned_cols=72  Identities=18%  Similarity=0.208  Sum_probs=54.2

Q ss_pred             HHHHHHHH-HhhhccCCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCC-----CceEEEEccCCCceee
Q psy6613          30 KERQALSQ-LEKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDS-----NWWIGRLVKEGSECGF  103 (510)
Q Consensus        30 ~~~~a~~~-L~~a~~k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~-----~WWqar~v~~~~~~Gl  103 (510)
                      .+.+|+++ -..|+.-.+..+.||+|||.+.+.       .+|+|++||+|+|..++|.     +||+.+.. +++..|+
T Consensus       250 ~s~~~q~~q~n~a~~~dp~~~arA~YdF~a~np-------~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~-dg~~tG~  321 (362)
T KOG3875|consen  250 YSKEAQESQRNWAKGIDPHEFARALYDFVARNP-------VELSLKKGDMLAIASKEDQQGVRCEGWLLATR-DGGTTGL  321 (362)
T ss_pred             HHHHHHHHhhCcCcCCChHHHHHHHhhhhcCCH-------HHhhhhcCchhhcccccccCCCCCcceeeeec-cCCeeee
Confidence            34555555 333433334467999999999865       4799999999999998654     69999987 5679999


Q ss_pred             ecChhH
Q psy6613         104 IPSPVK  109 (510)
Q Consensus       104 IPS~~~  109 (510)
                      ||.+.-
T Consensus       322 iP~NYv  327 (362)
T KOG3875|consen  322 IPINYV  327 (362)
T ss_pred             eehhhh
Confidence            998764

>KOG4225|consensus

Probab=97.53  E-value=5.7e-05  Score=80.52  Aligned_cols=54  Identities=20%  Similarity=0.394  Sum_probs=47.9

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ...||+|+|.+++..       +|+|.+|||+.|+.+-|.||..|..   +|+.|++|....+-
T Consensus       231 ~~aralf~F~~qt~k-------EL~~~kGDIVyI~rkvD~nWyeGEh---hGr~GifP~sYvE~  284 (489)
T KOG4225|consen  231 RAARALFDFEAQTPK-------ELPFNKGDIVYILRKVDQNWYEGEH---HGRVGIFPASYVEI  284 (489)
T ss_pred             chhhheeccccCCcc-------ccccCCCCEEEEEeeccCceeeeee---cceecceechheee
Confidence            348999999999875       5899999999999999999999987   68999999887654

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=97.48  E-value=0.00036  Score=72.27  Aligned_cols=90  Identities=9%  Similarity=-0.018  Sum_probs=64.5

Q ss_pred             EecCcCChHHHHHHHhc-CCCC--------ceeeecCCCchhhhhhh-----------------c------ccHHHHHHH
Q psy6613         151 ITRVTADISLAKRSLMS-NPSK--------RAIMERSNSRSSVLTEV-----------------Q------TEIERVYEL  198 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~--------F~~sVshTTR~pFe~~I-----------------~------TslesI~~v  198 (510)
                      +||+|+|||+|..+|.+ ....        +...+++||++|-.+++                 .      --.+.|.++
T Consensus        10 ~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a~~~i~~i   89 (307)
T PRK00091         10 VGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDALAAIADI   89 (307)
T ss_pred             ECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHHHHHHHHH
Confidence            99999999999999987 4332        56667899999922111                 1      346678889


Q ss_pred             HHcCCeEEEEeccCCchhHh-hhcCCCceEEEEeCCCHHHHHHHHHhcCC
Q psy6613         199 ASTLQLVVLDCDTINHPSQL-AKTNLSPCIVYLKISSPKVLQRLIKSRGK  247 (510)
Q Consensus       199 i~sGKi~ILDID~qg~~lq~-lks~l~PivIFIkPPS~e~L~~rLr~Rgt  247 (510)
                      +++|+++||+   -|  ..+ ++.-+..+  +..||+.+.++.+++.+..
T Consensus        90 ~~~gk~pIlv---GG--t~~Y~~al~~g~--~~~p~~~~~~r~~l~~~~~  132 (307)
T PRK00091         90 LARGKLPILV---GG--TGLYIKALLEGL--SPLPPADPELRAELEALAA  132 (307)
T ss_pred             HhCCCCEEEE---Cc--HHHHHHHhccCC--CCCCCCCHHHHHHHHHHHH
Confidence            9999999998   34  344 34433333  2679999999999887644

>PRK13975 thymidylate kinase; Provisional

Probab=97.45  E-value=0.0044  Score=58.33  Aligned_cols=140  Identities=11%  Similarity=0.081  Sum_probs=71.8

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCch--------------h------hhhhhcccHHHHHHHHHcCCeEEEEe
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRS--------------S------VLTEVQTEIERVYELASTLQLVVLDC  209 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~--------------p------Fe~~I~TslesI~~vi~sGKi~ILDI  209 (510)
                      .|+.|+||||+.+.|-+ ....+ ...+..+--              +      |...-......|...+.. .+||+|=
T Consensus         8 eG~~GsGKtT~~~~L~~~l~~~~-~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~~-~~vi~DR   85 (196)
T PRK13975          8 EGIDGSGKTTQAKLLAEKLNAFW-TCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLKK-RDVVCDR   85 (196)
T ss_pred             ECCCCCCHHHHHHHHHHHhCCCe-eECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CEEEEEC
Confidence            89999999999998887 33222 222221110              0      000000122334444444 6789982


Q ss_pred             ccC---------CchhHhhhc----CCCceEEEEeCCCHHHHHHHHHhcCCCc--HHHHHHHH-HHHHHHHh--cCCCCc
Q psy6613         210 DTI---------NHPSQLAKT----NLSPCIVYLKISSPKVLQRLIKSRGKSQ--TRHLNVQM-VAAEKLAQ--CPQEMF  271 (510)
Q Consensus       210 D~q---------g~~lq~lks----~l~PivIFIkPPS~e~L~~rLr~Rgt~~--~e~i~kRL-~aa~eLEq--~~~~~F  271 (510)
                      -+-         |...+.+..    .+.|-+||..-.+.+++.+|+..|+.+.  ..+...++ ..-.++..  .+...+
T Consensus        86 y~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~  165 (196)
T PRK13975         86 YVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKEIFEKKEFLKKVQEKYLELANNEKFMPKY  165 (196)
T ss_pred             chhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCccccchHHHHHHHHHHHHHHHhhcccCCcC
Confidence            111         111122111    2356556666668899999998887321  22333344 33333332  122344


Q ss_pred             cEEEeC---CCHHHHHHHHHHHHH
Q psy6613         272 DVILDE---NQLEDACEHIAEYLE  292 (510)
Q Consensus       272 D~VIvN---DdLd~A~~eL~~ile  292 (510)
                      .++++|   .+.++.++++.+.|.
T Consensus       166 ~~~~Id~~~~~~eev~~~I~~~i~  189 (196)
T PRK13975        166 GFIVIDTTNKSIEEVFNEILNKIK  189 (196)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHH
Confidence            455555   368888888885553

>PRK03839 putative kinase; Provisional

Probab=97.44  E-value=0.0032  Score=58.88  Aligned_cols=135  Identities=16%  Similarity=0.179  Sum_probs=65.4

Q ss_pred             eE-EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----hhhhhcccHHHHHHHH---HcCCeEEEEeccCCchhHh
Q psy6613         149 II-ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----VLTEVQTEIERVYELA---STLQLVVLDCDTINHPSQL  218 (510)
Q Consensus       149 pI-~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----Fe~~I~TslesI~~vi---~sGKi~ILDID~qg~~lq~  218 (510)
                      ++ +|++|+||||+.++|.+ ..-.|. .....-+..     |..........+...+   ..+..+|+|.....    .
T Consensus         3 I~l~G~pGsGKsT~~~~La~~~~~~~i-d~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vIidG~~~~----l   77 (180)
T PRK03839          3 IAITGTPGVGKTTVSKLLAEKLGYEYV-DLTEFALKKGIGEEKDDEMEIDFDKLAYFIEEEFKEKNVVLDGHLSH----L   77 (180)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcEE-ehhhhhhhcCCcccCChhhhcCHHHHHHHHHHhccCCCEEEEecccc----c
Confidence            44 99999999999999887 221121 110000100     1111111222232222   13667899875432    1


Q ss_pred             hhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHH---HHHHHHHHHHHHHhcCCCCccEEEeC--CCHHHHHHHHHHHHH
Q psy6613         219 AKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTR---HLNVQMVAAEKLAQCPQEMFDVILDE--NQLEDACEHIAEYLE  292 (510)
Q Consensus       219 lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e---~i~kRL~aa~eLEq~~~~~FD~VIvN--DdLd~A~~eL~~ile  292 (510)
                      .+   ..++||+. -+.+++.+|++.|+.....   ....++.....++......-.++|..  .++++.+.++..+|.
T Consensus        78 ~~---~~~vi~L~-~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~  152 (180)
T PRK03839         78 LP---VDYVIVLR-AHPKIIKERLKERGYSKKKILENVEAELVDVCLCEALEEKEKVIEVDTTGKTPEEVVEEILELIK  152 (180)
T ss_pred             cC---CCEEEEEE-CCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHh
Confidence            11   23456655 5678889999888754221   11122211100111101112245543  378999988885553

>PRK14532 adenylate kinase; Provisional

Probab=97.40  E-value=0.0018  Score=60.97  Aligned_cols=141  Identities=12%  Similarity=0.061  Sum_probs=76.2

Q ss_pred             eE-EecCcCChHHHHHHHhcCCCCceeeecCCCchhh----------hhhhc--------ccHHHHHHHH---HcCCeEE
Q psy6613         149 II-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSSV----------LTEVQ--------TEIERVYELA---STLQLVV  206 (510)
Q Consensus       149 pI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~pF----------e~~I~--------TslesI~~vi---~sGKi~I  206 (510)
                      ++ +||+|+||+|+.++|.+....-.++....-|...          ...+.        +..+.+.+.+   ..|.-+|
T Consensus         3 i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~v   82 (188)
T PRK14532          3 LILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGGAI   82 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCcEE
Confidence            44 9999999999999998733222333323333310          00010        1122222222   2467799


Q ss_pred             EEeccCCchhHh-------hhc-CCCc-eEEEEeCCCHHHHHHHHHhcCC------CcHHHHHHHH-HHHHH---HHhcC
Q psy6613         207 LDCDTINHPSQL-------AKT-NLSP-CIVYLKISSPKVLQRLIKSRGK------SQTRHLNVQM-VAAEK---LAQCP  267 (510)
Q Consensus       207 LDID~qg~~lq~-------lks-~l~P-ivIFIkPPS~e~L~~rLr~Rgt------~~~e~i~kRL-~aa~e---LEq~~  267 (510)
                      ||--|..  ...       ++. ...| ++||+..| .+++.+|+.+|..      ++.+...+|+ .--.+   +...|
T Consensus        83 ldg~pr~--~~q~~~~~~~l~~~g~~pd~vi~L~v~-~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y  159 (188)
T PRK14532         83 FDGFPRT--VAQAEALDKMLASRGQKIDVVIRLKVD-DEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYY  159 (188)
T ss_pred             EeCCCCC--HHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9976654  222       222 3556 56777776 6778888876642      2345566777 22222   22333


Q ss_pred             CCCccEEEe--CCCHHHHHHHHHHHHH
Q psy6613         268 QEMFDVILD--ENQLEDACEHIAEYLE  292 (510)
Q Consensus       268 ~~~FD~VIv--NDdLd~A~~eL~~ile  292 (510)
                      ...--++.+  +.++++.++++..+|+
T Consensus       160 ~~~~~~~~id~~~~~eev~~~I~~~l~  186 (188)
T PRK14532        160 AGQGKLTEVDGMGSIEAVAASIDAALE  186 (188)
T ss_pred             HhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence            221113333  4579999999886664

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=97.37  E-value=0.005  Score=56.49  Aligned_cols=138  Identities=14%  Similarity=0.159  Sum_probs=70.8

Q ss_pred             EEecCcCChHHHHHHHhc-CCCCceeeecCCCchh---h-------hhh----hcccHHHHHHHHHcCCeEEEEeccCCc
Q psy6613         150 IITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS---V-------LTE----VQTEIERVYELASTLQLVVLDCDTINH  214 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p---F-------e~~----I~TslesI~~vi~sGKi~ILDID~qg~  214 (510)
                      ++||+|+||||+.+.|.. ....+--......+..   +       ...    +..-.+.+...+..|+.+|+|+..-..
T Consensus         3 l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi~~t~~~~   82 (163)
T TIGR01313         3 LMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGIITCSALKR   82 (163)
T ss_pred             EECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEEEecccHH
Confidence            489999999999998887 3311211111111110   0       000    012234555677788888888865320


Q ss_pred             h-hHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhcCCCCccEEEeC--CCHHHHHHHHH
Q psy6613         215 P-SQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKS--QTRHLNVQMVAAEKLAQCPQEMFDVILDE--NQLEDACEHIA  288 (510)
Q Consensus       215 ~-lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~--~~e~i~kRL~aa~eLEq~~~~~FD~VIvN--DdLd~A~~eL~  288 (510)
                      . ...++. .....+||+.. +.+++.+|++.|+..  ..+.+..++.   +++.-.....++++++  ...++..+++.
T Consensus        83 ~~r~~~~~~~~~~~~i~l~~-~~e~~~~R~~~R~~~~~~~~~i~~~~~---~~~~~~~~e~~~~~id~~~~~~~~~~~~~  158 (163)
T TIGR01313        83 HYRDILREAEPNLHFIYLSG-DKDVILERMKARKGHFMKADMLESQFA---ALEEPLADETDVLRVDIDQPLEGVEEDCI  158 (163)
T ss_pred             HHHHHHHhcCCCEEEEEEeC-CHHHHHHHHHhccCCCCCHHHHHHHHH---HhCCCCCCCCceEEEECCCCHHHHHHHHH
Confidence            0 111222 22334567765 488999999988642  1223332222   2222111223555554  44567777766


Q ss_pred             HHH
Q psy6613         289 EYL  291 (510)
Q Consensus       289 ~il  291 (510)
                      ++|
T Consensus       159 ~~~  161 (163)
T TIGR01313       159 AVV  161 (163)
T ss_pred             HHH
Confidence            443

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK14530 adenylate kinase; Provisional

Probab=97.33  E-value=0.0026  Score=61.52  Aligned_cols=140  Identities=16%  Similarity=0.118  Sum_probs=74.1

Q ss_pred             CeE-EecCcCChHHHHHHHhc-CCCCceee-ec--------------CCC----chhhhh-h-hc--ccHHHHHHHHHcC
Q psy6613         148 MII-ITRVTADISLAKRSLMS-NPSKRAIM-ER--------------SNS----RSSVLT-E-VQ--TEIERVYELASTL  202 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~-~P~~F~~s-Vs--------------hTT----R~pFe~-~-I~--TslesI~~vi~sG  202 (510)
                      +++ +||+|+||||+.+.|.+ +.  +.+. ..              .+.    +.-+.. . +-  ....-+.+.+.+.
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~--~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~~~   82 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFG--VEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALSDA   82 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--CeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Confidence            555 99999999999999987 32  2111 10              000    000100 0 00  1223334445556


Q ss_pred             CeEEEEeccCCchhHhhh---cCC-CceEEEEeCCCHHHHHHHHHhc---------------------------------
Q psy6613         203 QLVVLDCDTINHPSQLAK---TNL-SPCIVYLKISSPKVLQRLIKSR---------------------------------  245 (510)
Q Consensus       203 Ki~ILDID~qg~~lq~lk---s~l-~PivIFIkPPS~e~L~~rLr~R---------------------------------  245 (510)
                      ..+|+|--+..  ....+   ... .-++||+..| .+++.+|+.+|                                 
T Consensus        83 ~~~IldG~pr~--~~q~~~l~~~~~~d~vI~Ld~~-~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~R  159 (215)
T PRK14530         83 DGFVLDGYPRN--LEQAEYLESITDLDVVLYLDVS-EEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQR  159 (215)
T ss_pred             CCEEEcCCCCC--HHHHHHHHHhcCCCEEEEEeCC-HHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcccCC
Confidence            66788865544  22222   112 2345556555 45555665444                                 


Q ss_pred             CCCcHHHHHHHH----HHHHHHHhcCCCCccEEEe--CCCHHHHHHHHHHHHH
Q psy6613         246 GKSQTRHLNVQM----VAAEKLAQCPQEMFDVILD--ENQLEDACEHIAEYLE  292 (510)
Q Consensus       246 gt~~~e~i~kRL----~aa~eLEq~~~~~FD~VIv--NDdLd~A~~eL~~ile  292 (510)
                      +.+..+.+.+||    +....+..+|.+..-++.+  +.++++.++++..+|+
T Consensus       160 ~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  212 (215)
T PRK14530        160 DDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAID  212 (215)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHh
Confidence            445667888998    2223455556443223333  4678999998886653

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=97.33  E-value=0.0061  Score=56.52  Aligned_cols=138  Identities=16%  Similarity=0.115  Sum_probs=69.3

Q ss_pred             EecCcCChHHHHHHHhc-C-CCCceeee---cCCCchh------hhh------------hh------cccHHHHHHHHHc
Q psy6613         151 ITRVTADISLAKRSLMS-N-PSKRAIME---RSNSRSS------VLT------------EV------QTEIERVYELAST  201 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~-P~~F~~sV---shTTR~p------Fe~------------~I------~TslesI~~vi~s  201 (510)
                      .|+.|+||||+.++|.+ . ...+...+   +.++...      +..            ..      ....+.+......
T Consensus         6 eG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~   85 (200)
T cd01672           6 EGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIKPALAR   85 (200)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            89999999999999886 3 22222221   1122101      110            00      0122334555678


Q ss_pred             CCeEEEEe------ccCCc-------hhHhhhc----CCCc-eEEEEeCCCHHHHHHHHHhcCCCcH-----HHHHHHH-
Q psy6613         202 LQLVVLDC------DTINH-------PSQLAKT----NLSP-CIVYLKISSPKVLQRLIKSRGKSQT-----RHLNVQM-  257 (510)
Q Consensus       202 GKi~ILDI------D~qg~-------~lq~lks----~l~P-ivIFIkPPS~e~L~~rLr~Rgt~~~-----e~i~kRL-  257 (510)
                      |+++|+|=      -.++.       -...+..    .+.| ++||+.. +.+++.+|+..|+....     .+..+++ 
T Consensus        86 ~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~-~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~  164 (200)
T cd01672          86 GKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDI-DPEVGLARIEARGRDDRDEQEGLEFHERVR  164 (200)
T ss_pred             CCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeC-CHHHHHHHHHhcCCcchhhhhhHHHHHHHH
Confidence            99999992      22210       0111111    2345 4555555 45888889888876432     2333444 


Q ss_pred             HHHHHHHhcCCCCccEEEeCC--CHHHHHHHHHHHH
Q psy6613         258 VAAEKLAQCPQEMFDVILDEN--QLEDACEHIAEYL  291 (510)
Q Consensus       258 ~aa~eLEq~~~~~FD~VIvND--dLd~A~~eL~~il  291 (510)
                      ..-.++...+  ..+.+++|.  ++++.++++.+.|
T Consensus       165 ~~y~~~~~~~--~~~~~~id~~~~~e~i~~~i~~~i  198 (200)
T cd01672         165 EGYLELAAQE--PERIIVIDASQPLEEVLAEILKAI  198 (200)
T ss_pred             HHHHHHHHhC--CCeEEEEeCCCCHHHHHHHHHHHH
Confidence            2223333322  234565553  3556666665433

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK14531 adenylate kinase; Provisional

Probab=97.33  E-value=0.0054  Score=58.01  Aligned_cols=142  Identities=14%  Similarity=0.093  Sum_probs=76.4

Q ss_pred             CCeE-EecCcCChHHHHHHHhcCCCCceeeecCCCch------h----hhhhhc--------ccHHHHHHHHH--cCCeE
Q psy6613         147 GMII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRS------S----VLTEVQ--------TEIERVYELAS--TLQLV  205 (510)
Q Consensus       147 ~RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~------p----Fe~~I~--------TslesI~~vi~--sGKi~  205 (510)
                      .|++ +||+|+||+|+.++|.+....-.++....-|.      +    ....+.        .-...+.+.+.  .++-+
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~g~   82 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSGGW   82 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCCcE
Confidence            3566 99999999999999987222112221111111      1    011011        11122332222  35668


Q ss_pred             EEEeccCCchhHhhhc--------CCCc-eEEEEeCCCHHHHHHHHHhcCC--CcHHHHHHHH----HHHHHHHhcCCCC
Q psy6613         206 VLDCDTINHPSQLAKT--------NLSP-CIVYLKISSPKVLQRLIKSRGK--SQTRHLNVQM----VAAEKLAQCPQEM  270 (510)
Q Consensus       206 ILDID~qg~~lq~lks--------~l~P-ivIFIkPPS~e~L~~rLr~Rgt--~~~e~i~kRL----~aa~eLEq~~~~~  270 (510)
                      |||--|..  ....+.        ...+ .+||+..| .+++.+|+.+|+.  ++.+.+.+|+    .....+.+.|...
T Consensus        83 ilDGfpr~--~~q~~~~~~~~~~~~~~~~~vi~l~~~-~~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~  159 (183)
T PRK14531         83 LLDGFPRT--VAQAEALEPLLEELKQPIEAVVLLELD-DAVLIERLLARGRADDNEAVIRNRLEVYREKTAPLIDHYRQR  159 (183)
T ss_pred             EEeCCCCC--HHHHHHHHHHHHHcCCCCCeEEEEECC-HHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99988766  333221        1233 36777774 7889999988765  3456677888    2223344444322


Q ss_pred             cc-EEEeC-CCHHHHHHHHHHHH
Q psy6613         271 FD-VILDE-NQLEDACEHIAEYL  291 (510)
Q Consensus       271 FD-~VIvN-DdLd~A~~eL~~il  291 (510)
                      -= ++|.+ .+.++.+.++..+|
T Consensus       160 ~~~~~id~~~~~~~v~~~i~~~l  182 (183)
T PRK14531        160 GLLQSVEAQGSIEAITERIEKVL  182 (183)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh
Confidence            11 33333 47888888887543

>KOG2996|consensus

Probab=97.33  E-value=0.00014  Score=79.78  Aligned_cols=54  Identities=20%  Similarity=0.377  Sum_probs=43.7

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEee--cCCCceEEEEccCCCceeeecChhHHH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK--YDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~--~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      +...|.|||.+.+-       .+|||+.|||+.|.++  .|.+||.|..   +|++||+|+..-.|
T Consensus       806 g~AvarYdf~ard~-------~eLSlk~GDvV~i~~k~g~d~GWWkGev---ngrvGwFPstYVee  861 (865)
T KOG2996|consen  806 GTAVARYDFCARDM-------RELSLKEGDVVKIYDKVGEDQGWWKGEV---NGRVGWFPSTYVEE  861 (865)
T ss_pred             eeeeeccccCCCch-------hhcccccCCEEEEehhccccCceeccee---cCcccccccccccc
Confidence            34557788877654       3699999999999997  5789999998   68999999987544

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=97.29  E-value=0.008  Score=54.92  Aligned_cols=129  Identities=15%  Similarity=0.154  Sum_probs=70.0

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCC---Cchh----------hhhhh------cc-cHHHHHHHHHcCCeEEEEec
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSN---SRSS----------VLTEV------QT-EIERVYELASTLQLVVLDCD  210 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshT---TR~p----------Fe~~I------~T-slesI~~vi~sGKi~ILDID  210 (510)
                      .|++|+||||+.+.|.+.. .|.  +-++   -+..          |....      .. -.+.+.+.+..+..||+|.-
T Consensus         6 ~G~~GSGKstia~~la~~l-g~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Vi~g~   82 (171)
T TIGR02173         6 SGPPGSGKTTVAKILAEKL-SLK--LISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKNVVLESR   82 (171)
T ss_pred             ECCCCCCHHHHHHHHHHHc-CCc--eecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCEEEEec
Confidence            8999999999999997621 111  1111   0100          11110      01 11224445546778888865


Q ss_pred             cCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHH-----HHhc------CCCCccEEEeCCC
Q psy6613         211 TINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEK-----LAQC------PQEMFDVILDENQ  279 (510)
Q Consensus       211 ~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~e-----LEq~------~~~~FD~VIvNDd  279 (510)
                      ..+  . .++ ...-++|||.+| .+...+|+..|+..+.+...+++...++     ....      ....||++|..+.
T Consensus        83 ~~~--~-~~~-~~~d~~v~v~a~-~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~ydl~i~t~~  157 (171)
T TIGR02173        83 LAG--W-IVR-EYADVKIWLKAP-LEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDDLSIYDLVINTSN  157 (171)
T ss_pred             ccc--e-eec-CCcCEEEEEECC-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEEEECCC
Confidence            433  1 122 222378999986 6767777777766666666666522211     1111      2367998887665


Q ss_pred             --HHHHHHHHH
Q psy6613         280 --LEDACEHIA  288 (510)
Q Consensus       280 --Ld~A~~eL~  288 (510)
                        .|+ ++.+.
T Consensus       158 ~~~~~-~~~i~  167 (171)
T TIGR02173       158 WDPNN-VDIIL  167 (171)
T ss_pred             CCHHH-HHHHH
Confidence              455 54444

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>KOG4348|consensus

Probab=97.26  E-value=8.3e-05  Score=79.27  Aligned_cols=58  Identities=21%  Similarity=0.496  Sum_probs=48.6

Q ss_pred             CCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          44 KNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        44 k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ++..-.+.+.|.|.++.|+       +|.|+.||||+|+..-.++||.|..   +|..|+|||+---|
T Consensus        97 q~~~r~c~v~f~Y~pqndD-------ELelkVGDiIeli~eVEeGWw~G~L---ngk~GmFPsNFVke  154 (627)
T KOG4348|consen   97 QPQARICVVTFAYSPQNDD-------ELELKVGDIIELISEVEEGWWKGKL---NGKVGMFPSNFVKE  154 (627)
T ss_pred             CccceeEEEEEeecCCCCc-------eeeeeeccHHHhhhHhhhhhhhcee---cCcccccchhhcee
Confidence            3334445689999999987       5999999999999998899999998   57999999986544

>KOG0515|consensus

Probab=97.26  E-value=0.00014  Score=79.13  Aligned_cols=51  Identities=29%  Similarity=0.581  Sum_probs=42.9

Q ss_pred             EEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCC---CceEEEEccCCCceeeecChhHH
Q psy6613          50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDS---NWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        50 VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~---~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      |=|+|||+++.++       +|+|+.||-|.|+..+|+   +||-|++   +++.|++|...+.
T Consensus       686 vYAlwdYeaqf~D-------ELsf~eGd~lTvirr~d~~eteWWwa~l---ng~eGyVPRnylg  739 (752)
T KOG0515|consen  686 VYALWDYEAQFED-------ELSFDEGDELTVIRRDDEVETEWWWARL---NGEEGYVPRNYLG  739 (752)
T ss_pred             eEEeecccccccc-------cccccCCceeEEEecCCcchhhhhhHhh---cCcccccchhhhh
Confidence            6699999999887       599999999999998665   8999996   5678888877653

>TIGR01351 adk adenylate kinases

Probab=97.25  E-value=0.0042  Score=59.89  Aligned_cols=141  Identities=11%  Similarity=0.077  Sum_probs=78.1

Q ss_pred             CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCch------hh----hhhhc--------ccHHHHHHHHHc----CCe
Q psy6613         148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRS------SV----LTEVQ--------TEIERVYELAST----LQL  204 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~------pF----e~~I~--------TslesI~~vi~s----GKi  204 (510)
                      |++ +||+|+||+|+.++|.+...-..++...--|.      +.    .+.+.        .-.+-+.+.+.+    ++.
T Consensus         1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~   80 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENG   80 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCc
Confidence            355 99999999999999886222222222111121      10    01111        112334444443    678


Q ss_pred             EEEEeccCCchhHhhhc---CC--Cc-eEEEEeCCCHHHHHHHHHhcC--------------------------------
Q psy6613         205 VVLDCDTINHPSQLAKT---NL--SP-CIVYLKISSPKVLQRLIKSRG--------------------------------  246 (510)
Q Consensus       205 ~ILDID~qg~~lq~lks---~l--~P-ivIFIkPPS~e~L~~rLr~Rg--------------------------------  246 (510)
                      .|||--|..  ....+.   .+  .| ++||+..|. +++.+|+.+|.                                
T Consensus        81 ~ilDGfPrt--~~Qa~~l~~~~~~~~~~vi~L~~~~-~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R  157 (210)
T TIGR01351        81 FILDGFPRT--LSQAEALDALLKEKIDAVIELDVPD-EELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQR  157 (210)
T ss_pred             EEEeCCCCC--HHHHHHHHHHhccCCCEEEEEECCH-HHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccC
Confidence            999987776  333322   22  23 567777765 77777776663                                


Q ss_pred             -CCcHHHHHHHH----HHHHHHHhcCCCCccEEEe--CCCHHHHHHHHHHHH
Q psy6613         247 -KSQTRHLNVQM----VAAEKLAQCPQEMFDVILD--ENQLEDACEHIAEYL  291 (510)
Q Consensus       247 -t~~~e~i~kRL----~aa~eLEq~~~~~FD~VIv--NDdLd~A~~eL~~il  291 (510)
                       .++.+.+.+||    +....+...|....-++.+  +.+.++.+++|..+|
T Consensus       158 ~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  209 (210)
T TIGR01351       158 EDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL  209 (210)
T ss_pred             CCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence             23457788888    2334455555443223333  467888888887544

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.25  E-value=0.0085  Score=55.79  Aligned_cols=137  Identities=7%  Similarity=0.090  Sum_probs=69.8

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchh----------hhhhhc----cc----HHHHHHHHHc--CCeEEEEec
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS----------VLTEVQ----TE----IERVYELAST--LQLVVLDCD  210 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p----------Fe~~I~----Ts----lesI~~vi~s--GKi~ILDID  210 (510)
                      +||+|+||||+.++|.+...--.++....-|..          .+..+.    .+    .+-+.+.+.+  ++.+|||--
T Consensus         5 ~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~vlDg~   84 (183)
T TIGR01359         5 LGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKKFLIDGF   84 (183)
T ss_pred             ECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCcEEEeCC
Confidence            899999999999999873222222222222322          011111    11    2223333332  678999998


Q ss_pred             cCCchhHhhh-------cCCCc-eEEEEeCCCHHHHHHHHHhcCC------CcHHHHHHHHHHH----HHHHhcCCCCcc
Q psy6613         211 TINHPSQLAK-------TNLSP-CIVYLKISSPKVLQRLIKSRGK------SQTRHLNVQMVAA----EKLAQCPQEMFD  272 (510)
Q Consensus       211 ~qg~~lq~lk-------s~l~P-ivIFIkPPS~e~L~~rLr~Rgt------~~~e~i~kRL~aa----~eLEq~~~~~FD  272 (510)
                      |..  ....+       ....| ++||+..| .+++.+|+..|+.      ++.+.+.+|+..-    ..+...|...--
T Consensus        85 p~~--~~q~~~~~~~~~~~~~~d~~i~l~~~-~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~~  161 (183)
T TIGR01359        85 PRN--EENLEAWEKLMDNKVNFKFVLFFDCP-EEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGK  161 (183)
T ss_pred             CCC--HHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            765  22221       12334 56666665 4777788877754      2345566666211    122222221112


Q ss_pred             EEEeC--CCHHHHHHHHHHH
Q psy6613         273 VILDE--NQLEDACEHIAEY  290 (510)
Q Consensus       273 ~VIvN--DdLd~A~~eL~~i  290 (510)
                      ++.+|  .+.++.++++.++
T Consensus       162 ~~~Id~~~~~~~v~~~i~~~  181 (183)
T TIGR01359       162 VKEINAEGSVEEVFEDVEKI  181 (183)
T ss_pred             EEEEECCCCHHHHHHHHHHH
Confidence            33333  4577777776644

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=97.20  E-value=0.0054  Score=61.75  Aligned_cols=94  Identities=16%  Similarity=0.150  Sum_probs=57.1

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-h--------------hhhhc-ccHHHHHHHHHcCCeEEEEeccCC
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-V--------------LTEVQ-TEIERVYELASTLQLVVLDCDTIN  213 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-F--------------e~~I~-TslesI~~vi~sGKi~ILDID~qg  213 (510)
                      +||+|+||||+.+.|.+ ++..+.++. ..-|.. +              +..+. .-.+.+.+.+..|..||+|..+..
T Consensus         8 ~G~pGSGKSTla~~L~~~~~~~~~l~~-D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vIid~~~~~   86 (300)
T PHA02530          8 VGVPGSGKSTWAREFAAKNPKAVNVNR-DDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVIISDTNLN   86 (300)
T ss_pred             EcCCCCCHHHHHHHHHHHCCCCEEEec-cHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCCC
Confidence            89999999999999988 543222221 111111 0              00011 223445667788999999987654


Q ss_pred             chhHh------hhc-CCCceEEEEeCCCHHHHHHHHHhcCC
Q psy6613         214 HPSQL------AKT-NLSPCIVYLKISSPKVLQRLIKSRGK  247 (510)
Q Consensus       214 ~~lq~------lks-~l~PivIFIkPPS~e~L~~rLr~Rgt  247 (510)
                       +.+.      .+. .....+||+.+ +.+++.+|+..|+.
T Consensus        87 -~~~~~~~~~la~~~~~~~~~v~l~~-~~e~~~~R~~~R~~  125 (300)
T PHA02530         87 -PERRRKWKELAKELGAEFEEKVFDV-PVEELVKRNRKRGE  125 (300)
T ss_pred             -HHHHHHHHHHHHHcCCeEEEEEeCC-CHHHHHHHHHccCc
Confidence             1211      111 23445677776 79999999999964

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=97.17  E-value=0.003  Score=63.57  Aligned_cols=85  Identities=14%  Similarity=0.180  Sum_probs=56.3

Q ss_pred             CeEEEEeccCCchhHh-hhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCC--
Q psy6613         203 QLVVLDCDTINHPSQL-AKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVILDEN--  278 (510)
Q Consensus       203 Ki~ILDID~qg~~lq~-lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvND--  278 (510)
                      ..||+|+..-   .+. +...+.-.+|||.+ +.++..+|+..|+..+.+++.+|+ .+....+.  ....|+||.|+  
T Consensus       118 ~~vv~evPLL---~E~~~~~~~~D~iv~V~a-~~e~ri~RL~~R~g~s~eea~~Ri~~Q~~~~ek--~~~aD~VI~N~~~  191 (244)
T PTZ00451        118 LIVVLDAPTL---FETKTFTYFVSASVVVSC-SEERQIERLRKRNGFSKEEALQRIGSQMPLEEK--RRLADYIIENDSA  191 (244)
T ss_pred             CEEEEEechh---hccCchhhcCCeEEEEEC-CHHHHHHHHHHcCCCCHHHHHHHHHhCCCHHHH--HHhCCEEEECCCC
Confidence            4899999652   111 01123456788855 466666777777666778888888 32222222  36789999999  


Q ss_pred             -CHHHHHHHHHHHHHH
Q psy6613         279 -QLEDACEHIAEYLEA  293 (510)
Q Consensus       279 -dLd~A~~eL~~ilea  293 (510)
                       |+++...++..++..
T Consensus       192 g~~~~L~~~v~~~~~~  207 (244)
T PTZ00451        192 DDLDELRGSVCDCVAW  207 (244)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence             899999988866643

>PRK08233 hypothetical protein; Provisional

Probab=97.16  E-value=0.0053  Score=56.70  Aligned_cols=140  Identities=12%  Similarity=0.124  Sum_probs=66.0

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecC---CCch----h-------hhh-hhcccHHHHHHHHHcC--CeEEEEeccC
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERS---NSRS----S-------VLT-EVQTEIERVYELASTL--QLVVLDCDTI  212 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVsh---TTR~----p-------Fe~-~I~TslesI~~vi~sG--Ki~ILDID~q  212 (510)
                      .|++|+||||+.+.|.. .+..-.+....   .+.+    .       ++. .+..-.+.+....+.+  ..+|+|...-
T Consensus         9 ~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vivd~~~~   88 (182)
T PRK08233          9 AAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKSNVDYIIVDYPFA   88 (182)
T ss_pred             ECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCCCceEEEEeeehh
Confidence            79999999999999987 44221111110   0000    0       100 0001223444444444  4455554321


Q ss_pred             CchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCC-CcHHHHHHHH----HHHHH----HHhcCCCCccEEEeCC-CHHH
Q psy6613         213 NHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGK-SQTRHLNVQM----VAAEK----LAQCPQEMFDVILDEN-QLED  282 (510)
Q Consensus       213 g~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt-~~~e~i~kRL----~aa~e----LEq~~~~~FD~VIvND-dLd~  282 (510)
                      . -...+. ...-++|||..|.-..++++++.... .+.+.+.+++    .....    +.+.+...-+++|.++ ++++
T Consensus        89 ~-~~~~~~-~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~  166 (182)
T PRK08233         89 Y-LNSEMR-QFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGALSVEE  166 (182)
T ss_pred             h-ccHHHH-HHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHH
Confidence            1 011111 33458899998765556555533211 1112222222    11111    1122223457777554 6888


Q ss_pred             HHHHHHHHHH
Q psy6613         283 ACEHIAEYLE  292 (510)
Q Consensus       283 A~~eL~~ile  292 (510)
                      .++++..++.
T Consensus       167 i~~~i~~~l~  176 (182)
T PRK08233        167 IINQIEEELY  176 (182)
T ss_pred             HHHHHHHHHH
Confidence            8888886554

>PRK00279 adk adenylate kinase; Reviewed

Probab=97.15  E-value=0.0077  Score=58.32  Aligned_cols=142  Identities=10%  Similarity=0.055  Sum_probs=79.8

Q ss_pred             CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh----------hhhhhc--------ccHHHHHHHHHc---CCeE
Q psy6613         148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS----------VLTEVQ--------TEIERVYELAST---LQLV  205 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p----------Fe~~I~--------TslesI~~vi~s---GKi~  205 (510)
                      |++ +||+|+||+|+.++|.+....-.+++..--|.-          ....+.        ...+.|.+.+.+   +..+
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g~   81 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNGF   81 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCCE
Confidence            455 999999999999988873222222222222221          000011        223344444433   3478


Q ss_pred             EEEeccCCchhHh---hh----c-CCCc-eEEEEeCCCHHHHHHHHHhcC------------------------------
Q psy6613         206 VLDCDTINHPSQL---AK----T-NLSP-CIVYLKISSPKVLQRLIKSRG------------------------------  246 (510)
Q Consensus       206 ILDID~qg~~lq~---lk----s-~l~P-ivIFIkPPS~e~L~~rLr~Rg------------------------------  246 (510)
                      |||--|..  ...   +.    . ...+ ++||+..| .+++.+|+..|.                              
T Consensus        82 VlDGfPr~--~~qa~~l~~~l~~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~  158 (215)
T PRK00279         82 LLDGFPRT--IPQAEALDEMLKELGIKLDAVIEIDVP-DEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELI  158 (215)
T ss_pred             EEecCCCC--HHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCccc
Confidence            99987765  322   21    1 2344 67777777 466777776663                              


Q ss_pred             ---CCcHHHHHHHH----HHHHHHHhcCCCCccEEEe--CCCHHHHHHHHHHHHH
Q psy6613         247 ---KSQTRHLNVQM----VAAEKLAQCPQEMFDVILD--ENQLEDACEHIAEYLE  292 (510)
Q Consensus       247 ---t~~~e~i~kRL----~aa~eLEq~~~~~FD~VIv--NDdLd~A~~eL~~ile  292 (510)
                         .++.+.+.+||    .....+...|.+..=++-+  +.+.++.++++..+|.
T Consensus       159 ~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  213 (215)
T PRK00279        159 QRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALG  213 (215)
T ss_pred             CCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence               24467788888    2234455666443223434  4668888888886654

>KOG3655|consensus

Probab=97.14  E-value=0.00016  Score=77.91  Aligned_cols=53  Identities=25%  Similarity=0.554  Sum_probs=46.5

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChh
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPV  108 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~  108 (510)
                      .-..||+|||++.+|.       +|+|..+|+|..++.-|.+||+|+.  .+|..||||.++
T Consensus       427 ~q~A~A~~dyqAAddt-------Eisf~p~d~it~Id~vdegww~g~~--pdG~~glfPaNy  479 (484)
T KOG3655|consen  427 PQTARALYDYQAADDT-------EISFDPPDAITLIDQVDEGWWTGQG--PDGEVGLFPANY  479 (484)
T ss_pred             CCCccccccccccCCc-------ccccCCccccccccccCCccccccC--CCCCcCcccccc
Confidence            3357899999999986       5889999999999999999999987  467999999864

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.14  E-value=0.0032  Score=62.29  Aligned_cols=140  Identities=17%  Similarity=0.113  Sum_probs=75.3

Q ss_pred             EecCcCChHHHHHHHhc-CCC-Cceee-ec-CCCchhh-------hhhhc-ccHHHHHHHHHcCCeEEEEeccCCc-h-h
Q psy6613         151 ITRVTADISLAKRSLMS-NPS-KRAIM-ER-SNSRSSV-------LTEVQ-TEIERVYELASTLQLVVLDCDTINH-P-S  216 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~-~F~~s-Vs-hTTR~pF-------e~~I~-TslesI~~vi~sGKi~ILDID~qg~-~-l  216 (510)
                      +|++|+||||+.+.|.+ ... .+... ++ ..-|..|       +..+. .....|...++.|..||+|-..-.. . .
T Consensus         5 ~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D~~~~~~~~r~   84 (249)
T TIGR03574         5 TGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWKEKYEEFIRDSTLYLIKTALKNKYSVIVDDTNYYNSMRR   84 (249)
T ss_pred             EcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhhHHhHHHHHHHHHHHHHHHHhCCCeEEEeccchHHHHHH
Confidence            99999999999998876 221 12111 11 1112212       11111 3345688888999999999743110 0 0


Q ss_pred             Hh---hhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHhcC-CCCccEEEeCC---CHHHHHHHH
Q psy6613         217 QL---AKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEK-LAQCP-QEMFDVILDEN---QLEDACEHI  287 (510)
Q Consensus       217 q~---lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~e-LEq~~-~~~FD~VIvND---dLd~A~~eL  287 (510)
                      ++   .+. ...-++||+.+ +.+++.+|...|+....++...+|....+ -...| ....+++|..+   ++++.+++|
T Consensus        85 ~l~~~ak~~~~~~~~I~l~~-p~e~~~~Rn~~R~~~~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd~~~~~~~~ei~~~i  163 (249)
T TIGR03574        85 DLINIAKEYNKNYIIIYLKA-PLDTLLRRNIERGEKIPNEVIKDMYEKFDEPGTKYSWDLPDLTIDTTKKIDYNEILEEI  163 (249)
T ss_pred             HHHHHHHhCCCCEEEEEecC-CHHHHHHHHHhCCCCCCHHHHHHHHHhhCCCCCCCCccCceEEecCCCCCCHHHHHHHH
Confidence            11   122 22334567765 46888888888876544455555521111 11122 23466777543   456777777


Q ss_pred             HHHH
Q psy6613         288 AEYL  291 (510)
Q Consensus       288 ~~il  291 (510)
                      .+++
T Consensus       164 ~~~~  167 (249)
T TIGR03574       164 LEIS  167 (249)
T ss_pred             HHHh
Confidence            6444

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK13808 adenylate kinase; Provisional

Probab=97.13  E-value=0.0094  Score=62.66  Aligned_cols=153  Identities=16%  Similarity=0.145  Sum_probs=83.0

Q ss_pred             CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCch------h----hhhhhc----ccHHHHH----HHHH---cCCeE
Q psy6613         148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRS------S----VLTEVQ----TEIERVY----ELAS---TLQLV  205 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~------p----Fe~~I~----TslesI~----~vi~---sGKi~  205 (510)
                      |+| +||+|+||+|+..+|.+..+...+++-.--|.      +    +...+.    .+-+.|.    +.+.   ...-.
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G~   81 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANGF   81 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCCE
Confidence            455 99999999999999987222222222110011      1    011111    1222222    2221   13457


Q ss_pred             EEEeccCCchhHhhhc--------CCCc-eEEEEeCCCHHHHHHHHHhc-------C-----CCcHHHHHHHHHH-H---
Q psy6613         206 VLDCDTINHPSQLAKT--------NLSP-CIVYLKISSPKVLQRLIKSR-------G-----KSQTRHLNVQMVA-A---  260 (510)
Q Consensus       206 ILDID~qg~~lq~lks--------~l~P-ivIFIkPPS~e~L~~rLr~R-------g-----t~~~e~i~kRL~a-a---  260 (510)
                      |||--|..  ..+...        .+.| ++||+.. +.+++.+|+..|       |     .++.+.+.+||.. .   
T Consensus        82 ILDGFPRt--~~QA~~L~~ll~~~gi~PDlVI~LDV-p~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t  158 (333)
T PRK13808         82 ILDGFPRT--VPQAEALDALLKDKQLKLDAVVELRV-NEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQT  158 (333)
T ss_pred             EEeCCCCC--HHHHHHHHHHHHhcCCCcCeEEEEEC-CHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHh
Confidence            99988766  433331        2455 4555555 557777777665       2     2345667777721 1   


Q ss_pred             HHHHhcCCCCccEEEeC--CCHHHHHHHHHHHHHHHHHhcCCCCC
Q psy6613         261 EKLAQCPQEMFDVILDE--NQLEDACEHIAEYLEAYWRATHPPAA  303 (510)
Q Consensus       261 ~eLEq~~~~~FD~VIvN--DdLd~A~~eL~~ileai~~a~h~p~~  303 (510)
                      ..|...|...--++.+|  .++|+.+++|..+|+.++.+.....-
T Consensus       159 ~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~~~~~~~~  203 (333)
T PRK13808        159 EPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGAANAKKAA  203 (333)
T ss_pred             HHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhCCCccccc
Confidence            12334443321234444  46899999999999998877755543

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.13  E-value=0.012  Score=56.44  Aligned_cols=72  Identities=14%  Similarity=0.163  Sum_probs=44.1

Q ss_pred             CCceEEEEeCCCHHHHHHHHHhc----CCCcHHHHHHHH-HHHHH----HHhcCCCCccEEEeCCC-HHHHHHHHHHHHH
Q psy6613         223 LSPCIVYLKISSPKVLQRLIKSR----GKSQTRHLNVQM-VAAEK----LAQCPQEMFDVILDENQ-LEDACEHIAEYLE  292 (510)
Q Consensus       223 l~PivIFIkPPS~e~L~~rLr~R----gt~~~e~i~kRL-~aa~e----LEq~~~~~FD~VIvNDd-Ld~A~~eL~~ile  292 (510)
                      +.-++|||.+|.-..+++++...    |. +.++...++ .....    ....+....|+||.|+. -+.+++.|.+.|+
T Consensus       125 ~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~-~~e~~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~~~~~~~~~~l~~~i~  203 (209)
T PRK05480        125 LMDIKIFVDTPLDIRLIRRLKRDVNERGR-SLESVINQYLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKAKIR  203 (209)
T ss_pred             hhceeEEEeCChhHHHHHHHhhcchhcCC-CHHHHHHHHHHhhhhhHHhhccHhhcceeEEecCCCcchHHHHHHHHHHH
Confidence            44578999999887777766543    44 344455565 33222    11223467899998774 4556666666665


Q ss_pred             HHH
Q psy6613         293 AYW  295 (510)
Q Consensus       293 ai~  295 (510)
                      .+|
T Consensus       204 ~~~  206 (209)
T PRK05480        204 QLL  206 (209)
T ss_pred             HHh
Confidence            655

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.10  E-value=0.005  Score=59.38  Aligned_cols=131  Identities=12%  Similarity=0.101  Sum_probs=77.0

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchh------h--hh---hhcccHHHHHHHHH---cCCeEEEEeccCCchh
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS------V--LT---EVQTEIERVYELAS---TLQLVVLDCDTINHPS  216 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p------F--e~---~I~TslesI~~vi~---sGKi~ILDID~qg~~l  216 (510)
                      .|.+|+||||++++|-.    +++-+-|-..--      +  .+   .+-...+.++..+.   ....+|+|.+..+   
T Consensus         6 TGTPGvGKTT~~~~L~~----lg~~~i~l~el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~~~~~~Ivd~H~~h---   78 (180)
T COG1936           6 TGTPGVGKTTVCKLLRE----LGYKVIELNELAKENGLYTEYDELRKSVIVDVDKLRKRLEELLREGSGIVDSHLSH---   78 (180)
T ss_pred             eCCCCCchHHHHHHHHH----hCCceeeHHHHHHhcCCeeccCCccceEEeeHHHHHHHHHHHhccCCeEeechhhh---
Confidence            89999999999998874    221122211110      0  01   01144555555555   5678899988754   


Q ss_pred             HhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH--HHHHHH--Hh--cCCCCccEEEeCCCHHHHHHHHHHH
Q psy6613         217 QLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM--VAAEKL--AQ--CPQEMFDVILDENQLEDACEHIAEY  290 (510)
Q Consensus       217 q~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL--~aa~eL--Eq--~~~~~FD~VIvNDdLd~A~~eL~~i  290 (510)
                       ++.   .+=+|||.--.+++|.+||+.||-+.. .+...+  +...-+  |+  .+...+-+=+.|.+.+++.+++..+
T Consensus        79 -l~~---~~dlVvVLR~~p~~L~~RLk~RGy~~e-KI~ENveAEi~~vi~~EA~E~~~~v~evdtt~~s~ee~~~~i~~i  153 (180)
T COG1936          79 -LLP---DCDLVVVLRADPEVLYERLKGRGYSEE-KILENVEAEILDVILIEAVERFEAVIEVDTTNRSPEEVAEEIIDI  153 (180)
T ss_pred             -cCC---CCCEEEEEcCCHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHH
Confidence             222   245677877888999999999996643 333333  111111  11  1233333344688899999999866


Q ss_pred             HHH
Q psy6613         291 LEA  293 (510)
Q Consensus       291 lea  293 (510)
                      ++.
T Consensus       154 i~~  156 (180)
T COG1936         154 IGG  156 (180)
T ss_pred             Hcc
Confidence            653

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.09  E-value=0.0015  Score=57.97  Aligned_cols=93  Identities=14%  Similarity=0.140  Sum_probs=55.0

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecC-CCchh--------------hhhhhc-ccHHHHHHHHHcCCeEEEEeccCC
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERS-NSRSS--------------VLTEVQ-TEIERVYELASTLQLVVLDCDTIN  213 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVsh-TTR~p--------------Fe~~I~-TslesI~~vi~sGKi~ILDID~qg  213 (510)
                      +||+|+||||+.+.|.+ ..  + ..++. +.+..              ...... .-.+.+...+..|..+|+|-..-.
T Consensus         5 ~G~pgsGKSt~a~~l~~~~~--~-~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~~~~~   81 (143)
T PF13671_consen    5 CGPPGSGKSTLAKRLAKRLG--A-VVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVVDNTNLS   81 (143)
T ss_dssp             EESTTSSHHHHHHHHHHHST--E-EEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEESS--S
T ss_pred             ECCCCCCHHHHHHHHHHHCC--C-EEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCceeccCcCC
Confidence            99999999999999997 43  2 22221 11111              000001 233667778899999999854433


Q ss_pred             chhH------hhhc-CCCceEEEEeCCCHHHHHHHHHhcCCC
Q psy6613         214 HPSQ------LAKT-NLSPCIVYLKISSPKVLQRLIKSRGKS  248 (510)
Q Consensus       214 ~~lq------~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~  248 (510)
                       ...      .++. .....+|++.+ +.+++.+|+..|+..
T Consensus        82 -~~~r~~~~~~~~~~~~~~~~v~l~~-~~~~~~~R~~~R~~~  121 (143)
T PF13671_consen   82 -REERARLRELARKHGYPVRVVYLDA-PEETLRERLAQRNRE  121 (143)
T ss_dssp             -HHHHHHHHHHHHHCTEEEEEEEECH-HHHHHHHHHHTTHCC
T ss_pred             -HHHHHHHHHHHHHcCCeEEEEEEEC-CHHHHHHHHHhcCCc
Confidence             111      1112 23456677766 568899999888665

...

>TIGR00152 dephospho-CoA kinase

Probab=97.08  E-value=0.0043  Score=58.75  Aligned_cols=82  Identities=17%  Similarity=0.291  Sum_probs=51.2

Q ss_pred             HcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEEEeC
Q psy6613         200 STLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVILDE  277 (510)
Q Consensus       200 ~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvN  277 (510)
                      ..|..||+++..--   . ... .+.-.+|||..| .++..+|+..|+..+.+.+.+|+ .+....+.  ....|+||.|
T Consensus       103 ~~~~~vvi~~pll~---e-~~~~~~~D~vv~V~~~-~~~~~~Rl~~R~~~s~~~~~~r~~~q~~~~~~--~~~ad~vI~N  175 (188)
T TIGR00152       103 SKLAYVLLDVPLLF---E-NKLRSLCDRVIVVDVS-PQLQLERLMQRDNLTEEEVQKRLASQMDIEER--LARADDVIDN  175 (188)
T ss_pred             cCCCEEEEEchHhh---h-CCcHHhCCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhcCCHHHH--HHhCCEEEEC
Confidence            34668888875421   1 111 234567787775 77777888888766778888888 33222222  2568999999


Q ss_pred             C-CHHHHHHHHH
Q psy6613         278 N-QLEDACEHIA  288 (510)
Q Consensus       278 D-dLd~A~~eL~  288 (510)
                      + ++++...++.
T Consensus       176 ~~~~e~l~~~~~  187 (188)
T TIGR00152       176 SATLADLVKQLE  187 (188)
T ss_pred             CCCHHHHHHHHh
Confidence            7 4666655553

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>KOG4226|consensus

Probab=97.04  E-value=0.00038  Score=70.76  Aligned_cols=51  Identities=24%  Similarity=0.512  Sum_probs=45.2

Q ss_pred             eeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHHHH
Q psy6613          53 NVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENL  113 (510)
Q Consensus        53 lfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~Err  113 (510)
                      -|.|.+...+       +|++.+|+.+.|+++..++||.|..   +|++|+|||+...|..
T Consensus       113 Kf~Y~a~~eD-------ELsLtKGtrv~vmEKssDGWWrG~~---ng~VGWFPSNYv~E~~  163 (379)
T KOG4226|consen  113 KFNYVAERED-------ELSLTKGTRVTVMEKSSDGWWRGSY---NGQVGWFPSNYVTEEV  163 (379)
T ss_pred             EEeecccccc-------ccccccCcEEEEEEeccCcceeccc---CCeeccccccceehhc
Confidence            5888887765       6999999999999999999999987   6899999999988855

>KOG4225|consensus

Probab=97.01  E-value=0.00051  Score=73.46  Aligned_cols=58  Identities=17%  Similarity=0.401  Sum_probs=47.3

Q ss_pred             cCCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChh
Q psy6613          43 AKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPV  108 (510)
Q Consensus        43 ~k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~  108 (510)
                      .....+-+||||.|.|+.++       +|.|..||||.|+++=|++|..|.-.. .|..|.||-..
T Consensus       428 t~~~~l~yrAly~Y~pqned-------eLEl~egDii~VmeKcddgWfvGts~r-tg~fGtFPgny  485 (489)
T KOG4225|consen  428 TSSEPLKYRALYSYRPQNED-------ELELREGDIIDVMEKCDDGWFVGTSRR-TGKFGTFPGNY  485 (489)
T ss_pred             CCCCcccceeccccCCCCch-------hheeccCCEEeeeecccCcceecccee-cccccccCccc
Confidence            33456669999999999877       499999999999999999999993221 46899999754

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=97.01  E-value=0.01  Score=57.48  Aligned_cols=85  Identities=9%  Similarity=0.121  Sum_probs=50.3

Q ss_pred             CeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCC-C
Q psy6613         203 QLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVILDEN-Q  279 (510)
Q Consensus       203 Ki~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvND-d  279 (510)
                      ..|++++..--    -... .+.-.+|||.+|.-. ..+|+..|+.-+.++...|+ .+...-+..  ..-|+||.|+ +
T Consensus       108 ~~vv~e~plL~----e~g~~~~~D~vi~V~a~~e~-ri~Rl~~R~g~s~e~~~~ri~~Q~~~~~k~--~~ad~vI~N~g~  180 (200)
T PRK14734        108 KVAVYDMPLLV----EKGLDRKMDLVVVVDVDVEE-RVRRLVEKRGLDEDDARRRIAAQIPDDVRL--KAADIVVDNNGT  180 (200)
T ss_pred             CEEEEEeecee----EcCccccCCeEEEEECCHHH-HHHHHHHcCCCCHHHHHHHHHhcCCHHHHH--HhCCEEEECcCC
Confidence            67888876522    0111 234678999996544 45555555334556677777 222111111  3458899986 6


Q ss_pred             HHHHHHHHHHHHHHH
Q psy6613         280 LEDACEHIAEYLEAY  294 (510)
Q Consensus       280 Ld~A~~eL~~ileai  294 (510)
                      ++..+.++..+++.+
T Consensus       181 ~e~l~~~v~~~~~~~  195 (200)
T PRK14734        181 REQLLAQVDGLIAEI  195 (200)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888888888666554

>TIGR00235 udk uridine kinase

Probab=96.96  E-value=0.014  Score=56.27  Aligned_cols=69  Identities=17%  Similarity=0.208  Sum_probs=42.6

Q ss_pred             CCceEEEEeCCCHHHHHHHHHh----cCCCcHHHHHHHH-HHHH----HHHhcCCCCccEEEe-CCCHHHHHHHHHHHHH
Q psy6613         223 LSPCIVYLKISSPKVLQRLIKS----RGKSQTRHLNVQM-VAAE----KLAQCPQEMFDVILD-ENQLEDACEHIAEYLE  292 (510)
Q Consensus       223 l~PivIFIkPPS~e~L~~rLr~----Rgt~~~e~i~kRL-~aa~----eLEq~~~~~FD~VIv-NDdLd~A~~eL~~ile  292 (510)
                      +.-++|||.+|....+.++++.    ||.... ....+. ....    +.........|+||. +.+.|.+++-|...|.
T Consensus       125 ~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~-~~~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~~~~~~~~~~~~~~  203 (207)
T TIGR00235       125 LMDLKIFVDTPLDIRLIRRIERDINERGRSLD-SVIDQYRKTVRPMYEQFVEPTKQYADLIIPEGGRNEVAINVLDTKIK  203 (207)
T ss_pred             hCCEEEEEECChhHHHHHHHHHHHHhhCCCHH-HHHHHHHHhhhhhHHHhCcccccccEEEEcCCCCchHHHHHHHHHHH
Confidence            4458899999988888877654    454433 333333 2111    111233578899996 5778888887775443

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PLN02422 dephospho-CoA kinase

Probab=96.96  E-value=0.012  Score=58.99  Aligned_cols=91  Identities=19%  Similarity=0.256  Sum_probs=57.6

Q ss_pred             CeEEEEeccCCchhHhhhc---CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEEEeCC-
Q psy6613         203 QLVVLDCDTINHPSQLAKT---NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDEN-  278 (510)
Q Consensus       203 Ki~ILDID~qg~~lq~lks---~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~VIvND-  278 (510)
                      +.+|+|+..-      ..+   .+.-.+|||..| .++..+|+..|+.-+.++...|+++..-.+. ....-|+||.|+ 
T Consensus       108 ~~vv~eipLL------~E~~~~~~~D~vI~V~a~-~e~ri~RL~~R~g~s~eea~~Ri~~Q~~~ee-k~~~AD~VI~N~g  179 (232)
T PLN02422        108 KVIVLDIPLL------FETKMDKWTKPVVVVWVD-PETQLERLMARDGLSEEQARNRINAQMPLDW-KRSKADIVIDNSG  179 (232)
T ss_pred             CEEEEEehhh------hhcchhhhCCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHHcCChhH-HHhhCCEEEECCC
Confidence            5888888552      122   234567888884 5667777777765667777778722211111 114568999997 


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy6613         279 QLEDACEHIAEYLEAYWRATHPPAAP  304 (510)
Q Consensus       279 dLd~A~~eL~~ileai~~a~h~p~~~  304 (510)
                      ++++...++..+++.+.   +|--|.
T Consensus       180 s~e~L~~qv~~ll~~l~---~~~~~~  202 (232)
T PLN02422        180 SLEDLKQQFQKVLEKIR---APLTWK  202 (232)
T ss_pred             CHHHHHHHHHHHHHHHh---cchHHH
Confidence            78888888887776663   444443

>KOG1264|consensus

Probab=96.92  E-value=0.00049  Score=78.04  Aligned_cols=56  Identities=23%  Similarity=0.395  Sum_probs=49.8

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      .+.|||||||-+..++       +|||-+|-||+.+.++.++||.|+..  +.-.|++||..-+|
T Consensus       774 ~vt~kAL~~Yka~r~D-------ELSFpk~aiItnv~keeg~wWrGdYG--g~iq~wfPsnyVee  829 (1267)
T KOG1264|consen  774 QVTVKALYDYKAKRSD-------ELSFPKGAIITNVSKEEGGWWRGDYG--GRIQQWFPSNYVEE  829 (1267)
T ss_pred             chhhhhhhccccCCcc-------cccccccceeEeeeccCCceeecccc--cceeeeccHHHhhh
Confidence            4779999999999887       59999999999999999999999983  23679999999888

>PRK05541 adenylylsulfate kinase; Provisional

Probab=96.91  E-value=0.0019  Score=60.21  Aligned_cols=134  Identities=16%  Similarity=0.112  Sum_probs=63.1

Q ss_pred             EecCcCChHHHHHHHhc-CCCC-ce-eeec-CCCchhhhh---------hhcccHHHHHH-HHHcCCeEEEEeccCCchh
Q psy6613         151 ITRVTADISLAKRSLMS-NPSK-RA-IMER-SNSRSSVLT---------EVQTEIERVYE-LASTLQLVVLDCDTINHPS  216 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~-F~-~sVs-hTTR~pFe~---------~I~TslesI~~-vi~sGKi~ILDID~qg~~l  216 (510)
                      +|++|+||||+.+.|.. .... .. ..+. ..-|..|..         +....+..+.+ +...|.+||.|.-.   +.
T Consensus        13 ~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~VI~~~~~---~~   89 (176)
T PRK05541         13 TGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYGYDKQSRIEMALKRAKLAKFLADQGMIVIVTTIS---MF   89 (176)
T ss_pred             EcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCC---cH
Confidence            89999999999998876 2211 11 1121 111221110         00011222333 44689999998532   12


Q ss_pred             Hhhh----cCCCc-eEEEEeCCCHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhcCCCCccEEEeCCC---HHHHHHH
Q psy6613         217 QLAK----TNLSP-CIVYLKISSPKVLQRLIKSRG--KSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQ---LEDACEH  286 (510)
Q Consensus       217 q~lk----s~l~P-ivIFIkPPS~e~L~~rLr~Rg--t~~~e~i~kRL~aa~eLEq~~~~~FD~VIvNDd---Ld~A~~e  286 (510)
                      .-++    ..+.+ ++||+..| .+++.+|+....  ....+.+...+.+-   ...|....|+||.|++   ++.++++
T Consensus        90 ~~~~~~~~~~~~~~~~v~l~~~-~e~~~~R~~~~l~~~~~~~~~~~~~~~~---~~~~~~~Ad~vI~~~~~~~~~~~v~~  165 (176)
T PRK05541         90 DEIYAYNRKHLPNYFEVYLKCD-MEELIRRDQKGLYTKALKGEIKNVVGVD---IPFDEPKADLVIDNSCRTSLDEKVDL  165 (176)
T ss_pred             HHHHHHHHhhcCCeEEEEEeCC-HHHHHHhchhhHHHHHHcCcccccccCC---CcccCCCCCEEEeCCCCCCHHHHHHH
Confidence            2121    12333 45677655 677777764310  00000011011000   0123234699999874   5555555


Q ss_pred             HHHHH
Q psy6613         287 IAEYL  291 (510)
Q Consensus       287 L~~il  291 (510)
                      +..++
T Consensus       166 i~~~l  170 (176)
T PRK05541        166 ILNKL  170 (176)
T ss_pred             HHHHH
Confidence            55443

>KOG2546|consensus

Probab=96.90  E-value=0.00049  Score=73.38  Aligned_cols=49  Identities=27%  Similarity=0.450  Sum_probs=44.1

Q ss_pred             EEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChh
Q psy6613          50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPV  108 (510)
Q Consensus        50 VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~  108 (510)
                      |+|+|||.+..|+       +|+|..|-||+|+.++|++||.|-.   ++-.||||.+.
T Consensus       426 Vv~iydy~~~Kdd-------eLsf~E~ailyv~kknddgw~EgV~---~~VTglFpgny  474 (483)
T KOG2546|consen  426 VVAIYDYTADKDD-------ELSFAEGAILYVLKKNDDGWYEGVQ---DGVTGLFPGNY  474 (483)
T ss_pred             HHhhccccccccc-------ccccccccEEEEEEecCCcchhhee---cCcceeccCcc
Confidence            7899999999886       5999999999999999999999977   46799999765

>PLN02200 adenylate kinase family protein

Probab=96.90  E-value=0.015  Score=57.76  Aligned_cols=142  Identities=5%  Similarity=0.074  Sum_probs=74.4

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchh----------hhhhhc----cc----HHHHHHHHH--cCCeEEEEec
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS----------VLTEVQ----TE----IERVYELAS--TLQLVVLDCD  210 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p----------Fe~~I~----Ts----lesI~~vi~--sGKi~ILDID  210 (510)
                      +||+|+||+|+.++|.+..+...++...-=|..          +...+.    .+    ...+.+.+.  .+..+|||-.
T Consensus        49 ~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~~~~~ILDG~  128 (234)
T PLN02200         49 LGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSDNNKFLIDGF  128 (234)
T ss_pred             ECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCCCeEEecCC
Confidence            899999999999999873222222221111211          001110    11    112232222  2456899988


Q ss_pred             cCCchhHhhh---c--CCCc-eEEEEeCCCHHHHHHHHHhcCC----CcHHHHHHHHH----HHHHHHhcCCCCccEEEe
Q psy6613         211 TINHPSQLAK---T--NLSP-CIVYLKISSPKVLQRLIKSRGK----SQTRHLNVQMV----AAEKLAQCPQEMFDVILD  276 (510)
Q Consensus       211 ~qg~~lq~lk---s--~l~P-ivIFIkPPS~e~L~~rLr~Rgt----~~~e~i~kRL~----aa~eLEq~~~~~FD~VIv  276 (510)
                      |..  .....   .  ...| ++||+..|. +++.+|+.+|+.    ++.+.+.+|++    ..+.+.+.|...-.++.+
T Consensus       129 Prt--~~q~~~l~~~~~~~pd~vi~Ld~~~-e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~I  205 (234)
T PLN02200        129 PRT--EENRIAFERIIGAEPNVVLFFDCPE-EEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTI  205 (234)
T ss_pred             ccc--HHHHHHHHHHhccCCCEEEEEECCH-HHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            765  33322   1  2345 566676654 667777777642    23455666662    223333433322233433


Q ss_pred             C--CCHHHHHHHHHHHHHHHH
Q psy6613         277 E--NQLEDACEHIAEYLEAYW  295 (510)
Q Consensus       277 N--DdLd~A~~eL~~ileai~  295 (510)
                      |  .+.++.++++..++....
T Consensus       206 Da~~~~eeV~~~v~~~l~~~~  226 (234)
T PLN02200        206 NAVGTVDEIFEQVRPIFAACE  226 (234)
T ss_pred             ECCCCHHHHHHHHHHHHHHcC
Confidence            3  478988888886665444

>PRK13946 shikimate kinase; Provisional

Probab=96.89  E-value=0.018  Score=54.58  Aligned_cols=136  Identities=16%  Similarity=0.141  Sum_probs=72.7

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCch-----h----hhh----hhc-ccHHHHHHHHHcCCeEEEEecc---CC
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRS-----S----VLT----EVQ-TEIERVYELASTLQLVVLDCDT---IN  213 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~-----p----Fe~----~I~-TslesI~~vi~sGKi~ILDID~---qg  213 (510)
                      +|.+|+||||+-+.|-+.- .+.+.-......     +    |..    .+. ...+.+.+++..+. ||+.+..   ..
T Consensus        16 ~G~~GsGKsti~~~LA~~L-g~~~id~D~~~~~~~g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~-~Vi~~ggg~~~~   93 (184)
T PRK13946         16 VGLMGAGKSTVGRRLATML-GLPFLDADTEIERAARMTIAEIFAAYGEPEFRDLERRVIARLLKGGP-LVLATGGGAFMN   93 (184)
T ss_pred             ECCCCCCHHHHHHHHHHHc-CCCeECcCHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCC-eEEECCCCCcCC
Confidence            8999999999999887621 121111111000     0    110    000 33456667776665 4555421   11


Q ss_pred             -chhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCC------cHHHHHHHH-HHHHHHHhcCCCCccEEEeCC--CHHHH
Q psy6613         214 -HPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKS------QTRHLNVQM-VAAEKLAQCPQEMFDVILDEN--QLEDA  283 (510)
Q Consensus       214 -~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~------~~e~i~kRL-~aa~eLEq~~~~~FD~VIvND--dLd~A  283 (510)
                       ...+.++  -..++|||..| .+++.+|+..|..-      ...+..+++ ..-..+   |. .+|++|..+  +++++
T Consensus        94 ~~~r~~l~--~~~~~v~L~a~-~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~---y~-~~dl~i~~~~~~~~~~  166 (184)
T PRK13946         94 EETRAAIA--EKGISVWLKAD-LDVLWERVSRRDTRPLLRTADPKETLARLMEERYPV---YA-EADLTVASRDVPKEVM  166 (184)
T ss_pred             HHHHHHHH--cCCEEEEEECC-HHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHH---HH-hCCEEEECCCCCHHHH
Confidence             0012222  24678999875 67788888776532      122333444 222222   32 378888544  46788


Q ss_pred             HHHHHHHHHHHH
Q psy6613         284 CEHIAEYLEAYW  295 (510)
Q Consensus       284 ~~eL~~ileai~  295 (510)
                      ++.+.++|..+.
T Consensus       167 ~~~i~~~i~~~~  178 (184)
T PRK13946        167 ADEVIEALAAYL  178 (184)
T ss_pred             HHHHHHHHHHhh
Confidence            888887776654

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=96.84  E-value=0.014  Score=56.23  Aligned_cols=85  Identities=20%  Similarity=0.235  Sum_probs=49.4

Q ss_pred             CCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEEEeCC-CH
Q psy6613         202 LQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDEN-QL  280 (510)
Q Consensus       202 GKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~VIvND-dL  280 (510)
                      ...|++|+..--  -.-+. .+.-.+|||..| .++-.+|+..|+..+.++..+|+....-++. ....-|+||.|+ ++
T Consensus       107 ~~~vv~e~pll~--E~~~~-~~~D~ii~V~a~-~e~r~~Rl~~R~g~s~e~~~~ri~~Q~~~~~-k~~~aD~vI~N~g~~  181 (195)
T PRK14730        107 NPIVVLVIPLLF--EAKLT-DLCSEIWVVDCS-PEQQLQRLIKRDGLTEEEAEARINAQWPLEE-KVKLADVVLDNSGDL  181 (195)
T ss_pred             CCEEEEEeHHhc--CcchH-hCCCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhCCCHHH-HHhhCCEEEECCCCH
Confidence            468888886532  00011 233467888876 4555556666654566677777722111111 124679999986 67


Q ss_pred             HHHHHHHHHHH
Q psy6613         281 EDACEHIAEYL  291 (510)
Q Consensus       281 d~A~~eL~~il  291 (510)
                      ++...++..++
T Consensus       182 e~l~~qv~~~l  192 (195)
T PRK14730        182 EKLYQQVDQLL  192 (195)
T ss_pred             HHHHHHHHHHH
Confidence            77777777443

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=96.79  E-value=0.018  Score=59.48  Aligned_cols=140  Identities=16%  Similarity=0.092  Sum_probs=75.8

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCch----h---hh---hhhc--ccHHHHHHHHHcCCeEEEEeccCCchhH
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRS----S---VL---TEVQ--TEIERVYELASTLQLVVLDCDTINHPSQ  217 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~----p---Fe---~~I~--TslesI~~vi~sGKi~ILDID~qg~~lq  217 (510)
                      +|++|+||||+-+.|.+ .--.|.-......+.    .   |.   ....  ...+.+.+++.....+|+.... | ++.
T Consensus       139 ~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~~VI~~Gg-g-~v~  216 (309)
T PRK08154        139 IGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLSVSEIFALYGQEGYRRLERRALERLIAEHEEMVLATGG-G-IVS  216 (309)
T ss_pred             ECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCCEEEECCC-c-hhC
Confidence            99999999999999876 221122111000000    0   10   0001  3445567766655556666532 2 111


Q ss_pred             h---hhc-CCCceEEEEeCCCHHHHHHHHHhcCCC----c---HHHHHHHH-HHHHHHHhcCCCCccEEEeCC--CHHHH
Q psy6613         218 L---AKT-NLSPCIVYLKISSPKVLQRLIKSRGKS----Q---TRHLNVQM-VAAEKLAQCPQEMFDVILDEN--QLEDA  283 (510)
Q Consensus       218 ~---lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~----~---~e~i~kRL-~aa~eLEq~~~~~FD~VIvND--dLd~A  283 (510)
                      .   .+. .-..++|||..| .+++.+|+..++..    .   ..+..+.+ ..-..+.    ..+|++|.++  +++++
T Consensus       217 ~~~~~~~l~~~~~~V~L~a~-~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y----~~ad~~I~t~~~s~ee~  291 (309)
T PRK08154        217 EPATFDLLLSHCYTVWLKAS-PEEHMARVRAQGDLRPMADNREAMEDLRRILASREPLY----ARADAVVDTSGLTVAQS  291 (309)
T ss_pred             CHHHHHHHHhCCEEEEEECC-HHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHH----HhCCEEEECCCCCHHHH
Confidence            1   111 114578999876 77788888765421    1   11222333 2222222    2489999886  47899


Q ss_pred             HHHHHHHHHHHHHh
Q psy6613         284 CEHIAEYLEAYWRA  297 (510)
Q Consensus       284 ~~eL~~ileai~~a  297 (510)
                      ++++..++..+...
T Consensus       292 ~~~I~~~l~~~~~~  305 (309)
T PRK08154        292 LARLRELVRPALGL  305 (309)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999777766543

>PRK14527 adenylate kinase; Provisional

Probab=96.78  E-value=0.019  Score=54.52  Aligned_cols=139  Identities=11%  Similarity=0.056  Sum_probs=71.1

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCch------h----hhhhhc----c----cHHHHHHHHHc--CCeEEEEec
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRS------S----VLTEVQ----T----EIERVYELAST--LQLVVLDCD  210 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~------p----Fe~~I~----T----slesI~~vi~s--GKi~ILDID  210 (510)
                      +||+|+||+|+.+.|.+....-.++...--|.      +    ....+.    .    -...+.+.+.+  +..+|||--
T Consensus        12 ~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~~~~VlDGf   91 (191)
T PRK14527         12 LGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEPVRVIFDGF   91 (191)
T ss_pred             ECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCCCcEEEcCC
Confidence            99999999999999886111111111000010      0    000011    1    22333444443  456899976


Q ss_pred             cCCchhHh--hh----c-CCCce-EEEEeCCCHHHHHHHHHhcCC------CcHHHHHHHH----HHHHHHHhcCCCCcc
Q psy6613         211 TINHPSQL--AK----T-NLSPC-IVYLKISSPKVLQRLIKSRGK------SQTRHLNVQM----VAAEKLAQCPQEMFD  272 (510)
Q Consensus       211 ~qg~~lq~--lk----s-~l~Pi-vIFIkPPS~e~L~~rLr~Rgt------~~~e~i~kRL----~aa~eLEq~~~~~FD  272 (510)
                      |.. ..+.  +.    . ...+. +||+..| .+++.+|+.+|+.      ++.+.+.+|+    +....+...|.+.-=
T Consensus        92 pr~-~~q~~~~~~~~~~~g~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~  169 (191)
T PRK14527         92 PRT-LAQAEALDRLLEELGARLLAVVLLEVP-DEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVDYYEARGH  169 (191)
T ss_pred             CCC-HHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence            644 2222  11    1 23454 4555554 5788888877652      3456677777    222334444433211


Q ss_pred             -EEE-eCCCHHHHHHHHHHHH
Q psy6613         273 -VIL-DENQLEDACEHIAEYL  291 (510)
Q Consensus       273 -~VI-vNDdLd~A~~eL~~il  291 (510)
                       ++| .+.+.++.++++..+|
T Consensus       170 ~~~id~~~~~~~v~~~i~~~l  190 (191)
T PRK14527        170 LKRVDGLGTPDEVYARILKAL  190 (191)
T ss_pred             EEEEECCCCHHHHHHHHHHhh
Confidence             223 3467999999888554

>PRK13947 shikimate kinase; Provisional

Probab=96.76  E-value=0.016  Score=53.34  Aligned_cols=134  Identities=13%  Similarity=0.134  Sum_probs=66.5

Q ss_pred             eE-EecCcCChHHHHHHHhc-CCCCceeeecCC---Cchh----hhhh----hc-ccHHHHHHHHHcCCeEEEEecc---
Q psy6613         149 II-ITRVTADISLAKRSLMS-NPSKRAIMERSN---SRSS----VLTE----VQ-TEIERVYELASTLQLVVLDCDT---  211 (510)
Q Consensus       149 pI-~GPsGvGKsTL~~rLL~-~P~~F~~sVshT---TR~p----Fe~~----I~-TslesI~~vi~sGKi~ILDID~---  211 (510)
                      ++ +|++|+||||+.++|-+ ..-.|.-.-...   +-.+    |+..    +. .....++++...+ .||+.+..   
T Consensus         4 I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~-~~vi~~g~g~v   82 (171)
T PRK13947          4 IVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVKKLARLK-NLVIATGGGVV   82 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcCCcHHHHHHHhChHHHHHHHHHHHHHHhhcC-CeEEECCCCCc
Confidence            55 89999999999998876 322232111110   0001    1110    11 2333455554443 45554321   


Q ss_pred             ---CCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCC---cHHHHHHHH-HHHHHHHhcCCCCccEEEeC--CCHHH
Q psy6613         212 ---INHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKS---QTRHLNVQM-VAAEKLAQCPQEMFDVILDE--NQLED  282 (510)
Q Consensus       212 ---qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~---~~e~i~kRL-~aa~eLEq~~~~~FD~VIvN--DdLd~  282 (510)
                         ..  .+.++.  ..++||+.. +.+.+.+|+..|+..   .......++ +.-.+....| ..+|++|..  .+.++
T Consensus        83 l~~~~--~~~l~~--~~~vv~L~~-~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~r~~~y-~~ad~~Idt~~~~~~~  156 (171)
T PRK13947         83 LNPEN--VVQLRK--NGVVICLKA-RPEVILRRVGKKKSRPLLMVGDPEERIKELLKEREPFY-DFADYTIDTGDMTIDE  156 (171)
T ss_pred             CCHHH--HHHHHh--CCEEEEEEC-CHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHH-HhcCEEEECCCCCHHH
Confidence               11  222322  236889887 578888888765421   111222333 1111112222 246888874  46778


Q ss_pred             HHHHHHH
Q psy6613         283 ACEHIAE  289 (510)
Q Consensus       283 A~~eL~~  289 (510)
                      +++++.+
T Consensus       157 i~~~I~~  163 (171)
T PRK13947        157 VAEEIIK  163 (171)
T ss_pred             HHHHHHH
Confidence            8888774

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=96.73  E-value=0.015  Score=54.32  Aligned_cols=96  Identities=16%  Similarity=0.089  Sum_probs=51.8

Q ss_pred             CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh------hhhhhc------------ccHHHHHHHHHc---CCeE
Q psy6613         148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS------VLTEVQ------------TEIERVYELAST---LQLV  205 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p------Fe~~I~------------TslesI~~vi~s---GKi~  205 (510)
                      |++ +||+|+||||+.+.|.+......+++...-|..      ....+.            .-.+-+...+..   ++.+
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~   80 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGF   80 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCE
Confidence            355 999999999999999873322233332222221      001110            112334444443   5778


Q ss_pred             EEEeccCCchhHh---hhcCC----Cc-eEEEEeCCCHHHHHHHHHhcC
Q psy6613         206 VLDCDTINHPSQL---AKTNL----SP-CIVYLKISSPKVLQRLIKSRG  246 (510)
Q Consensus       206 ILDID~qg~~lq~---lks~l----~P-ivIFIkPPS~e~L~~rLr~Rg  246 (510)
                      |+|--|..  ...   +...+    .| ++||+..| .+++.+|+..|+
T Consensus        81 vldg~Pr~--~~q~~~l~~~~~~~~~~~~~i~l~~~-~~~~~~Rl~~R~  126 (194)
T cd01428          81 ILDGFPRT--VDQAEALDELLDEGIKPDKVIELDVP-DEVLIERILGRR  126 (194)
T ss_pred             EEeCCCCC--HHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCC
Confidence            99976654  222   22211    34 45555554 678888887775

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=96.72  E-value=0.022  Score=53.77  Aligned_cols=135  Identities=15%  Similarity=0.128  Sum_probs=71.8

Q ss_pred             CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh---------hhh----hhc-ccHHHHHHHHHcCCeEEEEeccC
Q psy6613         148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS---------VLT----EVQ-TEIERVYELASTLQLVVLDCDTI  212 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p---------Fe~----~I~-TslesI~~vi~sGKi~ILDID~q  212 (510)
                      +++ +||+|+||||+.+.|.... .+.+......+..         |+.    .+. -..+.+.++...+ .+++.+...
T Consensus         6 ~I~liG~~GaGKStl~~~La~~l-~~~~vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~-~~vi~~ggg   83 (172)
T PRK05057          6 NIFLVGPMGAGKSTIGRQLAQQL-NMEFYDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINELTEKQ-GIVLATGGG   83 (172)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHc-CCcEEECCchHHHHhCcCHhHHHHHhCHHHHHHHHHHHHHHHHhCC-CEEEEcCCc
Confidence            354 9999999999999987621 2333333322221         110    000 2344555555544 455655321


Q ss_pred             Cch-----hHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCC------cHHHHHHHH-HHHHHHHhcCCCCccEEEeCCC-
Q psy6613         213 NHP-----SQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKS------QTRHLNVQM-VAAEKLAQCPQEMFDVILDENQ-  279 (510)
Q Consensus       213 g~~-----lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~------~~e~i~kRL-~aa~eLEq~~~~~FD~VIvNDd-  279 (510)
                      . +     .+.++.  .-++||+..| .+++.+|++.++.-      ...+....| ..-.   ..|....|++|.+++ 
T Consensus        84 ~-v~~~~~~~~l~~--~~~vv~L~~~-~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~---~~Y~~~Ad~~idt~~~  156 (172)
T PRK05057         84 S-VKSRETRNRLSA--RGVVVYLETT-IEKQLARTQRDKKRPLLQVDDPREVLEALANERN---PLYEEIADVTIRTDDQ  156 (172)
T ss_pred             h-hCCHHHHHHHHh--CCEEEEEeCC-HHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHH---HHHHhhCCEEEECCCC
Confidence            1 1     122332  3478998886 67777777653211      112334444 2222   234456789997665 


Q ss_pred             -HHHHHHHHHHHH
Q psy6613         280 -LEDACEHIAEYL  291 (510)
Q Consensus       280 -Ld~A~~eL~~il  291 (510)
                       .++.++++.+.+
T Consensus       157 s~~ei~~~i~~~l  169 (172)
T PRK05057        157 SAKVVANQIIHML  169 (172)
T ss_pred             CHHHHHHHHHHHH
Confidence             667777776544

>KOG3632|consensus

Probab=96.52  E-value=0.0021  Score=74.23  Aligned_cols=67  Identities=18%  Similarity=0.285  Sum_probs=50.3

Q ss_pred             cCCCeeEEEEeeccCCCCCCCCC-CCCccccccCCceEEEEee-cCCCceEEEEccCCCceeeecChhHHHHH
Q psy6613          43 AKNVAFAVRTNVKYDGSIDDDSP-VHGYAVSFDIHEFLHIKEK-YDSNWWIGRLVKEGSECGFIPSPVKLENL  113 (510)
Q Consensus        43 ~k~~~~~VRAlfdY~~~~D~~iP-c~e~~LsF~~GDiL~V~~~-~d~~WWqar~v~~~~~~GlIPS~~~~Err  113 (510)
                      +-|..+|| |+||||+-.=+-.| .-|-+|.|+.|+||.|... +-.++++|..   +++.|+||++..+|.-
T Consensus      1135 ~lparifV-AlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~---ngr~GlIPcNmvae~~ 1203 (1335)
T KOG3632|consen 1135 ALPARIFV-ALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGEL---NGRRGLIPCNMVAEQP 1203 (1335)
T ss_pred             cCcceeeE-eeeccCccccCCCCChhhhccccccCcEEEEeccccccceeeccc---cccccccccccccccc
Confidence            34556667 99999997643222 2345899999999999985 4457888876   6799999998887643

>KOG4575|consensus

Probab=96.52  E-value=0.0027  Score=70.63  Aligned_cols=57  Identities=23%  Similarity=0.438  Sum_probs=48.5

Q ss_pred             CCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChh
Q psy6613          44 KNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPV  108 (510)
Q Consensus        44 k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~  108 (510)
                      +...|.|||+|.+.|+...       .|.|..||+++++.-.|+-||.++..+. ...|++||+-
T Consensus         5 ~q~p~~vrA~y~w~ge~eG-------dl~f~egDlie~trI~dgkwwi~lhrNk-~~~g~fpsNF   61 (874)
T KOG4575|consen    5 KQLPCMVRALYAWPGEREG-------DLKFTEGDLIEQTRIEDGKWWILLHRNK-DEDGLFPSNF   61 (874)
T ss_pred             cCCCceEEeeccCCCCccc-------ccceecccceeEEeeccceeeeeeeecc-cccccCcccc
Confidence            3457889999999999864       5999999999999999999999998643 4789999953

>KOG1029|consensus

Probab=96.50  E-value=0.0012  Score=74.58  Aligned_cols=53  Identities=23%  Similarity=0.517  Sum_probs=45.7

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      .+..|+|.|.+..|.+       |+|.+||+|.|+++. +.||.|..   .|+.|+||+.+-.|
T Consensus       814 lq~iA~y~wrakke~d-------LsFskgd~I~Vlekq-emwW~G~v---~g~~GwFPksYVk~  866 (1118)
T KOG1029|consen  814 LQAIALYPWRAKKEND-------LSFSKGDTITVLEKQ-EMWWFGEV---AGEIGWFPKSYVKE  866 (1118)
T ss_pred             hhHHhhcccccccccc-------ccccCCCeeeeehhc-cceecccc---cCccCcCcHHhhhh
Confidence            4567999999998865       999999999999985 56999955   57899999988776

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.46  E-value=0.019  Score=54.50  Aligned_cols=61  Identities=16%  Similarity=0.190  Sum_probs=34.9

Q ss_pred             CceEEEEeCCCHHHHHHHHH----hcCCCcHHHHHHHH-HHHH----HHHhcCCCCccEEEeCCC-HHHHHH
Q psy6613         224 SPCIVYLKISSPKVLQRLIK----SRGKSQTRHLNVQM-VAAE----KLAQCPQEMFDVILDENQ-LEDACE  285 (510)
Q Consensus       224 ~PivIFIkPPS~e~L~~rLr----~Rgt~~~e~i~kRL-~aa~----eLEq~~~~~FD~VIvNDd-Ld~A~~  285 (510)
                      .-++|||..|.-..+++|+.    .||.+. +....++ ....    +....+...+|+||.|++ .+.+..
T Consensus       119 ~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~-~~~~~~~~~~~~~~~~~~i~~~~~~aD~ii~~~~~~~~~~~  189 (198)
T cd02023         119 MDLKIFVDTDADVRLIRRIERDIVERGRDL-ESVINQYLKFVKPMHEQFIEPTKRYADVIIPRGGDNHVAID  189 (198)
T ss_pred             cCeEEEEECChhHHHHHHHHHHhhhcCCCH-HHHHHHHHHhhhhhHHHhCccchhceeEEECCCCCccHHHH
Confidence            34789999987666776663    345432 3333444 2222    112335678999998654 444444

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK13974 thymidylate kinase; Provisional

Probab=96.45  E-value=0.034  Score=54.07  Aligned_cols=100  Identities=14%  Similarity=0.038  Sum_probs=50.9

Q ss_pred             HHHHHHcCCeEEEEecc------CCch-------hHhhhc----CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH
Q psy6613         195 VYELASTLQLVVLDCDT------INHP-------SQLAKT----NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM  257 (510)
Q Consensus       195 I~~vi~sGKi~ILDID~------qg~~-------lq~lks----~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL  257 (510)
                      |...+..|++||.|=-+      +|.+       +..+..    .+.|-++|..=-+.+++.+|+..|+.+.-+......
T Consensus        88 i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~dD~~e~~~~~y  167 (212)
T PRK13974         88 IRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKPDRIEAEGIEF  167 (212)
T ss_pred             HHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcccCchhhhhHHH
Confidence            56667889998866421      1100       112211    245655554444577888888777654333222222


Q ss_pred             -HHHHHHHhcCCCCccEEEe--CCCHHHHHHHHHHHHHHH
Q psy6613         258 -VAAEKLAQCPQEMFDVILD--ENQLEDACEHIAEYLEAY  294 (510)
Q Consensus       258 -~aa~eLEq~~~~~FD~VIv--NDdLd~A~~eL~~ileai  294 (510)
                       ..-.+....|....-++.+  +.+.++.++++..+|...
T Consensus       168 ~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~~  207 (212)
T PRK13974        168 LERVAEGFALIAEERNWKVISADQSIETISNEIKETLLNN  207 (212)
T ss_pred             HHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence             2222221111111233333  346888889998777654

>KOG0197|consensus

Probab=96.42  E-value=0.00083  Score=73.10  Aligned_cols=57  Identities=25%  Similarity=0.441  Sum_probs=49.4

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCce-EEEEeecCCCceEEEEccCCCceeeecChhHHHHH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEF-LHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENL  113 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDi-L~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~Err  113 (510)
                      .+-|+|||.+..+.       .|+|.+||+ ++|+++.+.+||.+|... .+..|+||++...+.+
T Consensus        13 ~~valyd~~s~~~~-------dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~-~~~~g~ip~N~v~~~~   70 (468)
T KOG0197|consen   13 IVVALYDYASRTPE-------DLSFRKGDVVLILLETTNGDWWRARSLQ-LGQEGYIPSNYVARNR   70 (468)
T ss_pred             eEEEeccccCCCcc-------ccccccCceEEEeeccCChhHHHHHHhh-cCCCCcCcCceeeccc
Confidence            35599999999865       499999999 999999999999999864 4688999999988763

>PRK14526 adenylate kinase; Provisional

Probab=96.35  E-value=0.06  Score=52.87  Aligned_cols=141  Identities=14%  Similarity=0.169  Sum_probs=75.9

Q ss_pred             eE-EecCcCChHHHHHHHhcCCCCceeeecCCCch------h----hhhhhc--------ccHHHHHHHHH---cCCeEE
Q psy6613         149 II-ITRVTADISLAKRSLMSNPSKRAIMERSNSRS------S----VLTEVQ--------TEIERVYELAS---TLQLVV  206 (510)
Q Consensus       149 pI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~------p----Fe~~I~--------TslesI~~vi~---sGKi~I  206 (510)
                      ++ +||+|+||+|+.+.|........++.-.--|.      +    ....+.        .-.+-|.+.++   .++..|
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~i   82 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNFI   82 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcEE
Confidence            44 99999999999998876221111111111111      1    111111        11222333332   246688


Q ss_pred             EEeccCCchhHhhhc--C-C-CceEEEEeCCCHHHHHHHHHhcC---------------------------------CCc
Q psy6613         207 LDCDTINHPSQLAKT--N-L-SPCIVYLKISSPKVLQRLIKSRG---------------------------------KSQ  249 (510)
Q Consensus       207 LDID~qg~~lq~lks--~-l-~PivIFIkPPS~e~L~~rLr~Rg---------------------------------t~~  249 (510)
                      ||-=|..  ......  . + ...+|++..| .+++.+|+.+|.                                 .++
T Consensus        83 lDGfPR~--~~Qa~~l~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~  159 (211)
T PRK14526         83 LDGFPRN--INQAKALDKFLPNIKIINFLID-EELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDK  159 (211)
T ss_pred             EECCCCC--HHHHHHHHHhcCCCEEEEEECC-HHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCC
Confidence            8987766  444443  2 2 2456666654 578888877653                                 344


Q ss_pred             HHHHHHHH----HHHHHHHhcCCC--CccEEEeCCCHHHHHHHHHHHHH
Q psy6613         250 TRHLNVQM----VAAEKLAQCPQE--MFDVILDENQLEDACEHIAEYLE  292 (510)
Q Consensus       250 ~e~i~kRL----~aa~eLEq~~~~--~FD~VIvNDdLd~A~~eL~~ile  292 (510)
                      .+.+.+||    +....+...|..  .+-.|=-+.+.++.+++|..+|+
T Consensus       160 ~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~  208 (211)
T PRK14526        160 EESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIIS  208 (211)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence            67888888    222334444432  22222234678999999986664

>PRK02496 adk adenylate kinase; Provisional

Probab=96.34  E-value=0.054  Score=50.82  Aligned_cols=141  Identities=13%  Similarity=0.082  Sum_probs=71.1

Q ss_pred             CeE-EecCcCChHHHHHHHhc-CCCCceeeecCCCchhh----------hhhhc----cc----HHHHHHHHH---cCCe
Q psy6613         148 MII-ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSSV----------LTEVQ----TE----IERVYELAS---TLQL  204 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~pF----------e~~I~----Ts----lesI~~vi~---sGKi  204 (510)
                      |++ +||+|+||||+.+.|.+ +. .-.++....-|..+          ...+.    .+    .+-+.+.+.   ....
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~~-~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g   81 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHLH-IPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANG   81 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-CcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCC
Confidence            455 99999999999998876 32 11222111112110          00010    11    122233222   2345


Q ss_pred             EEEEeccCCchhHh--hhc-----CCCceE-EEEeCCCHHHHHHHHHhcCCC--cHHHHHHHHHHH----HHHHhcCCCC
Q psy6613         205 VVLDCDTINHPSQL--AKT-----NLSPCI-VYLKISSPKVLQRLIKSRGKS--QTRHLNVQMVAA----EKLAQCPQEM  270 (510)
Q Consensus       205 ~ILDID~qg~~lq~--lks-----~l~Piv-IFIkPPS~e~L~~rLr~Rgt~--~~e~i~kRL~aa----~eLEq~~~~~  270 (510)
                      .|||--|.. ..+.  +..     ...|.. ||+.+ +.+++.+|+..|+..  ..+.+.+|+..=    ..+...|...
T Consensus        82 ~vldGfPr~-~~q~~~l~~~~~~~~~~~~~vi~l~~-~~~~~~~Rl~~R~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~  159 (184)
T PRK02496         82 WILDGFPRK-VTQAAFLDELLQEIGQSGERVVNLDV-PDDVVVERLLARGRKDDTEEVIRRRLEVYREQTAPLIDYYRDR  159 (184)
T ss_pred             EEEeCCCCC-HHHHHHHHHHHHhcCCCCCEEEEEeC-CHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            788877654 2221  111     234544 55555 588899999888753  345566666221    2233333222


Q ss_pred             ccEEEeC--CCHHHHHHHHHHHH
Q psy6613         271 FDVILDE--NQLEDACEHIAEYL  291 (510)
Q Consensus       271 FD~VIvN--DdLd~A~~eL~~il  291 (510)
                      --++.++  .++++.++++..+|
T Consensus       160 ~~~~~Ida~~~~~~V~~~i~~~l  182 (184)
T PRK02496        160 QKLLTIDGNQSVEAVTTELKAAL  182 (184)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh
Confidence            2234443  56888888777443

>KOG1843|consensus

Probab=96.32  E-value=0.002  Score=68.67  Aligned_cols=50  Identities=24%  Similarity=0.510  Sum_probs=42.8

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecC--CCceEEEEccCCCceeeecChh
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYD--SNWWIGRLVKEGSECGFIPSPV  108 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d--~~WWqar~v~~~~~~GlIPS~~  108 (510)
                      .+.|+|+|.+..-.       .|+|++||||.|+++.+  ++||.|+.   ++..|++|-+.
T Consensus       418 ~a~a~ysfage~~G-------Dl~f~kgDii~il~ks~s~~dwwtgr~---~~~egifPany  469 (473)
T KOG1843|consen  418 IATALYSFAGEQPG-------DLSFQKGDIITILKKSDSANDWWTGRG---NGYEGIFPANY  469 (473)
T ss_pred             eeeeeehhccCCCC-------CcccccCceEEEecCCcchhhHHHhhc---cccccccccce
Confidence            57899999998765       48999999999999865  58999997   57899999764

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=96.32  E-value=0.041  Score=52.77  Aligned_cols=134  Identities=13%  Similarity=0.104  Sum_probs=70.7

Q ss_pred             CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh-----------hhhhhc------------ccHHHHHHHHHcC-
Q psy6613         148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS-----------VLTEVQ------------TEIERVYELASTL-  202 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p-----------Fe~~I~------------TslesI~~vi~sG-  202 (510)
                      |++ +||+|+||+|+.++|.+.     +.++|-+.--           +...++            .-...|.+-+... 
T Consensus         2 riiilG~pGaGK~T~A~~La~~-----~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d   76 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK-----LGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEAD   76 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH-----hCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhc
Confidence            444 999999999999999882     1255544211           111111            1112222222222 


Q ss_pred             --CeEEEEeccCCchhHh---hhc---C---CCceEEEEeCCCHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHhcCC
Q psy6613         203 --QLVVLDCDTINHPSQL---AKT---N---LSPCIVYLKISSPKVLQRLIKSRG---KSQTRHLNVQMVAAEKLAQCPQ  268 (510)
Q Consensus       203 --Ki~ILDID~qg~~lq~---lks---~---l~PivIFIkPPS~e~L~~rLr~Rg---t~~~e~i~kRL~aa~eLEq~~~  268 (510)
                        ..+|+|--|..  +.+   ++.   .   -...++.+..|. +.+-.|+..|.   .+..+.+.+|+..-++-..---
T Consensus        77 ~~~~~I~dg~PR~--~~qa~~l~r~l~~~g~~~d~v~~~~~~~-~~~~~r~~~r~~r~dd~~~~~~~R~~~y~~~~~pli  153 (178)
T COG0563          77 CKAGFILDGFPRT--LCQARALKRLLKELGVRLDMVIELDVPE-ELLLERLLGRRVREDDNEETVKKRLKVYHEQTAPLI  153 (178)
T ss_pred             ccCeEEEeCCCCc--HHHHHHHHHHHHHcCCCcceEEeeeCCH-HHHHHHHhCccccccCCHHHHHHHHHHHHhcccchh
Confidence              26777777655  333   332   1   124678888888 88888887764   3455667777722222111111


Q ss_pred             CCccEEEe-CCCHHHHHHHHHH
Q psy6613         269 EMFDVILD-ENQLEDACEHIAE  289 (510)
Q Consensus       269 ~~FD~VIv-NDdLd~A~~eL~~  289 (510)
                      .+|.+.|. ...+++.++++..
T Consensus       154 ~~y~~~id~~~~i~~v~~~i~~  175 (178)
T COG0563         154 EYYSVTIDGSGEIEEVLADILK  175 (178)
T ss_pred             hhheeeccCCCCHHHHHHHHHH
Confidence            23333333 2446666666653

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=96.31  E-value=0.041  Score=49.36  Aligned_cols=125  Identities=17%  Similarity=0.101  Sum_probs=62.0

Q ss_pred             EEecCcCChHHHHHHHhc-CCCCceeeecC----CCch--h-hhhh---hc--ccHHHHHHHHHcCCeEEEEeccCCchh
Q psy6613         150 IITRVTADISLAKRSLMS-NPSKRAIMERS----NSRS--S-VLTE---VQ--TEIERVYELASTLQLVVLDCDTINHPS  216 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~-~P~~F~~sVsh----TTR~--p-Fe~~---I~--TslesI~~vi~sGKi~ILDID~qg~~l  216 (510)
                      |+|++|+||+|+.+.|.+ ..-.|--.-..    +...  . |+..   ..  ...+.+..+...+ .+|++..... ..
T Consensus         4 l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~vi~~g~~~-i~   81 (154)
T cd00464           4 LIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMSIPEIFAEEGEEGFRELEREVLLLLLTKE-NAVIATGGGA-VL   81 (154)
T ss_pred             EEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHhccC-CcEEECCCCc-cC
Confidence            389999999999999876 32222111100    0000  0 1100   00  2223445555555 5566543211 11


Q ss_pred             Hh--hhc-CCCceEEEEeCCCHHHHHHHHHhcCC-----CcH-HHHHHHHHHHHHHHhcCCCCccEEEeCCCH
Q psy6613         217 QL--AKT-NLSPCIVYLKISSPKVLQRLIKSRGK-----SQT-RHLNVQMVAAEKLAQCPQEMFDVILDENQL  280 (510)
Q Consensus       217 q~--lks-~l~PivIFIkPPS~e~L~~rLr~Rgt-----~~~-e~i~kRL~aa~eLEq~~~~~FD~VIvNDdL  280 (510)
                      ..  .+. .-.-++|||..| .+++.+|+..|+.     ... +.....+..-.+   .|....|++|..+++
T Consensus        82 ~~~~~~~~~~~~~~i~l~~~-~e~~~~R~~~r~~r~~~~~~~~~~~~~~~~~r~~---~Y~~~ad~~i~~~~~  150 (154)
T cd00464          82 REENRRLLLENGIVVWLDAS-PEELLERLARDKTRPLLQDEDPERLRELLEEREP---LYREVADLTIDTDEL  150 (154)
T ss_pred             cHHHHHHHHcCCeEEEEeCC-HHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHHH---HHHHhCcEEEECCCC
Confidence            11  111 224578999887 8888888877631     111 122222232222   233458999987765

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=96.31  E-value=0.029  Score=52.99  Aligned_cols=70  Identities=11%  Similarity=0.142  Sum_probs=40.7

Q ss_pred             CeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCCC
Q psy6613         203 QLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVILDENQ  279 (510)
Q Consensus       203 Ki~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvNDd  279 (510)
                      ..+|+|+..--   + ... .+.-.+|||..|.... .+|+..|+..+.++...|+ .+...-+  +....|+||.|+.
T Consensus       104 ~~vive~plL~---e-~~~~~~~D~vv~V~a~~~~r-i~Rl~~Rd~~s~~~~~~r~~~Q~~~~~--~~~~aD~vI~N~~  175 (179)
T cd02022         104 KVVVLDIPLLF---E-TGLEKLVDRVIVVDAPPEIQ-IERLMKRDGLSEEEAEARIASQMPLEE--KRARADFVIDNSG  175 (179)
T ss_pred             CEEEEEehHhh---c-CCcHHhCCeEEEEECCHHHH-HHHHHHcCCCCHHHHHHHHHhcCCHHH--HHHhCCEEEECcC
Confidence            57888875421   1 111 2345779999875544 4455556555667777777 3221111  2357799999974

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=96.30  E-value=0.099  Score=51.36  Aligned_cols=85  Identities=9%  Similarity=0.182  Sum_probs=51.1

Q ss_pred             CCeEEEEeccCCchhHh-hh-cCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HH---HHHHHhcCCCCccEEE
Q psy6613         202 LQLVVLDCDTINHPSQL-AK-TNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VA---AEKLAQCPQEMFDVIL  275 (510)
Q Consensus       202 GKi~ILDID~qg~~lq~-lk-s~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~a---a~eLEq~~~~~FD~VI  275 (510)
                      ...|++|+..--   +. .+ ..+.-.+|+|..|--..+++. ..|+.-+.++...|+ .+   .++++     .-|+||
T Consensus       108 ~~~vv~eipLL~---E~~~~~~~~~D~vi~V~a~~e~ri~Rl-~~Rd~~s~~~a~~ri~~Q~~~eek~~-----~aD~VI  178 (204)
T PRK14733        108 TVMTIVDIPLLG---PYNFRHYDYLKKVIVIKADLETRIRRL-MERDGKNRQQAVAFINLQISDKEREK-----IADFVI  178 (204)
T ss_pred             CCeEEEEechhh---hccCchhhhCCEEEEEECCHHHHHHHH-HHcCCCCHHHHHHHHHhCCCHHHHHH-----hCCEEE
Confidence            357888885421   11 00 122345788887755555544 445444566777777 22   22333     449999


Q ss_pred             eCCC--HHHHHHHHHHHHHHHH
Q psy6613         276 DENQ--LEDACEHIAEYLEAYW  295 (510)
Q Consensus       276 vNDd--Ld~A~~eL~~ileai~  295 (510)
                      .|+.  ++..-.++.++++.+-
T Consensus       179 ~N~g~~~~~l~~~~~~~~~~~~  200 (204)
T PRK14733        179 DNTELTDQELESKLITTINEIT  200 (204)
T ss_pred             ECcCCCHHHHHHHHHHHHHHHH
Confidence            9865  6888888887777663

>PRK13973 thymidylate kinase; Provisional

Probab=96.28  E-value=0.071  Score=51.85  Aligned_cols=103  Identities=13%  Similarity=-0.023  Sum_probs=56.2

Q ss_pred             HHHHHHHcCCeEEEEecc------CCc-------hhHhhhc----CCCceEEEEeCCCHHHHHHHHHhcCCCc----HH-
Q psy6613         194 RVYELASTLQLVVLDCDT------INH-------PSQLAKT----NLSPCIVYLKISSPKVLQRLIKSRGKSQ----TR-  251 (510)
Q Consensus       194 sI~~vi~sGKi~ILDID~------qg~-------~lq~lks----~l~PivIFIkPPS~e~L~~rLr~Rgt~~----~e-  251 (510)
                      .|...+++|++||+|=-.      ||.       .+..+..    .+.|=.||+.=-+.+++.+|+..|+...    .+ 
T Consensus        81 ~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~e~  160 (213)
T PRK13973         81 VIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFEK  160 (213)
T ss_pred             HHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCchhh
Confidence            367778899999999654      220       0112211    1346444444445778888887775422    11 


Q ss_pred             ---HHHHHH-HHHHHHHhcCCCCccEEEeCCCHHHHHHHHHHHHHHHHH
Q psy6613         252 ---HLNVQM-VAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWR  296 (510)
Q Consensus       252 ---~i~kRL-~aa~eLEq~~~~~FD~VIvNDdLd~A~~eL~~ileai~~  296 (510)
                         +..++. +.-.++...+++.|..|=-+.++++.+.++..+|..++.
T Consensus       161 ~~~~~~~~~~~~y~~l~~~~~~~~~~Ida~~~~e~V~~~I~~~i~~~~~  209 (213)
T PRK13973        161 EDLAFHEKRREAFLQIAAQEPERCVVIDATASPEAVAAEIWAAVDQRLL  209 (213)
T ss_pred             chHHHHHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHHHHHHh
Confidence               122222 333334333433332222346689999999988877655

>PRK13976 thymidylate kinase; Provisional

Probab=96.20  E-value=0.044  Score=53.66  Aligned_cols=144  Identities=10%  Similarity=-0.025  Sum_probs=77.2

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh----hhhhhc-----------------------ccH-HHHHHHHHc
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS----VLTEVQ-----------------------TEI-ERVYELAST  201 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p----Fe~~I~-----------------------Tsl-esI~~vi~s  201 (510)
                      -|.-|+||||+.+.|.+ ....++..-.++||.|    +-+.|.                       -.+ +.|...+++
T Consensus         6 EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I~p~l~~   85 (209)
T PRK13976          6 EGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVILPALLQ   85 (209)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            69999999999998876 2221121111244544    111110                       122 235666789


Q ss_pred             CCeEEEEeccCCch-------------hHhhhc---CCCc-eEEEEeCCCHHHHHHHHHhcCCCc-HHHHHHHH-HHHHH
Q psy6613         202 LQLVVLDCDTINHP-------------SQLAKT---NLSP-CIVYLKISSPKVLQRLIKSRGKSQ-TRHLNVQM-VAAEK  262 (510)
Q Consensus       202 GKi~ILDID~qg~~-------------lq~lks---~l~P-ivIFIkPPS~e~L~~rLr~Rgt~~-~e~i~kRL-~aa~e  262 (510)
                      |++||.|=-+.++.             +..+..   .+.| ++||+.. +.++..+|++.++-+. ..+-..++ ++=.+
T Consensus        86 G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv-~~e~a~~Ri~~~~~e~~~~~~l~~v~~~Y~~  164 (209)
T PRK13976         86 GKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDI-DIELSLSRADKNGYEFMDLEFYDKVRKGFRE  164 (209)
T ss_pred             CCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeC-CHHHHHHHhcccchhcccHHHHHHHHHHHHH
Confidence            99999995432211             111111   1245 4555555 5677777776554332 23444556 44455


Q ss_pred             HHhcCCCCccEEEeC---CC---HHHHHHHHHHHHHHHH
Q psy6613         263 LAQCPQEMFDVILDE---NQ---LEDACEHIAEYLEAYW  295 (510)
Q Consensus       263 LEq~~~~~FD~VIvN---Dd---Ld~A~~eL~~ileai~  295 (510)
                      +...+++.|..+--+   ++   +++..+++.++|....
T Consensus       165 l~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~  203 (209)
T PRK13976        165 IVIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVT  203 (209)
T ss_pred             HHHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHH
Confidence            655554444444331   24   8888888887776554

>PRK13949 shikimate kinase; Provisional

Probab=96.19  E-value=0.051  Score=51.26  Aligned_cols=20  Identities=15%  Similarity=0.155  Sum_probs=17.4

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|+||||+.+.|-+
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            455 99999999999998876

>PLN02842 nucleotide kinase

Probab=96.15  E-value=0.11  Score=57.57  Aligned_cols=147  Identities=14%  Similarity=0.100  Sum_probs=77.6

Q ss_pred             eEEecCcCChHHHHHHHhcCCCCceeeecCCCch------h----hhhhhc----ccHHHHHH----HHH----cCCeEE
Q psy6613         149 IIITRVTADISLAKRSLMSNPSKRAIMERSNSRS------S----VLTEVQ----TEIERVYE----LAS----TLQLVV  206 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~------p----Fe~~I~----TslesI~~----vi~----sGKi~I  206 (510)
                      +|+||.|+||+|++++|-+......++....-|.      +    ..+.+.    ++-+.+..    -+.    ..+-.|
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~I   80 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWL   80 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence            3589999999999999887222222221111121      0    001111    12122211    111    123477


Q ss_pred             EEeccCCchhHhhh---c-CCCc-eEEEEeCCCHHHHHHHHHhcC-----------------------------CCcHHH
Q psy6613         207 LDCDTINHPSQLAK---T-NLSP-CIVYLKISSPKVLQRLIKSRG-----------------------------KSQTRH  252 (510)
Q Consensus       207 LDID~qg~~lq~lk---s-~l~P-ivIFIkPPS~e~L~~rLr~Rg-----------------------------t~~~e~  252 (510)
                      ||--|..  ....+   . ...| ++||+..|. +++.+|+.+|.                             .++.+.
T Consensus        81 LDGfPRt--~~Qa~~Le~~~~~PDlVI~LDvpd-evlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~  157 (505)
T PLN02842         81 LDGYPRS--FAQAQSLEKLKIRPDIFILLDVPD-EILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEK  157 (505)
T ss_pred             EeCCCCc--HHHHHHHHhcCCCCCEEEEEeCCH-HHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHH
Confidence            7876665  33332   2 2345 566666654 56666665442                             345678


Q ss_pred             HHHHH-H---HHHHHHhcCCCCccEEEeCCCHHHHHHHHHHHHHHHHHhc
Q psy6613         253 LNVQM-V---AAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRAT  298 (510)
Q Consensus       253 i~kRL-~---aa~eLEq~~~~~FD~VIvNDdLd~A~~eL~~ileai~~a~  298 (510)
                      +.+|| .   ....+...|++.+..|=.+.+.++.++++..+|..+....
T Consensus       158 IkkRL~~Y~~~t~pIl~~Y~~rl~~IDAsqs~EeVfeeI~~iL~~~L~~~  207 (505)
T PLN02842        158 VKARLQIYKKNAEAILSTYSDIMVKIDGNRPKEVVFEEISSLLSQIQKDA  207 (505)
T ss_pred             HHHHHHHHHHHhhhHHHhcCcEEEEEECCCCHHHHHHHHHHHHHHHHhhh
Confidence            88998 2   2334455665543221123569999999998887665443

>PRK13948 shikimate kinase; Provisional

Probab=96.12  E-value=0.074  Score=51.18  Aligned_cols=132  Identities=14%  Similarity=0.038  Sum_probs=69.3

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchh---------hhhh----hc-ccHHHHHHHHHcCCeEEEEe------c
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS---------VLTE----VQ-TEIERVYELASTLQLVVLDC------D  210 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p---------Fe~~----I~-TslesI~~vi~sGKi~ILDI------D  210 (510)
                      +|.+|+||||+-+.|-+.- .+.+.-+..-+..         |...    +. -..+.+.+++..+. +|+.+      +
T Consensus        16 iG~~GsGKSTvg~~La~~l-g~~~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~-~VIa~GgG~v~~   93 (182)
T PRK13948         16 AGFMGTGKSRIGWELSRAL-MLHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDY-AVISLGGGTFMH   93 (182)
T ss_pred             ECCCCCCHHHHHHHHHHHc-CCCEEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCC-eEEECCCcEEcC
Confidence            9999999999999887621 1222222221111         1110    00 34445666665543 45553      2


Q ss_pred             cCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcC--CC---cHHHHHHHH-HHHHHHHhcCCCCccEEEeCC--CHHH
Q psy6613         211 TINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRG--KS---QTRHLNVQM-VAAEKLAQCPQEMFDVILDEN--QLED  282 (510)
Q Consensus       211 ~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rg--t~---~~e~i~kRL-~aa~eLEq~~~~~FD~VIvND--dLd~  282 (510)
                      +.+  .+.++.  ...+||+. -+.++|.+|+...+  .-   ...+...++ ++-..+   | ...|++|.++  +.++
T Consensus        94 ~~n--~~~l~~--~g~vV~L~-~~~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~R~~~---Y-~~a~~~i~t~~~~~~e  164 (182)
T PRK13948         94 EEN--RRKLLS--RGPVVVLW-ASPETIYERTRPGDRPLLQVEDPLGRIRTLLNEREPV---Y-RQATIHVSTDGRRSEE  164 (182)
T ss_pred             HHH--HHHHHc--CCeEEEEE-CCHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHHH---H-HhCCEEEECCCCCHHH
Confidence            222  233332  35688888 45789999985432  11   111112222 322222   3 2368899765  4778


Q ss_pred             HHHHHHHHHHH
Q psy6613         283 ACEHIAEYLEA  293 (510)
Q Consensus       283 A~~eL~~ilea  293 (510)
                      .++++.+.+..
T Consensus       165 i~~~i~~~l~~  175 (182)
T PRK13948        165 VVEEIVEKLWA  175 (182)
T ss_pred             HHHHHHHHHHH
Confidence            88887755544

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=96.03  E-value=0.064  Score=50.45  Aligned_cols=21  Identities=24%  Similarity=0.107  Sum_probs=17.9

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      +.+|  .|+.|+||||+.++|.+
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~   25 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKK   25 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            4444  89999999999999887

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PLN02459 probable adenylate kinase

Probab=95.98  E-value=0.099  Score=53.39  Aligned_cols=141  Identities=10%  Similarity=0.025  Sum_probs=77.4

Q ss_pred             CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh----------hhhhhc--------ccHHHHHHHHHc-----CC
Q psy6613         148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS----------VLTEVQ--------TEIERVYELAST-----LQ  203 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p----------Fe~~I~--------TslesI~~vi~s-----GK  203 (510)
                      ++| +||+|+||+|+..+|.+....-.++....-|.-          ....+.        .-..-|.+-+.+     .+
T Consensus        31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~~~~  110 (261)
T PLN02459         31 NWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEEGES  110 (261)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCc
Confidence            344 999999999999999872222222222222221          111111        222333333332     36


Q ss_pred             eEEEEeccCCchhHhhhc--C-CC-ceEEEEeCCCHHHHHHHHHhc----------------------------------
Q psy6613         204 LVVLDCDTINHPSQLAKT--N-LS-PCIVYLKISSPKVLQRLIKSR----------------------------------  245 (510)
Q Consensus       204 i~ILDID~qg~~lq~lks--~-l~-PivIFIkPPS~e~L~~rLr~R----------------------------------  245 (510)
                      -.|||-=|..  ..+.+.  . .. -.+|++..| -++|.+|+.+|                                  
T Consensus       111 g~iLDGFPRt--~~Qa~~Le~~~~id~Vi~L~v~-d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~~~  187 (261)
T PLN02459        111 GFILDGFPRT--VRQAEILEGVTDIDLVVNLKLR-EEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPP  187 (261)
T ss_pred             eEEEeCCCCC--HHHHHHHHhcCCCCEEEEEECC-HHHHHHHhhccccccccCccccccccccccccccccccCCCCCCC
Confidence            6899998877  554443  2 22 357777777 46677776654                                  


Q ss_pred             ----------CCCcHHHHHHHH----HHHHHHHhcCCCCccEEE--eCCCHHHHHHHHHHHH
Q psy6613         246 ----------GKSQTRHLNVQM----VAAEKLAQCPQEMFDVIL--DENQLEDACEHIAEYL  291 (510)
Q Consensus       246 ----------gt~~~e~i~kRL----~aa~eLEq~~~~~FD~VI--vNDdLd~A~~eL~~il  291 (510)
                                ..++.+.+.+||    +....+...|.+.-=++.  .+.++++.+++|..+|
T Consensus       188 ~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l  249 (261)
T PLN02459        188 PECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQAL  249 (261)
T ss_pred             cccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHh
Confidence                      234457788888    222334444433211222  3457888888888443

>PRK12338 hypothetical protein; Provisional

Probab=95.97  E-value=0.1  Score=54.65  Aligned_cols=95  Identities=9%  Similarity=0.154  Sum_probs=54.2

Q ss_pred             HHHHHcCCeEEEEeccCCchhHhhh-c---CCCceEEEEeCCCHHHHHHHHHhcCCCcHH--HH---HHHH--HHHHHHH
Q psy6613         196 YELASTLQLVVLDCDTINHPSQLAK-T---NLSPCIVYLKISSPKVLQRLIKSRGKSQTR--HL---NVQM--VAAEKLA  264 (510)
Q Consensus       196 ~~vi~sGKi~ILDID~qg~~lq~lk-s---~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e--~i---~kRL--~aa~eLE  264 (510)
                      ...++.|..+|++--.-- | ..++ .   .-.++..|+.-|+.+..++|...|......  .-   ...+  -...-++
T Consensus        99 ~r~~~~g~svIiEGvhl~-P-~~i~~~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~r~~~~l~~f~~Ir~Iq~~l~~  176 (319)
T PRK12338         99 ERAVTDSDDIVIEGVHLV-P-GLIDIEQFEENASIHFFILSADEEVHKERFVKRAMEIKRGGKQLEYFRENRIIHDHLVE  176 (319)
T ss_pred             HHHhcCCCeEEEEecccc-H-HHHhhhhhcccCceEEEEEECCHHHHHHHHHHhhhccCCchhhhhChHHHHHHHHHHHH
Confidence            334568989999865432 1 2222 1   112455555568999999998885532210  00   1111  1111122


Q ss_pred             hcCCCCccEE-EeCCCHHHHHHHHHHHHHHH
Q psy6613         265 QCPQEMFDVI-LDENQLEDACEHIAEYLEAY  294 (510)
Q Consensus       265 q~~~~~FD~V-IvNDdLd~A~~eL~~ileai  294 (510)
                      +  ...++.. |.|+|+|+|++++.++|..+
T Consensus       177 ~--A~e~~VpvI~N~did~Tv~~ile~I~e~  205 (319)
T PRK12338        177 Q--AREHNVPVIKNDDIDCTVKKMLSYIREV  205 (319)
T ss_pred             h--HhhCCCceeCCCcHHHHHHHHHHHHHhh
Confidence            2  2455666 68999999999999887644

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=95.94  E-value=0.12  Score=45.65  Aligned_cols=121  Identities=14%  Similarity=0.037  Sum_probs=58.9

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchhhhhh---------hc-ccHHHHHHHHHcCCeEEEEeccCCchhHhh
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSSVLTE---------VQ-TEIERVYELASTLQLVVLDCDTINHPSQLA  219 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~pFe~~---------I~-TslesI~~vi~sGKi~ILDID~qg~~lq~l  219 (510)
                      +|++|+||||+.+.|.. ..-.|. ....-....+...         +. .....+.++.. +..||+|...-+  . .+
T Consensus         5 ~G~~GsGKst~a~~la~~~~~~~~-~~~~i~~e~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~Vidg~~~~--~-~~   79 (147)
T cd02020           5 DGPAGSGKSTVAKLLAKKLGLPYL-DTGGIRTEEVGKLASEVAAIPEVRKALDERQRELAK-KPGIVLEGRDIG--T-VV   79 (147)
T ss_pred             ECCCCCCHHHHHHHHHHHhCCcee-ccccCCHHHHHHHHHHhcccHhHHHHHHHHHHHHhh-CCCEEEEeeeee--e-EE
Confidence            89999999999999987 321111 1111111111110         01 11122333333 456888865433  1 11


Q ss_pred             hcCCCceEEEEeCCCHHHHHHHHH---h-cCCCcHHHHHHHHHHHHHHH-hcC-----CCCccEEEeC
Q psy6613         220 KTNLSPCIVYLKISSPKVLQRLIK---S-RGKSQTRHLNVQMVAAEKLA-QCP-----QEMFDVILDE  277 (510)
Q Consensus       220 ks~l~PivIFIkPPS~e~L~~rLr---~-Rgt~~~e~i~kRL~aa~eLE-q~~-----~~~FD~VIvN  277 (510)
                       ....-++|||..|-...++++.+   . +...+.+++.+++....+-+ ..|     ...||.+|..
T Consensus        80 -~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dl~i~~  146 (147)
T cd02020          80 -FPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPLKLAEDAIVIDT  146 (147)
T ss_pred             -cCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccccCCCCcEEEeC
Confidence             12234678888775555454444   1 33345667777773333221 222     3456666643

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=95.93  E-value=0.061  Score=51.63  Aligned_cols=138  Identities=17%  Similarity=0.145  Sum_probs=75.2

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-CCCC-ceeeecCC---Cchh--------------------hhhhhcccHHHHHHHH
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-NPSK-RAIMERSN---SRSS--------------------VLTEVQTEIERVYELA  199 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~-F~~sVshT---TR~p--------------------Fe~~I~TslesI~~vi  199 (510)
                      +++|  =|+|.+|||||.+.|.+ .+.- +.+++-+=   ..+.                    |...+..-...|...+
T Consensus         1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a   80 (174)
T PF07931_consen    1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMA   80 (174)
T ss_dssp             --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHH
Confidence            3555  59999999999999988 6654 44443210   1111                    1111125567888899


Q ss_pred             HcCCeEEEEeccCCch--hHhhhc---CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-hcCCCCccE
Q psy6613         200 STLQLVVLDCDTINHP--SQLAKT---NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLA-QCPQEMFDV  273 (510)
Q Consensus       200 ~sGKi~ILDID~qg~~--lq~lks---~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLE-q~~~~~FD~  273 (510)
                      +.|..||+|-=..+-.  .+.++.   .+..++|=|.+| .++|++|-+.||.-..-      .+....+ -+.+..||+
T Consensus        81 ~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cp-leil~~RE~~RgDR~~G------~a~~q~~~Vh~~~~YDl  153 (174)
T PF07931_consen   81 RAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCP-LEILERRERARGDRPIG------LAAWQAEHVHEGGRYDL  153 (174)
T ss_dssp             HTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE---HHHHHHHHHHHTSSSTT------HHHHHTTGGGTT---SE
T ss_pred             hCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECC-HHHHHHHHHhcCCcchH------HHHHHHhhcccCCCCCE
Confidence            9999999993322211  234433   445566777776 88999999998852111      2222223 233567999


Q ss_pred             EEeC--CCHHHHHHHHHHHH
Q psy6613         274 ILDE--NQLEDACEHIAEYL  291 (510)
Q Consensus       274 VIvN--DdLd~A~~eL~~il  291 (510)
                      .|..  .+.++|.+++.+.+
T Consensus       154 eVDTs~~sp~ecA~~I~~~~  173 (174)
T PF07931_consen  154 EVDTSATSPEECAREILARL  173 (174)
T ss_dssp             EEETTSS-HHHHHHHHHTT-
T ss_pred             EEECCCCCHHHHHHHHHHHh
Confidence            9975  45777777776443

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PRK06696 uridine kinase; Validated

Probab=95.90  E-value=0.023  Score=55.50  Aligned_cols=17  Identities=6%  Similarity=-0.128  Sum_probs=16.0

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      .|++|+||||+.++|.+
T Consensus        28 ~G~sgsGKSTlA~~L~~   44 (223)
T PRK06696         28 DGITASGKTTFADELAE   44 (223)
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            89999999999999887

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=95.87  E-value=0.011  Score=50.79  Aligned_cols=98  Identities=14%  Similarity=0.152  Sum_probs=51.2

Q ss_pred             EEecCcCChHHHHHHHhcCCC----------CceeeecCC---Cchh-hhhhhc-ccHHHHHH---HHHcCCeEEEEecc
Q psy6613         150 IITRVTADISLAKRSLMSNPS----------KRAIMERSN---SRSS-VLTEVQ-TEIERVYE---LASTLQLVVLDCDT  211 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~~P~----------~F~~sVshT---TR~p-Fe~~I~-TslesI~~---vi~sGKi~ILDID~  211 (510)
                      |.|++|+|||||.+.|.+.-.          .+.....+.   .... +..+.. .-+..+.+   ....+..+|+|-..
T Consensus         3 i~G~~GsGKtTia~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~   82 (129)
T PF13238_consen    3 ISGIPGSGKTTIAKELAERLGDIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKGRNIIIDGIL   82 (129)
T ss_dssp             EEESTTSSHHHHHHHHHHHHCHHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTSCEEEEESS
T ss_pred             EECCCCCCHHHHHHHHHHHHCcHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccCCcEEEeccc
Confidence            389999999999998877210          001111110   0000 000000 12222222   35678999999876


Q ss_pred             CCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHH
Q psy6613         212 INHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTR  251 (510)
Q Consensus       212 qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e  251 (510)
                      ..  ........... |||..|. +++.+|+..|+.....
T Consensus        83 ~~--~~~~~~~~~~~-i~L~~~~-e~~~~R~~~R~~~~~~  118 (129)
T PF13238_consen   83 SN--LELERLFDIKF-IFLDCSP-EELRKRLKKRGRKEEK  118 (129)
T ss_dssp             EE--ECETTEEEESS-EEEE--H-HHHHHHHHCTTTSCHH
T ss_pred             ch--hcccccceeeE-EEEECCH-HHHHHHHHhCCCCCCC
Confidence            44  11111111111 8888876 9999999999877643

...

>PLN02674 adenylate kinase

Probab=95.74  E-value=0.15  Score=51.43  Aligned_cols=142  Identities=11%  Similarity=0.083  Sum_probs=75.4

Q ss_pred             CCeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh----------hhhhhc--------ccHHHHHHHHHc---CCe
Q psy6613         147 GMII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS----------VLTEVQ--------TEIERVYELAST---LQL  204 (510)
Q Consensus       147 ~RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p----------Fe~~I~--------TslesI~~vi~s---GKi  204 (510)
                      .+++ +||+|+||+|+.++|.++..-..++.-..=|.-          ..+.+.        .-.+-|.+.+.+   ++-
T Consensus        32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~g  111 (244)
T PLN02674         32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG  111 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCcCCc
Confidence            4566 999999999999999873222222211111111          001111        222334444433   466


Q ss_pred             EEEEeccCCchhHhhhc--------CCCc-eEEEEeCCCHHHHHHHHHhc------------------------------
Q psy6613         205 VVLDCDTINHPSQLAKT--------NLSP-CIVYLKISSPKVLQRLIKSR------------------------------  245 (510)
Q Consensus       205 ~ILDID~qg~~lq~lks--------~l~P-ivIFIkPPS~e~L~~rLr~R------------------------------  245 (510)
                      .|||-=|..  ....+.        ...+ .+||+..| -+++.+|+.+|                              
T Consensus       112 ~ilDGfPRt--~~Qa~~l~~~l~~~~~~~d~vi~l~v~-~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L  188 (244)
T PLN02674        112 FILDGFPRT--VVQAQKLDEMLAKQGAKIDKVLNFAID-DAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL  188 (244)
T ss_pred             EEEeCCCCC--HHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhccccccccCCccccccCCCcccCcccccCCcc
Confidence            899988866  333331        2333 46777765 56777777665                              


Q ss_pred             ---CCCcHHHHHHHH-H---HHHHHHhcCCC--CccEEEeCCCHHHHHHHHHHHH
Q psy6613         246 ---GKSQTRHLNVQM-V---AAEKLAQCPQE--MFDVILDENQLEDACEHIAEYL  291 (510)
Q Consensus       246 ---gt~~~e~i~kRL-~---aa~eLEq~~~~--~FD~VIvNDdLd~A~~eL~~il  291 (510)
                         ..++.+.+.+|| .   ....+...|..  .+-.|=.+.+.++.++++..+|
T Consensus       189 ~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l  243 (244)
T PLN02674        189 IQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL  243 (244)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence               223467788888 2   22234444432  2211113457888888877443

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=95.68  E-value=0.15  Score=52.66  Aligned_cols=125  Identities=22%  Similarity=0.197  Sum_probs=60.9

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchhhhhhhcccHHHHHHHHHc-----CCeEEEEeccCCc------hhHhh
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELAST-----LQLVVLDCDTINH------PSQLA  219 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~pFe~~I~TslesI~~vi~s-----GKi~ILDID~qg~------~lq~l  219 (510)
                      +|++|+||||+.+.|-..  .| +++ ......       .+..+.+.+.+     .-.+++|+-..+.      .+..+
T Consensus        12 ~G~~GsGKtt~~~~l~~~--g~-~~~-d~~~~~-------L~~~l~~~~~~~~~~~~~av~iD~r~~~~~~~~~~~~~~L   80 (288)
T PRK05416         12 TGLSGAGKSVALRALEDL--GY-YCV-DNLPPS-------LLPKLVELLAQSGGIRKVAVVIDVRSRPFFDDLPEALDEL   80 (288)
T ss_pred             ECCCCCcHHHHHHHHHHc--CC-eEE-CCcCHH-------HHHHHHHHHHhcCCCCCeEEEEccCchhhHHHHHHHHHHH
Confidence            899999999999988532  12 122 221111       11222222222     2356666642220      12222


Q ss_pred             hc-CCCceEEEEeCCCHHHHHHHHHhcC----CCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCCC--HHHHHHHHH
Q psy6613         220 KT-NLSPCIVYLKISSPKVLQRLIKSRG----KSQTRHLNVQM-VAAEKLAQCPQEMFDVILDENQ--LEDACEHIA  288 (510)
Q Consensus       220 ks-~l~PivIFIkPPS~e~L~~rLr~Rg----t~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvNDd--Ld~A~~eL~  288 (510)
                      +. .....+||+..+ .++|.+|+..+.    ..........+ ...+.++.. ....|++|.+++  .++..+++.
T Consensus        81 ~~~g~~~~iI~L~a~-~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl-~~~ADivIDTs~ls~~el~e~I~  155 (288)
T PRK05416         81 RERGIDVRVLFLDAS-DEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAPL-RERADLVIDTSELSVHQLRERIR  155 (288)
T ss_pred             HHcCCcEEEEEEECC-HHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhhH-HHhCCEEEECCCCCHHHHHHHHH
Confidence            33 344566888774 688888876421    11112222223 222222211 234689998765  555555555

>PRK00889 adenylylsulfate kinase; Provisional

Probab=95.54  E-value=0.074  Score=49.53  Aligned_cols=137  Identities=12%  Similarity=0.047  Sum_probs=65.1

Q ss_pred             EecCcCChHHHHHHHhc-C-CCCceee-ecC-CCchhhhh-------hhcccH---HHHHH-HHHcCCeEEEEeccCC-c
Q psy6613         151 ITRVTADISLAKRSLMS-N-PSKRAIM-ERS-NSRSSVLT-------EVQTEI---ERVYE-LASTLQLVVLDCDTIN-H  214 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~-P~~F~~s-Vsh-TTR~pFe~-------~I~Tsl---esI~~-vi~sGKi~ILDID~qg-~  214 (510)
                      +|++|+||||+.+.|.. . +...... +.. +-|..+..       +....+   ..+.. +...|.+|++|.-... .
T Consensus        10 ~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~~~~~~~a~~~~~~g~~vi~~~~~~~~~   89 (175)
T PRK00889         10 TGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRRIGFVANLLTRHGVIVLVSAISPYRE   89 (175)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCHH
Confidence            89999999999998876 2 2222222 221 11222110       000111   11222 3456998888864211 0


Q ss_pred             hhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCc---HHHHHHHHHHHHHHHhcC-CCCccEEEeC--CCHHHHHHHH
Q psy6613         215 PSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQ---TRHLNVQMVAAEKLAQCP-QEMFDVILDE--NQLEDACEHI  287 (510)
Q Consensus       215 ~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~---~e~i~kRL~aa~eLEq~~-~~~FD~VIvN--DdLd~A~~eL  287 (510)
                      ..+.++. .-..++|||..| .+++.+|. .++...   .+++...+..   -...| +..-|++|..  .+++++++++
T Consensus        90 ~~~~l~~~~~~~~~v~l~~~-~e~~~~R~-~~~l~~~~~~~~i~~~~~~---~~~~~~p~~ad~~i~~~~~~~~~~~~~i  164 (175)
T PRK00889         90 TREEVRANIGNFLEVFVDAP-LEVCEQRD-VKGLYAKARAGEIKHFTGI---DDPYEPPLNPEVECRTDLESLEESVDKV  164 (175)
T ss_pred             HHHHHHhhcCCeEEEEEcCC-HHHHHHhC-cccHHHHHHcCCCCCCccc---CCCCCCCCCCcEEEECCCCCHHHHHHHH
Confidence            0122222 223467888887 66777663 111000   0000000100   01223 2445777754  3588888888


Q ss_pred             HHHHH
Q psy6613         288 AEYLE  292 (510)
Q Consensus       288 ~~ile  292 (510)
                      .++|+
T Consensus       165 ~~~l~  169 (175)
T PRK00889        165 LQKLE  169 (175)
T ss_pred             HHHHH
Confidence            86664

>PRK08118 topology modulation protein; Reviewed

Probab=95.47  E-value=0.062  Score=50.58  Aligned_cols=83  Identities=18%  Similarity=0.093  Sum_probs=44.4

Q ss_pred             CeE-EecCcCChHHHHHHHhc-C-CCCceee-e---c-CCCchhhhhhhcccHHHHHHHHHcCCeEEEEeccCCchhHhh
Q psy6613         148 MII-ITRVTADISLAKRSLMS-N-PSKRAIM-E---R-SNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTINHPSQLA  219 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~-~-P~~F~~s-V---s-hTTR~pFe~~I~TslesI~~vi~sGKi~ILDID~qg~~lq~l  219 (510)
                      |++ +||+|+||||+.++|-+ . ...+.+- +   + .+.++.  +   .....+.+++ ++...|+|-...+  ..-.
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~--~---~~~~~~~~~~-~~~~wVidG~~~~--~~~~   74 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPK--E---EQITVQNELV-KEDEWIIDGNYGG--TMDI   74 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCH--H---HHHHHHHHHh-cCCCEEEeCCcch--HHHH
Confidence            565 99999999999999887 2 1111110 0   0 111111  0   1112233344 3456888876654  1111


Q ss_pred             hcCCCceEEEEeCCCHHHH
Q psy6613         220 KTNLSPCIVYLKISSPKVL  238 (510)
Q Consensus       220 ks~l~PivIFIkPPS~e~L  238 (510)
                      +....-.+||+.+|-...+
T Consensus        75 ~l~~~d~vi~Ld~p~~~~~   93 (167)
T PRK08118         75 RLNAADTIIFLDIPRTICL   93 (167)
T ss_pred             HHHhCCEEEEEeCCHHHHH
Confidence            2233557899999865333

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=95.46  E-value=0.28  Score=53.95  Aligned_cols=97  Identities=12%  Similarity=0.126  Sum_probs=58.7

Q ss_pred             HHHHHHcCCeEEEEeccCCchhHhhh-c---CCCceEEEEeCCCHHHHHHHHHhcCCCcH-----HHH---HHHH--HHH
Q psy6613         195 VYELASTLQLVVLDCDTINHPSQLAK-T---NLSPCIVYLKISSPKVLQRLIKSRGKSQT-----RHL---NVQM--VAA  260 (510)
Q Consensus       195 I~~vi~sGKi~ILDID~qg~~lq~lk-s---~l~PivIFIkPPS~e~L~~rLr~Rgt~~~-----e~i---~kRL--~aa  260 (510)
                      |.+.+..|..+|+|.-.-- | ..+. .   ...-+.++|..++.++.++|...|+....     +.-   +..+  -+.
T Consensus       352 I~r~l~eG~SvIIEGVHl~-P-~~i~~~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~~~~~~r~~~ky~~~f~~IR~IQd  429 (475)
T PRK12337        352 QERSAQEGTSLVLEGVHLV-P-GYLRHPYQAGALVVPMLVTLPDEALHRRRFELRDRETGASRPRERYLRHFEEIRLIQD  429 (475)
T ss_pred             HHHHHHcCCeEEEECCCCC-H-HHHHHHHhcCCceEEEEEEECCHHHHHHHHHHHhhhccCCCchhHHHHhHHHHHHHHH
Confidence            4667889999999986543 2 2222 1   22334468888999999999988765441     111   1112  112


Q ss_pred             HHHHhcCCCCccEEEeCCCHHHHHHHHHHHHHHH
Q psy6613         261 EKLAQCPQEMFDVILDENQLEDACEHIAEYLEAY  294 (510)
Q Consensus       261 ~eLEq~~~~~FD~VIvNDdLd~A~~eL~~ileai  294 (510)
                      .-+++...+.. -||.|.|+|++.+.+.+.|-..
T Consensus       430 yLv~~A~~~~i-pvI~n~nid~tv~~~l~~i~~~  462 (475)
T PRK12337        430 HLLRLARQEGV-PVLPGEDLDESIDKALEVVLRR  462 (475)
T ss_pred             HHHHHHHHcCC-CeecCccHHHHHHHHHHHHHHH
Confidence            22333322222 3568999999999988766443

>PRK07261 topology modulation protein; Provisional

Probab=95.44  E-value=0.035  Score=52.34  Aligned_cols=90  Identities=14%  Similarity=0.040  Sum_probs=50.1

Q ss_pred             CeE-EecCcCChHHHHHHHhc-C-CCCceee-ecCC---CchhhhhhhcccHHHHHHHHHcCCeEEEEeccCCchhHhhh
Q psy6613         148 MII-ITRVTADISLAKRSLMS-N-PSKRAIM-ERSN---SRSSVLTEVQTEIERVYELASTLQLVVLDCDTINHPSQLAK  220 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~-~-P~~F~~s-VshT---TR~pFe~~I~TslesI~~vi~sGKi~ILDID~qg~~lq~lk  220 (510)
                      |++ +|++|+|||||.+.|.. . ...+..- +.+.   +..+    ...-+..+.+++.++. .|+|-.... ...-..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-wIidg~~~~-~~~~~~   75 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERD----DDDMIADISNFLLKHD-WIIDGNYSW-CLYEER   75 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCC----HHHHHHHHHHHHhCCC-EEEcCcchh-hhHHHH
Confidence            454 99999999999999876 2 1111100 0000   1111    0123455666777777 888887643 111111


Q ss_pred             cCCCceEEEEeCCCHHHHHHHHH
Q psy6613         221 TNLSPCIVYLKISSPKVLQRLIK  243 (510)
Q Consensus       221 s~l~PivIFIkPPS~e~L~~rLr  243 (510)
                      ....-.+||+.+|-...+.+.++
T Consensus        76 l~~ad~vI~Ld~p~~~~~~R~lk   98 (171)
T PRK07261         76 MQEADQIIFLNFSRFNCLYRAFK   98 (171)
T ss_pred             HHHCCEEEEEcCCHHHHHHHHHH
Confidence            12345689999996655554443

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=95.41  E-value=0.23  Score=47.23  Aligned_cols=17  Identities=12%  Similarity=0.077  Sum_probs=15.9

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+||||+.+.|..
T Consensus         9 ~G~sGsGKSTl~~~la~   25 (176)
T PRK09825          9 MGVSGSGKSLIGSKIAA   25 (176)
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            99999999999998876

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=95.34  E-value=0.34  Score=45.65  Aligned_cols=97  Identities=19%  Similarity=0.206  Sum_probs=53.4

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCC---Cchh----hhhh-----------hc-ccHHHHHHHHH---cCCeEEEE
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSN---SRSS----VLTE-----------VQ-TEIERVYELAS---TLQLVVLD  208 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshT---TR~p----Fe~~-----------I~-TslesI~~vi~---sGKi~ILD  208 (510)
                      .|+.|+||||+.+.|-++.....+..|..   ...+    |..+           +. +..+.+.+++.   +|++||+|
T Consensus         5 eG~~GsGKSTl~~~L~~~~~~~~~~Ep~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~~~~~~~vI~D   84 (193)
T cd01673           5 EGNIGAGKSTLAKELAEHLGYEVVPEPVEPDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEHLSTGQGVILE   84 (193)
T ss_pred             ECCCCCCHHHHHHHHHHHhCCccccccccccCCCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhhcccCCceEEE
Confidence            79999999999998876332222222210   0111    1111           11 34444555544   89999999


Q ss_pred             eccCCch----------------h----Hhhhc----CCCceEEEEeCCCHHHHHHHHHhcCC
Q psy6613         209 CDTINHP----------------S----QLAKT----NLSPCIVYLKISSPKVLQRLIKSRGK  247 (510)
Q Consensus       209 ID~qg~~----------------l----q~lks----~l~PivIFIkPPS~e~L~~rLr~Rgt  247 (510)
                      =.+..+.                .    ++...    ...|-.+|..--+.++..+|++.|+.
T Consensus        85 R~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~r  147 (193)
T cd01673          85 RSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRGR  147 (193)
T ss_pred             cChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcCc
Confidence            6443211                0    01111    13465555555578888999988875

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK00625 shikimate kinase; Provisional

Probab=95.30  E-value=0.03  Score=53.35  Aligned_cols=92  Identities=11%  Similarity=-0.005  Sum_probs=47.7

Q ss_pred             EecCcCChHHHHHHHhcCCCCcee-eecC-----CCc----hh---hhhhh----c-ccHHHHHHHHHcCCeEEEEeccC
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAI-MERS-----NSR----SS---VLTEV----Q-TEIERVYELASTLQLVVLDCDTI  212 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~-sVsh-----TTR----~p---Fe~~I----~-TslesI~~vi~sGKi~ILDID~q  212 (510)
                      +|.+|+||||+.+.|-++-+ +.+ ...+     +-.    ..   |...-    . ...+.++++.. + .+|+.+..-
T Consensus         6 iG~pGsGKTT~~k~La~~l~-~~~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~-~-~~VIs~GGg   82 (173)
T PRK00625          6 CGLPTVGKTSFGKALAKFLS-LPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPV-I-PSIVALGGG   82 (173)
T ss_pred             ECCCCCCHHHHHHHHHHHhC-CCEEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhcc-C-CeEEECCCC
Confidence            99999999999998866221 111 1110     111    11   22110    0 23344555443 3 334444311


Q ss_pred             C----chhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCC
Q psy6613         213 N----HPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKS  248 (510)
Q Consensus       213 g----~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~  248 (510)
                      .    ...+.++  -..++||+..| .+++.+|+..|+..
T Consensus        83 ~~~~~e~~~~l~--~~~~Vv~L~~~-~e~l~~Rl~~R~~~  119 (173)
T PRK00625         83 TLMIEPSYAHIR--NRGLLVLLSLP-IATIYQRLQKRGLP  119 (173)
T ss_pred             ccCCHHHHHHHh--cCCEEEEEECC-HHHHHHHHhcCCCC
Confidence            1    0022222  24678888876 88999999888653

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=95.25  E-value=0.19  Score=52.41  Aligned_cols=98  Identities=11%  Similarity=0.127  Sum_probs=60.4

Q ss_pred             HHHHHHHHcCCeEEEEeccCCchhHhhhc----CCCceEEEEeCCCHHHHHHHHHhcCCCcH---H---HHHHHH--HHH
Q psy6613         193 ERVYELASTLQLVVLDCDTINHPSQLAKT----NLSPCIVYLKISSPKVLQRLIKSRGKSQT---R---HLNVQM--VAA  260 (510)
Q Consensus       193 esI~~vi~sGKi~ILDID~qg~~lq~lks----~l~PivIFIkPPS~e~L~~rLr~Rgt~~~---e---~i~kRL--~aa  260 (510)
                      .-|.+.+++|+.+|++--..-  -..++.    ...-+.+++...+.+..+.|...|+....   +   .-..++  ...
T Consensus       181 ~~I~~~~~~g~s~IiEGvhl~--P~~i~~~~~~~~~~i~~~l~i~~ee~h~~RF~~R~~~~~r~~~~y~~~~~~ir~iq~  258 (301)
T PRK04220        181 AVIERALKEGISVIIEGVHIV--PGFIKEKYLENPNVFMFVLTLSDEEAHKARFYARARVSRRPAERYLKNFEIIREIND  258 (301)
T ss_pred             HHHHHHHHhCCcEEEecCCCC--HHHHHHhhhcCCCEEEEEEEECCHHHHHHHHHHHHhhhCCchhhHHHHHHHHHHHHH
Confidence            346677889999999865543  233332    33445566677899999988766543221   1   112223  223


Q ss_pred             HHHHhcCCCCccEEEeCCCHHHHHHHHHHHHHH
Q psy6613         261 EKLAQCPQEMFDVILDENQLEDACEHIAEYLEA  293 (510)
Q Consensus       261 ~eLEq~~~~~FD~VIvNDdLd~A~~eL~~ilea  293 (510)
                      .-++++-.+.+.+ |.|.|+|++.+.+.++|..
T Consensus       259 ~l~~~a~~~~ip~-I~n~~i~~s~~~~~~~i~~  290 (301)
T PRK04220        259 YIVEKAKKHGVPV-IENISIEETVDKILEIITE  290 (301)
T ss_pred             HHHHHHHHhCCCe-ecCccHHHHHHHHHHHHHH
Confidence            3344444455555 7899999999998877643

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=95.23  E-value=0.19  Score=45.35  Aligned_cols=93  Identities=15%  Similarity=0.152  Sum_probs=51.1

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchh-----hh-------h----hhcccHHHHH-HHHHcCCeEEEEeccCC
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS-----VL-------T----EVQTEIERVY-ELASTLQLVVLDCDTIN  213 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p-----Fe-------~----~I~TslesI~-~vi~sGKi~ILDID~qg  213 (510)
                      +|++|+||||+.+.|.+..+. .+.-..+=|..     +.       .    .+..-.+... .+...|..||+|...-.
T Consensus         5 ~G~~GsGKST~a~~l~~~~~~-~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vVid~~~~~   83 (150)
T cd02021           5 MGVSGSGKSTVGKALAERLGA-PFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGVVVACSALK   83 (150)
T ss_pred             EcCCCCCHHHHHHHHHhhcCC-EEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCEEEEecccc
Confidence            899999999999988773321 11111112221     00       0    0001111222 23358999999987643


Q ss_pred             chhHhhhc--CC----CceEEEEeCCCHHHHHHHHHhcCC
Q psy6613         214 HPSQLAKT--NL----SPCIVYLKISSPKVLQRLIKSRGK  247 (510)
Q Consensus       214 ~~lq~lks--~l----~PivIFIkPPS~e~L~~rLr~Rgt  247 (510)
                        ......  .+    ...+|++..| .+++++|++.|..
T Consensus        84 --~~~r~~~~~~~~~~~~~~v~l~~~-~~~~~~R~~~R~~  120 (150)
T cd02021          84 --RIYRDILRGGAANPRVRFVHLDGP-REVLAERLAARKG  120 (150)
T ss_pred             --HHHHHHHHhcCCCCCEEEEEEECC-HHHHHHHHHhccc
Confidence              222211  22    3456777775 7788999988853

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=95.14  E-value=0.035  Score=57.30  Aligned_cols=62  Identities=11%  Similarity=0.030  Sum_probs=46.0

Q ss_pred             EEecCcCChHHHHHHHhc-CCCC--------ceeeecCCCchhhhhhh-----------------------cccHHHHHH
Q psy6613         150 IITRVTADISLAKRSLMS-NPSK--------RAIMERSNSRSSVLTEV-----------------------QTEIERVYE  197 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~-~P~~--------F~~sVshTTR~pFe~~I-----------------------~TslesI~~  197 (510)
                      |+||+|+|||+|..+|.+ ++..        +....+.+|++|-.++.                       .+..+.|.+
T Consensus         4 i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~a~~~i~~   83 (287)
T TIGR00174         4 IMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTLALNAIAD   83 (287)
T ss_pred             EECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHHHHHHHHH
Confidence            399999999999999988 5432        33345889998822111                       168888999


Q ss_pred             HHHcCCeEEEEecc
Q psy6613         198 LASTLQLVVLDCDT  211 (510)
Q Consensus       198 vi~sGKi~ILDID~  211 (510)
                      +.+.|+++||---.
T Consensus        84 ~~~~g~~pi~vGGT   97 (287)
T TIGR00174        84 ITARGKIPLLVGGT   97 (287)
T ss_pred             HHhCCCCEEEEcCc
Confidence            99999999995543

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>KOG4278|consensus

Probab=95.12  E-value=0.032  Score=62.92  Aligned_cols=84  Identities=19%  Similarity=0.267  Sum_probs=59.5

Q ss_pred             CcCC-CCccchhhhHHHhHHHHHHHHHHHhh-hccCCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEee-cCC
Q psy6613          11 SQPS-SDLSLDEEKETLRREKERQALSQLEK-ARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK-YDS   87 (510)
Q Consensus        11 ~~~~-~d~~~~~~~~~~~~~~~~~a~~~L~~-a~~k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~-~d~   87 (510)
                      +||. .|+--..+-|+.|    -...+-|-. +....+.+|| |||||.+.-|.       .|+..+||-|+|+.. .|+
T Consensus        57 ~RP~~~dfePq~lsea~R----wsSkEnLla~~sendpNLFV-ALYDFvasGdn-------tLSitKGeklRvLGYN~Ng  124 (1157)
T KOG4278|consen   57 HRPYGCDFEPQSLSEAIR----WSSKENLLACSSENDPNLFV-ALYDFVASGDN-------TLSITKGEKLRVLGYNKNG  124 (1157)
T ss_pred             cCccccccCcchhHHHHh----ccchhhhhcccccCCCceeE-eeeeeeccccc-------eeeeecCceEEEeeecCCC
Confidence            3666 5555545556666    445555655 3333456666 99999999885       699999999999997 466


Q ss_pred             CceEEEEccCCCceeeecChhH
Q psy6613          88 NWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        88 ~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .|-.||-   .+..|++||+.-
T Consensus       125 EWcEart---KNGqGWVPSNyI  143 (1157)
T KOG4278|consen  125 EWCEART---KNGQGWVPSNYI  143 (1157)
T ss_pred             cceeecc---cCCCcccccccc
Confidence            7888885   234499998764

>PTZ00088 adenylate kinase 1; Provisional

Probab=95.12  E-value=0.38  Score=47.92  Aligned_cols=20  Identities=10%  Similarity=-0.032  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +||+|+||+|+.++|.+
T Consensus         8 rIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          8 KIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            455 99999999999999887

>PRK06217 hypothetical protein; Validated

Probab=95.05  E-value=0.11  Score=48.96  Aligned_cols=89  Identities=12%  Similarity=0.076  Sum_probs=47.9

Q ss_pred             CeE-EecCcCChHHHHHHHhc-CCC------CceeeecC---CCchhhhhhhcccHHHHHHHHHcCCeEEEEeccCCchh
Q psy6613         148 MII-ITRVTADISLAKRSLMS-NPS------KRAIMERS---NSRSSVLTEVQTEIERVYELASTLQLVVLDCDTINHPS  216 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~-~P~------~F~~sVsh---TTR~pFe~~I~TslesI~~vi~sGKi~ILDID~qg~~l  216 (510)
                      +|+ +|++|+||||+.++|-+ ..-      .+......   .++.+.+    .....+.+.+..+..+|+|--+    .
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~vi~G~~----~   74 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPPFTTKRPPE----ERLRLLLEDLRPREGWVLSGSA----L   74 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCCccccCCHH----HHHHHHHHHHhcCCCEEEEccH----H
Confidence            455 99999999999999987 211      11110000   1111111    1123334445567778998444    3


Q ss_pred             Hhhhc--CCCceEEEEeCCCHHHHHHHHHhc
Q psy6613         217 QLAKT--NLSPCIVYLKISSPKVLQRLIKSR  245 (510)
Q Consensus       217 q~lks--~l~PivIFIkPPS~e~L~~rLr~R  245 (510)
                      .....  ...-.+||+..| .++...|+.+|
T Consensus        75 ~~~~~~~~~~d~~i~Ld~~-~~~~~~Rl~~R  104 (183)
T PRK06217         75 GWGDPLEPLFDLVVFLTIP-PELRLERLRLR  104 (183)
T ss_pred             HHHHHHHhhCCEEEEEECC-HHHHHHHHHcC
Confidence            33222  334467888775 55566666554

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=95.02  E-value=0.055  Score=50.78  Aligned_cols=91  Identities=13%  Similarity=0.127  Sum_probs=46.9

Q ss_pred             HHHHHHHHcCCeEEEEeccCCc-------------hhHhhhc-CC--CceEEEEeCCCHHHHHHHHHhcCC-Cc----HH
Q psy6613         193 ERVYELASTLQLVVLDCDTINH-------------PSQLAKT-NL--SPCIVYLKISSPKVLQRLIKSRGK-SQ----TR  251 (510)
Q Consensus       193 esI~~vi~sGKi~ILDID~qg~-------------~lq~lks-~l--~PivIFIkPPS~e~L~~rLr~Rgt-~~----~e  251 (510)
                      ..|...+++|++||+|=-...+             .+..+.. -+  .|=++|+.--+.++..+|+..|+. ..    ..
T Consensus        71 ~~I~~~l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~  150 (186)
T PF02223_consen   71 RVIRPALKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDL  150 (186)
T ss_dssp             HTHHHHHHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHH
T ss_pred             HHHHHHHcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCccchHHHHHH
Confidence            4567778899999999632110             0111111 22  665555544567888899988877 11    12


Q ss_pred             HHHHHH-HHHHHHHhcCCCCccEEEe--CCCHHHHHHH
Q psy6613         252 HLNVQM-VAAEKLAQCPQEMFDVILD--ENQLEDACEH  286 (510)
Q Consensus       252 ~i~kRL-~aa~eLEq~~~~~FD~VIv--NDdLd~A~~e  286 (510)
                      +...++ ..-.++.. ..+  ..+|+  +.++++..++
T Consensus       151 ~~~~~~~~~y~~l~~-~~~--~~~iid~~~~~e~v~~~  185 (186)
T PF02223_consen  151 EYLRRVREAYLELAK-DPN--NWVIIDASRSIEEVHEQ  185 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TTT--TEEEEETTS-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHc-CCC--CEEEEECCCCHHHHHhh
Confidence            333344 33344444 233  34444  4556555544

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>KOG3771|consensus

Probab=95.00  E-value=0.012  Score=63.88  Aligned_cols=53  Identities=17%  Similarity=0.243  Sum_probs=41.5

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecC-CCceEEEEccCCC--ceeeec
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYD-SNWWIGRLVKEGS--ECGFIP  105 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d-~~WWqar~v~~~~--~~GlIP  105 (510)
                      ..+.|.|+|||...+-+       .|+|+.||+|.|+...+ ++||.|++.|..+  .-|++|
T Consensus       399 ~~~~v~a~~dy~a~~~d-------eLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~  454 (460)
T KOG3771|consen  399 FLYKVKALHDYAAQDTD-------ELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFP  454 (460)
T ss_pred             Cccceeccccccccccc-------cccccCCCEEEEecCCCccchhhHHHhhhccccccccee
Confidence            46679999999999876       49999999999999644 5899999975422  245554

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=94.95  E-value=0.084  Score=49.65  Aligned_cols=137  Identities=13%  Similarity=0.060  Sum_probs=65.5

Q ss_pred             EecCcCChHHHHHHHhc-CC-CCce-eeec-CCCchhhhh-------h----hcccHHHHHHHHHcCCeEEEEeccCCch
Q psy6613         151 ITRVTADISLAKRSLMS-NP-SKRA-IMER-SNSRSSVLT-------E----VQTEIERVYELASTLQLVVLDCDTINHP  215 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P-~~F~-~sVs-hTTR~pFe~-------~----I~TslesI~~vi~sGKi~ILDID~qg~~  215 (510)
                      +|++|+||||+.+.|.. .+ .... ..+. ..-|..+..       +    +..-......++.+|.+||+|.-.....
T Consensus        24 ~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~VI~d~~~~~~~  103 (184)
T TIGR00455        24 TGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVAKLFVRNGIIVITSFISPYRA  103 (184)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCHH
Confidence            89999999999998876 32 1111 2221 112221100       0    0011123355778999999997532200


Q ss_pred             -hHhhhc---CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC--CCCccEEEeCC--CHHHHHHHH
Q psy6613         216 -SQLAKT---NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCP--QEMFDVILDEN--QLEDACEHI  287 (510)
Q Consensus       216 -lq~lks---~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~--~~~FD~VIvND--dLd~A~~eL  287 (510)
                       .+.++.   ...-++||+..| .+++.+|-. ++.- .......+.....+...|  +..-|++|.++  +++++++++
T Consensus       104 ~r~~~~~~~~~~~~~~v~l~~~-~e~~~~R~~-~~l~-~~~~~~~~~~l~~~~~~y~~p~~adl~Idt~~~~~~~~~~~i  180 (184)
T TIGR00455       104 DRQMVRELIEKGEFIEVFVDCP-LEVCEQRDP-KGLY-KKARNGEIKGFTGIDSPYEAPENPEVVLDTDQNDREECVGQI  180 (184)
T ss_pred             HHHHHHHhCcCCCeEEEEEeCC-HHHHHHhCc-hhHH-HHHhcCCccCcccccCCCCCCCCCcEEEECCCCCHHHHHHHH
Confidence             011122   122355777766 666666621 1100 000000110001112222  35668888754  688888877


Q ss_pred             HHH
Q psy6613         288 AEY  290 (510)
Q Consensus       288 ~~i  290 (510)
                      .++
T Consensus       181 ~~~  183 (184)
T TIGR00455       181 IEK  183 (184)
T ss_pred             HHh
Confidence            644

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK14529 adenylate kinase; Provisional

Probab=94.90  E-value=0.53  Score=46.94  Aligned_cols=95  Identities=13%  Similarity=0.044  Sum_probs=53.8

Q ss_pred             CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh----------hhhhhc--------ccHHHHHHHHHc--CCeEE
Q psy6613         148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS----------VLTEVQ--------TEIERVYELAST--LQLVV  206 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p----------Fe~~I~--------TslesI~~vi~s--GKi~I  206 (510)
                      +++ +||+|+||+|+.++|.+....-.++.....|..          +.+.+.        ...+-|.+.+.+  .+-.|
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~i   81 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGWL   81 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcEE
Confidence            355 999999999999998872211223333344432          111111        233334444332  46689


Q ss_pred             EEeccCCchhHhhhc--------CCCc-eEEEEeCCCHHHHHHHHHhc
Q psy6613         207 LDCDTINHPSQLAKT--------NLSP-CIVYLKISSPKVLQRLIKSR  245 (510)
Q Consensus       207 LDID~qg~~lq~lks--------~l~P-ivIFIkPPS~e~L~~rLr~R  245 (510)
                      ||-=|..  ..+...        ...| ++|++..|. ++|.+|+..|
T Consensus        82 LDGfPRt--~~Qa~~l~~~l~~~~~~~~~vi~l~~~~-~~l~~Rl~~R  126 (223)
T PRK14529         82 LDGFPRN--KVQAEKLWEALQKEGMKLDYVIEILLPR-EVAKNRIMGR  126 (223)
T ss_pred             EeCCCCC--HHHHHHHHHHHHhcCCCCCEEEEEECCH-HHHHHHhhCC
Confidence            9998877  444332        2233 467777665 7777777665

>PLN02924 thymidylate kinase

Probab=94.87  E-value=0.41  Score=47.35  Aligned_cols=145  Identities=14%  Similarity=0.068  Sum_probs=76.1

Q ss_pred             CCCCeE--EecCcCChHHHHHHHhcCCCCceeeecCCCchh----------------------------hhhhhcccHHH
Q psy6613         145 SPGMII--ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS----------------------------VLTEVQTEIER  194 (510)
Q Consensus       145 s~~RpI--~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p----------------------------Fe~~I~Tsles  194 (510)
                      ..+++|  -|+-|+||||+.+.|.++-..-++.+ .+||.|                            |.++....++.
T Consensus        14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~   92 (220)
T PLN02924         14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRSL   92 (220)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            356655  79999999999998887211112222 122222                            11111133566


Q ss_pred             HHHHHHcCCeEEEEeccCCc---------hhHhhhc----CCCc-eEEEEeCCCHHHHHHHHHhcCCCc-HHHHHHHH-H
Q psy6613         195 VYELASTLQLVVLDCDTINH---------PSQLAKT----NLSP-CIVYLKISSPKVLQRLIKSRGKSQ-TRHLNVQM-V  258 (510)
Q Consensus       195 I~~vi~sGKi~ILDID~qg~---------~lq~lks----~l~P-ivIFIkPPS~e~L~~rLr~Rgt~~-~e~i~kRL-~  258 (510)
                      |...+++|++||+|=-.-.+         ..+.+..    .+.| ++||+.. +.++..+|...++..- ..+..+++ .
T Consensus        93 I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~-~~~~a~~R~~~~~~~~E~~~~~~rv~~  171 (220)
T PLN02924         93 MERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDI-SPEEAAERGGYGGERYEKLEFQKKVAK  171 (220)
T ss_pred             HHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeC-CHHHHHHHhccCccccccHHHHHHHHH
Confidence            88888999999999754411         0122222    2356 4555554 4555555643321111 12333444 2


Q ss_pred             HHHHHHhcCCCCccEEEe--CCCHHHHHHHHHHHHHHHHH
Q psy6613         259 AAEKLAQCPQEMFDVILD--ENQLEDACEHIAEYLEAYWR  296 (510)
Q Consensus       259 aa~eLEq~~~~~FD~VIv--NDdLd~A~~eL~~ileai~~  296 (510)
                      +=.++..   .  .++++  +.++++..+++.++|.....
T Consensus       172 ~Y~~la~---~--~~~vIDa~~sieeV~~~I~~~I~~~l~  206 (220)
T PLN02924        172 RFQTLRD---S--SWKIIDASQSIEEVEKKIREVVLDTVQ  206 (220)
T ss_pred             HHHHHhh---c--CEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            2233432   1  23333  34688888888877766543

>PRK03846 adenylylsulfate kinase; Provisional

Probab=94.72  E-value=0.2  Score=47.95  Aligned_cols=141  Identities=12%  Similarity=0.147  Sum_probs=67.2

Q ss_pred             CCCeE--EecCcCChHHHHHHHhc--CCCCc-eeeec-CCCchh------h--h---hhhcccHHHHHHHHHcCCeEEEE
Q psy6613         146 PGMII--ITRVTADISLAKRSLMS--NPSKR-AIMER-SNSRSS------V--L---TEVQTEIERVYELASTLQLVVLD  208 (510)
Q Consensus       146 ~~RpI--~GPsGvGKsTL~~rLL~--~P~~F-~~sVs-hTTR~p------F--e---~~I~TslesI~~vi~sGKi~ILD  208 (510)
                      .+.+|  +|++|+|||||.+.|..  .+..+ ...+. ..-|..      +  +   ..+..-.+....++..|.+||.+
T Consensus        23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~G~~VI~~  102 (198)
T PRK03846         23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVAKLMVDAGLVVLTA  102 (198)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHHHHHHHHHHHHHHhhCCCEEEEE
Confidence            34454  89999999999998876  22222 22221 111111      0  0   00011112344567789999876


Q ss_pred             eccCC-chhHhhhcCC--Cce-EEEEeCCCHHHHHHHHHhcCCCc---HHHHHHHHHHHHHHHhcCC--CCccEEEeC--
Q psy6613         209 CDTIN-HPSQLAKTNL--SPC-IVYLKISSPKVLQRLIKSRGKSQ---TRHLNVQMVAAEKLAQCPQ--EMFDVILDE--  277 (510)
Q Consensus       209 ID~qg-~~lq~lks~l--~Pi-vIFIkPPS~e~L~~rLr~Rgt~~---~e~i~kRL~aa~eLEq~~~--~~FD~VIvN--  277 (510)
                      .--.. ...+.++..+  .++ +||+..| .+++.+|.. |+.-.   .+++ ..+   .+....|.  ..-|++|.+  
T Consensus       103 ~~~~~~~~R~~~r~~l~~~~~i~V~L~~~-~e~~~~R~~-r~l~~~~~~~~~-~~l---~~~r~~Y~~p~~ad~~Idt~~  176 (198)
T PRK03846        103 FISPHRAERQMVRERLGEGEFIEVFVDTP-LAICEARDP-KGLYKKARAGEI-RNF---TGIDSVYEAPESPEIHLDTGE  176 (198)
T ss_pred             eCCCCHHHHHHHHHHcccCCEEEEEEcCC-HHHHHhcCc-hhHHHHhhcCCc-cCc---ccccccCCCCCCCCEEEECCC
Confidence            53211 0012233212  244 7888887 556665511 11000   0000 001   00111233  446788874  


Q ss_pred             CCHHHHHHHHHHHHH
Q psy6613         278 NQLEDACEHIAEYLE  292 (510)
Q Consensus       278 DdLd~A~~eL~~ile  292 (510)
                      .++++.++++.++|.
T Consensus       177 ~~~~~vv~~Il~~l~  191 (198)
T PRK03846        177 QLVTNLVEQLLDYLR  191 (198)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            457888888876553

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=94.69  E-value=0.21  Score=48.18  Aligned_cols=139  Identities=22%  Similarity=0.159  Sum_probs=73.9

Q ss_pred             CeE-EecCcCChHHHHHHHhc-CCCCceee---ecCCCchh----hhhh----hc-ccHHHHHHHHHcCCeEEEEeccCC
Q psy6613         148 MII-ITRVTADISLAKRSLMS-NPSKRAIM---ERSNSRSS----VLTE----VQ-TEIERVYELASTLQLVVLDCDTIN  213 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~-~P~~F~~s---VshTTR~p----Fe~~----I~-TslesI~~vi~sGKi~ILDID~qg  213 (510)
                      .+| +|+.||||||+-+.|-+ ---.|.=+   |...+..+    |+.+    +. .+.+.|.+++..+ .+|+-.---.
T Consensus         4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~-~~ViaTGGG~   82 (172)
T COG0703           4 NIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEED-NAVIATGGGA   82 (172)
T ss_pred             cEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcC-CeEEECCCcc
Confidence            355 99999999999998865 22123211   11112222    3321    11 5667788888887 4555443321


Q ss_pred             chhHhh--hc--CCCceEEEEeCCCHHHHHHHHHh---cCCCc---HHHHHHHH-HHHHHHHhcCCCCccEEEeCCCH-H
Q psy6613         214 HPSQLA--KT--NLSPCIVYLKISSPKVLQRLIKS---RGKSQ---TRHLNVQM-VAAEKLAQCPQEMFDVILDENQL-E  281 (510)
Q Consensus       214 ~~lq~l--ks--~l~PivIFIkPPS~e~L~~rLr~---Rgt~~---~e~i~kRL-~aa~eLEq~~~~~FD~VIvNDdL-d  281 (510)
                        ...-  +.  .-..++||+..| +++|.+|++.   |..-.   ..+....+ +.-.-+.+   ..=|+++..++- +
T Consensus        83 --v~~~enr~~l~~~g~vv~L~~~-~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~---e~a~~~~~~~~~~~  156 (172)
T COG0703          83 --VLSEENRNLLKKRGIVVYLDAP-FETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYR---EVADFIIDTDDRSE  156 (172)
T ss_pred             --ccCHHHHHHHHhCCeEEEEeCC-HHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHH---HhCcEEecCCCCcH
Confidence              1111  11  124589999985 8899999873   22111   11223333 33333333   335777766554 4


Q ss_pred             HHHHHHHHHHHH
Q psy6613         282 DACEHIAEYLEA  293 (510)
Q Consensus       282 ~A~~eL~~ilea  293 (510)
                      ...+++...+..
T Consensus       157 ~v~~~i~~~l~~  168 (172)
T COG0703         157 EVVEEILEALEG  168 (172)
T ss_pred             HHHHHHHHHHHH
Confidence            555666644443

>KOG1702|consensus

Probab=94.57  E-value=0.031  Score=55.18  Aligned_cols=53  Identities=23%  Similarity=0.414  Sum_probs=44.4

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChh
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPV  108 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~  108 (510)
                      -..||.|||.+++.+       +++|.-||.|--+..-|.+|.-|.++.. |..|+.|.+.
T Consensus       208 ktyra~ydysaqded-------evsF~dgd~ivnvq~iddGWmygtv~rt-g~tGmlpaNy  260 (264)
T KOG1702|consen  208 KTYRAFYDYSAQDED-------EVSFVDGDYIVNVQSIDDGWMYGTVVRT-GWTGMLPANY  260 (264)
T ss_pred             ccchhhccCcccCcc-------eeEEecCCeEEEEEeccCCceeeEEEec-cccCCCchhh
Confidence            357999999998865       5999999998888888888988888764 7899999764

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=94.55  E-value=0.14  Score=57.56  Aligned_cols=137  Identities=12%  Similarity=0.068  Sum_probs=71.3

Q ss_pred             EecCcCChHHHHHHHhc--CC--CC-ceeeecCCCchhhhhhh-------c---ccH-HHHHHHHHcCCeEEEEeccCC-
Q psy6613         151 ITRVTADISLAKRSLMS--NP--SK-RAIMERSNSRSSVLTEV-------Q---TEI-ERVYELASTLQLVVLDCDTIN-  213 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~--~P--~~-F~~sVshTTR~pFe~~I-------~---Tsl-esI~~vi~sGKi~ILDID~qg-  213 (510)
                      +|++|+|||||.+.|..  ..  .. +.+.-...-|..+..+.       .   ..+ .....+++.|..||+|.-.-- 
T Consensus       398 ~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~a~~v~~~Gg~vI~~~~~p~~  477 (568)
T PRK05537        398 TGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVASEITKNGGIAICAPIAPYR  477 (568)
T ss_pred             ECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCchH
Confidence            89999999999999876  22  11 12222222232211110       0   112 233558889999999964211 


Q ss_pred             ----chhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCc--HHHHHHHH-HHHHHHHhcC-CCCccEEEeCC--CHHHH
Q psy6613         214 ----HPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQ--TRHLNVQM-VAAEKLAQCP-QEMFDVILDEN--QLEDA  283 (510)
Q Consensus       214 ----~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~--~e~i~kRL-~aa~eLEq~~-~~~FD~VIvND--dLd~A  283 (510)
                          ...++++..-..++||+..| .+++.+|.+. +.-.  .....+.+ ..-   ...| +..-|++|.++  +.+++
T Consensus       478 ~~R~~nr~llk~~g~fivV~L~~p-~e~l~~R~rr-~Ll~~~~~~~i~~l~~~R---~~yy~p~~Adl~IDt~~~s~~ei  552 (568)
T PRK05537        478 ATRREVREMIEAYGGFIEVHVATP-LEVCEQRDRK-GLYAKAREGKIKGFTGIS---DPYEPPANPELVIDTTNVTPDEC  552 (568)
T ss_pred             HHHHHHHHHHhhcCCEEEEEEcCC-HHHHHHhccc-cccccchhchhhcccccc---ccccCCCCCcEEEECCCCCHHHH
Confidence                00222222112257888877 8888888642 2110  00111111 100   1122 24568888765  58888


Q ss_pred             HHHHHHHHH
Q psy6613         284 CEHIAEYLE  292 (510)
Q Consensus       284 ~~eL~~ile  292 (510)
                      ++++.++|+
T Consensus       553 v~~Il~~L~  561 (568)
T PRK05537        553 AHKILLYLE  561 (568)
T ss_pred             HHHHHHHHH
Confidence            888886664

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=94.53  E-value=0.088  Score=47.93  Aligned_cols=102  Identities=13%  Similarity=0.119  Sum_probs=56.2

Q ss_pred             EEecCcCChHHHHHHHhcCCCCceeeecCCCchh----------hhhhhc--------ccHHHHHHHHH---cCCeEEEE
Q psy6613         150 IITRVTADISLAKRSLMSNPSKRAIMERSNSRSS----------VLTEVQ--------TEIERVYELAS---TLQLVVLD  208 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p----------Fe~~I~--------TslesI~~vi~---sGKi~ILD  208 (510)
                      |+||+|+||+|+.++|.+...--.+++..--|.-          ..+.+.        .-.+-|..-+.   ..+..|||
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild   80 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD   80 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence            4799999999999999882222223322211111          111111        11122222222   46889999


Q ss_pred             eccCCchhHhhhc--------CCCc-eEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH
Q psy6613         209 CDTINHPSQLAKT--------NLSP-CIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM  257 (510)
Q Consensus       209 ID~qg~~lq~lks--------~l~P-ivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL  257 (510)
                      -=|..  ....+.        ...| .+|++..| .+.+.+|+..   ++.+.+.+||
T Consensus        81 GfPrt--~~Qa~~l~~~~~~~~~~~~~vi~L~~~-~~~~~~R~~~---d~~~~i~~Rl  132 (151)
T PF00406_consen   81 GFPRT--LEQAEALEEILEEEGIPPDLVIFLDCP-DETLIERLSQ---DNEEVIKKRL  132 (151)
T ss_dssp             SB-SS--HHHHHHHHHHHHHTTSEESEEEEEE---HHHHHHHHHT---GSHHHHHHHH
T ss_pred             ecccc--HHHHHHHHHHHhhcccchheeeccccc-hhhhhhhccc---CCHHHHHHHH
Confidence            99987  443332        2445 55666655 4677777766   6667788887

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK14528 adenylate kinase; Provisional

Probab=94.52  E-value=0.55  Score=44.80  Aligned_cols=138  Identities=14%  Similarity=0.065  Sum_probs=68.7

Q ss_pred             CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh------hh----hhhc--------ccHHHHHHHHHc---CCeE
Q psy6613         148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS------VL----TEVQ--------TEIERVYELAST---LQLV  205 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p------Fe----~~I~--------TslesI~~vi~s---GKi~  205 (510)
                      +++ +||+|+||+|+.+.|.++...-.++...--|.-      +-    ..+.        .....+.+.+.+   ....
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g~   82 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNGF   82 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCcE
Confidence            455 999999999999988762211111111111211      00    0000        111233333332   3457


Q ss_pred             EEEeccCCchhHhhhc--------CCCc-eEEEEeCCCHHHHHHHHHhc------CCCcHHHHHHHH----HHHHHHHhc
Q psy6613         206 VLDCDTINHPSQLAKT--------NLSP-CIVYLKISSPKVLQRLIKSR------GKSQTRHLNVQM----VAAEKLAQC  266 (510)
Q Consensus       206 ILDID~qg~~lq~lks--------~l~P-ivIFIkPPS~e~L~~rLr~R------gt~~~e~i~kRL----~aa~eLEq~  266 (510)
                      |+|--|..  ....+.        ...| .+|++..|. +++.+|+..|      ..++.+.+.+||    .....+..+
T Consensus        83 viDG~Pr~--~~qa~~l~~~~~~~~~~~d~vI~Ld~~~-~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~  159 (186)
T PRK14528         83 LLDGFPRT--VEQADALDALLKNEGKSIDKAINLEVPD-GELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDF  159 (186)
T ss_pred             EEeCCCCC--HHHHHHHHHHHHhcCCCCCEEEEEECCH-HHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHHH
Confidence            88887765  322221        1233 456666654 4566666654      245678888998    222334444


Q ss_pred             CC--CCccEEEeCCCHHHHHHHHH
Q psy6613         267 PQ--EMFDVILDENQLEDACEHIA  288 (510)
Q Consensus       267 ~~--~~FD~VIvNDdLd~A~~eL~  288 (510)
                      |.  +.+-.|=-+.+.++.+.+|.
T Consensus       160 y~~~~~~~~i~~~~~~~~v~~~~~  183 (186)
T PRK14528        160 YAAQKKLSQVNGVGSLEEVTSLIQ  183 (186)
T ss_pred             HHhCCCEEEEECCCCHHHHHHHHH
Confidence            42  22222223456777776665

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=94.42  E-value=0.76  Score=42.97  Aligned_cols=17  Identities=6%  Similarity=-0.036  Sum_probs=15.4

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||||+||||+.+.|..
T Consensus         1 ~G~sGsGKSTla~~la~   17 (163)
T PRK11545          1 MGVSGSGKSAVASEVAH   17 (163)
T ss_pred             CCCCCCcHHHHHHHHHH
Confidence            59999999999998876

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=94.38  E-value=0.86  Score=44.30  Aligned_cols=140  Identities=16%  Similarity=0.191  Sum_probs=71.4

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCC--------------chhhh---hhhc--ccHHHHHHHHHcCCeEEEEecc
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNS--------------RSSVL---TEVQ--TEIERVYELASTLQLVVLDCDT  211 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTT--------------R~pFe---~~I~--TslesI~~vi~sGKi~ILDID~  211 (510)
                      .|-+||||||+++-+.+.- -+...|.+-+              |..+-   -+.|  .-..+.+++.+.+..+|+|.+.
T Consensus        10 tGVpGvGKTTVl~~~~~~l-~~~~ivNyG~~Mle~A~k~glve~rD~~Rklp~e~Q~~lq~~Aa~rI~~~~~~iivDtH~   88 (189)
T COG2019          10 TGVPGVGKTTVLKIALKEL-VKHKIVNYGDLMLEIAKKKGLVEHRDEMRKLPLENQRELQAEAAKRIAEMALEIIVDTHA   88 (189)
T ss_pred             EcCCCCChHHHHHHHHHHH-hhceeeeHhHHHHHHHHHhCCcccHHHHhcCCHHHHHHHHHHHHHHHHHhhhceEEeccc
Confidence            8999999999988766511 0111121111              11000   0001  3445667777777778888863


Q ss_pred             ---------CCchhHhhhcCCCceEEEEeCCCHHHHH-HHHHh----cCCCcHHHHHHHH--HHHHHHHh-cCCCCccEE
Q psy6613         212 ---------INHPSQLAKTNLSPCIVYLKISSPKVLQ-RLIKS----RGKSQTRHLNVQM--VAAEKLAQ-CPQEMFDVI  274 (510)
Q Consensus       212 ---------qg~~lq~lks~l~PivIFIkPPS~e~L~-~rLr~----Rgt~~~e~i~kRL--~aa~eLEq-~~~~~FD~V  274 (510)
                               .|.|.-++. .++|=+|+|.--+.+++. +|++.    |.-++.+++..-+  .....+.. ...+--=.|
T Consensus        89 ~IkTP~GylpgLP~~Vl~-~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~nR~aA~a~A~~~gatVkI  167 (189)
T COG2019          89 TIKTPAGYLPGLPSWVLE-ELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMNRAAAMAYAILLGATVKI  167 (189)
T ss_pred             eecCCCccCCCCcHHHHH-hcCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence                     121211222 356666666666665554 44433    3334455544332  21222221 111222345


Q ss_pred             EeCC--CHHHHHHHHHHHHH
Q psy6613         275 LDEN--QLEDACEHIAEYLE  292 (510)
Q Consensus       275 IvND--dLd~A~~eL~~ile  292 (510)
                      |.|+  +++.|..++...|+
T Consensus       168 V~n~~~~~e~Aa~eiv~~l~  187 (189)
T COG2019         168 VENHEGDPEEAAEEIVELLD  187 (189)
T ss_pred             EeCCCCCHHHHHHHHHHHHh
Confidence            5665  79999999886553

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=94.15  E-value=0.8  Score=44.89  Aligned_cols=55  Identities=9%  Similarity=0.163  Sum_probs=31.5

Q ss_pred             CceEEEEeCCCHHHHHHHHHhcC---CCcHHHHHHHHHHH----HH-HHhcCCCCccEEEeCCCH
Q psy6613         224 SPCIVYLKISSPKVLQRLIKSRG---KSQTRHLNVQMVAA----EK-LAQCPQEMFDVILDENQL  280 (510)
Q Consensus       224 ~PivIFIkPPS~e~L~~rLr~Rg---t~~~e~i~kRL~aa----~e-LEq~~~~~FD~VIvNDdL  280 (510)
                      .-.+|||.+|... ..+|+..|+   .-+.+++.+++...    .+ ++. ....=|+||.|+..
T Consensus       161 ~D~vi~v~~~~~~-~~~R~~~R~~~~g~s~~~~~~~~~~~~~~~~~~i~~-~~~~ad~vI~n~~~  223 (229)
T PRK09270        161 FDFTIFLDAPAEV-LRERLVARKLAGGLSPEAAEAFVLRNDGPNARLVLE-TSRPADLVLEMTAT  223 (229)
T ss_pred             CCEEEEEECCHHH-HHHHHHHHHHhcCCCHHHHHHHHHhcChHHHHHHHh-cCCCCCEEEEecCC
Confidence            3478999987654 445554552   22445666666221    11 222 23677999998764

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=94.04  E-value=0.75  Score=44.44  Aligned_cols=137  Identities=16%  Similarity=0.134  Sum_probs=71.3

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeec--CCCchh----------hhhh------hcccHHHH-HHHHHcCCeEEEEecc
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMER--SNSRSS----------VLTE------VQTEIERV-YELASTLQLVVLDCDT  211 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVs--hTTR~p----------Fe~~------I~TslesI-~~vi~sGKi~ILDID~  211 (510)
                      +||+|+||||+.++|-++-. +.+ |+  .+=|..          |.+.      +--.++.- .+++. ...|||+-..
T Consensus         6 sG~pGsG~TTva~~lAe~~g-l~~-vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~-~~nvVlegrL   82 (179)
T COG1102           6 SGLPGSGKTTVARELAEHLG-LKL-VSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAK-EGNVVLEGRL   82 (179)
T ss_pred             ccCCCCChhHHHHHHHHHhC-Cce-eeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHH-cCCeEEhhhh
Confidence            89999999999998887221 111 22  122333          1110      00222222 23344 7778888877


Q ss_pred             CCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH---HHHHHHH--hcC------CCCccEEEeCCCH
Q psy6613         212 INHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM---VAAEKLA--QCP------QEMFDVILDENQL  280 (510)
Q Consensus       212 qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL---~aa~eLE--q~~------~~~FD~VIvNDdL  280 (510)
                      -|.   +.+ ....+-||++.|=.-.. +|...|..-+-++....+   +.+++..  ..|      =..||.||....+
T Consensus        83 A~W---i~k-~~adlkI~L~Apl~vRa-~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~YgIDidDlSiyDLVinTs~~  157 (179)
T COG1102          83 AGW---IVR-EYADLKIWLKAPLEVRA-ERIAKREGIDVDEALAETVEREESEKKRYKKIYGIDIDDLSIYDLVINTSKW  157 (179)
T ss_pred             HHH---Hhc-cccceEEEEeCcHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCccceeeEEEEecccC
Confidence            552   222 34556799999843333 444444433333444444   2222211  112      2468999977666


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy6613         281 EDACEHIAEYLEAYWRA  297 (510)
Q Consensus       281 d~A~~eL~~ileai~~a  297 (510)
                      +.  +++..+|..-+..
T Consensus       158 ~~--~~v~~il~~aid~  172 (179)
T COG1102         158 DP--EEVFLILLDAIDA  172 (179)
T ss_pred             CH--HHHHHHHHHHHHh
Confidence            55  5566555544443

>COG4639 Predicted kinase [General function prediction only]

Probab=94.02  E-value=0.41  Score=45.84  Aligned_cols=124  Identities=9%  Similarity=0.017  Sum_probs=69.2

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchh-----hhhhhc--------ccHHHHHHHHHcCCeEEEEeccCCchh-
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS-----VLTEVQ--------TEIERVYELASTLQLVVLDCDTINHPS-  216 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p-----Fe~~I~--------TslesI~~vi~sGKi~ILDID~qg~~l-  216 (510)
                      +|++|+||+|..+....  +.+..++..+ |.-     -.+..+        .-.+..+..+++|++.|+|...-- +. 
T Consensus         8 ~G~~~sGKsT~ak~n~~--~~~~lsld~~-r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiidAtn~r-r~~   83 (168)
T COG4639           8 RGASGSGKSTFAKENFL--QNYVLSLDDL-RLLLGVSASKENSQKNDELVWDILYKQLEQRLRRGKFTIIDATNLR-RED   83 (168)
T ss_pred             ecCCCCchhHHHHHhCC--CcceecHHHH-HHHhhhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEEcccCC-HHH
Confidence            99999999998886543  2233333322 221     011111        344566778899999999997622 11 


Q ss_pred             -Hhhh----c-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCCCHH
Q psy6613         217 -QLAK----T-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVILDENQLE  281 (510)
Q Consensus       217 -q~lk----s-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvNDdLd  281 (510)
                       +.+.    . .+.+++|.+.-| .+.+.+|.+.|...-.+++..+| .....++-  +..|-++..+..-+
T Consensus        84 r~~l~~La~~y~~~~~~ivfdtp-~~~c~aRNk~~~Rqv~~~VI~r~~r~~~~~l~--~e~~~~~~~~~s~e  152 (168)
T COG4639          84 RRKLIDLAKAYGYKIYAIVFDTP-LELCLARNKLRERQVPEEVIPRMLRETIDLLE--KEPFRYVWTLSSPE  152 (168)
T ss_pred             HHHHHHHHHHhCCeEEEEEEeCC-HHHHHHHhhccchhCCHHHHHHHHHHHHhhcc--CCCeEEEEecCCHH
Confidence             1111    1 456677766665 45666665544434445566666 44333222  24566666665543

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=93.87  E-value=1.1  Score=44.64  Aligned_cols=96  Identities=16%  Similarity=0.143  Sum_probs=54.4

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchhh----hhhhc------------ccHHHHHHHHHcCCeEEEEec----
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSSV----LTEVQ------------TEIERVYELASTLQLVVLDCD----  210 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~pF----e~~I~------------TslesI~~vi~sGKi~ILDID----  210 (510)
                      .||.|+|||||.++|-++-. +....-..+--||    .++.+            ...+.+..+.+.+- .|+|-.    
T Consensus        10 ~G~IG~GKSTLa~~La~~l~-~~~~~E~vednp~L~~FY~d~~~yaf~~QiyFL~~Rfk~~k~~~~~~~-~i~drsI~eD   87 (216)
T COG1428          10 EGMIGAGKSTLAQALAEHLG-FKVFYELVEDNPFLDLFYEDPERYAFLLQIYFLLNRFKKIKKALSDKN-NILDRSIFED   87 (216)
T ss_pred             ecccccCHHHHHHHHHHHhC-CceeeecccCChHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhcccc-cccCcchhhh
Confidence            79999999999999988322 2222222222353    32221            45566677666655 555511    


Q ss_pred             c---------CCc---------------hhHhhhc-CCCc-eEEEEeCCCHHHHHHHHHhcCCCc
Q psy6613         211 T---------INH---------------PSQLAKT-NLSP-CIVYLKISSPKVLQRLIKSRGKSQ  249 (510)
Q Consensus       211 ~---------qg~---------------~lq~lks-~l~P-ivIFIkPPS~e~L~~rLr~Rgt~~  249 (510)
                      .         +||               +++.+-. ...| .+|||.. |+++|++|+..||.+-
T Consensus        88 ~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~-~~e~~l~RI~~RgR~~  151 (216)
T COG1428          88 YFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDA-SLETLLRRIAKRGRPF  151 (216)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeC-CHHHHHHHHHHhCCCc
Confidence            1         110               0111111 1133 5677776 8999999999998643

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=93.79  E-value=0.58  Score=52.29  Aligned_cols=89  Identities=9%  Similarity=-0.005  Sum_probs=56.0

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchhhhhhhcccHHHHHHHHHcCCeEEEEeccCCchhHh------hhc-CC
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTINHPSQL------AKT-NL  223 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~pFe~~I~TslesI~~vi~sGKi~ILDID~qg~~lq~------lks-~l  223 (510)
                      +|++|+||||+.++++... .+...-+.+     ....+.-++.+.+.+++|+.||+|-.--. ...+      .+. ..
T Consensus       375 ~G~pGSGKST~A~~l~~~~-g~~~vn~D~-----lg~~~~~~~~a~~~L~~G~sVVIDaTn~~-~~~R~~~i~lAk~~gv  447 (526)
T TIGR01663       375 VGFPGAGKSHFCKKFFQPA-GYKHVNADT-----LGSTQNCLTACERALDQGKRCAIDNTNPD-AASRAKFLQCARAAGI  447 (526)
T ss_pred             ECCCCCCHHHHHHHHHHHc-CCeEECcHH-----HHHHHHHHHHHHHHHhCCCcEEEECCCCC-HHHHHHHHHHHHHcCC
Confidence            9999999999999988721 122221111     11112345678889999999999986533 2111      112 23


Q ss_pred             CceEEEEeCCCHHHHHHHHHhcCC
Q psy6613         224 SPCIVYLKISSPKVLQRLIKSRGK  247 (510)
Q Consensus       224 ~PivIFIkPPS~e~L~~rLr~Rgt  247 (510)
                      ..++||+.. +.+++++|++.|..
T Consensus       448 ~v~~i~~~~-p~e~~~~Rn~~R~~  470 (526)
T TIGR01663       448 PCRCFLFNA-PLAQAKHNIAFREL  470 (526)
T ss_pred             eEEEEEeCC-CHHHHHHHHHhhcc
Confidence            344556665 48899999888754

Note that the EC number for the kinase function is: 2.7.1.78

>PHA00729 NTP-binding motif containing protein

Probab=93.75  E-value=0.13  Score=51.61  Aligned_cols=24  Identities=21%  Similarity=0.285  Sum_probs=20.5

Q ss_pred             ceEEEEeCCCHHHHHHHHHhcCCC
Q psy6613         225 PCIVYLKISSPKVLQRLIKSRGKS  248 (510)
Q Consensus       225 PivIFIkPPS~e~L~~rLr~Rgt~  248 (510)
                      ..+|.+.+++.++|..+++.||-.
T Consensus       119 ~~l~il~~ls~edL~~~Lr~Rg~~  142 (226)
T PHA00729        119 VSAVIFTTPSPEDLAFYLREKGWY  142 (226)
T ss_pred             CcEEEEecCCHHHHHHHHHhCCCc
Confidence            456788888999999999999874

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=93.72  E-value=0.47  Score=45.45  Aligned_cols=92  Identities=11%  Similarity=0.075  Sum_probs=47.4

Q ss_pred             EecCcCChHHHHHHHhc-C-CCCceeeecCCCchh---hhhh-----------hc-----ccHHHHHHHHHcCCeEEEEe
Q psy6613         151 ITRVTADISLAKRSLMS-N-PSKRAIMERSNSRSS---VLTE-----------VQ-----TEIERVYELASTLQLVVLDC  209 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~-P~~F~~sVshTTR~p---Fe~~-----------I~-----TslesI~~vi~sGKi~ILDI  209 (510)
                      .|++|+||||+...++. . ...+...-+..-|..   +.+.           .+     ..-..+..+++.|.++|+|.
T Consensus        21 aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~~~~nii~E~  100 (199)
T PF06414_consen   21 AGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIENRYNIIFEG  100 (199)
T ss_dssp             ES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHCT--EEEE-
T ss_pred             eCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEec
Confidence            79999999999999888 5 444554444444433   1110           00     23345677889999999998


Q ss_pred             ccCC--chh---Hhhhc-CCCceEEEEeCCCHHHHHHHHH
Q psy6613         210 DTIN--HPS---QLAKT-NLSPCIVYLKISSPKVLQRLIK  243 (510)
Q Consensus       210 D~qg--~~l---q~lks-~l~PivIFIkPPS~e~L~~rLr  243 (510)
                      ....  .+.   +.++. .+...++||..| .+.-..|..
T Consensus       101 tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~-~e~s~~rv~  139 (199)
T PF06414_consen  101 TLSNPSKLRKLIREAKAAGYKVELYYVAVP-PELSIERVR  139 (199)
T ss_dssp             -TTSSHHHHHHHHHHHCTT-EEEEEEE----HHHHHHHHH
T ss_pred             CCCChhHHHHHHHHHHcCCceEEEEEEECC-HHHHHHHHH
Confidence            6643  011   12233 566667777765 344444443

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>KOG3347|consensus

Probab=93.51  E-value=1.7  Score=41.76  Aligned_cols=94  Identities=16%  Similarity=0.094  Sum_probs=57.9

Q ss_pred             eE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh-----hhhhhc-------ccHHHHHHHHHcCCeEEEEeccCCch
Q psy6613         149 II-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS-----VLTEVQ-------TEIERVYELASTLQLVVLDCDTINHP  215 (510)
Q Consensus       149 pI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p-----Fe~~I~-------TslesI~~vi~sGKi~ILDID~qg~~  215 (510)
                      |+ .|-+|+||||+..+|-+.-+--.+.++.--+..     |.+...       .-++.+...+.+|- +|+|-+.-+  
T Consensus        10 ILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg-~IVDyHgCd--   86 (176)
T KOG3347|consen   10 ILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEGG-NIVDYHGCD--   86 (176)
T ss_pred             EEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhcCC-cEEeecccC--
Confidence            44 899999999999999873323344565544444     112211       45677777777765 455554433  


Q ss_pred             hHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCc
Q psy6613         216 SQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQ  249 (510)
Q Consensus       216 lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~  249 (510)
                        +... -|+.  ||+.--...+|-.||++||-+.
T Consensus        87 --~Fperwfdl--VvVLr~~~s~LY~RL~sRgY~e  117 (176)
T KOG3347|consen   87 --FFPERWFDL--VVVLRTPNSVLYDRLKSRGYSE  117 (176)
T ss_pred             --ccchhheeE--EEEEecCchHHHHHHHHcCCCH
Confidence              3333 2333  4444444678999999999654

>COG0645 Predicted kinase [General function prediction only]

Probab=93.36  E-value=1.1  Score=43.12  Aligned_cols=136  Identities=15%  Similarity=0.051  Sum_probs=82.6

Q ss_pred             EecCcCChHHHHHHHhc-CCCCce---------eeecCCCchhh-------hhhhc-ccHHHHHHHHHcCCeEEEEeccC
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRA---------IMERSNSRSSV-------LTEVQ-TEIERVYELASTLQLVVLDCDTI  212 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~---------~sVshTTR~pF-------e~~I~-TslesI~~vi~sGKi~ILDID~q  212 (510)
                      .|=+|+||+|+...|-+ .+...-         .-+|.-||.|+       ...++ .-...-..++..|..||||.-..
T Consensus         7 ~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~G~~VVlDa~~~   86 (170)
T COG0645           7 GGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSSGHSVVLDATFD   86 (170)
T ss_pred             ecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCcEEEecccC
Confidence            78999999999999887 432211         12566677762       22222 33444567889999999999775


Q ss_pred             CchhHhhh------cCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEEEeCCCHHHHHHH
Q psy6613         213 NHPSQLAK------TNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEH  286 (510)
Q Consensus       213 g~~lq~lk------s~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~VIvNDdLd~A~~e  286 (510)
                      - +.+.-.      ..--++++|-..-..++++.|+..|.-+..+....=+ ..+..+....-.++.+.++...+....+
T Consensus        87 r-~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d~sDA~~~il-~~q~~~~~~~~~~~~~~~~~~~~~~~~~  164 (170)
T COG0645          87 R-PQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGDASDATFDIL-RVQLAEDEPWTEWETADTDTARTRDVSQ  164 (170)
T ss_pred             C-HHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCCcccchHHHH-HHHHhhhCCcccccchhhcccccccHHH
Confidence            4 222211      1223677777777899999999998653332222111 1122223334566777766665555666


Q ss_pred             HH
Q psy6613         287 IA  288 (510)
Q Consensus       287 L~  288 (510)
                      |.
T Consensus       165 l~  166 (170)
T COG0645         165 LA  166 (170)
T ss_pred             HH
Confidence            65

>KOG3557|consensus

Probab=93.32  E-value=0.028  Score=62.94  Aligned_cols=54  Identities=17%  Similarity=0.295  Sum_probs=45.7

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      -++..+|||.+....       +|+..+||+|+|++.. .+||..++.  .|++|++|+.-+..
T Consensus       501 k~~~~~Ydf~arNs~-------ELsV~k~E~LEvl~d~-R~WW~~kn~--~G~~GyvP~nIL~~  554 (721)
T KOG3557|consen  501 KWVLVLYDFQARNSS-------ELSVKKGEVLEVLDDG-RKWWKVKNG--HGRAGYVPSNILAP  554 (721)
T ss_pred             eeeeeehhhhcccch-------hhhhhhhhhhhhhhcc-ccceeccCc--cCCCCCcchhhhcc
Confidence            378899999999864       6999999999999864 579999873  57899999988765

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=93.25  E-value=0.64  Score=49.88  Aligned_cols=69  Identities=17%  Similarity=0.281  Sum_probs=40.2

Q ss_pred             CCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHH--HHHHHhcCCCCccEEEeCC-CHHHHHHHHHHHHHHHH
Q psy6613         223 LSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVA--AEKLAQCPQEMFDVILDEN-QLEDACEHIAEYLEAYW  295 (510)
Q Consensus       223 l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~a--a~eLEq~~~~~FD~VIvND-dLd~A~~eL~~ileai~  295 (510)
                      +.-.+|||..|.-..+++.+..||.+ .+....++..  ..+-.   ...-|+||.|+ +++....++..+++.+.
T Consensus       123 ~~D~iI~V~ap~e~ri~Rl~~rRg~s-~~~a~~ri~~Q~~~e~k---~~~AD~vIdN~~s~e~l~~~v~~~l~~~~  194 (395)
T PRK03333        123 LFHLVVVVDADVEVRVRRLVEQRGMA-EADARARIAAQASDEQR---RAVADVWLDNSGTPDELVEAVRALWADRL  194 (395)
T ss_pred             hCCEEEEEECCHHHHHHHHHhcCCCC-HHHHHHHHHhcCChHHH---HHhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence            44688999997655555444445643 4444555522  11111   12348999876 57777777776665543

>KOG3354|consensus

Probab=93.24  E-value=1.2  Score=43.05  Aligned_cols=141  Identities=16%  Similarity=0.183  Sum_probs=72.9

Q ss_pred             CCCCCeE-EecCcCChHHHHHHHhc-CCCCceee-----------------ecCCCchhhhhhhcccHHHHHHHHHcCCe
Q psy6613         144 PSPGMII-ITRVTADISLAKRSLMS-NPSKRAIM-----------------ERSNSRSSVLTEVQTEIERVYELASTLQL  204 (510)
Q Consensus       144 Ps~~RpI-~GPsGvGKsTL~~rLL~-~P~~F~~s-----------------VshTTR~pFe~~I~TslesI~~vi~sGKi  204 (510)
                      |...-++ .|++|+||||+-+.|.+ .--.|.-.                 ....-|=|....++   ...+..+.+|+.
T Consensus        10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~---~~~~~~l~~~q~   86 (191)
T KOG3354|consen   10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIA---VELRKALASGQG   86 (191)
T ss_pred             CCceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCCcccccHHHHHHH---HHHHHHhhcCCe
Confidence            5544555 99999999999998876 22122211                 11111111222221   122333448999


Q ss_pred             EEEEeccCC-chhHhhhcC-----------CCceEEEEeCCCHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHHh--cC-
Q psy6613         205 VVLDCDTIN-HPSQLAKTN-----------LSPCIVYLKISSPKVLQRLIKSRGKSQ--TRHLNVQMVAAEKLAQ--CP-  267 (510)
Q Consensus       205 ~ILDID~qg-~~lq~lks~-----------l~PivIFIkPPS~e~L~~rLr~Rgt~~--~e~i~kRL~aa~eLEq--~~-  267 (510)
                      +||-|..-- ..-.+++..           -.-.+||+.. |.+++.+|+.+|..--  .+=+..++   .-||.  +. 
T Consensus        87 vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~-s~evi~~Rl~~R~gHFMp~~lleSQf---~~LE~p~~~e  162 (191)
T KOG3354|consen   87 VVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSA-SFEVILKRLKKRKGHFMPADLLESQF---ATLEAPDADE  162 (191)
T ss_pred             EEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeec-cHHHHHHHHhhcccccCCHHHHHHHH---HhccCCCCCc
Confidence            999886411 001122221           1235677777 9999999999885421  11111111   22332  11 


Q ss_pred             CCCccEEEeCCCHHHHHHHHHHHH
Q psy6613         268 QEMFDVILDENQLEDACEHIAEYL  291 (510)
Q Consensus       268 ~~~FD~VIvNDdLd~A~~eL~~il  291 (510)
                      ...|..-+.|-+.++.+..+.+.+
T Consensus       163 ~div~isv~~~~~e~iv~tI~k~~  186 (191)
T KOG3354|consen  163 EDIVTISVKTYSVEEIVDTIVKMV  186 (191)
T ss_pred             cceEEEeeccCCHHHHHHHHHHHH
Confidence            134444555677777777666443

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=93.23  E-value=2.6  Score=41.11  Aligned_cols=17  Identities=6%  Similarity=0.028  Sum_probs=15.6

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      -|..|+||||+.+.|.+
T Consensus         5 EG~~GsGKSTl~~~L~~   21 (219)
T cd02030           5 DGNIASGKGKLAKELAE   21 (219)
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            69999999999998876

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=93.20  E-value=0.25  Score=47.44  Aligned_cols=71  Identities=13%  Similarity=0.204  Sum_probs=36.2

Q ss_pred             CCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCCC
Q psy6613         202 LQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVILDENQ  279 (510)
Q Consensus       202 GKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvNDd  279 (510)
                      .+.|++|+..--   +. .. .+.-.+|+|..|.-..+++.++++| -+.+.+..|+ .+...-+..  ..-|+||.|+.
T Consensus       104 ~~~~v~e~pLL~---E~-~~~~~~D~vi~V~a~~e~ri~Rl~~R~~-~~~~~~~~ri~~Q~~~~~k~--~~ad~vI~N~g  176 (180)
T PF01121_consen  104 EKVVVVEIPLLF---ES-GLEKLCDEVIVVYAPEEIRIKRLMERDG-LSEEEAEARIASQMPDEEKR--KRADFVIDNNG  176 (180)
T ss_dssp             TSEEEEE-TTTT---TT-TGGGGSSEEEEEE--HHHHHHHHHHHHT-STHHHHHHHHHTS--HHHHH--HH-SEEEE-SS
T ss_pred             CCEEEEEcchhh---hh-hHhhhhceEEEEECCHHHHHHHHHhhCC-CcHHHHHHHHHhCCCHHHHH--HhCCEEEECCC
Confidence            378999987521   11 11 3345788888875544555444444 4556677777 222211111  24599999975

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=93.19  E-value=0.98  Score=44.62  Aligned_cols=144  Identities=19%  Similarity=0.163  Sum_probs=78.0

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchhh----hh-----------hhc--------------ccHHH
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSSV----LT-----------EVQ--------------TEIER  194 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~pF----e~-----------~I~--------------Tsles  194 (510)
                      +..|  =|.-|+||||+.+.|.+ .... ++.| .+||.|.    -+           .+.              .-.+.
T Consensus         3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~-g~~v-~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~   80 (208)
T COG0125           3 GMFIVIEGIDGAGKTTQAELLKERLEER-GIKV-VLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEV   80 (208)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHc-CCeE-EEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence            3444  49999999999998877 3222 1122 2566660    00           010              13344


Q ss_pred             HHHHHHcCCeEEEEeccCCch-------------hHhhhc----CCCc-eEEEEeCCCHHHHHHHHHhcCCC-cH---HH
Q psy6613         195 VYELASTLQLVVLDCDTINHP-------------SQLAKT----NLSP-CIVYLKISSPKVLQRLIKSRGKS-QT---RH  252 (510)
Q Consensus       195 I~~vi~sGKi~ILDID~qg~~-------------lq~lks----~l~P-ivIFIkPPS~e~L~~rLr~Rgt~-~~---e~  252 (510)
                      |.-.++.|++||+|=-.-+..             +..++.    .+.| ++||+..| .++-.+|+.+|+.. +.   +.
T Consensus        81 i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~-~e~al~R~~~r~~~~~r~E~~~  159 (208)
T COG0125          81 IKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVP-PEVALERIRKRGELRDRFEKED  159 (208)
T ss_pred             HHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCC-HHHHHHHHHhcCCccchhhhHH
Confidence            566778899999996432100             111111    2355 45555554 56666666666543 21   11


Q ss_pred             --HHHHH-HHHHHHHhcCCCCccEEEe--CCCHHHHHHHHHHHHHHHH
Q psy6613         253 --LNVQM-VAAEKLAQCPQEMFDVILD--ENQLEDACEHIAEYLEAYW  295 (510)
Q Consensus       253 --i~kRL-~aa~eLEq~~~~~FD~VIv--NDdLd~A~~eL~~ileai~  295 (510)
                        ...+. +.-.++...+++  -++++  +.++++-.+++..+|...+
T Consensus       160 ~~f~~kvr~~Y~~la~~~~~--r~~vIda~~~~e~v~~~i~~~l~~~l  205 (208)
T COG0125         160 DEFLEKVREGYLELAAKFPE--RIIVIDASRPLEEVHEEILKILKERL  205 (208)
T ss_pred             HHHHHHHHHHHHHHHhhCCC--eEEEEECCCCHHHHHHHHHHHHHHhh
Confidence              24444 444556655444  23333  4558888888887766554

>PRK07933 thymidylate kinase; Validated

Probab=93.12  E-value=1.3  Score=43.39  Aligned_cols=17  Identities=12%  Similarity=-0.136  Sum_probs=15.7

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      -|+-|+||||+.++|.+
T Consensus         6 EG~dGsGKST~~~~L~~   22 (213)
T PRK07933          6 EGVDGAGKRTLTEALRA   22 (213)
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            79999999999998887

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=93.03  E-value=0.54  Score=43.41  Aligned_cols=20  Identities=5%  Similarity=0.007  Sum_probs=17.2

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|+||||+.+.|-+
T Consensus         4 ~i~~~G~~GsGKst~~~~la~   24 (171)
T PRK03731          4 PLFLVGARGCGKTTVGMALAQ   24 (171)
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            344 89999999999998876

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=92.72  E-value=1.4  Score=49.29  Aligned_cols=138  Identities=12%  Similarity=0.100  Sum_probs=73.0

Q ss_pred             CeE-EecCcCChHHHHHHHhc-CCCCceee----ecCCCchh---hhh----hhc-ccHHHHHHHHHcCCeEEEEec---
Q psy6613         148 MII-ITRVTADISLAKRSLMS-NPSKRAIM----ERSNSRSS---VLT----EVQ-TEIERVYELASTLQLVVLDCD---  210 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~-~P~~F~~s----VshTTR~p---Fe~----~I~-TslesI~~vi~sGKi~ILDID---  210 (510)
                      +++ +|.+|+||||+-+.|-+ .--.|.-.    ...+-++.   |.+    .++ .+.+.+.+++... .||+-+-   
T Consensus         8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~-~~VIs~GGG~   86 (542)
T PRK14021          8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADMLEDF-DGIFSLGGGA   86 (542)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CeEEECCCch
Confidence            455 99999999999998876 21112211    11111111   221    111 4556667766543 4555442   


Q ss_pred             ---cCCchhHhhhc--CCCceEEEEeCCCHHHHHHHHHhcC---CC--cHHHHHHHH-HHHHHHHhcCCCCccEEEeCC-
Q psy6613         211 ---TINHPSQLAKT--NLSPCIVYLKISSPKVLQRLIKSRG---KS--QTRHLNVQM-VAAEKLAQCPQEMFDVILDEN-  278 (510)
Q Consensus       211 ---~qg~~lq~lks--~l~PivIFIkPPS~e~L~~rLr~Rg---t~--~~e~i~kRL-~aa~eLEq~~~~~FD~VIvND-  278 (510)
                         +++  .+.++.  .-.-++||+..+ ++++.+|+....   .-  ...+..+++ +.-..+   |....|++|.++ 
T Consensus        87 v~~~~n--~~~L~~~~~~~g~vv~L~~~-~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R~~~---Y~~~Ad~~i~~~~  160 (542)
T PRK14021         87 PMTPST--QHALASYIAHGGRVVYLDAD-PKEAMERANRGGGRPMLNGDANKRWKKLFKQRDPV---FRQVANVHVHTRG  160 (542)
T ss_pred             hCCHHH--HHHHHHHHhcCCEEEEEECC-HHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHH---HHhhCCEEEECCC
Confidence               233  333322  113478999885 788888875432   11  112223334 333333   334578888754 


Q ss_pred             -CHHHHHHHHHHHHH
Q psy6613         279 -QLEDACEHIAEYLE  292 (510)
Q Consensus       279 -dLd~A~~eL~~ile  292 (510)
                       +.+++++++.+++.
T Consensus       161 ~~~~~~~~~i~~~~~  175 (542)
T PRK14021        161 LTPQAAAKKLIDMVA  175 (542)
T ss_pred             CCHHHHHHHHHHHHH
Confidence             57788888776554

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=92.56  E-value=0.082  Score=45.66  Aligned_cols=17  Identities=12%  Similarity=-0.034  Sum_probs=16.4

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+||||+.+.|.+
T Consensus         5 ~G~~gsGKST~a~~La~   21 (121)
T PF13207_consen    5 SGPPGSGKSTLAKELAE   21 (121)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            89999999999999987

...

>KOG3079|consensus

Probab=92.45  E-value=1.3  Score=43.48  Aligned_cols=136  Identities=8%  Similarity=0.156  Sum_probs=76.7

Q ss_pred             EecCcCChHHHHHHHhc-CCCCce-eee---------c-CCCchhh-hhhhc----c----cHHHHHHHHHcCCe---EE
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRA-IME---------R-SNSRSSV-LTEVQ----T----EIERVYELASTLQL---VV  206 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~-~sV---------s-hTTR~pF-e~~I~----T----slesI~~vi~sGKi---~I  206 (510)
                      +|.+|+||.|.+.++.. ++  |+ ++.         + ++++-.+ .+.+.    .    -++-+++.+.+-..   -|
T Consensus        14 lGGPGsgKgTqC~kiv~ky~--ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~~~~~~fL   91 (195)
T KOG3079|consen   14 LGGPGSGKGTQCEKIVEKYG--FTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSSGDSNGFL   91 (195)
T ss_pred             EcCCCCCcchHHHHHHHHcC--ceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhcCCCCeEE
Confidence            89999999999999998 54  32 111         0 2222211 11111    2    22333333333222   78


Q ss_pred             EEeccCCchhHhhhc---CC---CceEEEEeCCCHHHHHHHHHhcCC------CcHHHHHHHHHHHHH-----HHh--cC
Q psy6613         207 LDCDTINHPSQLAKT---NL---SPCIVYLKISSPKVLQRLIKSRGK------SQTRHLNVQMVAAEK-----LAQ--CP  267 (510)
Q Consensus       207 LDID~qg~~lq~lks---~l---~PivIFIkPPS~e~L~~rLr~Rgt------~~~e~i~kRL~aa~e-----LEq--~~  267 (510)
                      +|--|..  .+....   .+   .-+++|+-.| .++..+|+..||+      ++.+++.+|++.-.+     |+.  .-
T Consensus        92 IDGyPR~--~~q~~~fe~~i~~~~~fvl~fdc~-ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pvi~~~e~k  168 (195)
T KOG3079|consen   92 IDGYPRN--VDQLVEFERKIQGDPDFVLFFDCP-EETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPVIEYYEKK  168 (195)
T ss_pred             ecCCCCC--hHHHHHHHHHhcCCCCEEEEEeCC-HHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHHHHHHHcc
Confidence            8888877  555543   23   3578888886 4555556655554      456889999822211     222  11


Q ss_pred             CCCccEEEeCCCHHHHHHHHHHHHH
Q psy6613         268 QEMFDVILDENQLEDACEHIAEYLE  292 (510)
Q Consensus       268 ~~~FD~VIvNDdLd~A~~eL~~ile  292 (510)
                      ++.. .|=-+.+.|+.|.++...+.
T Consensus       169 g~l~-~i~a~~~~d~Vf~~v~~~id  192 (195)
T KOG3079|consen  169 GKLL-KINAERSVDDVFEEVVTAID  192 (195)
T ss_pred             CcEE-EecCCCCHHHHHHHHHHHhh
Confidence            3333 33356789999999985543

>PRK00023 cmk cytidylate kinase; Provisional

Probab=92.41  E-value=4.2  Score=40.23  Aligned_cols=88  Identities=17%  Similarity=0.210  Sum_probs=47.1

Q ss_pred             CCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhc---C-CCcHHHHHHHHHHHHHHH--hcCC---CCcc
Q psy6613         202 LQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSR---G-KSQTRHLNVQMVAAEKLA--QCPQ---EMFD  272 (510)
Q Consensus       202 GKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~R---g-t~~~e~i~kRL~aa~eLE--q~~~---~~FD  272 (510)
                      ...||++---.|  .-++..  ..+.|||..|.....++|.+.+   | ..+.++..+.|...++.+  ..+.   ..-|
T Consensus       122 ~~~~Vi~GR~~~--~~vl~~--a~~~ifl~a~~e~R~~Rr~~~~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d  197 (225)
T PRK00023        122 EPGLVMDGRDIG--TVVFPD--AELKIFLTASAEERAERRYKELQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAED  197 (225)
T ss_pred             CCCEEEEecChh--eEEeCC--CCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCC
Confidence            346777765333  222222  5678999998766655554432   2 233445555663333322  1111   1234


Q ss_pred             EEEe-CC--CHHHHHHHHHHHHHH
Q psy6613         273 VILD-EN--QLEDACEHIAEYLEA  293 (510)
Q Consensus       273 ~VIv-ND--dLd~A~~eL~~ilea  293 (510)
                      ++++ +.  +++++++.+.+|++.
T Consensus       198 ~l~IDTs~l~~ee~v~~I~~~i~~  221 (225)
T PRK00023        198 ALLLDTSGLSIEEVVEKILALVEE  221 (225)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHH
Confidence            4444 44  578888888877753

>KOG2222|consensus

Probab=92.40  E-value=0.06  Score=58.80  Aligned_cols=48  Identities=21%  Similarity=0.504  Sum_probs=41.2

Q ss_pred             EEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecCh
Q psy6613          50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSP  107 (510)
Q Consensus        50 VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~  107 (510)
                      .||+.||.-.+|+       +|.|+++||+.|+...|+.+|-|..   +|-.|++|.+
T Consensus       551 akal~df~r~ddd-------elgfrkndiitiisekdehcwvgel---nglrgwfpak  598 (848)
T KOG2222|consen  551 AKALHDFAREDDD-------ELGFRKNDIITIISEKDEHCWVGEL---NGLRGWFPAK  598 (848)
T ss_pred             HHHHhhhhhcccc-------ccccccccEEEEeecCCcceeeecc---ccccccchHH
Confidence            4677788777665       5999999999999999999999988   5788999965

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=92.28  E-value=0.66  Score=44.84  Aligned_cols=51  Identities=20%  Similarity=0.166  Sum_probs=35.0

Q ss_pred             ccHHHHHHHHHcCCeEEEEeccCC-ch-hHhhhcCCCceEEEEeCCCHHHHHHH
Q psy6613         190 TEIERVYELASTLQLVVLDCDTIN-HP-SQLAKTNLSPCIVYLKISSPKVLQRL  241 (510)
Q Consensus       190 TslesI~~vi~sGKi~ILDID~qg-~~-lq~lks~l~PivIFIkPPS~e~L~~r  241 (510)
                      .=.+.|++++.+++.+|.-++-.. || ++.++ .+..++|||.|-+.+.+-..
T Consensus       118 ~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik-~~~~v~v~lt~~NR~~i~~~  170 (179)
T COG1618         118 KFREAVEEVLKSGKPLIATLHRRSRHPLVQRIK-KLGGVYVFLTPENRNRILNE  170 (179)
T ss_pred             HHHHHHHHHhcCCCcEEEEEecccCChHHHHhh-hcCCEEEEEccchhhHHHHH
Confidence            345788999999999998888542 12 22222 46678888998887754433

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=92.24  E-value=0.98  Score=41.54  Aligned_cols=90  Identities=13%  Similarity=0.042  Sum_probs=47.8

Q ss_pred             EEecCcCChHHHHHHHhc-C--CCCceeeec-CCCchh------hh-----hhhcccHHHHHHHHHcCCeEEEEeccCCc
Q psy6613         150 IITRVTADISLAKRSLMS-N--PSKRAIMER-SNSRSS------VL-----TEVQTEIERVYELASTLQLVVLDCDTINH  214 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~-~--P~~F~~sVs-hTTR~p------Fe-----~~I~TslesI~~vi~sGKi~ILDID~qg~  214 (510)
                      |+|++|+||||+.+.|.. .  +..-.+.+. ..-|..      +.     +.+..-....+.+.++|.+||+|.-... 
T Consensus         4 i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~~~~-   82 (149)
T cd02027           4 LTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFISPY-   82 (149)
T ss_pred             EEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccCCCC-
Confidence            389999999999998877 3  221122221 111211      00     0000111223346678999999975432 


Q ss_pred             hhHh--hhc---CCCceEEEEeCCCHHHHHHH
Q psy6613         215 PSQL--AKT---NLSPCIVYLKISSPKVLQRL  241 (510)
Q Consensus       215 ~lq~--lks---~l~PivIFIkPPS~e~L~~r  241 (510)
                      ....  ++.   ...-.+||+.+| .+++.+|
T Consensus        83 ~~~R~~~~~l~~~~~~~~i~l~~~-~e~~~~R  113 (149)
T cd02027          83 REDREAARKIIGGGDFLEVFVDTP-LEVCEQR  113 (149)
T ss_pred             HHHHHHHHHhcCCCCEEEEEEeCC-HHHHHHh
Confidence            1111  111   234567888887 6666666

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK12288 GTPase RsgA; Reviewed

Probab=92.18  E-value=0.097  Score=55.30  Aligned_cols=34  Identities=6%  Similarity=-0.024  Sum_probs=24.0

Q ss_pred             EEecCcCChHHHHHHHhcCCCCceeeec-------CCCchh
Q psy6613         150 IITRVTADISLAKRSLMSNPSKRAIMER-------SNSRSS  183 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~~P~~F~~sVs-------hTTR~p  183 (510)
                      |+|+||||||||++.|+.....-.-.||       |||+..
T Consensus       210 ~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~  250 (347)
T PRK12288        210 FVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAA  250 (347)
T ss_pred             EECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeE
Confidence            3999999999999999973222222343       677764

>PRK00098 GTPase RsgA; Reviewed

Probab=92.06  E-value=0.12  Score=53.02  Aligned_cols=32  Identities=9%  Similarity=-0.127  Sum_probs=23.8

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeec-------CCCchh
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMER-------SNSRSS  183 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVs-------hTTR~p  183 (510)
                      +|++|||||||.+.|+. .... .-.|+       ||||..
T Consensus       170 ~G~sgvGKStlin~l~~~~~~~-~g~v~~~~~~G~htT~~~  209 (298)
T PRK00098        170 AGQSGVGKSTLLNALAPDLELK-TGEISEALGRGKHTTTHV  209 (298)
T ss_pred             ECCCCCCHHHHHHHHhCCcCCC-CcceeccCCCCCcccccE
Confidence            99999999999999987 3322 22333       788865

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=92.05  E-value=1.7  Score=46.90  Aligned_cols=143  Identities=10%  Similarity=0.112  Sum_probs=72.8

Q ss_pred             CCCCC-eE-EecCcCChHHHHHHHhcC-CCCceeeecCCCchhhhhh---------------h-cccHHHH-HHHHHcCC
Q psy6613         144 PSPGM-II-ITRVTADISLAKRSLMSN-PSKRAIMERSNSRSSVLTE---------------V-QTEIERV-YELASTLQ  203 (510)
Q Consensus       144 Ps~~R-pI-~GPsGvGKsTL~~rLL~~-P~~F~~sVshTTR~pFe~~---------------I-~TslesI-~~vi~sGK  203 (510)
                      |++.+ ++ +|++|+|||||.+.|..+ .-.   .++--.|.-.++.               + .....++ ..+....+
T Consensus       216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~---~v~E~~R~~~~~~~~~~~~~l~~~D~~~ia~~~~~~~~~~~~~a~~  292 (399)
T PRK08099        216 PFFVRTVAILGGESSGKSTLVNKLANIFNTT---SAWEYGREYVFSHLGGDEMALQYSDYDKIALGHAQYIDFAVKYANK  292 (399)
T ss_pred             hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCC---eeeeccHHHHHHhhcCCccCCChhhhHHHHhhhHHHHHHHHHhcCC
Confidence            34444 43 999999999999999872 211   1222233221110               0 0111122 23344588


Q ss_pred             eEEEEeccCCchhHh-hhc---CCCc----------e-EEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHH-HHhc
Q psy6613         204 LVVLDCDTINHPSQL-AKT---NLSP----------C-IVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEK-LAQC  266 (510)
Q Consensus       204 i~ILDID~qg~~lq~-lks---~l~P----------i-vIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~e-LEq~  266 (510)
                      ++++|.|.-.  ... .+.   .-.|          + .||+.+|+..-...=++..   ..++....+ ..-.+ ++. 
T Consensus       293 ~~f~Dt~~~~--t~~y~~~y~g~~~p~l~~~~~~~ryDlvlll~pd~Pwv~DGlR~~---~D~e~R~~f~~~l~~~l~~-  366 (399)
T PRK08099        293 VAFIDTDFVT--TQAFCKKYEGREHPFVQALIDEYRFDLTILLENNTPWVADGLRSL---GSSVDRKRFQNLLKEMLKE-  366 (399)
T ss_pred             eEEEeCChHH--HHHHHHHhCCCCCHHHHHHHHhCCCCEEEEcCCCCCcccCCcccC---CCHHHHHHHHHHHHHHHHH-
Confidence            9999998644  221 111   0011          1 4566655432222211111   123333344 22222 333 


Q ss_pred             CCCCccEEEeC-CCHHHHHHHHHHHHHHHHHh
Q psy6613         267 PQEMFDVILDE-NQLEDACEHIAEYLEAYWRA  297 (510)
Q Consensus       267 ~~~~FD~VIvN-DdLd~A~~eL~~ileai~~a  297 (510)
                        ..+.+++++ .+.++=+.+-.++|+.+...
T Consensus       367 --~g~~~v~l~~g~~~eR~~~a~~~i~~~l~~  396 (399)
T PRK08099        367 --NNIEYVHVESPDYDKRYLRCVELVDQMLGE  396 (399)
T ss_pred             --cCCCEEEECCCCHHHHHHHHHHHHHHHhhc
Confidence              467899995 79888888888777776554

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=91.99  E-value=0.15  Score=44.02  Aligned_cols=33  Identities=18%  Similarity=0.128  Sum_probs=24.2

Q ss_pred             EEecCcCChHHHHHHHhc-CCCCceeeecCCCchh
Q psy6613         150 IITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS  183 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p  183 (510)
                      |+|++|+|||||.+.|+. +. .-....+.||+.+
T Consensus         4 iiG~~~~GKSTlin~l~~~~~-~~~~~~~~~T~~~   37 (116)
T PF01926_consen    4 IIGRPNVGKSTLINALTGKKL-AKVSNIPGTTRDP   37 (116)
T ss_dssp             EEESTTSSHHHHHHHHHTSTS-SEESSSTTSSSSE
T ss_pred             EECCCCCCHHHHHHHHhcccc-ccccccccceeee
Confidence            399999999999999997 32 1233346777765

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=91.69  E-value=0.41  Score=48.37  Aligned_cols=18  Identities=17%  Similarity=0.170  Sum_probs=16.8

Q ss_pred             EEecCcCChHHHHHHHhc
Q psy6613         150 IITRVTADISLAKRSLMS  167 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~  167 (510)
                      |+||+|+|||||.+++.+
T Consensus        21 I~G~~G~GKTTLlr~I~n   38 (249)
T cd01128          21 IVAPPKAGKTTLLQSIAN   38 (249)
T ss_pred             EECCCCCCHHHHHHHHHh
Confidence            499999999999999997

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=91.63  E-value=0.13  Score=51.46  Aligned_cols=17  Identities=12%  Similarity=-0.091  Sum_probs=16.4

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|+||||||||++.|+.
T Consensus       126 ~G~sgvGKStLiN~L~~  142 (245)
T TIGR00157       126 AGQSGVGKSSLINALDP  142 (245)
T ss_pred             ECCCCCCHHHHHHHHhh
Confidence            99999999999999996

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK06620 hypothetical protein; Validated

Probab=91.39  E-value=0.67  Score=45.49  Aligned_cols=95  Identities=7%  Similarity=0.077  Sum_probs=51.4

Q ss_pred             EEecCcCChHHHHHHHhcCCCCceeeecCCCchh-------hhhhhc----ccH-HHHHHHHHcCCeEEEEeccCCchh-
Q psy6613         150 IITRVTADISLAKRSLMSNPSKRAIMERSNSRSS-------VLTEVQ----TEI-ERVYELASTLQLVVLDCDTINHPS-  216 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p-------Fe~~I~----Tsl-esI~~vi~sGKi~ILDID~qg~~l-  216 (510)
                      +.||+|+|||+|.+-+.+.+..+...........       +..+|+    ..+ .-+..+.+.|+.+|+-.+....-+ 
T Consensus        49 l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~~~~~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~  128 (214)
T PRK06620         49 IKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEILEKYNAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFT  128 (214)
T ss_pred             EECCCCCCHHHHHHHHHhccCCEEcchhhhchhHHhcCCEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccc
Confidence            3999999999999865554433221111001100       112222    112 223344578888888887433112 


Q ss_pred             -HhhhcCC-CceEEEEeCCCHHHHHHHHHh
Q psy6613         217 -QLAKTNL-SPCIVYLKISSPKVLQRLIKS  244 (510)
Q Consensus       217 -q~lks~l-~PivIFIkPPS~e~L~~rLr~  244 (510)
                       .-+++-+ .-.++=|.||+.+.+...+++
T Consensus       129 l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k  158 (214)
T PRK06620        129 LPDLSSRIKSVLSILLNSPDDELIKILIFK  158 (214)
T ss_pred             hHHHHHHHhCCceEeeCCCCHHHHHHHHHH
Confidence             2244433 355778888888776666643

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=91.38  E-value=0.13  Score=44.00  Aligned_cols=20  Identities=15%  Similarity=0.122  Sum_probs=18.0

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|+.|||||||+++|+.
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~   21 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCG   21 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHhc
Confidence            345 99999999999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=91.33  E-value=0.24  Score=42.67  Aligned_cols=18  Identities=11%  Similarity=0.043  Sum_probs=16.8

Q ss_pred             EEecCcCChHHHHHHHhc
Q psy6613         150 IITRVTADISLAKRSLMS  167 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~  167 (510)
                      +.||+|+|||++.+.|.+
T Consensus         3 l~G~~G~GKT~l~~~la~   20 (132)
T PF00004_consen    3 LHGPPGTGKTTLARALAQ   20 (132)
T ss_dssp             EESSTTSSHHHHHHHHHH
T ss_pred             EECcCCCCeeHHHHHHHh
Confidence            489999999999999988

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK12289 GTPase RsgA; Reviewed

Probab=91.24  E-value=0.16  Score=53.81  Aligned_cols=33  Identities=12%  Similarity=-0.022  Sum_probs=23.6

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeec-------CCCchh
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMER-------SNSRSS  183 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVs-------hTTR~p  183 (510)
                      +|+||||||||++.|+.....-...||       ||||..
T Consensus       178 iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~  217 (352)
T PRK12289        178 AGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHV  217 (352)
T ss_pred             EeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCcee
Confidence            999999999999999962222223344       588865

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=91.23  E-value=2.1  Score=42.07  Aligned_cols=97  Identities=14%  Similarity=0.187  Sum_probs=57.0

Q ss_pred             HHHHHHHcCCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCcc
Q psy6613         194 RVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFD  272 (510)
Q Consensus       194 sI~~vi~sGKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD  272 (510)
                      .+.+..+++ .|++|+..--   +.-....-.++|.|-.|.--.++ |+..|+..+.+....++ .+...-|..  ..=|
T Consensus        98 ~~~~~~~~~-~~~~eiplL~---e~~~~~~~d~Vi~V~a~~e~r~e-Rl~~R~~~~~e~~~~~~~~Q~~~~ek~--~~ad  170 (201)
T COG0237          98 VVIDGARSP-YVVLEIPLLF---EAGGEKYFDKVIVVYAPPEIRLE-RLMKRDGLDEEDAEARLASQRDLEEKL--ALAD  170 (201)
T ss_pred             HHHHHhhCC-ceEEEchHHH---hccccccCCEEEEEECCHHHHHH-HHHhcCCCCHHHHHHHHHhcCCHHHHH--hhcC
Confidence            344445555 8999986521   11111223467777776554444 55566656656666666 333222332  4558


Q ss_pred             EEEeCC-CHHHHHHHHHHHHHHHHHh
Q psy6613         273 VILDEN-QLEDACEHIAEYLEAYWRA  297 (510)
Q Consensus       273 ~VIvND-dLd~A~~eL~~ileai~~a  297 (510)
                      +||.|| ++++.++++...+..+...
T Consensus       171 ~vi~n~~~i~~l~~~i~~~~~~~~~~  196 (201)
T COG0237         171 VVIDNDGSIENLLEQIEKLLKELLGL  196 (201)
T ss_pred             ChhhcCCCHHHHHHHHHHHHHHHHhh
Confidence            999875 5888888988777776654

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=91.17  E-value=1.3  Score=44.24  Aligned_cols=73  Identities=16%  Similarity=0.223  Sum_probs=38.9

Q ss_pred             CCCceEEEEeCCCHHHHHHHHH----hcCCCcHHHHHHHH-HHHHHHHhc----CCCCccEEEe-CCCHHHHHHHHHHHH
Q psy6613         222 NLSPCIVYLKISSPKVLQRLIK----SRGKSQTRHLNVQM-VAAEKLAQC----PQEMFDVILD-ENQLEDACEHIAEYL  291 (510)
Q Consensus       222 ~l~PivIFIkPPS~e~L~~rLr----~Rgt~~~e~i~kRL-~aa~eLEq~----~~~~FD~VIv-NDdLd~A~~eL~~il  291 (510)
                      .+.-+-|||-.|.-..|.+|+.    .||.+-+ ....+. ....-+...    ..++=|.+|- ...=..|+..|...|
T Consensus       126 ~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e-~vi~qy~~~vkp~~~~fIeptk~~ADiiip~~~~n~vav~~l~~~I  204 (218)
T COG0572         126 DLMDLKIFVDTDADVRLIRRIKRDVQERGRDLE-SVIEQYVKTVRPMYEQFIEPTKKYADIIIPSGGKNEVAVDLLQAKI  204 (218)
T ss_pred             hhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHH-HHHHHHHHhhChhhhhccCcccccceEEeecCCcceeehhHHHHHH
Confidence            4556789999998777777764    4665543 333343 222222221    1344566663 223344555566555


Q ss_pred             HHHH
Q psy6613         292 EAYW  295 (510)
Q Consensus       292 eai~  295 (510)
                      +.++
T Consensus       205 ~~~~  208 (218)
T COG0572         205 ASSL  208 (218)
T ss_pred             HHHh
Confidence            5544

>KOG4773|consensus

Probab=91.09  E-value=0.049  Score=57.34  Aligned_cols=48  Identities=10%  Similarity=0.403  Sum_probs=41.3

Q ss_pred             EEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecCh
Q psy6613          50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSP  107 (510)
Q Consensus        50 VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~  107 (510)
                      .+|.|||.+...       .+|.|.+|||..++..++.+||.|+.   .+.+|++|-.
T Consensus       178 ~~a~~df~gns~-------~EL~l~agdV~~~~~r~ek~W~~gk~---R~~~g~yp~s  225 (386)
T KOG4773|consen  178 AEASFDFPGNSK-------LELNLVAGDVEFLLSRDEKYWLLGKV---RGLTGYYPDS  225 (386)
T ss_pred             HHhhccCCCCcc-------ceeeeehhhHHHHHhhcccceeeeee---ccccccccHH
Confidence            568899999875       47999999999999999999999987   4678998854

>PLN02199 shikimate kinase

Probab=91.02  E-value=2.5  Score=44.26  Aligned_cols=139  Identities=8%  Similarity=0.017  Sum_probs=73.6

Q ss_pred             eE-EecCcCChHHHHHHHhc-CCCCceee---ecC-CCchh----hhh---hhc--ccHHHHHHHHHcCCeEEEEeccCC
Q psy6613         149 II-ITRVTADISLAKRSLMS-NPSKRAIM---ERS-NSRSS----VLT---EVQ--TEIERVYELASTLQLVVLDCDTIN  213 (510)
Q Consensus       149 pI-~GPsGvGKsTL~~rLL~-~P~~F~~s---Vsh-TTR~p----Fe~---~I~--TslesI~~vi~sGKi~ILDID~qg  213 (510)
                      ++ +|.+|+||||+.+.|-+ .--.|.-+   +-+ ++...    |+.   ...  .+.+.+.++.... .||+-+-. |
T Consensus       105 I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~-~~VIStGG-G  182 (303)
T PLN02199        105 MYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRY-QVVVSTGG-G  182 (303)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcC-CEEEECCC-c
Confidence            44 99999999999998875 21112211   111 11111    211   111  4555666665544 56665533 2


Q ss_pred             ch-----hHhhhcCCCceEEEEeCCCHHHHHHHHHh-----cCCC---cHH------HHHHHH-HHHHHHHhcCCCCccE
Q psy6613         214 HP-----SQLAKTNLSPCIVYLKISSPKVLQRLIKS-----RGKS---QTR------HLNVQM-VAAEKLAQCPQEMFDV  273 (510)
Q Consensus       214 ~~-----lq~lks~l~PivIFIkPPS~e~L~~rLr~-----Rgt~---~~e------~i~kRL-~aa~eLEq~~~~~FD~  273 (510)
                      .+     .+.++   .-++||+..| +++|.+|+..     |..-   +.+      ....+| +.-..+   |.. -|+
T Consensus       183 ~V~~~~n~~~L~---~G~vV~Ldas-~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~pl---Y~~-Ad~  254 (303)
T PLN02199        183 AVIRPINWKYMH---KGISIWLDVP-LEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEA---YTN-ANA  254 (303)
T ss_pred             ccCCHHHHHHHh---CCeEEEEECC-HHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHHHH---HHh-CCE
Confidence            01     11122   4688999986 7888888874     2211   111      112222 222222   333 688


Q ss_pred             EEe--------------CCCHHHHHHHHHHHHHHHHHh
Q psy6613         274 ILD--------------ENQLEDACEHIAEYLEAYWRA  297 (510)
Q Consensus       274 VIv--------------NDdLd~A~~eL~~ileai~~a  297 (510)
                      +|.              +-+.++.+.++.+.+..+.+-
T Consensus       255 ~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~~  292 (303)
T PLN02199        255 RVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEK  292 (303)
T ss_pred             EEecccccccccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence            887              455667777877777766653

>KOG3601|consensus

Probab=91.02  E-value=0.048  Score=53.96  Aligned_cols=48  Identities=29%  Similarity=0.443  Sum_probs=39.0

Q ss_pred             EeeccCCCCCCCCCCCCccccccCCceEEEEeec-CCCceEEEEccCCCceeeecChhH
Q psy6613          52 TNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY-DSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        52 AlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~-d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      |++++-...++       +|+|.+||+|.|++.+ +.||..+..   +|..|+||++.-
T Consensus         5 a~n~f~a~i~d-------ELsFlkg~~lk~l~~~d~~nw~~ael---~g~~g~~P~Nai   53 (222)
T KOG3601|consen    5 AKNDFLAGIRD-------ELSFLKGDNLKILNMEDDINWYKAEL---DGPEGFIPKNAI   53 (222)
T ss_pred             hhhhhhhcCcc-------cceeecCCceEecchHHhhhhhhHhh---cCccccCccccc
Confidence            56777777665       5999999999999985 458999987   568899998765

>cd01858 NGP_1 NGP-1

Probab=90.97  E-value=0.16  Score=46.46  Aligned_cols=34  Identities=12%  Similarity=-0.037  Sum_probs=25.6

Q ss_pred             EEecCcCChHHHHHHHhcCCCCceeeecCCCchh
Q psy6613         150 IITRVTADISLAKRSLMSNPSKRAIMERSNSRSS  183 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p  183 (510)
                      ++|++|||||||.+.|+....-....+|.|||..
T Consensus       107 ~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~  140 (157)
T cd01858         107 FIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVW  140 (157)
T ss_pred             EEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeE
Confidence            3999999999999999873323444567778764

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=90.90  E-value=3.3  Score=42.81  Aligned_cols=93  Identities=10%  Similarity=0.108  Sum_probs=58.6

Q ss_pred             HHHHHHcCCeEEEEeccCCchhHhhhc-C--CCceEEEEeCCCHHHHHHHHHhcCCCcH-----H------HHHHHH-HH
Q psy6613         195 VYELASTLQLVVLDCDTINHPSQLAKT-N--LSPCIVYLKISSPKVLQRLIKSRGKSQT-----R------HLNVQM-VA  259 (510)
Q Consensus       195 I~~vi~sGKi~ILDID~qg~~lq~lks-~--l~PivIFIkPPS~e~L~~rLr~Rgt~~~-----e------~i~kRL-~a  259 (510)
                      |.+.+..|..+|++-=.--  =.+++. .  .+.+..|+..++.+..+.|...|...+.     .      ...+.| +-
T Consensus       179 I~RAi~eG~~lIIEGvHlV--Pg~i~~~~~~~n~~~~~l~i~dee~Hr~RF~~R~~~t~~~rp~~Ryl~yf~EiR~I~Dy  256 (299)
T COG2074         179 IERAIEEGEDLIIEGVHLV--PGLIKEEALGNNVFMFMLYIADEELHRERFYDRIRYTHASRPGGRYLEYFKEIRTIHDY  256 (299)
T ss_pred             HHHHHhcCcceEEEeeeec--cccccHhhhccceEEEEEEeCCHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence            5678899999999864322  123343 2  3456788889999999999987765431     1      111122 22


Q ss_pred             HHHHHhcCCCCccE-EEeCCCHHHHHHHHHHHHHH
Q psy6613         260 AEKLAQCPQEMFDV-ILDENQLEDACEHIAEYLEA  293 (510)
Q Consensus       260 a~eLEq~~~~~FD~-VIvNDdLd~A~~eL~~ilea  293 (510)
                      ..+..    ..|+. ||.|+|++.|..++.++|..
T Consensus       257 l~~~A----re~gVPvI~n~di~etv~~il~~i~~  287 (299)
T COG2074         257 LVERA----REHGVPVIENDDIDETVDRILEDIRK  287 (299)
T ss_pred             HHHHH----HhcCCCeeccccHHHHHHHHHHHHHH
Confidence            22222    23343 67899999999999877643

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=90.90  E-value=0.93  Score=46.26  Aligned_cols=55  Identities=22%  Similarity=0.239  Sum_probs=31.0

Q ss_pred             CCceEEEEeCCCHHHHHHHH----HhcCCCcHHHHHHHHHHHHHHHhc----CCCCccEEEeCC
Q psy6613         223 LSPCIVYLKISSPKVLQRLI----KSRGKSQTRHLNVQMVAAEKLAQC----PQEMFDVILDEN  278 (510)
Q Consensus       223 l~PivIFIkPPS~e~L~~rL----r~Rgt~~~e~i~kRL~aa~eLEq~----~~~~FD~VIvND  278 (510)
                      +.-+.|||.+|.-..+++++    +.||. +.+++..++.+.......    ....-|+||.++
T Consensus       115 ~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~-s~e~v~~~i~~r~~~~~~~I~P~~~~ADvVI~~~  177 (273)
T cd02026         115 LLDFSVYLDISDEVKFAWKIQRDMAERGH-SLEDVLASIEARKPDFEAYIDPQKQYADVVIQVL  177 (273)
T ss_pred             hccEEEEEECChhHHHHHHHHHHHHHhCC-CHHHHHHHHHhhchhHHHHhccccccCcEEEEcc
Confidence            45688999999877655433    23453 445566666322211111    135668888554

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR00436 era GTP-binding protein Era

Probab=90.80  E-value=0.17  Score=50.87  Aligned_cols=37  Identities=14%  Similarity=0.142  Sum_probs=26.8

Q ss_pred             CCeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh
Q psy6613         147 GMII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS  183 (510)
Q Consensus       147 ~RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p  183 (510)
                      |++. +|++|||||||.+.|+...-......++|||..
T Consensus         1 g~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~   38 (270)
T TIGR00436         1 GFVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNR   38 (270)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCc
Confidence            3455 999999999999999972112233467899875

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PLN02840 tRNA dimethylallyltransferase

Probab=90.78  E-value=0.36  Score=52.50  Aligned_cols=61  Identities=13%  Similarity=-0.015  Sum_probs=42.0

Q ss_pred             EecCcCChHHHHHHHhc-CCCC--------ceeeecCCCchhhhhh---h--------------------cccHHHHHHH
Q psy6613         151 ITRVTADISLAKRSLMS-NPSK--------RAIMERSNSRSSVLTE---V--------------------QTEIERVYEL  198 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~--------F~~sVshTTR~pFe~~---I--------------------~TslesI~~v  198 (510)
                      +||+|+|||||...|.+ ....        +..-.+.+|.+|-.++   |                    ..-.+.|.++
T Consensus        27 ~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~~~A~~~I~~i  106 (421)
T PLN02840         27 SGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFFDDARRATQDI  106 (421)
T ss_pred             ECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHHHHHHHHHHHH
Confidence            89999999999999987 4322        2223445677771111   0                    0467888999


Q ss_pred             HHcCCeEEEEecc
Q psy6613         199 ASTLQLVVLDCDT  211 (510)
Q Consensus       199 i~sGKi~ILDID~  211 (510)
                      .+.|+++||---.
T Consensus       107 ~~rgkiPIvVGGT  119 (421)
T PLN02840        107 LNRGRVPIVAGGT  119 (421)
T ss_pred             HhcCCCEEEEcCc
Confidence            9999999985533

>PLN02165 adenylate isopentenyltransferase

Probab=90.74  E-value=1.6  Score=46.18  Aligned_cols=22  Identities=9%  Similarity=0.083  Sum_probs=18.2

Q ss_pred             CCCeE--EecCcCChHHHHHHHhc
Q psy6613         146 PGMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       146 ~~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      .+.+|  +||+|+|||+|...|..
T Consensus        42 ~g~iivIiGPTGSGKStLA~~LA~   65 (334)
T PLN02165         42 KDKVVVIMGATGSGKSRLSVDLAT   65 (334)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHH
Confidence            44444  99999999999998877

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=90.55  E-value=0.36  Score=45.46  Aligned_cols=39  Identities=33%  Similarity=0.590  Sum_probs=29.9

Q ss_pred             CCcceEEeCCCCCCchhHHHHHHHHHHHHhhhcCCcEEEEEEec
Q psy6613         414 SMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTA  457 (510)
Q Consensus       414 ~~rp~~~~gp~~~~~~~~~~m~~al~~~l~~~f~~~i~~~~~~~  457 (510)
                      ..|||||+|||-.|   .+.+.++|+.-+.++|.  ..|+..|.
T Consensus         1 ~~r~ivl~Gpsg~G---K~~l~~~L~~~~~~~~~--~~v~~TTR   39 (183)
T PF00625_consen    1 KRRPIVLVGPSGSG---KSTLAKRLIQEFPDKFG--RVVSHTTR   39 (183)
T ss_dssp             SSSEEEEESSTTSS---HHHHHHHHHHHSTTTEE--EEEEEESS
T ss_pred             CCCEEEEECCCCCC---HHHHHHHHHHhcccccc--cceeeccc
Confidence            36999999999999   67777777777777773  45556554

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=90.39  E-value=4.2  Score=38.38  Aligned_cols=85  Identities=14%  Similarity=0.205  Sum_probs=50.3

Q ss_pred             EecCcCChHHHHHHHh-c-CCC-CceeeecCCCchhhhhh--------hc---------c----cHHHHHHHHHcC----
Q psy6613         151 ITRVTADISLAKRSLM-S-NPS-KRAIMERSNSRSSVLTE--------VQ---------T----EIERVYELASTL----  202 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL-~-~P~-~F~~sVshTTR~pFe~~--------I~---------T----slesI~~vi~sG----  202 (510)
                      .|..|+||||+.++|+ . ..+ +.++.+-.--....++.        +.         |    -...+.++....    
T Consensus         6 ~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~~~~   85 (178)
T PF02492_consen    6 TGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYEERP   85 (178)
T ss_dssp             EESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCHGC-
T ss_pred             EcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcCCCc
Confidence            8999999999999999 4 333 33333332222221110        00         2    346777777777    


Q ss_pred             CeEEEEeccCCchhHhh------hc--CCCceEEEEeCCCH
Q psy6613         203 QLVVLDCDTINHPSQLA------KT--NLSPCIVYLKISSP  235 (510)
Q Consensus       203 Ki~ILDID~qg~~lq~l------ks--~l~PivIFIkPPS~  235 (510)
                      ..+|++..--++|..++      ..  .+.+++.-|-+.++
T Consensus        86 d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~  126 (178)
T PF02492_consen   86 DRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNF  126 (178)
T ss_dssp             SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTH
T ss_pred             CEEEECCccccccchhhhccccccccccccceeEEeccccc
Confidence            66777776666665552      11  45667777777776

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=90.34  E-value=0.22  Score=47.41  Aligned_cols=17  Identities=12%  Similarity=0.092  Sum_probs=16.4

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|+||||||||++.|+.
T Consensus        41 ~G~SGvGKSSLiN~L~~   57 (161)
T PF03193_consen   41 LGQSGVGKSSLINALLP   57 (161)
T ss_dssp             ECSTTSSHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            99999999999999997

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR00017 cmk cytidylate kinase

Probab=90.01  E-value=6.8  Score=38.68  Aligned_cols=89  Identities=16%  Similarity=0.142  Sum_probs=46.8

Q ss_pred             HHHHHHcCCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCC---C-cHHHHHHHHHHHHHH------H
Q psy6613         195 VYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGK---S-QTRHLNVQMVAAEKL------A  264 (510)
Q Consensus       195 I~~vi~sGKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt---~-~~e~i~kRL~aa~eL------E  264 (510)
                      ++++++.| .||+|---.|  .-++.  -..+.||+..|-....++|......   + +.+++.+.+..-+++      .
T Consensus       114 qr~~a~~~-~~Vi~Gr~~~--~~v~~--~a~~~ifl~a~~~~Ra~Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~  188 (217)
T TIGR00017       114 QQALAKND-GIIADGRDIG--TVVFP--NAEVKIFLDASVEERAKRRYKQLQIKGNEVNFEELLAEIKERDDRDSNREVA  188 (217)
T ss_pred             HHHHhhcC-CEEEEEcCcc--eEEeC--CCCEEEEEECCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhcccccccC
Confidence            44445444 6888876545  12222  2568899999887777766544321   2 235555555333222      1


Q ss_pred             hcCCCCccEEEeCCC--HHHHHHHHH
Q psy6613         265 QCPQEMFDVILDENQ--LEDACEHIA  288 (510)
Q Consensus       265 q~~~~~FD~VIvNDd--Ld~A~~eL~  288 (510)
                      -.....++.+|.+++  ++++++.+.
T Consensus       189 ~~~~a~~~i~Idts~l~ieevv~~I~  214 (217)
T TIGR00017       189 PLKKADDALYLDTSNLSIDEVVEKIL  214 (217)
T ss_pred             cccCCCCeEEEECCCCCHHHHHHHHH
Confidence            111233445555443  666666665

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=89.92  E-value=0.72  Score=45.39  Aligned_cols=17  Identities=24%  Similarity=0.214  Sum_probs=16.4

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+||||+.+.+..
T Consensus        49 ~G~~G~GKTtl~~~l~~   65 (269)
T TIGR03015        49 TGEVGAGKTTLIRNLLK   65 (269)
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            99999999999999987

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=89.54  E-value=1.4  Score=47.34  Aligned_cols=19  Identities=11%  Similarity=0.050  Sum_probs=16.8

Q ss_pred             eEEecCcCChHHHHHHHhc
Q psy6613         149 IIITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~  167 (510)
                      +|.||+|+||||+.+.|.+
T Consensus        40 lL~GppGtGKTtLA~~ia~   58 (413)
T PRK13342         40 ILWGPPGTGKTTLARIIAG   58 (413)
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3499999999999998887

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=89.51  E-value=1.8  Score=47.93  Aligned_cols=89  Identities=19%  Similarity=0.194  Sum_probs=46.4

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecC------CCchh---hhh---hhc--ccHHHHHHHHHcCCeEEEEec------
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERS------NSRSS---VLT---EVQ--TEIERVYELASTLQLVVLDCD------  210 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVsh------TTR~p---Fe~---~I~--TslesI~~vi~sGKi~ILDID------  210 (510)
                      +|++|+||||+.+.|-+.- .+.+.-..      +-.+.   |..   ...  .+.+.+++++..+ .+|+.+.      
T Consensus         6 ~G~~GsGKSTv~~~La~~l-g~~~id~D~~i~~~~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~-~~Vis~Gggvv~~   83 (488)
T PRK13951          6 VGMMGSGKSTIGKRVSEVL-DLQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERD-NVVVATGGGVVID   83 (488)
T ss_pred             ECCCCCCHHHHHHHHHHHc-CCeEEECcHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcC-CEEEECCCccccC
Confidence            8999999999999887521 12211111      00000   111   001  3445555555443 4555543      


Q ss_pred             cCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCC
Q psy6613         211 TINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGK  247 (510)
Q Consensus       211 ~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt  247 (510)
                      ..+  .+.++.   -.+||+.. +.+++.+|+..++.
T Consensus        84 ~~~--r~~l~~---~~vI~L~a-s~e~l~~Rl~~~~R  114 (488)
T PRK13951         84 PEN--RELLKK---EKTLFLYA-PPEVLMERVTTENR  114 (488)
T ss_pred             hHH--HHHHhc---CeEEEEEC-CHHHHHHHhccCCC
Confidence            112  333432   23666555 48999999976543

>KOG3632|consensus

Probab=89.44  E-value=0.21  Score=58.57  Aligned_cols=58  Identities=17%  Similarity=0.300  Sum_probs=46.2

Q ss_pred             EEeeccCCCCCCCCCCCCccccccCCceEEEEeec-CCCceEEEEccCCCceeeecChhHHH
Q psy6613          51 RTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY-DSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        51 RAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~-d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      -|.|||++++.+--=--++.|.|..|||+.|..+. |++++-|.+   +|..|++||.-+.+
T Consensus      1248 vaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGel---ngqkglvpsnfle~ 1306 (1335)
T KOG3632|consen 1248 VAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGEL---NGQKGLVPSNFLEA 1306 (1335)
T ss_pred             hhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCccccccc---CCccCccccccccC
Confidence            38899999987644345689999999999999985 556777766   57899999987655

>COG1162 Predicted GTPases [General function prediction only]

Probab=89.17  E-value=0.23  Score=51.79  Aligned_cols=17  Identities=12%  Similarity=0.108  Sum_probs=16.1

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|+||||||||.++|..
T Consensus       170 ~GqSGVGKSSLiN~L~p  186 (301)
T COG1162         170 LGQSGVGKSTLINALLP  186 (301)
T ss_pred             ECCCCCcHHHHHHhhCc
Confidence            99999999999999985

>cd04163 Era Era subfamily

Probab=89.12  E-value=0.27  Score=43.07  Aligned_cols=21  Identities=14%  Similarity=0.210  Sum_probs=18.0

Q ss_pred             CeE-EecCcCChHHHHHHHhcC
Q psy6613         148 MII-ITRVTADISLAKRSLMSN  168 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~~  168 (510)
                      ++. +|+.|+||||+.++|+..
T Consensus         5 ~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           5 FVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            344 999999999999999873

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=88.95  E-value=2.2  Score=48.42  Aligned_cols=143  Identities=13%  Similarity=0.080  Sum_probs=69.4

Q ss_pred             CCeE--EecCcCChHHHHHHHhcC--CCC--ceeeecCCCchhhh-------h----hhcccHHHHHHHHHcCCeEEEEe
Q psy6613         147 GMII--ITRVTADISLAKRSLMSN--PSK--RAIMERSNSRSSVL-------T----EVQTEIERVYELASTLQLVVLDC  209 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~~--P~~--F~~sVshTTR~pFe-------~----~I~TslesI~~vi~sGKi~ILDI  209 (510)
                      +.+|  .|.+|+||||+.+.|...  ...  ..+.-..+-|+.+.       +    .+..-.+......+.|.++|+|.
T Consensus       460 ~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a~~~~~~G~~Vivda  539 (632)
T PRK05506        460 PATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMADAGLIVLVSF  539 (632)
T ss_pred             cEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            4444  899999999999887752  111  11222233333211       0    01112233344568899999997


Q ss_pred             ccCC-chhHhhhcCC--Cc-eEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC--CCCccEEEeCC--CHH
Q psy6613         210 DTIN-HPSQLAKTNL--SP-CIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCP--QEMFDVILDEN--QLE  281 (510)
Q Consensus       210 D~qg-~~lq~lks~l--~P-ivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~--~~~FD~VIvND--dLd  281 (510)
                      -..- ...+..+...  .+ ++||+..| .+++.+|. .|+--... ....+.....+...|  +..-|++|.++  +++
T Consensus       540 ~~~~~~~R~~~r~l~~~~~~~~v~L~~~-~e~~~~R~-~r~L~~~~-~~~~l~~l~~~r~~y~~P~~a~~~Id~~~~s~~  616 (632)
T PRK05506        540 ISPFREERELARALHGEGEFVEVFVDTP-LEVCEARD-PKGLYAKA-RAGEIKNFTGIDSPYEAPENPELRLDTTGRSPE  616 (632)
T ss_pred             CCCCHHHHHHHHHhcccCCeEEEEECCC-HHHHHhhC-Ccchhhhc-cccccccccccccCCCCCCCCeEEEeCCCCCHH
Confidence            4211 0112222212  24 56666665 67777773 23321100 000110000111112  24467888764  588


Q ss_pred             HHHHHHHHHHH
Q psy6613         282 DACEHIAEYLE  292 (510)
Q Consensus       282 ~A~~eL~~ile  292 (510)
                      ++++++.++|.
T Consensus       617 e~v~~Ii~~l~  627 (632)
T PRK05506        617 ELAEQVLELLR  627 (632)
T ss_pred             HHHHHHHHHHH
Confidence            88888875553

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=88.84  E-value=0.78  Score=39.00  Aligned_cols=18  Identities=6%  Similarity=0.062  Sum_probs=16.6

Q ss_pred             EEecCcCChHHHHHHHhc
Q psy6613         150 IITRVTADISLAKRSLMS  167 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~  167 (510)
                      |.||+|+|||++.+.+..
T Consensus        24 i~G~~G~GKT~l~~~i~~   41 (151)
T cd00009          24 LYGPPGTGKTTLARAIAN   41 (151)
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            399999999999999887

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK09087 hypothetical protein; Validated

Probab=88.77  E-value=1.5  Score=43.47  Aligned_cols=93  Identities=8%  Similarity=0.076  Sum_probs=53.5

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeec--CCCch-------h-hhhhhc-------ccHHHHHHHHHcCCeEEEEeccCC
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMER--SNSRS-------S-VLTEVQ-------TEIERVYELASTLQLVVLDCDTIN  213 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVs--hTTR~-------p-Fe~~I~-------TslesI~~vi~sGKi~ILDID~qg  213 (510)
                      .||+|+|||+|.+-+.+... ..+.-+  .+...       . ...+++       .-.+.+..+.+.|+.+|+-.+...
T Consensus        50 ~G~~GsGKThLl~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p  128 (226)
T PRK09087         50 AGPVGSGKTHLASIWREKSD-ALLIHPNEIGSDAANAAAEGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWP  128 (226)
T ss_pred             ECCCCCCHHHHHHHHHHhcC-CEEecHHHcchHHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCCh
Confidence            99999999999997765321 111111  01100       0 001111       223445566677999999887432


Q ss_pred             ch----hHhhhcCC-CceEEEEeCCCHHHHHHHHHh
Q psy6613         214 HP----SQLAKTNL-SPCIVYLKISSPKVLQRLIKS  244 (510)
Q Consensus       214 ~~----lq~lks~l-~PivIFIkPPS~e~L~~rLr~  244 (510)
                      .-    ..-+++.+ ...+|=|.||+.+.+...+++
T Consensus       129 ~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~  164 (226)
T PRK09087        129 SSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK  164 (226)
T ss_pred             HHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence            10    12244423 567899999998887777654

>PLN02318 phosphoribulokinase/uridine kinase

Probab=88.76  E-value=1.5  Score=49.97  Aligned_cols=20  Identities=15%  Similarity=0.172  Sum_probs=17.8

Q ss_pred             EecCcCChHHHHHHHhc-CCC
Q psy6613         151 ITRVTADISLAKRSLMS-NPS  170 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~  170 (510)
                      .||+|+||||+.+.|.. .|.
T Consensus        71 aGpSGSGKTTLAk~LaglLp~   91 (656)
T PLN02318         71 AGPSGAGKTVFTEKVLNFMPS   91 (656)
T ss_pred             ECCCCCcHHHHHHHHHhhCCC
Confidence            89999999999999988 553

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=88.72  E-value=0.32  Score=40.77  Aligned_cols=17  Identities=12%  Similarity=0.096  Sum_probs=16.3

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+||||+.+.|..
T Consensus         8 ~G~~G~GKTtl~~~l~~   24 (148)
T smart00382        8 VGPPGSGKTTLARALAR   24 (148)
T ss_pred             ECCCCCcHHHHHHHHHh
Confidence            99999999999999987

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=88.72  E-value=0.29  Score=45.82  Aligned_cols=21  Identities=14%  Similarity=0.099  Sum_probs=18.7

Q ss_pred             CCeE-EecCcCChHHHHHHHhc
Q psy6613         147 GMII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +|++ +||+|+|||||++.|..
T Consensus         2 krimliG~~g~GKTTL~q~L~~   23 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNG   23 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcC
Confidence            4666 99999999999999987

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK07429 phosphoribulokinase; Provisional

Probab=88.63  E-value=1.8  Score=45.46  Aligned_cols=17  Identities=12%  Similarity=-0.019  Sum_probs=16.0

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      .|++|+||||+.+.|..
T Consensus        14 ~G~SGSGKSTla~~L~~   30 (327)
T PRK07429         14 AGDSGCGKTTFLRGLAD   30 (327)
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            89999999999999887

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=88.48  E-value=12  Score=35.84  Aligned_cols=136  Identities=15%  Similarity=0.122  Sum_probs=72.4

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchhhhhhhc--------------ccHHHHHHHHHcCCeEEEEeccCC-c
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSSVLTEVQ--------------TEIERVYELASTLQLVVLDCDTIN-H  214 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~pFe~~I~--------------TslesI~~vi~sGKi~ILDID~qg-~  214 (510)
                      .|.+|+||||+-..|.. .--.|.-.-.--++..-+.+-.              +--+.+......|+++|+-|..-- .
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CSALKr~   80 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACSALKRS   80 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecHHHHHH
Confidence            38999999999999887 3323433322112221111100              233555666678998888886411 0


Q ss_pred             hhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH--HHHHHHHhcCCCCccEEEe--CCCHHHHHHHHHH
Q psy6613         215 PSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM--VAAEKLAQCPQEMFDVILD--ENQLEDACEHIAE  289 (510)
Q Consensus       215 ~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL--~aa~eLEq~~~~~FD~VIv--NDdLd~A~~eL~~  289 (510)
                      --.++|. ...-.+||+.. +++.+.+|++.|..--..   ..|  .+=.-||.--+.. |.+.+  +..+++..++...
T Consensus        81 YRD~LR~~~~~~~Fv~L~g-~~~~i~~Rm~~R~gHFM~---~~ll~SQfa~LE~P~~de-~vi~idi~~~~e~vv~~~~~  155 (161)
T COG3265          81 YRDLLREANPGLRFVYLDG-DFDLILERMKARKGHFMP---ASLLDSQFATLEEPGADE-DVLTIDIDQPPEEVVAQALA  155 (161)
T ss_pred             HHHHHhccCCCeEEEEecC-CHHHHHHHHHhcccCCCC---HHHHHHHHHHhcCCCCCC-CEEEeeCCCCHHHHHHHHHH
Confidence            1122333 23456677665 789999999888532211   122  1112344433334 55554  3447777766664


Q ss_pred             HH
Q psy6613         290 YL  291 (510)
Q Consensus       290 il  291 (510)
                      .|
T Consensus       156 ~l  157 (161)
T COG3265         156 WL  157 (161)
T ss_pred             HH
Confidence            33

>cd01855 YqeH YqeH

Probab=88.12  E-value=0.38  Score=45.33  Aligned_cols=40  Identities=8%  Similarity=0.007  Sum_probs=29.0

Q ss_pred             CCCCCeE-EecCcCChHHHHHHHhc-CCC-------CceeeecCCCchh
Q psy6613         144 PSPGMII-ITRVTADISLAKRSLMS-NPS-------KRAIMERSNSRSS  183 (510)
Q Consensus       144 Ps~~RpI-~GPsGvGKsTL~~rLL~-~P~-------~F~~sVshTTR~p  183 (510)
                      |..+++. +|.+||||||+.+.|+. .-.       --....|+|||.+
T Consensus       125 ~~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~  173 (190)
T cd01855         125 KKGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDL  173 (190)
T ss_pred             hcCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeee
Confidence            5555665 99999999999999997 211       1233467899987

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG2996|consensus

Probab=88.11  E-value=0.26  Score=55.19  Aligned_cols=38  Identities=26%  Similarity=0.495  Sum_probs=32.1

Q ss_pred             cccccCCceEEEEeecC-CCceEEEEccCCCceeeecChh
Q psy6613          70 AVSFDIHEFLHIKEKYD-SNWWIGRLVKEGSECGFIPSPV  108 (510)
Q Consensus        70 ~LsF~~GDiL~V~~~~d-~~WWqar~v~~~~~~GlIPS~~  108 (510)
                      -|.|..|||++.+.-++ ..||+||..++ +.+|++||..
T Consensus       626 ~l~~~~gdvlel~~~d~~s~~w~gr~~~s-r~sg~fpss~  664 (865)
T KOG2996|consen  626 RLVLQEGDVLELLKGDAESSWWEGRNHGS-RESGNFPSST  664 (865)
T ss_pred             ceEecCCceeehhcCCCCCcccccCCccC-CccCCCCccc
Confidence            58999999999998754 58999999865 5899999864

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=87.98  E-value=0.39  Score=42.13  Aligned_cols=32  Identities=9%  Similarity=-0.002  Sum_probs=22.2

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCch
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRS  182 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~  182 (510)
                      +|++|+||||+.++|......+....+.||+.
T Consensus         7 ~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~   38 (157)
T cd04164           7 VGKPNVGKSSLLNALAGRDRAIVSDIAGTTRD   38 (157)
T ss_pred             ECCCCCCHHHHHHHHHCCceEeccCCCCCccc
Confidence            99999999999999987332233334455544

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=87.71  E-value=1.6  Score=44.04  Aligned_cols=19  Identities=0%  Similarity=-0.046  Sum_probs=16.8

Q ss_pred             eEEecCcCChHHHHHHHhc
Q psy6613         149 IIITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~  167 (510)
                      ++.||+|+|||+|.+.+..
T Consensus        34 ll~Gp~G~GKT~la~~ia~   52 (305)
T TIGR00635        34 LLYGPPGLGKTTLAHIIAN   52 (305)
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3499999999999998887

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=87.65  E-value=4.4  Score=42.66  Aligned_cols=139  Identities=14%  Similarity=0.118  Sum_probs=73.1

Q ss_pred             CCCCCe--E--EecCcCChHHHHHHHhc-C-CCCceee---ecCCCchh----------hhhh-----hc----------
Q psy6613         144 PSPGMI--I--ITRVTADISLAKRSLMS-N-PSKRAIM---ERSNSRSS----------VLTE-----VQ----------  189 (510)
Q Consensus       144 Ps~~Rp--I--~GPsGvGKsTL~~rLL~-~-P~~F~~s---VshTTR~p----------Fe~~-----I~----------  189 (510)
                      |..|+.  |  -|++|+|||||...|.. . -.....+   |--++...          |.+.     ++          
T Consensus        46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~l  125 (323)
T COG1703          46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTL  125 (323)
T ss_pred             hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccc
Confidence            655554  3  69999999999999886 2 2233222   22222111          3221     11          


Q ss_pred             -----ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc---CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy6613         190 -----TEIERVYELASTLQLVVLDCDTINHPSQLAKT---NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAE  261 (510)
Q Consensus       190 -----TslesI~~vi~sGKi~ILDID~qg~~lq~lks---~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~  261 (510)
                           ...+.|.-+=..|..+|+-=.+ |  +-+-..   ..--.++++..|..          | ++-.-+++-|    
T Consensus       126 GGlS~at~~~i~~ldAaG~DvIIVETV-G--vGQsev~I~~~aDt~~~v~~pg~----------G-D~~Q~iK~Gi----  187 (323)
T COG1703         126 GGLSRATREAIKLLDAAGYDVIIVETV-G--VGQSEVDIANMADTFLVVMIPGA----------G-DDLQGIKAGI----  187 (323)
T ss_pred             hhhhHHHHHHHHHHHhcCCCEEEEEec-C--CCcchhHHhhhcceEEEEecCCC----------C-cHHHHHHhhh----
Confidence                 3445565555678887764333 3  222222   34456788888742          2 1111111111    


Q ss_pred             HHHhcCCCCccEEEeC-C---CHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy6613         262 KLAQCPQEMFDVILDE-N---QLEDACEHIAEYLEAYWRATHPPAAPPQ  306 (510)
Q Consensus       262 eLEq~~~~~FD~VIvN-D---dLd~A~~eL~~ileai~~a~h~p~~~p~  306 (510)
                       ||     .=|.+++| .   +-+.|+.+|...+..+..-.+.+-|.|+
T Consensus       188 -mE-----iaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~pp  230 (323)
T COG1703         188 -ME-----IADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPP  230 (323)
T ss_pred             -hh-----hhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCc
Confidence             22     23777777 3   3555667777444433334677778877

>cd00876 Ras Ras family

Probab=87.55  E-value=0.48  Score=41.77  Aligned_cols=18  Identities=6%  Similarity=-0.003  Sum_probs=16.7

Q ss_pred             EEecCcCChHHHHHHHhc
Q psy6613         150 IITRVTADISLAKRSLMS  167 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~  167 (510)
                      |+|++|+|||+|.++|+.
T Consensus         4 i~G~~~~GKTsli~~l~~   21 (160)
T cd00876           4 VLGAGGVGKSAITIQFVK   21 (160)
T ss_pred             EECCCCCCHHHHHHHHHh
Confidence            399999999999999986

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd01895 EngA2 EngA2 subfamily

Probab=87.45  E-value=0.5  Score=41.96  Aligned_cols=36  Identities=19%  Similarity=0.091  Sum_probs=24.9

Q ss_pred             CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh
Q psy6613         148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS  183 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p  183 (510)
                      +++ +|++|+||||+.++|+..........+.||+..
T Consensus         4 ~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~   40 (174)
T cd01895           4 RIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDS   40 (174)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCc
Confidence            344 999999999999999873322233345666654

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=87.44  E-value=0.63  Score=46.92  Aligned_cols=65  Identities=6%  Similarity=0.023  Sum_probs=37.1

Q ss_pred             CeEEecCcCChHHHHHHHhc-CCCCce-eeecCCCchh---------------hhhhhc----ccHHHHHHHHHcCCeE-
Q psy6613         148 MIIITRVTADISLAKRSLMS-NPSKRA-IMERSNSRSS---------------VLTEVQ----TEIERVYELASTLQLV-  205 (510)
Q Consensus       148 RpI~GPsGvGKsTL~~rLL~-~P~~F~-~sVshTTR~p---------------Fe~~I~----TslesI~~vi~sGKi~-  205 (510)
                      -++.||+|+|||||..-+-+ .-..|. ++-+...++.               |-.+||    .--+.+.-.++.|++- 
T Consensus        53 ~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idi  132 (233)
T PF05496_consen   53 MLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDI  132 (233)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEE
T ss_pred             EEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEE
Confidence            34599999999999986666 333343 2223333433               334455    3345566788889884 


Q ss_pred             EEEeccC
Q psy6613         206 VLDCDTI  212 (510)
Q Consensus       206 ILDID~q  212 (510)
                      ++...+.
T Consensus       133 iiG~g~~  139 (233)
T PF05496_consen  133 IIGKGPN  139 (233)
T ss_dssp             EBSSSSS
T ss_pred             Eeccccc
Confidence            4444443

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=87.42  E-value=2.2  Score=43.62  Aligned_cols=134  Identities=12%  Similarity=0.044  Sum_probs=63.5

Q ss_pred             EecCcCChHHHHHHHhc-CCC-Ccee-eecC----CCchhh-----hhhhc-ccHHHHHHHHHcCCeEEEEeccCCchhH
Q psy6613         151 ITRVTADISLAKRSLMS-NPS-KRAI-MERS----NSRSSV-----LTEVQ-TEIERVYELASTLQLVVLDCDTINHPSQ  217 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~-~F~~-sVsh----TTR~pF-----e~~I~-TslesI~~vi~sGKi~ILDID~qg~~lq  217 (510)
                      +|-+|+||||+.+.|.. ..+ .... .|+.    ..|..+     |..+. .-+..|.+.+.++.+||+|-.--   .+
T Consensus         7 ~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nY---iK   83 (270)
T PF08433_consen    7 CGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNY---IK   83 (270)
T ss_dssp             E--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S------SH
T ss_pred             EcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCch---HH
Confidence            99999999999999887 322 1221 1220    112211     12222 45677888888999998886431   23


Q ss_pred             hhhc---------CCCceEEEEeCCCHHHHHHHHHhcCCC--cHHHHHHHHHHHHHH-Hhc-CCCCccEEEeCCCHHHHH
Q psy6613         218 LAKT---------NLSPCIVYLKISSPKVLQRLIKSRGKS--QTRHLNVQMVAAEKL-AQC-PQEMFDVILDENQLEDAC  284 (510)
Q Consensus       218 ~lks---------~l~PivIFIkPPS~e~L~~rLr~Rgt~--~~e~i~kRL~aa~eL-Eq~-~~~~FD~VIvNDdLd~A~  284 (510)
                      -.|.         ...=.+||+..| .+.-..+-..|+..  -.++...+|...-|. ... -++..-++|.+++-+..+
T Consensus        84 g~RYelyclAr~~~~~~c~i~~~~~-~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P~~~nrWD~plf~i~~~~~~~~~  162 (270)
T PF08433_consen   84 GMRYELYCLARAYGTTFCVIYCDCP-LETCLQRNSKRPEPERYPEETIDDMIQRFEEPDPKNRWDSPLFTIDSSDEELPL  162 (270)
T ss_dssp             HHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHTT-S--S-HHHHHHHHHH---TTSS-GGGS-SEEEE-TTS---H
T ss_pred             HHHHHHHHHHHHcCCCEEEEEECCC-HHHHHHhhhccCCCCCCCHHHHHHHHHHhcCCCCCCCccCCeEEEecCCCCCCH
Confidence            2232         222356888887 67777777777755  456666666322221 111 123345666655555555


Q ss_pred             HHHH
Q psy6613         285 EHIA  288 (510)
Q Consensus       285 ~eL~  288 (510)
                      +++.
T Consensus       163 ~~I~  166 (270)
T PF08433_consen  163 EEIW  166 (270)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5555

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=87.42  E-value=9.1  Score=37.00  Aligned_cols=20  Identities=10%  Similarity=0.047  Sum_probs=18.2

Q ss_pred             EecCcCChHHHHHHHhc-CCC
Q psy6613         151 ITRVTADISLAKRSLMS-NPS  170 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~  170 (510)
                      ++..|+||||+...|.+ +|+
T Consensus         5 IAtiGCGKTTva~aL~~LFg~   25 (168)
T PF08303_consen    5 IATIGCGKTTVALALSNLFGE   25 (168)
T ss_pred             ecCCCcCHHHHHHHHHHHcCC
Confidence            89999999999999998 774

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=87.26  E-value=7.6  Score=36.81  Aligned_cols=97  Identities=8%  Similarity=-0.007  Sum_probs=55.2

Q ss_pred             EecCcCChHHHHHHHhc-CCCCcee-eecCC--Cchh--------hhhh-h-----cccHHHHHHHHHcCCeEEEEeccC
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAI-MERSN--SRSS--------VLTE-V-----QTEIERVYELASTLQLVVLDCDTI  212 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~-sVshT--TR~p--------Fe~~-I-----~TslesI~~vi~sGKi~ILDID~q  212 (510)
                      +||+|+||||+.+.|+. .|..... .+-..  ...+        +... .     .+-.+.++..++.+-..|+--+..
T Consensus        31 ~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~igEir  110 (186)
T cd01130          31 SGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRIIVGEVR  110 (186)
T ss_pred             ECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEEEEccC
Confidence            99999999999999887 4332222 22110  0000        0000 0     134456666777777777766655


Q ss_pred             Cch-hHhhhc--CCCc-eEEEEeCCCHHHHHHHHHhcCC
Q psy6613         213 NHP-SQLAKT--NLSP-CIVYLKISSPKVLQRLIKSRGK  247 (510)
Q Consensus       213 g~~-lq~lks--~l~P-ivIFIkPPS~e~L~~rLr~Rgt  247 (510)
                      +.. ...++.  .-++ .+-.|...|....-.|+.....
T Consensus       111 ~~ea~~~~~a~~tGh~g~~~T~Ha~s~~~~~~Rl~~~~~  149 (186)
T cd01130         111 GGEALDLLQAMNTGHPGGMTTIHANSAEEALTRLELLPS  149 (186)
T ss_pred             cHHHHHHHHHHhcCCCCceeeecCCCHHHHHHHHHHHHh
Confidence            411 222333  2355 6777888888777777766543

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=87.21  E-value=0.47  Score=42.17  Aligned_cols=20  Identities=10%  Similarity=0.052  Sum_probs=17.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||+|.++|+.
T Consensus         2 ki~~vG~~~vGKTsli~~l~~   22 (168)
T cd04119           2 KVISMGNSGVGKSCIIKRYCE   22 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            344 99999999999999997

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01870 RhoA_like RhoA-like subfamily

Probab=87.17  E-value=0.51  Score=42.91  Aligned_cols=21  Identities=0%  Similarity=-0.078  Sum_probs=18.5

Q ss_pred             CCeE-EecCcCChHHHHHHHhc
Q psy6613         147 GMII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      .+++ +|++|||||+|..+++.
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~   23 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSK   23 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3555 99999999999999997

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PRK12608 transcription termination factor Rho; Provisional

Probab=86.79  E-value=0.99  Score=48.56  Aligned_cols=157  Identities=15%  Similarity=0.132  Sum_probs=79.5

Q ss_pred             EEEEe-eccCCCCCC-CCC-CCCccccccCCceEEEEee-cCCCceEEEEccCCCceeeecChhHHHHHHHHhhhccCCC
Q psy6613          49 AVRTN-VKYDGSIDD-DSP-VHGYAVSFDIHEFLHIKEK-YDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQARNPK  124 (510)
Q Consensus        49 ~VRAl-fdY~~~~D~-~iP-c~e~~LsF~~GDiL~V~~~-~d~~WWqar~v~~~~~~GlIPS~~~~Errr~~~~~kk~~~  124 (510)
                      |+|.. ++|.+..|+ .+| .+=.-..++.||.+.-... ...+-|.+|.++-.|   --|-...  .+.....   ...
T Consensus        32 flr~~~~~~~~~~~d~yv~~~~i~~~~l~~Gd~V~~~~r~~~~~~~LgrV~~~~G---~p~d~~~--~~~~~~~---~~p  103 (380)
T PRK12608         32 FLRSARRNYLPSPDDVFVPPALIRRFNLRTGDVVEGVARPRERYRVLVRVDSVNG---TDPEKLA--RRPHFDD---LTP  103 (380)
T ss_pred             EeecCccCCCCCCCCeeeCHHHHHHhCCCCCCEEEeccCCCCChhheEEEeccCC---cCchhcc--cccCcCc---CCC
Confidence            58886 889888765 222 1222456889998888665 445679999875433   1221110  0000000   000


Q ss_pred             cccccC--CC--CCCCCCCCCC--CC-CCC-Ce-EEecCcCChHHHHHHHhc-----CCCC--ceeeecCCCchh--hhh
Q psy6613         125 LYSSKT--SS--TSNLGALSSD--AP-SPG-MI-IITRVTADISLAKRSLMS-----NPSK--RAIMERSNSRSS--VLT  186 (510)
Q Consensus       125 l~~sk~--~s--~~~~~~~~~d--~P-s~~-Rp-I~GPsGvGKsTL~~rLL~-----~P~~--F~~sVshTTR~p--Fe~  186 (510)
                      .+-...  ..  ..+.+.-.-|  .| ++| |. |+||+|+|||||++.|++     +|+.  +...|....+..  |.+
T Consensus       104 i~p~~R~~ie~~~~~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~  183 (380)
T PRK12608        104 LHPRERLRLETGSDDLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRR  183 (380)
T ss_pred             CCccccccccccCcchhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHH
Confidence            000000  00  0000000001  14 222 54 499999999999998765     3343  233355445544  332


Q ss_pred             hhc--------------------ccHHHHHHHHHcCCeEEEEeccCC
Q psy6613         187 EVQ--------------------TEIERVYELASTLQLVVLDCDTIN  213 (510)
Q Consensus       187 ~I~--------------------TslesI~~vi~sGKi~ILDID~qg  213 (510)
                      .+.                    +-.+..+...++|++|||=+|--.
T Consensus       184 ~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt  230 (380)
T PRK12608        184 SVKGEVYASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT  230 (380)
T ss_pred             HHhhhEEeecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence            221                    223444556678999999998754

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=86.69  E-value=0.39  Score=43.30  Aligned_cols=31  Identities=10%  Similarity=0.025  Sum_probs=22.3

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS  183 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p  183 (510)
                      +|++|||||||.++|.. ..  +....+.||+.+
T Consensus         2 iG~~~~GKStll~~l~~~~~--~~~~~~~~t~~~   33 (176)
T cd01881           2 VGLPNVGKSTLLNALTNAKP--KVANYPFTTLEP   33 (176)
T ss_pred             CCCCCCcHHHHHHHHhcCCc--cccCCCceeecC
Confidence            69999999999999987 32  222235566655

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK00089 era GTPase Era; Reviewed

Probab=86.54  E-value=0.45  Score=48.03  Aligned_cols=33  Identities=12%  Similarity=0.075  Sum_probs=24.2

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchh
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS  183 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p  183 (510)
                      +|++|||||||.+.|+...-......++|||..
T Consensus        11 iG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~   43 (292)
T PRK00089         11 VGRPNVGKSTLLNALVGQKISIVSPKPQTTRHR   43 (292)
T ss_pred             ECCCCCCHHHHHHHHhCCceeecCCCCCccccc
Confidence            999999999999999973212233456777764

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=86.47  E-value=0.5  Score=48.04  Aligned_cols=21  Identities=14%  Similarity=0.139  Sum_probs=17.0

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |-.|  +||||||||||.+-+--
T Consensus        29 GEfvsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          29 GEFVAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            4444  99999999999986655

>KOG1191|consensus

Probab=86.31  E-value=1  Score=49.95  Aligned_cols=61  Identities=16%  Similarity=0.161  Sum_probs=44.6

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchhhhhhhc------------------------ccHHHHHHHHHcCCeEE
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQ------------------------TEIERVYELASTLQLVV  206 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~pFe~~I~------------------------TslesI~~vi~sGKi~I  206 (510)
                      +||+.||||+|.+.|.+.+-....++|-|||..-+..|.                        -.++.-++.+..-.+|+
T Consensus       274 vGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~  353 (531)
T KOG1191|consen  274 VGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVIL  353 (531)
T ss_pred             EcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEE
Confidence            999999999999999886556777899999987333221                        23444455666777777


Q ss_pred             EEecc
Q psy6613         207 LDCDT  211 (510)
Q Consensus       207 LDID~  211 (510)
                      |-+|+
T Consensus       354 ~vvda  358 (531)
T KOG1191|consen  354 LVVDA  358 (531)
T ss_pred             EEecc
Confidence            77776

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=86.17  E-value=0.7  Score=42.26  Aligned_cols=36  Identities=14%  Similarity=-0.078  Sum_probs=26.6

Q ss_pred             CCeE-EecCcCChHHHHHHHhc-CCCCceeeecCCCchh
Q psy6613         147 GMII-ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS  183 (510)
Q Consensus       147 ~RpI-~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p  183 (510)
                      .++. +|.+|+||||+.+.|+. .... .-..+||||..
T Consensus       101 ~~~~~~G~~~~GKstlin~l~~~~~~~-~~~~~~~t~~~  138 (155)
T cd01849         101 ITVGVIGYPNVGKSSVINALLNKLKLK-VGNVPGTTTSQ  138 (155)
T ss_pred             cEEEEEccCCCCHHHHHHHHHcccccc-ccCCCCcccce
Confidence            4554 99999999999999997 3211 22357899876

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=86.05  E-value=16  Score=40.90  Aligned_cols=17  Identities=18%  Similarity=0.036  Sum_probs=15.8

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      .||+|+||||+.+.|.+
T Consensus       290 ~G~sgsGKst~a~~la~  306 (512)
T PRK13477        290 DGPAGAGKSTVTRAVAK  306 (512)
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            79999999999998875

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=85.78  E-value=0.53  Score=41.60  Aligned_cols=20  Identities=10%  Similarity=0.069  Sum_probs=17.9

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus         3 ki~iiG~~~vGKTsl~~~~~~   23 (162)
T cd04138           3 KLVVVGAGGVGKSALTIQLIQ   23 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            455 99999999999999997

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=85.58  E-value=2  Score=46.65  Aligned_cols=19  Identities=11%  Similarity=0.045  Sum_probs=15.3

Q ss_pred             eEEecCcCChHHHHHHHhc
Q psy6613         149 IIITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~  167 (510)
                      |+-||+|+|||||.+-|-.
T Consensus        52 Il~GPPG~GKTTlA~liA~   70 (436)
T COG2256          52 ILWGPPGTGKTTLARLIAG   70 (436)
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            4489999999999875554

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=85.54  E-value=0.62  Score=44.13  Aligned_cols=20  Identities=10%  Similarity=0.066  Sum_probs=18.1

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|+.|||||||+.+|..
T Consensus         7 kivv~G~~g~GKTtl~~~l~~   27 (219)
T COG1100           7 KIVVLGDGGVGKTTLLNRLVG   27 (219)
T ss_pred             EEEEEcCCCccHHHHHHHHhc
Confidence            455 99999999999999998

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=85.54  E-value=0.66  Score=37.59  Aligned_cols=19  Identities=11%  Similarity=0.032  Sum_probs=16.1

Q ss_pred             eEEecCcCChHHHHHHHhc
Q psy6613         149 IIITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~  167 (510)
                      +|+||+|+|||||.+.+.-
T Consensus        27 li~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   27 LITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3499999999999997654

>cd04127 Rab27A Rab27a subfamily

Probab=85.09  E-value=0.68  Score=42.35  Aligned_cols=20  Identities=0%  Similarity=-0.112  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||+|.+++..
T Consensus         6 ki~ivG~~~vGKTsli~~~~~   26 (180)
T cd04127           6 KFLALGDSGVGKTSFLYQYTD   26 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            444 99999999999999987

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

Probab=84.96  E-value=8.9  Score=37.32  Aligned_cols=145  Identities=10%  Similarity=0.028  Sum_probs=72.7

Q ss_pred             CCCCCeE--EecCcCChHHHHHHHhc-CCCCceeeecC-CCchh-hh------hhhc--------ccHHHHH-HHHHcCC
Q psy6613         144 PSPGMII--ITRVTADISLAKRSLMS-NPSKRAIMERS-NSRSS-VL------TEVQ--------TEIERVY-ELASTLQ  203 (510)
Q Consensus       144 Ps~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVsh-TTR~p-Fe------~~I~--------TslesI~-~vi~sGK  203 (510)
                      |++-++|  +||-.+|||||.++|-+ +..    .... --|.- |+      ++..        --...+. .+-...+
T Consensus         5 p~F~K~VailG~ESsGKStLv~kLA~~fnt----~~~wEY~Re~v~~~l~gdeal~y~Dy~~ia~Gq~~~~d~av~~a~~   80 (187)
T COG3172           5 PFFVKTVAILGGESSGKSTLVNKLANIFNT----TSAWEYGREYVFEHLGGDEALQYSDYAKIALGQAAYEDAAVRYANK   80 (187)
T ss_pred             hhhheeeeeecCcccChHHHHHHHHHHhCC----CchhHHHHHHHHHHhCCchhhhhccHHHHHhhhHHHHHHHHhCCCc
Confidence            6666766  89999999999999987 321    0000 00111 11      1111        1222222 2345689


Q ss_pred             eEEEEeccCCchhHhhhc-C-CCc----------e-EEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCC
Q psy6613         204 LVVLDCDTINHPSQLAKT-N-LSP----------C-IVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQE  269 (510)
Q Consensus       204 i~ILDID~qg~~lq~lks-~-l~P----------i-vIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~  269 (510)
                      ++++|.|+..+.+=.... . .+|          + ++.+.+|+.+=.-.=++..|.   ....+.. +..+++-..  +
T Consensus        81 v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~~r~DL~lLl~p~t~wvaDG~R~~~~---~~~R~~F~~~l~~~L~~--~  155 (187)
T COG3172          81 VAFIDTDFLTTQAFCKKYEGREHPFLQALIAEYRFDLTLLLEPNTPWVADGLRSLGS---SVQRQEFQNLLEQMLEE--N  155 (187)
T ss_pred             eEEEeccHHHHHHHHHHHcccCCchHHHHHhhcccceEEEcCCCCceeCCCcccccc---HhHHHHHHHHHHHHHHH--h
Confidence            999999986622222221 1 233          1 244445543222222222221   1222233 222222222  2


Q ss_pred             CccEEEeCC-CHHHHHHHHHHHHHHHHHh
Q psy6613         270 MFDVILDEN-QLEDACEHIAEYLEAYWRA  297 (510)
Q Consensus       270 ~FD~VIvND-dLd~A~~eL~~ileai~~a  297 (510)
                      .--+|++.+ +.++=+.+..+.++.+...
T Consensus       156 ~~~~v~i~~~~y~eR~~~~~~aV~ell~~  184 (187)
T COG3172         156 NIPFVVIEGEDYLERYLQAVEAVEELLGE  184 (187)
T ss_pred             CCcEEEEcCCCHHHHHHHHHHHHHHHHhc
Confidence            556777777 8888888888777777654

>cd04155 Arl3 Arl3 subfamily

Probab=84.95  E-value=0.72  Score=41.81  Aligned_cols=21  Identities=19%  Similarity=0.108  Sum_probs=18.2

Q ss_pred             CCeE-EecCcCChHHHHHHHhc
Q psy6613         147 GMII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      .+++ +||+|||||||.++|..
T Consensus        15 ~~v~i~G~~g~GKStLl~~l~~   36 (173)
T cd04155          15 PRILILGLDNAGKTTILKQLAS   36 (173)
T ss_pred             cEEEEEccCCCCHHHHHHHHhc
Confidence            3555 99999999999999987

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=84.83  E-value=0.77  Score=46.96  Aligned_cols=17  Identities=12%  Similarity=0.114  Sum_probs=16.4

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|||||||.+.|+.
T Consensus       167 ~G~sg~GKSTlin~l~~  183 (287)
T cd01854         167 VGQSGVGKSTLINALLP  183 (287)
T ss_pred             ECCCCCCHHHHHHHHhc
Confidence            99999999999999987

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=84.74  E-value=1.1  Score=44.39  Aligned_cols=37  Identities=16%  Similarity=0.218  Sum_probs=25.6

Q ss_pred             CCeE--EecCcCChHHHHHHHhc--CCCCceee---ecCCCchh
Q psy6613         147 GMII--ITRVTADISLAKRSLMS--NPSKRAIM---ERSNSRSS  183 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~--~P~~F~~s---VshTTR~p  183 (510)
                      +.++  +||||+|||||.+-+--  .|..=.+.   +.||..+|
T Consensus        25 ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P   68 (231)
T COG3840          25 GEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP   68 (231)
T ss_pred             CcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc
Confidence            4555  99999999999985443  45432222   57888888

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=84.63  E-value=0.94  Score=40.25  Aligned_cols=33  Identities=12%  Similarity=0.028  Sum_probs=22.5

Q ss_pred             EEecCcCChHHHHHHHhc-CCC-CceeeecCCCch
Q psy6613         150 IITRVTADISLAKRSLMS-NPS-KRAIMERSNSRS  182 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~-~P~-~F~~sVshTTR~  182 (510)
                      +.||+|+|||+|.+.|.. ... .+.+.++..|..
T Consensus         4 L~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~   38 (139)
T PF07728_consen    4 LVGPPGTGKTTLARELAALLGRPVIRINCSSDTTE   38 (139)
T ss_dssp             EEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTH
T ss_pred             EECCCCCCHHHHHHHHHHHhhcceEEEEecccccc
Confidence            489999999999999887 432 344455554443

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=84.58  E-value=0.67  Score=49.10  Aligned_cols=17  Identities=12%  Similarity=0.014  Sum_probs=15.4

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|||||||||+.+.+.-
T Consensus        35 lGPSGcGKSTlLr~IAG   51 (338)
T COG3839          35 LGPSGCGKSTLLRMIAG   51 (338)
T ss_pred             ECCCCCCHHHHHHHHhC
Confidence            99999999999987765

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=84.54  E-value=0.66  Score=41.59  Aligned_cols=20  Identities=5%  Similarity=0.022  Sum_probs=17.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus         2 ki~v~G~~~~GKTsli~~~~~   22 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQ   22 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            444 99999999999999987

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=84.48  E-value=0.73  Score=46.65  Aligned_cols=30  Identities=13%  Similarity=0.036  Sum_probs=23.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc-CCCCceeeec
Q psy6613         148 MII-ITRVTADISLAKRSLMS-NPSKRAIMER  177 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~-~P~~F~~sVs  177 (510)
                      |++ +|++|+|||+++..|+. .+..|...+-
T Consensus        15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l   46 (241)
T PF04665_consen   15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFL   46 (241)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhcccCCEEEE
Confidence            554 99999999999999998 6667754443

This is thought to be an ATPase involved in viral DNA packaging [].

>cd01898 Obg Obg subfamily

Probab=84.44  E-value=0.87  Score=40.96  Aligned_cols=32  Identities=9%  Similarity=-0.006  Sum_probs=22.4

Q ss_pred             EEecCcCChHHHHHHHhc-CCCCceeeecCCCchh
Q psy6613         150 IITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS  183 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p  183 (510)
                      |+|++|||||||.++|.. .+.  ....++||+.+
T Consensus         5 ivG~~~~GKStl~~~l~~~~~~--v~~~~~~t~~~   37 (170)
T cd01898           5 LVGLPNAGKSTLLSAISNAKPK--IADYPFTTLVP   37 (170)
T ss_pred             EECCCCCCHHHHHHHHhcCCcc--ccCCCccccCC
Confidence            399999999999999986 331  11234566655

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01894 EngA1 EngA1 subfamily

Probab=84.40  E-value=0.6  Score=41.02  Aligned_cols=34  Identities=15%  Similarity=0.032  Sum_probs=24.2

Q ss_pred             EEecCcCChHHHHHHHhcCCCCceeeecCCCchh
Q psy6613         150 IITRVTADISLAKRSLMSNPSKRAIMERSNSRSS  183 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p  183 (510)
                      ++|.+|||||||.++|......+....+.||+..
T Consensus         2 l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~   35 (157)
T cd01894           2 IVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDR   35 (157)
T ss_pred             ccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCc
Confidence            4799999999999999972223334456667654

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=84.36  E-value=2.8  Score=38.80  Aligned_cols=33  Identities=6%  Similarity=0.096  Sum_probs=21.8

Q ss_pred             EecCcCChHHHHHHHhc---CCCCceeeecCCCchh
Q psy6613         151 ITRVTADISLAKRSLMS---NPSKRAIMERSNSRSS  183 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~---~P~~F~~sVshTTR~p  183 (510)
                      +||.|+||||+...|..   ....-...+.+-++.+
T Consensus         6 ~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~   41 (173)
T cd03115           6 VGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP   41 (173)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence            89999999999888775   1222233455555543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.34  E-value=0.51  Score=45.59  Aligned_cols=157  Identities=15%  Similarity=0.103  Sum_probs=86.6

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecC---CCchh---hhhhhc---ccHHHHHHHHHcCCeEEEEeccCCc-hhHhh
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERS---NSRSS---VLTEVQ---TEIERVYELASTLQLVVLDCDTINH-PSQLA  219 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVsh---TTR~p---Fe~~I~---TslesI~~vi~sGKi~ILDID~qg~-~lq~l  219 (510)
                      -||.|+||||+..-++. .-+.+.+.=+.   .-+.|   -...++   .-+..+...++.|+...++.-..|. .++.+
T Consensus         8 aG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i~p~~p~~~~i~A~r~ai~~i~~~I~~~~~F~~ETtLS~~s~~~~i   87 (187)
T COG4185           8 AGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQISPDNPTSAAIQAARVAIDRIARLIDLGRPFIAETTLSGPSILELI   87 (187)
T ss_pred             ecCCCCCceeeeeccchhhcCCeEEECHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHcCCCcceEEeeccchHHHHH
Confidence            79999999998765443 22133333211   00111   011222   4566778889999999999887661 12334


Q ss_pred             hc----CCCceEEEEeCCCHHHHHHHHHhc----CCCc-HHHHHHHHHHHHHHHhcCCCCccEEEeCCCHHHHHHHHHHH
Q psy6613         220 KT----NLSPCIVYLKISSPKVLQRLIKSR----GKSQ-TRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEY  290 (510)
Q Consensus       220 ks----~l~PivIFIkPPS~e~L~~rLr~R----gt~~-~e~i~kRL~aa~eLEq~~~~~FD~VIvNDdLd~A~~eL~~i  290 (510)
                      ++    .|.-+..||--+|.+.-.+|.+.|    |-+- ++.+..|-..+-++-..+=++.|-..+-||-+.+-.-+.+|
T Consensus        88 k~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~rsle~l~~~l~l~dr~~IydNS~~~~~lv~e~  167 (187)
T COG4185          88 KTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRRSLELLAQALTLADRATIYDNSRLAPRLVAEF  167 (187)
T ss_pred             HHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhcceeEEecCCCCCceEEEEe
Confidence            43    567777888888876666665544    4333 45555566334333322336778777766655442222211


Q ss_pred             H-HHHHHhcCCCCCCCCC
Q psy6613         291 L-EAYWRATHPPAAPPQP  307 (510)
Q Consensus       291 l-eai~~a~h~p~~~p~~  307 (510)
                      = ..+|.-+.-|-|.|++
T Consensus       168 ~~~~i~~~~~~~~w~~~~  185 (187)
T COG4185         168 SGGGIIGRACWPSWTPPP  185 (187)
T ss_pred             CCceEEEEeecccccccC
Confidence            1 1334444555666554

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=84.31  E-value=0.74  Score=46.40  Aligned_cols=17  Identities=24%  Similarity=0.073  Sum_probs=14.7

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||||+||||+.+-|-.
T Consensus        34 iGpSGSGKSTlLRclN~   50 (240)
T COG1126          34 IGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             ECCCCCCHHHHHHHHHC
Confidence            99999999999986543

>cd04113 Rab4 Rab4 subfamily

Probab=84.24  E-value=0.7  Score=41.39  Aligned_cols=18  Identities=17%  Similarity=0.091  Sum_probs=16.8

Q ss_pred             EEecCcCChHHHHHHHhc
Q psy6613         150 IITRVTADISLAKRSLMS  167 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~  167 (510)
                      |+|++|||||||.++|+.
T Consensus         5 v~G~~~vGKTsli~~l~~   22 (161)
T cd04113           5 IIGSSGTGKSCLLHRFVE   22 (161)
T ss_pred             EECCCCCCHHHHHHHHHh
Confidence            399999999999999987

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=84.23  E-value=1.9  Score=40.98  Aligned_cols=17  Identities=12%  Similarity=-0.033  Sum_probs=16.3

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|+|||++...|..
T Consensus         7 ~G~~~sGKS~~a~~l~~   23 (170)
T PRK05800          7 TGGARSGKSRFAERLAA   23 (170)
T ss_pred             ECCCCccHHHHHHHHHH
Confidence            99999999999999987

>PRK06761 hypothetical protein; Provisional

Probab=83.98  E-value=4.2  Score=42.10  Aligned_cols=95  Identities=9%  Similarity=-0.090  Sum_probs=49.8

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCc-----hh------------hhhhhc----ccHHHHHHHHHcCCeEEEEe
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSR-----SS------------VLTEVQ----TEIERVYELASTLQLVVLDC  209 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR-----~p------------Fe~~I~----TslesI~~vi~sGKi~ILDI  209 (510)
                      .||+|+||||+.+.|.+.-...++.+.+++.     +.            |...+.    -...-+++.+..|..+|+-.
T Consensus         9 ~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~g~~~i~~~   88 (282)
T PRK06761          9 EGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVACFTKEEFDRLLSNYPDFKEVLLKNVLKKGDYYLLPY   88 (282)
T ss_pred             ECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccCCCHHHHHHHHHhhhHHHHHHHHHHHHcCCeEEEEe
Confidence            8999999999999998822222223322211     11            111111    12334455667787766665


Q ss_pred             ccCCch-hHhhhc-CCCc-eEEEEeCCCHHHHHHHHHhc
Q psy6613         210 DTINHP-SQLAKT-NLSP-CIVYLKISSPKVLQRLIKSR  245 (510)
Q Consensus       210 D~qg~~-lq~lks-~l~P-ivIFIkPPS~e~L~~rLr~R  245 (510)
                      ..--.+ -..++. .+.+ .+-|+-..+.+.+++|+..|
T Consensus        89 ~~l~~~yr~~~~~~~~~~~~v~~~h~~p~e~i~~R~~~r  127 (282)
T PRK06761         89 RKIKNEFGDQFSDELFNDISKNDIYELPFDKNTELITDR  127 (282)
T ss_pred             hhhhHHHhhhhhhhhcccceeeeeecCCHHHHHHHHHHH
Confidence            331100 011222 1222 35555577888888887654

>smart00175 RAB Rab subfamily of small GTPases

Probab=83.84  E-value=0.76  Score=40.89  Aligned_cols=20  Identities=20%  Similarity=0.061  Sum_probs=17.6

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|++|+|||||.++|+.
T Consensus         2 kv~v~G~~~~GKTtli~~l~~   22 (164)
T smart00175        2 KIILIGDSGVGKSSLLSRFTD   22 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            344 99999999999999987

Rab GTPases are implicated in vesicle trafficking.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=83.84  E-value=0.79  Score=43.65  Aligned_cols=55  Identities=18%  Similarity=0.222  Sum_probs=27.9

Q ss_pred             CceEEEEeCCCHHHHHHHHHh----cCCCcHHHHHHHHHHHHHHHh----cCCCCccEEEeCCC
Q psy6613         224 SPCIVYLKISSPKVLQRLIKS----RGKSQTRHLNVQMVAAEKLAQ----CPQEMFDVILDENQ  279 (510)
Q Consensus       224 ~PivIFIkPPS~e~L~~rLr~----Rgt~~~e~i~kRL~aa~eLEq----~~~~~FD~VIvNDd  279 (510)
                      .-+.|||.++.--.|.+|+..    ||.+. ++...++......+.    -+...-|+||.+-.
T Consensus       127 ~D~~ifld~~~~~~l~Rri~RD~~~rG~~~-~~~~~~~~~~~~~~~~~I~p~~~~ADivi~~~~  189 (194)
T PF00485_consen  127 FDLKIFLDADEDLRLERRIQRDVAERGRSP-EEVIAQYERVRPGYERYIEPQKERADIVIPSGP  189 (194)
T ss_dssp             -SEEEEEEE-HHHHHHHHHHHHHHHS-S-H-HHHHHHHHTHHHHHHHCTGGGGGG-SEEEESCT
T ss_pred             ceeEEEecccHHHHHHHHhhhhccccCCcc-eeEEEEeecCChhhhhheeccccccEEEECCCC
Confidence            347899998876667777643    66654 344444421111111    12357799987643

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd04159 Arl10_like Arl10-like subfamily

Probab=83.83  E-value=0.8  Score=39.88  Aligned_cols=18  Identities=0%  Similarity=-0.001  Sum_probs=16.6

Q ss_pred             EEecCcCChHHHHHHHhc
Q psy6613         150 IITRVTADISLAKRSLMS  167 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~  167 (510)
                      |+|++|||||+|.++|..
T Consensus         4 i~G~~~~GKssl~~~l~~   21 (159)
T cd04159           4 LVGLQNSGKTTLVNVIAG   21 (159)
T ss_pred             EEcCCCCCHHHHHHHHcc
Confidence            489999999999999987

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=83.70  E-value=4.4  Score=40.32  Aligned_cols=21  Identities=10%  Similarity=0.161  Sum_probs=15.4

Q ss_pred             HcC-CeEEEEeccCCchhHhhh
Q psy6613         200 STL-QLVVLDCDTINHPSQLAK  220 (510)
Q Consensus       200 ~sG-Ki~ILDID~qg~~lq~lk  220 (510)
                      +.| +++|+|+|+|++......
T Consensus        28 ~~G~~VlliD~DpQ~s~~~w~~   49 (231)
T PRK13849         28 SDGKRVALFEADENRPLTRWKE   49 (231)
T ss_pred             hCCCcEEEEeCCCCCCHHHHHH
Confidence            456 788999999996555443

>cd04140 ARHI_like ARHI subfamily

Probab=83.68  E-value=0.72  Score=41.86  Aligned_cols=20  Identities=5%  Similarity=-0.064  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||+|.++++.
T Consensus         3 kv~~vG~~~vGKTsli~~~~~   23 (165)
T cd04140           3 RVVVFGAGGVGKSSLVLRFVK   23 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            444 99999999999999987

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>KOG3523|consensus

Probab=83.67  E-value=0.43  Score=53.64  Aligned_cols=55  Identities=18%  Similarity=0.396  Sum_probs=44.9

Q ss_pred             EEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHHHH
Q psy6613          51 RTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENL  113 (510)
Q Consensus        51 RAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~Err  113 (510)
                      -|.-.|.+...+       +|++..|||+-|+.+..++|..|.+.+ +|..|+||+..-.|-.
T Consensus       612 ~~~~sy~a~q~D-------el~Le~~Dvv~v~~k~~DGWl~GeRl~-Dge~GWFP~~~veeI~  666 (695)
T KOG3523|consen  612 QCVHSYKAKQPD-------ELTLELADVVNVLQKTPDGWLEGERLR-DGERGWFPSSYVEEIT  666 (695)
T ss_pred             heeeccccCCCc-------eeeeehhhhhhhhhcCCCccccccccc-cCccCcchHHHHHHhc
Confidence            344447776654       699999999999999999999999876 4799999998887743

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=83.66  E-value=0.89  Score=48.43  Aligned_cols=21  Identities=14%  Similarity=0.211  Sum_probs=17.3

Q ss_pred             EEecCcCChHHHHHHHhc--CCC
Q psy6613         150 IITRVTADISLAKRSLMS--NPS  170 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~--~P~  170 (510)
                      ++|||||||||+.+.+--  .|+
T Consensus        36 lLGPSGcGKTTlLR~IAGfe~p~   58 (352)
T COG3842          36 LLGPSGCGKTTLLRMIAGFEQPS   58 (352)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCC
Confidence            399999999999987765  454

>PRK12678 transcription termination factor Rho; Provisional

Probab=83.57  E-value=2  Score=48.83  Aligned_cols=72  Identities=19%  Similarity=0.227  Sum_probs=46.3

Q ss_pred             eEEecCcCChHHHHHHHhc-----CCCCceeeecCCCchh----hhhhhc--------------------ccHHHHHHHH
Q psy6613         149 IIITRVTADISLAKRSLMS-----NPSKRAIMERSNSRSS----VLTEVQ--------------------TEIERVYELA  199 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~-----~P~~F~~sVshTTR~p----Fe~~I~--------------------TslesI~~vi  199 (510)
                      +|+||+|+|||||.+.|.+     +|+...+.+----|+.    |..-|.                    +-++.-+...
T Consensus       420 LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae~fr  499 (672)
T PRK12678        420 LIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLV  499 (672)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4599999999999998776     6765544444444544    332221                    3444455667


Q ss_pred             HcCCeEEEEeccCCchhHhhh
Q psy6613         200 STLQLVVLDCDTINHPSQLAK  220 (510)
Q Consensus       200 ~sGKi~ILDID~qg~~lq~lk  220 (510)
                      +.|++|||=+|-....++..+
T Consensus       500 e~G~dVlillDSlTR~ArAyr  520 (672)
T PRK12678        500 ELGKDVVVLLDSITRLGRAYN  520 (672)
T ss_pred             HcCCCEEEEEeCchHHHHHHH
Confidence            899999999997653333333

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=83.56  E-value=3.4  Score=45.90  Aligned_cols=19  Identities=16%  Similarity=0.078  Sum_probs=16.6

Q ss_pred             eEEecCcCChHHHHHHHhc
Q psy6613         149 IIITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~  167 (510)
                      ++.||.|+||||+.+.|.+
T Consensus        44 Lf~GP~GtGKTTlAriLAk   62 (484)
T PRK14956         44 IFFGPRGVGKTTIARILAK   62 (484)
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            4499999999999988876

>cd01862 Rab7 Rab7 subfamily

Probab=83.33  E-value=0.82  Score=41.12  Aligned_cols=20  Identities=5%  Similarity=0.051  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|+||||+.++|+.
T Consensus         2 ki~viG~~~~GKSsl~~~l~~   22 (172)
T cd01862           2 KVIILGDSGVGKTSLMNQYVN   22 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            344 99999999999999987

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=83.31  E-value=2.9  Score=49.27  Aligned_cols=19  Identities=11%  Similarity=0.029  Sum_probs=16.0

Q ss_pred             eEEecCcCChHHHHHHHhc
Q psy6613         149 IIITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~  167 (510)
                      +|.||.|+||+|+.+-|.+
T Consensus        41 Lf~Gp~G~GKTt~A~~lAr   59 (824)
T PRK07764         41 LFSGPRGCGKTSSARILAR   59 (824)
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            4599999999999887655

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=83.24  E-value=0.83  Score=40.23  Aligned_cols=20  Identities=20%  Similarity=0.225  Sum_probs=17.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||+|.++|..
T Consensus         2 kv~liG~~~vGKSsL~~~l~~   22 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQG   22 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcC
Confidence            455 99999999999999987

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=83.20  E-value=0.93  Score=43.32  Aligned_cols=16  Identities=6%  Similarity=-0.201  Sum_probs=14.7

Q ss_pred             EecCcCChHHHHHHHh
Q psy6613         151 ITRVTADISLAKRSLM  166 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL  166 (510)
                      +||+|+|||||.+.++
T Consensus        27 ~G~nG~GKSTLl~~il   42 (176)
T cd03238          27 TGVSGSGKSTLVNEGL   42 (176)
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            9999999999998765

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=83.18  E-value=0.88  Score=45.18  Aligned_cols=20  Identities=15%  Similarity=0.107  Sum_probs=17.4

Q ss_pred             EecCcCChHHHHHHHhc--CCC
Q psy6613         151 ITRVTADISLAKRSLMS--NPS  170 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~--~P~  170 (510)
                      +||||+||||+.+.|+.  .|.
T Consensus        34 ~GpSGAGKSTllkLi~~~e~pt   55 (223)
T COG2884          34 TGPSGAGKSTLLKLIYGEERPT   55 (223)
T ss_pred             ECCCCCCHHHHHHHHHhhhcCC
Confidence            99999999999998876  554

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=83.17  E-value=1.7  Score=37.82  Aligned_cols=41  Identities=17%  Similarity=0.179  Sum_probs=29.9

Q ss_pred             ccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          69 YAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        69 ~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ..|..++|.+|+|++..+.+=|..|+  +.|+.|+||...+.+
T Consensus        31 kDLpi~~GE~LeVI~~t~~~kvlCRN--~~GKYGYV~~~~L~~   71 (89)
T PF14603_consen   31 KDLPIKPGEILEVIQFTDDNKVLCRN--SEGKYGYVLRSHLLP   71 (89)
T ss_dssp             TB----TT-B-EEEEESSSSEEEEEE--TTTEEEEEEGGGS--
T ss_pred             ccCCcCCCCEEEEEEeCCCCeEEEeC--CCCceeEEEHHHccC
Confidence            46889999999999999999999998  468999999988855

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=83.13  E-value=1  Score=40.25  Aligned_cols=18  Identities=6%  Similarity=0.084  Sum_probs=16.8

Q ss_pred             EEecCcCChHHHHHHHhc
Q psy6613         150 IITRVTADISLAKRSLMS  167 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~  167 (510)
                      ++|+.|||||+|.++|..
T Consensus         4 vvG~~~vGKtsl~~~~~~   21 (162)
T PF00071_consen    4 VVGDSGVGKTSLINRLIN   21 (162)
T ss_dssp             EEESTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHh
Confidence            399999999999999997

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PRK04195 replication factor C large subunit; Provisional

Probab=83.08  E-value=21  Score=39.22  Aligned_cols=19  Identities=5%  Similarity=0.034  Sum_probs=17.0

Q ss_pred             eEEecCcCChHHHHHHHhc
Q psy6613         149 IIITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~  167 (510)
                      +|.||+|+||||+.+.|.+
T Consensus        43 LL~GppG~GKTtla~ala~   61 (482)
T PRK04195         43 LLYGPPGVGKTSLAHALAN   61 (482)
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3499999999999999887

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=82.93  E-value=1.1  Score=39.46  Aligned_cols=18  Identities=17%  Similarity=0.113  Sum_probs=16.3

Q ss_pred             EEecCcCChHHHHHHHhc
Q psy6613         150 IITRVTADISLAKRSLMS  167 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~  167 (510)
                      |+||+|+|||||.+.|..
T Consensus        16 i~G~nGsGKStLl~~l~g   33 (137)
T PF00005_consen   16 IVGPNGSGKSTLLKALAG   33 (137)
T ss_dssp             EEESTTSSHHHHHHHHTT
T ss_pred             EEccCCCccccceeeecc
Confidence            399999999999998877

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=82.93  E-value=0.99  Score=44.26  Aligned_cols=24  Identities=13%  Similarity=-0.049  Sum_probs=19.5

Q ss_pred             CCCCCeEEecCcCChHHHHHHHhc
Q psy6613         144 PSPGMIIITRVTADISLAKRSLMS  167 (510)
Q Consensus       144 Ps~~RpI~GPsGvGKsTL~~rLL~  167 (510)
                      |+....|.||||+||||+.+.+..
T Consensus        28 ~Ge~iaitGPSG~GKStllk~va~   51 (223)
T COG4619          28 AGEFIAITGPSGCGKSTLLKIVAS   51 (223)
T ss_pred             CCceEEEeCCCCccHHHHHHHHHh
Confidence            444455699999999999998876

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=82.87  E-value=1  Score=41.23  Aligned_cols=17  Identities=6%  Similarity=-0.011  Sum_probs=16.2

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|||||+|.++++.
T Consensus         8 vG~~~vGKTsli~~~~~   24 (170)
T cd04115           8 IGDSNVGKTCLTYRFCA   24 (170)
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            99999999999999986

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01860 Rab5_related Rab5-related subfamily

Probab=82.86  E-value=0.86  Score=40.70  Aligned_cols=20  Identities=5%  Similarity=0.052  Sum_probs=17.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|+|||++.++|+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~   23 (163)
T cd01860           3 KLVLLGDSSVGKSSLVLRFVK   23 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            344 99999999999999998

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd00154 Rab Rab family

Probab=82.84  E-value=0.9  Score=39.42  Aligned_cols=20  Identities=10%  Similarity=0.037  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|++|+||||+.++|..
T Consensus         2 ~i~~~G~~~~GKStl~~~l~~   22 (159)
T cd00154           2 KIVLIGDSGVGKTSLLLRFVD   22 (159)
T ss_pred             eEEEECCCCCCHHHHHHHHHh
Confidence            344 99999999999999987

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04136 Rap_like Rap-like subfamily

Probab=82.83  E-value=0.99  Score=40.21  Aligned_cols=20  Identities=5%  Similarity=0.034  Sum_probs=17.6

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|+.|||||+|..+++.
T Consensus         3 ki~i~G~~~vGKTsl~~~~~~   23 (163)
T cd04136           3 KVVVLGSGGVGKSALTVQFVQ   23 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            444 99999999999999987

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=82.70  E-value=0.92  Score=40.48  Aligned_cols=17  Identities=12%  Similarity=-0.023  Sum_probs=15.0

Q ss_pred             EEecCcCChHHHHHHHh
Q psy6613         150 IITRVTADISLAKRSLM  166 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL  166 (510)
                      |+||||+|||||.+.|+
T Consensus        20 I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          20 ITGDSGIGKTELALELI   36 (107)
T ss_pred             EEcCCCCCHHHHHHHhh
Confidence            39999999999998775

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=82.69  E-value=1.1  Score=40.09  Aligned_cols=19  Identities=5%  Similarity=-0.067  Sum_probs=16.9

Q ss_pred             eE-EecCcCChHHHHHHHhc
Q psy6613         149 II-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI-~GPsGvGKsTL~~rLL~  167 (510)
                      ++ +|++|||||+|..+|..
T Consensus         3 i~vvG~~~~GKtsl~~~l~~   22 (164)
T cd04101           3 CAVVGDPAVGKTAFVQMFHS   22 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            44 99999999999999985

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd00879 Sar1 Sar1 subfamily

Probab=82.67  E-value=1.1  Score=41.48  Aligned_cols=21  Identities=14%  Similarity=0.044  Sum_probs=18.5

Q ss_pred             CCeE-EecCcCChHHHHHHHhc
Q psy6613         147 GMII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      .+++ +||+|||||||.++|..
T Consensus        20 ~ki~ilG~~~~GKStLi~~l~~   41 (190)
T cd00879          20 AKILFLGLDNAGKTTLLHMLKD   41 (190)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4555 99999999999999987

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd00157 Rho Rho (Ras homology) family

Probab=82.66  E-value=0.88  Score=40.88  Aligned_cols=20  Identities=10%  Similarity=0.006  Sum_probs=17.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus         2 ki~i~G~~~~GKSsli~~l~~   22 (171)
T cd00157           2 KIVVVGDGAVGKTCLLISYTT   22 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            344 99999999999999997

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=82.64  E-value=1.1  Score=39.41  Aligned_cols=18  Identities=17%  Similarity=0.074  Sum_probs=16.4

Q ss_pred             EEecCcCChHHHHHHHhc
Q psy6613         150 IITRVTADISLAKRSLMS  167 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~  167 (510)
                      ++|++|+|||||.+.|..
T Consensus         4 l~G~~g~GKTtL~~~l~~   21 (170)
T cd01876           4 FAGRSNVGKSSLINALTN   21 (170)
T ss_pred             EEcCCCCCHHHHHHHHhc
Confidence            389999999999999993

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04123 Rab21 Rab21 subfamily

Probab=82.59  E-value=0.91  Score=40.07  Aligned_cols=18  Identities=0%  Similarity=-0.082  Sum_probs=16.8

Q ss_pred             EEecCcCChHHHHHHHhc
Q psy6613         150 IITRVTADISLAKRSLMS  167 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~  167 (510)
                      ++|++|+||||+.++|+.
T Consensus         5 i~G~~~~GKStli~~l~~   22 (162)
T cd04123           5 LLGEGRVGKTSLVLRYVE   22 (162)
T ss_pred             EECCCCCCHHHHHHHHHh
Confidence            399999999999999997

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=82.52  E-value=1.1  Score=40.25  Aligned_cols=20  Identities=10%  Similarity=-0.011  Sum_probs=17.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||+|.++|..
T Consensus         2 ~i~~~G~~~~GKssli~~l~~   22 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTR   22 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhc
Confidence            344 99999999999999998

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=82.49  E-value=2.6  Score=48.38  Aligned_cols=19  Identities=11%  Similarity=0.015  Sum_probs=16.3

Q ss_pred             eEEecCcCChHHHHHHHhc
Q psy6613         149 IIITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~  167 (510)
                      +|.||.|+||+|+.+.|.+
T Consensus        42 Lf~Gp~GvGKTTlAr~lAk   60 (647)
T PRK07994         42 LFSGTRGVGKTTIARLLAK   60 (647)
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3499999999999987766

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=82.48  E-value=1  Score=39.13  Aligned_cols=17  Identities=6%  Similarity=-0.097  Sum_probs=15.2

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      .||+|+|||++++++..
T Consensus        10 ~G~~G~GKT~~~~~~~~   26 (131)
T PF13401_consen   10 SGPPGSGKTTLIKRLAR   26 (131)
T ss_dssp             EE-TTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            99999999999999887

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=82.47  E-value=4.9  Score=42.44  Aligned_cols=19  Identities=11%  Similarity=0.046  Sum_probs=16.6

Q ss_pred             eEEecCcCChHHHHHHHhc
Q psy6613         149 IIITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~  167 (510)
                      ++.||.|+||||+.+.+.+
T Consensus        42 L~~Gp~G~GKTtla~~la~   60 (363)
T PRK14961         42 LLSGTRGVGKTTIARLLAK   60 (363)
T ss_pred             EEecCCCCCHHHHHHHHHH
Confidence            3499999999999998876

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=82.35  E-value=1.2  Score=39.64  Aligned_cols=18  Identities=17%  Similarity=-0.071  Sum_probs=16.8

Q ss_pred             EEecCcCChHHHHHHHhc
Q psy6613         150 IITRVTADISLAKRSLMS  167 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~  167 (510)
                      ++|++|+|||+|.++|+.
T Consensus         4 iiG~~~~GKssli~~~~~   21 (158)
T cd00878           4 ILGLDGAGKTTILYKLKL   21 (158)
T ss_pred             EEcCCCCCHHHHHHHHhc
Confidence            399999999999999998

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=82.26  E-value=0.94  Score=40.17  Aligned_cols=20  Identities=15%  Similarity=0.054  Sum_probs=17.6

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~   22 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMY   22 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            344 99999999999999986

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=82.11  E-value=0.96  Score=45.67  Aligned_cols=17  Identities=24%  Similarity=0.049  Sum_probs=14.7

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||||+||||+.+-|=.
T Consensus        39 IGPSGcGKST~LR~lNR   55 (253)
T COG1117          39 IGPSGCGKSTLLRCLNR   55 (253)
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            99999999999886544

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=81.99  E-value=0.84  Score=44.97  Aligned_cols=17  Identities=24%  Similarity=0.176  Sum_probs=15.9

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+||||+.+.|..
T Consensus         5 ~G~sGSGKTTla~~L~~   21 (220)
T cd02025           5 AGSVAVGKSTTARVLQA   21 (220)
T ss_pred             eCCCCCCHHHHHHHHHH
Confidence            89999999999998876

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd01864 Rab19 Rab19 subfamily

Probab=81.97  E-value=1.1  Score=40.48  Aligned_cols=20  Identities=20%  Similarity=0.157  Sum_probs=17.5

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|+|||||.++|+.
T Consensus         5 kv~vvG~~~~GKTsli~~l~~   25 (165)
T cd01864           5 KIILIGDSNVGKTCVVQRFKS   25 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            344 99999999999999986

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=81.94  E-value=1.2  Score=42.30  Aligned_cols=19  Identities=5%  Similarity=0.137  Sum_probs=17.3

Q ss_pred             eE-EecCcCChHHHHHHHhc
Q psy6613         149 II-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI-~GPsGvGKsTL~~rLL~  167 (510)
                      ++ +|++|||||+|.++|+.
T Consensus         3 ivivG~~~vGKTsli~~l~~   22 (201)
T cd04107           3 VLVIGDLGVGKTSIIKRYVH   22 (201)
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            44 99999999999999997

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria

Probab=81.72  E-value=1.4  Score=37.18  Aligned_cols=27  Identities=19%  Similarity=0.700  Sum_probs=22.7

Q ss_pred             cccccCCceEEEEeec------CCCceEEEEcc
Q psy6613          70 AVSFDIHEFLHIKEKY------DSNWWIGRLVK   96 (510)
Q Consensus        70 ~LsF~~GDiL~V~~~~------d~~WWqar~v~   96 (510)
                      -|+++.||.+-|.+..      +.+||+|..+.
T Consensus         3 FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi~   35 (75)
T PF11302_consen    3 FLSVKPGDTVIVQDEQEVGQKQDKDWWMGQVIH   35 (75)
T ss_pred             ccccCCCCEEEEecCccccccCCCCcEEEEEEE
Confidence            5889999999888764      67999999864

>cd01861 Rab6 Rab6 subfamily

Probab=81.72  E-value=1  Score=40.12  Aligned_cols=20  Identities=5%  Similarity=0.077  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus         2 ki~liG~~~~GKSsli~~l~~   22 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMY   22 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            344 99999999999999987

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=81.69  E-value=6.2  Score=40.53  Aligned_cols=17  Identities=6%  Similarity=0.028  Sum_probs=15.8

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|+|||||+.+|+.
T Consensus         7 ~G~~gSGKTTLi~~Li~   23 (274)
T PRK14493          7 VGYKATGKTTLVERLVD   23 (274)
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            89999999999999875

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=81.62  E-value=1.1  Score=40.51  Aligned_cols=18  Identities=6%  Similarity=0.047  Sum_probs=16.4

Q ss_pred             EEecCcCChHHHHHHHhc
Q psy6613         150 IITRVTADISLAKRSLMS  167 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~  167 (510)
                      |+|++|||||+|..+++.
T Consensus         4 vvG~~~~GKtsli~~~~~   21 (165)
T cd04146           4 VLGASGVGKSALVVRFLT   21 (165)
T ss_pred             EECCCCCcHHHHHHHHHh
Confidence            399999999999999886

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=81.35  E-value=1.1  Score=44.90  Aligned_cols=21  Identities=14%  Similarity=0.058  Sum_probs=16.4

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |-.+  +||||+|||||.+-|=.
T Consensus        31 Ge~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          31 GEFVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            4444  99999999999986543

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=81.24  E-value=1.2  Score=40.77  Aligned_cols=20  Identities=0%  Similarity=0.027  Sum_probs=17.5

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||+|.++++.
T Consensus         2 ki~vvG~~~vGKTsli~~~~~   22 (166)
T cd00877           2 KLVLVGDGGTGKTTFVKRHLT   22 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            344 99999999999999986

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=81.21  E-value=13  Score=37.36  Aligned_cols=93  Identities=16%  Similarity=0.149  Sum_probs=53.5

Q ss_pred             HHHHHcCCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCC----CcHHHHHHHHHHHHH--HHhcCC-
Q psy6613         196 YELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGK----SQTRHLNVQMVAAEK--LAQCPQ-  268 (510)
Q Consensus       196 ~~vi~sGKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt----~~~e~i~kRL~aa~e--LEq~~~-  268 (510)
                      +.+++.+..||+|--=.|  -.++  .=.++=||+.....+.-++|++....    ..-+++...|.+-++  ..+..+ 
T Consensus       114 r~~a~~~~~~V~dGRDiG--TvV~--PdA~lKiFLtAS~e~RA~RR~~q~~~~g~~~~~e~ll~eI~~RD~~D~~R~~~P  189 (222)
T COG0283         114 RAFAKNGPGIVADGRDIG--TVVF--PDAELKIFLTASPEERAERRYKQLQAKGFSEVFEELLAEIKERDERDSNRAVAP  189 (222)
T ss_pred             HHHHhcCCCEEEecCCCc--ceEC--CCCCeEEEEeCCHHHHHHHHHHHHHhccCcchHHHHHHHHHHhhhccccCcCCC
Confidence            344555677899875555  1111  11367799999877777777765432    223666666633322  222222 


Q ss_pred             --CCccEEEe-CC--CHHHHHHHHHHHHH
Q psy6613         269 --EMFDVILD-EN--QLEDACEHIAEYLE  292 (510)
Q Consensus       269 --~~FD~VIv-ND--dLd~A~~eL~~ile  292 (510)
                        .--|.+++ ++  .++++++++..+++
T Consensus       190 Lk~A~DA~~iDTs~msieeVv~~il~~~~  218 (222)
T COG0283         190 LKPAEDALLLDTSSLSIEEVVEKILELIR  218 (222)
T ss_pred             CcCCCCeEEEECCCCcHHHHHHHHHHHHH
Confidence              22477775 33  37888888876665

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=81.15  E-value=1.2  Score=39.99  Aligned_cols=18  Identities=17%  Similarity=0.039  Sum_probs=16.5

Q ss_pred             EEecCcCChHHHHHHHhc
Q psy6613         150 IITRVTADISLAKRSLMS  167 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~  167 (510)
                      |+|++|+|||||.++|..
T Consensus         4 ~vG~~~~GKstLi~~l~~   21 (167)
T cd04160           4 ILGLDNAGKTTFLEQLKT   21 (167)
T ss_pred             EEecCCCCHHHHHHHHhh
Confidence            399999999999999876

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=81.14  E-value=1.4  Score=41.51  Aligned_cols=17  Identities=18%  Similarity=-0.083  Sum_probs=15.9

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+|||||.+.|..
T Consensus        24 ~G~nGsGKSTLl~~i~G   40 (190)
T TIGR01166        24 LGANGAGKSTLLLHLNG   40 (190)
T ss_pred             ECCCCCCHHHHHHHHhC
Confidence            99999999999998876

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=81.12  E-value=1.2  Score=42.52  Aligned_cols=17  Identities=18%  Similarity=-0.011  Sum_probs=15.8

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+|||||.+-|..
T Consensus        33 ~G~nGsGKSTLl~~l~G   49 (211)
T cd03225          33 VGPNGSGKSTLLRLLNG   49 (211)
T ss_pred             ECCCCCCHHHHHHHHhc
Confidence            99999999999998876

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd04134 Rho3 Rho3 subfamily

Probab=81.08  E-value=1.3  Score=41.68  Aligned_cols=20  Identities=0%  Similarity=-0.021  Sum_probs=17.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||+|..+++.
T Consensus         2 kivivG~~~vGKTsli~~~~~   22 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTR   22 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            455 99999999999999987

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=81.08  E-value=1.2  Score=39.72  Aligned_cols=19  Identities=16%  Similarity=0.050  Sum_probs=17.2

Q ss_pred             eE-EecCcCChHHHHHHHhc
Q psy6613         149 II-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI-~GPsGvGKsTL~~rLL~  167 (510)
                      ++ +|++|||||+|.+++..
T Consensus         2 i~i~G~~~~GKTsl~~~~~~   21 (160)
T cd04156           2 VLLLGLDSAGKSTLLYKLKH   21 (160)
T ss_pred             EEEEcCCCCCHHHHHHHHhc
Confidence            44 99999999999999987

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=81.05  E-value=2.1  Score=46.22  Aligned_cols=22  Identities=5%  Similarity=0.203  Sum_probs=18.1

Q ss_pred             CCCeEEecCcCChHHHHHHHhc
Q psy6613         146 PGMIIITRVTADISLAKRSLMS  167 (510)
Q Consensus       146 ~~RpI~GPsGvGKsTL~~rLL~  167 (510)
                      .+-++.||+|+|||++.+.+..
T Consensus       180 kgvLL~GppGTGKT~LAkalA~  201 (398)
T PTZ00454        180 RGVLLYGPPGTGKTMLAKAVAH  201 (398)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3344499999999999998887

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=81.04  E-value=7.1  Score=36.02  Aligned_cols=54  Identities=24%  Similarity=0.337  Sum_probs=31.9

Q ss_pred             ccHHHHHHHHHcCCeEEEEeccCC----chhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCC
Q psy6613         190 TEIERVYELASTLQLVVLDCDTIN----HPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGK  247 (510)
Q Consensus       190 TslesI~~vi~sGKi~ILDID~qg----~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt  247 (510)
                      ...+.+.+++..+ .||+.+-.-.    ...++++  -..++|||.. +.+++.+|+..++.
T Consensus        50 ~E~~~l~~l~~~~-~~VIa~GGG~~~~~~~~~~L~--~~g~vI~L~~-~~~~l~~Rl~~~~~  107 (158)
T PF01202_consen   50 LESEALRELLKEN-NCVIACGGGIVLKEENRELLK--ENGLVIYLDA-DPEELAERLRARDN  107 (158)
T ss_dssp             HHHHHHHHHHCSS-SEEEEE-TTGGGSHHHHHHHH--HHSEEEEEE---HHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhccC-cEEEeCCCCCcCcHHHHHHHH--hCCEEEEEeC-CHHHHHHHHhCCCC
Confidence            4666777777776 7777773311    0022223  1356888866 57888888877654

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=81.03  E-value=1.4  Score=42.38  Aligned_cols=18  Identities=17%  Similarity=-0.014  Sum_probs=16.3

Q ss_pred             EEecCcCChHHHHHHHhc
Q psy6613         150 IITRVTADISLAKRSLMS  167 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~  167 (510)
                      |+||+|+|||||.+.|..
T Consensus        35 l~G~nGsGKSTLl~~i~G   52 (218)
T cd03255          35 IVGPSGSGKSTLLNILGG   52 (218)
T ss_pred             EEcCCCCCHHHHHHHHhC
Confidence            399999999999998876

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR00767 rho transcription termination factor Rho

Probab=81.02  E-value=3.1  Score=45.38  Aligned_cols=64  Identities=19%  Similarity=0.200  Sum_probs=37.7

Q ss_pred             EEecCcCChHHHHHHHhc-C----CCCceee-ec-CCCchh--hhhhhc--------------------ccHHHHHHHHH
Q psy6613         150 IITRVTADISLAKRSLMS-N----PSKRAIM-ER-SNSRSS--VLTEVQ--------------------TEIERVYELAS  200 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~-~----P~~F~~s-Vs-hTTR~p--Fe~~I~--------------------TslesI~~vi~  200 (510)
                      |+||+|+|||||.+.+.+ .    ++...+. +. ...+..  |.+.+.                    +-.+..+....
T Consensus       173 IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~  252 (415)
T TIGR00767       173 IVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE  252 (415)
T ss_pred             EECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHHHHH
Confidence            499999999999998776 2    3222222 22 211222  332220                    22334445567


Q ss_pred             cCCeEEEEeccCC
Q psy6613         201 TLQLVVLDCDTIN  213 (510)
Q Consensus       201 sGKi~ILDID~qg  213 (510)
                      .|+.|||=+|--.
T Consensus       253 ~GkdVVLlIDEit  265 (415)
T TIGR00767       253 HKKDVVILLDSIT  265 (415)
T ss_pred             cCCCeEEEEEChh
Confidence            8999999998744

Members of this family differ in the specificity of RNA binding.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=80.90  E-value=1.2  Score=38.23  Aligned_cols=20  Identities=15%  Similarity=0.154  Sum_probs=17.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|+|||||.+.|+.
T Consensus         3 ki~~~G~~~~GKstl~~~l~~   23 (161)
T TIGR00231         3 KIVIVGDPNVGKSTLLNRLLG   23 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            455 99999999999999987

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01865 Rab3 Rab3 subfamily

Probab=80.85  E-value=1.2  Score=40.37  Aligned_cols=20  Identities=5%  Similarity=-0.041  Sum_probs=17.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|+.|||||||.++|+.
T Consensus         3 ki~i~G~~~~GKSsli~~l~~   23 (165)
T cd01865           3 KLLIIGNSSVGKTSFLFRYAD   23 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            344 99999999999999997

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=80.80  E-value=1.5  Score=42.78  Aligned_cols=17  Identities=18%  Similarity=0.081  Sum_probs=16.0

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+|||||.+.|..
T Consensus        32 ~G~nGsGKSTLl~~l~G   48 (235)
T cd03261          32 IGPSGSGKSTLLRLIVG   48 (235)
T ss_pred             ECCCCCCHHHHHHHHhC
Confidence            99999999999998876

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=80.76  E-value=1.1  Score=40.35  Aligned_cols=20  Identities=10%  Similarity=-0.004  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||+|.++|+.
T Consensus         4 ki~i~G~~~vGKSsli~~~~~   24 (166)
T cd01869           4 KLLLIGDSGVGKSCLLLRFAD   24 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            344 99999999999999987

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=80.70  E-value=1.8  Score=45.48  Aligned_cols=22  Identities=9%  Similarity=0.226  Sum_probs=18.3

Q ss_pred             CCCeEEecCcCChHHHHHHHhc
Q psy6613         146 PGMIIITRVTADISLAKRSLMS  167 (510)
Q Consensus       146 ~~RpI~GPsGvGKsTL~~rLL~  167 (510)
                      .+-++.||+|+|||++.+.+..
T Consensus       157 ~gvLL~GppGtGKT~lakaia~  178 (364)
T TIGR01242       157 KGVLLYGPPGTGKTLLAKAVAH  178 (364)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3444599999999999999887

Many proteins may score above the trusted cutoff because an internal

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=80.68  E-value=1.3  Score=42.56  Aligned_cols=17  Identities=12%  Similarity=0.081  Sum_probs=15.9

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+|||||.+.|..
T Consensus        35 ~G~nGsGKSTLl~~l~G   51 (216)
T TIGR00960        35 VGHSGAGKSTFLKLILG   51 (216)
T ss_pred             ECCCCCCHHHHHHHHhC
Confidence            99999999999998876

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=80.65  E-value=10  Score=43.87  Aligned_cols=19  Identities=11%  Similarity=0.041  Sum_probs=16.2

Q ss_pred             eEEecCcCChHHHHHHHhc
Q psy6613         149 IIITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~  167 (510)
                      ++.||.|+||||+.+.|.+
T Consensus        41 LF~GPpGvGKTTlAriLAK   59 (702)
T PRK14960         41 LFTGTRGVGKTTIARILAK   59 (702)
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            4499999999999987765

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=80.65  E-value=1.2  Score=35.82  Aligned_cols=17  Identities=12%  Similarity=0.026  Sum_probs=16.0

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|+||||+.+.|.+
T Consensus         5 ~G~~gsGKst~~~~l~~   21 (69)
T cd02019           5 TGGSGSGKSTVAKKLAE   21 (69)
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            89999999999998887

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=80.61  E-value=1.2  Score=40.92  Aligned_cols=20  Identities=10%  Similarity=0.034  Sum_probs=17.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus         3 kv~l~G~~g~GKTtl~~~~~~   23 (180)
T cd04137           3 KIAVLGSRSVGKSSLTVQFVE   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            555 99999999999999986

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=80.58  E-value=1.3  Score=42.43  Aligned_cols=20  Identities=5%  Similarity=0.034  Sum_probs=17.0

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++++.
T Consensus        11 kv~liG~~g~GKTtLi~~~~~   31 (215)
T PTZ00132         11 KLILVGDGGVGKTTFVKRHLT   31 (215)
T ss_pred             eEEEECCCCCCHHHHHHHHHh
Confidence            454 99999999999987765

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=80.52  E-value=1.4  Score=45.24  Aligned_cols=21  Identities=19%  Similarity=0.145  Sum_probs=18.5

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |.++  +||+||||||+.+.|..
T Consensus        31 Gei~gllG~NGAGKTTllk~l~g   53 (293)
T COG1131          31 GEIFGLLGPNGAGKTTLLKILAG   53 (293)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhC
Confidence            4565  99999999999999987

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=80.46  E-value=1.5  Score=40.63  Aligned_cols=20  Identities=5%  Similarity=0.115  Sum_probs=18.1

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|..|||||+|.++++.
T Consensus         2 ki~ivG~~~vGKTsli~~~~~   22 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCK   22 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            455 99999999999999997

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=80.45  E-value=1.4  Score=42.33  Aligned_cols=17  Identities=6%  Similarity=0.028  Sum_probs=16.2

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|+|||||.++|+.
T Consensus        12 vG~sgsGKTTLi~~li~   28 (173)
T PRK10751         12 AAWSGTGKTTLLKKLIP   28 (173)
T ss_pred             ECCCCChHHHHHHHHHH
Confidence            89999999999999987

>KOG3220|consensus

Probab=80.34  E-value=21  Score=35.87  Aligned_cols=81  Identities=20%  Similarity=0.313  Sum_probs=48.8

Q ss_pred             HHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHH----HHHHhcCCCCccE
Q psy6613         199 ASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAA----EKLAQCPQEMFDV  273 (510)
Q Consensus       199 i~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa----~eLEq~~~~~FD~  273 (510)
                      +.--+.||||+..-   .+. +. .+.-.+|-+-.+.-.+|++.++. +.-+++....|+.+-    ++.++.     |+
T Consensus       104 l~G~r~ivlDiPLL---FE~-~~~~~~~~tvvV~cd~~~Ql~Rl~~R-d~lse~dAe~Rl~sQmp~~~k~~~a-----~~  173 (225)
T KOG3220|consen  104 LRGYRVIVLDIPLL---FEA-KLLKICHKTVVVTCDEELQLERLVER-DELSEEDAENRLQSQMPLEKKCELA-----DV  173 (225)
T ss_pred             hcCCeEEEEechHH---HHH-hHHhheeeEEEEEECcHHHHHHHHHh-ccccHHHHHHHHHhcCCHHHHHHhh-----he
Confidence            33456899999762   233 22 34444566666666777766654 444555666666322    334443     78


Q ss_pred             EEeC-CCHHHHHHHHHH
Q psy6613         274 ILDE-NQLEDACEHIAE  289 (510)
Q Consensus       274 VIvN-DdLd~A~~eL~~  289 (510)
                      ||.| .++++.++++..
T Consensus       174 Vi~Nng~~~~l~~qv~~  190 (225)
T KOG3220|consen  174 VIDNNGSLEDLYEQVEK  190 (225)
T ss_pred             eecCCCChHHHHHHHHH
Confidence            9975 568888888873

>cd04122 Rab14 Rab14 subfamily

Probab=80.27  E-value=1.4  Score=39.89  Aligned_cols=20  Identities=15%  Similarity=0.051  Sum_probs=17.6

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|+.|||||+|.++|..
T Consensus         4 ki~iiG~~~vGKTsli~~~~~   24 (166)
T cd04122           4 KYIIIGDMGVGKSCLLHQFTE   24 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            344 99999999999999987

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=80.24  E-value=1.3  Score=47.61  Aligned_cols=31  Identities=13%  Similarity=0.030  Sum_probs=26.1

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS  183 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p  183 (510)
                      +|.++||||||.+.|.. .|  .....|.|||.|
T Consensus       165 VG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p  196 (390)
T PRK12298        165 LGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVP  196 (390)
T ss_pred             EcCCCCCHHHHHHHHhCCcc--cccCCCCCccCc
Confidence            89999999999999998 66  234468899998

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=80.23  E-value=4  Score=47.10  Aligned_cols=19  Identities=11%  Similarity=0.043  Sum_probs=16.4

Q ss_pred             eEEecCcCChHHHHHHHhc
Q psy6613         149 IIITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~  167 (510)
                      +|.||.|+||+|+.+.|.+
T Consensus        42 LFtGP~GvGKTTLAriLAk   60 (700)
T PRK12323         42 LFTGTRGVGKTTLSRILAK   60 (700)
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            4499999999999988776

>KOG0738|consensus

Probab=80.21  E-value=8  Score=42.30  Aligned_cols=83  Identities=12%  Similarity=0.241  Sum_probs=48.8

Q ss_pred             CeEEecCcCChHHHHHHHhc-CCCCceeeecCCCchh-hhhhhcccHHHHHHHHHcCCeEEEEeccCCchhHhhhcCCCc
Q psy6613         148 MIIITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-VLTEVQTEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSP  225 (510)
Q Consensus       148 RpI~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-Fe~~I~TslesI~~vi~sGKi~ILDID~qg~~lq~lks~l~P  225 (510)
                      -+++||+|.|||.|.+.+.. .--.| |-|+.+|=.. .-.+   | +.+-+       |+||+          -....|
T Consensus       248 vLm~GPPGTGKTlLAKAvATEc~tTF-FNVSsstltSKwRGe---S-EKlvR-------lLFem----------ARfyAP  305 (491)
T KOG0738|consen  248 VLMVGPPGTGKTLLAKAVATECGTTF-FNVSSSTLTSKWRGE---S-EKLVR-------LLFEM----------ARFYAP  305 (491)
T ss_pred             eeeeCCCCCcHHHHHHHHHHhhcCeE-EEechhhhhhhhccc---h-HHHHH-------HHHHH----------HHHhCC
Confidence            34499999999999988876 32222 3355443222 1000   0 00110       01110          014578


Q ss_pred             eEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH
Q psy6613         226 CIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM  257 (510)
Q Consensus       226 ivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL  257 (510)
                      -+|||     +++......||.+++.+..+|+
T Consensus       306 StIFi-----DEIDslcs~RG~s~EHEaSRRv  332 (491)
T KOG0738|consen  306 STIFI-----DEIDSLCSQRGGSSEHEASRRV  332 (491)
T ss_pred             ceeeh-----hhHHHHHhcCCCccchhHHHHH
Confidence            89997     6788888889999887777777

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=80.18  E-value=1.3  Score=45.19  Aligned_cols=17  Identities=35%  Similarity=0.139  Sum_probs=15.5

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||||+|||||.+.|-.
T Consensus        36 IG~SGaGKSTLLR~lng   52 (258)
T COG3638          36 IGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             ECCCCCcHHHHHHHHhc
Confidence            99999999999998765

>cd04110 Rab35 Rab35 subfamily

Probab=80.17  E-value=1.4  Score=41.86  Aligned_cols=20  Identities=10%  Similarity=-0.014  Sum_probs=17.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|+.|||||+|..+|+.
T Consensus         8 kivvvG~~~vGKTsli~~l~~   28 (199)
T cd04110           8 KLLIIGDSGVGKSSLLLRFAD   28 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            455 99999999999999987

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=80.04  E-value=1.6  Score=42.38  Aligned_cols=17  Identities=12%  Similarity=0.085  Sum_probs=15.9

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+|||||.+.|..
T Consensus        19 ~G~NGsGKSTLlk~i~G   35 (213)
T PRK15177         19 LAAPGSGKTTLTRLLCG   35 (213)
T ss_pred             ECCCCCCHHHHHHHHhC
Confidence            99999999999998876

>PTZ00301 uridine kinase; Provisional

Probab=80.02  E-value=1.2  Score=43.94  Aligned_cols=70  Identities=16%  Similarity=0.214  Sum_probs=39.2

Q ss_pred             CCceEEEEeCCCHHHHHHHHH----hcCCCcHHHHHHHH-HHHH----HHHhcCCCCccEEEeC-CCHHHHHHHHHHHHH
Q psy6613         223 LSPCIVYLKISSPKVLQRLIK----SRGKSQTRHLNVQM-VAAE----KLAQCPQEMFDVILDE-NQLEDACEHIAEYLE  292 (510)
Q Consensus       223 l~PivIFIkPPS~e~L~~rLr----~Rgt~~~e~i~kRL-~aa~----eLEq~~~~~FD~VIvN-DdLd~A~~eL~~ile  292 (510)
                      +.-+.|||..|.-..+.+|++    .||.+. +...++. ....    +.-.-+.+.-|+||.+ .+.+.++.-|...|.
T Consensus       126 l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~-e~v~~~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~~~~~~~~~~~~~~  204 (210)
T PTZ00301        126 EMDCLIFVDTPLDICLIRRAKRDMRERGRTF-ESVIEQYEATVRPMYYAYVEPSKVYADIIVPSWKDNSVAVGVLRAKLN  204 (210)
T ss_pred             hCCEEEEEeCChhHHHHHHHhhhHHhcCCCH-HHHHHHHHHhhcccHHHHcCccccCCcEEEcCCCcchHHHHHHHHHHH
Confidence            445679999987666666653    255543 3334433 2111    1112234677999964 556677776664444


Q ss_pred             H
Q psy6613         293 A  293 (510)
Q Consensus       293 a  293 (510)
                      +
T Consensus       205 ~  205 (210)
T PTZ00301        205 H  205 (210)
T ss_pred             H
Confidence            3

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	510
4dey_A	337	Crystal Structure Of The Voltage Dependent Calcium		1e-102
4dey_A	337	Crystal Structure Of The Voltage Dependent Calcium		1e-43
4dex_A	339	Crystal Structure Of The Voltage Dependent Calcium		1e-102
4dex_A	339	Crystal Structure Of The Voltage Dependent Calcium		1e-43
1t3l_A	337	Structural Analysis Of The Voltage-Dependent Calciu		1e-101
1t3l_A	337	Structural Analysis Of The Voltage-Dependent Calciu		1e-43
1vyt_A	351	Beta3 Subunit Complexed With Aid Length = 351		2e-91
1vyt_A	351	Beta3 Subunit Complexed With Aid Length = 351		4e-41
1vyu_A	351	Beta3 Subunit Of Voltage-Gated Ca2+-Channel Length		1e-90
1vyu_A	351	Beta3 Subunit Of Voltage-Gated Ca2+-Channel Length		6e-39
1t0j_B	224	Crystal Structure Of A Complex Between Voltage-Gate		3e-66
1t0j_B	224	Crystal Structure Of A Complex Between Voltage-Gate		1e-43
1t0h_B	224	Crystal Structure Of The Rattus Norvegicus Voltage		1e-65
1t0h_B	224	Crystal Structure Of The Rattus Norvegicus Voltage		2e-41
1vyv_A	359	Beta4 Subunit Of Ca2+ Channel Length = 359		2e-65
1vyv_A	359	Beta4 Subunit Of Ca2+ Channel Length = 359		1e-40
1t0j_A	132	Crystal Structure Of A Complex Between Voltage-Gate		1e-36
1t0h_A	132	Crystal Structure Of The Rattus Norvegicus Voltage		7e-36

>pdb|4DEY|A Chain A, Crystal Structure Of The Voltage Dependent Calcium Channel Beta-2 Subunit In Complex With The Cav1.2 I-Ii Linker Length = 337

Iteration: 1
 Score =  369 bits (946), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/323 (60%), Positives = 233/323 (72%), Gaps = 39/323 (12%)
Query: 11  SQPS-SDLSLDXXXXXXXXXXXXQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGY 69
           S+PS SD+SL+            QA +QLEKA+ K VAFAVRTNV Y  + +DD PV G 
Sbjct: 1   SRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGM 60
Query: 70  AVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQ-ARNPKLYSS 128
           A+SF+  +FLH+KEK++++WWIGRLVKEG E GFIPSPVKLEN+RLQ  Q A+  KL+S 
Sbjct: 61  AISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQRAKEFKLHSK 120
Query: 129 --------KTSSTSNLGALSSDAP----SP------------------------GMIIIT 152
                   KT  T     + S  P     P                        G I IT
Sbjct: 121 EKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT 180
Query: 153 RVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTI 212
           RVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQLVVLD DTI
Sbjct: 181 RVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLVVLDADTI 239
Query: 213 NHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFD 272
           NHP+QL+KT+L+P +VY+KISSPKVLQRLIKSRGKSQ +HLNVQMVAA+KLAQCP E+FD
Sbjct: 240 NHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPELFD 299
Query: 273 VILDENQLEDACEHIAEYLEAYW 295
           VILDENQLEDACEH+A+YLEAYW
Sbjct: 300 VILDENQLEDACEHLADYLEAYW 322

>pdb|4DEY|A Chain A, Crystal Structure Of The Voltage Dependent Calcium Channel Beta-2 Subunit In Complex With The Cav1.2 I-Ii Linker Length = 337

Iteration: 1
 Score =  174 bits (440), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/98 (85%), Positives = 93/98 (94%), Gaps = 1/98 (1%)
Query: 408 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSLM 467
           PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRI ITRVTADISLAKRS++
Sbjct: 135 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVL 194
Query: 468 SNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQV 505
           +NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQ+
Sbjct: 195 NNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQL 231

>pdb|4DEX|A Chain A, Crystal Structure Of The Voltage Dependent Calcium Channel Beta-2 Subunit In Complex With The Cav2.2 I-Ii Linker Length = 339

Iteration: 1
 Score =  368 bits (944), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/323 (60%), Positives = 233/323 (72%), Gaps = 39/323 (12%)
Query: 11  SQPS-SDLSLDXXXXXXXXXXXXQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGY 69
           S+PS SD+SL+            QA +QLEKA+ K VAFAVRTNV Y  + +DD PV G 
Sbjct: 3   SRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGM 62
Query: 70  AVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQ-ARNPKLYSS 128
           A+SF+  +FLH+KEK++++WWIGRLVKEG E GFIPSPVKLEN+RLQ  Q A+  KL+S 
Sbjct: 63  AISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQRAKEFKLHSK 122
Query: 129 --------KTSSTSNLGALSSDAP----SP------------------------GMIIIT 152
                   KT  T     + S  P     P                        G I IT
Sbjct: 123 EKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT 182
Query: 153 RVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTI 212
           RVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQLVVLD DTI
Sbjct: 183 RVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLVVLDADTI 241
Query: 213 NHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFD 272
           NHP+QL+KT+L+P +VY+KISSPKVLQRLIKSRGKSQ +HLNVQMVAA+KLAQCP E+FD
Sbjct: 242 NHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPELFD 301
Query: 273 VILDENQLEDACEHIAEYLEAYW 295
           VILDENQLEDACEH+A+YLEAYW
Sbjct: 302 VILDENQLEDACEHLADYLEAYW 324

>pdb|4DEX|A Chain A, Crystal Structure Of The Voltage Dependent Calcium Channel Beta-2 Subunit In Complex With The Cav2.2 I-Ii Linker Length = 339

Iteration: 1
 Score =  174 bits (440), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/98 (85%), Positives = 93/98 (94%), Gaps = 1/98 (1%)
Query: 408 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSLM 467
           PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRI ITRVTADISLAKRS++
Sbjct: 137 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVL 196
Query: 468 SNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQV 505
           +NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQ+
Sbjct: 197 NNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQL 233

>pdb|1T3L|A Chain A, Structural Analysis Of The Voltage-Dependent Calcium Channel Beta Subunit Functional Core In Complex With Alpha1 Interaction Domain Length = 337

Iteration: 1
 Score =  364 bits (935), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/323 (60%), Positives = 232/323 (71%), Gaps = 39/323 (12%)
Query: 11  SQPS-SDLSLDXXXXXXXXXXXXQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGY 69
           S+PS SD+SL+            QA +QLEKA+ K VAFAVRTNV Y  + +DD PV G 
Sbjct: 1   SRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGM 60
Query: 70  AVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQ-ARNPKLYSS 128
           A+SF+  +FLH+KEK++++WWIGRLVKEG E GFIPS VKLEN+RLQ  Q A+  KL+S 
Sbjct: 61  AISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSRVKLENMRLQHEQRAKEFKLHSK 120
Query: 129 --------KTSSTSNLGALSSDAP----SP------------------------GMIIIT 152
                   KT  T     + S  P     P                        G I IT
Sbjct: 121 EKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT 180
Query: 153 RVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTI 212
           RVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQLVVLD DTI
Sbjct: 181 RVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLVVLDADTI 239
Query: 213 NHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFD 272
           NHP+QL+KT+L+P +VY+KISSPKVLQRLIKSRGKSQ +HLNVQMVAA+KLAQCP E+FD
Sbjct: 240 NHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPELFD 299
Query: 273 VILDENQLEDACEHIAEYLEAYW 295
           VILDENQLEDACEH+A+YLEAYW
Sbjct: 300 VILDENQLEDACEHLADYLEAYW 322

>pdb|1T3L|A Chain A, Structural Analysis Of The Voltage-Dependent Calcium Channel Beta Subunit Functional Core In Complex With Alpha1 Interaction Domain Length = 337

Iteration: 1
 Score =  174 bits (440), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/98 (85%), Positives = 93/98 (94%), Gaps = 1/98 (1%)
Query: 408 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSLM 467
           PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRI ITRVTADISLAKRS++
Sbjct: 135 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVL 194
Query: 468 SNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQV 505
           +NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQ+
Sbjct: 195 NNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQL 231

>pdb|1VYT|A Chain A, Beta3 Subunit Complexed With Aid Length = 351

Iteration: 1
 Score =  333 bits (853), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 181/343 (52%), Positives = 228/343 (66%), Gaps = 52/343 (15%)
Query: 4   GSAESNFSQPS--SDLSLDXXXXXXXXXXXXQALSQLEKARAKNVAFAVRTNVKYDGSID 61
           GSA+S  S+PS  SD+SL+            QA  QLE+A+ K VAFAVRTNV Y G +D
Sbjct: 1   GSADSYTSRPSLDSDVSLEEDRESARREVESQAQQQLERAKHKPVAFAVRTNVSYCGVLD 60
Query: 62  DDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRL-QQTQA 120
           ++ PV G  V+F+  +FLHIKEKY ++WWIGRLVKEG +  FIPSP +LE++RL Q+ +A
Sbjct: 61  EECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQRLESIRLKQEQKA 120
Query: 121 R---NPKLYSSKTSSTSNLGALSSD-----------------------APS--------- 145
           R   NP   S   +  S   +L+                          PS         
Sbjct: 121 RRSGNPSSLSDIGNRRSPPPSLAKQKQKQAEHVPPYDVVPSMRPVVLVGPSLKGYEVTDM 180
Query: 146 -------------PGMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEI 192
                         G I ITRVTAD+SLAKRS+++NP KR I+ERS++RSS+  EVQ+EI
Sbjct: 181 MQKALFDFLKHRFDGRISITRVTADLSLAKRSVLNNPGKRTIIERSSARSSI-AEVQSEI 239
Query: 193 ERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRH 252
           ER++ELA +LQLVVLD DTINHP+QLAKT+L+P IV++K+SSPKVLQRLI+SRGKSQ +H
Sbjct: 240 ERIFELAKSLQLVVLDADTINHPAQLAKTSLAPIIVFVKVSSPKVLQRLIRSRGKSQMKH 299
Query: 253 LNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYW 295
           L VQM+A +KL QCP E FDVILDENQL+DACEH+AEYLE YW
Sbjct: 300 LTVQMMAYDKLVQCPPESFDVILDENQLDDACEHLAEYLEVYW 342

>pdb|1VYT|A Chain A, Beta3 Subunit Complexed With Aid Length = 351

Iteration: 1
 Score =  166 bits (419), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/98 (79%), Positives = 92/98 (93%), Gaps = 1/98 (1%)
Query: 408 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSLM 467
           PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRF+GRI ITRVTAD+SLAKRS++
Sbjct: 155 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADLSLAKRSVL 214
Query: 468 SNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQV 505
           +NP KR I+ERS++RSS+  EVQ+EIER++ELA +LQ+
Sbjct: 215 NNPGKRTIIERSSARSSI-AEVQSEIERIFELAKSLQL 251

>pdb|1VYU|A Chain A, Beta3 Subunit Of Voltage-Gated Ca2+-Channel Length = 351

Iteration: 1
 Score =  330 bits (845), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 180/343 (52%), Positives = 226/343 (65%), Gaps = 52/343 (15%)
Query: 4   GSAESNFSQPS--SDLSLDXXXXXXXXXXXXQALSQLEKARAKNVAFAVRTNVKYDGSID 61
           GSA+S  S+PS  SD+SL+            QA  QLE+A+ K VAFAVRTNV Y G +D
Sbjct: 1   GSADSYTSRPSLDSDVSLEEDRESARREVESQAQQQLERAKHKPVAFAVRTNVSYCGVLD 60
Query: 62  DDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRL-QQTQA 120
           ++ PV G  V+F+  +FLHIKEKY ++WWIGRLVKEG +  FIPSP +LE++RL Q+ +A
Sbjct: 61  EECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQRLESIRLKQEQKA 120
Query: 121 R---NPKLYSSKTSSTSNLGALSSD-----------------------APS--------- 145
           R   NP   S   +  S   +L+                          PS         
Sbjct: 121 RRSGNPSSLSDIGNRRSPPPSLAKQKQKQAEHVPPYDVVPSXRPVVLVGPSLKGYEVTDX 180
Query: 146 -------------PGMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEI 192
                         G I ITRVTAD+SLAKRS+++NP KR I+ERS++RSS+  EVQ+EI
Sbjct: 181 XQKALFDFLKHRFDGRISITRVTADLSLAKRSVLNNPGKRTIIERSSARSSI-AEVQSEI 239
Query: 193 ERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRH 252
           ER++ELA +LQLVVLD DTINHP+QLAKT+L+P IV++K+SSPKVLQRLI+SRGKSQ +H
Sbjct: 240 ERIFELAKSLQLVVLDADTINHPAQLAKTSLAPIIVFVKVSSPKVLQRLIRSRGKSQXKH 299
Query: 253 LNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYW 295
           L VQ  A +KL QCP E FDVILDENQL+DACEH+AEYLE YW
Sbjct: 300 LTVQXXAYDKLVQCPPESFDVILDENQLDDACEHLAEYLEVYW 342

>pdb|1VYU|A Chain A, Beta3 Subunit Of Voltage-Gated Ca2+-Channel Length = 351

Iteration: 1
 Score =  158 bits (400), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 75/98 (76%), Positives = 89/98 (90%), Gaps = 1/98 (1%)
Query: 408 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSLM 467
           PYDVVPS RPVVLVGPSLKGYEVTD  QKALFDFLKHRF+GRI ITRVTAD+SLAKRS++
Sbjct: 155 PYDVVPSXRPVVLVGPSLKGYEVTDXXQKALFDFLKHRFDGRISITRVTADLSLAKRSVL 214
Query: 468 SNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQV 505
           +NP KR I+ERS++RSS+  EVQ+EIER++ELA +LQ+
Sbjct: 215 NNPGKRTIIERSSARSSI-AEVQSEIERIFELAKSLQL 251

>pdb|1T0J|B Chain B, Crystal Structure Of A Complex Between Voltage-Gated Calcium Channel Beta2a Subunit And A Peptide Of The Alpha1c Subunit Length = 224

Iteration: 1
 Score =  249 bits (636), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 122/150 (81%), Positives = 139/150 (92%), Gaps = 2/150 (1%)
Query: 147 GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVV 206
           G I ITRVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQLVV
Sbjct: 58  GRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLVV 116
Query: 207 LDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQC 266
           LD DTINHP+QL+KT+L+P IVY+KISSPKVLQRLIKSRGKSQ +HLNVQMVAA+KLAQC
Sbjct: 117 LDADTINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQC 176
Query: 267 -PQEMFDVILDENQLEDACEHIAEYLEAYW 295
            PQE FDVILDENQLEDACEH+A+YLEAYW
Sbjct: 177 PPQESFDVILDENQLEDACEHLADYLEAYW 206

>pdb|1T0J|B Chain B, Crystal Structure Of A Complex Between Voltage-Gated Calcium Channel Beta2a Subunit And A Peptide Of The Alpha1c Subunit Length = 224

Iteration: 1
 Score =  174 bits (441), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/98 (85%), Positives = 93/98 (94%), Gaps = 1/98 (1%)
Query: 408 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSLM 467
           PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRI ITRVTADISLAKRS++
Sbjct: 18  PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVL 77
Query: 468 SNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQV 505
           +NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQ+
Sbjct: 78  NNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQL 114

>pdb|1T0H|B Chain B, Crystal Structure Of The Rattus Norvegicus Voltage Gated Calcium Channel Beta Subunit Isoform 2a Length = 224

Iteration: 1
 Score =  247 bits (630), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/150 (80%), Positives = 138/150 (92%), Gaps = 2/150 (1%)
Query: 147 GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVV 206
           G I ITRVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQLVV
Sbjct: 58  GRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLVV 116
Query: 207 LDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQC 266
           LD DTINHP+QL+KT+L+P IVY+KISSPKVLQRLIKSRGKSQ +HLNVQ VAA+KLAQC
Sbjct: 117 LDADTINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKSRGKSQAKHLNVQXVAADKLAQC 176
Query: 267 -PQEMFDVILDENQLEDACEHIAEYLEAYW 295
            PQE FDVILDENQLEDACEH+A+YLEAYW
Sbjct: 177 PPQESFDVILDENQLEDACEHLADYLEAYW 206

>pdb|1T0H|B Chain B, Crystal Structure Of The Rattus Norvegicus Voltage Gated Calcium Channel Beta Subunit Isoform 2a Length = 224

Iteration: 1
 Score =  166 bits (421), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/98 (82%), Positives = 90/98 (91%), Gaps = 1/98 (1%)
Query: 408 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSLM 467
           PYDVVPS RPVVLVGPSLKGYEVTD  QKALFDFLKHRFEGRI ITRVTADISLAKRS++
Sbjct: 18  PYDVVPSXRPVVLVGPSLKGYEVTDXXQKALFDFLKHRFEGRISITRVTADISLAKRSVL 77
Query: 468 SNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQV 505
           +NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQ+
Sbjct: 78  NNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQL 114

>pdb|1VYV|A Chain A, Beta4 Subunit Of Ca2+ Channel Length = 359

Iteration: 1
 Score =  246 bits (628), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/149 (78%), Positives = 138/149 (92%), Gaps = 1/149 (0%)
Query: 147 GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVV 206
           G I ITRVTADISLAKRS+++NPSKRAI+ERSN++SS L EVQ+EIER++ELA +LQLVV
Sbjct: 203 GRISITRVTADISLAKRSVLNNPSKRAIIERSNTKSS-LAEVQSEIERIFELARSLQLVV 261
Query: 207 LDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQC 266
           LD DTINHP+QL KT+L+P IV++K+SSPKVLQRLIKSRGKSQ++HLNVQ+VAA+KLAQC
Sbjct: 262 LDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQC 321
Query: 267 PQEMFDVILDENQLEDACEHIAEYLEAYW 295
           P E FDVILDENQLEDACEH+ EYLEAYW
Sbjct: 322 PPEXFDVILDENQLEDACEHLGEYLEAYW 350

>pdb|1VYV|A Chain A, Beta4 Subunit Of Ca2+ Channel Length = 359

Iteration: 1
 Score =  164 bits (415), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/98 (80%), Positives = 91/98 (92%), Gaps = 1/98 (1%)
Query: 408 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSLM 467
           PYDVVPS RPVVLVGPSLKGYEVTD  QKALFDFLKHRF+GRI ITRVTADISLAKRS++
Sbjct: 163 PYDVVPSXRPVVLVGPSLKGYEVTDXXQKALFDFLKHRFDGRISITRVTADISLAKRSVL 222
Query: 468 SNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQV 505
           +NPSKRAI+ERSN++SS L EVQ+EIER++ELA +LQ+
Sbjct: 223 NNPSKRAIIERSNTKSS-LAEVQSEIERIFELARSLQL 259

>pdb|1T0J|A Chain A, Crystal Structure Of A Complex Between Voltage-Gated Calcium Channel Beta2a Subunit And A Peptide Of The Alpha1c Subunit Length = 132

Iteration: 1
 Score =  150 bits (379), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/130 (57%), Positives = 96/130 (73%), Gaps = 2/130 (1%)
Query: 3   VGSAESNFSQPS-SDLSLDXXXXXXXXXXXXQALSQLEKARAKNVAFAVRTNVKYDGSID 61
           +GSA+S  S+PS SD+SL+            QA +QLEKA+ K VAFAVRTNV+Y  + +
Sbjct: 3   MGSADSYTSRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVRYSAAQE 62
Query: 62  DDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQ-A 120
           DD PV G A+SF+  +FLH+KEK++++WWIGRLVKEG E GFIPSPVKLEN+RLQ  Q A
Sbjct: 63  DDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQRA 122
Query: 121 RNPKLYSSKT 130
           +  K YSSK+
Sbjct: 123 KQGKFYSSKS 132

>pdb|1T0H|A Chain A, Crystal Structure Of The Rattus Norvegicus Voltage Gated Calcium Channel Beta Subunit Isoform 2a Length = 132

Iteration: 1
 Score =  148 bits (374), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 75/129 (58%), Positives = 94/129 (72%), Gaps = 2/129 (1%)
Query: 4   GSAESNFSQPS-SDLSLDXXXXXXXXXXXXQALSQLEKARAKNVAFAVRTNVKYDGSIDD 62
           GSA+S  S+PS SD+SL+            QA +QLEKA+ K VAFAVRTNV+Y  + +D
Sbjct: 4   GSADSYTSRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVRYSAAQED 63
Query: 63  DSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQ-AR 121
           D PV G A+SF+  +FLH+KEK++++WWIGRLVKEG E GFIPSPVKLEN RLQ  Q A+
Sbjct: 64  DVPVPGXAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENXRLQHEQRAK 123
Query: 122 NPKLYSSKT 130
             K YSSK+
Sbjct: 124 QGKFYSSKS 132

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	510
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	2e-92
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	2e-25
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	9e-04
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	3e-21
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	3e-12
2d46_A	61	Calcium channel, voltage-dependent, beta 4 subunit	3e-11
2d46_A	61	Calcium channel, voltage-dependent, beta 4 subunit	8e-11
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	1e-07
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	2e-04
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	2e-04
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	4e-04
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	5e-04
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	6e-04
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	6e-04
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	7e-04

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A Length = 337

 Score =  284 bits (727), Expect = 2e-92
 Identities = 202/337 (59%), Positives = 243/337 (72%), Gaps = 40/337 (11%)

Query: 11  SQPS-SDLSLDEEKETLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGY 69
           S+PS SD+SL+E++E +RRE ERQA +QLEKA+ K VAFAVRTNV Y  + +DD PV G 
Sbjct: 1   SRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGM 60

Query: 70  AVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQARNPKLYSSK 129
           A+SF+  +FLH+KEK++++WWIGRLVKEG E GFIPSPVKLEN+RLQ  Q        SK
Sbjct: 61  AISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQRAKEFKLHSK 120

Query: 130 TSSTSNLGALSSDAPSPGM-------------------------------------IIIT 152
                         P   +                                     I IT
Sbjct: 121 EKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT 180

Query: 153 RVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTI 212
           RVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQLVVLD DTI
Sbjct: 181 RVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLVVLDADTI 239

Query: 213 NHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFD 272
           NHP+QL+KT+L+P +VY+KISSPKVLQRLIKSRGKSQ +HLNVQMVAA+KLAQCP E+FD
Sbjct: 240 NHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPELFD 299

Query: 273 VILDENQLEDACEHIAEYLEAYWRATHPPA-APPQPL 308
           VILDENQLEDACEH+A+YLEAYW+ATHPP+   P PL
Sbjct: 300 VILDENQLEDACEHLADYLEAYWKATHPPSSNLPNPL 336

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A Length = 337

 Score =  105 bits (263), Expect = 2e-25
 Identities = 94/131 (71%), Positives = 108/131 (82%), Gaps = 1/131 (0%)

Query: 375 ESIGNSRAGKNTLTTPTTKEKKKIFFKKQETTTPYDVVPSMRPVVLVGPSLKGYEVTDMM 434
           E++      +       +KEK+  FFKK E T PYDVVPSMRPVVLVGPSLKGYEVTDMM
Sbjct: 102 ENMRLQHEQRAKEFKLHSKEKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMM 161

Query: 435 QKALFDFLKHRFEGRIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIE 494
           QKALFDFLKHRFEGRI ITRVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIE
Sbjct: 162 QKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIE 220

Query: 495 RVYELASTLQV 505
           R++ELA TLQ+
Sbjct: 221 RIFELARTLQL 231

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A Length = 337

 Score = 40.6 bits (94), Expect = 9e-04
 Identities = 21/37 (56%), Positives = 29/37 (78%), Gaps = 1/37 (2%)

Query: 338 SQPS-SDLSLDEEKETLRREKERQALSQLEKARVTDD 373
           S+PS SD+SL+E++E +RRE ERQA +QLEKA+    
Sbjct: 1   SRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPV 37

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens} Length = 308

 Score = 93.3 bits (231), Expect = 3e-21
 Identities = 41/293 (13%), Positives = 91/293 (31%), Gaps = 57/293 (19%)

Query: 48  FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHI---------KEKYDSNWWIGRLVKEG 98
           F +RT+ + + S           + F   +  H+         +       W+   +   
Sbjct: 5   FYIRTHFELEPSPPSG-------LGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRD 57

Query: 99  S---ECGFIPSPVKLENLRLQQTQARNPKL---------------------YSSKTSSTS 134
               E G IP+  + E L   +   R   +                       +K ++  
Sbjct: 58  LREQERGIIPNQSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGAKKTTQR 117

Query: 135 NLGALSSDAPSPGMIIITRVTADISLAKRSL-MSNPSKRAIMER-------------SNS 180
           +   LS+           RV    +  KR + +  P     M++             + S
Sbjct: 118 SREDLSALTRQGRYPPYERVVLREASFKRPVVILGPVADIAMQKLTAEMPDQFEIAETVS 177

Query: 181 RSSVLTEVQTEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQR 240
           R+   +++  +++ V  +A   +  +LD    +   +L      P +V+    S   L+ 
Sbjct: 178 RTDSPSKII-KLDTVRVIAEKDKHALLDVT-PSAIERLNYVQYYPIVVFFIPESRPALKA 235

Query: 241 LIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQ-LEDACEHIAEYLE 292
           L +    +  R        A+KL +    +F   +  N   +   + +   + 
Sbjct: 236 LRQWLAPASRRSTRRLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIR 288

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A Length = 295

 Score = 66.3 bits (162), Expect = 3e-12
 Identities = 59/291 (20%), Positives = 96/291 (32%), Gaps = 52/291 (17%)

Query: 47  AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSEC---GF 103
            F +R    YD + D         +SF   + LH+ +  D  WW  R V   SE    GF
Sbjct: 1   GFYIRALFDYDKTKDCGFLSQA--LSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGF 58

Query: 104 IPSPVKLENLRLQQTQARNPKLYSSKTSSTSNLGALS------SDAPSPGMIIITRVTAD 157
           IPS  ++E     + +A++    SS  S       LS       +      III   T D
Sbjct: 59  IPSKRRVERREWSRLKAKDW--GSSSGSQGREDSVLSYETVTQMEVHYARPIIILGPTKD 116

Query: 158 ISLAKRSLMSNP---------------------------SKRAIMERSNSRSSVL--TEV 188
                  L   P                           S R  ME+       +   + 
Sbjct: 117 -RANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQY 175

Query: 189 Q-----TEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIK 243
                 T ++ V E+A   +  +LD    N   +L   +L P  ++++  S + +  +  
Sbjct: 176 NSHLYGTSVQSVREVAEQGKHCILDVS-ANAVRRLQAAHLHPIAIFIRPRSLENVLEI-- 232

Query: 244 SRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAY 294
              +            A KL Q   E F  I++ +  E+    +   +E  
Sbjct: 233 -NKRITEEQARKAFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDL 282

>2d46_A Calcium channel, voltage-dependent, beta 4 subunit isoform A; Ca2+ channel, BETA4A subunit, nuclear magnetic resonance, alternative spliving; NMR {Homo sapiens} Length = 61

 Score = 58.0 bits (139), Expect = 3e-11
 Identities = 23/42 (54%), Positives = 36/42 (85%), Gaps = 1/42 (2%)

Query: 4  GSAESNFSQPS-SDLSLDEEKETLRREKERQALSQLEKARAK 44
          GSA+S  S+PS SD+SL+E++E +R+E+E+QA  QLE+A++K
Sbjct: 19 GSADSYTSRPSDSDVSLEEDREAIRQEREQQAAIQLERAKSK 60

>2d46_A Calcium channel, voltage-dependent, beta 4 subunit isoform A; Ca2+ channel, BETA4A subunit, nuclear magnetic resonance, alternative spliving; NMR {Homo sapiens} Length = 61

 Score = 56.8 bits (136), Expect = 8e-11
 Identities = 22/43 (51%), Positives = 34/43 (79%), Gaps = 1/43 (2%)

Query: 328 PSMGSAESNFSQPS-SDLSLDEEKETLRREKERQALSQLEKAR 369
              GSA+S  S+PS SD+SL+E++E +R+E+E+QA  QLE+A+
Sbjct: 16  SEAGSADSYTSRPSDSDVSLEEDREAIRQEREQQAAIQLERAK 58

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A* Length = 292

 Score = 57.5 bits (139), Expect = 3e-09
 Identities = 50/285 (17%), Positives = 91/285 (31%), Gaps = 57/285 (20%)

Query: 50  VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSEC---GFIPS 106
           VR    YD + DD  P  G  + F   + LH+    D  WW  R V   +E    G +P 
Sbjct: 8   VRALFDYDPNRDDGLPSRG--LPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVP- 64

Query: 107 PVKLENLRLQQTQARNPKLYSSKTSSTSNLGALSSDAPS-PGMIIITRVTADISLAKRSL 165
                + R  + + R          +  +  A+   + +    +II     D  +    +
Sbjct: 65  -----SKRRWERKMRARDRSVKSEENVLSYEAVQRLSINYTRPVIILGPLKD-RINDDLI 118

Query: 166 MSNP---------------------------SKRAIMERSNSRSSVL--TEVQ-----TE 191
              P                           S R  MER       +   +       T 
Sbjct: 119 SEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTS 178

Query: 192 IERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTR 251
           +  V E+A   +  +LD    N   +L    L P  V++K  S   +  + +   + Q +
Sbjct: 179 VASVREVAEKGKHCILDVS-GNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAK 237

Query: 252 HLNVQMVAAEKLAQCPQEM---FDVILDENQLEDACEHIAEYLEA 293
               + +  E      QE    F  ++  + +E+    +   + +
Sbjct: 238 KTYERAIKME------QEFGEYFTGVVQGDTIEEIYSKVKSMIWS 276

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 3e-09
 Identities = 76/545 (13%), Positives = 142/545 (26%), Gaps = 178/545 (32%)

Query: 5   SAESNFSQPSSDLSLDEE-------------KETLRREKE----RQALSQLEKARA---- 43
             E    QPS    +  E             K  + R +     RQAL +L  A+     
Sbjct: 99  KTEQR--QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156

Query: 44  ------KNV--AFAVRTNVKYDGSIDDDSPVHGYAVSF----DIHEFLHIKEKYDSNWWI 91
                 K                 +        + ++          L + +K       
Sbjct: 157 GVLGSGKTWVALDVCL-----SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY---- 207

Query: 92  GRLVKEGSECGFIPSPVKL------ENLRLQQTQARNPK-------LYSSKTSSTSNLGA 138
            ++    +      S +KL        LR                 + ++K  +  NL  
Sbjct: 208 -QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 139 LSSDAPSPGMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYEL 198
                     I++T  T    +    L +  +    ++     S  LT  + +       
Sbjct: 267 ---------KILLT--TRFKQVT-DFLSAATTTHISLD---HHSMTLTPDEVK------- 304

Query: 199 ASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHL-NVQM 257
             +L L  LDC   + P ++  TN  P     ++S       +I    +       N + 
Sbjct: 305 --SLLLKYLDCRPQDLPREVLTTN--P----RRLS-------IIAESIRDGLATWDNWKH 349

Query: 258 VAAEKL---------AQCP---QEMFD--VILDENQLEDACEHI-AEYLEAYWRATHPPA 302
           V  +KL            P   ++MFD   +   +       HI    L   W      +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS------AHIPTILLSLIWFDV-IKS 402

Query: 303 APPQPLTLLPPRQLTAHQSVVIPPSPSMGSAESNFSQPSSDLSLDEEKETL-RREKERQA 361
                +  L    L   Q             ES  S P   + L+ + +        R  
Sbjct: 403 DVMVVVNKLHKYSLVEKQP-----------KESTISIP--SIYLELKVKLENEYALHRSI 449

Query: 362 LSQLEKARVTDDNESIGNSRAG----------KNTLTTPTTKEKKKIFF-------KKQE 404
           +      +  D ++ I                KN          + +F        K + 
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509

Query: 405 TTTPYDVVPSMRPVVL-----------------------------VGPSLKGYEVTDMMQ 435
            +T ++   S+   +                              +  +L   + TD+++
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569

Query: 436 KALFD 440
            AL  
Sbjct: 570 IALMA 574

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 6e-06
 Identities = 64/450 (14%), Positives = 122/450 (27%), Gaps = 167/450 (37%)

Query: 7   ESNFSQPSS-----DLSLDEEKETLRR----EKERQAL--------SQLEKA-------- 41
           + N++  S       L +   +  LRR    +     L        ++   A        
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 42  ---RAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEG 98
              R K V   +        S+D  S       +    E   +  K     ++       
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSM------TLTPDEVKSLLLK-----YLD------ 312

Query: 99  SECGFIPSPVKLENLRLQQTQARNPKLYSSKTSSTSNLGALSSDAPSPGMIIITRVTADI 158
                     + ++L  ++    NP+  S        +     D  +         T D 
Sbjct: 313 ---------CRPQDLP-REVLTTNPRRLSI-------IAESIRDGLA---------TWD- 345

Query: 159 SLAKRSLMSNPSK-RAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDT-INHPS 216
                    N  K   I+E S    +VL     E  ++++     +L V      I  P+
Sbjct: 346 ----NWKHVNCDKLTTIIESS---LNVLEP--AEYRKMFD-----RLSVFPPSAHI--PT 389

Query: 217 QLAKTNLSPCIVYLKISSPKV------LQR--LIKSRGKSQTRHL-NVQMVAAEKLAQCP 267
            L    L   +++  +    V      L +  L++ + K  T  + ++ +   E   +  
Sbjct: 390 IL----L--SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL---ELKVKLE 440

Query: 268 QE--MFDVILDENQLEDA---------------CEHI---------AE--------YLEA 293
            E  +   I+D   +                    HI          E        +L+ 
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500

Query: 294 YW-----RATHPPAAPPQPL--TLLPPRQLTAHQSVVIPPSPS------------MGSAE 334
            +     R           +  TL    QL  ++  +    P                 E
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQ---QLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557

Query: 335 SNFSQPSSDL---SLDEEKETLRREKERQA 361
           +      +DL   +L  E E +  E  +Q 
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFEEAHKQV 587

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 53.4 bits (127), Expect = 1e-07
 Identities = 47/283 (16%), Positives = 88/283 (31%), Gaps = 46/283 (16%)

Query: 50  VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSE---CGFIPS 106
           +R    YD + D        +  F   + LH+ +  D  WW  R V   SE    GFIPS
Sbjct: 430 IRALFDYDKTKDCGFLSQALSFRFG--DVLHVIDAGDEEWWQARRVHSDSETDDIGFIPS 487

Query: 107 PVKLENLRLQQTQARNPKLYSSKTSSTSNLGALSSDAPSPGMIIITRVTADIS---LAKR 163
             ++E     + +A++    S       ++ +  +            +    +       
Sbjct: 488 KRRVERREWSRLKAKDWGSSSGSQGREDSVLSYETVTQMEVHYARPIIILGPTKDRANDD 547

Query: 164 SLMSNPSKRAIMERSNSRSSVLTEVQ---------------------------------- 189
            L   P K        +R     E+                                   
Sbjct: 548 LLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYG 607

Query: 190 TEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQ 249
           T ++ V E+A   +  +LD    N   +L   +L P  ++++  S + +  +     +  
Sbjct: 608 TSVQSVREVAEQGKHCILDVS-ANAVRRLQAAHLHPIAIFIRPRSLENVLEI---NKRIT 663

Query: 250 TRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLE 292
                     A KL Q   E F  I++ +  E+    +   +E
Sbjct: 664 EEQARKAFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIE 706

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 9/52 (17%)

Query: 56  YDGSIDDDSPVHGYAVSFDIHEFLHI-KEKYDSNWWIGRLVKEGSECGFIPS 106
           +     D+       ++    + ++I  +K   +WW+ +LV  G   G +P+
Sbjct: 11  FMAESQDE-------LTIKSGDKVYILDDKKSKDWWMCQLVDSGKS-GLVPA 54

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 7/51 (13%)

Query: 56  YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
           + GS           +     + ++I  +  S W +G+L+    E G++P+
Sbjct: 9   FPGSGSPSE------LPLKKGDVIYITREEPSGWSLGKLLDGSKE-GWVPT 52

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 8/51 (15%)

Query: 56  YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
           YD + D++       ++F  ++ +   E  D +WW+G L K+GS+ G  PS
Sbjct: 9   YDAAEDNE-------LTFVENDKIINIEFVDDDWWLGELEKDGSK-GLFPS 51

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 8/51 (15%)

Query: 56  YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
           Y+   +DD       +SF   E   I    + +WW  R +  G   G+IPS
Sbjct: 24  YEAITEDD-------LSFHKGEKFQILNSSEGDWWEARSLTTGET-GYIPS 66

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 8/51 (15%)

Query: 56  YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
           Y+   +DD       +SF   E   I    + +WW  R +  G   G+IPS
Sbjct: 14  YEARTEDD-------LSFHKGEKFQILNSSEGDWWEARSLTTGET-GYIPS 56

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 37.1 bits (87), Expect = 6e-04
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 9/52 (17%)

Query: 56  YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSP 107
           ++G+ ++D       + F   + L I++K +  WW     + G   G IP P
Sbjct: 10  FNGNDEED-------LPFKKGDILRIRDKPEEQWWNAEDSE-GKR-GMIPVP 52

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 8/51 (15%)

Query: 56  YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
           Y+ +   D       +SF   E   I E    +WW  R +  G   G+IPS
Sbjct: 15  YNATRWTD-------LSFHKGEKFQILEFGPGDWWEARSLTTGET-GYIPS 57

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	510
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	100.0
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	100.0
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	100.0
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	100.0
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	100.0
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	100.0
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	100.0
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	100.0
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	100.0
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	99.95
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	99.91
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	99.89
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	99.88
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.85
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.84
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.82
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.75
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.69
2d46_A	61	Calcium channel, voltage-dependent, beta 4 subunit	99.67
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.61
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	99.51
2d46_A	61	Calcium channel, voltage-dependent, beta 4 subunit	99.39
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.31
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.25
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.24
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.22
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.2
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.19
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.16
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.14
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.13
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.12
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.12
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.11
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.11
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.11
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.11
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.11
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.11
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.1
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.1
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.1
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.1
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.1
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.1
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.1
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.09
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.09
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.09
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.09
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.09
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.09
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.08
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.08
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.08
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.08
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.08
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.07
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.07
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.07
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.06
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.06
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.06
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.06
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.06
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.05
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.05
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.05
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.05
3u23_A	65	CD2-associated protein; structural genomics, struc	99.05
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.05
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.04
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.04
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.04
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.04
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.04
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.04
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.04
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.04
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.04
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.04
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.04
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.04
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.04
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.04
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.04
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.03
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.03
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.03
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.03
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.03
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.03
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.03
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.03
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.03
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.02
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.02
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.02
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.02
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.02
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.01
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.01
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.01
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.01
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.01
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.01
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.01
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.01
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.01
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.0
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.0
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.0
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.0
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.0
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.0
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.0
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.0
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.0
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	98.99
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	98.99
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	98.99
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	98.99
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	98.99
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	98.99
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	98.99
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	98.99
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	98.98
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	98.98
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	98.98
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	98.98
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	98.98
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	98.98
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	98.98
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	98.98
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	98.97
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	98.97
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	98.97
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	98.97
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	98.97
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	98.97
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	98.97
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	98.97
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	98.97
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	98.96
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	98.96
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	98.96
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	98.96
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	98.96
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	98.96
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	98.96
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	98.95
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	98.95
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	98.95
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	98.95
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	98.95
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	98.94
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	98.94
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	98.94
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	98.94
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	98.94
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	98.94
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	98.93
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	98.93
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	98.93
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	98.93
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	98.93
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	98.93
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	98.93
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	98.93
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	98.92
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	98.92
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	98.92
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	98.91
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	98.91
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	98.91
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	98.9
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	98.9
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	98.9
1awj_A	77	ITK; transferase, regulatory intramolecular comple	98.89
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	98.88
1wxb_A	68	Epidermal growth factor receptor pathway substrate	98.88
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	98.88
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	98.86
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	98.86
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	98.85
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	98.82
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	98.81
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	98.79
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	98.79
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	98.79
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	98.78
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	98.77
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	98.74
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	98.71
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	98.68
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	98.67
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	98.67
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	98.67
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	98.65
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	98.63
1u3o_A	82	Huntingtin-associated protein-interacting protein;	98.57
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	98.56
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	98.54
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	98.53
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	98.53
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	98.52
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	98.49
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	98.45
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	98.45
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	98.43
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	98.43
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	98.42
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	98.37
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	98.36
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	98.34
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	98.31
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	97.64
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	98.3
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	98.3
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	97.63
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	98.29
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.28
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.27
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.26
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	98.24
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	98.24
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	98.23
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	98.22
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	98.17
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	98.11
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	98.09
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	98.09
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	98.08
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	98.07
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.07
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	98.02
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.95
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	97.92
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.91
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	97.9
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.9
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.89
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.88
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.87
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.86
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.85
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.83
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.82
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	97.76
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.75
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.74
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.73
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.71
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.71
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.7
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	97.69
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.68
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.64
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.63
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.53
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.53
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.51
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	97.5
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.38
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	97.36
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.36
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.35
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.34
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.34
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	97.32
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.31
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.25
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.23
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.17
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.14
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.11
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.99
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	96.86
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.81
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.8
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.78
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.73
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	96.71
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.71
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.7
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.69
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.58
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	96.56
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.54
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.54
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.54
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.52
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.45
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.45
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.4
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.39
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.39
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.36
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.33
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	96.33
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	96.32
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.29
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.28
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.27
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.24
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.24
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.18
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	96.13
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.09
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.94
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.88
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.88
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	95.73
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.63
1via_A	175	Shikimate kinase; structural genomics, transferase	95.52
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.36
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.29
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	95.29
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	95.24
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.16
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	95.12
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	95.11
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	94.82
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	94.8
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	94.53
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	94.29
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.28
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	94.26
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	94.23
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	93.71
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	93.35
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	93.32
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	93.01
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	92.81
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	92.56
3pvs_A	447	Replication-associated recombination protein A; ma	91.02
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	90.74
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	89.92
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	89.85
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	89.7
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	89.41
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	89.0
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	87.69
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	87.56
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	87.43
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	87.43
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	87.34
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	87.2
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	86.69
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	86.29
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	86.22
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	86.22
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	86.1
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	85.86
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	85.71
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	85.7
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	85.69
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	85.6
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	85.57
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	85.53
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	85.47
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	85.46
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	85.39
2ged_A	193	SR-beta, signal recognition particle receptor beta	85.26
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	85.24
4a74_A	231	DNA repair and recombination protein RADA; hydrola	85.11
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	84.98
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	84.97
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	84.91
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	84.76
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	84.74
2wji_A	165	Ferrous iron transport protein B homolog; membrane	84.64
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	84.6
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	84.6
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	84.57
1b0u_A	262	Histidine permease; ABC transporter, transport pro	84.52
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	84.33
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	84.14
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	84.02
1g6h_A	257	High-affinity branched-chain amino acid transport	83.98
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	83.96
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	83.87
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	83.83
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	83.8
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	83.75
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	83.74
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	83.66
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	83.59
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	83.55
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	83.51
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	83.48
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	83.41
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	83.34
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	83.3
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	83.27
1ji0_A	240	ABC transporter; ATP binding protein, structural g	83.22
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	83.22
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	83.09
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	83.0
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	82.96
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	82.93
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	82.85
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	82.79
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	82.76
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	82.54
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	82.51
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	82.51
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	82.46
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	82.44
3llu_A	196	RAS-related GTP-binding protein C; structural geno	82.4
1sgw_A	214	Putative ABC transporter; structural genomics, P p	82.39
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	82.36
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	82.3
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	82.29
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	82.25
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	82.21
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	82.19
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	82.15
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	82.14
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	82.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	81.91
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	81.87
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	81.86
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	81.85
2ghi_A	260	Transport protein; multidrug resistance protein, M	81.79
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	81.76
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	81.73
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	81.7
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	81.67
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	81.65
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	81.64
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	81.62
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	81.59
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	81.57
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	81.57
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	81.46
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	81.45
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	81.44
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	81.38
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	81.35
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	81.34
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	81.29
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	81.29
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	81.27
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	81.25
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	81.23
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	80.98
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	80.92
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	80.88
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	80.88
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	80.84
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	80.81
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	80.79
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	80.46
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	80.42
2eyu_A	261	Twitching motility protein PILT; pilus retraction	80.39
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	80.37
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	80.35
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	80.34
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	80.32
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	80.29
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	80.29
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	80.28
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	80.23

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=100.00  E-value=4.2e-60  Score=484.93  Aligned_cols=293  Identities=56%  Similarity=0.867  Sum_probs=223.4

Q ss_pred             CcCC-CCccchhhhHHHhHHHHHHHHHHHhhhccCCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCc
Q psy6613          11 SQPS-SDLSLDEEKETLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNW   89 (510)
Q Consensus        11 ~~~~-~d~~~~~~~~~~~~~~~~~a~~~L~~a~~k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~W   89 (510)
                      |||| ||+|+|+|.|++|+|+|++|+.||++|+.|++.+||||+|||+|..|+++||++++|+|++||||+|+++.|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~k~~~~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~W   80 (337)
T 4dey_A            1 SRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDW   80 (337)
T ss_dssp             ----------CTTGGGHHHHHHHHHHHHHHHTSSSCCCEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSE
T ss_pred             CCCCccccchhhHHHHHHHHHHHHHHHhhhhccCCCccEEEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCCe
Confidence            6899 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEccCCCceeeecChhHHHHHHHHhhhcc-CCCcccccC--C-CCCCCC-CCCCCCCCCCCeE-EecCcCChHH---
Q psy6613          90 WIGRLVKEGSECGFIPSPVKLENLRLQQTQAR-NPKLYSSKT--S-STSNLG-ALSSDAPSPGMII-ITRVTADISL---  160 (510)
Q Consensus        90 Wqar~v~~~~~~GlIPS~~~~Errr~~~~~kk-~~~l~~sk~--~-s~~~~~-~~~~d~Ps~~RpI-~GPsGvGKsT---  160 (510)
                      |+||+++++|..|||||+.++|+++..+.++. +..+..++.  . ...+.. .-+..+|+.+-+| +||++.|-.+   
T Consensus        81 Wqar~~~~~g~~GlIPS~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~Ye~vp~~RPvvlvGP~~~g~~~td~  160 (337)
T 4dey_A           81 WIGRLVKEGCEIGFIPSPVKLENMRLQHEQRAKEFKLHSKEKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDM  160 (337)
T ss_dssp             EEEEESSTTCCCEEEECHHHHHHHHHHHHHHCC-------------------CCSEEEECSSCCEEEECSSCTTSHHHHH
T ss_pred             EEEEECCCCCCccEecCHHHHHHHHHhhhhccccCCCCcccccccccccCCCCCCccccCCCCceEEECCccccchhHHH
Confidence            99999987788999999999999988765421 111100000  0 001100 0112236554444 9999999874   


Q ss_pred             HHHHHhc-CCCCceeeecCCCchh-------------------hhhhh--------cccHHHHHHHHHcCCeEEEEeccC
Q psy6613         161 AKRSLMS-NPSKRAIMERSNSRSS-------------------VLTEV--------QTEIERVYELASTLQLVVLDCDTI  212 (510)
Q Consensus       161 L~~rLL~-~P~~F~~sVshTTR~p-------------------Fe~~I--------~TslesI~~vi~sGKi~ILDID~q  212 (510)
                      +.+.|+. .+.+|...|++| |.+                   |+..+        ++.+++|.++.++|++||||||+|
T Consensus       161 m~~~l~d~l~~~F~~~i~~t-R~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~~~ev~seVe~i~~v~~~Gk~vILDIDvQ  239 (337)
T 4dey_A          161 MQKALFDFLKHRFEGRISIT-RVTADISLAKRSVLNNPSKHAIIERSNTRSSLAEVQSEIERIFELARTLQLVVLDADTI  239 (337)
T ss_dssp             HHHHHHHHHHHHTTTSEEEE-EECSCGGGC-------------------CCCHHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred             HHHHHHHhhHHhcCCccceE-eecchhhhcchhhhhcccchhhhcccccccchHHHHhHHHHHHHHHhCCCEEEEEeCcH
Confidence            4556766 667777777665 333                   33222        268888999999999999999999


Q ss_pred             -CchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEEEeCCCHHHHHHHHHHH
Q psy6613         213 -NHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEY  290 (510)
Q Consensus       213 -g~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~VIvNDdLd~A~~eL~~i  290 (510)
                       |  ++.++. .++|++|||+|||+++|++||++||++..+.+.++|+.++++.+++.+.|||||+||||+.||++|.+|
T Consensus       240 nG--a~qlk~~~~~~i~IFI~PPS~eeLe~RL~~RGt~~~~rl~~al~~ae~E~~~~~~~FDyvIVNDdLe~A~~~L~~i  317 (337)
T 4dey_A          240 NH--PAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPELFDVILDENQLEDACEHLADY  317 (337)
T ss_dssp             CS--GGGTTTSSCCCEEEEECCSCHHHHHHHHHTTCHHHHTTHHHHHHHHHHHHHSCGGGCSEEECCSSHHHHHHHHHHH
T ss_pred             HH--HHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhCcccCCEEEECCCHHHHHHHHHHH
Confidence             9  666666 789999999999999999999999986666666666555555566789999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCC
Q psy6613         291 LEAYWRATHPPAAPPQ  306 (510)
Q Consensus       291 leai~~a~h~p~~~p~  306 (510)
                      |++||++.|+|...|+
T Consensus       318 I~~~~~~~h~~~~~~~  333 (337)
T 4dey_A          318 LEAYWKATHPPSSNLP  333 (337)
T ss_dssp             HHHHHHHHSCCC----
T ss_pred             HHHHHhccCCCCCCCC
Confidence            9999999999988876

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=100.00  E-value=1.7e-53  Score=429.51  Aligned_cols=240  Identities=19%  Similarity=0.292  Sum_probs=182.3

Q ss_pred             CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCC---ceeeecChhHHHHHHHHhhhcc
Q psy6613          45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGS---ECGFIPSPVKLENLRLQQTQAR  121 (510)
Q Consensus        45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~---~~GlIPS~~~~Errr~~~~~kk  121 (510)
                      ..+|||||||||+|..|+.+||+  ||+|++||||||++++|++||||+++++++   .+|||||+.++|++...+....
T Consensus         3 ~~s~yvRa~fdY~~~~D~~~P~~--gL~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~~~~e~~~~~~~~~~   80 (292)
T 3tvt_A            3 KRSLYVRALFDYDPNRDDGLPSR--GLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKRRWERKMRARDRSV   80 (292)
T ss_dssp             --CCEEEECSCBCC-----------CCCBCTTCEEEEEECCSSSEEEECCCCC--------EEECHHHHHHHHHC-----
T ss_pred             CceEEEEEeccCCCCCCCCCCCC--cCCcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeChHHHHHHHHHhhccc
Confidence            35899999999999999999998  799999999999999999999999986554   5899999999998854322110


Q ss_pred             C--C--CcccccCCCCCCCCCCCCCCCCCCCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------
Q psy6613         122 N--P--KLYSSKTSSTSNLGALSSDAPSPGMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------  183 (510)
Q Consensus       122 ~--~--~l~~sk~~s~~~~~~~~~d~Ps~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------  183 (510)
                      +  .  ..|+..          ....|+++|||  +||   ||+||+++|++ +|+.|.++||||||+|           
T Consensus        81 ~~~~~~~~YE~V----------~~~~~~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~  147 (292)
T 3tvt_A           81 KSEENVLSYEAV----------QRLSINYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYH  147 (292)
T ss_dssp             -----CCCEEEE----------EEEECSSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBE
T ss_pred             cccccccchheE----------EeccCCCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCcccc
Confidence            0  0  001110          01126778876  888   49999999999 9999999999999988           


Q ss_pred             -------hhhhhc----------------ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHH
Q psy6613         184 -------VLTEVQ----------------TEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQ  239 (510)
Q Consensus       184 -------Fe~~I~----------------TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~  239 (510)
                             |++++.                |++++|++++++|++||||||++|  ++.++. .++|++|||+|||+++|+
T Consensus       148 Fv~s~e~fe~~i~~~~flE~a~~~gn~YGT~~~~V~~~~~~gk~viLdid~qg--~~~lk~~~~~pi~IFI~PpS~e~L~  225 (292)
T 3tvt_A          148 FVSSREQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNA--IKRLQVAQLYPVAVFIKPKSVDSVM  225 (292)
T ss_dssp             ECSCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHHTCEEEECCCTHH--HHHHHHTTCCCEEEEECCSCHHHHH
T ss_pred             ccCCHHHHHHHHhcCceEEEEEEccceeEEehHHHHHHHHcCCcEEEeccchh--hhhcccccccceEEEEECCCHHHHH
Confidence                   444432                999999999999999999999999  777776 899999999999999999


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEEEeCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy6613         240 RLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAPPQP  307 (510)
Q Consensus       240 ~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~VIvNDdLd~A~~eL~~ileai~~a~h~p~~~p~~  307 (510)
                      +|+++|++++.+.+..|+   .++++.++|+||+||+||||++||++|++   .|.....+++|+|+.
T Consensus       226 ~r~~~r~~e~~~~~~~r~---~k~e~e~~~~fD~vIvNddle~a~~~l~~---iI~~e~~~~~WVP~~  287 (292)
T 3tvt_A          226 EMNRRMTEEQAKKTYERA---IKMEQEFGEYFTGVVQGDTIEEIYSKVKS---MIWSQSGPTIWVPSK  287 (292)
T ss_dssp             HTCTTSCTTHHHHHHHHH---HHHHHHHTTTCSEEECCSSHHHHHHHHHH---HHHHHTCSEEEEEC-
T ss_pred             HHHhCCCchhHHHHHHHH---HHHHHhhhhhCCEEEECcCHHHHHHHHHH---HHHHhhCCCeEecCc
Confidence            999999887665555444   44566667999999999999999999993   445568999999985

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=100.00  E-value=9e-48  Score=393.83  Aligned_cols=169  Identities=69%  Similarity=0.988  Sum_probs=109.7

Q ss_pred             CCCC-CCCChhHhHHHHHHHHHHHHHHHHHHhccC-----------------------------------------CCCC
Q psy6613         338 SQPS-SDLSLDEEKETLRREKERQALSQLEKARVT-----------------------------------------DDNE  375 (510)
Q Consensus       338 s~ps-~~~s~~~~~~~~~~~~e~~a~~~l~~a~~~-----------------------------------------~~~~  375 (510)
                      +||| ||+|+|||+|++|||+|+||+.|||+|+++                                         |++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~k~~~~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~W   80 (337)
T 4dey_A            1 SRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDW   80 (337)
T ss_dssp             ----------CTTGGGHHHHHHHHHHHHHHHTSSSCCCEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSE
T ss_pred             CCCCccccchhhHHHHHHHHHHHHHHHhhhhccCCCccEEEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCCe
Confidence            5899 999999999999999999999999999995                                         2357


Q ss_pred             CCccccC--C-CCccCCC-------------------ChhhhhhhcccccCCCCCccccCCCcceEEeCCCCCCchhHHH
Q psy6613         376 SIGNSRA--G-KNTLTTP-------------------TTKEKKKIFFKKQETTTPYDVVPSMRPVVLVGPSLKGYEVTDM  433 (510)
Q Consensus       376 ~~~~~~~--~-~~~~~~~-------------------~~~~~~~~~~~~~~~~~~y~~~p~~rp~~~~gp~~~~~~~~~~  433 (510)
                      |.|+...  | .+.+++|                   +++.|+|+||+|+++++||+|||+|||||||||+++|||||||
T Consensus        81 Wqar~~~~~g~~GlIPS~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~Ye~vp~~RPvvlvGP~~~g~~~td~  160 (337)
T 4dey_A           81 WIGRLVKEGCEIGFIPSPVKLENMRLQHEQRAKEFKLHSKEKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDM  160 (337)
T ss_dssp             EEEEESSTTCCCEEEECHHHHHHHHHHHHHHCC-------------------CCSEEEECSSCCEEEECSSCTTSHHHHH
T ss_pred             EEEEECCCCCCccEecCHHHHHHHHHhhhhccccCCCCcccccccccccCCCCCCccccCCCCceEEECCccccchhHHH
Confidence            8775421  1 1111111                   2456788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCcEEEEEEecchhhHHhhccCCccccccccccCCCcchhHHHHHHHHHHHHHhhcccccc
Q psy6613         434 MQKALFDFLKHRFEGRIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQVYY  507 (510)
Q Consensus       434 m~~al~~~l~~~f~~~i~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~i~~~~~~~~l~~  507 (510)
                      |||||||||+|||+|+|.||||++||++|||+.++|+.|+++||+++.+++ +.||++|||||++++++-+.|+
T Consensus       161 m~~~l~d~l~~~F~~~i~~tR~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~-~~ev~seVe~i~~v~~~Gk~vI  233 (337)
T 4dey_A          161 MQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLVV  233 (337)
T ss_dssp             HHHHHHHHHHHHTTTSEEEEEECSCGGGC-------------------CCC-HHHHHHHHHHHHHHTTTCCEEE
T ss_pred             HHHHHHHhhHHhcCCccceEeecchhhhcchhhhhcccchhhhcccccccc-hHHHHhHHHHHHHHHhCCCEEE
Confidence            999999999999999999999999999999999999999999999998877 8999999999999998766553

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=100.00  E-value=1.9e-45  Score=370.57  Aligned_cols=241  Identities=22%  Similarity=0.309  Sum_probs=194.8

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCC---CceeeecChhHHHHHHHHhhhccCC
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEG---SECGFIPSPVKLENLRLQQTQARNP  123 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~---~~~GlIPS~~~~Errr~~~~~kk~~  123 (510)
                      +|||||+|||++..|+.+|  +.+|+|++||||+|+++.|++||+|++++++   +..|+|||+.++|++...+..   .
T Consensus         1 s~~vrAlydy~~~~~~~~p--~~eLsf~~GDil~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~e~~~~~~~~---~   75 (295)
T 1kjw_A            1 GFYIRALFDYDKTKDCGFL--SQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSRLK---A   75 (295)
T ss_dssp             CEEEEESSCBCHHHHHCCC--SSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHHHHHTSCC----
T ss_pred             CEEEEEeeccCCCCCCCCC--CcCCcCCCCCEEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHHHHHHHhhhc---c
Confidence            4899999999999998888  6789999999999999999999999998654   378999999999987654221   1


Q ss_pred             CcccccCCCCCCCCCCCCCC----------CCCCCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-------
Q psy6613         124 KLYSSKTSSTSNLGALSSDA----------PSPGMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-------  183 (510)
Q Consensus       124 ~l~~sk~~s~~~~~~~~~d~----------Ps~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-------  183 (510)
                      ..+.+++    +.......+          |.++|||  +||   ||+||+++|++ +|+.|.++||||||+|       
T Consensus        76 ~~~~~~~----~~~~~~~~~~~Ye~V~~~~~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G  148 (295)
T 1kjw_A           76 KDWGSSS----GSQGREDSVLSYETVTQMEVHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDG  148 (295)
T ss_dssp             --CCSCC----SSCCCCCCCCCEEEEEEEECCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBT
T ss_pred             cccCccc----ccccccCCCCCcceeeeecCCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccC
Confidence            1122211    111111111          4567776  898   79999999999 9989999999999987       


Q ss_pred             -----------hhhhhc----------------ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCH
Q psy6613         184 -----------VLTEVQ----------------TEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSP  235 (510)
Q Consensus       184 -----------Fe~~I~----------------TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~  235 (510)
                                 |++++.                |+++.|++++++|++||||+|++|  ++.++. .+.|++|||+|||+
T Consensus       149 ~dY~Fv~s~eef~~~i~~g~flE~~~~~g~~YGt~~~~V~~~~~~G~~vildid~~g--~~~l~~~~~~pi~IfI~pps~  226 (295)
T 1kjw_A          149 RDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANA--VRRLQAAHLHPIAIFIRPRSL  226 (295)
T ss_dssp             TTBEECSCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEECCCTTH--HHHHHHTTCCCEEEEECCSSH
T ss_pred             ceeEecCCHHHHHHHHHCCCcEEEEEEcCcEeeeeHHHHHHHHhcCCeEEEEeCHHH--HHHHHhcccCCeEEEEECCCH
Confidence                       444432                999999999999999999999999  777765 78899999999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEEEeCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy6613         236 KVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAPPQP  307 (510)
Q Consensus       236 e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~VIvNDdLd~A~~eL~~ileai~~a~h~p~~~p~~  307 (510)
                      ++|++ |++||++  +++.+||+.+.+++..+.+.||+||+|||+++|+++|.++|   ....++|+|+|.+
T Consensus       227 ~~L~~-L~~R~t~--~~i~~rl~~a~~~e~~~~~~fd~vivNd~le~a~~~l~~ii---~~~~~~~~Wvp~~  292 (295)
T 1kjw_A          227 ENVLE-INKRITE--EQARKAFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVI---EDLSGPYIWVPAR  292 (295)
T ss_dssp             HHHHH-HCTTSCH--HHHHHHHHHHHHHHHHHGGGCSEEECCSSHHHHHHHHHHHH---HHHSCSEEEEECS
T ss_pred             HHHHH-HHhcCCH--HHHHHHHHHHHHHHHhccccCeEEEECcCHHHHHHHHHHHH---HhccCCCEEeeCC
Confidence            99999 8888865  56778886665566666789999999999999999999554   4568999999985

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=100.00  E-value=2.1e-45  Score=391.50  Aligned_cols=275  Identities=15%  Similarity=0.175  Sum_probs=206.6

Q ss_pred             CCCccchhhhHHHhHHHHHHHHHHHhhh--c--------------------cCCCeeEEEEeeccCCCCCCCCCCCCccc
Q psy6613          14 SSDLSLDEEKETLRREKERQALSQLEKA--R--------------------AKNVAFAVRTNVKYDGSIDDDSPVHGYAV   71 (510)
Q Consensus        14 ~~d~~~~~~~~~~~~~~~~~a~~~L~~a--~--------------------~k~~~~~VRAlfdY~~~~D~~iPc~e~~L   71 (510)
                      .+|++++-|+..+++.+..++...|...  .                    .....|||||+|||++..+       .+|
T Consensus        43 ~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g~~~~~~~~~~~g~s~yVralfdy~~~~~-------~~L  115 (468)
T 3shw_A           43 EGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESP-------YGL  115 (468)
T ss_dssp             TTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHHHHHHHHHHTCCCCEEEEECSCBCCSST-------TBC
T ss_pred             CCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCccchhhhccccccccccccccCcCCCCC-------CCc
Confidence            3899999999998876666666666551  1                    2356899999999999763       479


Q ss_pred             cccCCceEEEEee---cCCCceEEEEccCCC---ceeeecChhHHHHHHHHhhhc-c-----CCCc------ccccCC--
Q psy6613          72 SFDIHEFLHIKEK---YDSNWWIGRLVKEGS---ECGFIPSPVKLENLRLQQTQA-R-----NPKL------YSSKTS--  131 (510)
Q Consensus        72 sF~~GDiL~V~~~---~d~~WWqar~v~~~~---~~GlIPS~~~~Errr~~~~~k-k-----~~~l------~~sk~~--  131 (510)
                      +|++||||||+++   .|.+||+|++++.++   +.|+|||+.++|++...+... +     +..+      ..+++.  
T Consensus       116 sF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e~~~~~~~~~~~~~~~~~~~f~~~~~~r~~kk~~~  195 (468)
T 3shw_A          116 SFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGGDRADFWRFRGLRSSKRNLR  195 (468)
T ss_dssp             CBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHHHHHHHHHC--------------------------
T ss_pred             eEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHHHHHHHhhhhhccccccccchhhhccccccccccc
Confidence            9999999999999   678999999987755   689999999999985432210 0     0000      001100  


Q ss_pred             -C--CCCCCCCCCCC----------CCCCCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchhhhhhhc------
Q psy6613         132 -S--TSNLGALSSDA----------PSPGMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSSVLTEVQ------  189 (510)
Q Consensus       132 -s--~~~~~~~~~d~----------Ps~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~pFe~~I~------  189 (510)
                       +  ..+..++..++          |+++|||  +||||+|   |+++|++ +|+.|..   +||| |...++.      
T Consensus       196 ~~~~~~~~~~~~~~~~~YEeV~~~~~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s---~~TR-pR~gE~dG~~Y~F  268 (468)
T 3shw_A          196 KSREDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADV---AREKLAREEPDIYQI---AKSE-PRDAGTDQRSSGI  268 (468)
T ss_dssp             -----------CCCCCSEEEEEEECCSSCCCEEEESTTHHH---HHHHHHHHCTTTEEE---CCCB-C----------CB
T ss_pred             cchhhcccccccccCCCcceeEcccCCCCCEEEEECCCHHH---HHHHHHHhCCCceee---ecCC-CCCcccccccCCc
Confidence             0  01111222222          5678876  9999999   9999999 9998876   3689 6344332      


Q ss_pred             ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCC
Q psy6613         190 TEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQ  268 (510)
Q Consensus       190 TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~  268 (510)
                      |++++|++++++||+||||||+||  ++.++. .++|++|||+|||+++|+++++.+++++++.+.++++++.+||+.|+
T Consensus       269 Ts~~~V~~vl~~Gk~~iLdId~qg--~~~l~~~~~~p~~IFI~PPS~e~L~~~~~rl~~~see~~~r~~~~a~~~e~~~~  346 (468)
T 3shw_A          269 IRLHTIKQIIDQDKHALLDVTPNA--VDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNH  346 (468)
T ss_dssp             CCHHHHHHHHTTTCEEEECCCHHH--HHHHHHTTCCCEEEEEECSCHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHHG
T ss_pred             ccHHHHHHHHHCCCeEEEEeCHHH--HHHHHhcCCCCEEEEEeCcCHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999  888887 88999999999999999987666666666655555588888998889


Q ss_pred             CCccEEEeCCCH-HHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy6613         269 EMFDVILDENQL-EDACEHIAEYLEAYWRATHPPAAPPQP  307 (510)
Q Consensus       269 ~~FD~VIvNDdL-d~A~~eL~~ileai~~a~h~p~~~p~~  307 (510)
                      |+|||||+|||+ +.||++|+++   |.....+|+|+|..
T Consensus       347 ~~fD~vIvNddl~d~a~~~L~~i---i~~~~~~~~WvP~~  383 (468)
T 3shw_A          347 HLFTTTINLNSMNDGWYGALKEA---IQQQQNQLVWVSEG  383 (468)
T ss_dssp             GGCSEEEECBTTBCHHHHHHHHH---HHHHHTSCEEEEC-
T ss_pred             ccCCEEEECCCcHHHHHHHHHHH---HHHhcCCCEEeCCc
Confidence            999999999999 5999999944   44567899999993

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=100.00  E-value=7.3e-44  Score=361.93  Aligned_cols=244  Identities=16%  Similarity=0.220  Sum_probs=179.0

Q ss_pred             CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCC---------ceEEEEccCCC---ceeeecChhHHHH
Q psy6613          45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSN---------WWIGRLVKEGS---ECGFIPSPVKLEN  112 (510)
Q Consensus        45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~---------WWqar~v~~~~---~~GlIPS~~~~Er  112 (510)
                      +.+|||||||||++..+       .+|+|++||||||+++.+++         ||+|++++.++   ..|+|||+.++|+
T Consensus         2 gdsfyVRalfdy~~~~~-------~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~aeq   74 (308)
T 3kfv_A            2 GDSFYIRTHFELEPSPP-------SGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAEQ   74 (308)
T ss_dssp             -CCEEEEECSCBCCCSS-------SBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHHHH
T ss_pred             CccEEEEEecCcCCCCc-------ccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHHHH
Confidence            46899999999999754       47999999999999998776         99999987654   7899999999998


Q ss_pred             HHHHhh-hcc-------------CCCccc-------ccCCCCCCCCCCC------CCC----------CCCCCeE--Eec
Q psy6613         113 LRLQQT-QAR-------------NPKLYS-------SKTSSTSNLGALS------SDA----------PSPGMII--ITR  153 (510)
Q Consensus       113 rr~~~~-~kk-------------~~~l~~-------sk~~s~~~~~~~~------~d~----------Ps~~RpI--~GP  153 (510)
                      +...+. +..             +..++.       .|... .+...+.      .++          |++.|||  +||
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~r~~f~~~~~~r~~~k~~~-~~~~~d~~~~~~~~~~~~YE~V~~~~~~~~RPvVl~GP  153 (308)
T 3kfv_A           75 LASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGAKKTT-QRSREDLSALTRQGRYPPYERVVLREASFKRPVVILGP  153 (308)
T ss_dssp             HHHHHHHHCC------------------------------------CCCHHHHHHHTCCSEEEEEEEECSSCCCEEEEST
T ss_pred             HHHHHHhhhhcccccccccccccccchhhhccccccccccc-cccccccccccccCCCcCchheeccccCCCCeEEEeCc
Confidence            833211 100             001111       11100 0000110      011          5677877  899


Q ss_pred             CcCChHHHHHHHhc-CCCCceeeecCCCchhhhhhhcccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEe
Q psy6613         154 VTADISLAKRSLMS-NPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLK  231 (510)
Q Consensus       154 sGvGKsTL~~rLL~-~P~~F~~sVshTTR~pFe~~I~TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIk  231 (510)
                         +|++|+++|++ +|++|+++||. +|.- ...-.+++++|++++++|++||||||+||  ++.++. .++|++|||+
T Consensus       154 ---~k~~l~~~L~~~~P~~F~~~v~~-~r~i-~~~~fis~~~V~~vl~~Gk~~ILDId~QG--a~~lk~~~~~pi~IFI~  226 (308)
T 3kfv_A          154 ---VADIAMQKLTAEMPDQFEIAETV-SRTD-SPSKIIKLDTVRVIAEKDKHALLDVTPSA--IERLNYVQYYPIVVFFI  226 (308)
T ss_dssp             ---THHHHHHHHHHHCTTTEEECCCC----------CCCHHHHHHHHHTTCEEEECCCHHH--HHHHHHTTCCCEEEEEE
T ss_pred             ---cHHHHHHHHHHhCcccccccccc-cccc-cCCCeecHHHHHHHHHCCCcEEEEECHHH--HHHHHhcCCCCEEEEEe
Confidence               69999999999 99999999994 4431 11112799999999999999999999999  888876 8899999999


Q ss_pred             CCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEEE-eCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy6613         232 ISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVIL-DENQLEDACEHIAEYLEAYWRATHPPAAPPQP  307 (510)
Q Consensus       232 PPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~VI-vNDdLd~A~~eL~~ileai~~a~h~p~~~p~~  307 (510)
                      |||+++|++|+..+++++++ +.+|| +++.+||..|+++||||| +|||+|.||++|+++|   ...++.|+|+|..
T Consensus       227 PPS~eeL~~rr~R~~~esee-~~~r~~~aa~eiE~~~~~~FD~vI~VNDdle~A~~~L~~iI---~~~~~epqWvp~~  300 (308)
T 3kfv_A          227 PESRPALKALRQWLAPASRR-STRRLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAII---REQQTRPIWTAED  300 (308)
T ss_dssp             ESCHHHHHHHHHHHSTTCCC-CHHHHHHHHHHHHHHHGGGCSEEEEECSSSTHHHHHHHHHH---HHHTTSEEEEEC-
T ss_pred             CCCHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHHHhhhccCcEEEEcCCCHHHHHHHHHHHH---HHhcCCCeEeehh
Confidence            99999999975444555555 44566 878889988889999999 9999999999999444   5579999999984

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=100.00  E-value=1.2e-44  Score=377.66  Aligned_cols=274  Identities=15%  Similarity=0.186  Sum_probs=204.9

Q ss_pred             CCCccchhhhHHHhHHHHHHHHHHHhh--hc--------------------cCCCeeEEEEeeccCCCCCCCCCCCCccc
Q psy6613          14 SSDLSLDEEKETLRREKERQALSQLEK--AR--------------------AKNVAFAVRTNVKYDGSIDDDSPVHGYAV   71 (510)
Q Consensus        14 ~~d~~~~~~~~~~~~~~~~~a~~~L~~--a~--------------------~k~~~~~VRAlfdY~~~~D~~iPc~e~~L   71 (510)
                      .+|++++-|+..++..+..++...|..  +.                    .....|||||+|||++.++       .+|
T Consensus        51 ~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~~~~~~~~~~~~~~~~~vral~dy~~~~~-------~~L  123 (391)
T 3tsz_A           51 EGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESP-------YGL  123 (391)
T ss_dssp             TTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHHHHGGGTSSCCSCCEEEEECSCBCCSST-------TBC
T ss_pred             CCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCCcccccccccccccccccccccccCCCCC-------Ccc
Confidence            389999999999987666777777764  11                    1346899999999999644       379


Q ss_pred             cccCCceEEEEee---cCCCceEEEEccCCC---ceeeecChhHHHHHHHHhhhc-c-----CCC------cccccCC--
Q psy6613          72 SFDIHEFLHIKEK---YDSNWWIGRLVKEGS---ECGFIPSPVKLENLRLQQTQA-R-----NPK------LYSSKTS--  131 (510)
Q Consensus        72 sF~~GDiL~V~~~---~d~~WWqar~v~~~~---~~GlIPS~~~~Errr~~~~~k-k-----~~~------l~~sk~~--  131 (510)
                      +|++||||+|+++   .|.+||+|++++.++   +.|+|||+.++|++...+... +     +..      +..++..  
T Consensus       124 sf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~  203 (391)
T 3tsz_A          124 SFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGGDRADFWRFRGLRSSKRNLR  203 (391)
T ss_dssp             CBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHHHHHSSCCC--------------------------
T ss_pred             eEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence            9999999999999   688999999987643   589999999999985432110 0     000      0001100  


Q ss_pred             -CCC--CCCCCCCCC----------CCCCCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchhhhhhhc------
Q psy6613         132 -STS--NLGALSSDA----------PSPGMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSSVLTEVQ------  189 (510)
Q Consensus       132 -s~~--~~~~~~~d~----------Ps~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~pFe~~I~------  189 (510)
                       +..  +..++..++          |+++|||  +||||   +||+++|++ +|+.|..    |||+|...++.      
T Consensus       204 k~~~~~~~~~~~~~~~~YE~V~~~~~~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~----~tr~pR~gE~dG~~Y~F  276 (391)
T 3tsz_A          204 KSREDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIA---DVAREKLAREEPDIYQI----AKSEPRDAGTDQRSSGI  276 (391)
T ss_dssp             -------------CCCSEEEEEEEECSSCCCEEEESTTH---HHHHHHHHHHCTTTEEE----CCCCCCCSSSCCC--CC
T ss_pred             ccccccccccccccCCCcceEECcCCCCCCEEEEECCCH---HHHHHHHHhhCcccccc----ccCCCCCcccCCccCCc
Confidence             000  111111222          5677876  99998   899999999 9998875    57777333322      


Q ss_pred             ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCC
Q psy6613         190 TEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQ  268 (510)
Q Consensus       190 TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~  268 (510)
                      +++++|++++++|++||||||+||  ++.++. .++|++|||+|||+++|++|++.+++++++.+.++++++.+||+.|+
T Consensus       277 v~~~~V~~~~~~Gk~~iLdId~qg--~~~l~~~~~~p~~IFI~PPS~~~L~~~~~r~~~~s~e~~~~~~~~a~~~e~~~~  354 (391)
T 3tsz_A          277 IRLHTIKQIIDQDKHALLDVTPNA--VDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNH  354 (391)
T ss_dssp             CCHHHHHHHHTTTCEEEECCCHHH--HHHHHHTTCCCEEEEEECCCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHG
T ss_pred             CcHHHHHHHHHcCCEEEEEeCHHH--HHHHHhCCCCCEEEEEeCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            899999999999999999999999  888887 88999999999999999997554455555555545588889998888


Q ss_pred             CCccEEEeCCCHH-HHHHHHHHHHHHHHHhcCCCCCCCC
Q psy6613         269 EMFDVILDENQLE-DACEHIAEYLEAYWRATHPPAAPPQ  306 (510)
Q Consensus       269 ~~FD~VIvNDdLd-~A~~eL~~ileai~~a~h~p~~~p~  306 (510)
                      |+|||||+|||++ .||++|+++|   ...+++|+|+|.
T Consensus       355 ~~fd~vivNd~l~~~a~~~l~~ii---~~~~~~~~Wvp~  390 (391)
T 3tsz_A          355 HLFTTTINLNSMNDGWYGALKEAI---QQQQNQLVWVSE  390 (391)
T ss_dssp             GGCSEEEECCTTCCHHHHHHHHHH---HHHHHSEEEEEC
T ss_pred             ccCcEEEECCCcHHHHHHHHHHHH---HHhcCCCeeccC
Confidence            9999999999998 7999999444   556789999984

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=100.00  E-value=2.2e-43  Score=392.33  Aligned_cols=277  Identities=22%  Similarity=0.294  Sum_probs=217.2

Q ss_pred             CCccchhhhHHHhHHHHHHHHHHHhhhc------------------------------------------cCCCeeEEEE
Q psy6613          15 SDLSLDEEKETLRREKERQALSQLEKAR------------------------------------------AKNVAFAVRT   52 (510)
Q Consensus        15 ~d~~~~~~~~~~~~~~~~~a~~~L~~a~------------------------------------------~k~~~~~VRA   52 (510)
                      +|++++-|+..+++.+-.++...|..+.                                          .....|||||
T Consensus       353 GD~Il~VNg~~v~~~~~~e~~~~l~~~~~~v~L~v~r~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~vrA  432 (721)
T 2xkx_A          353 GDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLMNSSLGSGTASLRSNPKRGFYIRA  432 (721)
T ss_pred             CCEEEEECCEECCCCCHHHHHHHHHhcCCeEEEEEEeCchhhhhhhhhhhhhhhhcccccccCCccccccccccceeEEE
Confidence            7999999998887655455555554321                                          0125699999


Q ss_pred             eeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCC---CceeeecChhHHHHHHHHhhhccCCCccccc
Q psy6613          53 NVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEG---SECGFIPSPVKLENLRLQQTQARNPKLYSSK  129 (510)
Q Consensus        53 lfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~---~~~GlIPS~~~~Errr~~~~~kk~~~l~~sk  129 (510)
                      +|||++..|+++|+  .+|+|++||||+|+++.|++||+|++++.+   +..|+|||+.++|++...+.   +...+.++
T Consensus       433 l~dy~~~~d~~~p~--~~LsF~~GDil~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~e~~~~~~~---~~~~~~~~  507 (721)
T 2xkx_A          433 LFDYDKTKDCGFLS--QALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSRL---KAKDWGSS  507 (721)
T ss_pred             eeccCcCCCCCCcc--ccccccCCCEEEEeecCCCCeEEEEECCCCCccCccceeecHHHHHHHHhhhc---ccccccCc
Confidence            99999999999994  579999999999999999999999998654   36799999999998744321   11112222


Q ss_pred             CCCCCCCCCC--CCC----CCCCCCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------
Q psy6613         130 TSSTSNLGAL--SSD----APSPGMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------  183 (510)
Q Consensus       130 ~~s~~~~~~~--~~d----~Ps~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------  183 (510)
                      +.........  ++.    .|.++|+|  +||+   |+||+++|++ +|+.|.++|+||||+|                 
T Consensus       508 ~~~~~~~~~~~~Ye~V~~~~~~~~r~vvl~GP~---K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~  584 (721)
T 2xkx_A          508 SGSQGREDSVLSYETVTQMEVHYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSRE  584 (721)
T ss_pred             chhhcccccCCCceeeecccCCCCCEEEEECCC---HHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHH
Confidence            1110000000  111    14577877  8994   9999999999 8989999999999987                 


Q ss_pred             -hhhhhc----------------ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhc
Q psy6613         184 -VLTEVQ----------------TEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSR  245 (510)
Q Consensus       184 -Fe~~I~----------------TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~R  245 (510)
                       |+++++                |++++|++++++|++||||+|++|  ++.++. .++|++|||+|||+++|++ |+.|
T Consensus       585 ~f~~~i~~~~flE~~~~~g~~YGt~~~~v~~~~~~g~~~ildi~~~~--~~~l~~~~~~p~~ifi~pps~~~L~~-l~~R  661 (721)
T 2xkx_A          585 KMEKDIRAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANA--VRRLQAAHLHPIAIFIRPRSLENVLE-INKR  661 (721)
T ss_pred             HHHHHHhcCCceEEEEECCccceeeHHHHHHHHHCCCcEEEeCCHHH--HHHHHhcccCCEEEEEeCCcHHHHHH-Hhcc
Confidence             344432                999999999999999999999998  777776 7889999999999999999 8889


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCCCCccEEEeCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy6613         246 GKSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAPPQP  307 (510)
Q Consensus       246 gt~~~e~i~kRL~aa~eLEq~~~~~FD~VIvNDdLd~A~~eL~~ileai~~a~h~p~~~p~~  307 (510)
                      +++  +++.+||+++.++|..+.++||+||+||||++||++|.++|   ....++++|+|..
T Consensus       662 ~t~--~~~~~rl~~a~~~e~~~~~~fd~vi~Nd~l~~a~~~l~~~i---~~~~~~~~Wvp~~  718 (721)
T 2xkx_A          662 ITE--EQARKAFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVI---EDLSGPYIWVPAR  718 (721)
T ss_pred             CCH--HHHHHHHHHHHHHHHhccccCcEEEECcCHHHHHHHHHHHH---HhccCCcEEeecc
Confidence            865  56788887777778888899999999999999999999554   4578999999985

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=100.00  E-value=3.2e-33  Score=264.86  Aligned_cols=139  Identities=16%  Similarity=0.289  Sum_probs=128.2

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc----------------ccHHHHH
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ----------------TEIERVY  196 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~----------------TslesI~  196 (510)
                      +|||||||+||+++|++ +|+.|.++||||||+|                 |++++.                |+++.|.
T Consensus         7 ~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~~~v~   86 (186)
T 1ex7_A            7 SGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVK   86 (186)
T ss_dssp             ECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeecceee
Confidence            99999999999999999 9999999999999998                 555442                9999999


Q ss_pred             HHHHcCCeEEEEeccCCchhHhhhc--CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccE
Q psy6613         197 ELASTLQLVVLDCDTINHPSQLAKT--NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDV  273 (510)
Q Consensus       197 ~vi~sGKi~ILDID~qg~~lq~lks--~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~  273 (510)
                      +++++|++||||+|++|  ++.++.  .+.+++|||.|||+++|++||+.||+++.+.+.+|| .+..+|+..+.+.||+
T Consensus        87 ~~l~~g~~vil~id~~g--~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl~~a~~e~~~~~~~~fD~  164 (186)
T 1ex7_A           87 QVSKSGKTCILDIDMQG--VKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDK  164 (186)
T ss_dssp             HHHHHTSEEEEECCHHH--HHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTTTCSSE
T ss_pred             ehhhCCCEEEecCCHHH--HHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccCCcE
Confidence            99999999999999999  777776  568999999999999999999999999999999999 7778898877789999


Q ss_pred             EEeCCCHHHHHHHHHHHH
Q psy6613         274 ILDENQLEDACEHIAEYL  291 (510)
Q Consensus       274 VIvNDdLd~A~~eL~~il  291 (510)
                      ||+||||+.|+++|.+||
T Consensus       165 vIvNddle~a~~~l~~iI  182 (186)
T 1ex7_A          165 VIVNDDLDKAYKELKDFI  182 (186)
T ss_dssp             EEECSSHHHHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHH
Confidence            999999999999999555

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=99.95  E-value=1.4e-27  Score=228.47  Aligned_cols=145  Identities=21%  Similarity=0.287  Sum_probs=116.9

Q ss_pred             CCCCCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc--------------
Q psy6613         144 PSPGMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ--------------  189 (510)
Q Consensus       144 Ps~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~--------------  189 (510)
                      |..+++|  +||||+|||||++.|+. +|+.|.++++||||+|                 |.+++.              
T Consensus        16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~n~   95 (197)
T 3ney_A           16 FQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNM   95 (197)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhcee
Confidence            4467776  99999999999999999 8888999999999988                 333321              


Q ss_pred             --ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhc
Q psy6613         190 --TEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQC  266 (510)
Q Consensus       190 --TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~  266 (510)
                        |+.+.|++++++|++||||+|++|  ++.++. .++|++|||.|||++        ++++..+.+.+|+   ++++..
T Consensus        96 YGt~~~~v~~~l~~G~~vildid~qg--~~~~~~~~~~~~~Ifi~Pps~~--------~~~e~~~~i~~r~---~~~~~~  162 (197)
T 3ney_A           96 FGTKFETVHQIHKQNKIAILDIEPQT--LKIVRTAELSPFIVFIAPTDQG--------TQTEALQQLQKDS---EAIRSQ  162 (197)
T ss_dssp             EEEEHHHHHHHHHTTCEEEEECCGGG--HHHHCSTTTCEEEEEEEECCBS--------SCCHHHHHHHHHH---HHHHHH
T ss_pred             cccchhhHHHHHhcCCeEEEEECHHH--HHHHHhcCCCceEEEEeCCCcc--------ccchHHHHHHHHH---HHHHHh
Confidence              889999999999999999999999  888876 689999999999974        3443334444444   344444


Q ss_pred             CCCCccEEEeCCCHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy6613         267 PQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAP  304 (510)
Q Consensus       267 ~~~~FD~VIvNDdLd~A~~eL~~ileai~~a~h~p~~~  304 (510)
                      +.+.|||||+|||||.|+++|..   .+..+++.|+|+
T Consensus       163 ~~~~fd~vivNd~l~~a~~~l~~---ii~~~~~~pqWv  197 (197)
T 3ney_A          163 YAHYFDLSLVNNGVDETLKKLQE---AFDQACSSPQWV  197 (197)
T ss_dssp             HGGGCSEEEEESCHHHHHHHHHH---HHHHCCCCCC--
T ss_pred             hccCCCEEEECCCHHHHHHHHHH---HHHHccCCCCCC
Confidence            56899999999999999999994   446789999996

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=99.89  E-value=2.9e-23  Score=196.01  Aligned_cols=144  Identities=13%  Similarity=0.174  Sum_probs=117.0

Q ss_pred             CCCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc----------------
Q psy6613         146 PGMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ----------------  189 (510)
Q Consensus       146 ~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~----------------  189 (510)
                      .+++|  +||+|+|||||.+.|.. +|..|..+++||||+|                 |..++.                
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~yg   86 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYG   86 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccCC
Confidence            35555  99999999999999998 7767999999999987                 222211                


Q ss_pred             ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcC
Q psy6613         190 TEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCP  267 (510)
Q Consensus       190 TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~  267 (510)
                      |+.+.|.++++.|++||||+|++|  ...++. ...+++|||.|||.++|++|+..||+++.+.+.+|| .+..+++.. 
T Consensus        87 ~~~~~i~~~l~~g~~vild~~~~g--~~~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~~e~~~~-  163 (208)
T 3tau_A           87 TPLEYVEEKLAAGVDIFLEIEVQG--AMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMM-  163 (208)
T ss_dssp             EEHHHHHHHHHTTCCEEEECCHHH--HHHHHHHCTTSEEEEEECTTTTTSSCC-------CCHHHHHHHHHHHHHHHHG-
T ss_pred             CcHHHHHHHHHcCCeEEEEeeHHH--HHHHHHhCCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh-
Confidence            788999999999999999999999  666665 778999999999999999999999998889999999 555566554 


Q ss_pred             CCCccEEEeCCCHHHHHHHHHHHHHH
Q psy6613         268 QEMFDVILDENQLEDACEHIAEYLEA  293 (510)
Q Consensus       268 ~~~FD~VIvNDdLd~A~~eL~~ilea  293 (510)
                       +.||+||+||++++++.+|..+|.+
T Consensus       164 -~~~d~vivN~~~~~~~~~l~~~i~~  188 (208)
T 3tau_A          164 -ASYDYAVVNDVVANAVQKIKGIVET  188 (208)
T ss_dssp             -GGSSEEEECSSHHHHHHHHHHHHHH
T ss_pred             -ccCCEEEECcCHHHHHHHHHHHHHH
Confidence             7899999999999999999977754

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=99.88  E-value=3.3e-23  Score=191.20  Aligned_cols=139  Identities=14%  Similarity=0.283  Sum_probs=115.1

Q ss_pred             CCCCCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc--------------
Q psy6613         144 PSPGMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ--------------  189 (510)
Q Consensus       144 Ps~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~--------------  189 (510)
                      |..++++  +||||+|||||.+.|+. +|..|..+|+||||+|                 |...+.              
T Consensus         2 ~~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~   81 (180)
T 1kgd_A            2 SHMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAM   81 (180)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEEEEcCcc
Confidence            4556766  99999999999999998 7767889999999986                 222211              


Q ss_pred             --ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHh
Q psy6613         190 --TEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQ  265 (510)
Q Consensus       190 --TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq  265 (510)
                        ++.+.|.++++.|++||||+|++|  +..++. .+.+++|||.||++++|++|        ++.+ +|| .+..+++.
T Consensus        82 yg~~~~~i~~~l~~g~~vil~id~~g--~~~~~~~~~~~~~ifi~~p~~~~l~~R--------~~~i-~r~~~~~~~~~~  150 (180)
T 1kgd_A           82 YGTKLETIRKIHEQGLIAILDVEPQA--LKVLRTAEFAPFVVFIAAPTITPGLNE--------DESL-QRLQKESDILQR  150 (180)
T ss_dssp             EEEEHHHHHHHHHTTCEEEEECCGGG--HHHHSSTTTCEEEEEEECCSCCTTSCC--------SHHH-HHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHCCCeEEEEECHHH--HHHHHHhCCCcEEEEEECCCHHHHHhh--------HHHH-HHHHHHHHHHHH
Confidence              677889999999999999999999  777776 56789999999999998876        3455 788 76678865


Q ss_pred             cCCCCccEEEeCCCHHHHHHHHHHHHHH
Q psy6613         266 CPQEMFDVILDENQLEDACEHIAEYLEA  293 (510)
Q Consensus       266 ~~~~~FD~VIvNDdLd~A~~eL~~ilea  293 (510)
                      .+.+.||++|+||+++.|+++|.++|..
T Consensus       151 ~~~~~~d~~i~n~~~~~~~~~l~~~i~~  178 (180)
T 1kgd_A          151 TYAHYFDLTIINNEIDETIRHLEEAVEL  178 (180)
T ss_dssp             HHGGGCSEEEECSSHHHHHHHHHHHHHH
T ss_pred             hhhCCCcEEEECcCHHHHHHHHHHHHHH
Confidence            5668999999999999999999987764

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.85  E-value=5.1e-21  Score=184.41  Aligned_cols=143  Identities=17%  Similarity=0.224  Sum_probs=120.6

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-CCC-CceeeecCCCchh-----------------hhhhh---------------c-
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-NPS-KRAIMERSNSRSS-----------------VLTEV---------------Q-  189 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~P~-~F~~sVshTTR~p-----------------Fe~~I---------------~-  189 (510)
                      |+++  +||||+|||||.+.|+. .|. .+..+|++|||++                 |...+               + 
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~yg   95 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYG   95 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccCC
Confidence            4554  99999999999999998 663 6888999999976                 22111               0 


Q ss_pred             ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcC
Q psy6613         190 TEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCP  267 (510)
Q Consensus       190 TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~  267 (510)
                      |+.+.|.++++.|++||||+|+++  .+.++. ....++|||.||++++|++|+..||+++.+++.+|+ .+..+++.  
T Consensus        96 ~~~~~v~~~l~~G~illLDLD~~~--~~~i~~~l~~~~tI~i~th~~~~l~~Rl~~rG~~~~e~i~~rl~~a~~e~~~--  171 (219)
T 1s96_A           96 TSREAIEQVLATGVDVFLDIDWQG--AQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSH--  171 (219)
T ss_dssp             EEHHHHHHHHTTTCEEEEECCHHH--HHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHTT--
T ss_pred             CCHHHHHHHHhcCCeEEEEECHHH--HHHHHHHccCCEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh--
Confidence            778899999999999999999999  666665 346899999999999999999999999999999999 66667654  


Q ss_pred             CCCccEEEeCCCHHHHHHHHHHHHHH
Q psy6613         268 QEMFDVILDENQLEDACEHIAEYLEA  293 (510)
Q Consensus       268 ~~~FD~VIvNDdLd~A~~eL~~ilea  293 (510)
                      .+.||++|+|||+++|+.+|..+|.+
T Consensus       172 ~~~~d~~i~Nd~l~~a~~~l~~ii~~  197 (219)
T 1s96_A          172 YAEYDYLIVNDDFDTALTDLKTIIRA  197 (219)
T ss_dssp             GGGSSEEEECSSHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHHHH
Confidence            47899999999999999999977754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.84  E-value=1.5e-20  Score=176.16  Aligned_cols=146  Identities=12%  Similarity=0.148  Sum_probs=119.8

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc----------------c
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ----------------T  190 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~----------------T  190 (510)
                      +++|  +||||+||||+.+.|.+ .|..|.++++||||++                 |..++.                +
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYGT   91 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCeecC
Confidence            4444  99999999999999998 7655999999999987                 222110                6


Q ss_pred             cHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CC--CceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhc
Q psy6613         191 EIERVYELASTLQLVVLDCDTINHPSQLAKT-NL--SPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQC  266 (510)
Q Consensus       191 slesI~~vi~sGKi~ILDID~qg~~lq~lks-~l--~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~  266 (510)
                      +.+.|.+++++|+.||+|++++|  ...++. ..  .+++|||.|+|.++|.+|++.|+.++.+.+.+|| .+..++...
T Consensus        92 ~~~~i~~~l~~g~~vi~d~~~~~--~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~  169 (204)
T 2qor_A           92 LKSEYDLAVGEGKICLFEMNING--VKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQELTREMDEA  169 (204)
T ss_dssp             EHHHHHHHHHTTCEEEEECCHHH--HHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCeEEEEECHHH--HHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            77899999999999999999988  666665 33  5799999999999999999999988888888889 554566521


Q ss_pred             CCCCccEEEeCCCHHHHHHHHHHHHHHH
Q psy6613         267 PQEMFDVILDENQLEDACEHIAEYLEAY  294 (510)
Q Consensus       267 ~~~~FD~VIvNDdLd~A~~eL~~ileai  294 (510)
                      +...||++|+|+++++++++|.++|...
T Consensus       170 ~~~~~d~vi~n~~~e~~~~~i~~~i~~~  197 (204)
T 2qor_A          170 DKVGFNYFIVNDDLARTYAELREYLLGS  197 (204)
T ss_dssp             HHHTCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred             hhccCcEEEECcCHHHHHHHHHHHHHHH
Confidence            3468999999999999999999777653

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.82  E-value=7.4e-20  Score=171.94  Aligned_cols=142  Identities=18%  Similarity=0.275  Sum_probs=122.1

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhh---------------c-ccHHHHH
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEV---------------Q-TEIERVY  196 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I---------------~-TslesI~  196 (510)
                      +||+|+|||||.+.|+. +|..|+++++||||+|                 |...+               + ++.+.|.
T Consensus        10 vGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~g~~~~~i~   89 (198)
T 1lvg_A           10 SGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSKEAVR   89 (198)
T ss_dssp             ECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEEHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccCCCCHHHHH
Confidence            99999999999999998 7888999999999987                 21211               0 6788999


Q ss_pred             HHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhc-CCCCccE
Q psy6613         197 ELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQC-PQEMFDV  273 (510)
Q Consensus       197 ~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~-~~~~FD~  273 (510)
                      ++++.|+.|++|++++|  ...++. .+.|.+|||.||++..|.+++..+++++++.+.++| .+..++... +.+.||+
T Consensus        90 ~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~~a~~~~~~D~  167 (198)
T 1lvg_A           90 AVQAMNRICVLDVDLQG--VRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDL  167 (198)
T ss_dssp             HHHHTTCEEEEECCHHH--HHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGGGSTTTCSE
T ss_pred             HHHHcCCcEEEECCHHH--HHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCceE
Confidence            99999999999999988  666555 678999999999999999999999999999999999 666666543 4478999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHH
Q psy6613         274 ILDENQLEDACEHIAEYLEAY  294 (510)
Q Consensus       274 VIvNDdLd~A~~eL~~ileai  294 (510)
                      ||+|++++.|+++|.++|.+.
T Consensus       168 iivnd~le~a~~~l~~ii~~~  188 (198)
T 1lvg_A          168 VIINDDLDKAYATLKQALSEE  188 (198)
T ss_dssp             EEECSSHHHHHHHHHHHTHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHH
Confidence            999999999999999888654

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.75  E-value=9.1e-18  Score=154.95  Aligned_cols=142  Identities=16%  Similarity=0.199  Sum_probs=115.9

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhh-----------c-----c
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEV-----------Q-----T  190 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I-----------~-----T  190 (510)
                      |.++  +||+|+|||||.+.|.. .| .+.+...++||.+                 |....           +     +
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKALA-EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGT   85 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSS-SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCC-CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccc
Confidence            4555  99999999999999988 77 6777788888765                 11111           0     5


Q ss_pred             cHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCC
Q psy6613         191 EIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQ  268 (510)
Q Consensus       191 slesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~  268 (510)
                      ..+.|.++++.|++||+|+++++  +..++. ...+.+||+.||+.++|.+|+..|+.++.+.+.+|| .+..+++.  .
T Consensus        86 ~~~~i~~~l~~g~~vi~d~~~~~--~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~--~  161 (205)
T 3tr0_A           86 EKDWVLRQLKAGRDVLLEIDWQG--ARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEMAH--Y  161 (205)
T ss_dssp             EHHHHHHHHHTTCEEEEECCHHH--HHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHHHTT--G
T ss_pred             hHHHHHHHHHcCCeEEEEECHHH--HHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc--c
Confidence            66789999999999999999988  666655 678899999999999999999999988888888999 55444443  3


Q ss_pred             CCccEEEeCCCHHHHHHHHHHHHHH
Q psy6613         269 EMFDVILDENQLEDACEHIAEYLEA  293 (510)
Q Consensus       269 ~~FD~VIvNDdLd~A~~eL~~ilea  293 (510)
                      +.||+||+|+++++++++|..+|.+
T Consensus       162 ~~~d~vi~n~~~~~~~~~l~~~i~~  186 (205)
T 3tr0_A          162 KEFDYLVVNDNFDQAVQNLIHIISA  186 (205)
T ss_dssp             GGCSEEEECSSHHHHHHHHHHHHHH
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHHH
Confidence            7899999999999999999977654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.69  E-value=2.4e-17  Score=156.89  Aligned_cols=142  Identities=13%  Similarity=0.163  Sum_probs=97.5

Q ss_pred             CCeE--EecCcCChHHHHHHHh-c-CCCCceeeecCCCchh-----------------hhhhh-----------c-----
Q psy6613         147 GMII--ITRVTADISLAKRSLM-S-NPSKRAIMERSNSRSS-----------------VLTEV-----------Q-----  189 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL-~-~P~~F~~sVshTTR~p-----------------Fe~~I-----------~-----  189 (510)
                      |.++  +||+|+|||||.+.|. . .| .+...+++|||++                 |...+           .     
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQKN-NIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNFYG  105 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC-----CEEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCC-CcccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCceehhhhhccccCC
Confidence            4555  9999999999999999 7 65 4788899999887                 11110           0     


Q ss_pred             ccHHHHHHHHHcCCeEEEEeccCCchhHhhhcCC--CceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhc
Q psy6613         190 TEIERVYELASTLQLVVLDCDTINHPSQLAKTNL--SPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQC  266 (510)
Q Consensus       190 TslesI~~vi~sGKi~ILDID~qg~~lq~lks~l--~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~  266 (510)
                      ++.+.|.++++.|+.||+|+++++  ...++..+  .+++|||.||+.++|.+|+..|+..+.+.+.++| .+..+++. 
T Consensus       106 ~~~~~i~~~~~~~~~vild~~~~g--~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~-  182 (231)
T 3lnc_A          106 VPRKNLEDNVDKGVSTLLVIDWQG--AFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISH-  182 (231)
T ss_dssp             EECTTHHHHHHHTCEEEEECCHHH--HHHHHHHSGGGEEEEEEECSCHHHHHHC--------------CHHHHHHHHTT-
T ss_pred             CCHHHHHHHHHcCCeEEEEcCHHH--HHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh-
Confidence            456778999999999999999988  66666644  5789999999999999999999888888888888 55555554 


Q ss_pred             CCCCccEEEeCCCHHHHHHHHHHHHHH
Q psy6613         267 PQEMFDVILDENQLEDACEHIAEYLEA  293 (510)
Q Consensus       267 ~~~~FD~VIvNDdLd~A~~eL~~ilea  293 (510)
                       ...||+||+|+++++++++|..+|..
T Consensus       183 -~~~~d~vI~n~~~e~~~~~l~~~i~~  208 (231)
T 3lnc_A          183 -CEAYDYVIVNEDIEETADRISNILRA  208 (231)
T ss_dssp             -GGGSSEEEECSSHHHHHHHHHHHHHH
T ss_pred             -hcCCeEEEECcCHHHHHHHHHHHHHH
Confidence             37899999999999999999977754

>2d46_A Calcium channel, voltage-dependent, beta 4 subunit isoform A; Ca2+ channel, BETA4A subunit, nuclear magnetic resonance, alternative spliving; NMR {Homo sapiens}

Probab=99.67  E-value=1.4e-17  Score=129.13  Aligned_cols=43  Identities=51%  Similarity=0.744  Sum_probs=41.8

Q ss_pred             CCCCcccCCCCCC-CCCChhHhHHHHHHHHHHHHHHHHHHhccC
Q psy6613         329 SMGSAESNFSQPS-SDLSLDEEKETLRREKERQALSQLEKARVT  371 (510)
Q Consensus       329 ~~~s~~s~~s~ps-~~~s~~~~~~~~~~~~e~~a~~~l~~a~~~  371 (510)
                      .+||||||++||| ||+|||||||++|||+||||++||||||+|
T Consensus        17 ~~gSadS~~srpSdSD~SldEdrE~~RrE~ErqA~~QLekAk~K   60 (61)
T 2d46_A           17 EAGSADSYTSRPSDSDVSLEEDREAIRQEREQQAAIQLERAKSK   60 (61)
T ss_dssp             CCCSSEECCSSSCCCEECGGGCCTTTHHHHHHHHHHHHHHHTCC
T ss_pred             ccccccccCCCCCccccchhhhhHHHHHHHHHHHHHHHHHhhcC
Confidence            4899999999999 999999999999999999999999999997

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.61  E-value=1.3e-14  Score=138.30  Aligned_cols=145  Identities=11%  Similarity=0.121  Sum_probs=116.8

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhh---------------c-c
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEV---------------Q-T  190 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I---------------~-T  190 (510)
                      |.++  +||+|+|||||.+.|.. .|..+.+.+++|||++                 |...+               + +
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~  102 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYGT  102 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhcccccCCC
Confidence            4444  99999999999999988 7756666788888753                 22211               0 5


Q ss_pred             cHHHHHHHHHcCCeEEEEeccCCchhHhhhcCC---CceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhc
Q psy6613         191 EIERVYELASTLQLVVLDCDTINHPSQLAKTNL---SPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQC  266 (510)
Q Consensus       191 slesI~~vi~sGKi~ILDID~qg~~lq~lks~l---~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~  266 (510)
                      +...+.++++.++.|++|+++.|  .+..+..+   .|..|||.+|++..|.+++..++.++.+.+.++| .+..++...
T Consensus       103 ~~~~i~~~l~~~~~~il~~~lsg--gq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~  180 (218)
T 1z6g_A          103 LKSEYDKAKEQNKICLFEMNING--VKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEA  180 (218)
T ss_dssp             EHHHHHHHHHTTCEEEEEECHHH--HHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhCCCcEEEEecHHH--HHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Confidence            56789999999999999999998  77777644   6799999999999999999999999999999998 555554422


Q ss_pred             CCCCccEEEeCCCHHHHHHHHHHHHHH
Q psy6613         267 PQEMFDVILDENQLEDACEHIAEYLEA  293 (510)
Q Consensus       267 ~~~~FD~VIvNDdLd~A~~eL~~ilea  293 (510)
                      ....||+||+|+|+++|+..+..+|..
T Consensus       181 h~~~~d~iiv~~~~~ea~~~~~~ii~~  207 (218)
T 1z6g_A          181 NLLNFNLSIINDDLTLTYQQLKNYLLN  207 (218)
T ss_dssp             TTSCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred             cccCCCEEEECCCHHHHHHHHHHHHHH
Confidence            246899999999999999999977654

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=99.51  E-value=6e-14  Score=129.24  Aligned_cols=143  Identities=13%  Similarity=0.191  Sum_probs=88.4

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-C-CCCceeeecCCCchh-----------------hhhhh-----------c-----
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-N-PSKRAIMERSNSRSS-----------------VLTEV-----------Q-----  189 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~-P~~F~~sVshTTR~p-----------------Fe~~I-----------~-----  189 (510)
                      +.+|  +||+|+||||+.+.|.. . | .+.+.+.+++|.+                 |...+           .     
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   84 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDPST-SYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYG   84 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCTTC-CEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCC-CeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeecC
Confidence            3444  99999999999999988 5 5 4565677777754                 11110           0     


Q ss_pred             ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcC
Q psy6613         190 TEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCP  267 (510)
Q Consensus       190 TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~  267 (510)
                      +..+.+..+++.|+.||+|++..+  ...++. ..++++||+.||+.+++.+|+..|+..+.+.+.+++ ....+++.  
T Consensus        85 ~~~~~i~~~l~~g~~vv~d~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~~~~--  160 (207)
T 2j41_A           85 TPVQYVKDTMDEGHDVFLEIEVEG--AKQVRKKFPDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEARKEVEM--  160 (207)
T ss_dssp             EEHHHHHHHHHTTCEEEEECCGGG--HHHHHHHCTTSEEEEEECCC---------------------------CGGGG--
T ss_pred             CCHHHHHHHHHcCCeEEEEECHHH--HHHHHHhcCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc--
Confidence            346788889999999999999887  555555 447899999999999999999999876666677777 33333333  


Q ss_pred             CCCccEEEeCCCHHHHHHHHHHHHHHH
Q psy6613         268 QEMFDVILDENQLEDACEHIAEYLEAY  294 (510)
Q Consensus       268 ~~~FD~VIvNDdLd~A~~eL~~ileai  294 (510)
                      ...+|++|+|++++++++++.+++...
T Consensus       161 ~~~~d~vI~n~~~e~~~~~i~~~l~~~  187 (207)
T 2j41_A          161 MNLYDYVVVNDEVELAKNRIQCIVEAE  187 (207)
T ss_dssp             GGGCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHHHh
Confidence            257899999999999999999777654

>2d46_A Calcium channel, voltage-dependent, beta 4 subunit isoform A; Ca2+ channel, BETA4A subunit, nuclear magnetic resonance, alternative spliving; NMR {Homo sapiens}

Probab=99.39  E-value=9.6e-14  Score=107.80  Aligned_cols=44  Identities=52%  Similarity=0.750  Sum_probs=42.3

Q ss_pred             cccCCCCCCCcCC-CCccchhhhHHHhHHHHHHHHHHHhhhccCC
Q psy6613           2 VVGSAESNFSQPS-SDLSLDEEKETLRREKERQALSQLEKARAKN   45 (510)
Q Consensus         2 ~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~a~~~L~~a~~k~   45 (510)
                      .+||||||+|||| +|+|||+|+|++|+|+|+||+.||++|+.||
T Consensus        17 ~~gSadS~~srpSdSD~SldEdrE~~RrE~ErqA~~QLekAk~KP   61 (61)
T 2d46_A           17 EAGSADSYTSRPSDSDVSLEEDREAIRQEREQQAAIQLERAKSKP   61 (61)
T ss_dssp             CCCSSEECCSSSCCCEECGGGCCTTTHHHHHHHHHHHHHHHTCCC
T ss_pred             ccccccccCCCCCccccchhhhhHHHHHHHHHHHHHHHHHhhcCC
Confidence            3699999999999 9999999999999999999999999999987

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=2.7e-12  Score=103.89  Aligned_cols=62  Identities=13%  Similarity=0.233  Sum_probs=55.4

Q ss_pred             CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEe-ecCCCceEEEEccCCCceeeecChhH
Q psy6613          45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKE-KYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~-~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ....++||+|||++..++..||.+.+|+|++||+|+|++ +.+++||+|+.   +++.|+||++..
T Consensus         5 ~~~~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~---~g~~G~fP~~yv   67 (75)
T 2ege_A            5 SSGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGEL---GGHRGLVPAHLL   67 (75)
T ss_dssp             CCSEEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEES---SSCEEEEETTTE
T ss_pred             CCCcEEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEEE---CCcEEEEChHHe
Confidence            345679999999999998999999999999999999997 58899999997   578999999865

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=7.5e-12  Score=101.37  Aligned_cols=62  Identities=15%  Similarity=0.224  Sum_probs=55.3

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCC-CceEEEEccCCCceeeecChhHH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDS-NWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~-~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ...++||+|||++..++..||.+.+|+|++||+|+|+++.|+ +||.|+.   +++.|+||+...+
T Consensus         6 ~~~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~---~g~~G~~P~~yv~   68 (76)
T 2csi_A            6 SGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGEL---NGQKGLVPSNFLE   68 (76)
T ss_dssp             CSEEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEEE---TTEEEEEEGGGCC
T ss_pred             CccEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEEE---CCcEEEEehHHEE
Confidence            355799999999999999999999999999999999999775 7999997   5799999998754

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.24  E-value=5.3e-12  Score=99.28  Aligned_cols=52  Identities=23%  Similarity=0.514  Sum_probs=45.5

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChh
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPV  108 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~  108 (510)
                      .+||+|||.++.+++      .|+|++||+|.|+++.|++||.|++  .+|+.|+||++.
T Consensus         5 ~~rAlydy~~~~~~e------~Ls~~~Gd~i~v~~~~~~~Ww~g~~--~~G~~G~fP~ny   56 (60)
T 2lx7_A            5 RCRTLYPFSGERHGQ------GLRFAAGELITLLQVPDGGWWEGEK--EDGLRGWFPASY   56 (60)
T ss_dssp             EEEESCCCCSCCCSS------CCCCCTTCEEEBSCCCTTSCEEEEC--TTSCEEEECGGG
T ss_pred             EEEECcccCCCCCCC------CccCCCCCEEEEeEecCCCeEEEEe--CCCCEEEEcHHH
Confidence            689999999987642      4999999999999999999999986  347899999975

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.22  E-value=1.4e-11  Score=98.15  Aligned_cols=56  Identities=20%  Similarity=0.380  Sum_probs=48.9

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..+.+||+|||.+..++       +|+|++||+|.|+++.|++||.|++.. +|+.|+||++..
T Consensus         5 ~~~~~~Alydy~a~~~~-------ELs~~~Gd~i~v~~~~~~gWw~g~~~~-~g~~G~~P~nyV   60 (65)
T 2lj0_A            5 DLFSYQALYSYIPQNDD-------ELELRDGDIVDVMEKCDDGWFVGTSRR-TKQFGTFPGNYV   60 (65)
T ss_dssp             SSCEEEESSCBCCSSTT-------BCCBCTTCEEEEEEECTTSEEEEEETT-TCCEEEEETTSE
T ss_pred             cCEEEEEceeECCCCcC-------CcCCCCCCEEEEeEeCCCCEEEEEECC-CCCEEEEehhHe
Confidence            45678999999999875       599999999999999999999999854 478999999754

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.20  E-value=2e-11  Score=96.54  Aligned_cols=58  Identities=19%  Similarity=0.458  Sum_probs=49.4

Q ss_pred             CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCC--ceeeecChhH
Q psy6613          45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGS--ECGFIPSPVK  109 (510)
Q Consensus        45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~--~~GlIPS~~~  109 (510)
                      +..+++||+|||.+..++       +|+|++||+|+|+++.+++||.|++.++++  +.|+||++..
T Consensus         5 ~~~~~~~Alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv   64 (68)
T 1tg0_A            5 EVPFKVVAQFPYKSDYED-------DLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFV   64 (68)
T ss_dssp             CSSEEEEESSCBCCSCTT-------BCCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGE
T ss_pred             CCCEEEEECeeECcCCcC-------CCCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHE
Confidence            356789999999998765       599999999999999999999999865432  7999998754

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.19  E-value=1.9e-11  Score=98.84  Aligned_cols=60  Identities=23%  Similarity=0.420  Sum_probs=51.2

Q ss_pred             cCCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          43 AKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        43 ~k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .++...++||+|||.+..++       +|+|++||+|+|+++.+++||.|++.+..++.|+||+...
T Consensus         6 ~~~~~~~~~alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv   65 (76)
T 2ed1_A            6 SGNKVRRVKTIYDCQADNDD-------ELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV   65 (76)
T ss_dssp             SSCCCEEEEESSCCCCSSSS-------BCCCCSSCEEEESSCCSSSEEEEEETTCTTCEEEEEGGGE
T ss_pred             CCCCCeEEEECccCCCCCcC-------CcCcCCCCEEEEEEecCCCEEEEEECCCCCCEEEEehHHe
Confidence            34556789999999998765       5999999999999999999999998654468999999765

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.16  E-value=2.2e-11  Score=121.18  Aligned_cols=146  Identities=10%  Similarity=0.001  Sum_probs=99.6

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecC-CCchh---hhhh----------hc-----c-cHHHHHHHHHcCCeEEEEe
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERS-NSRSS---VLTE----------VQ-----T-EIERVYELASTLQLVVLDC  209 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVsh-TTR~p---Fe~~----------I~-----T-slesI~~vi~sGKi~ILDI  209 (510)
                      +||+|+||||+.++|.+ .+. ...+|++ ++|.+   |...          +.     + ....|.+.++.|+.||||+
T Consensus        39 ~G~sGsGKSTla~~L~~~~~~-~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~~g~~vIld~  117 (287)
T 1gvn_B           39 GGQPGSGKTSLRSAIFEETQG-NVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEG  117 (287)
T ss_dssp             ECCTTSCTHHHHHHHHHHTTT-CCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHTCCEEECC
T ss_pred             ECCCCCCHHHHHHHHHHHhCC-CeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHhcCCeEEEEC
Confidence            99999999999999998 653 4456666 77654   3211          11     3 4466788889999999999


Q ss_pred             ccCCchh---Hhh---hc-CCC-ceEEEEeCCCHHHH--HHHHH---------hcCCC--cHHHHHHHH-HHHHHHHhcC
Q psy6613         210 DTINHPS---QLA---KT-NLS-PCIVYLKISSPKVL--QRLIK---------SRGKS--QTRHLNVQM-VAAEKLAQCP  267 (510)
Q Consensus       210 D~qg~~l---q~l---ks-~l~-PivIFIkPPS~e~L--~~rLr---------~Rgt~--~~e~i~kRL-~aa~eLEq~~  267 (510)
                      +.++ +.   +.+   +. .+. .+++|+.||+...|  .+|+.         .|+++  ..+.+.+|| .+..+|+.. 
T Consensus       118 ~~~~-~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~~~e~~~~i~~rl~~a~~el~~~-  195 (287)
T 1gvn_B          118 TGRT-TDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKT-  195 (287)
T ss_dssp             CCCC-SHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             CCCC-HHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHcC-
Confidence            9988 22   222   22 222 25677788887765  67753         35553  346677888 777888766 


Q ss_pred             CCCccEEEeCCCH--------HHHHHHHHHHHHHHHHhcCCCCCC
Q psy6613         268 QEMFDVILDENQL--------EDACEHIAEYLEAYWRATHPPAAP  304 (510)
Q Consensus       268 ~~~FD~VIvNDdL--------d~A~~eL~~ileai~~a~h~p~~~  304 (510)
                       +.||+|++||+.        +.+..++.    +++.+++...|.
T Consensus       196 -~~~d~v~v~d~~g~~ly~~~~~~~~~~~----~ii~~e~~r~~~  235 (287)
T 1gvn_B          196 -GLFSDIRLYNREGVKLYSSLETPSISPK----ETLEKELNRKVS  235 (287)
T ss_dssp             -TCCSCEEEECTTCCEEEETTTCTTSCHH----HHHHHHHSCCCC
T ss_pred             -CCCCeEEEEeCCCCEeeccCCCCCcCHH----HHHHHHHcCCCC
Confidence             789999999985        67777776    455555555554

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.14  E-value=5.5e-11  Score=91.41  Aligned_cols=54  Identities=22%  Similarity=0.566  Sum_probs=47.3

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ...++||+|||.+..++       +|+|++||+|.|+++.+++||.|++   +++.|+||+...
T Consensus         3 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   56 (59)
T 2g6f_X            3 LGSVVRAKFNFQQTNED-------ELSFSKGDVIHVTRVEEGGWWEGTH---NGRTGWFPSNYV   56 (59)
T ss_dssp             CCCEEEESSCBCCSSTT-------BCCBCTTCEEEEEEECTTSEEEEEE---TTEEEEEEGGGE
T ss_pred             CCcEEEECceeCCCCcC-------CcCCCCCCEEEEEEecCCCEEEEEE---CCcEEEEeHHHE
Confidence            44579999999998764       6999999999999999999999997   578999998754

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.13  E-value=5.3e-11  Score=93.94  Aligned_cols=53  Identities=25%  Similarity=0.552  Sum_probs=46.8

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .++||+|||.+..++       +|+|++||+|.|+++.+++||.|+..  +++.|+||++..
T Consensus         4 ~~~~Alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~~--~g~~G~~P~~yv   56 (65)
T 1b07_A            4 EYVRALFDFNGNDEE-------DLPFKKGDILRIRDKPEEQWWNAEDS--EGKRGMIPVPYV   56 (65)
T ss_dssp             CEEEESSCBCCSSTT-------BCCBCTTCEEEEEECSSSSEEEEECT--TSCEEEEEGGGE
T ss_pred             eEEEECCcCCCCCCC-------ccCCcCCCEEEEEEecCCCeEEEEEC--CCCEEEEChHHE
Confidence            478999999998775       59999999999999999999999964  478999999764

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.12  E-value=6.9e-11  Score=93.58  Aligned_cols=54  Identities=17%  Similarity=0.348  Sum_probs=47.4

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeec---CCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY---DSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~---d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..+++||+|||.+..++       +|+|++||+|+|+++.   +++||.|+.   +|+.|+||+...
T Consensus         2 ~~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~---~g~~G~~P~~yv   58 (69)
T 1wyx_A            2 LNVLAKALYDNVAESPD-------ELSFRKGDIMTVLEQDTQGLDGWWLCSL---HGRQGIVPGNRL   58 (69)
T ss_dssp             CEEEEEESSCBCCSSTT-------BCCBCTTCEEEEEETTGGGCTTEEEEEE---TTEEEEEEGGGE
T ss_pred             CCEEEEECccCCcCCCC-------ccCCcCCCEEEEeECCCCCCCCcEEEEE---CCcEEEechhhE
Confidence            45789999999998765       6999999999999997   799999996   578999998764

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.12  E-value=7.1e-11  Score=90.34  Aligned_cols=51  Identities=22%  Similarity=0.543  Sum_probs=45.8

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      +++|+|||.+..++       +|+|++||+|.|+++.+++||.|+.   +|+.|+||++..
T Consensus         3 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   53 (58)
T 1uti_A            3 WARALYDFEALEED-------ELGFRSGEVVEVLDSSNPSWWTGRL---HNKLGLFPANYV   53 (58)
T ss_dssp             EEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEECccCCCCCcC-------CCCCCCCCEEEEEEECCCCEEEEEE---CCeEEEeeHHHe
Confidence            68999999998764       6999999999999999999999998   478999998754

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.11  E-value=9e-11  Score=91.19  Aligned_cols=54  Identities=26%  Similarity=0.547  Sum_probs=47.2

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ...+++|+|||.+..++       +|+|++||+|.|+++.+++||.|++   .+..|+||+...
T Consensus         4 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   57 (62)
T 1uj0_A            4 MARRVRALYDFEAVEDN-------ELTFKHGELITVLDDSDANWWQGEN---HRGTGLFPSNFV   57 (62)
T ss_dssp             CCEEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             CCeEEEECccCCCCCcC-------CcCCCCCCEEEEEEeCCCCEEEEEE---CCCEEEechhHE
Confidence            35579999999998765       5999999999999999999999998   367999998764

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.11  E-value=7.4e-11  Score=91.11  Aligned_cols=53  Identities=21%  Similarity=0.387  Sum_probs=46.5

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChh
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPV  108 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~  108 (510)
                      ...+++|+|||.+..++       +|+|++||+|.|+++.+++||.|++   +++.|+||+..
T Consensus         5 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~y   57 (60)
T 2gnc_A            5 SPEFAIAKFDYVGRSAR-------ELSFKKGASLLLYHRASEDWWEGRH---NGIDGLVPHQY   57 (60)
T ss_dssp             -CEEEEESSCBCCSSTT-------BCCBCTTCEEEEEEEEETTEEEEEE---TTEEEEEEGGG
T ss_pred             CCEEEEECCCCCcCCcC-------CcCCCCCCEEEEEEecCCCEEEEEE---CCeEEEEeHhh
Confidence            35679999999998765       5999999999999998899999998   47999999875

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.11  E-value=5.1e-11  Score=96.43  Aligned_cols=61  Identities=23%  Similarity=0.497  Sum_probs=50.6

Q ss_pred             hhhccCCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          39 EKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        39 ~~a~~k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ++.-..+...++||+|||.+..++       +|+|++||+|.|+++.+++||.|++   .++.|+||+...
T Consensus         9 ~~~~~~~~~~~~~Alydy~a~~~~-------eLsf~~Gd~i~Vl~~~~~gWw~g~~---~g~~G~fP~~yV   69 (72)
T 2l0a_A            9 SHMNHQHEARKVRAIYDFEAAEDN-------ELTFKAGEIITVLDDSDPNWWKGET---HQGIGLFPSNFV   69 (72)
T ss_dssp             CCCCSCCCCEEEEESSCBCCSSTT-------BCCBCTTCEEEEEEEEETTEEEEEC---SSCEEECTTCCE
T ss_pred             cccCCCCCCeEEEECCccCCCCCC-------ccCCCCCCEEEEEEecCCCEEEEEE---CCCEEEechhhC
Confidence            343345566789999999998765       5999999999999999999999997   357999998753

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.11  E-value=7.7e-11  Score=89.84  Aligned_cols=52  Identities=25%  Similarity=0.587  Sum_probs=45.9

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ++||+|||.+..++       +|+|++||+|.|+++.+++||.|+..  +|+.|+||++..
T Consensus         3 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~--~g~~G~~P~~yv   54 (57)
T 1cka_A            3 YVRALFDFNGNDEE-------DLPFKKGDILRIRDKPEEQWWNAEDS--EGKRGMIPVPYV   54 (57)
T ss_dssp             EEEESSCBCCSSTT-------BCCBCTTCEEEEEECSSSSEEEEECT--TSCEEEEEGGGE
T ss_pred             EEEECCcCCCCCCC-------CCCCCCCCEEEEEEecCCCcEEEEeC--CCCEEEEeHHHE
Confidence            68999999998765       59999999999999999999999964  478999999754

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.11  E-value=8.4e-11  Score=96.18  Aligned_cols=58  Identities=22%  Similarity=0.345  Sum_probs=49.5

Q ss_pred             cCCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCC-ceEEEEccCCCceeeecChhHH
Q psy6613          43 AKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSN-WWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        43 ~k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~-WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ......++||+|||.+..++       +|+|++||+|+|+++.+++ ||.|+.   +|+.|+||+....
T Consensus         6 ~~~~~~~~~alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~gWw~g~~---~g~~G~fP~~yv~   64 (80)
T 2i0n_A            6 SPEFAKYARALKDYNVSDTS-------LLPFKRNDIITITFKDQENKWFMGQL---NGKEGSFPVDHVE   64 (80)
T ss_dssp             CCCCCCEEEESSCBCCCSSS-------SCCBCSSEEEEEEEESSSSSEEEEEE---TTEEEEEEGGGEE
T ss_pred             CCCCCeEEEECCCCCcCCCC-------CcCCCCCCEEEEEEecCCCCEEEEEE---CCcEEEechHHEE
Confidence            34456789999999998765       5999999999999998888 999996   5789999998754

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.11  E-value=7.4e-11  Score=91.95  Aligned_cols=56  Identities=23%  Similarity=0.490  Sum_probs=48.3

Q ss_pred             CCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          44 KNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        44 k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .....+++|+|||.+..++       +|+|++||+|.|+++.+++||.|+.   +++.|+||+...
T Consensus         6 ~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   61 (65)
T 3ulr_B            6 SDLGITAIALYDYQAAGDD-------EISFDPDDIITNIEMIDDGWWRGVC---KGRYGLFPANYV   61 (65)
T ss_dssp             SSCCSCEEECSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             CCCceEEEEEeeECCCCcC-------EeeEecCCEEEEEEecCCCEEEEEE---CCcEEEEehHHe
Confidence            3445679999999998765       5999999999999999999999996   578999998754

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.10  E-value=9.5e-11  Score=91.34  Aligned_cols=54  Identities=22%  Similarity=0.574  Sum_probs=47.4

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ...++||+|||.+..++       +|+|++||+|+|+++.+++||.|++   +++.|+||+...
T Consensus         5 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   58 (64)
T 2ak5_A            5 SQLVVRAKFNFQQTNED-------ELSFSKGDVIHVTRVEEGGWWEGTH---NGRTGWFPSNYV   58 (64)
T ss_dssp             CCCEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCTTSEEEEEE---TTEEEEEEGGGE
T ss_pred             CCEEEEEccccCCcCcC-------cccCCCCCEEEEeEecCCCEEEEEE---CCCEEEEehHHe
Confidence            35679999999998764       6999999999999999999999997   578999998764

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.10  E-value=1.1e-10  Score=89.08  Aligned_cols=53  Identities=23%  Similarity=0.573  Sum_probs=47.0

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..++||+|||.+..++       +|+|++||+|+|+++.+++||.+++   +++.|+||+...
T Consensus         3 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv   55 (58)
T 2drm_A            3 GIQVKALYDYDAQTGD-------ELTFKEGDTIIVHQKDPAGWWEGEL---NGKRGWVPANYV   55 (58)
T ss_dssp             CEEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCTTSEEEEEE---TTEEEEEEGGGE
T ss_pred             CcEEEECccCCCCCcC-------CcCCCCCCEEEEEEecCCCEEEEEE---CCcEEEEeHHHE
Confidence            4579999999998765       5999999999999999999999998   579999998754

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.10  E-value=1e-10  Score=89.63  Aligned_cols=51  Identities=18%  Similarity=0.383  Sum_probs=45.8

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      +++|+|||.+..++       +|+|++||+|.|+++.+++||.|+.   +++.|+||++..
T Consensus         4 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   54 (58)
T 1zx6_A            4 YVEALYQFDPQQDG-------DLGLKPGDKVQLLEKLSPEWYKGSC---NGRTGIFPANYV   54 (58)
T ss_dssp             EEEECSCBCCCSTT-------BCCBCTTCEEEEEEECSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEECceECCCCCC-------CccCCCCCEEEEEEecCCCEEEEEE---CCcEEEeeHHHE
Confidence            68999999998765       6999999999999999999999997   578999998754

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.10  E-value=9.1e-11  Score=90.61  Aligned_cols=53  Identities=11%  Similarity=0.365  Sum_probs=46.6

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ...+||+|||.+..++       +|+|++||+|.|+++.+++||.|+.   +|+.|+||++..
T Consensus         4 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv   56 (60)
T 1w70_A            4 HMRAEALFDFTGNSKL-------ELNFKAGDVIFLLSRINKDWLEGTV---RGATGIFPLSFV   56 (60)
T ss_dssp             SCEEEESSCBCCSSTT-------BCCBCTTCEEEEEEECSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             CcEEEECccCCcCCCC-------CccCCCCCEEEEEEeCCCCeEEEEE---CCCEEEechHHE
Confidence            3468999999998765       5999999999999999999999997   478999998753

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.10  E-value=9.5e-11  Score=89.50  Aligned_cols=52  Identities=23%  Similarity=0.489  Sum_probs=46.1

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .+++|+|||.+..++       +|+|++||+|.|+++.+++||.|++   +|+.|+||+...
T Consensus         3 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   54 (58)
T 1sem_A            3 KFVQALFDFNPQESG-------ELAFKRGDVITLINKDDPNWWEGQL---NNRRGIFPSNYV   54 (58)
T ss_dssp             CEEEESSCBCCSSTT-------BCCBCTTCEEEEEECSSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             eEEEECcCCCCCCCC-------CcCCCCCCEEEEEEecCCCEEEEEE---CCcEEEechHHe
Confidence            368999999998764       6999999999999999999999998   479999998754

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.10  E-value=9.8e-11  Score=93.44  Aligned_cols=55  Identities=20%  Similarity=0.397  Sum_probs=47.0

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ...+++|+|||.+..++       +|+|++||+|.|+++ +++||.|+..  +|+.|+||++...
T Consensus         3 ~~~~~~Alydy~a~~~~-------ELsf~~Gd~i~vl~~-~~~Ww~~~~~--~g~~G~~Psnyv~   57 (67)
T 2b86_A            3 EEVIVIAKWDYTAQQDQ-------ELDIKKNERLWLLDD-SKTWWRVRNA--ANRTGYVPSNYVE   57 (67)
T ss_dssp             CCEEEEESSCBCCSSTT-------SCCBCTTCEEEEEEC-SSSSCEEECT--TSCEEECCCCSEE
T ss_pred             CCeEEEEeeeECCCCCC-------ccccCCCCEEEEEec-CCCeEEEEeC--CCCEEEeChHHEe
Confidence            35689999999998775       599999999999999 4799999975  4789999998653

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.10  E-value=1e-10  Score=90.79  Aligned_cols=54  Identities=15%  Similarity=0.346  Sum_probs=47.1

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ...+++|+|||.+..++       +|+|++||+|+|+++.+++||.|+.   +|+.|+||+...
T Consensus         4 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   57 (62)
T 1k4u_S            4 KGSQVEALFSYEATQPE-------DLEFQEGDIILVLSKVNEEWLEGES---KGKVGIFPKVFV   57 (62)
T ss_dssp             CCEEEECCSCBCCCSSS-------BCCBCSSCEEEEEEESSSSCEEEEC---SSCEEEECGGGC
T ss_pred             CCeEEEECCCCCcCCCC-------CccCCCCCEEEEEEeCCCCEEEEEE---CCcEEEEeHHHE
Confidence            34579999999998765       5999999999999999999999995   578999998764

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.09  E-value=9.1e-11  Score=89.88  Aligned_cols=53  Identities=26%  Similarity=0.505  Sum_probs=46.2

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .+||+|||.+..++       +|+|++||+|+|+++.+++||.|+... .|+.|+||+...
T Consensus         2 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~~-~g~~G~~P~~yv   54 (58)
T 1jo8_A            2 WATAEYDYDAAEDN-------ELTFVENDKIINIEFVDDDWWLGELEK-DGSKGLFPSNYV   54 (58)
T ss_dssp             CEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEETT-TCCEEEEEGGGE
T ss_pred             EEEECceECCCCCC-------CcccCCCCEEEEEEecCCCcEEEEECC-CCCEEEechHHe
Confidence            47899999998765       599999999999999999999999853 378999998753

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.09  E-value=1.2e-10  Score=91.95  Aligned_cols=51  Identities=18%  Similarity=0.393  Sum_probs=45.8

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ++||+|||.+..++       +|+|++||+|.|+++.+++||.|+.   +|+.|+||++..
T Consensus         3 ~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~fP~~yv   53 (65)
T 2nwm_A            3 AARLKFDFQAQSPK-------ELTLQKGDIVYIHKEVDKNWLEGEH---HGRLGIFPANYV   53 (65)
T ss_dssp             EEEECSCBCCCSTT-------BCCBCTTCEEEEEECCTTTCEEEEE---TTEEEEECGGGE
T ss_pred             EEEEeeeECCCCcC-------ccCCcCCCEEEEEEecCCCEEEEEE---CCcEEEEehhhE
Confidence            58999999998765       5999999999999999999999996   579999999765

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.09  E-value=1.1e-10  Score=89.32  Aligned_cols=53  Identities=25%  Similarity=0.493  Sum_probs=46.7

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      .++||+|||.+..++       +|+|++||+|+|+++.+++||.|+.   +++.|+||++...
T Consensus         4 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~   56 (58)
T 1zlm_A            4 KVFRALYTFEPRTPD-------ELYFEEGDIIYITDMSDTNWWKGTS---KGRTGLIPSNYVA   56 (58)
T ss_dssp             EEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGEE
T ss_pred             EEEEECccCCCCCCC-------CccCCCCCEEEEEEeCCCCEEEEEE---CCCEEEEehHHEE
Confidence            468999999998764       6999999999999999999999997   5789999998643

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.09  E-value=9.1e-11  Score=89.86  Aligned_cols=52  Identities=21%  Similarity=0.525  Sum_probs=45.9

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      +.++|+|||.+..++       +|+|++||+|.|+++.+++||.|+.   +|+.|+||+...
T Consensus         2 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   53 (58)
T 2bz8_A            2 VEAIVEFDYQAQHDD-------ELTISVGEIITNIRKEDGGWWEGQI---NGRRGLFPDNFV   53 (58)
T ss_dssp             CCEEESSCBCCCSTT-------BCCBCTTCEEEEEECCTTTEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEECcccCCCCcC-------EeeECCCCEEEEEEeCCCCEEEEEE---CCeEEEEehHHe
Confidence            358899999998765       6999999999999999999999997   579999998764

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.09  E-value=1.2e-10  Score=88.83  Aligned_cols=52  Identities=25%  Similarity=0.570  Sum_probs=46.2

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .+++|+|||.+..++       +|+|++||+|+|+++.+++||.|++   +++.|+||+...
T Consensus         3 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   54 (58)
T 2vwf_A            3 TYVQALFDFDPQEDG-------ELGFRRGDFIHVMDNSDPNWWKGAC---HGQTGMFPRNYV   54 (58)
T ss_dssp             CEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             eEEEECceECCCCcC-------CcCCCCCCEEEEEEcCCCCEEEEEE---CCcEEEEchHHe
Confidence            368999999998765       6999999999999999999999998   578999998754

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.09  E-value=1.1e-10  Score=92.15  Aligned_cols=52  Identities=12%  Similarity=0.217  Sum_probs=45.6

Q ss_pred             eEEEEeeccCCC--CCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          48 FAVRTNVKYDGS--IDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        48 ~~VRAlfdY~~~--~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .++||+|||.+.  .++       +|+|++||+|.|+++.+++||.|+.   +|+.|+||+...
T Consensus         2 ~~~~al~dy~~~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~fP~~yv   55 (67)
T 2bzy_A            2 VFAKAIQKRVPCAYDKT-------ALALEVGDIVKVTRMNINGQWEGEV---NGRKGLFPFTHV   55 (67)
T ss_dssp             EEEEECSCBCSEEECTT-------BCCBCTTCEEEEEEECSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             cEEEEeeeECCCCCCCC-------ccccCCCCEEEEEEecCCCeEEEEe---CCcEEEEehHHe
Confidence            478999999997  543       6999999999999999999999976   578999999864

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=1.7e-10  Score=91.40  Aligned_cols=54  Identities=13%  Similarity=0.179  Sum_probs=47.2

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..-++||+|||.+..++       +|+|++||+|+|+++.+++||.++.   +++.|+||+...
T Consensus         6 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   59 (68)
T 2dmo_A            6 SGEAHRVLFGFVPETKE-------ELQVMPGNIVFVLKKGNDNWATVMF---NGQKGLVPCNYL   59 (68)
T ss_dssp             CSEEEEECSSCCCCSSS-------SCCCCTTCEEEECEECSSSCEEEEE---TTEEEEECSTTE
T ss_pred             CCCEEEECcCCCcCCcC-------CCCCCCCCEEEEEEeCCCCEEEEEe---CCCEEEeehHHe
Confidence            34579999999998765       5999999999999999999999976   578999998764

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.08  E-value=1.4e-10  Score=93.41  Aligned_cols=59  Identities=19%  Similarity=0.424  Sum_probs=49.3

Q ss_pred             CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCce------eeecChhHH
Q psy6613          45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSEC------GFIPSPVKL  110 (510)
Q Consensus        45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~------GlIPS~~~~  110 (510)
                      +...+++|+|||.+..++       +|+|++||+|+|+++.+++||.|++..+.+..      |+||+....
T Consensus         5 ~~~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~   69 (77)
T 2d8j_A            5 SSGQYFVALFDYQARTAE-------DLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVA   69 (77)
T ss_dssp             SCCEEEEESSCBCCSSSS-------BCCBCTTCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTEE
T ss_pred             CCCCEEEEccCCCCCCCC-------ccCCCCCCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHee
Confidence            345589999999998765       59999999999999999999999996432566      999997653

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.08  E-value=1.3e-10  Score=92.69  Aligned_cols=53  Identities=19%  Similarity=0.418  Sum_probs=47.0

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      .++||+|||.+..++       +|+|++||+|.|+++.+++||.|+.   +|+.|+||+....
T Consensus         4 ~~~~Alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~   56 (68)
T 2ew3_A            4 PCCRGLYDFEPENQG-------ELGFKEGDIITLTNQIDENWYEGMI---HGESGFFPINYVE   56 (68)
T ss_dssp             CEEEESSCBCCCSTT-------BCCBCTTCEEEEEEESSSSEEEEEE---TTEEEEEEGGGEE
T ss_pred             CEEEEeeeECCCCCC-------ccCCCCCCEEEEEEecCCCEEEEEE---CCcEEEeeHHHEE
Confidence            368999999998765       5999999999999999999999997   5799999998654

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.08  E-value=1.4e-10  Score=89.34  Aligned_cols=53  Identities=26%  Similarity=0.564  Sum_probs=46.7

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..++||+|||.+..++       +|+|++||+|+|+++.+++||.|++   +++.|+||+...
T Consensus         5 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   57 (60)
T 2xmf_A            5 SPQCKALYAYDAQDTD-------ELSFNANDIIDIIKEDPSGWWTGRL---RGKQGLFPNNYV   57 (60)
T ss_dssp             SCEEEESSCBCCSSTT-------BCCBCTTCEEEEEEECTTSEEEEEE---TTEEEEEEGGGE
T ss_pred             CcEEEECccCCcCCcC-------CcCCCCCCEEEEEEecCCCEEEEEE---CCEEEEEcHHHE
Confidence            3468999999998764       5999999999999999999999998   578999998753

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.08  E-value=1.5e-10  Score=91.10  Aligned_cols=57  Identities=21%  Similarity=0.376  Sum_probs=48.5

Q ss_pred             CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      |....+||+|||.+..++       +|+|++||+|.|+++.+++||.|++.+ .++.|+||+...
T Consensus         4 p~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~~-~g~~G~~P~~yv   60 (67)
T 2o9s_A            4 PFTGEAIAKFNFNGDTQV-------EMSFRKGERITLLRQVDENWYEGRIPG-TSRQGIFPITYV   60 (67)
T ss_dssp             TTSEEEEECSCBCCSSTT-------BCCBCTTCEEEEEEECSSSEEEEECTT-SSCEEEEEGGGE
T ss_pred             CCCEEEEECccCCcCCcC-------ccCCCCCCEEEEEEecCCCEEEEEECC-CCCEEEEChHHe
Confidence            345679999999998765       599999999999999999999999854 258999998754

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=1.9e-10  Score=95.51  Aligned_cols=56  Identities=27%  Similarity=0.509  Sum_probs=48.8

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ...++||+|||.+..++       +|+|++||+|+|+++.+++||.|++   .+..|+||+.....
T Consensus        16 ~~~~~~Alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   71 (88)
T 1x2q_A           16 VARKVRALYDFEAVEDN-------ELTFKHGEIIIVLDDSDANWWKGEN---HRGIGLFPSNFVTT   71 (88)
T ss_dssp             CCEEEEESSCCCCCSSS-------CCCCCSSCEEEEEECSCSSSEEEEE---TTEEEEECGGGEES
T ss_pred             CCeEEEEcccCCCCCcC-------ccCCCCCCEEEEEEeCCCCEEEEEE---CCcEEEEehHHEEE
Confidence            45689999999998775       5999999999999999999999998   36799999987643

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.07  E-value=1.7e-10  Score=91.97  Aligned_cols=57  Identities=25%  Similarity=0.453  Sum_probs=48.6

Q ss_pred             CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      +...+++|+|||.+..++       +|+|++||+|+|+++.+++||.|++.. +++.|+||+...
T Consensus        13 ~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~~-~g~~G~~P~~yv   69 (73)
T 3h0h_A           13 TGVTLFVALYDYEAITED-------DLSFHKGEKFQILNSSEGDWWEARSLT-TGETGYIPSNYV   69 (73)
T ss_dssp             STTCEEEESSCBCCSSTT-------BCCBCTTCEEEEEECSSSSEEEEEETT-TCCEEEEEGGGE
T ss_pred             CCCEEEEECccCCCCCCC-------cceEeCCCEEEEEEecCCCeEEEEECC-CCCEEEEEHHHe
Confidence            334578899999998765       699999999999999999999999863 468999998764

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.07  E-value=1.4e-10  Score=90.15  Aligned_cols=52  Identities=21%  Similarity=0.428  Sum_probs=45.7

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEee-cCCCceEEEEccCCCceeeecChhH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK-YDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~-~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      +.+||+|||.+..++       +|+|++||+|.|+++ .+++||.|+.   +|+.|+||+...
T Consensus         2 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~Ww~g~~---~g~~G~~P~~yv   54 (62)
T 2j6f_A            2 VDYIVEYDYDAVHDD-------ELTIRVGEIIRNVKKLQEEGWLEGEL---NGRRGMFPDNFV   54 (62)
T ss_dssp             CCEEECSCBCCSSTT-------BCCBCTTCEEEEEEECSSTTEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEECccCCcCCcC-------CcCCcCCCEEEEEEecCCCCEEEEEE---CCcEEEechHHE
Confidence            348999999998765       599999999999999 8899999996   579999998764

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=2.2e-10  Score=91.74  Aligned_cols=56  Identities=27%  Similarity=0.497  Sum_probs=47.8

Q ss_pred             CCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEee---cCCCceEEEEccCCCceeeecChhH
Q psy6613          44 KNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK---YDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        44 k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~---~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .+...++||+|||.+..++       +|+|++||+|+|+++   .+++||.|+.   +++.|+||+...
T Consensus         5 ~~~~~~~~alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~---~g~~G~~P~~yv   63 (73)
T 2dl7_A            5 SSGVCFVKALYDYEGQTDD-------ELSFPEGAIIRILNKENQDDDGFWEGEF---NGRIGVFPSVLV   63 (73)
T ss_dssp             CCCCEEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCCSSSSSCEEEEE---TTEEEEECSSSE
T ss_pred             CCCCEEEEECccCCcCCCC-------cCCCCCCCEEEEEECCCCCCCCcEEEEE---CCCEEEEChHHE
Confidence            3456689999999998765       599999999999998   4889999996   578999998764

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.06  E-value=1.3e-10  Score=91.87  Aligned_cols=54  Identities=19%  Similarity=0.238  Sum_probs=45.5

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .++||+|||.+..++     ..+|+|++||+|+|+++.+++||.|+.   +|+.|+||+...
T Consensus         7 ~~~~alydy~~~~~~-----~~eLs~~~Gd~i~v~~~~~~gWw~g~~---~g~~G~fP~~yv   60 (67)
T 2eyx_A            7 IYARVIQKRVPNAYD-----KTALALEVGELVKVTKINVSGQWEGEC---NGKRGHFPFTHV   60 (67)
T ss_dssp             CBEEECCCBCCCTTC-----SSBCCBCSSEEEEEEEECTTSEEEEEE---TTEEEEEEGGGB
T ss_pred             EEEEEeEEECCCCCC-----CCccccCCCCEEEEEEecCCCEEEEEE---CCCEEEEehHhE
Confidence            468999999998221     237999999999999999999999977   579999998764

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.06  E-value=2.2e-10  Score=93.16  Aligned_cols=57  Identities=23%  Similarity=0.423  Sum_probs=48.9

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCC--CceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEG--SECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~--~~~GlIPS~~~~  110 (510)
                      ..++||+|||.+..++       +|+|++||+|+|+++.+++||.|++..++  ++.|+||+....
T Consensus         7 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv~   65 (80)
T 1ue9_A            7 GEIAQVTSAYVASGSE-------QLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK   65 (80)
T ss_dssp             CEEEEECSCCCCCSTT-------BCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEE
T ss_pred             CeEEEECcccCCCCCC-------CCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEchHHeE
Confidence            4578999999998765       59999999999999999999999997443  589999998653

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.06  E-value=1.8e-10  Score=91.39  Aligned_cols=55  Identities=13%  Similarity=0.282  Sum_probs=46.9

Q ss_pred             CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      +...++||+|||.+..++       +|+|++||+|+|+++.+++||.|+.   +++.|+||+...
T Consensus        11 ~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv   65 (72)
T 4glm_A           11 GALTYGVALYRFQALEPN-------ELDFEVGDKIRILATLEDGWLEGSL---KGRTGIFPYRFV   65 (72)
T ss_dssp             --CCEEEESSCBCCCSTT-------BCCBCTTCEEEEEEECSTTEEEEEE---TTEEEEEEGGGE
T ss_pred             CCCeEEEECccCCCCCCC-------cCCCCCCCEEEEEEccCCCEEEEEE---CCcEEEEChHHe
Confidence            345679999999998765       5999999999999999999999996   578999998764

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.06  E-value=1.7e-10  Score=89.47  Aligned_cols=53  Identities=11%  Similarity=0.302  Sum_probs=46.4

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ++||+|||.+..++       +|+|++||+|.|+++.+++||.|++.. +++.|+||+...
T Consensus         5 ~~~al~~y~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~~~-~g~~G~fP~~yv   57 (62)
T 2fpe_A            5 THRAIFRFVPRHED-------ELELEVDDPLLVELQAEDYWYEAYNMR-TGARGVFPAYYA   57 (62)
T ss_dssp             CEEECSCBCCSSTT-------BCCBCTTCEEEEEEECTTSEEEEEETT-TCCEEEEEGGGE
T ss_pred             EEEECccCCccCcC-------cCcCCCCCEEEEEEecCCCEEEEEECC-CCCEEEechHHE
Confidence            57899999998765       599999999999999999999999754 478999998764

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.05  E-value=1.5e-10  Score=92.20  Aligned_cols=56  Identities=18%  Similarity=0.498  Sum_probs=47.8

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCce---eeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSEC---GFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~---GlIPS~~~  109 (510)
                      ...+++|+|||.+..++       +|+|++||+|+| ++.+++||.|++..++|+.   |+||++..
T Consensus         9 ~~~~~~alydy~~~~~~-------eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv   67 (72)
T 2kgt_A            9 LGPKYVGLWDFKSRTDE-------ELSFRAGDVFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYL   67 (72)
T ss_dssp             CCCEEECCTTCBCSSTT-------SCBCCTTCCEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTS
T ss_pred             CCcEEEEcccCCCCCcC-------CcCCCCCCEEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHE
Confidence            34579999999998765       599999999999 9889999999986544678   99999764

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=2e-10  Score=90.76  Aligned_cols=55  Identities=24%  Similarity=0.485  Sum_probs=47.8

Q ss_pred             CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      +...++||+|||.+..++       +|+|++||+|+|+++.+++||.|+.   +++.|+||+...
T Consensus         5 ~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   59 (68)
T 1x2k_A            5 SSGKVFRALYTFEPRTPD-------ELYFEEGDIIYITDMSDTNWWKGTS---KGRTGLIPSNYV   59 (68)
T ss_dssp             CCSEEEEESSCCCCCSTT-------BCCCCSSCEEEEEECSCSSEEEEES---SSCEEEEETTTE
T ss_pred             CCcEEEEECceECCCCCC-------cccCCCCCEEEEEEcCCCCEEEEEE---CCcEEEEehHHe
Confidence            345579999999998764       6999999999999999999999996   578999998764

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.05  E-value=2.6e-10  Score=88.90  Aligned_cols=54  Identities=28%  Similarity=0.578  Sum_probs=46.2

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeec--CCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY--DSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~--d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ...++||+|||.+..++       +|+|++||+|+|+++.  +++||.|+.   +|+.|+||+...
T Consensus         5 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~W~~g~~---~g~~G~~P~~yv   60 (64)
T 2jte_A            5 AKEYCRTLFPYTGTNED-------ELTFREGEIIHLISKETGEAGWWKGEL---NGKEGVFPDNFA   60 (64)
T ss_dssp             SSEEEEESSCBCCSSSS-------BCCBCTTCEEEEEESCSSSTTEEEEEE---TTEEEEEEGGGE
T ss_pred             CCEEEEECccCCccCCC-------ccCCCCCCEEEEEECCCCCCCEEEEEE---CCeEEEEeHHHE
Confidence            34578999999998765       6999999999999985  789999997   579999998753

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.05  E-value=2.1e-10  Score=91.77  Aligned_cols=52  Identities=21%  Similarity=0.475  Sum_probs=46.0

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeec--CCCceEEEEccCCCceeeecChhHH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY--DSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~--d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ++||+|||.+..++       +|+|++||+|.|+++.  +++||.|+.   +|+.|+||+....
T Consensus         4 ~~~Alydy~a~~~~-------eLs~~~Gd~i~vl~~~~~~~gWw~g~~---~g~~G~~P~~yV~   57 (69)
T 2ydl_A            4 YCKVIFPYEAQNDD-------ELTIKEGDIVTLINKDCIDVGWWEGEL---NGRRGVFPDNFVK   57 (69)
T ss_dssp             EEEESSCBCCCSTT-------BCCBCTTCEEEEEESCCSSTTEEEEEE---TTEEEEEEGGGEE
T ss_pred             EEEEcccCCCCCCC-------ccccCCCCEEEEEEcCCCCCCEEEEEE---CCcEEEecHHHEE
Confidence            68999999998765       5999999999999996  899999997   5799999998653

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.05  E-value=1.8e-10  Score=89.48  Aligned_cols=54  Identities=20%  Similarity=0.510  Sum_probs=46.2

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ...++||+|||.+..++       +|+|++||+|.|+++.+++||.|+.   +++.|+||+...
T Consensus         6 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv   59 (65)
T 3u23_A            6 KKRQCKVLFEYIPQNED-------ELELKVGDIIDINEEVEEGWWSGTL---NNKLGLFPSNFV   59 (65)
T ss_dssp             --CEEEECSCBCCSSTT-------BCCBCTTCEEEEEEEEETTEEEEEE---TTEEEEEEGGGE
T ss_pred             CCeEEEEeeeeCCCCcC-------CcCCCCCCEEEEEEecCCCEEEEEE---CCCEEEeehHHE
Confidence            34579999999998764       5999999999999999999999996   578999998754

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.05  E-value=2.7e-10  Score=89.90  Aligned_cols=54  Identities=17%  Similarity=0.460  Sum_probs=47.3

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ...++||+|||.+..++       +|+|++||+|+|+++.+++||.|+.   +++.|+||+...
T Consensus         6 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   59 (68)
T 2djq_A            6 SGPRAKALCNYRGKNPG-------DLKFNKGDVILLRRQLDENWYQGEI---NGVSGIFPASSV   59 (68)
T ss_dssp             SCCEEEECSCCCSCCTT-------CCCCCTTCEEEEEECCCSSEEEEEE---TTEEEEEESSSE
T ss_pred             CceEEEECCCCCCCCcC-------CccCCCCCEEEEEEecCCCEEEEEE---CCcEEEeehHHE
Confidence            34579999999998765       5999999999999999999999996   578999998764

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.04  E-value=2.1e-10  Score=95.12  Aligned_cols=58  Identities=14%  Similarity=0.310  Sum_probs=47.2

Q ss_pred             CCeeEEEEeecc-CCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccC---CCceeeecChhH
Q psy6613          45 NVAFAVRTNVKY-DGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKE---GSECGFIPSPVK  109 (510)
Q Consensus        45 ~~~~~VRAlfdY-~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~---~~~~GlIPS~~~  109 (510)
                      ....++||+||| .+..++       +|+|++||+|.|+++.+++||.|++.+.   .++.|+||+...
T Consensus        16 ~~~~~~~Alydy~~a~~~~-------eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV   77 (83)
T 2ke9_A           16 RGSLKVRALKDFWNLHDPT-------ALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIV   77 (83)
T ss_dssp             -CCEEEEESSCBCCCSCTT-------BCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGE
T ss_pred             CCCeEEEEccccCCCCCCC-------cccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHE
Confidence            345689999999 666654       6999999999999999999999997531   258999998754

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.04  E-value=8.6e-11  Score=92.95  Aligned_cols=52  Identities=21%  Similarity=0.550  Sum_probs=46.2

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ++||+|||.+..++       +|+|++||+|.|+++.+++||.|++   +|+.|+||+....
T Consensus         3 ~~~Alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~gWw~g~~---~g~~G~fP~~yv~   54 (65)
T 2fei_A            3 QCKVLFEYIPQNED-------ELELKVGDIIDINEEVEEGWWSGTL---NNKLGLFPSNFVK   54 (65)
T ss_dssp             EEECSSCCCCCSTT-------BCCCCTTCEEECCCCSSSSEEEEES---SSCEEEEETTTSC
T ss_pred             EEEECccCCcCCcC-------ccCCCCCCEEEEEEecCCCEEEEEE---CCcEEEecHHHEE
Confidence            68999999998765       5999999999999999999999985   5789999997653

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.04  E-value=2.7e-10  Score=89.24  Aligned_cols=54  Identities=19%  Similarity=0.310  Sum_probs=46.3

Q ss_pred             eEEEEeeccCC-CCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          48 FAVRTNVKYDG-SIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        48 ~~VRAlfdY~~-~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..+||+|||.+ ..++       +|+|++||+|.|++..+++||.|++.. +++.|+||++..
T Consensus         6 ~~~~alydy~~~~~~~-------eLs~~~Gd~i~v~~~~~~gW~~g~~~~-~g~~G~~P~~yv   60 (65)
T 2j05_A            6 RRVRAILPYTKVPDTD-------EISFLKGDMFIVHNELEDGWMWVTNLR-TDEQGLIVEDLV   60 (65)
T ss_dssp             CEEEESSCBCCCTTSS-------BCCBCTTCEEEEEEECTTSEEEEEETT-TCCEEEEEGGGE
T ss_pred             cEEEEccccCCCCCCC-------cCcCCCCCEEEEeEecCCCEEEEEECC-CCCEEEEEhHHe
Confidence            46899999999 6654       699999999999999999999999653 478999999764

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=2.6e-10  Score=94.85  Aligned_cols=55  Identities=11%  Similarity=0.174  Sum_probs=46.7

Q ss_pred             CeeEEEEeeccCCC--CCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          46 VAFAVRTNVKYDGS--IDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        46 ~~~~VRAlfdY~~~--~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ...++||+|||.+.  .++       +|+|++||+|+|+++.+++||.|++   +++.|+||+....
T Consensus        15 ~~~~~~alydy~~~a~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~fP~~yv~   71 (88)
T 2dbk_A           15 GPVFAKAIQKRVPCAYDKT-------ALALEVGDIVKVTRMNINGQWEGEV---NGRKGLFPFTHVK   71 (88)
T ss_dssp             CCEEEEECSCBCCCTTCSS-------BCCBCTTCEEEEEEECTTSCEEEEC---SSCEEEECTTTEE
T ss_pred             CCEEEEEcccccCCCCCCC-------cccCCCCCEEEEEEecCCCEEEEEe---CCCEEEEehHHeE
Confidence            34579999999965  543       6999999999999999999999976   4789999998753

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.04  E-value=2.5e-10  Score=87.88  Aligned_cols=52  Identities=19%  Similarity=0.459  Sum_probs=45.4

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeec--CCCceEEEEccCCCceeeecChhH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY--DSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~--d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .++||+|||.+..++       +|+|++||+|+|+++.  +++||.|++   +++.|+||+...
T Consensus         4 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~Ww~g~~---~g~~G~~P~~yv   57 (60)
T 1oot_A            4 PKAVALYSFAGEESG-------DLPFRKGDVITILKKSDSQNDWWTGRV---NGREGIFPANYV   57 (60)
T ss_dssp             CEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSCTTSEEEEEE---TTEEEEEEGGGE
T ss_pred             cEEEECccCCcCCcC-------EeeEcCCCEEEEEEeCCCCCCeEEEEE---CCEEEEEeHHHE
Confidence            468999999998764       6999999999999986  789999998   579999998753

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=3.1e-10  Score=91.74  Aligned_cols=56  Identities=16%  Similarity=0.373  Sum_probs=47.8

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCC-CceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEG-SECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~-~~~GlIPS~~~~  110 (510)
                      ..++||+|||.+. ++       +|+|++||+|+|+++.+++||.+++...+ ++.|+||+...+
T Consensus        10 ~~~~~alydy~~~-~~-------eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv~   66 (75)
T 2egc_A           10 KDVYVSIADYEGD-EE-------TAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLE   66 (75)
T ss_dssp             CEEEEECSCBCCC-SS-------SCCBCTTCEEEECEECTTSEEEEEECCSSSCEEEEEEGGGEE
T ss_pred             CeEEEECCCcCCC-CC-------cCCCCCCCEEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHCE
Confidence            4568999999997 53       59999999999999999999999997543 589999998754

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.04  E-value=3e-10  Score=91.59  Aligned_cols=54  Identities=15%  Similarity=0.190  Sum_probs=46.0

Q ss_pred             CeeEEEEeeccCCC--CCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGS--IDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~--~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ....+||+|||.+.  .+       .+|+|++||+|.|+++.+++||.|+.   +++.|+||+...
T Consensus         8 ~~~~~~alydy~~~~~~~-------~eLs~~~Gd~i~v~~~~~~gWw~g~~---~g~~G~fP~~yv   63 (73)
T 2ebp_A            8 FCGRARVHTDFTPSPYDT-------DSLKLKKGDIIDIISKPPMGTWMGLL---NNKVGTFKFIYV   63 (73)
T ss_dssp             CSEEEEECSCBCCCTTCC-------SBCCBCSSCEEEEEECCSSSCEEEEC---SSCEEEECSTTE
T ss_pred             cceEEEEeeccCCCCCCC-------CccCCCCCCEEEEEEeCCCCeEEEEE---CCCEEEEeHHHE
Confidence            44579999999985  43       36999999999999999999999986   478999999764

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.04  E-value=2.3e-10  Score=91.07  Aligned_cols=57  Identities=18%  Similarity=0.327  Sum_probs=47.9

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEe-ecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKE-KYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~-~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ....++|+|||.+..++       +|+|++||+|+|++ ..+++||.|++.  +|+.|+||++...+
T Consensus        10 ~~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~Ww~g~~~--~g~~G~~P~~yv~~   67 (71)
T 1csk_A           10 SGTECIAKYNFHGTAEQ-------DLPFCKGDVLTIVAVTKDPNWYKAKNK--VGREGIIPANYVQK   67 (71)
T ss_dssp             -CEEEEESSCBCCSSTT-------BCCBCTTCEEEEEEECSSTTEEEEECT--TSCEEEEETTSEEC
T ss_pred             CCCEEEEceeECcCCCC-------cCCCCCCCEEEEeECCCCCCCEEEEeC--CCCEEEEehHHeEE
Confidence            34579999999998765       59999999999999 788999999953  57899999986543

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=1.5e-10  Score=95.67  Aligned_cols=57  Identities=16%  Similarity=0.265  Sum_probs=49.0

Q ss_pred             CCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEee--cCCCceEEEEccCCCceeeecChhHH
Q psy6613          44 KNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK--YDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        44 k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~--~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      +....++||+|||.+..++       +|+|++||+|+|+++  .+++||.|++   ++..|+||+....
T Consensus         5 ~~~~~~~~al~dy~~~~~~-------eLsf~~Gd~i~v~~~~~~~~~Ww~g~~---~g~~G~fP~~yv~   63 (85)
T 2dlp_A            5 SSGSGYVIALRSYITDNCS-------LLSFHRGDLIKLLPVATLEPGWQFGSA---GGRSGLFPADIVQ   63 (85)
T ss_dssp             SSCCCEEEESSCBCCSSSS-------BCCBCTTCEEEECCCSCCCTTEEEEES---SSCEEEEETTSEE
T ss_pred             CcCCEEEEECCCCCccCcC-------CccCcCCCEEEEEEccCCCCCeEEEEE---CCEEEEechHHeE
Confidence            3456789999999998765       699999999999998  8999999987   4789999998754

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.04  E-value=1.7e-10  Score=89.71  Aligned_cols=54  Identities=19%  Similarity=0.411  Sum_probs=46.2

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccC--C---CceeeecChhH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKE--G---SECGFIPSPVK  109 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~--~---~~~GlIPS~~~  109 (510)
                      +++|+|||.+..++       +|+|++||+|.|+++.+++||.|+...+  +   +..|+||+...
T Consensus         3 ~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv   61 (65)
T 2oaw_A            3 LVLALYDYQEKSPR-------EVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV   61 (65)
T ss_dssp             EEEECSCBCCSSTT-------BCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGE
T ss_pred             EEEEcccCCccCCC-------CCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHe
Confidence            68999999998764       6999999999999999999999998521  1   68999998754

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=1.4e-10  Score=98.35  Aligned_cols=62  Identities=16%  Similarity=0.222  Sum_probs=50.3

Q ss_pred             eeEEEEeeccCCCCCCCCCC-CCccccccCCceEEEEee-cCCCceEEEEccCCCceeeecChhHHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPV-HGYAVSFDIHEFLHIKEK-YDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc-~e~~LsF~~GDiL~V~~~-~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ..++||+|||++..++..|| .+.+|+|++||+|+|+++ .+++||+|++   +++.|+||+....+
T Consensus        17 ~~~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~~---~g~~G~~P~~yv~~   80 (97)
T 2csq_A           17 ARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGET---CARLGLIPCNMVSE   80 (97)
T ss_dssp             CEEEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEEE---TTEEEEEETTTSEE
T ss_pred             ceEEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEEE---CCcEEEEehHHeEE
Confidence            45789999999986554444 466899999999999976 4466999998   47999999987643

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=2.3e-10  Score=90.60  Aligned_cols=53  Identities=15%  Similarity=0.431  Sum_probs=46.3

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..+++|+|||.+..++       +|+|++||+|+|+++.+++||.|+.   +++.|+||+...
T Consensus         7 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   59 (68)
T 2dl4_A            7 GNTYVALYKFVPQENE-------DLEMRPGDIITLLEDSNEDWWKGKI---QDRIGFFPANFV   59 (68)
T ss_dssp             CCEEEESSCCCCSSTT-------BCCCCTTCEEEEEECCCSSEEEEEC---SSCEEEEETTTE
T ss_pred             CCEEEEeeeECCCCcC-------CcCCCCCCEEEEEEeCCCCEEEEEE---CCcEEEEehHHe
Confidence            3468999999998764       6999999999999999999999995   568999998764

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.04  E-value=1.9e-10  Score=97.37  Aligned_cols=63  Identities=11%  Similarity=0.173  Sum_probs=51.6

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEE-eecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIK-EKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~-~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ...++||+|||++..+ -.++.+.+|+|++||+|+|+ ++.+++||+|+..  +++.|+||+....+
T Consensus        16 ~~~~~~Alydy~~~~~-~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~--~g~~G~~Psnyv~~   79 (96)
T 1wie_A           16 KVHLCVARYSYNPFDG-PNENPEAELPLTAGKYLYVYGDMDEDGFYEGELL--DGQRGLVPSNFVDF   79 (96)
T ss_dssp             CEEEEEESSCCCGGGS-SCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEET--TCCBCBCCTTSEEC
T ss_pred             CCcEEEECCccCCCcc-cCCCCCCeeeECCCCEEEEeEecCCCCEEEEEEC--CCCEEEEchHHEEE
Confidence            4567999999999862 23445678999999999999 7889999999973  47899999987643

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.04  E-value=2.1e-10  Score=101.28  Aligned_cols=57  Identities=21%  Similarity=0.354  Sum_probs=50.0

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      .++++|+|||.+..++       +|+|++||+|.|+++.+++||.|+..+..|+.|+||++...
T Consensus         3 ~~~~~Alydy~a~~~~-------ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~   59 (120)
T 2kym_A            3 PLFAVTLYEFKAERDD-------ELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVR   59 (120)
T ss_dssp             CCEEEECSCBCCCSTT-------CCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEE
T ss_pred             CEEEEEcccCCCCCCC-------ccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEE
Confidence            4689999999998875       59999999999999999999999986556789999988764

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.04  E-value=3.3e-10  Score=86.21  Aligned_cols=53  Identities=21%  Similarity=0.427  Sum_probs=46.1

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      +.+||+|||.+..++       +|+|++||+|.|+++.+++||.|+.   +++.|+||+...+
T Consensus         2 ~~a~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv~   54 (58)
T 4e6r_A            2 IPAFVXFAYVAERED-------ELSLVXGSRVTVMEXCSDGWWRGSY---NGQIGWFPSNYVL   54 (58)
T ss_dssp             EEEEECSCBCCCSTT-------BCCBCTTCEEEEEEECTTSEEEEEE---TTEEEEEEGGGEE
T ss_pred             EEEEECccCCCCCCC-------EeeEeCCCEEEEeEcCCCCEEEEEE---CCcEEEEehHHEE
Confidence            468999999998765       5999999999999999999999965   5789999987653

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=2.7e-10  Score=91.10  Aligned_cols=54  Identities=22%  Similarity=0.428  Sum_probs=47.6

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ...++||+|||.+..++       +|+|++||+|+|+++.+++||.|++   +++.|+||+...
T Consensus         8 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   61 (72)
T 2dl8_A            8 EPIEAIAKFDYVGRTAR-------ELSFKKGASLLLYQRASDDWWEGRH---NGIDGLIPHQYI   61 (72)
T ss_dssp             SCEEEEESSCBCCSSSS-------BCCBCTTCEEEEEEEEETTEEEEEE---TTEEEEECSSSE
T ss_pred             CCEEEEECccCCcCCCC-------EeccCCCCEEEEEeecCCCEEEEEE---CCEEEEEchHHe
Confidence            45689999999998764       5999999999999999999999998   579999998764

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.03  E-value=3.2e-09  Score=99.42  Aligned_cols=140  Identities=21%  Similarity=0.224  Sum_probs=104.9

Q ss_pred             CCCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhh-----h------------
Q psy6613         146 PGMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTE-----V------------  188 (510)
Q Consensus       146 ~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~-----I------------  188 (510)
                      .|.++  +||+|+|||||.+.|.. .+ .+.+.+.+++|++                 |...     +            
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~-~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~   97 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERIP-NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHR   97 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHST-TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC-ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhh
Confidence            35555  99999999999999887 66 3445567777654                 1100     0            


Q ss_pred             -cccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHh
Q psy6613         189 -QTEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQ  265 (510)
Q Consensus       189 -~TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq  265 (510)
                       .++.+.+++.+.++..|+++++..|  +..++. ....+.+|+..|+...|.++...++.+.......++ +.-.++.+
T Consensus        98 ~g~~~~~~~~~~~~~~~~~~~l~~~g--l~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~  175 (207)
T 1znw_A           98 SGTLAQPVRAAAATGVPVLIEVDLAG--ARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAA  175 (207)
T ss_dssp             EEEEHHHHHHHHHHTCCEEEECCHHH--HHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHG
T ss_pred             cCCcHHHHHHHHHcCCeEEEEeCHHH--HHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Confidence             0345678888899999999988877  554444 567788999999999999999998877666677777 65566654


Q ss_pred             cCCCCccEEEeCCCHHHHHHHHHHH
Q psy6613         266 CPQEMFDVILDENQLEDACEHIAEY  290 (510)
Q Consensus       266 ~~~~~FD~VIvNDdLd~A~~eL~~i  290 (510)
                      .  +.++++++++|++.++.....+
T Consensus       176 ~--~g~tvi~vtHdl~~~~~~~d~i  198 (207)
T 1znw_A          176 Q--GDFDKVVVNRRLESACAELVSL  198 (207)
T ss_dssp             G--GGSSEEEECSSHHHHHHHHHHH
T ss_pred             h--ccCcEEEECCCHHHHHHHHHHH
Confidence            3  4689999999999998777633

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.03  E-value=2.8e-10  Score=91.25  Aligned_cols=53  Identities=19%  Similarity=0.463  Sum_probs=46.9

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..++||+|||.+..++       +|+|++||+|+|+++.+++||.|++   +|+.|+||++..
T Consensus        13 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv   65 (73)
T 3c0c_A           13 QPSCKALYDFEPENDG-------ELGFREGDLITLTNQIDENWYEGML---HGQSGFFPLSYV   65 (73)
T ss_dssp             SCEEEESSCBCCSSTT-------BCCBCTTCEEEEEEECSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             CeEEEECccCCCCCCC-------CccCcCCCEEEEEEecCCCEEEEEE---CCCEEEeChHHE
Confidence            4578999999998765       5999999999999999999999997   579999998754

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.03  E-value=3.2e-10  Score=87.92  Aligned_cols=54  Identities=28%  Similarity=0.443  Sum_probs=45.9

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..+++|+|||.+..++       +|+|++||+|.|+++.+ +||.|++.. +|+.|+||+...
T Consensus         6 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~-~Ww~g~~~~-~g~~G~~P~~yv   59 (62)
T 2iim_A            6 DNLVIALHSYEPSHDG-------DLGFEKGEQLRILEQSG-EWWKAQSLT-TGQEGFIPFNFV   59 (62)
T ss_dssp             TCEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCS-SEEEEEETT-TCCEEEEEGGGE
T ss_pred             CcEEEEcccCCCCCCC-------CcCCCCCCEEEEEEcCC-CEEEEEECC-CCCEEEEEHHHE
Confidence            4579999999998764       69999999999999964 999999753 478999998764

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=2.4e-10  Score=90.73  Aligned_cols=55  Identities=20%  Similarity=0.340  Sum_probs=47.3

Q ss_pred             CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeec---CCCceEEEEccCCCceeeecChhH
Q psy6613          45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY---DSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~---d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      +...++||+|||.+..++       +|+|++||+|+|+++.   +++||.|+.   +++.|+||+...
T Consensus         5 ~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~---~g~~G~~P~~yv   62 (71)
T 2cre_A            5 SSGLLARALYDNCPDCSD-------ELAFSRGDILTILEQHVPESEGWWKCLL---HGRQGLAPANRL   62 (71)
T ss_dssp             CCCEEEEESSCCCCSSSS-------BCCCCSSCCEEEEESCCTTSTTEEEEES---SSCCEEEETTTE
T ss_pred             CCcEEEEECcccCcCCCC-------CCCCCCCCEEEEeEcCCCCCCCcEEEEE---CCCEEEEehHHE
Confidence            345689999999998764       5999999999999997   899999994   578999998754

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.03  E-value=3.5e-10  Score=91.71  Aligned_cols=56  Identities=18%  Similarity=0.425  Sum_probs=48.6

Q ss_pred             CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ....++||+|||.+..++       +|+|++||+|.|+++.+++||.++.   ++..|+||+....
T Consensus         5 ~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~   60 (78)
T 2yuo_A            5 SSGRRAKALLDFERHDDD-------ELGFRKNDIITIISQKDEHCWVGEL---NGLRGWFPAKFVE   60 (78)
T ss_dssp             CCCEEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGEE
T ss_pred             CCceEEEECccCCCCCCC-------CccCCCCCEEEEEEecCCCEEEEEE---CCCEEEEehHHEE
Confidence            345679999999998765       5999999999999999999999996   4789999998764

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.03  E-value=2.8e-10  Score=90.41  Aligned_cols=56  Identities=21%  Similarity=0.488  Sum_probs=48.0

Q ss_pred             CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEee--cCCCceEEEEccCCCceeeecChhH
Q psy6613          45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK--YDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~--~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      +...+++|+|||.+..++       +|+|++||+|.|+++  .+++||.|+..  +|+.|+||+...
T Consensus         4 ~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~--~g~~G~~P~~yv   61 (71)
T 1u5s_A            4 RVLHVVQTLYPFSSVTEE-------ELNFEKGETMEVIEKPENDPEWWKCKNA--RGQVGLVPKNYV   61 (71)
T ss_dssp             CSSSEEEESSCCCCCSSS-------BCCCCSSCCEEEEECCCTTTCEEEEEET--TTEEEEEETTSE
T ss_pred             CccEEEEEcccCCCCCCC-------cccCCCCCEEEEEECCCCCCCCEEEEeC--CCCEEEEeHHHE
Confidence            445679999999998765       599999999999999  78999999864  479999999764

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.03  E-value=2.4e-10  Score=87.35  Aligned_cols=53  Identities=15%  Similarity=0.330  Sum_probs=46.1

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .+||+|||.+..++       +|+|++||+|.|+++.+++||.|+..+ +++.|+||+...
T Consensus         3 ~~~al~d~~~~~~~-------eLs~~~Gd~i~v~~~~~~gW~~g~~~~-~g~~G~~P~~yv   55 (59)
T 1yn8_A            3 RAVALYDFEPENDN-------ELRLAEGDIVFISYKHGQGWLVAENES-GSKTGLVPEEFV   55 (59)
T ss_dssp             EEEECSCBCCCSTT-------BCCBCTTCEEEEEEEEETTEEEEECTT-SSCEEEEEGGGE
T ss_pred             EEEECccCCCCCCC-------CcCCCCCCEEEEEEcCCCCeEEEEECC-CCCEEEEehHHe
Confidence            58999999998764       599999999999999999999999853 368999998753

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.03  E-value=3.2e-10  Score=87.39  Aligned_cols=52  Identities=15%  Similarity=0.355  Sum_probs=45.9

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .+++|+|||.+..++       +|+|++||+|.|+++.+++||.++.   +|+.|+||+...
T Consensus         7 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~---~g~~G~~P~~yv   58 (62)
T 3ngp_A            7 ELVLVLYDYQEKSPR-------ELTVKKGDILTLLNSTNKDWWKIEV---NGRQGFVPAAYL   58 (62)
T ss_dssp             CEEEECSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEECcCCCCCCCC-------CccCCCCCEEEEeEecCCCeEEEEE---CCEEEEEEHHHE
Confidence            368999999998764       5999999999999999999999996   578999998754

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.02  E-value=2.8e-10  Score=89.93  Aligned_cols=57  Identities=18%  Similarity=0.406  Sum_probs=48.7

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLEN  112 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~Er  112 (510)
                      .-+++|+|||.+..++       +|+|++||+|.|+++.+++||.|+.  .+|+.|+||+....+.
T Consensus         6 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~--~~g~~G~~P~~yv~~~   62 (69)
T 4esr_A            6 APTVVALYDYTANRSD-------ELTIHRGDIIRVFFKDNEDWWYGSI--GKGQEGYFPANHVASE   62 (69)
T ss_dssp             CCEEEESSCBCCCSTT-------BCCBCTTCEEEEEEECSSSEEEEEE--ETTEEEEEEGGGEEEH
T ss_pred             cCEEEECccCCCCCcC-------cCCCCCCCEEEEEEecCCCeEEEEe--CCCCEEEEchHHeEEC
Confidence            3468999999998764       5999999999999999999999987  2478999999876543

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=3.5e-10  Score=92.49  Aligned_cols=56  Identities=13%  Similarity=0.402  Sum_probs=48.6

Q ss_pred             CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ....++||+|||.+..++       +|+|++||+|.|+++.+++||.|++   +++.|+||+....
T Consensus         8 ~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~   63 (81)
T 2ysq_A            8 DSIVSAEAVWDHVTMANR-------ELAFKAGDVIKVLDASNKDWWWGQI---DDEEGWFPASFVR   63 (81)
T ss_dssp             CCCEEEEESSCCCCSSSS-------SCCCCTTCEEEEEECCSSSEEEEEC---SSCEEEEEGGGEE
T ss_pred             CCceEEEEeeeECCCCCC-------cCCCCCCCEEEEEEEcCcCEEEEEE---CCCEEEechHHEE
Confidence            346689999999998765       5999999999999999999999997   3789999987754

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.02  E-value=2.9e-10  Score=90.32  Aligned_cols=56  Identities=30%  Similarity=0.669  Sum_probs=47.1

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..+.+||+|+|.+..++     ..+|+|++||+|+|++. +++||.|+..  +|+.|+||++..
T Consensus         4 ~~~~~~alydy~~~~~~-----~~eLsf~~Gd~i~v~~~-~~~Ww~g~~~--~g~~G~~P~~yv   59 (70)
T 2vkn_A            4 FIYKAKALYPYDADDDD-----AYEISFEQNEILQVSDI-EGRWWKARRA--NGETGIIPSNYV   59 (70)
T ss_dssp             CEEEEEESSCBCCCSSS-----TTBCCBCTTCEEEEECT-TSSEEEEECT--TSCEEEEEGGGE
T ss_pred             cCEEEEECccCCCCCCC-----CCcccCCCCCEEEEEEc-CCCeEEEEEC--CCCEEEEehHHE
Confidence            46789999999998653     13699999999999987 7899999875  578999999764

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.02  E-value=2.3e-10  Score=90.52  Aligned_cols=55  Identities=20%  Similarity=0.342  Sum_probs=46.8

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ...++||+|||.+..++       +|+|++||+|+|+++.+++||.|++.  ++..|+||+...
T Consensus         6 ~~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~--~~~~G~~P~~yv   60 (69)
T 2eqi_A            6 SGRTVKALYDYKAKRSD-------ELTFCRGALIHNVSKEPGGWWKGDYG--TRIQQYFPSNYV   60 (69)
T ss_dssp             CCCEEEESSCBCCCSSS-------CCCBCTTCEEESCCCCSSSCEEEEET--TEEEEEECGGGE
T ss_pred             CCcEEEECeeECCCCcC-------ccCCCCCCEEEEEEcCCCCeEEEEEC--CCCEEEEchHHc
Confidence            35679999999998765       59999999999999999999999973  345599999764

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.02  E-value=3.1e-10  Score=87.76  Aligned_cols=52  Identities=27%  Similarity=0.520  Sum_probs=44.5

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCce-eeecChhH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSEC-GFIPSPVK  109 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~-GlIPS~~~  109 (510)
                      .++||+|||.+..++       +|+|++||+|.|+++.+++||.|++   .+.. |+||+...
T Consensus         4 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~gG~~P~~yv   56 (61)
T 1y0m_A            4 SAVKALFDYKAQRED-------ELTFTKSAIIQNVEKQDGGWWRGDY---GGKKQLWFPSNYV   56 (61)
T ss_dssp             CCEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEEGGGE
T ss_pred             CEEEECcCCCcCCCC-------CcCCcCCCEEEEEEecCCCEEEEEE---CCeEEEEEChHHc
Confidence            468999999998765       6999999999999999999999998   3455 49998754

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.01  E-value=4.2e-10  Score=86.30  Aligned_cols=54  Identities=15%  Similarity=0.381  Sum_probs=46.3

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEee-cCCCceEEEEccCCCceeeecChhH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK-YDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~-~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .+++|+|||.+..++       +|+|++||+|.|+++ .+++||.++... +++.|+||++..
T Consensus         3 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~-~g~~G~~P~~yv   57 (60)
T 2v1q_A            3 ERGIVQYDFMAESQD-------ELTIKSGDKVYILDDKKSKDWWMCQLVD-SGKSGLVPAQFI   57 (60)
T ss_dssp             CEEEECSCBCCCSTT-------BCCBCTTCEEEEEESSSCSSEEEEEETT-TCCEEEEEGGGE
T ss_pred             cEEEEeeeECCCCCC-------CccCCCCCEEEEEeCCCCCCCEEEEECC-CCCEEEEEHHHE
Confidence            368999999998765       599999999999998 589999999853 468999998753

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.01  E-value=2.3e-10  Score=90.67  Aligned_cols=56  Identities=21%  Similarity=0.387  Sum_probs=48.0

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ....++|+|||.+..++       +|+|++||+|+|+++.+++||.+++.+. ++.|+||+...
T Consensus         6 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~-g~~G~~P~~yv   61 (70)
T 2ecz_A            6 SGGEAIAKFNFNGDTQV-------EMSFRKGERITLLRQVDENWYEGRIPGT-SRQGIFPITYV   61 (70)
T ss_dssp             CCBCEEESSCCCCCSTT-------BCCCCTTCBCEEEEEEETTEEEEEETTT-TEEEEECTTTE
T ss_pred             CCCEEEECccCCCCCcC-------CcCCCCCCEEEEEEecCCCeEEEEECCC-CCEEEEchHHE
Confidence            34568999999998765       5999999999999998999999999542 58999998764

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.01  E-value=3.3e-10  Score=91.40  Aligned_cols=56  Identities=14%  Similarity=0.283  Sum_probs=48.2

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ...+||+|||.+..++       +|+|++||+|.|+++.+++||.|++.+ +|+.|+||++...
T Consensus         5 ~~~~~Alydy~a~~~~-------eLs~~~Gd~i~v~~~~~~gWw~g~~~~-~g~~G~~P~~yv~   60 (73)
T 2lcs_A            5 NQRAVALYDFEPENDN-------ELRLAEGDIVFISYKHGQGWLVAENES-GSKTGLVPEEFVS   60 (73)
T ss_dssp             CEEEEESSCBCCSSTT-------BCCBCTTCEEEEEEEETTTEEEEECTT-SSCEEEEESTTEE
T ss_pred             CCEEEECccCCCCCCC-------ccCCcCCCEEEEEEEcCCCEEEEEECC-CCCEEEeeHHHEE
Confidence            3578999999998765       599999999999999999999999853 3689999998754

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.01  E-value=5.1e-10  Score=88.77  Aligned_cols=55  Identities=15%  Similarity=0.375  Sum_probs=47.6

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeec-CCCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY-DSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~-d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..++||+|||.+..++       +|+|++||+|+|+++. +++||.|++.. +++.|+||+...
T Consensus         6 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~-~g~~G~~P~~yv   61 (71)
T 2jt4_A            6 KKRGIVQYDFMAESQD-------ELTIKSGDKVYILDDKKSKDWWMCQLVD-SGKSGLVPAQFI   61 (71)
T ss_dssp             CEEEEECSCBCCSSTT-------BCCBCTTCEEEEEESSSCSSEEEEEETT-TCCEEEEEGGGE
T ss_pred             CCEEEEcccCCCCCCC-------cccCCCCCEEEEEECCCCCCCEEEEECC-CCCeEEechHHe
Confidence            4579999999998765       5999999999999987 89999999854 468999998765

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.01  E-value=9.4e-11  Score=102.22  Aligned_cols=59  Identities=14%  Similarity=0.200  Sum_probs=49.5

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ..++++|+|||.+..++       +|+|++||+|.|+++.|++||+|++.+..+..|+||++....
T Consensus         4 ~~~~~~Alydy~a~~~~-------ELsf~~Gd~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV~~   62 (108)
T 2rqv_A            4 GSLYAIVLYDFKAEKAD-------ELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSI   62 (108)
T ss_dssp             SCCCEEESSCCCCCSSS-------BCCCCSSEEECCCCEETTTEEEECCSSSSCCCEEEESTTCBC
T ss_pred             CCeEEEECCCcCCCCCC-------cCCcCCCCEEEEeEecCCCEEEEEECCccCCeeEeecceEEE
Confidence            34679999999999875       599999999999999999999999854335669999987643

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.01  E-value=4.5e-10  Score=85.58  Aligned_cols=53  Identities=17%  Similarity=0.438  Sum_probs=45.2

Q ss_pred             EEEEeecc-CCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          49 AVRTNVKY-DGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        49 ~VRAlfdY-~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .++|+||| .+..++       +|+|++||+|.|+++.+++||.|++.. .++.|+||++..
T Consensus         2 ~~~al~d~~~~~~~~-------eLs~~~Gd~i~v~~~~~~gW~~g~~~~-~g~~G~~P~~yv   55 (58)
T 1zuy_A            2 MFEAAYDFPGSGSPS-------ELPLKKGDVIYITREEPSGWSLGKLLD-GSKEGWVPTAYM   55 (58)
T ss_dssp             EEEESSCBCCCSCTT-------BCCBCTTCEEEEEEECTTSEEEEEESS-CSCEEEEEGGGE
T ss_pred             EEEEecccCCCCCCC-------cCCCCCCCEEEEEEecCCCeEEEEECC-CCCEEEecHHHE
Confidence            47899999 676553       699999999999999999999999863 378999998764

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.01  E-value=2.2e-10  Score=88.27  Aligned_cols=51  Identities=18%  Similarity=0.449  Sum_probs=45.2

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      +++|+|||.+..++       +|+|++||+|.|+++ +++||.++..  +|..|+||++..
T Consensus         3 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~-~~~Ww~~~~~--~g~~G~~P~~yv   53 (60)
T 1i07_A            3 YAKSKYDFVARNSS-------ELSVMKDDVLEILDD-RRQWWKVRNA--SGDSGFVPNNIL   53 (60)
T ss_dssp             EEEESSCBCCSSTT-------BCCBCTTCEEEECGG-GCCEEEEECT--TSCEEEEEGGGE
T ss_pred             EEEECccCCCCCCC-------cccCCCCCEEEEEEc-CCCeEEEEEC--CCCEEEEEHHHe
Confidence            68999999998765       599999999999999 9999999975  478999999764

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.01  E-value=2.7e-10  Score=89.83  Aligned_cols=54  Identities=22%  Similarity=0.319  Sum_probs=46.9

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      +++|+|||.+..++       +|+|++||+|.|+++.+++||.|+..  +++.|+||+....+
T Consensus         4 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~--~g~~G~~P~~yv~~   57 (67)
T 1gl5_A            4 IVVAMYDFQATEAH-------DLRLERGQEYIILEKNDLHWWRARDK--YGSEGYIPSNYVTG   57 (67)
T ss_dssp             CEEECSCBCCSSSS-------BCCBCTTCEEEEEECSSSSEEEEECS--SSCEEEEETTSEES
T ss_pred             EEEECccCCCCCCC-------eecCCcCCEEEEEEccCCCcEEEEEC--CCCEEEEEhHhEEE
Confidence            58999999998765       59999999999999999999999964  47899999986543

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=2.8e-10  Score=92.06  Aligned_cols=55  Identities=24%  Similarity=0.468  Sum_probs=48.0

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ...+++|+|||.+..++       +|+|++||+|+|+++.+++||.|++   +++.|+||+....
T Consensus         9 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~   63 (76)
T 2epd_A            9 GVVEAVACFAYTGRTAQ-------ELSFRRGDVLRLHERASSDWWRGEH---NGMRGLIPHKYIT   63 (76)
T ss_dssp             CCEEEEESSCEECSSTT-------BCEECTTCEEEEEEEEETTEEEEEE---TTEEEEEESSSEE
T ss_pred             CCEEEEECcCCCCCCCC-------ccCCCCCCEEEEEEeCCCCEEEEEE---CCcEEEEehHHEE
Confidence            34679999999998764       5999999999999999999999998   5789999997653

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.00  E-value=3.5e-10  Score=93.92  Aligned_cols=56  Identities=16%  Similarity=0.330  Sum_probs=47.6

Q ss_pred             CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      +...+++|+|||.+..++       +|+|++||+|.|+++.+++||.|+.   +|..|+||+....
T Consensus        15 ~~~~~~~Alydy~a~~~~-------eLsf~~Gd~i~Vl~~~~~gWw~g~~---~g~~G~~P~~yv~   70 (83)
T 1neg_A           15 TGKELVLALYDYQEKSPR-------EVTMKKGDILTLLNSTNKDWWKVEV---NDRQGFVPAAYVK   70 (83)
T ss_dssp             --CCEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGEE
T ss_pred             CCceEEEEccccCCCCCC-------ccccCCCCEEEEEEecCCCEEEEEE---CCeEEEEEHHHEE
Confidence            345679999999998765       5999999999999999999999965   5789999998754

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.00  E-value=4.6e-10  Score=88.82  Aligned_cols=54  Identities=13%  Similarity=0.351  Sum_probs=46.0

Q ss_pred             EEEEeeccC-CCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          49 AVRTNVKYD-GSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        49 ~VRAlfdY~-~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      .++|+|||+ +..++       +|+|++||+|.|+++.+++||.|++..+ |+.|+||+....
T Consensus         4 ~~~alydy~~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~~~~-g~~G~~P~~yv~   58 (69)
T 1ruw_A            4 KFEAAYDFPGSGSSS-------ELPLKKGDIVFISRDEPSGWSLAKLLDG-SKEGWVPTAYMT   58 (69)
T ss_dssp             EEEESSCBCCCSCTT-------BCCBCTTCEEEEEEECTTSEEEEEETTS-SCEEEEEGGGEE
T ss_pred             EEEEccccCCCCCCC-------cccCCCCCEEEEEEecCCCeEEEEECCC-CCEEEEehHHeE
Confidence            478999996 76554       6999999999999999999999998532 789999998753

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.00  E-value=5.5e-10  Score=89.30  Aligned_cols=54  Identities=20%  Similarity=0.434  Sum_probs=46.9

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeec--CCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY--DSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~--d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ...++||+|||.+..++       +|+|++||+|.|+++.  +++||.|+.   +|+.|+||+...
T Consensus         8 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~W~~g~~---~g~~G~~P~~yv   63 (73)
T 2k9g_A            8 SKDYCKVIFPYEAQNDD-------ELTIKEGDIVTLINKDCIDVGWWEGEL---NGRRGVFPDNFV   63 (73)
T ss_dssp             SCEEEEECSCBCCSSTT-------BCCBCTTCEEEEEECCSSSTTEEEEEE---TTEEEEEEGGGE
T ss_pred             CccEEEECccCCCCCCC-------eeeECCCCEEEEEECCCCCCCEEEEEE---CCeEEEEchHHE
Confidence            35579999999998765       5999999999999985  899999997   579999998764

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=3.8e-10  Score=92.20  Aligned_cols=55  Identities=15%  Similarity=0.196  Sum_probs=46.6

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ..+++|+|||.+..++       +|+|++||+|+|++ .+++||.+++.. +++.|+||+....
T Consensus        17 ~~~~~Alydy~a~~~~-------eLs~~~Gd~i~v~~-~~~~Ww~~~~~~-~g~~G~~P~~yv~   71 (79)
T 2cud_A           17 SDFLAVLSDYPSPDIS-------PPIFRRGEKLRVIS-DEGGWWKAISLS-TGRESYIPGICVA   71 (79)
T ss_dssp             CCEEEESSCSSCTTTS-------CCSSCTTCEEEEEE-EETTEEEEEETT-TCCEEEEEGGGEE
T ss_pred             CeEEEEccCCCCCCCC-------cCCCCCCCEEEEEe-cCCCeEEEEECC-CCCEEEeeHHHeE
Confidence            3479999999998775       59999999999999 578999999864 3689999998653

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=2.7e-10  Score=92.78  Aligned_cols=58  Identities=21%  Similarity=0.471  Sum_probs=49.2

Q ss_pred             cCCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecC--CCceEEEEccCCCceeeecChhHH
Q psy6613          43 AKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYD--SNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        43 ~k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d--~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ..+...++||+|||.+..++       +|+|++||+|.|+++.+  ++||.|++   +++.|+||+....
T Consensus        13 ~~~~~~~~~al~dy~~~~~~-------eLsf~~Gd~i~v~~~~~~~~~Ww~g~~---~g~~G~~P~~yv~   72 (80)
T 2d8h_A           13 NLNQPIEVTALYSFEGQQPG-------DLNFQAGDRITVISKTDSHFDWWEGKL---RGQTGIFPANYVT   72 (80)
T ss_dssp             CCSSCEEEECSSCEECSSTT-------BCEECTTCEEEEEECCSCSSSEEEEEE---TTEEEEEEGGGCC
T ss_pred             CCCCCEEEEECccCCcCCCC-------eeeEcCCCEEEEeECcCCCCCeEEEEE---CCEEEEEchhHeE
Confidence            34456789999999998765       59999999999999975  89999998   4799999987653

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.00  E-value=4.8e-10  Score=88.32  Aligned_cols=53  Identities=15%  Similarity=0.360  Sum_probs=46.6

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..++||+|||.+..++       +|+|++||+|.|+++.+++||.++.   +++.|+||+...
T Consensus         7 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv   59 (68)
T 2dl3_A            7 GRPARAKFDFKAQTLK-------ELPLQKGDIVYIYKQIDQNWYEGEH---HGRVGIFPRTYI   59 (68)
T ss_dssp             SEEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSTTEEEEEC---SSCEEEEETTTE
T ss_pred             CcEEEECccCCCCCcC-------CccCCCCCEEEEeEecCCCEEEEEE---CCCEEEEchHHE
Confidence            4579999999998765       5999999999999999999999995   578999998764

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.00  E-value=3.3e-10  Score=91.39  Aligned_cols=55  Identities=18%  Similarity=0.449  Sum_probs=48.3

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ...++||+|||.+..++       +|+|++||+|+|+++.+++||.|++   +++.|+||+....
T Consensus         9 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~   63 (76)
T 1ujy_A            9 HQLIVKARFNFKQTNED-------ELSVCKGDIIYVTRVEEGGWWEGTL---NGRTGWFPSNYVR   63 (76)
T ss_dssp             CCEEEECCSCBCCSSTT-------SCCBCSSCCEEESSCCSSSCEEEEE---TTEEEEECTTTSE
T ss_pred             CCEEEEECccCCcCCCC-------cccCCCCCEEEEEEecCCCEEEEEE---CCCEEEechHHEE
Confidence            45689999999998765       5999999999999999999999997   5789999988654

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.00  E-value=4.3e-10  Score=84.90  Aligned_cols=50  Identities=24%  Similarity=0.422  Sum_probs=44.2

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecC-CCceEEEEccCCCceeeecChh
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYD-SNWWIGRLVKEGSECGFIPSPV  108 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d-~~WWqar~v~~~~~~GlIPS~~  108 (510)
                      .++|+|||.+..++       +|+|++||+|.|+++.+ ++||.|+.   +++.|+||+..
T Consensus         2 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~W~~g~~---~g~~G~~P~~y   52 (54)
T 2a28_A            2 AMEAIYAYEAQGDD-------EISIDPGDIITVIRGDDGSGWTYGEC---DGLKGLFPTSY   52 (54)
T ss_dssp             EEEBCSCBCCCSTT-------BCCBCTTCEEEEEECCCSSSEEEEEE---TTEEEEEEGGG
T ss_pred             EEEECccCCcCCCC-------CccCCCCCEEEEEEecCCCCEEEEEE---CCeEEEeeHHH
Confidence            37899999998765       59999999999999986 79999998   57899999875

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=7.1e-10  Score=87.71  Aligned_cols=56  Identities=14%  Similarity=0.331  Sum_probs=48.3

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ....+||+|||.+..++       +|+|++||+|+|+++.+++||.+++.. .++.|+||+...
T Consensus         6 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~gW~~g~~~~-~g~~G~~P~~yv   61 (70)
T 2ct3_A            6 SGTPYRAMYQYRPQNED-------ELELREGDRVDVMQQCDDGWFVGVSRR-TQKFGTFPGNYV   61 (70)
T ss_dssp             CCEEEEESSCBCCSSTT-------BCCBCTTEEEEEEEECSSSCEEEEESS-SCCEEEECTTTE
T ss_pred             CCcEEEECccCCcCCcC-------CccCCCCCEEEEEEECCCCEEEEEECC-CCCEEEechHHe
Confidence            35679999999998765       599999999999999999999999853 368999998764

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=98.99  E-value=4.7e-10  Score=89.44  Aligned_cols=53  Identities=17%  Similarity=0.369  Sum_probs=46.5

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      .+++|+|||.+..++       +|+|++||+|.|+++.+++||.++.   +++.|+||+....
T Consensus         6 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~   58 (73)
T 3thk_A            6 ELVLALYDYQEKSPR-------EVTMKKGDILTLLNSTNKDWWKVEV---NDRQGFVPAAYVK   58 (73)
T ss_dssp             CEEEECSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGEE
T ss_pred             EEEEECcCCCcCCCC-------ccCCCCCCEEEEEECCCCCeEEEEE---CCcEEEEehHHeE
Confidence            368999999998765       5999999999999999999999996   4689999988754

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=98.99  E-value=3.7e-10  Score=92.46  Aligned_cols=56  Identities=25%  Similarity=0.478  Sum_probs=48.4

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      .++||+|||.+..++       +|+|++||+|.|+++.+++||.|++.. +|+.|+||+.....
T Consensus         6 ~~~~Alydy~~~~~~-------eLs~~~Gd~i~vl~~~~~~Ww~g~~~~-~g~~G~~P~~yv~~   61 (79)
T 3cqt_A            6 TLFEALYDYEARTED-------DLSFHKGEKFQILNSSEGDWWEARSLT-TGETGYIPSIYLAP   61 (79)
T ss_dssp             CCEEESSCBCCCSTT-------BCCBCTTCEEEEEECTTSSEEEEEETT-TCCEEEEEGGGEEE
T ss_pred             cEEEECccCCCCCcC-------cCCCCCCCEEEEEEecCCCeEEEEECC-CCCEEEeehHHeEE
Confidence            468999999998764       699999999999999999999999864 46899999987643

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=98.99  E-value=3.7e-10  Score=90.89  Aligned_cols=55  Identities=22%  Similarity=0.369  Sum_probs=45.8

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecC-----CCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYD-----SNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d-----~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .++.||+|+|.++.+++      +|+|++||+|.|+++.+     ++||.|++.  +|+.|+||++..
T Consensus         7 ~~~~~aly~y~a~~~~d------ELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~--~G~~G~~PsnyV   66 (69)
T 1nm7_A            7 HHFARALYDFVPENPEM------EVALKKGDLMAILSKKDPLGRDSDWWKVRTK--NGNIGYIPYNYI   66 (69)
T ss_dssp             --CEEECSCCCCSSTTS------CCCCCTTCEEEECCSSSSSCCSSSCEEEEET--TTEEEEECGGGE
T ss_pred             eeEEEEEecccCCCCCC------ccCCCCCCEEEEEecCCCCCCCCCeeEEEeC--CCCEEEecHHHE
Confidence            46799999999987652      59999999999999976     499999984  478999999864

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=98.99  E-value=4.3e-10  Score=89.58  Aligned_cols=53  Identities=11%  Similarity=0.302  Sum_probs=46.7

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ++||+|+|.+..++       +|+|++||+|.|+++.+++||.|++.. +++.|+||+...
T Consensus         8 ~~~al~~y~~~~~~-------eLs~~~Gd~i~v~~~~~~gW~~g~~~~-~g~~G~fP~~yv   60 (71)
T 2fpf_A            8 THRAIFRFVPRHED-------ELELEVDDPLLVELQAEDYWYEAYNMR-TGARGVFPAYYA   60 (71)
T ss_dssp             CEEECSCBCCSSTT-------BCCBCTTCEEEEEEECTTSEEEEEETT-TTEEEEEEGGGE
T ss_pred             EEEECeeECccCCC-------cccCcCCcEEEEeEecCCCEEEEEECC-CCCEEEeehHHE
Confidence            58999999998765       599999999999999999999999754 478999998765

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=6e-10  Score=90.57  Aligned_cols=54  Identities=20%  Similarity=0.364  Sum_probs=47.1

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ...++||+|||.+..++       +|+|++||+|+|+++.+++||.|+.   +++.|+||+...
T Consensus        16 ~~~~~~al~dy~~~~~~-------eLsf~~Gd~i~v~~~~~~gWw~g~~---~g~~G~~P~~yv   69 (78)
T 2ed0_A           16 YLEKVVAIYDYTKDKED-------ELSFQEGAIIYVIKKNDDGWYEGVM---NGVTGLFPGNYV   69 (78)
T ss_dssp             CSEEEEECSCBCCSSTT-------BCCBCSSCEEEEEEECSSSEEEEEE---TTEEEEEETTSE
T ss_pred             cCEEEEECccCCccCcC-------cccccCCCEEEEEEeCCCCEEEEEE---CCcEEEeChHHE
Confidence            34579999999998764       6999999999999999999999996   578999998764

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=3.9e-10  Score=93.10  Aligned_cols=58  Identities=16%  Similarity=0.272  Sum_probs=49.4

Q ss_pred             CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      +...+++|+|||.+..++       +|+|++||+|.|+++.+++||.|+..  +|+.|+||+....+
T Consensus        17 ~~~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~~--~g~~G~~P~~yv~~   74 (85)
T 2yuq_A           17 PEETVVIALYDYQTNDPQ-------ELALRRNEEYCLLDSSEIHWWRVQDR--NGHEGYVPSSYLVE   74 (85)
T ss_dssp             SSSCEEEESSCCCCSCSS-------BCCCCBTEEEEEEECCSSSEEEEECS--SSCEEEEETTTCEE
T ss_pred             CCCeEEEECcCCCCCCCC-------cCCCCCCCEEEEEEecCCCeEEEEEC--CCCEEEEehHHeEE
Confidence            344679999999998765       59999999999999999999999863  47899999987643

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=98.99  E-value=4.8e-10  Score=86.78  Aligned_cols=54  Identities=20%  Similarity=0.404  Sum_probs=46.6

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..+||+|||.+..++       +|+|++||+|.|+++.+++||.|++.. +++.|+||+...
T Consensus         7 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~~~-~g~~G~~P~~yv   60 (64)
T 4f14_A            7 RTYRAMYDYSAQDED-------EVSFRDGDYIVNVQPIDDGWMYGTVQR-TGRTGMLPANYI   60 (64)
T ss_dssp             -CEEESSCBCCCSTT-------BCCBCTTCEEEEEEECSSSEEEEEETT-TTEEEEEEGGGE
T ss_pred             EEEEECeeeCCcCCC-------cCCCCCCCEEEEEEeCCCCeEEEEECC-CCCEEEEeHHHe
Confidence            458999999998765       599999999999999999999999863 468999998754

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=98.98  E-value=3.7e-10  Score=90.48  Aligned_cols=54  Identities=19%  Similarity=0.423  Sum_probs=47.3

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ..+++|+|||.+..++       +|+|++||+|+|+++.+++||.|++   +++.|+||+....
T Consensus         7 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~   60 (73)
T 2dbm_A            7 GPCCRALYDFEPENEG-------ELGFKEGDIITLTNQIDENWYEGML---HGHSGFFPINYVE   60 (73)
T ss_dssp             CCEEEESSCBCCCSTT-------CCCBCTTCEEECCBCSSSSEEEEEE---TTEEEEEESSSEE
T ss_pred             CCEEEEccccCCCCCC-------CccCCCCCEEEEEEecCCCEEEEEE---CCCEEEechHHEE
Confidence            3478999999998765       5999999999999999999999997   5789999987653

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=6.6e-10  Score=90.82  Aligned_cols=55  Identities=29%  Similarity=0.436  Sum_probs=48.0

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ...+||+|||.+..++       +|+|++||+|.|+++.+++||.+++   +++.|+||+....+
T Consensus         8 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~vl~~~~~gWw~g~~---~g~~G~~P~~yv~~   62 (80)
T 2ekh_A            8 ATSYMTCSAYQKVQDS-------EISFPAGVEVQVLEKQESGWWYVRF---GELEGWAPSHYLVL   62 (80)
T ss_dssp             CEEEEECSCBCCSSTT-------SCCBCTTCEEEEEEECTTSEEEEEE---TTEEEEEETTTEEC
T ss_pred             CCEEEECCCCCCCCCC-------ccCcCCCCEEEEEEeCCCCeEEEEE---CCCEEEEEhHHeEE
Confidence            4568899999998775       5999999999999999999999997   47899999987653

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=98.98  E-value=5.3e-10  Score=88.48  Aligned_cols=54  Identities=19%  Similarity=0.380  Sum_probs=47.2

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..-++||+|||.+..++       +|+|++||+|+|+++.+++||.+++   +++.|+||+...
T Consensus         7 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   60 (69)
T 2dil_A            7 GAQEYRALYDYTAQNPD-------ELDLSAGDILEVILEGEDGWWTVER---NGQRGFVPGSYL   60 (69)
T ss_dssp             CCCEEECCSCBCCSSSS-------SCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGC
T ss_pred             CCcEEEECccCCccCcC-------ccCCCCCCEEEEEECCCCCEEEEEE---CCCEEEEehHHe
Confidence            34478999999998765       5999999999999999999999998   478999998765

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=98.98  E-value=3.8e-10  Score=86.12  Aligned_cols=52  Identities=15%  Similarity=0.217  Sum_probs=45.1

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecC-CCceEEEEccCCCceeeecChh
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYD-SNWWIGRLVKEGSECGFIPSPV  108 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d-~~WWqar~v~~~~~~GlIPS~~  108 (510)
                      .+||+|||.+..++       +|+|++||+|.|+++.+ ++||.+++.. +++.|+||++.
T Consensus         3 ~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~W~~g~~~~-~g~~G~~P~~y   55 (58)
T 1zuu_A            3 ENKVLYAYVQKDDD-------EITITPGDKISLVARDTGSGWTKINNDT-TGETGLVPTTY   55 (58)
T ss_dssp             CCEECSCBCCCSTT-------BCCBCTTCCEEEEECCSSSSEEEEEETT-TTEEEEEEGGG
T ss_pred             EEEEeeeECCcCCC-------cccCCCCCEEEEeEcCCCCCCEEEEECC-CCCEEEEEHHH
Confidence            47899999998765       69999999999999987 7999999853 46899999875

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=98.98  E-value=2e-10  Score=94.66  Aligned_cols=54  Identities=13%  Similarity=0.346  Sum_probs=47.5

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ...++||+|||.+..++       +|+|++||+|.|+++.+++||.|+.   +|..|+||+...
T Consensus        17 ~~~~~~Alydy~a~~~~-------eLsf~~Gd~I~Vl~~~~~gWw~g~~---~g~~G~fP~nyV   70 (79)
T 1z9q_A           17 AAPRAEALFDFTGNSKL-------ELNFKAGDVIFLLSRINKDWLEGTV---RGATGIFPLSFV   70 (79)
T ss_dssp             SCCCEEESSCCCCSSTT-------BCCCCTTCCBCCCEESSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             CceEEEEcCccCCCCCC-------cccccCCCEEEEeEecCCCEEEEEE---CCeEEEecHHHE
Confidence            45579999999998765       5999999999999999999999997   478999998764

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=98.98  E-value=5e-10  Score=88.13  Aligned_cols=55  Identities=18%  Similarity=0.242  Sum_probs=45.9

Q ss_pred             eeEEEEeeccCC-CCCCCCCCCCccccccCCceEEEEee-cCCCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDG-SIDDDSPVHGYAVSFDIHEFLHIKEK-YDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~-~~D~~iPc~e~~LsF~~GDiL~V~~~-~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..+++|+|||.+ ..++       +|+|++||+|.|+++ .+++||.|++.+ .+..|+||+...
T Consensus         6 ~~~~~al~dy~a~~~~~-------eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~-~g~~G~~P~~yv   62 (67)
T 2kxc_A            6 KQKVKTIFPHTAGSNKT-------LLSFAQGDVITLLIPEEKDGWLYGEHDV-SKARGWFPSSYT   62 (67)
T ss_dssp             CCEEEESSCBCCSSCSS-------BCCBCTTCEEEESSSSCBTTEEEEEESS-SCCEEEEEGGGE
T ss_pred             CEEEEEeecCCCCCCCC-------CCcCCCCCEEEEeECCCCCCcEEEEECC-CCCEEEEehHHe
Confidence            457899999995 5543       699999999999996 889999999853 368999998754

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=98.98  E-value=6.6e-10  Score=87.42  Aligned_cols=56  Identities=14%  Similarity=0.245  Sum_probs=46.0

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEee-cCCCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK-YDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~-~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..++||+|||.+..++.      .|+|++||+|.|+.. .+++||.|++.. +++.|+||++..
T Consensus         7 ~~~~~al~dy~~~~~~e------~Lsf~~Gd~i~v~~~~~~~gW~~g~~~~-~g~~G~fP~~yv   63 (67)
T 3rnj_A            7 RMRVKAIFSHAAGDNST------LLSFKEGDLITLLVPEARDGWHYGESEK-TKMRGWFPFSYT   63 (67)
T ss_dssp             CCEEEESSCBCCCSCTT------BCCBCTTCEEEECSSSCBTTEEEEEETT-TCCEEEEEGGGE
T ss_pred             CeEEEEccccCCCCCCC------CccCCCCCEEEEeeccCCCCCEEEEECC-CCCEEEEEHHHe
Confidence            44799999999877542      499999999999965 688999999753 478999998753

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=2.6e-10  Score=90.96  Aligned_cols=55  Identities=18%  Similarity=0.308  Sum_probs=46.7

Q ss_pred             eeEEEEeeccCC-CCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDG-SIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~-~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ...+||+|||.+ ..++       +|+|++||+|.|+++.+++||.|++.. +++.|+||++..
T Consensus         7 ~~~~~Alydy~~~~~~~-------eLsf~~Gd~i~v~~~~~~~W~~g~~~~-~g~~G~~P~~yv   62 (71)
T 2gqi_A            7 GRRVRAILPYTKVPDTD-------EISFLKGDMFIVHNELEDGWMWVTNLR-TDEQGLIVEDLV   62 (71)
T ss_dssp             CCCEEESSCCCCCTTSS-------CCCCCTTCBCCCCEECSSSCEEEECTT-TCCEEEECTTSE
T ss_pred             CCEEEECcccCCCCCCC-------CCCCCCCCEEEEEEecCCCEEEEEECC-CCCEEEeeHHHE
Confidence            346899999999 6654       599999999999999999999999643 478999999764

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=98.97  E-value=4.6e-10  Score=89.71  Aligned_cols=55  Identities=25%  Similarity=0.425  Sum_probs=47.4

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..+++|+|||.+..++       +|+|++||+|.|+++. ++||.|++...+|+.|+||+...
T Consensus        11 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~-~~W~~g~~~~~~g~~G~~P~~yv   65 (74)
T 2m0y_A           11 EKYGVAFYNYDARGAD-------ELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYI   65 (74)
T ss_dssp             CSCEEECSEECCCSSS-------BCCEETTEEEEEEEBS-SSCEEEEESSCSSCCEEECGGGE
T ss_pred             CeEEEEceeeCCCCcC-------cccCCCCCEEEEEEcC-CCeEEEEECCCCCCEEEEehHHE
Confidence            4478999999998765       5999999999999995 78999999765679999998764

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.97  E-value=2.2e-10  Score=91.75  Aligned_cols=54  Identities=17%  Similarity=0.269  Sum_probs=46.1

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEe-ecCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKE-KYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~-~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ...++||+|||.+..++       +|+|++||+|+|++ ..+++||.|+.   +++.|+||+...
T Consensus         9 ~~~~~~alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~~Ww~g~~---~g~~G~~P~~yv   63 (72)
T 1ugv_A            9 PFRKAKALYACKAEHDS-------ELSFTAGTVFDNVHPSQEPGWLEGTL---NGKTGLIPENYV   63 (72)
T ss_dssp             SCCCEEESSCBCCCSSS-------BCCBCTTCEEBSCCBCSSTTEEEEES---SSCEEEEEGGGE
T ss_pred             CccEEEEccccCCcCCC-------EeCCcCCCEEEEEEecCCCCeEEEEE---CCcEEEecHHHE
Confidence            34579999999998765       59999999999998 47889999985   578999998764

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=5.4e-10  Score=88.17  Aligned_cols=53  Identities=23%  Similarity=0.451  Sum_probs=46.3

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ...++|+|||.+..++       +|+|++||+|.|+++.+++||.+++   +++.|+||+...
T Consensus         7 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   59 (68)
T 1x2p_A            7 GEEFVAIADYAATDET-------QLSFLRGEKILILRQTTADWWWGER---AGCCGYIPANHV   59 (68)
T ss_dssp             CCEEEESSCCCCSSTT-------BCCCCTTCEEEEEECCSSSEEEEEC---TTCCEEEESSSE
T ss_pred             CCEEEECceECCCCcC-------CcCCCCCCEEEEEEcCCCCEEEEEE---CCeEEEEehHHe
Confidence            3468999999998765       5999999999999999999999996   478999998764

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=5.5e-10  Score=90.85  Aligned_cols=54  Identities=24%  Similarity=0.497  Sum_probs=47.2

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ...++||+|||.+..++       +|+|++||+|+|+++.+++||.|+.   +++.|+||+...
T Consensus        16 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   69 (79)
T 1x69_A           16 LGITAVALYDYQAAGDD-------EISFDPDDIITNIEMIDDGWWRGVC---KGRYGLFPANYV   69 (79)
T ss_dssp             CCCCEEESSCCCCSSSS-------BCCCCTTCEEEEEEECSSSEEEEEE---TTEEEEEETTSE
T ss_pred             CCeEEEECccCCCCCCC-------CcCcCCCCEEEEeEecCCCeEEEEE---CCcEEEechHHE
Confidence            34579999999998764       5999999999999999999999996   579999998754

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.97  E-value=4.2e-10  Score=94.50  Aligned_cols=55  Identities=18%  Similarity=0.440  Sum_probs=47.3

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeec--CCCceEEEEccCCCceeeecChhHHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY--DSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~--d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ..++||+|||++..++       +|+|++||+|+|+++.  +++||.|+.   +|+.|+||+...+.
T Consensus         5 ~~~~~Alydy~a~~~~-------eLsf~~Gd~i~v~~~~~~~~gWw~g~~---~g~~G~~P~~yv~~   61 (93)
T 1uff_A            5 SSGYRALYPFEARNHD-------EMSFNSGDIIQVDEKTVGEPGWLYGSF---QGNFGWFPCNYVEK   61 (93)
T ss_dssp             CCCEEESSCBCCCSSS-------CCCBCTTCEEEECSSCCCSSSEEEEEE---TTEEEEEETTTEEE
T ss_pred             CEEEEECccCCCCCCC-------CcCCCCCCEEEEeEccCCCCCEEEEEE---CCCEEEechHHeEE
Confidence            4468999999998775       5999999999999986  789999996   47899999987644

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=98.97  E-value=6.7e-10  Score=92.55  Aligned_cols=59  Identities=20%  Similarity=0.463  Sum_probs=49.6

Q ss_pred             CCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEee--cCCCceEEEEccCCCceeeecChhHHH
Q psy6613          44 KNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK--YDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        44 k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~--~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      .+...++||+|||.+..++       +|+|++||+|+|+++  .+.+||.|++.  +++.|+||+.....
T Consensus        14 ~~~~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~--~g~~G~~P~~yv~~   74 (91)
T 1wx6_A           14 SRVLHVVQTLYPFSSVTEE-------ELNFEKGETMEVIEKPENDPEWWKCKNA--RGQVGLVPKNYVVV   74 (91)
T ss_dssp             CCCCEEEEESSCCCCSSSS-------BCCCCTTCEEEEEECCSSCTTEEEEECT--TCCEEEEEGGGEEE
T ss_pred             CCccEEEEEeecCCcCCCC-------cccCCCCCEEEEEECCCCCCCcEEEEeC--CCCEEEEchHHEEE
Confidence            3456689999999998765       599999999999999  68899999863  47899999987643

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=98.97  E-value=6.1e-10  Score=89.21  Aligned_cols=54  Identities=20%  Similarity=0.398  Sum_probs=46.4

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ..+++|+|||.+..++       +|+|++||+|.|+++ +++||.|+..  +++.|+||+....
T Consensus         7 ~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~-~~~Ww~g~~~--~g~~G~~P~~yv~   60 (72)
T 2jw4_A            7 EVVVVAKFDYVAQQEQ-------ELDIKKNERLWLLDD-SKSWWRVRNS--MNKTGFVPSNYVE   60 (72)
T ss_dssp             CEEEECSSCCCCSSTT-------SCCCCTTCEEEEEEC-SSSSEEEECT--TSCEEEECTTSCE
T ss_pred             CeEEEECcCCCcCCCC-------cccCCCCCEEEEEEC-CCCEEEEEEC--CCCEEEEEhhHEE
Confidence            4579999999998765       599999999999998 6799999975  4789999998653

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=6.8e-10  Score=90.22  Aligned_cols=56  Identities=21%  Similarity=0.400  Sum_probs=48.0

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecC-CCceEEEEccCCCceeeecChhHH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYD-SNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d-~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ...++||+|||.+..++       +|+|++||+|+|+++.+ ++||.+++.  .++.|+||+....
T Consensus        12 ~~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~Ww~g~~~--~g~~G~~P~~yv~   68 (78)
T 2dl5_A           12 YPLTCKVVYSYKASQPD-------ELTIEEHEVLEVIEDGDMEDWVKARNK--VGQVGYVPEKYLQ   68 (78)
T ss_dssp             SSEEEEECSCBCCCSTT-------BCCBCSSEEEEEEECCSSSSEEEEECT--TCCEEEEETTTSC
T ss_pred             CCcEEEEceeECCCCCC-------CCCCCCCCEEEEEeccCCCCcEEEEeC--CCCEEEEEhHHEE
Confidence            45679999999998765       59999999999999975 899999984  3789999997653

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=98.96  E-value=8.1e-10  Score=87.42  Aligned_cols=54  Identities=17%  Similarity=0.428  Sum_probs=46.3

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ..++||+|||.+..++       +|+|++||+|+|+++ +++||.++.  .+++.|+||+....
T Consensus         7 ~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~-~~~Ww~~~~--~~g~~G~~P~~yv~   60 (68)
T 1wxt_A            7 GLKMQVLYEFEARNPR-------ELTVVQGEKLEVLDH-SKRWWLVKN--EAGRSGYIPSNILE   60 (68)
T ss_dssp             CEEEEESSCBCCCSSS-------BCCBCTTCEEEEEEC-SSSEEEEEC--TTSCEEEEEGGGEE
T ss_pred             CeEEEECceECCCCcC-------cCCCCCCCEEEEEEc-CCCEEEEEE--CCCCEEEEEhHHcE
Confidence            4579999999998765       699999999999999 489999996  25789999987653

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.96  E-value=7.6e-10  Score=87.79  Aligned_cols=53  Identities=21%  Similarity=0.454  Sum_probs=46.1

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeec--CCCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY--DSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~--d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..++||+|||.+..++       +|+|++||+|+|+++.  +++||.|+.   +++.|+||+...
T Consensus         7 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~W~~g~~---~g~~G~~P~~yv   61 (70)
T 2da9_A            7 GDYCKVIFPYEAQNDD-------ELTIKEGDIVTLINKDCIDVGWWEGEL---NGRRGVFPDNFV   61 (70)
T ss_dssp             SEEEEECSCCCCSSTT-------BCCCCTTEEEEEEECCCSSTTEEEEEC---SSCEEEEEGGGE
T ss_pred             CcEEEECcCCCCCCcC-------EeeEcCCCEEEEEECCCCCCCeEEEEE---CCcEEEechHHe
Confidence            4578999999998765       6999999999999985  899999996   578999998764

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=98.96  E-value=5.3e-10  Score=85.89  Aligned_cols=53  Identities=30%  Similarity=0.469  Sum_probs=44.7

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecC-CCceEEEEccCCCceeeecChhH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYD-SNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d-~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..+||+|||.+..++       +|+|++||+|.|+++.+ ++||.++..  .++.|+||+...
T Consensus         4 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~W~~g~~~--~g~~G~~P~~yv   57 (60)
T 2x3w_D            4 VRVRALYDYDGQEQD-------ELSFKAGDELTKLGEEDEQGWCRGRLD--SGQLGLYPANYV   57 (60)
T ss_dssp             CEEEECSCBCCSSSS-------BCCBCTTCEEEECSCCCSSSEEEEECS--SCCEEEEEGGGE
T ss_pred             CEEEECcccCccCCC-------cccCCCCCEEEEEEccCCCCceEEEeC--CCCEEEecHHHE
Confidence            468999999998764       69999999999999854 599999863  478999998754

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.96  E-value=7.4e-10  Score=90.51  Aligned_cols=54  Identities=22%  Similarity=0.361  Sum_probs=46.8

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEee--cCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK--YDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~--~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ....+||+|||.+..++       +|+|++||+|+|+++  .+++||.|+.   +++.|+||+...
T Consensus        16 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~Ww~g~~---~g~~G~~P~~yv   71 (81)
T 1x43_A           16 NNRKARVLYDYDAANST-------ELSLLADEVITVFSVVGMDSDWLMGER---GNQKGKVPITYL   71 (81)
T ss_dssp             CCEEEEESSCCCCSSTT-------BCCCCTTCEEEEECCTTCCTTEEEEEE---TTEEEEEEGGGE
T ss_pred             CCeEEEEcccCCCCCCC-------cCCCCCCCEEEEEEcCCCCCCcEEEEE---CCCEEEEehHHE
Confidence            45679999999998775       599999999999999  4689999986   578999998764

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=5.5e-10  Score=89.55  Aligned_cols=55  Identities=16%  Similarity=0.337  Sum_probs=46.7

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeec--CCCceEEEEccCCCceeeecChhHH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY--DSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~--d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ...++||+|||.+..++       +|+|++||+|+|+++.  |++||.++.   +++.|+||+....
T Consensus         6 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~Ww~g~~---~g~~G~~P~~yv~   62 (73)
T 2dm1_A            6 SGGTAVARYNFAARDMR-------ELSLREGDVVRIYSRIGGDQGWWKGET---NGRIGWFPSTYVE   62 (73)
T ss_dssp             SSSEEEESSCBCCCSTT-------BCCBCTTCEEECCBSSSSSSSCEEEEE---TTEEEEECSSSEE
T ss_pred             CCCEEEECccCCcCCCC-------cCCCCCCCEEEEEEecCCCCCeEEEEE---CCeEEEeehHHEE
Confidence            34579999999998764       5999999999999987  559999997   5799999997654

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=98.96  E-value=8e-10  Score=85.38  Aligned_cols=52  Identities=17%  Similarity=0.210  Sum_probs=44.4

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEee-cCCCceEEEEccCCCceeeecChhH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK-YDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~-~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .+++|+|||.+..++       +|+|++||+|.|+++ .+++||.++.   +++.|+||+...
T Consensus         6 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~W~~~~~---~g~~G~~P~~yv   58 (63)
T 3eg3_A            6 NLFVALYDFVASGDN-------TLSITKGEKLRVLGYNHNGEWCEAQT---KNGQGWVPSAYI   58 (63)
T ss_dssp             TEEEESSCBCCCSSS-------BCCBCTTCEEEEEEECTTSSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEEcceECCCCCC-------ccCCCCCCEEEEEEeCCCCCeEEEEE---CCCeEEEehHHe
Confidence            368999999998765       599999999999995 5677999998   468899998764

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=98.96  E-value=6.1e-10  Score=87.74  Aligned_cols=56  Identities=18%  Similarity=0.330  Sum_probs=47.3

Q ss_pred             CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      +....++|+|||.+..++       +|+|++||+|.|+++.+++||.|++.  +++.|+||+...
T Consensus         8 ~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~--~g~~G~~P~~yv   63 (68)
T 1s1n_A            8 STGEEYIAVGDFTAQQVG-------DLTFKKGEILLVIEKKPDGWWIAKDA--KGNEGLVPRTYL   63 (68)
T ss_dssp             -CCEEEEECSCBCCSSSS-------CCCBCSSEEEEECSCCSSSEEEEECS--SSCEEEEESTTE
T ss_pred             CCCCEEEEcccCCCCCCC-------cCCCCCCCEEEEEEcCCCCeEEEEEC--CCCEEEEehHHe
Confidence            334568899999998765       59999999999999999999999963  478999998754

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=8.2e-10  Score=91.96  Aligned_cols=56  Identities=21%  Similarity=0.434  Sum_probs=49.1

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ..+.++|+|||.+..++       +|+|++||+|+|+++.+++||.+++   +++.|+||+....+
T Consensus        16 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~gWw~g~~---~g~~G~~P~~yv~~   71 (88)
T 2cub_A           16 LNMPAYVKFNYMAERED-------ELSLIKGTKVIVMEKCSDGWWRGSY---NGQVGWFPSNYVTE   71 (88)
T ss_dssp             CCEEEEESSCCCCCSTT-------BCCCCTTEEEEEEEECTTSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             CCCEEEEccccCCCCCC-------CcCCCCCCEEEEEEccCCCeEEEEE---CCcEEEEehHHEEE
Confidence            35679999999998765       5999999999999999999999998   57899999987643

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.95  E-value=7.3e-10  Score=89.05  Aligned_cols=54  Identities=19%  Similarity=0.540  Sum_probs=46.2

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ...++||+|||.+..++       +|+|++||+|+|+++ +++||.|++   +++.|+||+....
T Consensus         9 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~-~~~Ww~g~~---~g~~G~~P~~yv~   62 (74)
T 1j3t_A            9 ENLKAQALCSWTAKKDN-------HLNFSKHDIITVLEQ-QENWWFGEV---HGGRGWFPKSYVK   62 (74)
T ss_dssp             CCCEEEESSCBCCCSTT-------BCCBCTTCEEEEEEE-CSSEEEEES---TTCCCEEEGGGEE
T ss_pred             CCeEEEECCCCCCCCCC-------ccCCCCCCEEEEEec-CCCEEEEEE---CCcEEEEchHHeE
Confidence            45689999999998765       599999999999999 478999996   4789999987653

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=98.95  E-value=5.1e-10  Score=90.08  Aligned_cols=53  Identities=25%  Similarity=0.527  Sum_probs=45.8

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeec-CCCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY-DSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~-d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ...+||+|||.+..++       +|+|++||+|.|+++. |.+||.|+.   +++.|+||+...
T Consensus         9 ~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~Ww~g~~---~g~~G~~P~~yv   62 (74)
T 1gbq_A            9 SMEAIAKYDFKATADD-------ELSFKRGDILKVLNEECDQNWYKAEL---NGKDGFIPKNYI   62 (74)
T ss_dssp             -CEEEESSCBCCSSTT-------BCCBCTTCEEECCBCSSCSSEEEEEE---TTEEEEEEGGGE
T ss_pred             CeEEEECccCCCCCCC-------eeeEcCCCEEEEeEecCCCCEEEEEE---CCCEEEEehHhE
Confidence            4579999999998765       5999999999999987 679999996   578999999864

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.95  E-value=9.5e-10  Score=88.80  Aligned_cols=56  Identities=14%  Similarity=0.288  Sum_probs=47.6

Q ss_pred             CeeEEEEeeccCCC-CCCCCCCCCccccccCCceEEEEeec-CCCceEEEEccCCCceeeecChhHH
Q psy6613          46 VAFAVRTNVKYDGS-IDDDSPVHGYAVSFDIHEFLHIKEKY-DSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        46 ~~~~VRAlfdY~~~-~D~~iPc~e~~LsF~~GDiL~V~~~~-d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      +..++||+|||.+. .++       +|+|++||+|+|+++. +++||.|++.  +++.|+||+....
T Consensus         8 ~~~~~~al~dy~~~~~~~-------eLs~~~Gd~i~v~~~~~~~gW~~g~~~--~g~~G~~P~~yv~   65 (77)
T 2enm_A            8 MATKARVMYDFAAEPGNN-------ELTVTEGEIITVTNPNVGGGWLEGKNN--KGEQGLVPTDYVE   65 (77)
T ss_dssp             SCEEEEESSCCCCCTTSS-------BCCCCTTCEEEEEESCCSSSEEEEECT--TCCEEEEETTTEE
T ss_pred             CCcEEEECccCCCCCCCC-------eecCCCCCEEEEeEccCCCCeEEEEEC--CCCEEEeehHHeE
Confidence            45789999999998 543       6999999999999985 8999999964  4789999987653

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=98.95  E-value=8.2e-10  Score=91.39  Aligned_cols=57  Identities=25%  Similarity=0.356  Sum_probs=48.8

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ..+++|+|||.+..++       +|+|.+||+|.|+++.+++||.|++.. +|+.|+||++...+
T Consensus         6 ~~~~~Alydy~a~~~~-------eLsf~~Gd~i~vl~~~~~~Ww~g~~~~-~g~~G~~P~~yv~~   62 (84)
T 4ag1_C            6 VTLFVALYDYNATRWT-------DLSFHKGEKFQILEFGPGDWWEARSLT-TGETGYIPSNYVAP   62 (84)
T ss_dssp             CCEEEESSCBCCSBTT-------BCCBCTTCEEEEEECCSSSEEEEEETT-TCCEEEEEGGGEEE
T ss_pred             CEEEEEcccCCCCCCC-------cccccCCCEEEEEEecCCCeEEEEECC-CCCEEEEehHHeEE
Confidence            3478999999998764       599999999999999999999999863 46899999887643

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=98.94  E-value=3.6e-10  Score=95.55  Aligned_cols=58  Identities=17%  Similarity=0.420  Sum_probs=49.8

Q ss_pred             cCCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          43 AKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        43 ~k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      .+....++||+|||.+..++       +|+|++||+|.|+++.+++||.|++   +|+.|+||+....
T Consensus        14 ~~~~~~~~~Alydy~a~~~~-------eLsf~~Gd~i~V~~~~~~gWw~g~~---~g~~G~fPsnyV~   71 (92)
T 2o2o_A           14 GERRRRRCQVAFSYLPQNDD-------ELELKVGDIIEVVGEVEEGWWEGVL---NGKTGMFPSNFIK   71 (92)
T ss_dssp             SSCSSCEEEECSCBCCCSSS-------CCCBCSSCEEECCCGGGSSCBCCEE---TTEECCBCSSSEE
T ss_pred             CCCCCeEEEEccccCCCCCc-------cccccCCCEEEEeEecCCCEEEEEE---CCeEEEeehHHEE
Confidence            44455689999999998765       5999999999999999999999997   5799999997653

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=1.1e-09  Score=89.03  Aligned_cols=54  Identities=20%  Similarity=0.488  Sum_probs=47.4

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ..+++|+|||.+..++       +|+|++||+|+|+++.+++||.++.   +++.|+||+....
T Consensus         7 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~   60 (79)
T 2yun_A            7 GRLCKALYSFQARQDD-------ELNLEKGDIVIIHEKKEEGWWFGSL---NGKKGHFPAAYVE   60 (79)
T ss_dssp             SEEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSSSCEEEES---SSCEEEECSTTEE
T ss_pred             CCEEEECccCCcCCCC-------CcCCCCCCEEEEEEcCCCCEEEEEE---CCCEEEEEhHHeE
Confidence            4579999999998765       5999999999999999999999995   5789999998764

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.94  E-value=4.7e-10  Score=89.16  Aligned_cols=53  Identities=23%  Similarity=0.441  Sum_probs=45.5

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ....+||+|||.+..++       +|+|++||+|+|+++ |++||.|+.   +++.|+||+...
T Consensus         7 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~-~~~Ww~g~~---~g~~G~~P~~yv   59 (69)
T 1uhf_A            7 GGEEYIALYPYSSVEPG-------DLTFTEGEEILVTQK-DGEWWTGSI---GDRSGIFPSNYV   59 (69)
T ss_dssp             CSEEEECSSCBCCSSSS-------BCCBCTTCEEEECEE-ETTEEEECS---TTCCEEECGGGC
T ss_pred             CCCEEEEeeeECCCCcC-------ccCCCCCCEEEEEEe-CCCEEEEEe---CCcEEEEchHHe
Confidence            34568999999998765       599999999999999 889999985   578999999765

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=98.94  E-value=8.2e-10  Score=87.49  Aligned_cols=54  Identities=17%  Similarity=0.338  Sum_probs=46.3

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ..+++|+|||.+..++       +|+|++||+|.|+++. ++||.++..  +++.|+||++...
T Consensus         8 ~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~-~~Ww~~~~~--~g~~G~~P~~yv~   61 (68)
T 2k2m_A            8 LKWVLCNYDFQARNSS-------ELSVKQRDVLEVLDDS-RKWWKVRDP--AGQEGYVPYNILT   61 (68)
T ss_dssp             CCEEEESSCBCCCSSS-------BCCBCTTCEEEEEECS-SSEEEEECT--TSCCEEEEGGGEE
T ss_pred             CEEEEECccCCCCCCC-------cccCCCCCEEEEEEcC-CCeEEEEeC--CCCEEEEEhhhEE
Confidence            4579999999998765       5999999999999985 899999874  4789999998653

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=98.94  E-value=7.2e-10  Score=88.39  Aligned_cols=55  Identities=18%  Similarity=0.249  Sum_probs=46.1

Q ss_pred             eeEEEEeeccCC-CCCCCCCCCCccccccCCceEEEEee-cCCCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDG-SIDDDSPVHGYAVSFDIHEFLHIKEK-YDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~-~~D~~iPc~e~~LsF~~GDiL~V~~~-~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..++||+|||.+ ..++       +|+|++||+|+|+++ .+++||.|++.+ .+..|+||+...
T Consensus         7 ~~~~~al~dy~a~~~~~-------eLs~~~Gd~i~v~~~~~~~gWw~g~~~~-~g~~G~fP~~yv   63 (72)
T 1spk_A            7 GQKVKTIFPHTAGNNKT-------LLSFAQGDVLTLLIPEEKDGWLYGEHDT-TKARGWFPSSYT   63 (72)
T ss_dssp             SCEEECSSCBCCSSCSS-------BCCBCTTCEEEECCSSCBTTEEEEEETT-TCCEEEEEGGGC
T ss_pred             ceEEEEeeeeCCCCCCC-------CCcCCCCCEEEEeEccCCCCcEEEEECC-CCCEEEEehHHe
Confidence            457999999995 5543       699999999999998 889999999853 368999998764

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=98.94  E-value=8.5e-10  Score=92.69  Aligned_cols=54  Identities=19%  Similarity=0.433  Sum_probs=46.7

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeec-----CCCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY-----DSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~-----d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..++||+|||.+..++       +|+|++||+|.|+++.     +++||.|++.  +|+.|+||+...
T Consensus        29 ~~~~~Alydy~a~~~~-------ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~--~g~~G~fP~nyV   87 (89)
T 2rf0_A           29 GPVWTAVFDYEAAGDE-------ELTLRRGDRVQVLSQDCAVSGDEGWWTGQLP--SGRVGVFPSNYV   87 (89)
T ss_dssp             CCEEEECSCBCCSSTT-------BCCBCTTCEEEEEECCHHHHSSTTEEEEECT--TCCEEEEEGGGE
T ss_pred             CcEEEECCccCCCCCC-------ccccCCCCEEEEEeccCCcccCCCEEEEEEC--CCCEEEEcHHHC
Confidence            4478999999998775       5999999999999995     8999999985  478999998753

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=1.3e-09  Score=86.53  Aligned_cols=57  Identities=18%  Similarity=0.227  Sum_probs=47.0

Q ss_pred             CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCC-CceEEEEccCCCceeeecChhHH
Q psy6613          45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDS-NWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~-~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      |...++||+|||.+..++       +|+|++||+|.|++..+. +||.+++.  .++.|+||+...+
T Consensus         5 p~~~~~~alydy~~~~~~-------eLs~~~Gd~i~vl~~~~~~gW~~~~~~--~g~~G~~P~~yv~   62 (70)
T 2ct4_A            5 SSGGHCVAIYHFEGSSEG-------TISMAEGEDLSLMEEDKGDGWTRVRRK--EGGEGYVPTSYLR   62 (70)
T ss_dssp             CSSCEEEESSCBCCCSTT-------CCCBCTTCEEEEEECCSSSCEEEEECS--SSCEEEEEGGGEE
T ss_pred             CcCCEEEEcccCCCCCCC-------cCCCCCCCEEEEEeccCCCCeEEEEeC--CCCEEEEEhHHeE
Confidence            344579999999998765       599999999999998764 59999974  4789999998653

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=98.93  E-value=7.5e-10  Score=87.55  Aligned_cols=55  Identities=16%  Similarity=0.260  Sum_probs=47.2

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..+++|+|||.+..++       +|+|++||+|+|+++.+++||.|++.. +++.|+||+...
T Consensus         7 ~~~~~al~~y~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~~-~g~~G~~P~~yv   61 (70)
T 2cuc_A            7 GNMFVALHTYSAHRPE-------ELDLQKGEGIRVLGKYQDGWLKGLSLL-TGRTGIFPSDYV   61 (70)
T ss_dssp             SCCEECCSCBCCCSTT-------BCCBCTTCEEEEEEEEETTEEEEEETT-TCCEEEEEGGGC
T ss_pred             CcEEEECeeECcCCCC-------cCCCCCCCEEEEEEecCCCeEEEEECC-CCCEEEEchHHe
Confidence            3468999999998765       599999999999999999999999653 468999998764

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.93  E-value=6.5e-10  Score=90.43  Aligned_cols=54  Identities=19%  Similarity=0.381  Sum_probs=46.2

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecC----CCceEEEEccCCCceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYD----SNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d----~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ..++||+|||.+..++       +|+|++||+|+|+++.|    ++||.++.   +++.|+||+....
T Consensus        13 ~~~~~Alydy~~~~~~-------eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~---~g~~G~~P~~yv~   70 (79)
T 1uhc_A           13 NQVYFAVYTFKARNPN-------ELSVSANQKLKILEFKDVTGNTEWWLAEV---NGKKGYVPSNYIR   70 (79)
T ss_dssp             SCCEEESSCBCCCSSS-------BCCBCTTCEEEEEESCCTTSCTTEEEEES---SSCEEEEEGGGEE
T ss_pred             CeEEEECccCCCCCCC-------ccCCCCCCEEEEEECCCCCCCCCeEEEEe---CCCEEEEchHHeE
Confidence            3468999999998765       59999999999999876    89999984   5789999998653

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=98.93  E-value=4.8e-10  Score=89.90  Aligned_cols=51  Identities=16%  Similarity=0.384  Sum_probs=44.0

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      .+||+|||.+ .++       +|+|++||+|.|+++.+++||.|+.   +|+.|+||++...
T Consensus         2 ~a~alydy~~-~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~   52 (73)
T 2kxd_A            2 GAPPLPPYSA-GGR-------EVTMKKGDILTLLNSTNKDWWKVEV---NDRQGFVPAAYVK   52 (73)
T ss_dssp             CCCCCCSSCC-CSC-------CCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGEE
T ss_pred             eEEEeeeeCC-CCC-------EeeEcCCCEEEEEEecCCCEEEEEE---CCCEEEEehHHeE
Confidence            3689999997 433       5999999999999999999999985   5789999998764

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=8e-10  Score=87.78  Aligned_cols=55  Identities=18%  Similarity=0.295  Sum_probs=47.7

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ..-.++|+|||.+..++       +|+|++||+|.|+++.+++||.+++.   ++.|+||+....
T Consensus         7 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~---g~~G~~P~~yv~   61 (71)
T 2dnu_A            7 GEEKYVTVQPYTSQSKD-------EIGFEKGVTVEVIRKNLEGWWYIRYL---GKEGWAPASYLK   61 (71)
T ss_dssp             CSEEEECSSCBCCSSTT-------BCCBCTTCEEEECCCCSSSEEEEEET---TEEEEEEGGGCE
T ss_pred             CCCEEEECCccCCCCCC-------CCcCCCCCEEEEeECCCCCeEEEEEC---CcEEEEEHHHeE
Confidence            34568999999998765       59999999999999999999999984   789999988754

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=1.3e-09  Score=89.44  Aligned_cols=56  Identities=13%  Similarity=0.212  Sum_probs=47.0

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCC-CceEEEEccCCCceeeecChhHHH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDS-NWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~-~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ..++|+|||.+..++       +|+|++||+|+|+++.++ +||.|++.. .++.|+||++..++
T Consensus        18 ~~~~Alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~-~g~~G~~P~~yv~~   74 (81)
T 1x6g_A           18 TQCITKCEHTRPKPG-------ELAFRKGDVVTILEACENKSWYRVKHHT-SGQEGLLAAGALRE   74 (81)
T ss_dssp             CEEEESSCBSSCCTT-------CCCBCTTCEEEEEECCCSSSEEEEEETT-TCCEEEEEGGGEEE
T ss_pred             CEEEECCCCCcCCCC-------CCCCCCCCEEEEEeccCCCCeEEEEeCC-CCCEEEEehHHEEE
Confidence            468899999998775       499999999999998766 999999742 46899999987643

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=6e-10  Score=92.93  Aligned_cols=57  Identities=19%  Similarity=0.383  Sum_probs=48.5

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ...++|+|||.+..++       +|+|++||+|+|+++.+++||.|++.. .++.|+||+.....
T Consensus        17 ~~~~~alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~~~-~g~~G~fP~~yv~~   73 (90)
T 2yup_A           17 YGEAVAQYTFKGDLEV-------ELSFRKGEHICLIRKVNENWYEGRITG-TGRQGIFPASYVQV   73 (90)
T ss_dssp             SEEEEECSCCCCCSSS-------BCCCCTTCEEEESSCCCSSEEEEECTT-TCCEEEEEGGGEEE
T ss_pred             ceEEEEeecCCcCCcC-------cCCCCCCCEEEEEEEcCCCeEEEEECC-CCCEEEEehHHeEE
Confidence            4568999999998765       599999999999999999999999853 26899999987643

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=98.93  E-value=8e-10  Score=89.72  Aligned_cols=56  Identities=20%  Similarity=0.334  Sum_probs=47.4

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCC-----CceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDS-----NWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~-----~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ...+++|+|||.+..++      .+|+|++||+|+|+++.+.     +||.|++.  +|+.|+||+...
T Consensus        13 ~~~~~~alydy~~~~~~------~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~--~g~~G~~P~~yv   73 (80)
T 2v1r_A           13 KLEFARALYDFVPENPE------MEVALKKGDLMAILSKKDPLGRDSDWWKVRTK--NGNIGYIPYNYI   73 (80)
T ss_dssp             GCEEEEESSCBCCSSTT------TBCCBCTTCEEEEEEEECTTSCEEEEEEEECT--TSCEEEEEGGGE
T ss_pred             cCEEEEECccCCCCCCC------CEecCCCCCEEEEEECCCCCCCCCCcEEEEeC--CCCeEEEEHHHe
Confidence            34679999999998764      1599999999999999876     99999973  578999999764

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=98.92  E-value=4.5e-10  Score=93.14  Aligned_cols=54  Identities=20%  Similarity=0.416  Sum_probs=46.4

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ..+++|+|||.+..++       +|+|++||+|.|+++ +++||.|+..  +|+.|+||+....
T Consensus        31 ~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~-~~~Ww~g~~~--~g~~G~~P~~yv~   84 (86)
T 2jxb_A           31 EVIVIAKWDYTAQQDQ-------ELDIKKNERLWLLDD-SKTWWRVRNA--ANRTGYVPSNYVE   84 (86)
T ss_dssp             CEEEEESSCCCCCSSS-------BCCCCTTEEEEEEEC-CSSEEEEECT--TSCEEEEEGGGBC
T ss_pred             ceEEEECccCCCCCCC-------EeccCCCCEEEEEec-CCCeEEEEEC--CCCEEEeehHHEE
Confidence            3579999999998765       599999999999998 6799999964  4789999998653

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=98.92  E-value=3e-10  Score=89.65  Aligned_cols=52  Identities=19%  Similarity=0.486  Sum_probs=45.7

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .++||+|||.+..++       +|+|++||+|+|+++.+++||.|+.   +++.|+||+...
T Consensus         8 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   59 (68)
T 1wi7_A            8 RRCQVAFSYLPQNDD-------ELELKVGDIIEVVGEVEEGWWEGVL---NGKTGMFPSNFI   59 (68)
T ss_dssp             CCEEESSCBCCSSTT-------BCCBCTTCEECCCEEEETTEEEECS---TTCCEEEETTSE
T ss_pred             CEEEECccCCcCCCC-------CccCcCCCEEEEEEcCCCCeEEEEE---CCcEEEEchHHE
Confidence            468999999998765       6999999999999998999999985   578999998754

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=98.92  E-value=3.4e-10  Score=89.08  Aligned_cols=56  Identities=20%  Similarity=0.243  Sum_probs=47.8

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ...+++|+|||.+..++       +|+|++||+|.|+++.+++||.++..  +++.|+||+....
T Consensus         7 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~--~g~~G~~P~~yv~   62 (67)
T 1aww_A            7 ELKKVVALYDYMPMNAN-------DLQLRKGDEYFILEESNLPWWRARDK--NGQEGYIPSNYVT   62 (67)
T ss_dssp             CCCEEEBSSCCCCSSSS-------SCCCCSSCEEECCCCCSSSEECCBCT--TSCBCCEETTTBC
T ss_pred             CCeEEEECccCCCCCCC-------CccCCCCCEEEEEEccCCCcEEEEEC--CCCEEEEchHhEE
Confidence            34578999999998765       59999999999999999999999864  4789999998653

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=98.91  E-value=1.3e-09  Score=90.96  Aligned_cols=57  Identities=19%  Similarity=0.328  Sum_probs=48.2

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCC-----CceEEEEccCCCceeeecChhHH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDS-----NWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~-----~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ...+++|+|||.+..++      .+|+|++||+|.|+++.+.     +||.|++  .+|+.|+||+....
T Consensus        13 ~~~~~~alydy~~~~~~------~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~--~~g~~G~~P~~yv~   74 (92)
T 1jqq_A           13 KLEFARALYDFVPENPE------MEVALKKGDLMAILSKKDPLGRDSDWWKVRT--KNGNIGYIPYNYIE   74 (92)
T ss_dssp             TCEEEEESSBBCCSSTT------TBCCBCTTCEEEEEEEECTTSCEEEEEEEEE--TTSCEEEEEGGGEE
T ss_pred             cCEEEEECccCCCCCCC------CCcCCCCCCEEEEEECCCCCCCCCCCeEEEe--CCCCEEEEehHHeE
Confidence            45679999999998764      1599999999999999876     9999998  35789999998754

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.91  E-value=1.5e-09  Score=88.44  Aligned_cols=55  Identities=15%  Similarity=0.344  Sum_probs=47.5

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ....+||+|||.+..++       +|+|++||+|+|+++ +++||.|++.. +++.|+||+...
T Consensus        16 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~-~~gW~~g~~~~-~g~~G~fP~~yv   70 (79)
T 1x6b_A           16 DLPQVEITKAFFAKQAD-------EVTLQQADVVLVLQQ-EDGWLYGERLR-DGETGWFPEDFA   70 (79)
T ss_dssp             SCCEEEESSCCCCCSSS-------BCCCCTTEEEEEEEE-ETTEEEEEETT-TCCEEEECGGGC
T ss_pred             CCCEEEECeeECCCCcC-------CcCCCCCCEEEEEEe-CCCEEEEEECC-CCCEEEEchHHE
Confidence            34579999999998764       599999999999999 99999999853 468999998764

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.91  E-value=8.2e-10  Score=87.59  Aligned_cols=54  Identities=20%  Similarity=0.380  Sum_probs=46.7

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      .-.+||+|||.+..++       +|+|++||+|+|+++.+++||.+++   .++.|+||+....
T Consensus         8 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~   61 (70)
T 2ega_A            8 LEQYVVVSNYKKQENS-------ELSLQAGEVVDVIEKNESGWWFVST---SEEQGWVPATYLE   61 (70)
T ss_dssp             CBCEECCSCCCCCSSS-------SCCCCTTCBCEEEEECTTSEEEEEC---SSCEEEEEGGGCE
T ss_pred             CcEEEECceECCCCCC-------cccCCCCCEEEEEEccCCCeEEEEE---CCCEEEEehHHcE
Confidence            4458999999998765       5999999999999999999999986   4689999987653

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=98.90  E-value=1.4e-09  Score=95.92  Aligned_cols=55  Identities=22%  Similarity=0.375  Sum_probs=47.8

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..+++|+|||++..++       +|+|++||+|+|+++. ++||.|++..++|+.|+||+...
T Consensus        59 ~~~~~Alydy~a~~~~-------eLsf~~Gd~i~vl~~~-~gWw~g~~~~~~g~~G~fP~nyV  113 (119)
T 2rqr_A           59 ERHGVAIYNFQGSGAP-------QLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFI  113 (119)
T ss_dssp             CEEEEBCSCBCCCSTT-------BCCBCTTCEEEEEEEE-TTEEEEEESSCTTCEEEEEGGGB
T ss_pred             ceEEEEccccCCCCCC-------cccCcCCCEEEEEEcC-CCEEEEEECCCCCCEEEeChhHE
Confidence            4679999999998775       5999999999999986 59999999764679999999764

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=98.90  E-value=1.9e-09  Score=92.33  Aligned_cols=57  Identities=21%  Similarity=0.461  Sum_probs=49.2

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ..++||+|||.+..++       +|+|++||+|+|+++.+++||.|++.. +++.|+||+....+
T Consensus        27 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~~-~g~~G~~P~~yv~~   83 (109)
T 2yt6_A           27 VTIFVALYDYEARTTE-------DLSFKKGERFQIINNTEGDWWEARSIA-TGKSGYIPSNYVVP   83 (109)
T ss_dssp             CCEEEESSCCCCSSTT-------SCCCCTTCEEEEEECSCTTCEEEEESS-SCCEEEECTTTEEE
T ss_pred             CEEEEECccCCCCCCC-------ccCCCCCCEEEEEEccCCCcEEEEECC-CCCEEEechHHcEE
Confidence            4679999999998765       599999999999999999999999853 46899999987643

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=98.90  E-value=1.7e-09  Score=94.19  Aligned_cols=58  Identities=14%  Similarity=0.201  Sum_probs=47.0

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEee-c--CCCceEEEEccC-----CCceeeecChhHHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK-Y--DSNWWIGRLVKE-----GSECGFIPSPVKLE  111 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~-~--d~~WWqar~v~~-----~~~~GlIPS~~~~E  111 (510)
                      ...++|+|||.+..++       +|+|++||+|.|+++ .  +++||.|+..++     .|+.|+||++...+
T Consensus        22 ~~~~~Alydy~a~~~~-------ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~   87 (108)
T 1i1j_A           22 ISMAVALQDYMAPDCR-------FLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVRE   87 (108)
T ss_dssp             SEEEEESSCBCCSSTT-------BCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEE
T ss_pred             eeEEEECCccCCCCCC-------ccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEE
Confidence            4569999999999765       699999999999998 2  335999998532     26899999987643

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=98.89  E-value=6.9e-11  Score=95.78  Aligned_cols=55  Identities=15%  Similarity=0.268  Sum_probs=47.5

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ..+++|+|||.+..++       +|+|++||+|.|+++.+++||.|+.  .+|+.|+||++...
T Consensus        20 ~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~--~~g~~G~~P~~yv~   74 (77)
T 1awj_A           20 ETLVIALYDYQTNDPQ-------ELALRCDEEYYLLDSSEIHWWRVQD--KNGHEGYAPSSYLV   74 (77)
T ss_dssp             SSCCCCCCCBCCCCTT-------SCCBCSSSCCSCCCTTSSSBCCCCC--SSSCCCCCBSTTCC
T ss_pred             ceEEEECccCCCCCcC-------CcCCCCCCEEEEEEecCCCCEEEEE--CCCCEEEEehHHEE
Confidence            3568999999998775       5999999999999999999999986  35789999998654

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=98.88  E-value=2e-09  Score=89.47  Aligned_cols=55  Identities=24%  Similarity=0.414  Sum_probs=46.6

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      .+++|+|||.+..++       +|+|++||+|.|++. +++||.|+... +|+.|+||+....+
T Consensus         4 ~~~~Alydy~~~~~~-------eLs~~~Gd~i~v~~~-~~~Ww~g~~~~-~g~~G~~P~~yv~~   58 (90)
T 3reb_B            4 IIVVALYDYVSWSPD-------DLSFQKGDQMVVLEE-SGEWWKARSLA-TRKEGYIPSNYVAR   58 (90)
T ss_dssp             CEEEESSCBCCSSTT-------BCCBCTTCEEEEEEC-SSSEEEEEETT-TCCEEEEEGGGEEE
T ss_pred             EEEEECCccCcCCcC-------cCCCCCCCEEEEEEe-CCCEEEEEECC-CCCEEEEehhheEE
Confidence            468999999998765       599999999999998 57899999854 46899999887643

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=1.2e-09  Score=86.49  Aligned_cols=54  Identities=19%  Similarity=0.330  Sum_probs=45.8

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ..++||+|||.+..++       +|+|++||+|+|+++. ++||.++..  +++.|+||+....
T Consensus         7 ~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~-~~Ww~~~~~--~g~~G~~P~~yv~   60 (68)
T 1wxb_A            7 GKYVKILYDFTARNAN-------ELSVLKDEVLEVLEDG-RQWWKLRSR--SGQAGYVPCNILG   60 (68)
T ss_dssp             CCCEECSSCBCCSSSS-------BCCBCTTCEEEEEECS-SSEEEEECT--TSCEEEEETTTCC
T ss_pred             CEEEEECccCCCCCCC-------ccCCCCCCEEEEEEcC-CCEEEEEEC--CCCEEEEEHHHeE
Confidence            3468999999998765       6999999999999984 899999973  4789999997653

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=98.88  E-value=2.9e-09  Score=87.50  Aligned_cols=54  Identities=22%  Similarity=0.446  Sum_probs=46.7

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..+++|+|||.+..++       +|+|++||+|.|+++. ++||.|++.. +++.|+||+...
T Consensus        25 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~-~~Ww~g~~~~-~g~~G~~P~~yv   78 (86)
T 2oi3_A           25 DIIVVALYDYEAIHHE-------DLSFQKGDQMVVLEES-GEWWKARSLA-TRKEGYIPSNYV   78 (86)
T ss_dssp             SEEEEESSCCCCSSSS-------CCCCCTTCEEEEEEES-SSEEEEEETT-TCCEEEEEGGGE
T ss_pred             CcEEEECccCCCCCCC-------cCcCCCCCEEEEEEcC-CCeEEEEECC-CCCEEEEehHHc
Confidence            4579999999998765       5999999999999998 5999999864 468999998764

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=98.86  E-value=9.5e-10  Score=96.60  Aligned_cols=57  Identities=16%  Similarity=0.352  Sum_probs=48.0

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEe-----ecCCCceEEEEccC-------CCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKE-----KYDSNWWIGRLVKE-------GSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~-----~~d~~WWqar~v~~-------~~~~GlIPS~~~  109 (510)
                      ...++||+|||.+..++       +|+|++||+|.|++     ..+++||.|++.++       +++.|+||+...
T Consensus        43 ~~~~~~Alydy~a~~~d-------ELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV  111 (115)
T 1bb9_A           43 FMFKVQAQHDYTATDTD-------ELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFT  111 (115)
T ss_dssp             CCEEEEESSCBCCSSTT-------BCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGE
T ss_pred             cceEEEECCccCCCCCC-------ccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHE
Confidence            45679999999998775       59999999999999     78899999998632       257999998754

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.86  E-value=1e-09  Score=92.83  Aligned_cols=56  Identities=23%  Similarity=0.500  Sum_probs=48.3

Q ss_pred             CCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          44 KNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        44 k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .+...+++|+|||.+..++       +|+|++||+|+|+++.+++||.++.   +++.|+||+...
T Consensus        31 ~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   86 (98)
T 1udl_A           31 FHPVCQVIAMYDYAANNED-------ELSFSKGQLINVMNKDDPDWWQGEI---NGVTGLFPSNYV   86 (98)
T ss_dssp             CCCSEEEEESSCCCCSSTT-------SCCCCTTCEEEECBCCSSSEEBCBS---SSCBCCEETTSE
T ss_pred             CCCceEEEECCCCCCCCCC-------ccCCcCCCEEEEEEecCCCEEEEEE---CCcEEEEehHHe
Confidence            3446789999999998765       5999999999999999999999984   578999998765

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=98.85  E-value=1.9e-09  Score=99.62  Aligned_cols=58  Identities=24%  Similarity=0.449  Sum_probs=50.0

Q ss_pred             cCCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          43 AKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        43 ~k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .+|...+++|+|||.+..++       +|+|++||+|.|+++.|++||+|+..  +|+.|+||++..
T Consensus       114 ~~p~~~~~~alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~~--~g~~G~~P~nyv  171 (174)
T 3qwx_X          114 KKPIIEVVVGTFKFTGERET-------DLPFEQGERLEILSKTNQDWWEARNA--LGTTGLVPANYV  171 (174)
T ss_dssp             CCCCSEEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSSSEEEEECT--TCCEEEEEGGGE
T ss_pred             ccccccEEEEecCcccCCCC-------ccccccCCEEEEEEccCCCeEEEEEC--CCCEEEEChHHE
Confidence            45566789999999999765       69999999999999999999999962  578999999764

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=98.82  E-value=3.6e-09  Score=85.71  Aligned_cols=60  Identities=15%  Similarity=0.291  Sum_probs=45.6

Q ss_pred             CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeec-CCCceEEEEccCCCceeeecChhH
Q psy6613          45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY-DSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~-d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      +...+++|+|+|.+....   + +.+|+|++||+|+|+++. +++||.|++.. +|+.|+||++..
T Consensus        13 p~~~~~~a~~~~~~~~~~---~-~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~-~g~~G~fP~nyV   73 (78)
T 1k1z_A           13 PKMEVFQEYYGIPPPPGA---F-GGFLRLNPGDIVELTKAEAEHNWWEGRNTA-TNEVGWFPCNRV   73 (78)
T ss_dssp             CCEEECSCBSSCSCCSSS---S-CCCCCBCTTCEEEEEECCSSCSCEEEEETT-TTEEEEECSTTE
T ss_pred             ccEEEEEECCCCCCCCCC---C-CCccCCCCCCEEEEEEcCCCCCeEEEEECC-CCCEEEEehHHe
Confidence            445567777777775311   0 246999999999999995 89999999753 478999999764

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=4.6e-09  Score=88.10  Aligned_cols=56  Identities=14%  Similarity=0.271  Sum_probs=47.2

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEee--cC--CCceEEEEccCCCceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK--YD--SNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~--~d--~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ..++||+|||.+..++       +|+|++||+|+|+++  .+  ++||.|++.. +++.|+||+....
T Consensus        16 ~~~~~Alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~-~g~~G~fP~~yv~   75 (94)
T 2e5k_A           16 HETLQVIYPYTPQNDD-------ELELVPGDFIFMSPMEQTSTSEGWIYGTSLT-TGCSGLLPENYIT   75 (94)
T ss_dssp             CEEEEECSCBCCSSSS-------BCCBCTTCEEEECGGGCCSTTTTEEEEEESS-SCCEEEEEGGGEE
T ss_pred             CeEEEECCcCCCCCCC-------CcCCCCCCEEEEEECcCCCCCCCcEEEEECC-CCCEEEechHHeE
Confidence            4579999999998765       599999999999998  45  8999999643 4789999998754

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=98.79  E-value=2.8e-09  Score=87.40  Aligned_cols=55  Identities=15%  Similarity=0.324  Sum_probs=45.4

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEee---------------cCCCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK---------------YDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~---------------~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .+.+||+|||.+..++       +|+|++||+|.|+++               .+++||.|++.. +|+.|+||+...
T Consensus         5 ~~~~~Alydy~~~~~~-------eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~-~g~~G~fP~~yV   74 (83)
T 3i5r_A            5 GYQYRALYDYKKEREE-------DIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNET-TGERGDFPGTYV   74 (83)
T ss_dssp             EEEEEECSCBCCCSTT-------BCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETT-TTEEEEEEGGGE
T ss_pred             CcEEEEccccCCCCCC-------ccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCC-CCCEEEEehHHE
Confidence            5679999999998765       599999999999964               345899999853 378999998764

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=98.79  E-value=2.7e-09  Score=89.43  Aligned_cols=56  Identities=21%  Similarity=0.414  Sum_probs=46.8

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecC----CCceEEEEccCCCceeeecChhHH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYD----SNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d----~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ..+++||+|||.+..++       +|+|++||+|+|+++.+    .+||.|+..  +++.|+||+....
T Consensus        16 ~~~~~~alydy~a~~~~-------eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~--~~~~G~~P~~yv~   75 (93)
T 1wxu_A           16 DHVVARAEYDFVAVSDE-------EISFRAGDMLNLALKEQQPKVRGWLLASLD--GQTTGLIPANYVK   75 (93)
T ss_dssp             CBBCEEESSCBCCSSSS-------BCCBCSSCBCEECCTTTSCSCSSCEEEESS--SSSCEEECSTTEE
T ss_pred             CCEEEEECccCCCCCCC-------ccCcCCCCEEEEEECCCCCCCCCcEEEEeC--CcCEEEEehHHEE
Confidence            35679999999998775       59999999999999987    699999752  3359999998764

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.79  E-value=2.9e-09  Score=103.16  Aligned_cols=57  Identities=16%  Similarity=0.352  Sum_probs=48.3

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEe-----ecCCCceEEEEccC-------CCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKE-----KYDSNWWIGRLVKE-------GSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~-----~~d~~WWqar~v~~-------~~~~GlIPS~~~  109 (510)
                      ...++||+|||.+..++       +|+|++||+|+|++     ..+++||.|++..+       +|+.||||+...
T Consensus       141 ~~~~~rALYdY~a~~~d-------ELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYV  209 (213)
T 1mv3_A          141 FMFKVQAQHDYTATDTD-------ELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFT  209 (213)
T ss_dssp             CCEEEEESSCBCCCSTT-------CCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTE
T ss_pred             cceEEEECCCcCCCCCC-------cCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHe
Confidence            34679999999999876       59999999999999     78899999998532       368999999764

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=98.78  E-value=6.1e-09  Score=94.55  Aligned_cols=55  Identities=18%  Similarity=0.349  Sum_probs=47.5

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEee-cCCCceEEEEccCCCceeeecChhHHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK-YDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~-~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ..++||+|||.+..++       +|+|++||+|.|+++ .+++||.|+.   +|+.|+||+.....
T Consensus         5 ~~~~~Alydy~a~~~~-------ELsf~~Gd~i~Vl~~~~~~gWw~g~~---~g~~G~fP~~yv~~   60 (142)
T 2kbt_A            5 FGTAKARYDFCARDRS-------ELSLKEGDIIKILNKKGQQGWWRGEI---YGRIGWFPSNYVEE   60 (142)
T ss_dssp             CCEEEESSCCCCSSSS-------BCCCCTTCEEEEEECCCSSSEEEEEE---TTEEEEEETTSEEE
T ss_pred             CeEEEECCccCCCCCC-------cCCCCCCCEEEEEEecCCCCeEEEEE---CCeeEEechHHEEE
Confidence            3478999999998765       599999999999998 4899999997   57899999987643

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=98.77  E-value=4.4e-10  Score=89.57  Aligned_cols=54  Identities=24%  Similarity=0.479  Sum_probs=45.6

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCcee-eecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECG-FIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~G-lIPS~~~~  110 (510)
                      ..+++|+|||.+..++       +|+|++||+|.|+++.+++||.|++   ++..| +||+....
T Consensus         6 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~gG~~P~~yv~   60 (71)
T 1hsq_A            6 KCAVKALFDYKAQRED-------ELTFIKSAIIQNVEKQEGGWWRGDY---GGKKQLWFPSNYVE   60 (71)
T ss_dssp             SSCCCCSSCCCCSSSS-------SCCCCTTCCCBSCCCBTTTEECCBC---SSSCSCCEETTTCC
T ss_pred             CeEEEECCCCCcCCCC-------ccCCCCCCEEEEEEecCCCEEEEEE---CCeEEeEEChHHcE
Confidence            3468999999998775       5999999999999999999999987   34554 99998654

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=98.74  E-value=9e-09  Score=95.19  Aligned_cols=56  Identities=27%  Similarity=0.443  Sum_probs=47.6

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ..+++|+|||.+..++       +|+|++||+|+|++. |++||+|+... +|+.|+||++...+
T Consensus        12 ~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~-~~~Ww~~~~~~-~g~~G~vP~~yv~~   67 (175)
T 4d8k_A           12 DNLVIALHSYEPSHDG-------DLGFEKGEQLRILEQ-SGEWWKAQSLT-TGQEGFIPFNFVAK   67 (175)
T ss_dssp             -CEEEESSCBCCCSSS-------BCCBCTTCEEEEEEC-CSSEEEEEETT-TCCEEEEEGGGEEE
T ss_pred             CcEEEEccCcCCcCCc-------ccccccCCEEEEEcc-CCCEEEEEECC-CCceeeeccccccc
Confidence            3479999999998875       599999999999999 78999999864 46899999987654

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=98.71  E-value=1.2e-08  Score=85.34  Aligned_cols=56  Identities=13%  Similarity=0.179  Sum_probs=45.3

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEee---------------cCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK---------------YDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~---------------~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ....+||+|||.+..++       +|+|++||+|.|++.               .+.+||.|++.. .++.|+||+...
T Consensus        10 ~~~~~~Alydy~a~~~~-------ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~-~g~~G~fP~nyV   80 (90)
T 3o5z_A           10 EGFQYRALYPFRRERPE-------DLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNER-TRQRGDFPGTYV   80 (90)
T ss_dssp             SEEEEEECSCBCCCSTT-------BCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETT-TCCEEEEEGGGE
T ss_pred             CCcEEEEeeeECCCCCC-------ccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCC-CCCEEEeehHHE
Confidence            45679999999998765       599999999999943               233899999753 378999998764

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=98.68  E-value=1.5e-08  Score=95.98  Aligned_cols=54  Identities=24%  Similarity=0.542  Sum_probs=47.9

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ...++||+|||.+..++       +|+|++||+|+|+++.|++||.|+.   +|+.|+||+...
T Consensus       157 ~~~~~~al~~y~~~~~~-------eL~~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv  210 (217)
T 1gri_A          157 QPTYVQALFDFDPQEDG-------ELGFRRGDFIHVMDNSDPNWWKGAC---HGQTGMFPRNYV  210 (217)
T ss_dssp             CCCEEEESSCCCCSSTT-------BCCCCTTCEEEEEECCSSSEEEEEC---SSCEEEEEGGGE
T ss_pred             CceEEEecCCccCCCCC-------cCCCCCCCEEEEEEeCCCCeEEEEE---CCeEEEEeHHHe
Confidence            45689999999998765       6999999999999999999999997   578999999764

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=98.67  E-value=8.8e-08  Score=84.24  Aligned_cols=139  Identities=16%  Similarity=0.055  Sum_probs=82.1

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchhhh-------------hhhc------ccHHHHHHHH--HcCCeEEEE
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSSVL-------------TEVQ------TEIERVYELA--STLQLVVLD  208 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~pFe-------------~~I~------TslesI~~vi--~sGKi~ILD  208 (510)
                      +||+|+||||+.+.| + .. ...+......|....             ..+.      .-.+.+.+.+  ..++.+|+|
T Consensus         7 ~G~~GsGKsT~a~~L-~~~g-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~d   84 (179)
T 3lw7_A            7 TGMPGSGKSEFAKLL-KERG-AKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGTSNHDLVVFD   84 (179)
T ss_dssp             ECCTTSCHHHHHHHH-HHTT-CEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCSCCCSCEEEE
T ss_pred             ECCCCCCHHHHHHHH-HHCC-CcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCeEEEe
Confidence            899999999999999 6 32 122222222222110             0000      1223344555  678999999


Q ss_pred             eccCCchh--Hhhhc-CCCce-EEEEeCCCHHHHHHHHHhcCC----CcHHHHHHHH-HHHHHHHhcCCCCccEEEeCC-
Q psy6613         209 CDTINHPS--QLAKT-NLSPC-IVYLKISSPKVLQRLIKSRGK----SQTRHLNVQM-VAAEKLAQCPQEMFDVILDEN-  278 (510)
Q Consensus       209 ID~qg~~l--q~lks-~l~Pi-vIFIkPPS~e~L~~rLr~Rgt----~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvND-  278 (510)
                      -- .. +.  +.++. .-.|. +||+.. +.+++.+|+..|+.    .+.+.+..++ .....-...+....|++|.|+ 
T Consensus        85 g~-~~-~~~~~~l~~~~~~~~~~i~l~~-~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ad~vId~~~  161 (179)
T 3lw7_A           85 GV-RS-LAEVEEFKRLLGDSVYIVAVHS-PPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVIAMADYIITNDS  161 (179)
T ss_dssp             CC-CC-HHHHHHHHHHHCSCEEEEEEEC-CHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHTHHHHHHTCSEEEECCS
T ss_pred             CC-CC-HHHHHHHHHHhCCCcEEEEEEC-CHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccChHhHHHhCCEEEECCC
Confidence            64 33 12  22333 22454 555554 57999999998876    4456666666 222211111225679999988 


Q ss_pred             CHHHHHHHHHHHHHHH
Q psy6613         279 QLEDACEHIAEYLEAY  294 (510)
Q Consensus       279 dLd~A~~eL~~ileai  294 (510)
                      +++++++++.+++..+
T Consensus       162 ~~~~~~~~i~~~l~~~  177 (179)
T 3lw7_A          162 NYEEFKRRCEEVTDRV  177 (179)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            8999999999887765

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=98.67  E-value=3.4e-08  Score=78.08  Aligned_cols=59  Identities=19%  Similarity=0.395  Sum_probs=43.6

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEee-cCCCceEEEEccCCCceeeecChhH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK-YDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~-~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .++|++.|+...+.. .....+|+|++||+|+|+++ .+++||.|++.. +++.|+||+...
T Consensus         6 ~~~~~~~y~~~~~~~-~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~-~g~~G~fP~~yv   65 (70)
T 1gcq_C            6 KMEVFQEYYGIPPPP-GAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTA-TNEVGWFPCNRV   65 (70)
T ss_dssp             EEEECSCBSSSSCCG-GGCSCBCCBCTTCEEEEEECCTTCSEEEEEETT-TTEEEEEEGGGE
T ss_pred             cceEEEEEEecCCCC-CCCCCcCCcCCCCEEEEEeCCCCCCCeEEEeCC-CCCEeEeehHHe
Confidence            355666666655431 11123799999999999999 689999998753 478999999764

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=98.67  E-value=2e-08  Score=77.96  Aligned_cols=41  Identities=15%  Similarity=0.313  Sum_probs=37.0

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEE
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRL   94 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~   94 (510)
                      ..+++|+|||++..++       +|+|++||+|.|+++.|++||.|++
T Consensus        21 ~~~~~alydy~a~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~   61 (62)
T 1g2b_A           21 KELVLALYDYQEKSPR-------EVTMKKGDILTLLNSTNKDWWKVEV   61 (62)
T ss_dssp             SCEEEECSCBCCSSTT-------BCCBCTTCEEEEEECCSSSEEEEEE
T ss_pred             ceEEEEeeeECCCCCC-------ccCCCCCCEEEEEEecCCCEEEEEe
Confidence            4579999999998765       5999999999999999999999986

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=98.65  E-value=2.4e-08  Score=97.67  Aligned_cols=53  Identities=25%  Similarity=0.540  Sum_probs=47.0

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ..++|+|||.+..++       +|+|++||+++|+++.|++||.|+.   +|..|+||+....
T Consensus         3 ~~~~a~~~~~~~~~~-------el~~~~gd~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v~   55 (283)
T 3jv3_A            3 CQVIGMYDYTAQNDD-------ELAFSKGQIINVLNKEDPDWWKGEV---SGQVGLFPSNYVK   55 (283)
T ss_dssp             EEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSTTEEEEEE---TTEEEEEEGGGEE
T ss_pred             eEEEEccccCCCCCC-------cCCCCCCCEEEEEecCCCCEEEEEE---CCCCCcCCCcccc
Confidence            468999999998765       6999999999999999999999986   5789999988664

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=98.63  E-value=1.8e-08  Score=94.83  Aligned_cols=56  Identities=21%  Similarity=0.345  Sum_probs=47.9

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ..+++|+|+|.+..++       +|+|++||+++|+++.++ ||.|+++..+|..|+||++...
T Consensus        17 ~~~~~Alydf~~~~~~-------eLs~~~Gd~i~v~~~~~~-W~~g~~~~~~g~~G~fP~nyV~   72 (184)
T 3a98_A           17 ERHGVAIYNFQGSGAP-------QLSLQIGDVVRIQETCGD-WYRGYLIKHKMLQGIFPKSFIH   72 (184)
T ss_dssp             CCEEEESSCBCCSSTT-------BCCBCTTCEEEEEEEETT-EEEEEETTEEEEEEEEEGGGEE
T ss_pred             ceEEEEeeeeCCCCCC-------CCCcCCCCEEEEEecCCC-EEEEEEecCCCceEEECcceEE
Confidence            4579999999998764       699999999999999775 9999987656789999997654

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=98.57  E-value=4.5e-08  Score=81.70  Aligned_cols=57  Identities=12%  Similarity=0.300  Sum_probs=46.2

Q ss_pred             CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeec--CCCceEEEEccC-CCceeeecChhH
Q psy6613          45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY--DSNWWIGRLVKE-GSECGFIPSPVK  109 (510)
Q Consensus        45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~--d~~WWqar~v~~-~~~~GlIPS~~~  109 (510)
                      +... +.|+|||.+..+.       +|+|++||+++|++..  +++||.+|.... .++.||||+..+
T Consensus        16 ~~e~-~valydF~Ar~~~-------ELS~~kGd~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl   75 (82)
T 1u3o_A           16 GCEL-TVVLQDFSAAHSS-------ELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTL   75 (82)
T ss_dssp             CCEE-EECSSCBCCCSTT-------CCCBCTTCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGS
T ss_pred             CceE-EEEEeeecCCCCC-------eeeEcCCCEEEEEecCCCCCCEEEEEECCCCCCcEeeccccEE
Confidence            3444 6799999999775       5999999999999976  589999998542 237899999875

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=98.56  E-value=4.6e-08  Score=98.31  Aligned_cols=62  Identities=24%  Similarity=0.412  Sum_probs=52.6

Q ss_pred             hhccCCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          40 KARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        40 ~a~~k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      .+..++...+++|+|||++..++       +|+|++||+|.|+++.|++||.|++.  +|+.|+||+...+
T Consensus       140 ~P~~~p~~~~~~al~dy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~~--~g~~G~~P~~yv~  201 (308)
T 3qwy_A          140 AAYKKPIIEVVVGTFKFTGERET-------DLPFEQGERLEILSKTNQDWWEARNA--LGTTGLVPANYVQ  201 (308)
T ss_dssp             EECCCCCCEEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSSSEEEEECT--TSCEEEEEGGGEE
T ss_pred             cccccccceeEEEeceEcCCCCC-------cCcCCCCCEEEEEEcCCCCeEEEEeC--CCCeeEecccccc
Confidence            33345566789999999998775       59999999999999999999999973  5689999998876

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=98.54  E-value=6.6e-08  Score=91.15  Aligned_cols=55  Identities=18%  Similarity=0.489  Sum_probs=47.7

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ...++||+|||.+..++       +|+|++||+|.|+++.+++||.|+.   +|..|+||+....
T Consensus        10 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~vl~~~~~gWw~g~~---~g~~G~~P~~yv~   64 (193)
T 1ng2_A           10 ILQTYRAIADYEKTSGS-------EMALSTGDVVEVVEKSESGWWFCQM---KAKRGWIPASFLE   64 (193)
T ss_dssp             CCEEEECSSCBCCSSTT-------CCCBCTTCEEEEEECCTTSCCEEEE---CCCCCCCCGGGCC
T ss_pred             cCcEEEEcCCcCCCCCC-------cCCCCCCCEEEEEEecCCCeEEEEE---CCeeeEechheEE
Confidence            34568999999998765       5999999999999999999999995   5789999987764

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=98.53  E-value=8.1e-08  Score=90.56  Aligned_cols=54  Identities=22%  Similarity=0.289  Sum_probs=47.5

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ...++|+|||++..++       +|+|.+||+|.|+++.+++||.|+.   +|..|+||+....
T Consensus        81 ~~~~~al~dy~a~~~~-------eLs~~~Gd~i~vl~~~~~gWw~g~~---~g~~G~~P~~yv~  134 (193)
T 1ng2_A           81 GEPYVAIKAYTAVEGD-------EVSLLEGEAVEVIHKLLDGWWVIRK---DDVTGYFPSMYLQ  134 (193)
T ss_dssp             CEEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCTTSEEEEEE---TTEEEEEEGGGEE
T ss_pred             ceeeeeccccCCCCCC-------cccccCCCEEEEEEecCCCeEEEEE---CCCEEEEehHHeE
Confidence            3568899999998775       5999999999999999999999996   5789999998764

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=98.53  E-value=1.6e-08  Score=97.89  Aligned_cols=56  Identities=25%  Similarity=0.527  Sum_probs=48.8

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ..++||+|||.+..++       +|+|++||+|.|+++.|++||.|+..  +|+.|+||++..++
T Consensus       136 ~~~~~al~dy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~~--~g~~G~~P~~yv~~  191 (230)
T 2dvj_A          136 AEYVRALFDFNGNDEE-------DLPFKKGDILRIRDKPEEQWWNAEDS--EGKRGMIPVPYVEK  191 (230)
T ss_dssp             CCCCBCCSCCCCSSSS-------SCCCCSSCBCCCCBCSCSSEEEEECT--TSCEEEEEGGGSCC
T ss_pred             ceeEEEeeeecCCCCC-------CccCcCCCEEEEEEccCCCcEEEEeC--CCCEEEEehHHeEE
Confidence            3468999999998775       59999999999999999999999953  57899999988765

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=98.52  E-value=9.1e-08  Score=100.59  Aligned_cols=55  Identities=15%  Similarity=0.376  Sum_probs=48.5

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ...+++|+|||.+..++       +|+|++||+|.|+++.+++||.|+.   +|..|+||+....
T Consensus        29 ~~~~~~al~~~~~~~~~-------eL~~~~gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~   83 (466)
T 2pz1_A           29 SVVCAEALWDHVTMDDQ-------ELGFKAGDVIEVMDATNREWWWGRV---ADGEGWFPASFVR   83 (466)
T ss_dssp             CCEEEEESSCBCCCCTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGEE
T ss_pred             CccEEEEccccCCCCCC-------cCCCCCCCEEEEEEecCCCEEEEEE---CCcEEEEehhHee
Confidence            35689999999998775       5999999999999999999999997   4789999998754

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=98.49  E-value=8e-08  Score=102.49  Aligned_cols=56  Identities=21%  Similarity=0.475  Sum_probs=49.1

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      .+++|+|||++..++       +|+|++||+|+|+++.|++||+|+... +|+.|+||++..++
T Consensus        86 ~~~~alyd~~~~~~~-------el~~~~gd~i~v~~~~~~~ww~~~~~~-~g~~G~~P~~yv~~  141 (535)
T 2h8h_A           86 TTFVALYDYESRTET-------DLSFKKGERLQIVNNTEGDWWLAHSLS-TGQTGYIPSNYVAP  141 (535)
T ss_dssp             -CEEESSCBCCCSSS-------BCCBCTTCEEEEEECSSSSEEEEEETT-TCCEEEEEGGGEEE
T ss_pred             cEEEEccccCCcCCC-------cCCcCCCCEEEEEEecCCCceEEEECC-CCcceEecchhhcc
Confidence            458999999999875       599999999999999999999999864 47899999998865

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=98.45  E-value=1.3e-07  Score=98.47  Aligned_cols=55  Identities=22%  Similarity=0.497  Sum_probs=48.6

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      +++|+|||.+..++       +|+|++||++.|+++.|++||.|+... +|+.|+||++...+
T Consensus         4 ~~~al~~~~~~~~~-------el~~~~gd~~~v~~~~~~~ww~~~~~~-~g~~G~~P~~yv~~   58 (452)
T 1fmk_A            4 TFVALYDYESRTET-------DLSFKKGERLQIVNNTEGDWWLAHSLS-TGQTGYIPSNYVAP   58 (452)
T ss_dssp             EEEESSCBCCCSSS-------BCCBCTTCEEEESCCCSSSEEEEEETT-TCCEEEEEGGGEEE
T ss_pred             EEEECCccCCCCCC-------CCCccCCCEEEEeccCCCCceEEEEcC-CCcccccCcccccc
Confidence            58899999998876       599999999999999999999999864 47899999987754

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=98.45  E-value=1.4e-07  Score=96.24  Aligned_cols=53  Identities=11%  Similarity=0.323  Sum_probs=47.3

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ..++|+|||++..++       +|+|++||+|.|+++.|++||.|+.   +|+.|+||++...
T Consensus       175 ~~~~alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~  227 (341)
T 2dyb_A          175 PRAEALFDFTGNSKL-------ELNFKAGDVIFLLSRINKDWLEGTV---RGATGIFPLSFVK  227 (341)
T ss_dssp             CEEEESSCBCCSSSS-------BCCBCTTCEEEEEEECSSSEEEEEE---TTEEEEEEGGGEE
T ss_pred             cEEEEEEeeCCCCCC-------cCCccCCCEEEEEEecCCCEEEEEE---CCcEEEechHHeE
Confidence            469999999998875       5999999999999999999999996   5789999998764

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=98.43  E-value=1.8e-07  Score=97.27  Aligned_cols=57  Identities=18%  Similarity=0.317  Sum_probs=48.8

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEee-cCCCceEEEEccCCCceeeecChhHHH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK-YDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~-~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ...+++|+|||++..++       +|+|++||++.|+++ .|++||.|+..  .|..|+||++...+
T Consensus        10 ~~~~~~aly~~~~~~~~-------el~~~~gd~i~v~~~~~~~~ww~~~~~--~g~~G~~P~~yv~~   67 (450)
T 1k9a_A           10 SGTECIAKYNFHGTAEQ-------DLPFCKGDVLTIVAVTKDPNWYKAKNK--VGREGIIPANYVQK   67 (450)
T ss_dssp             TTCEEEESSCBCCSSSS-------BCCBCTTCEEEEEEECSSTTEEEEECT--TCCEEEEEGGGEEE
T ss_pred             CCCEEEECCCcCccCCC-------cCCCCCCCEEEEeeccCCCCceEEEEC--CCceeeechhcccc
Confidence            34578999999999875       599999999999998 68899999973  47899999997654

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=98.43  E-value=1.8e-07  Score=94.01  Aligned_cols=56  Identities=25%  Similarity=0.527  Sum_probs=48.8

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ..++||+|||.+..++       +|+|++||+|.|+++.|++||.|+..  +|+.|+||+....+
T Consensus       134 ~~~~~alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~~--~g~~G~~P~~yv~~  189 (304)
T 2eyz_A          134 AEYVRALFDFNGNDEE-------DLPFKKGDILRIRDKPEEQWWNAEDS--EGKRGMIPVPYVEK  189 (304)
T ss_dssp             CCEEEECSCCCCSCSS-------SCCCCTTCEEEEEECCSSSEEEEECT--TSCEEEEESTTEEE
T ss_pred             ceeEEEEeeecCCCCC-------cCcccCCCEEEEEEecCCCcEEEEeC--CCceeccchhcccc
Confidence            4579999999998875       59999999999999999999999953  57899999987654

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=98.42  E-value=1.7e-06  Score=76.56  Aligned_cols=135  Identities=10%  Similarity=0.024  Sum_probs=75.3

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchhhhhhhc--ccHHHHHHHHHcCCeEEEEeccCCch------------
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSSVLTEVQ--TEIERVYELASTLQLVVLDCDTINHP------------  215 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~pFe~~I~--TslesI~~vi~sGKi~ILDID~qg~~------------  215 (510)
                      +||+|+||||+.+.|.+ ..-.|   +..-   .|.....  ..+-.....+..|..+|+|-...+..            
T Consensus         7 ~G~~GsGKsT~~~~L~~~l~~~~---i~~d---~~~~~~~~~~~~~~~~~~l~~~~~vi~dr~~~~~~v~~~~~~~~~~~   80 (173)
T 3kb2_A            7 EGPDCCFKSTVAAKLSKELKYPI---IKGS---SFELAKSGNEKLFEHFNKLADEDNVIIDRFVYSNLVYAKKFKDYSIL   80 (173)
T ss_dssp             ECSSSSSHHHHHHHHHHHHCCCE---EECC---CHHHHTTCHHHHHHHHHHHTTCCSEEEESCHHHHHHHTTTBTTCCCC
T ss_pred             ECCCCCCHHHHHHHHHHHhCCee---ecCc---ccccchhHHHHHHHHHHHHHhCCCeEEeeeecchHHHHHHHHHhhHh
Confidence            89999999999999886 33111   1110   1111111  11112233567799999994332200            


Q ss_pred             ----hHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcH-HHHHHHH-HHHHHHHhcCCCCccEEEeCC--CHHHHHHH
Q psy6613         216 ----SQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQT-RHLNVQM-VAAEKLAQCPQEMFDVILDEN--QLEDACEH  286 (510)
Q Consensus       216 ----lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~-e~i~kRL-~aa~eLEq~~~~~FD~VIvND--dLd~A~~e  286 (510)
                          ...++. ...|.+|+....+.+++.+|+..|+.... .+...++ +.-+++...|. .-+++|.++  ++++++++
T Consensus        81 ~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~id~~~~~~~ev~~~  159 (173)
T 3kb2_A           81 TERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILELYREVMSNAG-LHTYSWDTGQWSSDEIAKD  159 (173)
T ss_dssp             CHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHHHTCS-SCEEEEETTTSCHHHHHHH
T ss_pred             hHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHhhcC-CCEEEEECCCCCHHHHHHH
Confidence                111111 12344444444678999999988654332 2344555 44455555554 456777765  78988888


Q ss_pred             HHHHHH
Q psy6613         287 IAEYLE  292 (510)
Q Consensus       287 L~~ile  292 (510)
                      +...+.
T Consensus       160 I~~~~~  165 (173)
T 3kb2_A          160 IIFLVE  165 (173)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            884443

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=98.37  E-value=3.2e-07  Score=71.54  Aligned_cols=39  Identities=18%  Similarity=0.499  Sum_probs=34.8

Q ss_pred             ccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          69 YAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        69 ~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      .+|+|++||+|.|+++.+++||.|+.   +|+.|+||++...
T Consensus         4 ~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~   42 (63)
T 1tuc_A            4 REVTMKKGDILTLLNSTNKDWWKVEV---NDRQGFVPAAYVK   42 (63)
T ss_dssp             CCCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGEE
T ss_pred             cccCCCCCCEEEEEEecCCCEEEEEE---CCcEEEEeHHHEE
Confidence            47999999999999999999999985   5789999998764

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=98.36  E-value=2.3e-07  Score=87.74  Aligned_cols=51  Identities=25%  Similarity=0.529  Sum_probs=40.2

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeec-CCCceEEEEccCCCceeeecChhH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY-DSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~-d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      -++|+|||.+..++       +|+|++||+|.|++.. +++||.|+.   +|+.|+||++..
T Consensus         2 ~~~al~~~~~~~~~-------eLs~~~Gd~i~v~~~~~~~~W~~~~~---~g~~G~~P~~yv   53 (217)
T 1gri_A            2 EAIAKYDFKATADD-------ELSFKRGDILKVLNEECDQNWYKAEL---NGKDGFIPKNYI   53 (217)
T ss_dssp             EEEECSCBCCCSSS-------CCCBCTTCEEEC------CCEEEEES---SSCEEEEEGGGE
T ss_pred             EEEEeeccCCcCCC-------cCCCCCCCEEEEEeccCCCCeEeecc---CCccceECCccc
Confidence            47899999998875       5999999999999986 679999985   578999998765

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=98.34  E-value=4.2e-07  Score=94.42  Aligned_cols=56  Identities=21%  Similarity=0.454  Sum_probs=47.3

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ...+++|+|||.+..++       +|+|++||+|.|+++ +++||.|+... +|+.|+||++...
T Consensus         7 ~~~~~~al~~~~~~~~~-------el~~~~gd~~~v~~~-~~~W~~~~~~~-~g~~G~~P~~yv~   62 (454)
T 1qcf_A            7 IRIIVVALYDYEAIHHE-------DLSFQKGDQMVVLEE-SGEWWKARSLA-TRKEGYIPSNYVA   62 (454)
T ss_dssp             CCCEEEESSCBCCCSTT-------BCCBCTTCEEEEEEC-CTTEEEEEETT-TCCEEEEEGGGEE
T ss_pred             CCeEEEECcccCCcCCC-------cCcccCCCEEEEEec-CCCCeEEEECC-CCceEEecchhcc
Confidence            34578999999999875       599999999999998 57899999743 4689999998764

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=98.31  E-value=4.3e-07  Score=95.83  Aligned_cols=53  Identities=17%  Similarity=0.196  Sum_probs=45.8

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeec-CCCceEEEEccCCCceeeecChhHH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY-DSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~-d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      .+++|+|||.+..++       +|+|++||+++|++.. +++||.|+.   .++.|+||++...
T Consensus        44 ~~~~alyd~~~~~~~-------els~~~gd~~~v~~~~~~~~w~~~~~---~~~~G~~P~~yv~   97 (495)
T 1opk_A           44 NLFVALYDFVASGDN-------TLSITKGEKLRVLGYNHNGEWCEAQT---KNGQGWVPSNYIT   97 (495)
T ss_dssp             CEEEESSCBCCCSTT-------BCCBCTTCEEEEEEECTTSSEEEEEC---SSCEEEEEGGGEE
T ss_pred             cEEEEeCCcCCCCCC-------CCCccCCCEEEEeecCCCCCceeeee---cCCcceecccccc
Confidence            468899999998875       5999999999999986 889999997   3567999998763

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=97.64  E-value=7.9e-08  Score=96.58  Aligned_cols=56  Identities=30%  Similarity=0.488  Sum_probs=49.3

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ..++||+|||.+..++       +|+|++||+|.|+++.|++||.|++.  +|..|+||++...+
T Consensus       125 ~~~~~alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~~~~~--~g~~G~~P~~yv~~  180 (303)
T 2lqn_A          125 LEYVRTLYDFPGNDAE-------DLPFKKGEILVIIEKPEEQWWSARNK--DGRVGMIPVPYVEK  180 (303)
Confidence            4579999999998775       59999999999999999999999964  57899999988765

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=98.30  E-value=2.3e-07  Score=93.24  Aligned_cols=54  Identities=17%  Similarity=0.206  Sum_probs=45.9

Q ss_pred             eeEEEEeeccCCC--CCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGS--IDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~--~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ..+++|+|||.|.  .+       .+|+|++||+|.|+++.+++||.|+.   +|+.|+||+....
T Consensus       237 ~~~~~al~d~~~~a~~~-------~eL~~~~Gd~i~v~~~~~~gWw~g~~---~g~~G~fP~~yv~  292 (304)
T 2eyz_A          237 PIYARVIQKRVPNAYDK-------TALALEVGELVKVTKINVSGQWEGEC---NGKRGHFPFTHVR  292 (304)
T ss_dssp             CCCSCCSSCBCCCTTCS-------SCCCBCTTSCCEEEEECTTSCEEEEE---TTEEEECCCTTSC
T ss_pred             CEEEEEeeeecCCCCCC-------CeecccCCCEEEEEEecCCCeEEEEE---CCceEEechHHEE
Confidence            3578999999954  43       36999999999999999999999997   4799999987653

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=98.30  E-value=8e-07  Score=82.82  Aligned_cols=139  Identities=12%  Similarity=0.116  Sum_probs=83.1

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchhhh----------hhhc--------ccHHHHHHHHHc---CCeEEEEe
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVL----------TEVQ--------TEIERVYELAST---LQLVVLDC  209 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~pFe----------~~I~--------TslesI~~vi~s---GKi~ILDI  209 (510)
                      +||+|+||||+.++|.+......+....+.|..+.          +.+.        .-...+.+.+..   |+.+|||-
T Consensus         6 ~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ildg   85 (216)
T 3dl0_A            6 MGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGFLLDG   85 (216)
T ss_dssp             ECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTCEEEES
T ss_pred             ECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCCEEEeC
Confidence            89999999999999987223445555566665311          1111        112334444433   88999997


Q ss_pred             ccCCchhHh---hhc-----CCCc-eEEEEeCCCHHHHHHHHHhc---------------------------------CC
Q psy6613         210 DTINHPSQL---AKT-----NLSP-CIVYLKISSPKVLQRLIKSR---------------------------------GK  247 (510)
Q Consensus       210 D~qg~~lq~---lks-----~l~P-ivIFIkPPS~e~L~~rLr~R---------------------------------gt  247 (510)
                      -+..  ...   +..     ...| .+||+..|. +++.+|+..|                                 ..
T Consensus        86 ~p~~--~~~~~~~~~~~~~~~~~~d~vi~l~~~~-e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~~  162 (216)
T 3dl0_A           86 FPRT--VAQAEALEEILEEMGKPIDYVINIQVDK-DVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRAD  162 (216)
T ss_dssp             CCCS--HHHHHHHHHHHHHTTCCCSEEEEEECCG-GGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECCTT
T ss_pred             CCCC--HHHHHHHHHHHHHcCCCCCEEEEEECCH-HHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccCCCC
Confidence            6544  221   221     2335 567776654 8888888887                                 55


Q ss_pred             CcHHHHHHHH-HHHHHH---HhcCCC-CccEEEe-CCCHHHHHHHHHHHHH
Q psy6613         248 SQTRHLNVQM-VAAEKL---AQCPQE-MFDVILD-ENQLEDACEHIAEYLE  292 (510)
Q Consensus       248 ~~~e~i~kRL-~aa~eL---Eq~~~~-~FD~VIv-NDdLd~A~~eL~~ile  292 (510)
                      ++.+.+.+|| ...++.   ...|.. ...++|. +.++++.++++.++|+
T Consensus       163 d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~  213 (216)
T 3dl0_A          163 DNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLG  213 (216)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence            6678888888 333322   222211 1234554 4679999999986664

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=97.63  E-value=8.7e-08  Score=96.27  Aligned_cols=57  Identities=12%  Similarity=0.180  Sum_probs=47.9

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ..++||+|||.++.++     +.+|+|++||+|.|+++.+++||.|+.   +|+.|+||+...+.
T Consensus       237 ~~~~~alydy~~~~~~-----~~eLs~~~Gd~i~v~~~~~~gWw~g~~---~g~~G~fP~~yv~~  293 (303)
T 2lqn_A          237 PVFAKAIQKRVPCAYD-----KTALALEVGDIVKVTRMNINGQWEGEV---NGRKGLFPFTHVKI  293 (303)
Confidence            4579999999865532     137999999999999999999999987   57899999987654

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=98.29  E-value=5.8e-06  Score=76.29  Aligned_cols=141  Identities=13%  Similarity=0.086  Sum_probs=78.1

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh---------hhh-hhcccHHHHHHHHHcCCeEEEEeccCCc-hhHh
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS---------VLT-EVQTEIERVYELASTLQLVVLDCDTINH-PSQL  218 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p---------Fe~-~I~TslesI~~vi~sGKi~ILDID~qg~-~lq~  218 (510)
                      +|++|+||||+.+.|.. ....+--.........         |.. .....+..+.+.+..|..+|+|...... ....
T Consensus        24 ~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~vivd~~~~~~~~~~~  103 (202)
T 3t61_A           24 MGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGERLASREPVVVSCSALKRSYRDK  103 (202)
T ss_dssp             ECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTSSSCCEEECCCCSHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHHHHhcCCCEEEECCCCCHHHHHH
Confidence            99999999999999876 3211111111111100         000 0013455667777899999999765330 0122


Q ss_pred             hhc-CCCc-eEEEEeCCCHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhcCCCCccEEEeC-CCHHHHHHHHHHHHHHH
Q psy6613         219 AKT-NLSP-CIVYLKISSPKVLQRLIKSRGKS-QTRHLNVQMVAAEKLAQCPQEMFDVILDE-NQLEDACEHIAEYLEAY  294 (510)
Q Consensus       219 lks-~l~P-ivIFIkPPS~e~L~~rLr~Rgt~-~~e~i~kRL~aa~eLEq~~~~~FD~VIvN-DdLd~A~~eL~~ileai  294 (510)
                      ++. ...| .+||+.+ +.+++.+|+..|+.. ...+...+.  ....+..+...-|++|.+ .+++++++++.++|...
T Consensus       104 l~~~~~~~~~vi~l~~-~~e~~~~Rl~~R~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Id~~~~~~e~~~~I~~~l~~~  180 (202)
T 3t61_A          104 LRESAPGGLAFVFLHG-SESVLAERMHHRTGHFMPSSLLQTQ--LETLEDPRGEVRTVAVDVAQPLAEIVREALAGLARL  180 (202)
T ss_dssp             HHHTSTTCCEEEEEEC-CHHHHHHHHHHHHSSCCCHHHHHHH--HHHCCCCTTSTTEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCeEEEEEeC-CHHHHHHHHHHhhccCCCHHHHHHH--HHhcCCCCCCCCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence            222 2233 4566665 589999999887543 222222222  111222233345667754 67999999998887643

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.28  E-value=6.8e-06  Score=76.16  Aligned_cols=140  Identities=10%  Similarity=0.087  Sum_probs=77.1

Q ss_pred             CCCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh----------hhh-hhc---ccH-HHHHHHHHcCCeEEE
Q psy6613         146 PGMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS----------VLT-EVQ---TEI-ERVYELASTLQLVVL  207 (510)
Q Consensus       146 ~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p----------Fe~-~I~---Tsl-esI~~vi~sGKi~IL  207 (510)
                      .+.+|  +||+|+||||+.+.|.. .. ...+.--...+..          |.. ...   +.+ ..+...+..|..+|+
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g-~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~vii  106 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADETG-LEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDARADAGVSTII  106 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHC-CEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhC-CeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhcCCCEEE
Confidence            34555  99999999999998876 32 1111110011110          100 000   122 223445578999999


Q ss_pred             EeccCCchhHh---hhcCC-CceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCC-CHH
Q psy6613         208 DCDTINHPSQL---AKTNL-SPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVILDEN-QLE  281 (510)
Q Consensus       208 DID~qg~~lq~---lks~l-~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvND-dLd  281 (510)
                      |+....  ...   ++... ...+||+.+| .+++.+|+..|+.....  ...+ ..-.+.+..|....|++|.|+ +++
T Consensus       107 d~~~~~--~~~~~~l~~~~~~~~vv~l~~~-~e~l~~Rl~~R~~~~~~--~~~l~~~~~~~~~~~~~~~~~~Id~~~~~~  181 (200)
T 4eun_A          107 TCSALK--RTYRDVLREGPPSVDFLHLDGP-AEVIKGRMSKREGHFMP--ASLLQSQLATLEALEPDESGIVLDLRQPPE  181 (200)
T ss_dssp             EECCCC--HHHHHHHTTSSSCCEEEEEECC-HHHHHHHHTTCSCCSSC--GGGHHHHHHHCCCCCTTSCEEEEETTSCHH
T ss_pred             Echhhh--HHHHHHHHHhCCceEEEEEeCC-HHHHHHHHHhcccCCCC--HHHHHHHHHHhCCCCCCCCeEEEECCCCHH
Confidence            986544  222   22211 3467788865 89999999888653321  1112 111222334555578988764 688


Q ss_pred             HHHHHHHHHH
Q psy6613         282 DACEHIAEYL  291 (510)
Q Consensus       282 ~A~~eL~~il  291 (510)
                      ++++++.++|
T Consensus       182 e~~~~I~~~l  191 (200)
T 4eun_A          182 QLIERALTWL  191 (200)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888777444

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.26  E-value=3.3e-06  Score=81.09  Aligned_cols=145  Identities=12%  Similarity=0.119  Sum_probs=80.8

Q ss_pred             CCCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh--------hhhhhc--------------------ccHHH
Q psy6613         146 PGMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS--------VLTEVQ--------------------TEIER  194 (510)
Q Consensus       146 ~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p--------Fe~~I~--------------------Tsles  194 (510)
                      .+.+|  .||+|+||||+.++|.+ ....+.  + .+||.|        +.+.+.                    .-.+.
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~--~-~~~~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~~  101 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYD--V-IMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLK  101 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHTTTSC--E-EEECTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCCC
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCC--c-eeecCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            45555  89999999999999988 332222  2 123333        111110                    00112


Q ss_pred             HHHHHHcCCeEEEE----------eccCCch---hHhhhc----CCCce-EEEEeCCCHHHHHHHHHhcCCC------cH
Q psy6613         195 VYELASTLQLVVLD----------CDTINHP---SQLAKT----NLSPC-IVYLKISSPKVLQRLIKSRGKS------QT  250 (510)
Q Consensus       195 I~~vi~sGKi~ILD----------ID~qg~~---lq~lks----~l~Pi-vIFIkPPS~e~L~~rLr~Rgt~------~~  250 (510)
                      |...+++|++||+|          .-+.+..   +..+..    .+.|- +||+..| .+++.+|+..|+..      ..
T Consensus       102 i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~-~e~~~~R~~~R~~~~dr~e~~~  180 (229)
T 4eaq_A          102 VIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVS-AEVGRERIIKNSRDQNRLDQED  180 (229)
T ss_dssp             CHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHHC-----CCCHHH
T ss_pred             HHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhcCCCccchhhhh
Confidence            34566799999999          3222200   112221    34554 4555554 68999999888532      12


Q ss_pred             HHHHHHH-HHHHHHHhcCCCCccEEEe-CCCHHHHHHHHHHHHHHHH
Q psy6613         251 RHLNVQM-VAAEKLAQCPQEMFDVILD-ENQLEDACEHIAEYLEAYW  295 (510)
Q Consensus       251 e~i~kRL-~aa~eLEq~~~~~FD~VIv-NDdLd~A~~eL~~ileai~  295 (510)
                      .+..+|+ +.-.++...++..| .+|. +.++++.++++.++|+.++
T Consensus       181 ~~~~~rv~~~y~~l~~~~~~~~-~vIDa~~s~eev~~~I~~~l~~~l  226 (229)
T 4eaq_A          181 LKFHEKVIEGYQEIIHNESQRF-KSVNADQPLENVVEDTYQTIIKYL  226 (229)
T ss_dssp             HHHHHHHHHHHHHHTTTCTTTE-EEEETTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCE-EEEeCCCCHHHHHHHHHHHHHHHh
Confidence            3455666 44455655544322 2333 4779999999998887654

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=98.24  E-value=8.6e-07  Score=96.00  Aligned_cols=56  Identities=13%  Similarity=0.049  Sum_probs=48.7

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ..+||+|||.++.++       +|+|++||+|.|+++.+++||.|+... +|+.|+||+....+
T Consensus       443 ~~~~aly~y~a~~~d-------ELs~~~GD~i~v~~~~~~gW~~G~~~~-~g~~G~fPsnyV~~  498 (526)
T 2de0_X          443 HNQIAIYAHQPRTAD-------EIPMEPGDIIGVAGNHWDGYSKGVNRK-LGRTGLYPSYKVRE  498 (526)
T ss_dssp             CEEEECSCBCCSSTT-------BCCBCTTCEEEEEEECSSSEEEEEETT-TTEEEEEEGGGEEE
T ss_pred             cceEEeecCCCCCCC-------cCCcCCCCEEEEccccCCCeeEEEeCC-CCCEEEECchheeE
Confidence            458999999999876       599999999999999999999999754 47899999987643

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=98.24  E-value=7.5e-06  Score=73.47  Aligned_cols=131  Identities=16%  Similarity=0.022  Sum_probs=76.3

Q ss_pred             EecCcCChHHHHHHHhc-CCCCcee-eecC--CCchhh-h-----------------hhh----cccHHHHHHHHHcCCe
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAI-MERS--NSRSSV-L-----------------TEV----QTEIERVYELASTLQL  204 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~-sVsh--TTR~pF-e-----------------~~I----~TslesI~~vi~sGKi  204 (510)
                      +|++|+||||+.+.|.+ .+..|.. .+..  .++++. .                 ..+    ..-.+.+..+++.|..
T Consensus         9 ~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   88 (178)
T 1qhx_A            9 NGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVAMARAGAR   88 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             ECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHHHHhcCCe
Confidence            99999999999999988 5433321 1110  122220 0                 000    0223456777889999


Q ss_pred             EEEEecc-CCchh--Hhhhc--CCCc-eEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC-CCCccEEEeC
Q psy6613         205 VVLDCDT-INHPS--QLAKT--NLSP-CIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCP-QEMFDVILDE  277 (510)
Q Consensus       205 ~ILDID~-qg~~l--q~lks--~l~P-ivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~-~~~FD~VIvN  277 (510)
                      ||+|+.. ++ +.  ...+.  .-.+ ++||+.+ +.+++.+|++.|+.......    .  ..++..+ ...+|++|.+
T Consensus        89 vi~~~~~~~~-~~~~~~~~~~~~~~~~~~v~l~~-~~e~l~~R~~~r~~~~~~~~----~--~~~~~~~~~~~~d~~idt  160 (178)
T 1qhx_A           89 IIIDDVFLGG-AAAQERWRSFVGDLDVLWVGVRC-DGAVAEGRETARGDRVAGMA----A--KQAYVVHEGVEYDVEVDT  160 (178)
T ss_dssp             EEEEECCTTT-HHHHHHHHHHHTTCCEEEEEEEC-CHHHHHHHHHHTSSSCTTHH----H--HHTTGGGTTCCCSEEEET
T ss_pred             EEEEeccccC-hHHHHHHHHHhcCCcEEEEEEEC-CHHHHHHHHHhhCCcccchh----h--hhchhhccCCCCcEEEEC
Confidence            9999976 33 11  12222  2234 5677765 69999999998875432211    1  1122211 1348999986


Q ss_pred             C--CHHHHHHHHHH
Q psy6613         278 N--QLEDACEHIAE  289 (510)
Q Consensus       278 D--dLd~A~~eL~~  289 (510)
                      +  +.+++++++.+
T Consensus       161 ~~~~~~~~~~~I~~  174 (178)
T 1qhx_A          161 THKESIECAWAIAA  174 (178)
T ss_dssp             TSSCHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHH
Confidence            5  56777777763

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=98.23  E-value=1.7e-06  Score=83.43  Aligned_cols=138  Identities=14%  Similarity=0.087  Sum_probs=81.9

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchh----------hhhhhc----cc----HHHHHHHHHc---CCeEEEEe
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS----------VLTEVQ----TE----IERVYELAST---LQLVVLDC  209 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p----------Fe~~I~----Ts----lesI~~vi~s---GKi~ILDI  209 (510)
                      +||+|+||||+.++|.+......+++.+++|..          +.+.+.    .+    ...+...+..   ++.+|||.
T Consensus        35 ~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ildg  114 (243)
T 3tlx_A           35 LGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQCKKGFILDG  114 (243)
T ss_dssp             ECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGGGSSEEEEES
T ss_pred             ECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcccccCCEEecC
Confidence            999999999999999872234556666666653          111111    11    2233444433   88899999


Q ss_pred             ccCCchhHhhhc--------CCCc-eEEEEeCCCHHHHHHHHHhcCC---------------------------------
Q psy6613         210 DTINHPSQLAKT--------NLSP-CIVYLKISSPKVLQRLIKSRGK---------------------------------  247 (510)
Q Consensus       210 D~qg~~lq~lks--------~l~P-ivIFIkPPS~e~L~~rLr~Rgt---------------------------------  247 (510)
                      .+.+  ....+.        ...| .+||+..| .+++.+|+.+|+.                                 
T Consensus       115 ~p~~--~~q~~~l~~~l~~~~~~~d~vi~l~~p-~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~d  191 (243)
T 3tlx_A          115 YPRN--VKQAEDLNKLLQKNQTKLDGVFYFNVP-DEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQRED  191 (243)
T ss_dssp             CCCS--HHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGG
T ss_pred             CCCc--HHHHHHHHHHHHHcCCCCceEEEEeCC-HHHHHHHHHcCCCCcccCcccccccCCCcccCccccccccccCCCC
Confidence            8887  433221        1334 44444444 4899999988752                                 


Q ss_pred             CcHHHHHHHH-HHHHHH---HhcCCCCccEEEe--CCCHHHHHHHHHHHH
Q psy6613         248 SQTRHLNVQM-VAAEKL---AQCPQEMFDVILD--ENQLEDACEHIAEYL  291 (510)
Q Consensus       248 ~~~e~i~kRL-~aa~eL---Eq~~~~~FD~VIv--NDdLd~A~~eL~~il  291 (510)
                      ++.+.+.+|| ...++.   ...|...--++.+  +.+.++.++++.++|
T Consensus       192 d~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  241 (243)
T 3tlx_A          192 DNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHI  241 (243)
T ss_dssp             GSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHH
Confidence            4567888888 433332   2222111012333  357999999888655

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.22  E-value=4.7e-07  Score=78.27  Aligned_cols=53  Identities=11%  Similarity=0.079  Sum_probs=42.3

Q ss_pred             EEEEeecc--CCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          49 AVRTNVKY--DGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        49 ~VRAlfdY--~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      .++|++++  .....       ..|+|++|++|.|+++.+++||.+|+  ..|..|+||.+.++
T Consensus        41 ~~~a~~~f~~~k~g~-------~DLpfkkGE~LeVI~~~e~~wwLcRN--s~GkyGyVP~~yl~   95 (102)
T 1ri9_A           41 STKVTTSITSKKWGT-------RDLQVKPGESLEVIQTTDDTKVLCRN--EEGKYGYVLRSYLA   95 (102)
T ss_dssp             CCBCCTTSCSSCCCT-------TBCCCCTTCBCEEEEESSSSEEEEEE--TTTEEEEEEGGGSC
T ss_pred             EEEEeeccccccCCc-------ccCCcCCCCEEEEEEeCCCCEEEEEC--CCCCCCceeHHHhc
Confidence            46677776  22222       35889999999999999999999999  46899999998764

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=98.17  E-value=7.9e-07  Score=71.95  Aligned_cols=40  Identities=18%  Similarity=0.497  Sum_probs=35.4

Q ss_pred             ccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          69 YAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        69 ~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      .+|+|++||+|.|+++.+++||.|+.   +|+.|+||++....
T Consensus         6 ~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   45 (77)
T 2jmc_A            6 REVTMKKGDILTLLNSTNKDWWKVEV---NDRQGFVPAAYVKK   45 (77)
T ss_dssp             CCCCCCTTCEEECCCCCCSSCCCEEE---TTEEECCCGGGEEE
T ss_pred             CccCCCCCCEEEEEEecCCCEEEEEE---CCcEEEEEeeEEEE
Confidence            47999999999999999999999986   57899999987643

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=98.11  E-value=4.7e-05  Score=69.53  Aligned_cols=141  Identities=11%  Similarity=0.029  Sum_probs=79.2

Q ss_pred             EecCcCChHHHHHHHhcCCCCc-eeeecCCCchh---------hhh--hh-------------cccHHHHHHHHHcCCeE
Q psy6613         151 ITRVTADISLAKRSLMSNPSKR-AIMERSNSRSS---------VLT--EV-------------QTEIERVYELASTLQLV  205 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F-~~sVshTTR~p---------Fe~--~I-------------~TslesI~~vi~sGKi~  205 (510)
                      +|++|+||||+.+.|.+....+ .+.+.+.+|..         |..  .+             .+.++.|...+.+|+.|
T Consensus        10 ~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i~~~l~~~~~v   89 (204)
T 2v54_A           10 EGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFIQEQLEQGITL   89 (204)
T ss_dssp             ECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHHHHHHHTTCEE
T ss_pred             EcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence            8999999999999998832223 34455555422         110  00             02234566677899999


Q ss_pred             EEEeccC---------Cch---hHhhhcC-CCc-eEEEEeCCCHHHHHHHHHhcCCCcHH--HHHHHH-HHHHHHHhcCC
Q psy6613         206 VLDCDTI---------NHP---SQLAKTN-LSP-CIVYLKISSPKVLQRLIKSRGKSQTR--HLNVQM-VAAEKLAQCPQ  268 (510)
Q Consensus       206 ILDID~q---------g~~---lq~lks~-l~P-ivIFIkPPS~e~L~~rLr~Rgt~~~e--~i~kRL-~aa~eLEq~~~  268 (510)
                      |+|--+.         |..   +..+... ..| .+||+..|. +++.+   .|+.+..+  +..+|+ .+-.++...+ 
T Consensus        90 i~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~-e~~~~---~R~~d~~e~~~~~~rl~~~y~~~~~~~-  164 (204)
T 2v54_A           90 IVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGS-KEINR---NVGEEIYEDVTFQQKVLQEYKKMIEEG-  164 (204)
T ss_dssp             EEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCH-HHHTT---CCSSSTTCCSHHHHHHHHHHHHHHTTC-
T ss_pred             EEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCH-HHHHh---hcCcccccHHHHHHHHHHHHHHHHHhC-
Confidence            9993221         100   1222221 223 567777664 44444   45433222  566677 3344444433 


Q ss_pred             CCccEEEeC--CCHHHHHHHHHHHHHHHHHh
Q psy6613         269 EMFDVILDE--NQLEDACEHIAEYLEAYWRA  297 (510)
Q Consensus       269 ~~FD~VIvN--DdLd~A~~eL~~ileai~~a  297 (510)
                       ..++++++  .++++.++++.++|..++..
T Consensus       165 -~~~~~~Id~~~~~~~v~~~i~~~l~~~l~~  194 (204)
T 2v54_A          165 -DIHWQIISSEFEEDVKKELIKNIVIEAIHT  194 (204)
T ss_dssp             -SSCEEEECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             -CCcEEEEECCCCHHHHHHHHHHHHHHHHhh
Confidence             23544443  46999999999888877653

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=98.09  E-value=4.2e-07  Score=96.95  Aligned_cols=55  Identities=29%  Similarity=0.458  Sum_probs=0.0

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecC-CCceEEEEccCCCceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYD-SNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d-~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ...+||+|||.+..++       +|+|.+||+|.|++..+ ++||.|+..  .|..|+||+....
T Consensus       428 ~~~~~alydy~~~~~~-------eLsf~~Gd~i~vl~~~~~~~Ww~g~~~--~g~~G~~P~nyv~  483 (486)
T 3haj_A          428 EVRVRALYDYEGQEHD-------ELSFKAGDELTKMEDEDEQGWCKGRLD--NGQVGLYPANYVE  483 (486)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             CeEEEEccccCCCCCC-------cCccCCCCEEEEEEecCCCCeeEEEeC--CCCEEEEeHHHce
Confidence            4579999999999875       59999999999999874 599999973  3789999998764

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=98.09  E-value=1.6e-05  Score=71.49  Aligned_cols=139  Identities=12%  Similarity=0.074  Sum_probs=72.8

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCC----------chhhh---h---hh-----c----ccHHHHHHHH--HcC
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNS----------RSSVL---T---EV-----Q----TEIERVYELA--STL  202 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTT----------R~pFe---~---~I-----~----TslesI~~vi--~sG  202 (510)
                      +|++|+||||+.+.|.+ ... .++.+.|+.          |..+.   .   .+     .    ...+.|...+  ..|
T Consensus         7 ~G~~GsGKsT~~~~L~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~   85 (194)
T 1nks_A            7 TGIPGVGKSTVLAKVKEILDN-QGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEARAGGE   85 (194)
T ss_dssp             EECTTSCHHHHHHHHHHHHHT-TTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             ECCCCCCHHHHHHHHHHHHHh-cCceEEEEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHHHHHHhhccCC
Confidence            89999999999999987 331 122223331          11100   0   00     0    0112244555  789


Q ss_pred             CeEEEEe----ccC-C----chhHhhhcCCCceEEEEeCCCHHHHHHHHHh--cCC-C--cHHHH--HHHH-HHHHHHHh
Q psy6613         203 QLVVLDC----DTI-N----HPSQLAKTNLSPCIVYLKISSPKVLQRLIKS--RGK-S--QTRHL--NVQM-VAAEKLAQ  265 (510)
Q Consensus       203 Ki~ILDI----D~q-g----~~lq~lks~l~PivIFIkPPS~e~L~~rLr~--Rgt-~--~~e~i--~kRL-~aa~eLEq  265 (510)
                      +.||+|-    ..+ +    .....++....-.+||+..|.-..+++|+..  |+. +  ..+.+  ..++ ..-.++..
T Consensus        86 ~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~~rr~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (194)
T 1nks_A           86 GYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASA  165 (194)
T ss_dssp             SEEEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEECCchhhccccccccCCCHHHHHhcCCCEEEEEeCCHHHHHHHHHhhcccCCCCccCHHHHHHHHHHHHHHHHHHH
Confidence            9999995    333 1    0012333211246778877765566677777  765 2  23332  2334 32233332


Q ss_pred             cCCCCccEEEe-CCC--HHHHHHHHHHHH
Q psy6613         266 CPQEMFDVILD-ENQ--LEDACEHIAEYL  291 (510)
Q Consensus       266 ~~~~~FD~VIv-NDd--Ld~A~~eL~~il  291 (510)
                      .|. ..+++++ |++  ++++++++.++|
T Consensus       166 ~~~-~~~~~~I~d~~~~~e~v~~~I~~~l  193 (194)
T 1nks_A          166 VLA-GSTVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             HHH-TCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             Hhc-CCcEEEEeCCCCCHHHHHHHHHHHh
Confidence            221 2355666 665  888888887554

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=98.08  E-value=2.9e-06  Score=78.80  Aligned_cols=139  Identities=12%  Similarity=0.066  Sum_probs=81.0

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchhh--------------hhhhc----ccHHHHHHHHHc---CCeEEEEe
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSSV--------------LTEVQ----TEIERVYELAST---LQLVVLDC  209 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~pF--------------e~~I~----TslesI~~vi~s---GKi~ILDI  209 (510)
                      +||+|+||||+.+.|.+......+....+.|..+              .....    .-...+.+.+..   |+.+|+|-
T Consensus         6 ~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ildg   85 (216)
T 3fb4_A            6 MGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKGFLLDG   85 (216)
T ss_dssp             ECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTCEEEES
T ss_pred             ECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCcEEEeC
Confidence            8999999999999997721234444545555531              11101    112334444433   88999997


Q ss_pred             ccCCchhHh---hhc-----CCCc-eEEEEeCCCHHHHHHHHHhc---------------------------------CC
Q psy6613         210 DTINHPSQL---AKT-----NLSP-CIVYLKISSPKVLQRLIKSR---------------------------------GK  247 (510)
Q Consensus       210 D~qg~~lq~---lks-----~l~P-ivIFIkPPS~e~L~~rLr~R---------------------------------gt  247 (510)
                      -+..  ...   +..     ...| .+||+..| .+++.+|+..|                                 ..
T Consensus        86 ~p~~--~~~~~~l~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~~  162 (216)
T 3fb4_A           86 FPRT--VAQADALDSLLTDLGKKLDYVLNIKVE-QEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRID  162 (216)
T ss_dssp             CCCS--HHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECCGG
T ss_pred             CCCC--HHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccCCC
Confidence            6544  222   221     2235 56777665 58889999887                                 34


Q ss_pred             CcHHHHHHHH-HHHHHH---HhcCC-CCccEEEe-CCCHHHHHHHHHHHHH
Q psy6613         248 SQTRHLNVQM-VAAEKL---AQCPQ-EMFDVILD-ENQLEDACEHIAEYLE  292 (510)
Q Consensus       248 ~~~e~i~kRL-~aa~eL---Eq~~~-~~FD~VIv-NDdLd~A~~eL~~ile  292 (510)
                      ++.+.+.+|| ...++.   ...|. ....++|. +.++++.++++.++|.
T Consensus       163 d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~  213 (216)
T 3fb4_A          163 DKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLG  213 (216)
T ss_dssp             GSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHH
Confidence            5567788888 333322   22221 11235555 3578999998886664

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.07  E-value=1.8e-05  Score=72.71  Aligned_cols=141  Identities=13%  Similarity=0.065  Sum_probs=75.0

Q ss_pred             EecCcCChHHHHHHHhc-CCC-CceeeecCCCchh-------------hhh--hhc-------------ccHHHHHHHHH
Q psy6613         151 ITRVTADISLAKRSLMS-NPS-KRAIMERSNSRSS-------------VLT--EVQ-------------TEIERVYELAS  200 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~-~F~~sVshTTR~p-------------Fe~--~I~-------------TslesI~~vi~  200 (510)
                      .|++|+||||+.+.|.+ ... .+...   .+|.|             |..  .+.             ..++.|...+.
T Consensus        15 ~G~~GsGKsT~~~~L~~~l~~~~~~v~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~l~   91 (215)
T 1nn5_A           15 EGVDRAGKSTQSRKLVEALCAAGHRAE---LLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLIKEKLS   91 (215)
T ss_dssp             EESTTSSHHHHHHHHHHHHHHTTCCEE---EEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHcCCcEE---EeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999886 221 12211   11211             110  000             11235677778


Q ss_pred             cCCeEEEEecc---------C-CchhHhh---hcC--CCceEEEEeCCCHHHHHHHHHhcC-CCcHHHHHHHH-HHHHHH
Q psy6613         201 TLQLVVLDCDT---------I-NHPSQLA---KTN--LSPCIVYLKISSPKVLQRLIKSRG-KSQTRHLNVQM-VAAEKL  263 (510)
Q Consensus       201 sGKi~ILDID~---------q-g~~lq~l---ks~--l~PivIFIkPPS~e~L~~rLr~Rg-t~~~e~i~kRL-~aa~eL  263 (510)
                      +|+.||+|-..         + +.....+   ...  ..-++||+..| .+++.+|+..+. .....+...++ .+-.++
T Consensus        92 ~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~-~e~~~~Rl~r~~~~~~~~~~~~~~~~~~~~~  170 (215)
T 1nn5_A           92 QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQ-LADAAKRGAFGHERYENGAFQERALRCFHQL  170 (215)
T ss_dssp             TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECC-HHHHHHC-----CTTCSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence            99999999321         0 1001222   221  12367777765 677888875431 11123445555 333444


Q ss_pred             HhcCCCCcc-EEEe-CCCHHHHHHHHHHHHHHHHHh
Q psy6613         264 AQCPQEMFD-VILD-ENQLEDACEHIAEYLEAYWRA  297 (510)
Q Consensus       264 Eq~~~~~FD-~VIv-NDdLd~A~~eL~~ileai~~a  297 (510)
                      ...+  ..+ ++|. |.++++.++++.++++.++..
T Consensus       171 ~~~~--~~~~~~Id~~~~~e~~~~~i~~~l~~~l~~  204 (215)
T 1nn5_A          171 MKDT--TLNWKMVDASKSIEAVHEDIRVLSEDAIAT  204 (215)
T ss_dssp             TTCT--TSCEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhC--CCCEEEEECCCCHHHHHHHHHHHHHHHHhh
Confidence            4333  234 4444 357999999999888877654

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=98.02  E-value=2e-05  Score=71.48  Aligned_cols=139  Identities=9%  Similarity=0.107  Sum_probs=76.5

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCch------h----hhhhh-----------c-ccHHHHHHHHHcCCeEEE
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRS------S----VLTEV-----------Q-TEIERVYELASTLQLVVL  207 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~------p----Fe~~I-----------~-TslesI~~vi~sGKi~IL  207 (510)
                      +|++|+||||+.+.|.+ ... ..+......|.      +    +.+.+           . .-.+.|...+..|+.+|+
T Consensus        15 ~G~~GsGKsT~~~~La~~l~~-~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~vi~   93 (196)
T 2c95_A           15 VGGPGSGKGTQCEKIVQKYGY-THLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVNTSKGFLI   93 (196)
T ss_dssp             EECTTSSHHHHHHHHHHHHCC-EEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTTCSCEEE
T ss_pred             ECCCCCCHHHHHHHHHHHhCC-eEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccccCCcEEE
Confidence            99999999999999876 321 11211111221      1    00000           0 122344455568999999


Q ss_pred             EeccCCchhHhhh---c-CCCc-eEEEEeCCCHHHHHHHHHhcCC------CcHHHHHHHH-HHHHHHH---hcCCCCcc
Q psy6613         208 DCDTINHPSQLAK---T-NLSP-CIVYLKISSPKVLQRLIKSRGK------SQTRHLNVQM-VAAEKLA---QCPQEMFD  272 (510)
Q Consensus       208 DID~qg~~lq~lk---s-~l~P-ivIFIkPPS~e~L~~rLr~Rgt------~~~e~i~kRL-~aa~eLE---q~~~~~FD  272 (510)
                      |..+.+  ...++   . ...| ++||+.. +.+++.+|+..|+.      +..+.+.+|+ ....+.+   ..|.. .|
T Consensus        94 d~~~~~--~~~~~~~~~~~~~~~~vi~l~~-~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-~~  169 (196)
T 2c95_A           94 DGYPRE--VQQGEEFERRIGQPTLLLYVDA-GPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEK-RG  169 (196)
T ss_dssp             ESCCCS--HHHHHHHHHHTCCCSEEEEEEC-CHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHHHHH-HT
T ss_pred             eCCCCC--HHHHHHHHHhcCCCCEEEEEEC-CHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence            986665  33322   2 2234 5566655 67888888877753      2345556666 2222111   11211 23


Q ss_pred             --EEEeC-CCHHHHHHHHHHHHHHH
Q psy6613         273 --VILDE-NQLEDACEHIAEYLEAY  294 (510)
Q Consensus       273 --~VIvN-DdLd~A~~eL~~ileai  294 (510)
                        ++|.| .+++++++++..+++.+
T Consensus       170 ~~~~Id~~~~~e~v~~~i~~~l~~~  194 (196)
T 2c95_A          170 IVRKVNAEGSVDSVFSQVCTHLDAL  194 (196)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHHHHh
Confidence              34544 57899999998777543

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.95  E-value=6.9e-05  Score=73.96  Aligned_cols=94  Identities=12%  Similarity=0.029  Sum_probs=58.2

Q ss_pred             HcC-CeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEEEeCC
Q psy6613         200 STL-QLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDEN  278 (510)
Q Consensus       200 ~sG-Ki~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~VIvND  278 (510)
                      ..| .+||+|...-.  -..+. .+..++|||..| .+++.+|+..|+..+.+++..++......+..+ ...|+||.|+
T Consensus       178 ~~~~~~vIveg~~l~--~~~~~-~~~d~vI~l~a~-~ev~~~Rl~~R~g~s~e~~~~ri~~q~~~~~~~-~~AD~vIdn~  252 (281)
T 2f6r_A          178 AKGKTLCVIDAAMLL--EAGWQ-SMVHEVWTVVIP-ETEAVRRIVERDGLSEAAAQSRLQSQMSGQQLV-EQSNVVLSTL  252 (281)
T ss_dssp             HTTCCEEEEECTTTT--TTTGG-GGCSEEEEEECC-HHHHHHHHHHHHCCCHHHHHHHHHTSCCHHHHH-HTCSEEEECS
T ss_pred             ccCCCEEEEEechhh--ccchH-HhCCEEEEEcCC-HHHHHHHHHHcCCCCHHHHHHHHHHcCChHhhH-hhCCEEEECC
Confidence            344 68999976432  11111 223578999887 677777777664344566666662211111111 2469999987


Q ss_pred             -CHHHHHHHHHHHHHHHHHhc
Q psy6613         279 -QLEDACEHIAEYLEAYWRAT  298 (510)
Q Consensus       279 -dLd~A~~eL~~ileai~~a~  298 (510)
                       +++++++++..++..+....
T Consensus       253 ~s~eel~~~I~~~l~~l~~~~  273 (281)
T 2f6r_A          253 WESHVTQSQVEKAWNLLQKRL  273 (281)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHHHH
Confidence             79999999998888776443

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=97.92  E-value=9.1e-06  Score=69.61  Aligned_cols=54  Identities=22%  Similarity=0.394  Sum_probs=43.0

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecC--CCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYD--SNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d--~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      +.-.++|+++..+..+        .|+|++|++|+|+.+.+  ++||.+|+  ..|..|+||.+..
T Consensus        27 vl~~a~a~~~~k~g~~--------dLp~~~GE~LeII~~~e~p~g~Wl~RN--~~G~~GyVp~~~v   82 (96)
T 2gtj_A           27 VIHLAKACCDVKGGKN--------ELSFKQGEQIEIIRITDNPEGKWLGRT--ARGSYGYIKTTAV   82 (96)
T ss_dssp             CCEEEEESSCEECTTS--------CCEECTTCCEEEEECTTCSSSCCEEEC--TTCCBCCCCGGGE
T ss_pred             eEEEEEEeecCCCCcc--------cCCcCCCCEEEEEEccCCCCCeEEEEC--CCCCCCccchhhE
Confidence            4446899998444332        48899999999999976  56999998  4679999998874

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.91  E-value=1.5e-05  Score=71.09  Aligned_cols=131  Identities=12%  Similarity=0.072  Sum_probs=66.5

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchhhh---------------hhhc-ccHHHHHHHH---HcCCeEEEEec
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSSVL---------------TEVQ-TEIERVYELA---STLQLVVLDCD  210 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~pFe---------------~~I~-TslesI~~vi---~sGKi~ILDID  210 (510)
                      +||+|+||||+.+.|.+ ... +.+.-..+.|....               ..+. ...+.+...+   ..|+.+|+|..
T Consensus         8 ~G~~GsGKST~a~~L~~~~~~-~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~vi~d~~   86 (181)
T 1ly1_A            8 IGCPGSGKSTWAREFIAKNPG-FYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDT   86 (181)
T ss_dssp             ECCTTSSHHHHHHHHHHHSTT-EEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCEEEECSC
T ss_pred             ecCCCCCHHHHHHHHHhhcCC-cEEecHHHHHHHhhCCCccchhhhchhhhhHHHHHHHHHHHHHHhhccCCCeEEEeCC
Confidence            89999999999999987 443 22221222222210               0011 2335567777   88999999987


Q ss_pred             cCCch-hHhhh----c-CCCceEEEEeCCCHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhcCCCCccEEEeCCCH-H
Q psy6613         211 TINHP-SQLAK----T-NLSPCIVYLKISSPKVLQRLIKSRG--KSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQL-E  281 (510)
Q Consensus       211 ~qg~~-lq~lk----s-~l~PivIFIkPPS~e~L~~rLr~Rg--t~~~e~i~kRL~aa~eLEq~~~~~FD~VIvNDdL-d  281 (510)
                      ..+.. .+.++    . ....++||+. .+.+++.+|+..|+  ..+.+.+.+++..-++..     .+|..++|+++ +
T Consensus        87 ~~~~~~~~~l~~~~~~~~~~~~~i~l~-~~~~~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~-----~~~~~~id~~~~~  160 (181)
T 1ly1_A           87 NLNPERRLAWETFAKEYGWKVEHKVFD-VPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYL-----GLPVYNGTPGKPK  160 (181)
T ss_dssp             CCSHHHHHHHHHHHHHHTCEEEEEECC-CCHHHHHHHHTTCGGGCCCHHHHHHHHHHHHHHH-----TCCCC--------
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEEEe-CCHHHHHHHHhccccCCCCHHHHHHHHHHhhccC-----CCCccccCCCCCc
Confidence            75510 11122    1 2333678887 47899999998887  333444444444444332     23322256666 4


Q ss_pred             HHHHHHH
Q psy6613         282 DACEHIA  288 (510)
Q Consensus       282 ~A~~eL~  288 (510)
                      ..+..+.
T Consensus       161 ~v~~~i~  167 (181)
T 1ly1_A          161 AVIFDVD  167 (181)
T ss_dssp             -------
T ss_pred             eeeehhh
Confidence            4444444

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=97.90  E-value=1.5e-06  Score=87.29  Aligned_cols=57  Identities=9%  Similarity=0.081  Sum_probs=0.0

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      ..++||+|||.+..++     +.+|+|++||+|.|+++.+++||.|+.   +|+.|+||+...+.
T Consensus       247 ~~~a~alyd~~~~~~~-----~~ELs~~~Gd~i~v~~~~~~~ww~g~~---~g~~G~fP~~yv~~  303 (308)
T 3qwy_A          247 PAKAKVTFDRVPNAYD-----PTQLRVKKGQTVLVTQKMSNGMYKAEL---DGQIGSVPHTYLRF  303 (308)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             ccccccccccccccCC-----cccceeCCCCEEEEEEEcCCCcEEEEE---CCeeEEechHHeEE
Confidence            4578999999765432     237999999999999998899999887   57899999987654

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.90  E-value=3.2e-05  Score=69.54  Aligned_cols=91  Identities=14%  Similarity=0.170  Sum_probs=47.6

Q ss_pred             cCCeEEEEeccC-----Cc----hhHhhhcCCCceEEEEeCCCHHHHHHHHHh--cCC--CcHHHHHHHHHHH---HHHH
Q psy6613         201 TLQLVVLDCDTI-----NH----PSQLAKTNLSPCIVYLKISSPKVLQRLIKS--RGK--SQTRHLNVQMVAA---EKLA  264 (510)
Q Consensus       201 sGKi~ILDID~q-----g~----~lq~lks~l~PivIFIkPPS~e~L~~rLr~--Rgt--~~~e~i~kRL~aa---~eLE  264 (510)
                      .+..||+|....     +.    +...++.....++|||.+|.-..+++|+..  |+.  ...+.+..+....   .+..
T Consensus        83 ~~~~viid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~~~~~~~~~~~~~~~~~~~~  162 (192)
T 1kht_A           83 KESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSY  162 (192)
T ss_dssp             TTSCEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEccceeccccccccccCcHHHHhccCCCEEEEEeCCHHHHHHHHhhhcccCCCcCCHHHHHHHHHHHHHHHHHH
Confidence            566888886431     10    003333311246888888754444458866  543  3333333232111   1111


Q ss_pred             hcCCCCccEEEeCCC--HHHHHHHHHHHH
Q psy6613         265 QCPQEMFDVILDENQ--LEDACEHIAEYL  291 (510)
Q Consensus       265 q~~~~~FD~VIvNDd--Ld~A~~eL~~il  291 (510)
                      ..|....+++|.|.+  ++++++++.++|
T Consensus       163 ~~~~~~~~~~i~~~~~~~e~~~~~i~~~i  191 (192)
T 1kht_A          163 GVLTGATVKIVQNRNGLLDQAVEELTNVL  191 (192)
T ss_dssp             HHHHCCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             HHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence            122234456667888  999999988654

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.89  E-value=1.2e-05  Score=72.59  Aligned_cols=139  Identities=14%  Similarity=0.084  Sum_probs=70.3

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeec------CCC-chhhhhh---hc--ccHHHHHHHHHcCCeEEEEecc---CC-
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMER------SNS-RSSVLTE---VQ--TEIERVYELASTLQLVVLDCDT---IN-  213 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVs------hTT-R~pFe~~---I~--TslesI~~vi~sGKi~ILDID~---qg-  213 (510)
                      +||+|+||||+.+.|.+ ..-.|.-.-.      ..+ ...|+..   ..  ...+.+..+... ..+|+.+..   .. 
T Consensus        11 ~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~vi~~gg~~~~~~   89 (185)
T 3trf_A           11 IGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKL-DNIILATGGGVVLDE   89 (185)
T ss_dssp             ECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHS-SSCEEECCTTGGGSH
T ss_pred             ECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCChhhHHHHhCHHHHHHHHHHHHHHHHhc-CCcEEecCCceecCH
Confidence            99999999999999876 2211211100      000 0001110   00  122334554444 445555531   11 


Q ss_pred             chhHhhhcCCCceEEEEeCCCHHHHHHHH--Hh---cCCCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCCC--HHHHHH
Q psy6613         214 HPSQLAKTNLSPCIVYLKISSPKVLQRLI--KS---RGKSQTRHLNVQM-VAAEKLAQCPQEMFDVILDENQ--LEDACE  285 (510)
Q Consensus       214 ~~lq~lks~l~PivIFIkPPS~e~L~~rL--r~---Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvNDd--Ld~A~~  285 (510)
                      ...+.++.  ..++||+.+| .+++.+|+  +.   |+.........++ ..-.+-+..|...+|++|.+++  ++++++
T Consensus        90 ~~~~~l~~--~~~vi~L~~~-~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~r~~~y~~~ad~~Idt~~~~~~e~~~  166 (185)
T 3trf_A           90 KNRQQISE--TGVVIYLTAS-IDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLYQAMADLVYPTDDLNPRQLAT  166 (185)
T ss_dssp             HHHHHHHH--HEEEEEEECC-HHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHHHHHHHHHHCSEEEECTTCCHHHHHH
T ss_pred             HHHHHHHh--CCcEEEEECC-HHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCEEEECCCCCHHHHHH
Confidence            00122222  2377888775 88999999  33   3333333223333 1111111222245799999876  899988


Q ss_pred             HHHHHHHH
Q psy6613         286 HIAEYLEA  293 (510)
Q Consensus       286 eL~~ilea  293 (510)
                      ++.+++..
T Consensus       167 ~I~~~l~~  174 (185)
T 3trf_A          167 QILVDIKQ  174 (185)
T ss_dssp             HHHHHSCC
T ss_pred             HHHHHHHH
Confidence            88866543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.88  E-value=0.0002  Score=64.14  Aligned_cols=136  Identities=15%  Similarity=0.199  Sum_probs=72.4

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCC-Cch------h----hhh-hh---cccHH-HHHHHHHcCCeEEEEeccCC
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSN-SRS------S----VLT-EV---QTEIE-RVYELASTLQLVVLDCDTIN  213 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshT-TR~------p----Fe~-~I---~Tsle-sI~~vi~sGKi~ILDID~qg  213 (510)
                      +||+|+||||+.+.|.. ..  +.+.-... .+.      .    +.. ..   .+.++ .+..++..|..+|+|...-.
T Consensus        14 ~G~~GsGKSTl~~~l~~~~g--~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~   91 (175)
T 1knq_A           14 MGVSGSGKSAVASEVAHQLH--AAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALK   91 (175)
T ss_dssp             ECSTTSCHHHHHHHHHHHHT--CEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEECCCCS
T ss_pred             EcCCCCCHHHHHHHHHHhhC--cEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHHHHHhcCCcEEEEeCchH
Confidence            99999999999998865 21  11111111 010      0    000 00   02222 23445567999999975322


Q ss_pred             -chhHhhhcCC-CceEEEEeCCCHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHhc-CCCCccEEEeCC-CHHHHHHHHH
Q psy6613         214 -HPSQLAKTNL-SPCIVYLKISSPKVLQRLIKSRGKSQT-RHLNVQMVAAEKLAQC-PQEMFDVILDEN-QLEDACEHIA  288 (510)
Q Consensus       214 -~~lq~lks~l-~PivIFIkPPS~e~L~~rLr~Rgt~~~-e~i~kRL~aa~eLEq~-~~~~FD~VIvND-dLd~A~~eL~  288 (510)
                       ...+.++... ..++||+.. +.+++.+|+..|+.... .....  .....++.. |....|++|.|+ ++++..+++.
T Consensus        92 ~~~~~~l~~~~~~~~vv~l~~-~~e~~~~R~~~R~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Id~~~~~~~~~~~i~  168 (175)
T 1knq_A           92 KHYRDLLREGNPNLSFIYLKG-DFDVIESRLKARKGHFFKTQMLV--TQFETLQEPGADETDVLVVDIDQPLEGVVASTI  168 (175)
T ss_dssp             HHHHHHHHTTCTTEEEEEEEC-CHHHHHHHHHTSTTCCCCHHHHH--HHHHHCCCCCTTCTTEEEEECSSCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEEEEC-CHHHHHHHHHhccCCCCchHHHH--HHHHhhhCcccCCCCeEEEeCCCCHHHHHHHHH
Confidence             0123333322 337888886 57899999988864321 11111  111122222 344568888775 5777777777


Q ss_pred             HHH
Q psy6613         289 EYL  291 (510)
Q Consensus       289 ~il  291 (510)
                      +++
T Consensus       169 ~~l  171 (175)
T 1knq_A          169 EVI  171 (175)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.87  E-value=5.5e-05  Score=67.88  Aligned_cols=139  Identities=7%  Similarity=0.100  Sum_probs=73.6

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh--------------hhhhhc----ccHHHHHHHHH--cCCeEEEEe
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS--------------VLTEVQ----TEIERVYELAS--TLQLVVLDC  209 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p--------------Fe~~I~----TslesI~~vi~--sGKi~ILDI  209 (510)
                      +|++|+||||+.+.|.+ .. ...+......|..              |.....    .....+.+.+.  .|+.+|+|-
T Consensus        12 ~G~~GsGKsT~~~~L~~~l~-~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~vi~d~   90 (194)
T 1qf9_A           12 LGGPGSGKGTQCANIVRDFG-WVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQGKNFLVDG   90 (194)
T ss_dssp             EESTTSSHHHHHHHHHHHHC-CEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTSTTCCEEEET
T ss_pred             ECCCCCCHHHHHHHHHHHhC-CeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcCCCCEEEeC
Confidence            89999999999999876 33 2222221122211              110000    11233344443  688999997


Q ss_pred             ccCCch-hHhh----hcCCCc-eEEEEeCCCHHHHHHHHHhcCC------CcHHHHHHHHHH-HH---HHHhcCCCCcc-
Q psy6613         210 DTINHP-SQLA----KTNLSP-CIVYLKISSPKVLQRLIKSRGK------SQTRHLNVQMVA-AE---KLAQCPQEMFD-  272 (510)
Q Consensus       210 D~qg~~-lq~l----ks~l~P-ivIFIkPPS~e~L~~rLr~Rgt------~~~e~i~kRL~a-a~---eLEq~~~~~FD-  272 (510)
                      .+.... .+.+    +....| ++|||. .+.+++.+|+..|+.      +..+.+.+|+.. ..   .+...| ..+| 
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~vi~l~-~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~~-~~~~~  168 (194)
T 1qf9_A           91 FPRNEENNNSWEENMKDFVDTKFVLFFD-CPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHY-NKFDK  168 (194)
T ss_dssp             CCCSHHHHHHHHHHHTTTCEEEEEEEEE-CCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHH-HHTTC
T ss_pred             cCCCHHHHHHHHHHHhccCCCCEEEEEE-CCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHH-HhCCC
Confidence            655400 1122    112234 345555 568888888877643      224566677732 21   111122 1245 


Q ss_pred             -EEEeC-CCHHHHHHHHHHHHH
Q psy6613         273 -VILDE-NQLEDACEHIAEYLE  292 (510)
Q Consensus       273 -~VIvN-DdLd~A~~eL~~ile  292 (510)
                       ++|.| .++++.++++.++++
T Consensus       169 ~~~id~~~~~~~~~~~i~~~l~  190 (194)
T 1qf9_A          169 VKIIPANRDVNEVYNDVENLFK  190 (194)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHH
Confidence             55655 478888888886664

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.86  E-value=7e-05  Score=69.23  Aligned_cols=140  Identities=14%  Similarity=0.123  Sum_probs=74.5

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecC-CCc------hhhhhh----hc-ccHHHHHHHHHcCCeEEEEeccCC----
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERS-NSR------SSVLTE----VQ-TEIERVYELASTLQLVVLDCDTIN----  213 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVsh-TTR------~pFe~~----I~-TslesI~~vi~sGKi~ILDID~qg----  213 (510)
                      +||+|+||||+.+.|.+ ..-.|.-.-.. ..+      ..|...    .. ...+.+..+ ..+..+|+++..-.    
T Consensus        31 ~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g~~i~~~~~~~~~~~~~~~e~~~l~~l-~~~~~~vi~~ggg~~~~~  109 (199)
T 3vaa_A           31 TGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKTVGELFTERGEAGFRELERNMLHEV-AEFENVVISTGGGAPCFY  109 (199)
T ss_dssp             ECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSEEEECCTTGGGST
T ss_pred             EcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhCCcHHHHHHhcChHHHHHHHHHHHHHH-hhcCCcEEECCCcEEccH
Confidence            99999999999999886 32112110000 000      001110    00 122233333 35677788853211    


Q ss_pred             chhHhhhcCCCceEEEEeCCCHHHHHHHHH-hc---C---CCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCCC--HHHH
Q psy6613         214 HPSQLAKTNLSPCIVYLKISSPKVLQRLIK-SR---G---KSQTRHLNVQM-VAAEKLAQCPQEMFDVILDENQ--LEDA  283 (510)
Q Consensus       214 ~~lq~lks~l~PivIFIkPPS~e~L~~rLr-~R---g---t~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvNDd--Ld~A  283 (510)
                      ...+.++.  ..++||+.. +.+++.+|+. .+   .   ....+++..++ ..-.+.+..|.. .|++|.+++  .+++
T Consensus       110 ~~~~~l~~--~~~vi~L~~-~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~~y~~-ad~~Idt~~~s~ee~  185 (199)
T 3vaa_A          110 DNMEFMNR--TGKTVFLNV-HPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRAPFYTQ-AQYIFNADELEDRWQ  185 (199)
T ss_dssp             THHHHHHH--HSEEEEEEC-CHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHHHHTT-SSEEEECCCCSSHHH
T ss_pred             HHHHHHHc--CCEEEEEEC-CHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHhh-CCEEEECCCCCHHHH
Confidence            00112221  346777765 5788888887 33   1   22333444444 222223333444 899998875  8999


Q ss_pred             HHHHHHHHHHHH
Q psy6613         284 CEHIAEYLEAYW  295 (510)
Q Consensus       284 ~~eL~~ileai~  295 (510)
                      ++++.++|+.++
T Consensus       186 ~~~I~~~l~~~l  197 (199)
T 3vaa_A          186 IESSVQRLQELL  197 (199)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999998887664

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.85  E-value=0.0001  Score=66.56  Aligned_cols=91  Identities=12%  Similarity=0.106  Sum_probs=51.2

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh--h-------hhhhc---ccHHHHHHHHHcCCeEEEEeccCCchhH
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS--V-------LTEVQ---TEIERVYELASTLQLVVLDCDTINHPSQ  217 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p--F-------e~~I~---TslesI~~vi~sGKi~ILDID~qg~~lq  217 (510)
                      +|++|+||||+.+.|.+ ..- ..+......+..  |       ...+.   .-++.+..++..|..+| |..  +  ..
T Consensus        17 ~G~~GsGKst~~~~l~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vv-~~~--~--~~   90 (180)
T 3iij_A           17 TGTPGVGKTTLGKELASKSGL-KYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREGGVIV-DYH--G--CD   90 (180)
T ss_dssp             ECSTTSSHHHHHHHHHHHHCC-EEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHHHHHHHHCCEEE-ECS--C--CT
T ss_pred             EeCCCCCHHHHHHHHHHHhCC-eEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHHHHHHhcCCEEE-Eec--h--hh
Confidence            99999999999998876 221 111111111111  0       00000   13455666777886653 433  3  23


Q ss_pred             hhhcCCCceEEEEeCCCHHHHHHHHHhcCCC
Q psy6613         218 LAKTNLSPCIVYLKISSPKVLQRLIKSRGKS  248 (510)
Q Consensus       218 ~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~  248 (510)
                      .+......++||+.+ +.+++.+|+..|+..
T Consensus        91 ~~~~~~~~~vi~L~~-~~e~l~~R~~~r~~~  120 (180)
T 3iij_A           91 FFPERWFHIVFVLRT-DTNVLYERLETRGYN  120 (180)
T ss_dssp             TSCGGGCSEEEEEEC-CHHHHHHHHHHTTCC
T ss_pred             hcchhcCCEEEEEEC-CHHHHHHHHHHcCCC
Confidence            333322346666655 689999999998754

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.83  E-value=6.1e-05  Score=68.37  Aligned_cols=141  Identities=8%  Similarity=-0.007  Sum_probs=74.1

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCch-h-------------hhh-------hhc-ccHHHHHHHHHcCCeEEE
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRS-S-------------VLT-------EVQ-TEIERVYELASTLQLVVL  207 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~-p-------------Fe~-------~I~-TslesI~~vi~sGKi~IL  207 (510)
                      +|++|+||||+.+.|.+ .. ...+......|. +             |..       .+. .-.+.|...+..|..+|+
T Consensus        18 ~G~~GsGKsT~a~~L~~~l~-~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~vi~   96 (199)
T 2bwj_A           18 IGGPGSGKGTQCEKLVEKYG-FTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGDTRGFLI   96 (199)
T ss_dssp             EECTTSSHHHHHHHHHHHHT-CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTSCSCEEE
T ss_pred             ECCCCCCHHHHHHHHHHHhC-CeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcccccCccEEE
Confidence            99999999999999887 32 111111111111 0             100       000 111223333447899999


Q ss_pred             EeccCCc-hhHhhhcC--CCceEEEEeCCCHHHHHHHHHhcCCC------cHHHHHHHH-HHHHHHH---hcCCCCcc--
Q psy6613         208 DCDTINH-PSQLAKTN--LSPCIVYLKISSPKVLQRLIKSRGKS------QTRHLNVQM-VAAEKLA---QCPQEMFD--  272 (510)
Q Consensus       208 DID~qg~-~lq~lks~--l~PivIFIkPPS~e~L~~rLr~Rgt~------~~e~i~kRL-~aa~eLE---q~~~~~FD--  272 (510)
                      |--+... ....+...  ..-++|||..| .+++.+|+..|+..      ..+.+.+|+ ..-.+.+   ..|. ..+  
T Consensus        97 dg~~~~~~~~~~l~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~  174 (199)
T 2bwj_A           97 DGYPREVKQGEEFGRRIGDPQLVICMDCS-ADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYE-TKTQL  174 (199)
T ss_dssp             ETCCSSHHHHHHHHHHTCCCSEEEEEECC-HHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSEE
T ss_pred             eCCCCCHHHHHHHHHhcCCCCEEEEEECC-HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCCE
Confidence            9544330 01122222  23378888874 78888999888652      123455555 2222221   1121 123  


Q ss_pred             EEEeC-CCHHHHHHHHHHHHHHH
Q psy6613         273 VILDE-NQLEDACEHIAEYLEAY  294 (510)
Q Consensus       273 ~VIvN-DdLd~A~~eL~~ileai  294 (510)
                      ++|.| .+++++++++.++++.+
T Consensus       175 ~~id~~~~~e~v~~~i~~~l~~~  197 (199)
T 2bwj_A          175 HKINAEGTPEDVFLQLCTAIDSI  197 (199)
T ss_dssp             EEEETTSCHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHHHHh
Confidence            44443 36899999998777543

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.82  E-value=0.00023  Score=65.46  Aligned_cols=144  Identities=13%  Similarity=0.079  Sum_probs=77.8

Q ss_pred             CCCCCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh----------hhhhhc----ccH----HHHHHHH---
Q psy6613         144 PSPGMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS----------VLTEVQ----TEI----ERVYELA---  199 (510)
Q Consensus       144 Ps~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p----------Fe~~I~----Tsl----esI~~vi---  199 (510)
                      +..+.+|  +|++|+||||+.+.|.+ ... ..+......|..          +.+.+.    ...    ..+.+.+   
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~-~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~   95 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGI-PQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNP   95 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHHTC-CEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCC-cEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhcc
Confidence            3344444  89999999999999887 321 122222222321          000000    111    2222222   


Q ss_pred             HcCCeEEEEeccCCchh------Hhhhc-CCCc-eEEEEeCCCHHHHHHHHHhcCC--CcHHHHHHHHHHHH-H---HHh
Q psy6613         200 STLQLVVLDCDTINHPS------QLAKT-NLSP-CIVYLKISSPKVLQRLIKSRGK--SQTRHLNVQMVAAE-K---LAQ  265 (510)
Q Consensus       200 ~sGKi~ILDID~qg~~l------q~lks-~l~P-ivIFIkPPS~e~L~~rLr~Rgt--~~~e~i~kRL~aa~-e---LEq  265 (510)
                      ..|..+|+|..+.+ ..      +.++. ...| ++||+..| .+++.+|+..|+.  +..+.+.+|+..-. +   +..
T Consensus        96 ~~~~~vIldg~~~~-~~~~~~l~~~l~~~~~~~~~vi~l~~~-~e~~~~Rl~~R~r~~~~~e~~~~r~~~~~~~~~~~~~  173 (201)
T 2cdn_A           96 DAANGFILDGYPRS-VEQAKALHEMLERRGTDIDAVLEFRVS-EEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLE  173 (201)
T ss_dssp             GGTTCEEEESCCCS-HHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHH
T ss_pred             cCCCeEEEECCCCC-HHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhHHHHH
Confidence            24778999976654 11      12222 2334 67777764 6788888887753  34555666663222 2   223


Q ss_pred             cCCCCccEEEeCC-CHHHHHHHHHHHH
Q psy6613         266 CPQEMFDVILDEN-QLEDACEHIAEYL  291 (510)
Q Consensus       266 ~~~~~FD~VIvND-dLd~A~~eL~~il  291 (510)
                      .| ...+++|.|+ ++++.++++.++|
T Consensus       174 ~~-~~~~~~Id~~~~~eev~~~I~~~l  199 (201)
T 2cdn_A          174 YY-RDQLKTVDAVGTMDEVFARALRAL  199 (201)
T ss_dssp             HT-TTTEEEEECCSCHHHHHHHHHHHT
T ss_pred             Hh-cCcEEEEeCCCCHHHHHHHHHHHH
Confidence            33 3457777664 6888888887544

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=97.76  E-value=2.2e-05  Score=87.01  Aligned_cols=65  Identities=17%  Similarity=0.166  Sum_probs=48.5

Q ss_pred             HHHHHHHhhhccCCCeeEEEEeeccCCC--CCCCCCCCCccccccCCceEEEEee-----cCCCceEEEEccCCCceeee
Q psy6613          32 RQALSQLEKARAKNVAFAVRTNVKYDGS--IDDDSPVHGYAVSFDIHEFLHIKEK-----YDSNWWIGRLVKEGSECGFI  104 (510)
Q Consensus        32 ~~a~~~L~~a~~k~~~~~VRAlfdY~~~--~D~~iPc~e~~LsF~~GDiL~V~~~-----~d~~WWqar~v~~~~~~GlI  104 (510)
                      ......|.+     .+.|++|+|||...  +|      ...|+|++||+|.+++.     .+++||.|++.. +|+.|+|
T Consensus       563 ~~yi~~Lk~-----rs~~~~Al~d~~~~~~~~------~~~L~f~kGDlI~l~~~~~~~~~~~~W~~G~~~~-~g~~G~f  630 (655)
T 3pvl_A          563 VTFLEGLRK-----RSKYVVALQDNPNPAGEE------SGFLSFAKGDLIILDHDTGEQVMNSGWANGINER-TKQRGDF  630 (655)
T ss_dssp             HHHHHHHHH-----HCCEEEESSCCCC-----------CCBCCCCTTCEEEESSCCHHHHHHSSEEEEEETT-TCCEEEE
T ss_pred             HHHHHHHhh-----cchhhhHHhhcccCCCCC------CCcccccCCCEEEEccccCcccCCCCeEEEEeCC-CCceEEe
Confidence            344455544     36799999999832  22      24699999999999998     578999999743 5799999


Q ss_pred             cChh
Q psy6613         105 PSPV  108 (510)
Q Consensus       105 PS~~  108 (510)
                      |+..
T Consensus       631 P~~~  634 (655)
T 3pvl_A          631 PTDC  634 (655)
T ss_dssp             EGGG
T ss_pred             Ehhh
Confidence            9764

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.75  E-value=7.3e-05  Score=72.83  Aligned_cols=147  Identities=18%  Similarity=0.166  Sum_probs=84.1

Q ss_pred             CCCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh--------hhhh---------hc-------------cc-
Q psy6613         146 PGMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS--------VLTE---------VQ-------------TE-  191 (510)
Q Consensus       146 ~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p--------Fe~~---------I~-------------Ts-  191 (510)
                      .+.+|  .|++|+||||+.+.|.+ .. ..++.+..+||.|        +.+.         +.             .. 
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~  104 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLV  104 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHH
Confidence            45555  89999999999999877 22 1223323456655        1111         10             11 


Q ss_pred             HHHHHHHHHcCCeEEEE------eccCCch----hHh---hhc----CCCc-eEEEEeCCCHHHHHHHHHhcCC-Cc---
Q psy6613         192 IERVYELASTLQLVVLD------CDTINHP----SQL---AKT----NLSP-CIVYLKISSPKVLQRLIKSRGK-SQ---  249 (510)
Q Consensus       192 lesI~~vi~sGKi~ILD------ID~qg~~----lq~---lks----~l~P-ivIFIkPPS~e~L~~rLr~Rgt-~~---  249 (510)
                      .+.|...+++|++||+|      +-.|+..    .+.   +..    .+.| .+||+..| .+++.+|+..|+. +.   
T Consensus       105 ~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~-~e~~~~Ri~~R~~~dr~E~  183 (236)
T 3lv8_A          105 ENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDID-PKLGLERARGRGELDRIEK  183 (236)
T ss_dssp             HHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHC-----CCCTTTT
T ss_pred             HHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhcCCcchhhh
Confidence            23466677899999999      4444410    111   111    2455 45666655 6889999888863 11   


Q ss_pred             -HHHHHHHH-HHHHHHHhcCCCCccEEEe-CCCHHHHHHHHHHHHHHHHH
Q psy6613         250 -TRHLNVQM-VAAEKLAQCPQEMFDVILD-ENQLEDACEHIAEYLEAYWR  296 (510)
Q Consensus       250 -~e~i~kRL-~aa~eLEq~~~~~FD~VIv-NDdLd~A~~eL~~ileai~~  296 (510)
                       ..+...|+ ++-.++...++.  ..+|. +.++++..+++.++|+.++.
T Consensus       184 ~~~~~~~rv~~~y~~la~~~~~--~~vIDa~~sieeV~~~I~~~l~~~l~  231 (236)
T 3lv8_A          184 MDISFFERARERYLELANSDDS--VVMIDAAQSIEQVTADIRRALQDWLS  231 (236)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCTT--EEEEETTSCHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHCCC--EEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence             13556667 444566665544  34443 47799999999988877653

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.74  E-value=0.00033  Score=63.89  Aligned_cols=139  Identities=13%  Similarity=0.098  Sum_probs=74.9

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh--------hhhh-----hc--------------ccHHHHHHHHHcC
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS--------VLTE-----VQ--------------TEIERVYELASTL  202 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p--------Fe~~-----I~--------------TslesI~~vi~sG  202 (510)
                      .|++|+||||+.+.|.+ ......+ +  .++.|        +...     ..              .-.+.|...+..|
T Consensus        10 ~G~~GsGKsT~~~~L~~~l~~~g~~-~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~~l~~g   86 (213)
T 2plr_A           10 EGIDGSGKSSQATLLKDWIELKRDV-Y--LTEWNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRYERYILPMLKSG   86 (213)
T ss_dssp             ECCTTSSHHHHHHHHHHHHTTTSCE-E--EEETTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred             EcCCCCCHHHHHHHHHHHHhhcCCE-E--EecCCcHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            89999999999999987 3321111 1  11221        1110     00              0012234556789


Q ss_pred             CeEEEEeccCCch------------hHhhhc-CCCc-eEEEEeCCCHHHHHHHHH-hcCC-Cc-------------H---
Q psy6613         203 QLVVLDCDTINHP------------SQLAKT-NLSP-CIVYLKISSPKVLQRLIK-SRGK-SQ-------------T---  250 (510)
Q Consensus       203 Ki~ILDID~qg~~------------lq~lks-~l~P-ivIFIkPPS~e~L~~rLr-~Rgt-~~-------------~---  250 (510)
                      +.||+|-.+..+.            +..+.. ...| ++||+..| .+++.+|+. .|+. +.             .   
T Consensus        87 ~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~-~e~~~~Rl~~~R~~~~~~~~g~~~~~~~d~~e~~  165 (213)
T 2plr_A           87 FIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVS-PDIALERIKKSKRKIKPQEAGADIFPGLSPEEGF  165 (213)
T ss_dssp             CEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECC-HHHHHHHHHHTTCCCCTTTTTTTTCTTSCHHHHH
T ss_pred             CEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHhcccccccccccccccccccchhhhH
Confidence            9999997542200            111222 1123 56777764 688888888 7763 11             1   


Q ss_pred             HHHHHHH-HHHHHHHhcCCCCccEEEeC-CCHHHHHHHHHHHHHHHHH
Q psy6613         251 RHLNVQM-VAAEKLAQCPQEMFDVILDE-NQLEDACEHIAEYLEAYWR  296 (510)
Q Consensus       251 e~i~kRL-~aa~eLEq~~~~~FD~VIvN-DdLd~A~~eL~~ileai~~  296 (510)
                      +...+++ ..-.++...   .-+++|.+ .++++.++++.++|..++.
T Consensus       166 ~~~~~r~~~~~~~~~~~---~~~~~Id~~~~~e~v~~~I~~~l~~~~~  210 (213)
T 2plr_A          166 LKYQGLITEVYDKLVKD---ENFIVIDGTKTPKEIQIQIRKFVGELID  210 (213)
T ss_dssp             HHHHHHHHHHHHHHTTT---TTCEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh---CCEEEEECCCCHHHHHHHHHHHHHHHhh
Confidence            2334444 222233222   23466654 3688889999888776554

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.73  E-value=0.00012  Score=69.88  Aligned_cols=146  Identities=15%  Similarity=0.141  Sum_probs=83.7

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------hhh-----hhc-------------cc-HH
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------VLT-----EVQ-------------TE-IE  193 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------Fe~-----~I~-------------Ts-le  193 (510)
                      +.+|  .|++|+||||+.+.|.+ .. ..++.+ .+||.|           +..     .+.             .. .+
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~l~-~~~~~v-~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~   83 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAERLR-ERGIEV-QLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAG   83 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH-TTTCCE-EEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCc-ccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            4444  89999999999999877 22 122223 245555           110     010             11 23


Q ss_pred             HHHHHHHcCCeEEEEe------ccCC----chhHhh---hc----CCCce-EEEEeCCCHHHHHHHHHhcCC-Cc----H
Q psy6613         194 RVYELASTLQLVVLDC------DTIN----HPSQLA---KT----NLSPC-IVYLKISSPKVLQRLIKSRGK-SQ----T  250 (510)
Q Consensus       194 sI~~vi~sGKi~ILDI------D~qg----~~lq~l---ks----~l~Pi-vIFIkPPS~e~L~~rLr~Rgt-~~----~  250 (510)
                      .|...+++|++||+|=      -.|+    ...+.+   ..    .+.|- +||+.. +.+++.+|+..|+. +.    .
T Consensus        84 ~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~-~~e~~~~Ri~~R~~~dr~E~~~  162 (213)
T 4edh_A           84 VIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDL-PVEIGLARAAARGRLDRFEQED  162 (213)
T ss_dssp             THHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEEC-CHHHHHHHHCCCSSCCTTTTSC
T ss_pred             HHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeC-CHHHHHHHHHhcCCcCcccccH
Confidence            3566678999999993      2232    001211   11    24564 555555 48999999988863 21    1


Q ss_pred             HHHHHHH-HHHHHHHhcCCCCccEEEe-CCCHHHHHHHHHHHHHHHHH
Q psy6613         251 RHLNVQM-VAAEKLAQCPQEMFDVILD-ENQLEDACEHIAEYLEAYWR  296 (510)
Q Consensus       251 e~i~kRL-~aa~eLEq~~~~~FD~VIv-NDdLd~A~~eL~~ileai~~  296 (510)
                      .+..+++ +.-.++...++.. -++|. +.++++..+++.++|+.++.
T Consensus       163 ~~~~~rv~~~y~~l~~~~~~~-~~vIDa~~s~eeV~~~I~~~l~~~l~  209 (213)
T 4edh_A          163 RRFFEAVRQTYLQRAAQAPER-YQVLDAGLPLAEVQAGLDRLLPNLLE  209 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTT-EEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCc-EEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            3455566 4445565555432 23443 46799999998888776653

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.71  E-value=0.0002  Score=64.88  Aligned_cols=67  Identities=21%  Similarity=0.297  Sum_probs=40.9

Q ss_pred             eEEEEeCCCHHHHHHHHHhcCCCcHH----HHHHHH-HHHHHHHhcCC-CCccEEEeCC-CHHHHHHHHHHHHHH
Q psy6613         226 CIVYLKISSPKVLQRLIKSRGKSQTR----HLNVQM-VAAEKLAQCPQ-EMFDVILDEN-QLEDACEHIAEYLEA  293 (510)
Q Consensus       226 ivIFIkPPS~e~L~~rLr~Rgt~~~e----~i~kRL-~aa~eLEq~~~-~~FD~VIvND-dLd~A~~eL~~ilea  293 (510)
                      ++||+..| .+++.+|+..|+.....    +...++ ..-.++...|. ..-|++|.++ ++++.++++.+++..
T Consensus       127 ~vi~L~~~-~e~~~~Rl~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~  200 (205)
T 2jaq_A          127 IVIYLRVS-TKTAISRIKKRGRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAELDVKTQIELIMNKLNS  200 (205)
T ss_dssp             EEEEEECC-HHHHHHHHHHHTCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEeCC-HHHHHHHHHHcCChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCCCHHHHHHHHHHHHHH
Confidence            67888886 77888888777643221    334455 33333333332 3457888765 688888888866654

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.71  E-value=6.8e-05  Score=77.15  Aligned_cols=93  Identities=16%  Similarity=0.054  Sum_probs=60.4

Q ss_pred             EecCcCChHHHHHHHhc-CCC--------CceeeecCCCchh-----------------h-hhhhc------ccHHHHHH
Q psy6613         151 ITRVTADISLAKRSLMS-NPS--------KRAIMERSNSRSS-----------------V-LTEVQ------TEIERVYE  197 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~--------~F~~sVshTTR~p-----------------F-e~~I~------TslesI~~  197 (510)
                      +||+|+|||||...|.+ .+.        .+...++.||++|                 + .+.+.      ...+.|.+
T Consensus        46 ~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~a~~~i~~  125 (339)
T 3a8t_A           46 MGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSLAGKAVSE  125 (339)
T ss_dssp             ECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHHHHHHHHH
Confidence            99999999999999998 442        2344567899987                 1 11110      34566788


Q ss_pred             HHHcCCeEEEE-------------------eccCCchhH---hhhc-CCCceEEEEeCCCHHHHHHHHHhc
Q psy6613         198 LASTLQLVVLD-------------------CDTINHPSQ---LAKT-NLSPCIVYLKISSPKVLQRLIKSR  245 (510)
Q Consensus       198 vi~sGKi~ILD-------------------ID~qg~~lq---~lks-~l~PivIFIkPPS~e~L~~rLr~R  245 (510)
                      +...|+++|+-                   +|+++  +.   .+.. .....+||..+|+.++|.+|+..|
T Consensus       126 i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~--a~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R  194 (339)
T 3a8t_A          126 ITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFE--EGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKR  194 (339)
T ss_dssp             HHHTTCEEEEECCCHHHHHHHHBSSCCTTCC---------------CBSSEEEEEEEECCHHHHHHHHHHH
T ss_pred             HHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhh--hcccCccccccccCeEEEEEeCCHHHHHHHHHhh
Confidence            88999999995                   33333  21   0111 113456677777899999999876

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.70  E-value=3.3e-05  Score=80.49  Aligned_cols=121  Identities=13%  Similarity=0.009  Sum_probs=71.3

Q ss_pred             CCeE--EecCcCChHHHHHHHhcCCCCceeeecCCCchhhhhhhcccHHHHHHHHHcCCeEEEEeccCCc-----hhHhh
Q psy6613         147 GMII--ITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTINH-----PSQLA  219 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~pFe~~I~TslesI~~vi~sGKi~ILDID~qg~-----~lq~l  219 (510)
                      +++|  +|++|+||||+.++|.+.-. +.+ ++   ...+ ....+..+.+...+..|+.||+|...-..     ..+++
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~~~-~~~-i~---~D~~-~~~~~~~~~~~~~l~~g~~vIiD~~~~~~~~r~~~~~~~  331 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVSAG-YVH-VN---RDTL-GSWQRCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCA  331 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGGGT-CEE-CC---GGGS-CSHHHHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhcC-cEE-Ec---cchH-HHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHH
Confidence            4444  99999999999999987211 111 11   1111 11124556778888999999999764330     01122


Q ss_pred             hc-CCCceEEEEeCCCHHHHHHHHHhcCC------CcHHHHHHHH-HHHHHHHhcCCCCccEEEe
Q psy6613         220 KT-NLSPCIVYLKISSPKVLQRLIKSRGK------SQTRHLNVQM-VAAEKLAQCPQEMFDVILD  276 (510)
Q Consensus       220 ks-~l~PivIFIkPPS~e~L~~rLr~Rgt------~~~e~i~kRL-~aa~eLEq~~~~~FD~VIv  276 (510)
                      +. ....++||+ .++.+++.+|+..|+.      ...+.+..++ .+-++...  ...||+|+.
T Consensus       332 ~~~~~~~~~v~l-~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~P~~--~E~fd~v~~  393 (416)
T 3zvl_A          332 KDAGVPCRCFNF-CATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTL--AEGFLEILE  393 (416)
T ss_dssp             HHHTCCEEEEEE-CCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCCCG--GGTCSEEEE
T ss_pred             HHcCCeEEEEEE-eCCHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhcCCCCc--ccCCcEEEE
Confidence            22 333344555 7789999999987753      3344555555 32222222  367999884

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=97.69  E-value=4.8e-05  Score=70.06  Aligned_cols=56  Identities=23%  Similarity=0.457  Sum_probs=48.3

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLEN  112 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~Er  112 (510)
                      .-+++|+|+|++..+.       +|+|+.||++.|.+..+.+||.+..   .+..|++|+....++
T Consensus        14 ~~~~~al~d~~~~~~~-------el~~~~Gd~~~v~~~~~~~w~~~~~---~g~~gl~p~~~v~~~   69 (222)
T 3ehr_A           14 VKVFRALYTFEPRTPD-------ELYIEEGDIIYITDMSDTNWWKGTS---KGRTGLIPSNYVAEQ   69 (222)
T ss_dssp             CEEEEESSCCCCSSTT-------BCCCCTTCEEEEEECCSSSEEEEEE---TTEEEEEEHHHHHHH
T ss_pred             ceEEEEeCCcCCCCCC-------cccccCCCEEEEeccccchhHhccc---CCcceeechhhcccc
Confidence            4468999999999875       5999999999999999999999987   468999998766553

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.68  E-value=0.00038  Score=63.60  Aligned_cols=136  Identities=15%  Similarity=0.124  Sum_probs=72.7

Q ss_pred             EecCcCChHHHHHHHhcC-CCCceeeecCCCchh---------hhhhhc------ccHHHHHHHHHcCCeEEEEeccCCc
Q psy6613         151 ITRVTADISLAKRSLMSN-PSKRAIMERSNSRSS---------VLTEVQ------TEIERVYELASTLQLVVLDCDTINH  214 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~-P~~F~~sVshTTR~p---------Fe~~I~------TslesI~~vi~sGKi~ILDID~qg~  214 (510)
                      +|++|+||||+.+.|.+. .....+......|..         |+..+.      .-++.+..++..+..+|+|.+  + 
T Consensus        16 ~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~g~~vi~~~--~-   92 (184)
T 1y63_A           16 TGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGNHVVDYH--S-   92 (184)
T ss_dssp             ECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTSSSEEEEECS--C-
T ss_pred             ECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhhhhhHHHHhhhcccCCCCHHHHHHHHHHHHhccCCEEEeCc--h-
Confidence            999999999999988763 332222222222321         111111      113455566633445677755  3 


Q ss_pred             hhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HH-----HHHHHhcCCCCccEEEe-C-CCHHHHHHH
Q psy6613         215 PSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VA-----AEKLAQCPQEMFDVILD-E-NQLEDACEH  286 (510)
Q Consensus       215 ~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~a-----a~eLEq~~~~~FD~VIv-N-DdLd~A~~e  286 (510)
                       ...++......+||+.+ +.+++.+|+..|+... .....++ .+     ..+-...|.  -|+||. | .++++...+
T Consensus        93 -~~~~~~~~~~~vi~l~~-~~e~~~~Rl~~R~~~~-~~~~~~~~~q~~~~l~~~~~~~y~--~~~vi~~n~~~~~~~~~~  167 (184)
T 1y63_A           93 -SELFPERWFHMVVVLHT-STEVLFERLTKRQYSE-AKRAENMEAEIQCICEEEARDAYE--DDIVLVRENDTLEQMAAT  167 (184)
T ss_dssp             -CTTSCGGGCSEEEEEEC-CHHHHHHHHHHTTCCH-HHHHHHHHHHHTTHHHHHHHHHSC--GGGEEEEECSSHHHHHHH
T ss_pred             -HhhhhhccCCEEEEEEC-CHHHHHHHHHhCCCCh-hhhHhhHHHHHHHHHHHHHHHHhc--cCcEEECCCCCHHHHHHH
Confidence             33343322235666665 5889999999886442 2222333 11     112122333  276775 5 578888777


Q ss_pred             HHHHHHHH
Q psy6613         287 IAEYLEAY  294 (510)
Q Consensus       287 L~~ileai  294 (510)
                      +.++++.+
T Consensus       168 v~~i~~~l  175 (184)
T 1y63_A          168 VEEIRERV  175 (184)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77666554

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.64  E-value=0.00037  Score=63.90  Aligned_cols=138  Identities=8%  Similarity=0.090  Sum_probs=74.7

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh---------------hh-------hhhc-ccHHHHHHHHHcC-CeE
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS---------------VL-------TEVQ-TEIERVYELASTL-QLV  205 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p---------------Fe-------~~I~-TslesI~~vi~sG-Ki~  205 (510)
                      +|++|+||||+.++|.+ .. ...+......|.-               +.       +.++ .-.+.|...+..| ..+
T Consensus        21 ~G~~GsGKsT~~~~L~~~~g-~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~l~~g~~~~   99 (203)
T 1ukz_A           21 LGGPGAGKGTQCEKLVKDYS-FVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKF   99 (203)
T ss_dssp             ECSTTSSHHHHHHHHHHHSS-CEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             ECCCCCCHHHHHHHHHHHcC-ceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhhccCCCeE
Confidence            89999999999999987 43 2222211111110               00       0001 2234455667777 578


Q ss_pred             EEEeccCCchhH---hhhcCC--CceEEEEeCCCHHHHHHHHHhcC------CCcHHHHHHHHHHH----HHHHhcCCCC
Q psy6613         206 VLDCDTINHPSQ---LAKTNL--SPCIVYLKISSPKVLQRLIKSRG------KSQTRHLNVQMVAA----EKLAQCPQEM  270 (510)
Q Consensus       206 ILDID~qg~~lq---~lks~l--~PivIFIkPPS~e~L~~rLr~Rg------t~~~e~i~kRL~aa----~eLEq~~~~~  270 (510)
                      |+|.-+.+  ..   .++..+  .-++|||.+| .+++.+|+..|+      .+..+.+.+|+..-    ..+...| ..
T Consensus       100 i~dg~~~~--~~~~~~~~~~~~~~~~~i~l~~~-~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~~~~~-~~  175 (203)
T 1ukz_A          100 LIDGFPRK--MDQAISFERDIVESKFILFFDCP-EDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYF-ET  175 (203)
T ss_dssp             EEETCCCS--HHHHHHHHHHTCCCSEEEEEECC-HHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHHHHH-HT
T ss_pred             EEeCCCCC--HHHHHHHHHhcCCCCEEEEEECC-HHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHH-Hh
Confidence            88866554  32   233222  2367888876 467777776553      23455666665211    1121111 12


Q ss_pred             ccEE--Ee-CCCHHHHHHHHHHHHHH
Q psy6613         271 FDVI--LD-ENQLEDACEHIAEYLEA  293 (510)
Q Consensus       271 FD~V--Iv-NDdLd~A~~eL~~ilea  293 (510)
                      .|.+  |. +.++++.++++.++|+.
T Consensus       176 ~~~vi~id~~~~~e~v~~~i~~~l~~  201 (203)
T 1ukz_A          176 KSKVVRVRCDRSVEDVYKDVQDAIRD  201 (203)
T ss_dssp             TTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCHHHHHHHHHHHHhc
Confidence            3443  33 45799999999876653

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.63  E-value=8.2e-05  Score=67.18  Aligned_cols=92  Identities=11%  Similarity=0.023  Sum_probs=53.4

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchhhhhh-----------h-----cccHHHHHHHHHcCCeEEEEeccCC
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSSVLTE-----------V-----QTEIERVYELASTLQLVVLDCDTIN  213 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~pFe~~-----------I-----~TslesI~~vi~sGKi~ILDID~qg  213 (510)
                      +|++|+||||+.+.|.+ ....| +. ...-|..+...           +     ..-.+.+..+++.|..+|+|.....
T Consensus        11 ~G~~GsGKST~~~~L~~~l~~~~-i~-~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vi~d~~~~~   88 (193)
T 2rhm_A           11 TGHPATGKTTLSQALATGLRLPL-LS-KDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSGQSLIMESNFRV   88 (193)
T ss_dssp             EESTTSSHHHHHHHHHHHHTCCE-EE-HHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCCH
T ss_pred             ECCCCCCHHHHHHHHHHHcCCeE-ec-HHHHHHHHHHhcCccchHHHHHhhHHHHHHHHHHHHHHHhCCCeEEEecCCCC
Confidence            89999999999999876 32111 11 11111111110           0     0122345667789999999988721


Q ss_pred             chh---Hh--hhc-CCCc-eEEEEeCCCHHHHHHHHHhcC
Q psy6613         214 HPS---QL--AKT-NLSP-CIVYLKISSPKVLQRLIKSRG  246 (510)
Q Consensus       214 ~~l---q~--lks-~l~P-ivIFIkPPS~e~L~~rLr~Rg  246 (510)
                       ..   ..  +.. ...| ++||+. .+.+++.+|+..|+
T Consensus        89 -~~~~~~~~~l~~~~~~~~~~v~l~-~~~e~~~~R~~~R~  126 (193)
T 2rhm_A           89 -DLDTERMQNLHTIAPFTPIQIRCV-ASGDVLVERILSRI  126 (193)
T ss_dssp             -HHHHHHHHHHHHHSCCEEEEEEEE-CCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhcCCeEEEEEEe-CCHHHHHHHHHHhc
Confidence             10   12  233 3445 456665 46899999987775

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.53  E-value=0.0024  Score=57.29  Aligned_cols=95  Identities=16%  Similarity=0.184  Sum_probs=54.3

Q ss_pred             HHHHHHcCCeEEEEecc----------CCchhHhh-------hcCCC-ceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHH
Q psy6613         195 VYELASTLQLVVLDCDT----------INHPSQLA-------KTNLS-PCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQ  256 (510)
Q Consensus       195 I~~vi~sGKi~ILDID~----------qg~~lq~l-------ks~l~-PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kR  256 (510)
                      |...+.+|..+|+|--.          .+.....+       +..+. -.+||+..| .+++.+|+.+|+....++..++
T Consensus        76 i~~~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~r~~~~~~~~~~~  154 (195)
T 2pbr_A           76 IIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIP-VDIALRRLKEKNRFENKEFLEK  154 (195)
T ss_dssp             HHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHTTTCCCCHHHHHH
T ss_pred             HHHHHhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCC-HHHHHHHhhccCccchHHHHHH
Confidence            34557899999999311          11001111       11223 367777765 5777778777665445556666


Q ss_pred             H-HHHHHHHhcCCCCccEEEeCC-CHHHHHHHHHHHHH
Q psy6613         257 M-VAAEKLAQCPQEMFDVILDEN-QLEDACEHIAEYLE  292 (510)
Q Consensus       257 L-~aa~eLEq~~~~~FD~VIvND-dLd~A~~eL~~ile  292 (510)
                      + ..-.++...+ + -+++|.|+ ++++.++++.+++.
T Consensus       155 ~~~~~~~~~~~~-~-~~~~Id~~~~~~~~~~~i~~~l~  190 (195)
T 2pbr_A          155 VRKGFLELAKEE-E-NVVVIDASGEEEEVFKEILRALS  190 (195)
T ss_dssp             HHHHHHHHHHHS-T-TEEEEETTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhC-C-CEEEEECCCCHHHHHHHHHHHHH
Confidence            6 3334443332 1 22777765 68888888886654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.53  E-value=4.5e-05  Score=73.90  Aligned_cols=144  Identities=13%  Similarity=0.061  Sum_probs=77.8

Q ss_pred             CCCeE--EecCcCChHHHHHHHhc-CCCCc---eeeecCCCchh----h----hhhh-------------c------ccH
Q psy6613         146 PGMII--ITRVTADISLAKRSLMS-NPSKR---AIMERSNSRSS----V----LTEV-------------Q------TEI  192 (510)
Q Consensus       146 ~~RpI--~GPsGvGKsTL~~rLL~-~P~~F---~~sVshTTR~p----F----e~~I-------------~------Tsl  192 (510)
                      .+..|  .||+|+||||+.++|.+ ....|   ++.| .+||.|    +    .+.+             .      .-.
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v-~~~rep~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~~~  102 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHV-VVTREPGGTRLGETLREILLNQPMDLETEALLMFAGRREHLA  102 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCE-EEEESSSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceee-eeecCCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            35554  89999999999999887 43221   3333 356665    1    0000             0      122


Q ss_pred             HHHHHHHHcCCeEEEEec------cCC----chhHhh---hc----CCCc-eEEEEeCCCHHHHHHHHHhcCC----Cc-
Q psy6613         193 ERVYELASTLQLVVLDCD------TIN----HPSQLA---KT----NLSP-CIVYLKISSPKVLQRLIKSRGK----SQ-  249 (510)
Q Consensus       193 esI~~vi~sGKi~ILDID------~qg----~~lq~l---ks----~l~P-ivIFIkPPS~e~L~~rLr~Rgt----~~-  249 (510)
                      +.|...+++|++||+|=-      .|+    ...+.+   ..    .+.| .+||+..| .+++.+|+..|+.    +. 
T Consensus       103 ~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~-~e~~~~Ri~~R~~~dr~E~~  181 (227)
T 3v9p_A          103 LVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVP-PQIASARRGAVRMPDKFESE  181 (227)
T ss_dssp             HTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-SSCGGGTTTCCCCC---CCH
T ss_pred             HHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhccCccchhhh
Confidence            346667789999999921      111    001222   11    2455 45666555 5778888887752    11 


Q ss_pred             HHHHHHHH-HHHHHHHhcCCCCccEEEe-CCCHHHHHHHHHHHHH
Q psy6613         250 TRHLNVQM-VAAEKLAQCPQEMFDVILD-ENQLEDACEHIAEYLE  292 (510)
Q Consensus       250 ~e~i~kRL-~aa~eLEq~~~~~FD~VIv-NDdLd~A~~eL~~ile  292 (510)
                      ..+..+++ +.-.++...++..| .+|. +.++++..+++.++|+
T Consensus       182 ~~ef~~rv~~~Y~~la~~~~~~~-~vIDa~~s~eeV~~~I~~~l~  225 (227)
T 3v9p_A          182 SDAFFARTRAEYLRRAQEAPHRF-VIVDSSEPIAQIRKQLEGVLA  225 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTTE-EEEETTSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhcCCE-EEEeCCCCHHHHHHHHHHHHH
Confidence            12444555 44445655554322 3343 5678888888886654

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.51  E-value=7.5e-05  Score=68.61  Aligned_cols=136  Identities=11%  Similarity=0.077  Sum_probs=71.5

Q ss_pred             EecCcCChHHHHHHHhc-CCC-CceeeecCCCchh-------------hhh----------hhc-----ccHHHHHHHHH
Q psy6613         151 ITRVTADISLAKRSLMS-NPS-KRAIMERSNSRSS-------------VLT----------EVQ-----TEIERVYELAS  200 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~-~F~~sVshTTR~p-------------Fe~----------~I~-----TslesI~~vi~  200 (510)
                      .|++|+||||+.+.|.+ ... .+..   .++|.+             |..          .+.     ..++.|...+.
T Consensus        16 ~G~~GsGKST~~~~L~~~l~~~~~~~---~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~   92 (212)
T 2wwf_A           16 EGLDRSGKSTQSKLLVEYLKNNNVEV---KHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNEIKSLLL   92 (212)
T ss_dssp             EESTTSSHHHHHHHHHHHHHHTTCCE---EEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHHHHcCCcE---EEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999876 211 1211   122221             100          000     12234666778


Q ss_pred             cCCeEEEEeccCCc-h---------hHhhh---cC--CCceEEEEeCCCHHHHHHHHHhc-CCCcHHHHHHHHHHH-HHH
Q psy6613         201 TLQLVVLDCDTINH-P---------SQLAK---TN--LSPCIVYLKISSPKVLQRLIKSR-GKSQTRHLNVQMVAA-EKL  263 (510)
Q Consensus       201 sGKi~ILDID~qg~-~---------lq~lk---s~--l~PivIFIkPPS~e~L~~rLr~R-gt~~~e~i~kRL~aa-~eL  263 (510)
                      .|..||+|-.+.+. +         ...+.   ..  ..-.+||+..|. +++.+|+..+ +....++...++... .++
T Consensus        93 ~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~-e~~~~Rl~~r~~r~~~~~~~~~~~~~~~~~  171 (212)
T 2wwf_A           93 KGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPP-NYAQNRSDYGEEIYEKVETQKKIYETYKHF  171 (212)
T ss_dssp             HTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCT-TGGGGSTTTTSSTTCSHHHHHHHHHHGGGG
T ss_pred             CCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCH-HHHHHhhccCcccccHHHHHHHHHHHHHHH
Confidence            89999999544210 0         11111   21  123577777654 5666676543 112224455555222 222


Q ss_pred             HhcCCCCccEEEeCC-CHHHHHHHHHHHHHH
Q psy6613         264 AQCPQEMFDVILDEN-QLEDACEHIAEYLEA  293 (510)
Q Consensus       264 Eq~~~~~FD~VIvND-dLd~A~~eL~~ilea  293 (510)
                      ..   ..-+++|.|+ ++++.++++.++++.
T Consensus       172 ~~---~~~~~~Id~~~~~~~~~~~i~~~l~~  199 (212)
T 2wwf_A          172 AH---EDYWINIDATRKIEDIHNDIVKEVTK  199 (212)
T ss_dssp             TT---CTTEEEEECSSCHHHHHHHHHHHHTT
T ss_pred             hc---cCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            21   2346666654 688888888866543

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=97.50  E-value=6.7e-05  Score=74.96  Aligned_cols=51  Identities=10%  Similarity=0.097  Sum_probs=42.5

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ...|+|+|||.+.          +++|++||++.+++..+++||.++.  .+|..|+|||..+
T Consensus       198 ~~~v~al~dy~~~----------e~~~~kge~~~l~~~s~~~wW~v~~--~~G~~g~vPs~~~  248 (283)
T 3pe0_A          198 RLPLLAVCDYKQV----------EVTVHKGDECQLVGPAQPSHWKVLS--SSGSEAAVPSVCF  248 (283)
T ss_dssp             CEEEEECSCEECS----------SCEECTTCEEEEEEECSTTEEEEEC--C---EEEEEGGGE
T ss_pred             CceEEeecCccCC----------cccccCCCEEEEeeCCCCCceEEEc--CCCCEeeccceEE
Confidence            4789999999874          4899999999999999999999997  3568899998765

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.38  E-value=0.0014  Score=60.23  Aligned_cols=91  Identities=12%  Similarity=0.156  Sum_probs=51.2

Q ss_pred             cCCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEEEeCC-C
Q psy6613         201 TLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDEN-Q  279 (510)
Q Consensus       201 sGKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~VIvND-d  279 (510)
                      .|..+|+|+..-.  -..+. .+.-.+|||..| .+++.+|+..|+..+.+++..++......+..+ ...|+||.|+ +
T Consensus       104 ~~~~vv~~~~~l~--e~~~~-~~~d~vi~l~~~-~e~~~~Rl~~R~~~~~e~~~~r~~~q~~~~~~~-~~ad~vIdn~~~  178 (206)
T 1jjv_A          104 TAPYTLFVVPLLI--ENKLT-ALCDRILVVDVS-PQTQLARSAQRDNNNFEQIQRIMNSQVSQQERL-KWADDVINNDAE  178 (206)
T ss_dssp             CSSEEEEECTTTT--TTTCG-GGCSEEEEEECC-HHHHHHHHC-----CHHHHHHHHHHSCCHHHHH-HHCSEEEECCSC
T ss_pred             CCCEEEEEechhh--hcCcH-hhCCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhcCChHHHH-HhCCEEEECCCC
Confidence            4678898875422  11011 223578888875 677778887774445566666664211111111 1458999886 5


Q ss_pred             HH----HHHHHHHHHHHHHHH
Q psy6613         280 LE----DACEHIAEYLEAYWR  296 (510)
Q Consensus       280 Ld----~A~~eL~~ileai~~  296 (510)
                      ++    +.++++..++..+..
T Consensus       179 ~~~~~~~~~~~i~~~~~~~~~  199 (206)
T 1jjv_A          179 LAQNLPHLQQKVLELHQFYLQ  199 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHH
Confidence            88    777777777766543

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=97.36  E-value=0.00016  Score=67.82  Aligned_cols=54  Identities=20%  Similarity=0.449  Sum_probs=46.0

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCC---ceEEEEccCCCceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSN---WWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~---WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      .-.++|+|+|.+..+.       .|+|+.||++.|+.+.+.+   ||.++.   .++.|++|+....
T Consensus       170 ~~~~~al~d~~~~~~~-------eLa~~~G~~i~vl~~~~~~~~~Ww~~~~---~~~~G~~P~~yv~  226 (239)
T 1ycs_B          170 KGVIYALWDYEPQNDD-------ELPMKEGDCMTIIHREDEDEIEWWWARL---NDKEGYVPRNLLG  226 (239)
T ss_dssp             GGEEEESSCBCCSSTT-------BCCBCSSCEEEECCCCTTSCSSEEEEEE---TTEEEEEEGGGEE
T ss_pred             cceEEEEeccCCCCCC-------cccccCCCEEEEEEecCCCCCCEEEEEE---CCcEEEeehHHee
Confidence            3468899999999865       5999999999999998776   999997   4689999998754

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.36  E-value=0.00017  Score=69.96  Aligned_cols=94  Identities=11%  Similarity=0.045  Sum_probs=58.3

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceee--------ecCCCchhhh-----------------h-hhc------ccHHHHHH
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIM--------ERSNSRSSVL-----------------T-EVQ------TEIERVYE  197 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~s--------VshTTR~pFe-----------------~-~I~------TslesI~~  197 (510)
                      +||+|+|||||.+.|.. ....+...        .+.+|+.+-.                 + .+.      .....+ +
T Consensus         7 ~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~i-~   85 (253)
T 2ze6_A            7 YGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLIFEV-D   85 (253)
T ss_dssp             ECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHHHHH-H
T ss_pred             ECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHHHHH-H
Confidence            99999999999999976 22222111        1345554300                 0 110      344455 6


Q ss_pred             HHHcCCeEEEEeccCCchhHh-hhc-----CCCceEEEEeCCCHHHHHHHHHhcC
Q psy6613         198 LASTLQLVVLDCDTINHPSQL-AKT-----NLSPCIVYLKISSPKVLQRLIKSRG  246 (510)
Q Consensus       198 vi~sGKi~ILDID~qg~~lq~-lks-----~l~PivIFIkPPS~e~L~~rLr~Rg  246 (510)
                      ++..|+.+|++..... ..+. ++.     .+...+||+.+|..+++.+|++.|+
T Consensus        86 ~~~~g~~vIl~gg~~~-~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~  139 (253)
T 2ze6_A           86 WRKSEEGLILEGGSIS-LLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRV  139 (253)
T ss_dssp             TTTTSSEEEEEECCHH-HHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHH
T ss_pred             HHhCCCCeEEeccHHH-HHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHH
Confidence            6689999999976421 1111 111     1345789999999899999998774

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.35  E-value=0.0014  Score=61.28  Aligned_cols=141  Identities=12%  Similarity=0.085  Sum_probs=73.4

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh------hhhhh--------cccHHH----HHHHH----HcCCeEEE
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS------VLTEV--------QTEIER----VYELA----STLQLVVL  207 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p------Fe~~I--------~Tsles----I~~vi----~sGKi~IL  207 (510)
                      +||+|+||||+.+.|.+ .. ...+.+.+++|..      .-..+        ..+.+.    +.+-+    ..+..+|+
T Consensus        11 ~G~~GsGKsT~~~~La~~l~-~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vi   89 (222)
T 1zak_A           11 SGAPASGKGTQCELIKTKYQ-LAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQENGWLL   89 (222)
T ss_dssp             EESTTSSHHHHHHHHHHHHC-CEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHHHTCEEE
T ss_pred             ECCCCCCHHHHHHHHHHHhC-CceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccccCCcEEE
Confidence            89999999999999987 33 2233333344431      00001        011111    11111    12344566


Q ss_pred             EeccCCch--hHhhhc-CCCc-eEEEEeCCCHHHHHHHHHhcC-----------------------------CCcHHHHH
Q psy6613         208 DCDTINHP--SQLAKT-NLSP-CIVYLKISSPKVLQRLIKSRG-----------------------------KSQTRHLN  254 (510)
Q Consensus       208 DID~qg~~--lq~lks-~l~P-ivIFIkPPS~e~L~~rLr~Rg-----------------------------t~~~e~i~  254 (510)
                      |--+.+ .  +..+.. ...| ++||+..| .+++.+|+..|+                             .+..+.+.
T Consensus        90 dg~~~~-~~~~~~l~~~~~~~~~vi~L~~~-~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~~~~i~  167 (222)
T 1zak_A           90 DGYPRS-YSQAMALETLEIRPDTFILLDVP-DELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVK  167 (222)
T ss_dssp             ESCCCS-HHHHHHHHTTTCCCSEEEEEECC-HHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCCTTHHH
T ss_pred             ECCCCC-HHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCCCHHHHH
Confidence            754443 1  122332 2333 56666664 677777775542                             23346677


Q ss_pred             HHH-HHHHH---HHhcCCCCccEEEe-CCCHHHHHHHHHHHHHHHH
Q psy6613         255 VQM-VAAEK---LAQCPQEMFDVILD-ENQLEDACEHIAEYLEAYW  295 (510)
Q Consensus       255 kRL-~aa~e---LEq~~~~~FD~VIv-NDdLd~A~~eL~~ileai~  295 (510)
                      +|+ ....+   +...|.+ ..++|. +.++++.++++.++|..++
T Consensus       168 ~Rl~~~~~~~~~l~~~y~~-~~~~Id~~~~~~ev~~~I~~~l~~~l  212 (222)
T 1zak_A          168 LRLETYYQNIESLLSTYEN-IIVKVQGDATVDAVFAKIDELLGSIL  212 (222)
T ss_dssp             HHHHHHHHHHHHHHHTTCC-CEEEEECSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh-cEEEEECCCCHHHHHHHHHHHHHhhc
Confidence            777 33333   3334433 234443 3568999999998887654

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.34  E-value=0.0012  Score=59.15  Aligned_cols=133  Identities=11%  Similarity=0.050  Sum_probs=66.6

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecC----CCchhhh---hhh-------cccHHHHHHHHHc-CCeEEEEeccCCc
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERS----NSRSSVL---TEV-------QTEIERVYELAST-LQLVVLDCDTINH  214 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVsh----TTR~pFe---~~I-------~TslesI~~vi~s-GKi~ILDID~qg~  214 (510)
                      .|++|+||||+.+.|.+ ....|.. .+.    .-|.-|.   ..+       ..-.+.+..++.. |..+|+|......
T Consensus        11 ~G~~GsGKST~a~~La~~l~~~~i~-d~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~l~~~g~~vi~d~~~~~~   89 (183)
T 2vli_A           11 NGPFGVGKTHTAHTLHERLPGSFVF-EPEEMGQALRKLTPGFSGDPQEHPMWIPLMLDALQYASREAAGPLIVPVSISDT   89 (183)
T ss_dssp             ECCC----CHHHHHHHHHSTTCEEC-CTHHHHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHHHHHCSSCEEEEECCCCH
T ss_pred             ECCCCCCHHHHHHHHHHhcCCCEEE-chhhhHHHHHHhCccccchhhhhHHHHHHHHHHHHHHHHhCCCcEEEeeeccCH
Confidence            89999999999999876 3322220 100    0000011   000       0113456666766 8899999655320


Q ss_pred             -----hhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCC-cHHHHHHHH-HHHHHHHhcCCCCccEEEeCC--CHHHHH
Q psy6613         215 -----PSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKS-QTRHLNVQM-VAAEKLAQCPQEMFDVILDEN--QLEDAC  284 (510)
Q Consensus       215 -----~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~-~~e~i~kRL-~aa~eLEq~~~~~FD~VIvND--dLd~A~  284 (510)
                           ..+.++. .....+||+.. +.+++.+|+..|+.. -..+...++ ..-..+     . ++.+|.++  ++++++
T Consensus        90 ~~~~~~~~~l~~~~~~~~~i~l~~-~~e~~~~R~~~R~~r~~~~~~~~~~~~~~~~~-----~-~~~~Id~~~~~~~~~~  162 (183)
T 2vli_A           90 ARHRRLMSGLKDRGLSVHHFTLIA-PLNVVLERLRRDGQPQVNVGTVEDRLNELRGE-----Q-FQTHIDTAGLGTQQVA  162 (183)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEEEEC-CHHHHHHHHHTC----CCHHHHHHHHHHHTSG-----G-GCSEEECTTCCHHHHH
T ss_pred             HHHHHHHHHHHhcCCceEEEEEeC-CHHHHHHHHHhccccchhHHHHHHHHHhhccc-----c-cceEeeCCCCCHHHHH
Confidence                 0123333 33445688887 488899999887531 112222222 211112     1 33377765  688888


Q ss_pred             HHHHHHH
Q psy6613         285 EHIAEYL  291 (510)
Q Consensus       285 ~eL~~il  291 (510)
                      +++.+++
T Consensus       163 ~~I~~~l  169 (183)
T 2vli_A          163 EQIAAQV  169 (183)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887554

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.34  E-value=0.0022  Score=59.57  Aligned_cols=91  Identities=13%  Similarity=0.180  Sum_probs=55.7

Q ss_pred             cCCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEEEeCC-C
Q psy6613         201 TLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDEN-Q  279 (510)
Q Consensus       201 sGKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~VIvND-d  279 (510)
                      .|..+|+|...-- -.. +. ...-++|||.. +.+++.+|+..|+..+.+++..++......+. +...+|++|.|+ +
T Consensus       106 ~~~~vi~~~~~l~-~~~-~~-~~~d~vi~l~~-~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~-~~~~ad~vId~~~~  180 (218)
T 1vht_A          106 TSPYVLWVVPLLV-ENS-LY-KKANRVLVVDV-SPETQLKRTMQRDDVTREHVEQILAAQATREA-RLAVADDVIDNNGA  180 (218)
T ss_dssp             CSSEEEEECTTTT-TTT-GG-GGCSEEEEEEC-CHHHHHHHHHHHHTCCHHHHHHHHHHSCCHHH-HHHHCSEEEECSSC
T ss_pred             CCCEEEEEeeeee-ccC-cc-ccCCEEEEEEC-CHHHHHHHHHHcCCCCHHHHHHHHHhcCChHH-HHHhCCEEEECCCC
Confidence            4667777775321 011 11 12337899986 57888888887754445555555532111111 113468999887 7


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy6613         280 LEDACEHIAEYLEAYWR  296 (510)
Q Consensus       280 Ld~A~~eL~~ileai~~  296 (510)
                      +++.++++.++++.+..
T Consensus       181 ~~~~~~~I~~~l~~~~~  197 (218)
T 1vht_A          181 PDAIASDVARLHAHYLQ  197 (218)
T ss_dssp             TTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999988887765

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=97.32  E-value=0.0013  Score=62.74  Aligned_cols=145  Identities=14%  Similarity=0.138  Sum_probs=82.3

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-C-CCCceeeecCCCchh-----------hhh--------hhc-------------c
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-N-PSKRAIMERSNSRSS-----------VLT--------EVQ-------------T  190 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~-P~~F~~sVshTTR~p-----------Fe~--------~I~-------------T  190 (510)
                      |++|  .|+.|+||||+.+.|.+ . ...+. .+ .+||.|           +..        .+.             .
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~-~v-~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~   80 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIR-DM-VFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQ   80 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHTTCC-CE-EEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCC-cc-eeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHH
Confidence            4444  79999999999998876 2 22221 22 345554           111        111             2


Q ss_pred             cH-HHHHHHHHcCCeEEEEec------cCC----chhHhh---hc----CCCc-eEEEEeCCCHHHHHHHHHhcCCC-c-
Q psy6613         191 EI-ERVYELASTLQLVVLDCD------TIN----HPSQLA---KT----NLSP-CIVYLKISSPKVLQRLIKSRGKS-Q-  249 (510)
Q Consensus       191 sl-esI~~vi~sGKi~ILDID------~qg----~~lq~l---ks----~l~P-ivIFIkPPS~e~L~~rLr~Rgt~-~-  249 (510)
                      .+ +.|...+++|++||.|=-      .||    .....+   ..    .+.| ++||+.. +.++..+|+..||.. . 
T Consensus        81 ~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv-~~e~~~~Ri~~R~~~dr~  159 (213)
T 4tmk_A           81 LVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDV-TPEVGLKRARARGELDRI  159 (213)
T ss_dssp             HHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEEC-CHHHHHHHHHHHSSCCTT
T ss_pred             HHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeC-CHHHHHHHHHhcCCccch
Confidence            22 236667899999999932      122    001222   21    2455 4556555 478888888887641 1 


Q ss_pred             ---HHHHHHHH-HHHHHHHhcCCCCccEEEe-CCCHHHHHHHHHHHHHHHHH
Q psy6613         250 ---TRHLNVQM-VAAEKLAQCPQEMFDVILD-ENQLEDACEHIAEYLEAYWR  296 (510)
Q Consensus       250 ---~e~i~kRL-~aa~eLEq~~~~~FD~VIv-NDdLd~A~~eL~~ileai~~  296 (510)
                         ..+..+++ +.-.++...+ ..| .+|. +.++++.++++.++|+.++.
T Consensus       160 E~~~~~f~~rv~~~y~~la~~~-~~~-~vIDa~~s~eeV~~~I~~~l~~~l~  209 (213)
T 4tmk_A          160 EQESFDFFNRTRARYLELAAQD-KSI-HTIDATQPLEAVMDAIRTTVTHWVK  209 (213)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHTC-TTE-EEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHC-CcE-EEECCCCCHHHHHHHHHHHHHHHHH
Confidence               13445566 4444554433 222 3333 46799999999988877653

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.31  E-value=0.00092  Score=60.70  Aligned_cols=85  Identities=13%  Similarity=0.076  Sum_probs=48.7

Q ss_pred             CCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHH-HHHHHhcCCCCccEEEeCC-C
Q psy6613         202 LQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVA-AEKLAQCPQEMFDVILDEN-Q  279 (510)
Q Consensus       202 GKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~a-a~eLEq~~~~~FD~VIvND-d  279 (510)
                      |..||+|...--  ...+. ...-++|||..| .+++.+|+..|+..+.++...++.. ....+.  ...+|++|.|+ +
T Consensus       106 ~~~vi~d~~~l~--~~~~~-~~~d~~i~l~~~-~e~~~~R~~~R~~~~~~~~~~~i~~~~~~~~~--~~~ad~vId~~~~  179 (203)
T 1uf9_A          106 APLVFLEIPLLF--EKGWE-GRLHGTLLVAAP-LEERVRRVMARSGLSREEVLARERAQMPEEEK--RKRATWVLENTGS  179 (203)
T ss_dssp             CSEEEEECTTTT--TTTCG-GGSSEEEEECCC-HHHHHHHHHTTTCCTTHHHHHHHTTSCCHHHH--HHHCSEEECCSSH
T ss_pred             CCEEEEEeccee--ccCch-hhCCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHHCCChhHH--HHhCCEEEECCCC
Confidence            688888864321  00011 123478999864 7888888887754444555555521 111111  13468888877 4


Q ss_pred             HHHHHHHHHHHHH
Q psy6613         280 LEDACEHIAEYLE  292 (510)
Q Consensus       280 Ld~A~~eL~~ile  292 (510)
                      +++.++++.+++.
T Consensus       180 ~~~~~~~i~~~~~  192 (203)
T 1uf9_A          180 LEDLERALKAVLA  192 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777775543

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.25  E-value=0.00056  Score=65.84  Aligned_cols=144  Identities=9%  Similarity=0.115  Sum_probs=77.7

Q ss_pred             CCeE--EecCcCChHHHHHHHhcCCCCceeeecCCCch------hh----hhhhc--------ccH----HHHHHHHHcC
Q psy6613         147 GMII--ITRVTADISLAKRSLMSNPSKRAIMERSNSRS------SV----LTEVQ--------TEI----ERVYELASTL  202 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~------pF----e~~I~--------Tsl----esI~~vi~sG  202 (510)
                      .++|  +||+|+||+|..++|.++..-..++.-.--|.      +.    .+.+.        .-.    +.+.+....+
T Consensus        29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~~~~  108 (217)
T 3umf_A           29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLVDKN  108 (217)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTTTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccccc
Confidence            3554  89999999999999987211111111000011      10    00010        111    2333334456


Q ss_pred             CeEEEEeccCCchhHhhh---c-CCCc-eEEEEeCCCHHHHHHHHHhcCC------CcHHHHHHHHH----HHHHHHhcC
Q psy6613         203 QLVVLDCDTINHPSQLAK---T-NLSP-CIVYLKISSPKVLQRLIKSRGK------SQTRHLNVQMV----AAEKLAQCP  267 (510)
Q Consensus       203 Ki~ILDID~qg~~lq~lk---s-~l~P-ivIFIkPPS~e~L~~rLr~Rgt------~~~e~i~kRL~----aa~eLEq~~  267 (510)
                      +..|||-=|..  .....   . ...+ .+||+..| .+++.+|+.+|+.      ++.+.+.+||+    ...-+...|
T Consensus       109 ~g~ilDGfPRt--~~Qa~~l~~~~~~~~~vi~l~v~-~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y  185 (217)
T 3umf_A          109 CHFLIDGYPRE--LDQGIKFEKEVCPCLCVINFDVS-EEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKPVIEHY  185 (217)
T ss_dssp             SEEEEETBCSS--HHHHHHHHHHTCCCSEEEEEECC-HHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             cCcccccCCCc--HHHHHHHHHhCCccCEEEeccCC-HHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999988766  33332   2 2233 56777765 6788888877643      23466778872    222243334


Q ss_pred             CCCccEEEe--CCCHHHHHHHHHHHHHH
Q psy6613         268 QEMFDVILD--ENQLEDACEHIAEYLEA  293 (510)
Q Consensus       268 ~~~FD~VIv--NDdLd~A~~eL~~ilea  293 (510)
                      ...--++.+  +.+.++.++++..+|+.
T Consensus       186 ~~~~~l~~Idg~~~~eeV~~~I~~~l~k  213 (217)
T 3umf_A          186 KQQNKVITIDASGTVDAIFDKVNHELQK  213 (217)
T ss_dssp             HTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred             HhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            333334444  35789999999876653

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.23  E-value=0.00058  Score=64.20  Aligned_cols=92  Identities=9%  Similarity=0.001  Sum_probs=49.6

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchhh------hhhh--------ccc----HHHHHHHHH--cCCeEEEEe
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSSV------LTEV--------QTE----IERVYELAS--TLQLVVLDC  209 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~pF------e~~I--------~Ts----lesI~~vi~--sGKi~ILDI  209 (510)
                      +|++|+||||+.+.|.+ .. ...+......|...      -..+        ...    ...+.+.+.  .+..+|+|.
T Consensus        13 ~G~~GsGKsT~a~~La~~l~-~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vid~   91 (227)
T 1zd8_A           13 MGAPGSGKGTVSSRITTHFE-LKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNLTQYSWLLDG   91 (227)
T ss_dssp             EECTTSSHHHHHHHHHHHSS-SEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTCTTSCEEEES
T ss_pred             ECCCCCCHHHHHHHHHHHcC-CeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcccCCCEEEeC
Confidence            99999999999999986 32 22222222222210      0000        011    122333344  377889998


Q ss_pred             ccCCchhHh--hhc-CCCceEEEEeCCCHHHHHHHHHhc
Q psy6613         210 DTINHPSQL--AKT-NLSPCIVYLKISSPKVLQRLIKSR  245 (510)
Q Consensus       210 D~qg~~lq~--lks-~l~PivIFIkPPS~e~L~~rLr~R  245 (510)
                      -+.. +.+.  +.. ....++||+.. +.+++.+|+..|
T Consensus        92 ~~~~-~~~~~~l~~~~~~~~vi~L~~-~~~~~~~R~~~R  128 (227)
T 1zd8_A           92 FPRT-LPQAEALDRAYQIDTVINLNV-PFEVIKQRLTAR  128 (227)
T ss_dssp             CCCS-HHHHHHHHTTSCCCEEEEEEC-CHHHHHHHHTCE
T ss_pred             CCCC-HHHHHHHHHhcCCCEEEEEEC-CHHHHHHHHHcC
Confidence            6643 3222  222 12336788877 467777777655

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.17  E-value=0.00059  Score=63.30  Aligned_cols=71  Identities=13%  Similarity=0.142  Sum_probs=29.1

Q ss_pred             cCCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHH-----HH-hcCCCCccE
Q psy6613         201 TLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEK-----LA-QCPQEMFDV  273 (510)
Q Consensus       201 sGKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~e-----LE-q~~~~~FD~  273 (510)
                      .+.+||+|...-.  ...+. .+..++|||.+|. ++..+|+..|+    ++...++ ..-..     ++ ......+|+
T Consensus       124 ~~~~vIveg~~l~--~~~~~-~~~d~~i~v~~~~-~~~~~R~~~R~----~~~~~~~~~~~~~~~~~y~~~~~~~~~AD~  195 (201)
T 1rz3_A          124 DSDMIMIEGVFLQ--RKEWR-PFFDFVVYLDCPR-EIRFARENDQV----KQNIQKFINRYWKAEDYYLETEEPIKRADV  195 (201)
T ss_dssp             TCSEEEEEETTTT--STTTG-GGCSEEEEECCC-------------------CHHHHHHHHHHHHHHHHHHHCHHHHCSE
T ss_pred             CCcEEEEechhhc--cHHHH-hhcCEEEEEeCCH-HHHHHHHhcCC----HHHHHHHHhheeHHHHHHhCCCCcHhhCcE
Confidence            4678888876533  11111 2345899999986 55556666676    3333444 11111     11 111256899


Q ss_pred             EEeCCC
Q psy6613         274 ILDENQ  279 (510)
Q Consensus       274 VIvNDd  279 (510)
                      ||.|+.
T Consensus       196 vI~N~~  201 (201)
T 1rz3_A          196 VFDMTS  201 (201)
T ss_dssp             EEC---
T ss_pred             EecCCC
Confidence            999873

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.14  E-value=0.0018  Score=59.23  Aligned_cols=83  Identities=11%  Similarity=0.165  Sum_probs=50.3

Q ss_pred             CeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCC-CH
Q psy6613         203 QLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVILDEN-QL  280 (510)
Q Consensus       203 Ki~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvND-dL  280 (510)
                      ..+|+|...-.  -..+. .+..++|||..| .+++.+|+..||. +.+++..++ ......+.  ....|+||.|+ ++
T Consensus       106 ~~vive~~~l~--~~~~~-~~~~~~i~l~~~-~e~~~~Rl~~R~~-~~~~~~~~~~~~~~~~~~--~~~ad~vId~~~~~  178 (204)
T 2if2_A          106 TLFILEASLLV--EKGTY-KNYDKLIVVYAP-YEVCKERAIKRGM-SEEDFERRWKKQMPIEEK--VKYADYVIDNSGSI  178 (204)
T ss_dssp             CCEEEECSCST--TTTCG-GGSSEEEEECCC-HHHHHHHHHHTCC-CHHHHHHHHTTSCCHHHH--GGGCSEECCCSSCH
T ss_pred             CEEEEEccccc--cCCch-hhCCEEEEEECC-HHHHHHHHHHcCC-CHHHHHHHHHhCCChhHH--HhcCCEEEECCCCH
Confidence            78888875322  01111 223478888875 7888888888864 345555666 22111111  13458888876 78


Q ss_pred             HHHHHHHHHHHH
Q psy6613         281 EDACEHIAEYLE  292 (510)
Q Consensus       281 d~A~~eL~~ile  292 (510)
                      ++.++++.++++
T Consensus       179 ~~~~~~i~~~l~  190 (204)
T 2if2_A          179 EETYKQVKKVYE  190 (204)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888886654

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.11  E-value=0.00091  Score=60.16  Aligned_cols=136  Identities=15%  Similarity=0.093  Sum_probs=69.8

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh--------------hhhhhccc----HHHHHHHHHcCCeEEEEecc
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS--------------VLTEVQTE----IERVYELASTLQLVVLDCDT  211 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p--------------Fe~~I~Ts----lesI~~vi~sGKi~ILDID~  211 (510)
                      +|++|+||||+.+.|.+ .. ...+......|..              |.......    ...+.+.+..|  +|+|-.+
T Consensus        10 ~G~~GsGKST~~~~La~~l~-~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~~~--~i~dg~~   86 (186)
T 3cm0_A           10 LGPPGAGKGTQASRLAQELG-FKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAER--VIFDGFP   86 (186)
T ss_dssp             ECCTTSCHHHHHHHHHHHHT-CEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCCSE--EEEESCC
T ss_pred             ECCCCCCHHHHHHHHHHHhC-CeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhcCC--EEEeCCC
Confidence            89999999999999876 22 1111111112211              11100011    22344444444  8888666


Q ss_pred             CCchhH------hhhc-CCCc-eEEEEeCCCHHHHHHHHHhcC------CCcHHHHHHHH-HHHHH---HHhcCCC-Ccc
Q psy6613         212 INHPSQ------LAKT-NLSP-CIVYLKISSPKVLQRLIKSRG------KSQTRHLNVQM-VAAEK---LAQCPQE-MFD  272 (510)
Q Consensus       212 qg~~lq------~lks-~l~P-ivIFIkPPS~e~L~~rLr~Rg------t~~~e~i~kRL-~aa~e---LEq~~~~-~FD  272 (510)
                      .+ ..+      .+.. .+.| ++||+..| .+++.+|+..|+      ..+.+.+.+|+ ....+   +...|.. ..+
T Consensus        87 ~~-~~~~~~l~~~l~~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~  164 (186)
T 3cm0_A           87 RT-LAQAEALDRLLSETGTRLLGVVLVEVP-EEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVL  164 (186)
T ss_dssp             CS-HHHHHHHHHHHHHTTEEEEEEEEEECC-HHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             CC-HHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcE
Confidence            55 111      1222 2234 56777765 788888887663      23455566666 22211   2222211 125


Q ss_pred             EEEeC-CCHHHHHHHHHHHH
Q psy6613         273 VILDE-NQLEDACEHIAEYL  291 (510)
Q Consensus       273 ~VIvN-DdLd~A~~eL~~il  291 (510)
                      ++|.| .++++.++++.+++
T Consensus       165 ~~id~~~~~~~v~~~i~~~l  184 (186)
T 3cm0_A          165 KRVDGLGTPDEVYARIRAAL  184 (186)
T ss_dssp             EEEECCSCHHHHHHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHh
Confidence            66665 47888888887544

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.99  E-value=0.0015  Score=61.99  Aligned_cols=139  Identities=12%  Similarity=0.101  Sum_probs=78.5

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchh----------hhhhhc--------ccHHHHHHHHHcCCeEEEEeccC
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS----------VLTEVQ--------TEIERVYELASTLQLVVLDCDTI  212 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p----------Fe~~I~--------TslesI~~vi~sGKi~ILDID~q  212 (510)
                      +||+|+||+|..++|.++..-..++.-.--|.-          ....+.        .-++-|.+.+.+...+|||-=|.
T Consensus         6 ~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ilDGfPR   85 (206)
T 3sr0_A            6 LGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNVIFDGFPR   85 (206)
T ss_dssp             ECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSCEEEESCCC
T ss_pred             ECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCCceEecCCch
Confidence            899999999999999872211111110001211          000000        23344555556667799998776


Q ss_pred             CchhHhhh-------c-CCCc-eEEEEeCCCHHHHHHHHHhcC--------------------------CCcHHHHHHHH
Q psy6613         213 NHPSQLAK-------T-NLSP-CIVYLKISSPKVLQRLIKSRG--------------------------KSQTRHLNVQM  257 (510)
Q Consensus       213 g~~lq~lk-------s-~l~P-ivIFIkPPS~e~L~~rLr~Rg--------------------------t~~~e~i~kRL  257 (510)
                      .  .....       . .+.+ .+|++..| .++|.+|+.+|.                          .++.+.+.+||
T Consensus        86 t--~~Qa~~l~~~l~~~~~~~~~vi~l~v~-~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~e~i~~Rl  162 (206)
T 3sr0_A           86 T--VKQAEALDEMLEKKGLKVDHVLLFEVP-DEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRL  162 (206)
T ss_dssp             S--HHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSHHHHHHHH
T ss_pred             h--HHHHHHHHhhHHHhccccceeeecCCC-HHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCHHHHHHHH
Confidence            5  33222       1 3344 56777775 577777887662                          23457788888


Q ss_pred             -HH---HHHHHhcCCCCccEEEe--CCCHHHHHHHHHHHHH
Q psy6613         258 -VA---AEKLAQCPQEMFDVILD--ENQLEDACEHIAEYLE  292 (510)
Q Consensus       258 -~a---a~eLEq~~~~~FD~VIv--NDdLd~A~~eL~~ile  292 (510)
                       .-   ..-+...|....-++.+  +.+.++.++++.++|+
T Consensus       163 ~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~  203 (206)
T 3sr0_A          163 EVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG  203 (206)
T ss_dssp             HHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence             22   22344444444444444  4578999999886653

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=96.86  E-value=1.2e-05  Score=82.02  Aligned_cols=52  Identities=8%  Similarity=0.102  Sum_probs=42.6

Q ss_pred             EEeeccCCCC--CCCCCCCCccccc--cCCceEEEEeecCCCceEEEEccCCCceeeecCh
Q psy6613          51 RTNVKYDGSI--DDDSPVHGYAVSF--DIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSP  107 (510)
Q Consensus        51 RAlfdY~~~~--D~~iPc~e~~LsF--~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~  107 (510)
                      +|+|+|.+..  +.     +.+|+|  ..||+|.|+++.|++||.|+..+..|+.|+||+.
T Consensus       270 ~a~yd~~~~~~~~~-----e~eL~~~~~~GD~I~v~~~~d~gWw~Ge~~g~~G~~glfP~~  325 (341)
T 2dyb_A          270 KDLLELTRREFQRE-----DIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWK  325 (341)
T ss_dssp             HHHHHHHHHHHTCS-----CEEEEEECSSSCEEECCSHHHHHHHHHHHTTSCCBTTBCSSC
T ss_pred             hhhhhhhhhhcCCC-----cccccCCCCCCCEEEEeeecCCCEeEEEECCCCCCCceecce
Confidence            5788888743  22     346878  8999999999999999999986667789999985

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.81  E-value=0.0036  Score=60.56  Aligned_cols=134  Identities=15%  Similarity=0.103  Sum_probs=70.1

Q ss_pred             EecCcCChHHHHHHHhcC-C-CCceee-ec-CCCchh---hh----hhhc-ccHHHHHHHHHcCCeEEEEeccCCc-hhH
Q psy6613         151 ITRVTADISLAKRSLMSN-P-SKRAIM-ER-SNSRSS---VL----TEVQ-TEIERVYELASTLQLVVLDCDTINH-PSQ  217 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~-P-~~F~~s-Vs-hTTR~p---Fe----~~I~-TslesI~~vi~sGKi~ILDID~qg~-~lq  217 (510)
                      +|++|+||||+.+.|.+. . ..+.+. +. ..-|..   |.    ..+. .....|...++. ..+|+|.-.-.. ...
T Consensus        10 ~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~~~~e~~~~~~~~~~i~~~l~~-~~vIiD~~~~~~~~~~   88 (260)
T 3a4m_A           10 TGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALKN-YWVIVDDTNYYNSMRR   88 (260)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCCGGGHHHHHHHHHHHHHHHHTT-SEEEECSCCCSHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhC-CEEEEeCCcccHHHHH
Confidence            899999999999988762 1 122222 11 000100   10    1111 233556677766 889999643220 011


Q ss_pred             hhhc----CCC-ceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh---cCC-CCccEEEeCC---CHHHHHH
Q psy6613         218 LAKT----NLS-PCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQ---CPQ-EMFDVILDEN---QLEDACE  285 (510)
Q Consensus       218 ~lks----~l~-PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq---~~~-~~FD~VIvND---dLd~A~~  285 (510)
                      .+..    ... -++||+.. +.+++.+|+..|+....++...++..  ..+.   .|. ...+++|.++   ++++.++
T Consensus        89 ~l~~~a~~~~~~~~vi~l~~-~~e~~~~R~~~R~~~~~~~~l~~~~~--~~e~~~~~~~~~~~~~~Id~~~~~~~~ei~~  165 (260)
T 3a4m_A           89 DLINIAKKYNKNYAIIYLKA-SLDVLIRRNIERGEKIPNEVIKKMYE--KFDEPGKKYKWDEPFLIIDTTKDIDFNEIAK  165 (260)
T ss_dssp             HHHHHHHHTTCEEEEEEEEC-CHHHHHHHHHHTTCSSCHHHHHHHHH--HCCCTTSSCGGGCCSEEEETTSCCCHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEEEeC-CHHHHHHHHHhCCCCCCHHHHHHHHH--HhcCccccCCCCCCEEEEeCCCCCCHHHHHH
Confidence            1221    223 35677774 58999999988875433343444411  1111   111 2357888765   4666666


Q ss_pred             HHH
Q psy6613         286 HIA  288 (510)
Q Consensus       286 eL~  288 (510)
                      +|.
T Consensus       166 ~I~  168 (260)
T 3a4m_A          166 KLI  168 (260)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            655

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.80  E-value=0.002  Score=60.69  Aligned_cols=90  Identities=14%  Similarity=0.045  Sum_probs=53.0

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCC----chh------hhhhhc------------ccHHHHHHHHHc--CCeE
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNS----RSS------VLTEVQ------------TEIERVYELAST--LQLV  205 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTT----R~p------Fe~~I~------------TslesI~~vi~s--GKi~  205 (510)
                      +||+|+||||+.+.|.+ ..  +.. +  +|    |.+      .-..+.            .-.+.|...+.+  |+.+
T Consensus         6 ~G~~GsGKsT~a~~La~~lg--~~~-i--~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~g~~v   80 (223)
T 2xb4_A            6 FGPNGSGKGTQGNLVKDKYS--LAH-I--ESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKGKDGW   80 (223)
T ss_dssp             ECCTTSCHHHHHHHHHHHHT--CEE-E--EHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHCTTCE
T ss_pred             ECCCCCCHHHHHHHHHHHhC--CeE-E--chHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcccCCeE
Confidence            89999999999999887 32  111 1  22    332      111110            122346666677  9999


Q ss_pred             EEEeccCCc-hhHhhh----c-CCCc-eEEEEeCCCHHHHHHHHHhcC
Q psy6613         206 VLDCDTINH-PSQLAK----T-NLSP-CIVYLKISSPKVLQRLIKSRG  246 (510)
Q Consensus       206 ILDID~qg~-~lq~lk----s-~l~P-ivIFIkPPS~e~L~~rLr~Rg  246 (510)
                      |+|..+.+. .++.+.    . ...| ++||+..| .+++.+|+..|+
T Consensus        81 IlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~  127 (223)
T 2xb4_A           81 LLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLP-REVAKNRIMGRR  127 (223)
T ss_dssp             EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTBC
T ss_pred             EEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHccc
Confidence            999766540 012221    1 3445 45666654 688889988876

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.78  E-value=0.014  Score=55.23  Aligned_cols=141  Identities=13%  Similarity=0.135  Sum_probs=73.8

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh----hhhhh------------------c-----c-cHHHHHHHHHc
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS----VLTEV------------------Q-----T-EIERVYELAST  201 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p----Fe~~I------------------~-----T-slesI~~vi~s  201 (510)
                      =|+-|+||||+++.|.+ ....+..   ..||.|    +-+.+                  .     - -.+.|...+++
T Consensus         8 EG~dGsGKsTq~~~L~~~L~~~~~v---~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~p~l~~   84 (205)
T 4hlc_A            8 EGPEGSGKTTVINEVYHRLVKDYDV---IMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALKE   84 (205)
T ss_dssp             ECCTTSCHHHHHHHHHHHHTTTSCE---EEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred             ECCCCCcHHHHHHHHHHHHHCCCCE---EEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            59999999999888776 2222221   124444    00000                  0     1 12335667899


Q ss_pred             CCeEEEEecc------CC----chhHhhh---c----CCCc-eEEEEeCCCHHHHHHHHHhcCCCcH------HHHHHHH
Q psy6613         202 LQLVVLDCDT------IN----HPSQLAK---T----NLSP-CIVYLKISSPKVLQRLIKSRGKSQT------RHLNVQM  257 (510)
Q Consensus       202 GKi~ILDID~------qg----~~lq~lk---s----~l~P-ivIFIkPPS~e~L~~rLr~Rgt~~~------e~i~kRL  257 (510)
                      |++||.|=-.      ||    .....++   .    .+.| ++||+.. +.++..+|+..|+...+      .+..+++
T Consensus        85 g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~-~~e~~~~Ri~~r~~~~dr~e~~~~~f~~~v  163 (205)
T 4hlc_A           85 GKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNV-SAEVGRERIIKNSRDQNRLDQEDLKFHEKV  163 (205)
T ss_dssp             TCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEEC-CHHHHHHHHHC-------CCHHHHHHHHHH
T ss_pred             CCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCC-CHHHHHHHHHhcCCcccchhccCHHHHHHH
Confidence            9999999432      22    0111121   1    3456 4566655 47788888877664321      1234455


Q ss_pred             -HHHHHHHhcCCCCccEEEeCCCHHHHHHHHHHHHHHHH
Q psy6613         258 -VAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYW  295 (510)
Q Consensus       258 -~aa~eLEq~~~~~FD~VIvNDdLd~A~~eL~~ileai~  295 (510)
                       ++=.++...++..|-.|=-|.++|+..+++.+.|..++
T Consensus       164 ~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~~L  202 (205)
T 4hlc_A          164 IEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYL  202 (205)
T ss_dssp             HHHHHHHHHSCCTTEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHH
Confidence             33345655554443222124578888888876665543

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.73  E-value=0.015  Score=53.41  Aligned_cols=73  Identities=21%  Similarity=0.188  Sum_probs=41.9

Q ss_pred             CCceEEEEeCCCHHHHHHHHHh----cCCCcHHHHHHHH-HHHHHH----HhcCCCCccEEEeCCC-HHHHHHHHHHHHH
Q psy6613         223 LSPCIVYLKISSPKVLQRLIKS----RGKSQTRHLNVQM-VAAEKL----AQCPQEMFDVILDENQ-LEDACEHIAEYLE  292 (510)
Q Consensus       223 l~PivIFIkPPS~e~L~~rLr~----Rgt~~~e~i~kRL-~aa~eL----Eq~~~~~FD~VIvNDd-Ld~A~~eL~~ile  292 (510)
                      +.-.+||+-++....+.++++.    +|.. ...+..++ ......    ...+....|+||.|++ ...+++.|...|.
T Consensus       124 ~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t-~~~~~~~~~~~~~~~~~~~~~~~~~~aD~ii~~~~~~~~~~~~~~~~i~  202 (211)
T 3asz_A          124 LMDLKVFVDADADERFIRRLKRDVLERGRS-LEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRGGQNPVALEMLAAKAL  202 (211)
T ss_dssp             TCSEEEEEECCHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEESTTSCHHHHHHHHHHHT
T ss_pred             hcCEEEEEeCCHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHhhhhhHHHhcccchhcCeEEEeCCCcchHHHHHHHHHHH
Confidence            4457899999988878777653    3543 22233333 211111    1122356799999875 4566666665555


Q ss_pred             HHHH
Q psy6613         293 AYWR  296 (510)
Q Consensus       293 ai~~  296 (510)
                      .++.
T Consensus       203 ~~~~  206 (211)
T 3asz_A          203 ARLA  206 (211)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5553

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=96.71  E-value=0.0023  Score=54.34  Aligned_cols=59  Identities=20%  Similarity=0.271  Sum_probs=41.1

Q ss_pred             hccCCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCC----CceEEEEccCCCceeeecChhHH
Q psy6613          41 ARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDS----NWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        41 a~~k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~----~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ++..+..+|. +..+|.+       +++.+|++++||++-|+.+.|+    .||-.+.   ++..||+|+..+.
T Consensus        12 ~~y~~~~LY~-~t~~~~~-------tq~~dl~l~~GdlVAVl~k~Dp~Gn~srW~Vdt---gg~~GyvPs~yLe   74 (92)
T 1ug1_A           12 ARYPPEKLFQ-AERNFNA-------AQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDN---GVTKGFVYSSFLK   74 (92)
T ss_dssp             HHSCGGGEEE-ESSCCCC-------CSSSCCCCCTTCEEEEEESCCTTSCSSEEEEEC---SSSEEEEEGGGEE
T ss_pred             hhCCchheEE-eccCcCC-------CCceeeeecCCCEEEEEecCCCCCCCcceEEEC---CCcEEeeEhhhce
Confidence            4455555544 5555555       3456799999999999999765    3443332   6899999998763

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.71  E-value=0.012  Score=56.75  Aligned_cols=91  Identities=14%  Similarity=0.155  Sum_probs=48.1

Q ss_pred             HHcCCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHH---h-cCCCcHHHHHHHH-HHHH-HHHh---cCCC
Q psy6613         199 ASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIK---S-RGKSQTRHLNVQM-VAAE-KLAQ---CPQE  269 (510)
Q Consensus       199 i~sGKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr---~-Rgt~~~e~i~kRL-~aa~-eLEq---~~~~  269 (510)
                      +..+..||+|-.-.+  .-++.  -..+.|||..|.-..++++.+   . +...+.+++..+| ..-. +...   -+..
T Consensus       142 ~a~~~~~V~~gr~~~--~~v~~--~~~~~ifl~A~~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~  217 (252)
T 4e22_A          142 FREAPGLIADGRDMG--TIVFP--DAPVKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVP  217 (252)
T ss_dssp             TCCSSCEEEEESSCC--CCCST--TCSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCC
T ss_pred             HhhCCCEEEEeceec--eeecC--CCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhc
Confidence            344667888765444  11111  136889999975555555443   1 3334455666666 2111 1111   1112


Q ss_pred             Ccc-EEEeCC--CHHHHHHHHHHHHHH
Q psy6613         270 MFD-VILDEN--QLEDACEHIAEYLEA  293 (510)
Q Consensus       270 ~FD-~VIvND--dLd~A~~eL~~ilea  293 (510)
                      .-| ++|.|+  +++++++++.+++..
T Consensus       218 ~~d~~~Idts~~~~eev~~~I~~~i~~  244 (252)
T 4e22_A          218 AADALVLDSTSMSIEQVIEQALAYAQR  244 (252)
T ss_dssp             CTTEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred             cCCeEEEECcCCCHHHHHHHHHHHHHH
Confidence            335 777777  589999988866654

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.70  E-value=0.0011  Score=67.87  Aligned_cols=59  Identities=7%  Similarity=-0.092  Sum_probs=44.7

Q ss_pred             EecCcCChHHHHHHHhc-CCC--------CceeeecCCCchhhh-----------------hhhc------ccHHHHHHH
Q psy6613         151 ITRVTADISLAKRSLMS-NPS--------KRAIMERSNSRSSVL-----------------TEVQ------TEIERVYEL  198 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~--------~F~~sVshTTR~pFe-----------------~~I~------TslesI~~v  198 (510)
                      +||+|+|||+|...|.+ .+.        .+...++.||++|-.                 +.+.      .....|.++
T Consensus         9 ~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a~~~i~~i   88 (322)
T 3exa_A            9 VGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLATPLITEI   88 (322)
T ss_dssp             ECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHHHHHHHHH
T ss_pred             ECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHHHHHHHHH
Confidence            89999999999999988 553        134467889998811                 1111      567889999


Q ss_pred             HHcCCeEEEEe
Q psy6613         199 ASTLQLVVLDC  209 (510)
Q Consensus       199 i~sGKi~ILDI  209 (510)
                      .+.|+++||--
T Consensus        89 ~~~gk~pIlVG   99 (322)
T 3exa_A           89 HERGRLPFLVG   99 (322)
T ss_dssp             HHTTCEEEEES
T ss_pred             HhCCCcEEEEc
Confidence            99999999843

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.69  E-value=0.0046  Score=60.15  Aligned_cols=109  Identities=14%  Similarity=0.093  Sum_probs=62.8

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------h----hhhhc-ccHHHHHHHH---HcCCeEEEEec
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------V----LTEVQ-TEIERVYELA---STLQLVVLDCD  210 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------F----e~~I~-TslesI~~vi---~sGKi~ILDID  210 (510)
                      +|++|+||||+.++|.+ .+. +.+.-....|..           +    +..+. .-.+.+...+   ..|+.+|+|..
T Consensus         8 ~G~~GsGKST~a~~L~~~~~~-~~~i~~D~~r~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~vi~d~~   86 (301)
T 1ltq_A            8 IGCPGSGKSTWAREFIAKNPG-FYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDT   86 (301)
T ss_dssp             ECCTTSSHHHHHHHHHHHSTT-EEEECHHHHHHHHTTSCCCC---CCHHHHHHHHHHHHHHHHHHTTSCTTCCEEEECSC
T ss_pred             ECCCCCCHHHHHHHHHHhCCC-cEEecccHHHHHhccCCcccccccchhhhhHHHHHHHHHHHHHHhhccCCCEEEEeCC
Confidence            89999999999999987 432 322211111111           0    11111 1234566677   88999999987


Q ss_pred             cCCch-hHhhh----c-CCCceEEEEeCCCHHHHHHHHHhcCC--CcHHHHHHHHHHHH
Q psy6613         211 TINHP-SQLAK----T-NLSPCIVYLKISSPKVLQRLIKSRGK--SQTRHLNVQMVAAE  261 (510)
Q Consensus       211 ~qg~~-lq~lk----s-~l~PivIFIkPPS~e~L~~rLr~Rgt--~~~e~i~kRL~aa~  261 (510)
                      ..... .+.++    . ....++||+.+ +.+++.+|+..|+.  .+.+.+.+++..-+
T Consensus        87 ~~~~~~~~~l~~~~~~~~~~~~~i~l~~-~~e~~~~R~~~R~~~~~~~e~i~~~~~~~~  144 (301)
T 1ltq_A           87 NLNPERRLAWETFAKEYGWKVEHKVFDV-PWTELVKRNSKRGTKAVPIDVLRSMYKSMR  144 (301)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEEECCC-CHHHHHHHHHHCGGGCCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCcEEEEEEEC-CHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence            64410 11122    1 12236788876 78999999988863  33445555554333

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=96.58  E-value=0.0029  Score=59.36  Aligned_cols=138  Identities=13%  Similarity=0.076  Sum_probs=73.6

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchh----hh----------------------hhhcccHHHHHHHHHcCCe
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS----VL----------------------TEVQTEIERVYELASTLQL  204 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p----Fe----------------------~~I~TslesI~~vi~sGKi  204 (510)
                      =|+-|+||||..+.|.++-..-+..+ .+||.|    +-                      +......+.|...+++|++
T Consensus         6 EG~DGsGKsTq~~~L~~~L~~~g~~v-~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L~~g~~   84 (197)
T 3hjn_A            6 EGIDGSGKSTQIQLLAQYLEKRGKKV-ILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLSEGYA   84 (197)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHHTTCCE-EEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred             ECCCCCCHHHHHHHHHHHHHHCCCcE-EEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence            49999999998887765110111112 134444    00                      0001344668888899999


Q ss_pred             EEEEeccCCc----------hhHhhh---c----CCCce-EEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHh
Q psy6613         205 VVLDCDTINH----------PSQLAK---T----NLSPC-IVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQ  265 (510)
Q Consensus       205 ~ILDID~qg~----------~lq~lk---s----~l~Pi-vIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq  265 (510)
                      ||.|=-..++          ....+.   .    .+.|- +||+.. +.++..+|...++.....+..+++ ++=.++..
T Consensus        85 Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~-~~e~~~~R~~~~dr~e~~ef~~rv~~~y~~la~  163 (197)
T 3hjn_A           85 VLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDV-DVETALKRKGELNRFEKREFLERVREGYLVLAR  163 (197)
T ss_dssp             EEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEEC-CHHHHHHHC---CTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCc-ChHHHHHhCcCcCccccHHHHHHHHHHHHHHHH
Confidence            9999432110          011111   1    34564 455554 467766676555443334566666 44456666


Q ss_pred             cCCCCccEEEeC--CCHHHHHHHHHHHHH
Q psy6613         266 CPQEMFDVILDE--NQLEDACEHIAEYLE  292 (510)
Q Consensus       266 ~~~~~FD~VIvN--DdLd~A~~eL~~ile  292 (510)
                      .++..  +++++  .++++..+++.+.|+
T Consensus       164 ~~~~~--~~~IDa~~~~eeV~~~I~~~i~  190 (197)
T 3hjn_A          164 EHPER--IVVLDGKRSIEEIHRDVVREVK  190 (197)
T ss_dssp             HCTTT--EEEEETTSCHHHHHHHHHHHHS
T ss_pred             hCCCC--EEEEcCCCCHHHHHHHHHHHHH
Confidence            55443  34443  467777777775554

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=96.56  E-value=0.0013  Score=70.07  Aligned_cols=51  Identities=14%  Similarity=0.136  Sum_probs=43.6

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ...|+|+|||.+.          ++++++||++.+++..+++||..+.  .+|..|++|+-.+
T Consensus       283 ~~~V~alcdy~~~----------e~~i~kge~~~L~~ns~~~~W~V~~--~~G~~~~vPavcf  333 (450)
T 3r6n_A          283 PIILRALCDYKQD----------QKIVHKGDECILKDNNERSKWYVTG--PGGVDMLVPSVGL  333 (450)
T ss_dssp             CCEEEESSCEEET----------TEEECTTCEEEEEECSSSSEEEEEC--SSSCCEEEEGGGE
T ss_pred             CceEEEeccccCC----------eeeEecCCEEEEecCCCCCceEEec--CCCCeeccceeEE
Confidence            5789999999963          5899999999999999999999775  4678899997544

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.54  E-value=0.058  Score=50.90  Aligned_cols=89  Identities=19%  Similarity=0.243  Sum_probs=49.9

Q ss_pred             HHcCCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHH---HhcC-CCcHHHHHHHHHHHHHHHh------cCC
Q psy6613         199 ASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLI---KSRG-KSQTRHLNVQMVAAEKLAQ------CPQ  268 (510)
Q Consensus       199 i~sGKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rL---r~Rg-t~~~e~i~kRL~aa~eLEq------~~~  268 (510)
                      +..|..||+|.-.-+  ..++..  .-++|||..|.-..+++++   ..|+ ..+.+++..++..-+....      .|.
T Consensus       132 ~~~~~~~v~~g~~~~--~~~l~~--~d~vi~L~a~~e~~~~R~~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~  207 (236)
T 1q3t_A          132 IAQQGGIVMDGRDIG--TVVLPQ--AELKIFLVASVDERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQ  207 (236)
T ss_dssp             HHTTSCEEEECSSCS--SSSGGG--CSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSC
T ss_pred             hcccCCEEEECCcch--hhhccC--CCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhcccccccc
Confidence            456778888754332  112221  2478999986444444432   4666 3345556666632222111      221


Q ss_pred             CCcc-EEEeCC--CHHHHHHHHHHHHH
Q psy6613         269 EMFD-VILDEN--QLEDACEHIAEYLE  292 (510)
Q Consensus       269 ~~FD-~VIvND--dLd~A~~eL~~ile  292 (510)
                       .-| ++|.|+  +++++++++.++++
T Consensus       208 -~~d~~vId~~~~s~eev~~~I~~~l~  233 (236)
T 1q3t_A          208 -AEDAVYLDTTGLNIQEVVEKIKAEAE  233 (236)
T ss_dssp             -CTTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred             -cCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence             124 888876  68999999886664

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.54  E-value=0.028  Score=51.80  Aligned_cols=88  Identities=18%  Similarity=0.200  Sum_probs=49.9

Q ss_pred             HHHcCCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHH----HhcCCC-cHHHHHHHHHHHH--HHH----hc
Q psy6613         198 LASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLI----KSRGKS-QTRHLNVQMVAAE--KLA----QC  266 (510)
Q Consensus       198 vi~sGKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rL----r~Rgt~-~~e~i~kRL~aa~--eLE----q~  266 (510)
                      .+..|..||+|..-.+  ..+++  ...++|||..| .+++.+|+    ..||.. +.+++..++.+..  ...    ..
T Consensus       114 ~~~~~~~~vi~g~~~~--~~~~~--~~~~vi~l~a~-~e~~~~R~~~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~  188 (219)
T 2h92_A          114 ELAAEKGIVMDGRDIG--TVVLP--DADLKVYMIAS-VEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPL  188 (219)
T ss_dssp             HHHTTCCEEEEESSCC--CCCCT--TCSEEEEEECC-HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCS
T ss_pred             HhccCCcEEEEcCCcc--ceecC--CCCEEEEEECC-HHHHHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhhhhcccc
Confidence            3456778999874222  11222  23578888875 55555554    256642 4556666663222  111    22


Q ss_pred             CCCCcc-EEEeCC--CHHHHHHHHHHHH
Q psy6613         267 PQEMFD-VILDEN--QLEDACEHIAEYL  291 (510)
Q Consensus       267 ~~~~FD-~VIvND--dLd~A~~eL~~il  291 (510)
                      |.. .| ++|.|+  +++++++++.+++
T Consensus       189 ~~~-~d~~~Id~~~~~~ee~~~~I~~~l  215 (219)
T 2h92_A          189 RKA-DDAVTLDTTGKSIEEVTDEILAMV  215 (219)
T ss_dssp             CCC-TTCEEEECTTCCHHHHHHHHHHHH
T ss_pred             ccC-CCeEEEECCCCCHHHHHHHHHHHH
Confidence            322 45 888876  6999998888555

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.54  E-value=0.0019  Score=65.98  Aligned_cols=59  Identities=7%  Similarity=-0.016  Sum_probs=44.5

Q ss_pred             EecCcCChHHHHHHHhc-CCC--------CceeeecCCCchhhhhh-----------------hc------ccHHHHHHH
Q psy6613         151 ITRVTADISLAKRSLMS-NPS--------KRAIMERSNSRSSVLTE-----------------VQ------TEIERVYEL  198 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~--------~F~~sVshTTR~pFe~~-----------------I~------TslesI~~v  198 (510)
                      +||+|+|||+|...|.+ .+.        .+...+++||++|-.++                 +.      .....|.++
T Consensus        16 ~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~a~~~i~~i   95 (316)
T 3foz_A           16 MGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRDALAEMADI   95 (316)
T ss_dssp             ECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHHHHHHHH
T ss_pred             ECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHHHHHHHHHH
Confidence            89999999999999987 553        23445688999981111                 11      566789999


Q ss_pred             HHcCCeEEEEe
Q psy6613         199 ASTLQLVVLDC  209 (510)
Q Consensus       199 i~sGKi~ILDI  209 (510)
                      .+.|+++||--
T Consensus        96 ~~~g~~pilVG  106 (316)
T 3foz_A           96 TAAGRIPLLVG  106 (316)
T ss_dssp             HHTTCEEEEEE
T ss_pred             HhCCCcEEEEc
Confidence            99999999865

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.52  E-value=0.0013  Score=59.20  Aligned_cols=130  Identities=15%  Similarity=0.025  Sum_probs=64.6

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCch-------h-hhhh---hc--ccHHHHHHHHHcCCeEEEEeccCCch-
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRS-------S-VLTE---VQ--TEIERVYELASTLQLVVLDCDTINHP-  215 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~-------p-Fe~~---I~--TslesI~~vi~sGKi~ILDID~qg~~-  215 (510)
                      +|++|+||||+.+.|.+ ..-.|. ..-.--+.       . |...   +.  .....+.+++.... +|++... +.+ 
T Consensus         8 ~G~~GsGKsT~a~~La~~lg~~~i-d~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~vi~~g~-~~v~   84 (184)
T 2iyv_A            8 VGLPGSGKSTIGRRLAKALGVGLL-DTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHD-GVLSLGG-GAVT   84 (184)
T ss_dssp             ECSTTSSHHHHHHHHHHHHTCCEE-EHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCC-SEEECCT-TGGG
T ss_pred             ECCCCCCHHHHHHHHHHHcCCCEE-eCchHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHHhcCC-eEEecCC-cEEc
Confidence            99999999999998876 221111 10000000       0 1100   00  12234555555444 4444321 101 


Q ss_pred             ----hHhhhcCCCceEEEEeCCCHHHHHHHHHhcCC---Cc---HHHHHHHH-HHHHHHHhcCCCCccEEEeCC--CHHH
Q psy6613         216 ----SQLAKTNLSPCIVYLKISSPKVLQRLIKSRGK---SQ---TRHLNVQM-VAAEKLAQCPQEMFDVILDEN--QLED  282 (510)
Q Consensus       216 ----lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt---~~---~e~i~kRL-~aa~eLEq~~~~~FD~VIvND--dLd~  282 (510)
                          .+.++   .-.+|||.. +.+++.+|+..|+.   ..   ..+....+ ......   |....|++|.|+  ++++
T Consensus        85 ~~~~~~~l~---~~~vV~L~~-~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~---~~~~~~~~Idt~~~s~ee  157 (184)
T 2iyv_A           85 SPGVRAALA---GHTVVYLEI-SAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPL---YRRVATMRVDTNRRNPGA  157 (184)
T ss_dssp             SHHHHHHHT---TSCEEEEEC-CHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHH---HHHHCSEEEECSSSCHHH
T ss_pred             CHHHHHHHc---CCeEEEEeC-CHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHH---HhccCCEEEECCCCCHHH
Confidence                11222   347888887 57888888876642   11   11222222 211221   223468999876  5888


Q ss_pred             HHHHHHHH
Q psy6613         283 ACEHIAEY  290 (510)
Q Consensus       283 A~~eL~~i  290 (510)
                      +++++.++
T Consensus       158 ~~~~I~~~  165 (184)
T 2iyv_A          158 VVRHILSR  165 (184)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHH
Confidence            88887733

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.45  E-value=0.003  Score=57.20  Aligned_cols=96  Identities=13%  Similarity=-0.046  Sum_probs=50.3

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceee---ecCCCchh-hhhhhc-----ccHH----HHHHHHHcCCeEEEEeccCCchh
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIM---ERSNSRSS-VLTEVQ-----TEIE----RVYELASTLQLVVLDCDTINHPS  216 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~s---VshTTR~p-Fe~~I~-----Tsle----sI~~vi~sGKi~ILDID~qg~~l  216 (510)
                      +||+|+||||+.+.|.. ......+.   +....+.. +.+...     +-.+    .+......|..+|+|. +.+ +.
T Consensus         8 ~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ild~-~~~-~~   85 (189)
T 2bdt_A            8 TGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVLDY-IAF-PD   85 (189)
T ss_dssp             ECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEEES-CCC-HH
T ss_pred             ECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHHHHHhcCCcEEEee-ccC-HH
Confidence            89999999999999976 33211111   00000000 000000     1111    2333456788999997 323 11


Q ss_pred             H------hhhc-CCC-ceEEEEeCCCHHHHHHHHHhcCCC
Q psy6613         217 Q------LAKT-NLS-PCIVYLKISSPKVLQRLIKSRGKS  248 (510)
Q Consensus       217 q------~lks-~l~-PivIFIkPPS~e~L~~rLr~Rgt~  248 (510)
                      .      .+++ ... .+.+++..++.++|.+|++.|+.+
T Consensus        86 ~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d  125 (189)
T 2bdt_A           86 EAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKD  125 (189)
T ss_dssp             HHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-
T ss_pred             HHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcccc
Confidence            1      1111 111 444455668999999999888654

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.45  E-value=0.0063  Score=54.40  Aligned_cols=89  Identities=13%  Similarity=0.219  Sum_probs=46.5

Q ss_pred             cCCeEEEEeccCCchhHh---h-hc---CCCc-eEEEEeCCCHHHHHHHHHhcCC------CcHHHHHHHHHHH----HH
Q psy6613         201 TLQLVVLDCDTINHPSQL---A-KT---NLSP-CIVYLKISSPKVLQRLIKSRGK------SQTRHLNVQMVAA----EK  262 (510)
Q Consensus       201 sGKi~ILDID~qg~~lq~---l-ks---~l~P-ivIFIkPPS~e~L~~rLr~Rgt------~~~e~i~kRL~aa----~e  262 (510)
                      .|..+|+|--+-.  ...   + +.   ...| ++||+.. +.+++.+|+..|+.      .+.+.+.+++..-    ..
T Consensus        85 ~~~~vi~dg~~~~--~~~~~~~~~~~~~~~~~~~~i~l~~-~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~  161 (196)
T 1tev_A           85 QKNKFLIDGFPRN--QDNLQGWNKTMDGKADVSFVLFFDC-NNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKP  161 (196)
T ss_dssp             TCCEEEEESCCCS--HHHHHHHHHHHTTTCEEEEEEEEEC-CHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEeCCCCC--HHHHHHHHHHhcccCCCCEEEEEEC-CHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHH
Confidence            5889999965544  221   1 11   1223 5788876 46777777765531      2344455555211    11


Q ss_pred             HHhcCCCCccE-EEeCC-CHHHHHHHHHHHHH
Q psy6613         263 LAQCPQEMFDV-ILDEN-QLEDACEHIAEYLE  292 (510)
Q Consensus       263 LEq~~~~~FD~-VIvND-dLd~A~~eL~~ile  292 (510)
                      +...|...-++ +|.++ ++++.++++.++|.
T Consensus       162 ~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  193 (196)
T 1tev_A          162 IIDLYEEMGKVKKIDASKSVDEVFDEVVQIFD  193 (196)
T ss_dssp             HHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence            11122112244 55443 57888888886554

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.40  E-value=0.0023  Score=56.66  Aligned_cols=65  Identities=11%  Similarity=0.088  Sum_probs=38.0

Q ss_pred             ceEEEEeCCCHHHHHHHHH--hc-C---CCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCC--CHHHHHHHHHHHH
Q psy6613         225 PCIVYLKISSPKVLQRLIK--SR-G---KSQTRHLNVQM-VAAEKLAQCPQEMFDVILDEN--QLEDACEHIAEYL  291 (510)
Q Consensus       225 PivIFIkPPS~e~L~~rLr--~R-g---t~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvND--dLd~A~~eL~~il  291 (510)
                      -++|||..| .+++.+|+.  .| +   ....+....++ ..-.+.+..|.. .|++|.|+  +++++++++..++
T Consensus        95 ~~~i~l~~~-~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Id~~~~~~~~~~~~i~~~l  168 (173)
T 1e6c_A           95 GTVVYLFAP-AEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQD-VAHYVVDATQPPAAIVCELMQTM  168 (173)
T ss_dssp             SEEEEEECC-HHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHH-HCSEEEETTSCHHHHHHHHHHHT
T ss_pred             CeEEEEECC-HHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHHHh-CcEEEECCCCCHHHHHHHHHHHh
Confidence            378888875 677778887  66 2   12223334445 222222222223 68899876  6888888887444

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.39  E-value=0.013  Score=52.78  Aligned_cols=142  Identities=12%  Similarity=0.027  Sum_probs=69.0

Q ss_pred             CCeE--EecCcCChHHHHHHHhcCCCCceeeec---------CCCchhh--hhhh-c-ccHHHH----HHHHHcCCeEEE
Q psy6613         147 GMII--ITRVTADISLAKRSLMSNPSKRAIMER---------SNSRSSV--LTEV-Q-TEIERV----YELASTLQLVVL  207 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~~P~~F~~sVs---------hTTR~pF--e~~I-~-TslesI----~~vi~sGKi~IL  207 (510)
                      +.++  +||+|+||||+.+.|...+..=.+.+.         ..+...+  +... . +-.+.+    ......|..+++
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~   88 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVIL   88 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhccCCeEEE
Confidence            4444  999999999999988874321111111         0000110  0000 0 111222    122456777888


Q ss_pred             EeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHhcCCCCc-cEEEe--CCCHHH
Q psy6613         208 DCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQT--RHLNVQMVAAEKLAQCPQEMF-DVILD--ENQLED  282 (510)
Q Consensus       208 DID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~--e~i~kRL~aa~eLEq~~~~~F-D~VIv--NDdLd~  282 (510)
                      |.-.....+..++..-.++.++....+.+++..|+..|+....  .....  ...+.+...+  .| +++|.  |.++++
T Consensus        89 ~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~lld~~~~~--~~~~~~~~l~--~~~~~~i~t~~~~~~~  164 (191)
T 1zp6_A           89 DGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVA--DLHSQFADLG--AFEHHVLPVSGKDTDQ  164 (191)
T ss_dssp             CSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSCCCHHHHH--HHHHHTTCCG--GGGGGEEECTTCCTTT
T ss_pred             eccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCccCCHHHHH--HHHHHHhccC--cccccEEECCCCCHHH
Confidence            7522210022222112244455666788999999887754321  11111  1122233322  23 34554  357888


Q ss_pred             HHHHHHHHHH
Q psy6613         283 ACEHIAEYLE  292 (510)
Q Consensus       283 A~~eL~~ile  292 (510)
                      +++++.+++.
T Consensus       165 ~~~~i~~~l~  174 (191)
T 1zp6_A          165 ALQSAINALQ  174 (191)
T ss_dssp             TTTTTHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888886654

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.39  E-value=0.058  Score=48.85  Aligned_cols=84  Identities=12%  Similarity=0.145  Sum_probs=47.4

Q ss_pred             CeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC-CCCcc-EEEeCC--
Q psy6613         203 QLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCP-QEMFD-VILDEN--  278 (510)
Q Consensus       203 Ki~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~-~~~FD-~VIvND--  278 (510)
                      ..||+|...-.   ..+. ...-++|||..| .+++.+|+..|...+.+++..++..-......+ ...-| ++|.|+  
T Consensus       119 ~~~vi~g~~~~---~~~~-~~~d~~i~l~a~-~e~~~~R~~~r~~~~~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~  193 (208)
T 3ake_A          119 PPFVAEGRDMG---TAVF-PEAAHKFYLTAS-PEVRAWRRARERPQAYEEVLRDLLRRDERDKAQSAPAPDALVLDTGGM  193 (208)
T ss_dssp             SCEEEEESSCC---CCCC-TTCSEEEEEECC-HHHHHHHHHHTSSSCHHHHHHHHHHHHHTC--CCCCCTTCEEEETTTS
T ss_pred             CCEEEEcccee---EEEe-cCCcEEEEEECC-HHHHHHHHHhhcccCHHHHHHHHHHHHHHHhhcccCCCCEEEEECCCC
Confidence            46777765322   1111 123478899876 566666666665444555555553322222111 23455 888887  


Q ss_pred             CHHHHHHHHHHHH
Q psy6613         279 QLEDACEHIAEYL  291 (510)
Q Consensus       279 dLd~A~~eL~~il  291 (510)
                      +++++++++.+++
T Consensus       194 ~~ee~~~~I~~~~  206 (208)
T 3ake_A          194 TLDEVVAWVLAHI  206 (208)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            6999998888655

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.36  E-value=0.01  Score=57.09  Aligned_cols=94  Identities=14%  Similarity=0.018  Sum_probs=53.6

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh------------------hhhhhc-ccHHHHHHHHHcCCeEEEEec
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS------------------VLTEVQ-TEIERVYELASTLQLVVLDCD  210 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p------------------Fe~~I~-TslesI~~vi~sGKi~ILDID  210 (510)
                      +||+|+||||+.+.|.. .+..+.+.-...-|..                  ++.... .-...+..+++.|..+|+|..
T Consensus        38 ~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~vVid~~  117 (253)
T 2p5t_B           38 GGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTKLSSLGYNLLIEGT  117 (253)
T ss_dssp             ESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred             ECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence            99999999999999987 5432333222222221                  000000 012344556778999999988


Q ss_pred             cCCch-----hHhhhc-CCCceEEEEeCCCHHHHHHHHHhc
Q psy6613         211 TINHP-----SQLAKT-NLSPCIVYLKISSPKVLQRLIKSR  245 (510)
Q Consensus       211 ~qg~~-----lq~lks-~l~PivIFIkPPS~e~L~~rLr~R  245 (510)
                      +.+..     .+.++. .....+||+.. +.+++.+|...|
T Consensus       118 ~~~~~~~~~~~~~l~~~g~~v~lv~l~~-~~e~~~~R~~~R  157 (253)
T 2p5t_B          118 LRTVDVPKKTAQLLKNKGYEVQLALIAT-KPELSYLSTLIR  157 (253)
T ss_dssp             TTSSHHHHHHHHHHHHTTCEEEEEEECC-CHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCcEEEEEEeC-CHHHHHHHHHHH
Confidence            76511     112333 34444567766 677777776554

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.33  E-value=0.00042  Score=63.67  Aligned_cols=135  Identities=12%  Similarity=0.048  Sum_probs=69.9

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchhh-------------------------h-hhhc-----ccHHHHHHH
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSSV-------------------------L-TEVQ-----TEIERVYEL  198 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~pF-------------------------e-~~I~-----TslesI~~v  198 (510)
                      +|++|+||||+.+.|.+ .. ..++.+.+++.+.|                         . ..+.     ...+.|...
T Consensus         6 ~G~~GsGKsTl~~~L~~~l~-~~g~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~   84 (214)
T 1gtv_A            6 EGVDGAGKRTLVEKLSGAFR-AAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHTIQGL   84 (214)
T ss_dssp             EEEEEEEHHHHHHHHHHHHH-EEEEEEEEEESSEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEHHHHHHE
T ss_pred             EcCCCCCHHHHHHHHHHHHH-hcCCeEEEEeecCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhHHHHHHH
Confidence            89999999999999887 32 12222222211110                         0 0000     113445666


Q ss_pred             HHcCCeEEEEeccCCch----h-----------Hhhhc------CC-Cc-eEEEEeCCCHHHHHHHHHhcCC-------C
Q psy6613         199 ASTLQLVVLDCDTINHP----S-----------QLAKT------NL-SP-CIVYLKISSPKVLQRLIKSRGK-------S  248 (510)
Q Consensus       199 i~sGKi~ILDID~qg~~----l-----------q~lks------~l-~P-ivIFIkPPS~e~L~~rLr~Rgt-------~  248 (510)
                      +..|++||+|-.+....    .           ..++.      .+ .| .+||+..| .+++.+|+..|+.       +
T Consensus        85 l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~-~~~~~~R~~~R~~~~~~~~~d  163 (214)
T 1gtv_A           85 CRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVS-AELAGERSRGRAQRDPGRARD  163 (214)
T ss_dssp             EEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEE-HHHHHHHHHHHHHEBBEEEEE
T ss_pred             hhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCC-HHHHHHHHHcccccccccccc
Confidence            67899999998763210    1           11221      11 23 45566554 5788888877643       1


Q ss_pred             c---HHHHHHHH-HHHHHHHhcCCCCccEEEeCC--CHHHHHHHHH
Q psy6613         249 Q---TRHLNVQM-VAAEKLAQCPQEMFDVILDEN--QLEDACEHIA  288 (510)
Q Consensus       249 ~---~e~i~kRL-~aa~eLEq~~~~~FD~VIvND--dLd~A~~eL~  288 (510)
                      .   ..+..+++ .+-.++...++ ..+++++|+  ++++.++++.
T Consensus       164 ~~e~~~~~~~~~~~~~~~~~~~~~-~~~~~vId~~~~~~~v~~~i~  208 (214)
T 1gtv_A          164 NYERDAELQQRTGAVYAELAAQGW-GGRWLVVGADVDPGRLAATLA  208 (214)
T ss_dssp             EEEEEHHHHHHHHHHHHHHHHEEE-EEEEEEEEEEEBHHHHHHHHC
T ss_pred             cccccHHHHHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHhc
Confidence            1   14566666 44445554432 245444443  4555555443

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=96.33  E-value=0.031  Score=52.31  Aligned_cols=97  Identities=9%  Similarity=0.123  Sum_probs=55.0

Q ss_pred             HHHHHHHHH-cCCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHH----HHH-Hh
Q psy6613         192 IERVYELAS-TLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAA----EKL-AQ  265 (510)
Q Consensus       192 lesI~~vi~-sGKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa----~eL-Eq  265 (510)
                      .+.|++++. ....||++--- |  .-+++..-+.+.|||..| ++++.+|+..+..-+.++..++|..-    ... ..
T Consensus        87 ~~~i~~la~~~~~~~Vi~Gr~-g--~~vl~~~~~~~~V~L~A~-~e~r~~R~~~~~~~~~~~~~~~i~~~d~~R~~~y~~  162 (201)
T 3fdi_A           87 FNFIRKKANEEKESFVIVGRC-A--EEILSDNPNMISAFILGD-KDTKTKRVMEREGVDEKTALNMMKKMDKMRKVYHNF  162 (201)
T ss_dssp             HHHHHHHHHTSCCCEEEESTT-H--HHHTTTCTTEEEEEEEEC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCCEEEEECC-c--chhcCCCCCeEEEEEECC-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            445566662 34468887542 3  334443335689999995 66666666544223344444444111    111 11


Q ss_pred             ------cCCCCccEEEeCC--CHHHHHHHHHHHHH
Q psy6613         266 ------CPQEMFDVILDEN--QLEDACEHIAEYLE  292 (510)
Q Consensus       266 ------~~~~~FD~VIvND--dLd~A~~eL~~ile  292 (510)
                            .++..||++|.++  +++++++.+.++++
T Consensus       163 ~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~  197 (201)
T 3fdi_A          163 YCESKWGDSRTYDICIKIGKVDVDTATDMIIKYID  197 (201)
T ss_dssp             HCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHH
T ss_pred             HhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHH
Confidence                  1233489999876  57888888886654

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=96.32  E-value=0.028  Score=53.86  Aligned_cols=86  Identities=7%  Similarity=0.079  Sum_probs=54.0

Q ss_pred             CCeEEEEeccCCchhHhhh-cCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HH---HHHHHhcCCCCccEEEe
Q psy6613         202 LQLVVLDCDTINHPSQLAK-TNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VA---AEKLAQCPQEMFDVILD  276 (510)
Q Consensus       202 GKi~ILDID~qg~~lq~lk-s~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~a---a~eLEq~~~~~FD~VIv  276 (510)
                      +..||+|+..--   +... ..+.-.+|||..|. ++..+|+..|...+.++...|+ .+   .++++     .-|+||.
T Consensus       112 ~~~vv~d~pLL~---E~~~~~~~~D~vi~V~ap~-e~r~~Rl~~Rdg~s~eea~~ri~~Q~~~eek~~-----~AD~VId  182 (210)
T 4i1u_A          112 GPYVIFVVPLLV---ESRNWKARCDRVLVVDCPV-DTQIARVMQRNGFTREQVEAIIARQATREARLA-----AADDVIV  182 (210)
T ss_dssp             SSSEEEECTTCT---TCHHHHHHCSEEEEEECCH-HHHHHHHHHHHCCCHHHHHHHHHHSCCHHHHHH-----TCSEEEE
T ss_pred             CCEEEEEEeccc---ccCCccccCCeEEEEECCH-HHHHHHHHhcCCCCHHHHHHHHHHcCChHHHHH-----hCCEEEE
Confidence            568999986521   1011 12345688888874 5555566666445566666666 22   12222     4489999


Q ss_pred             CC--CHHHHHHHHHHHHHHHHH
Q psy6613         277 EN--QLEDACEHIAEYLEAYWR  296 (510)
Q Consensus       277 ND--dLd~A~~eL~~ileai~~  296 (510)
                      |+  ++++...++..+++.+..
T Consensus       183 N~~gsle~l~~qV~~l~~~~~~  204 (210)
T 4i1u_A          183 NDAATPDALAVQVDALHQRYLA  204 (210)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Confidence            98  899999999988776654

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.29  E-value=0.0023  Score=67.35  Aligned_cols=58  Identities=7%  Similarity=-0.084  Sum_probs=42.9

Q ss_pred             EecCcCChHHHHHHHhc-CCCC--------ceeeecCCCchhhh-----------------hhhc------ccHHHHHHH
Q psy6613         151 ITRVTADISLAKRSLMS-NPSK--------RAIMERSNSRSSVL-----------------TEVQ------TEIERVYEL  198 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~--------F~~sVshTTR~pFe-----------------~~I~------TslesI~~v  198 (510)
                      +||+|+|||||..+|.+ .+..        +...+++||++|-.                 +.+.      --...|.++
T Consensus         8 ~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~~~i~~i   87 (409)
T 3eph_A            8 AGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECMNAIEDI   87 (409)
T ss_dssp             EECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHHHHHHHH
T ss_pred             ECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHHHHHHHH
Confidence            89999999999999987 5532        33346889998811                 1111      346788999


Q ss_pred             HHcCCeEEEE
Q psy6613         199 ASTLQLVVLD  208 (510)
Q Consensus       199 i~sGKi~ILD  208 (510)
                      ...|+++||-
T Consensus        88 ~~~g~~pilV   97 (409)
T 3eph_A           88 HRRGKIPIVV   97 (409)
T ss_dssp             HTTTCEEEEE
T ss_pred             HhcCCCEEEE
Confidence            9999999993

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.28  E-value=0.051  Score=49.83  Aligned_cols=17  Identities=6%  Similarity=0.003  Sum_probs=16.1

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|+||||+.+.|..
T Consensus        27 ~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           27 SGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             EESTTSSHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            89999999999999887

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.27  E-value=0.026  Score=52.11  Aligned_cols=90  Identities=18%  Similarity=0.245  Sum_probs=47.8

Q ss_pred             cCCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHH---HHhcCCC-cHHHHHHHH-HH----H-HHHHhcCCCC
Q psy6613         201 TLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRL---IKSRGKS-QTRHLNVQM-VA----A-EKLAQCPQEM  270 (510)
Q Consensus       201 sGKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~r---Lr~Rgt~-~~e~i~kRL-~a----a-~eLEq~~~~~  270 (510)
                      .+..+|+|....+  -..+  ....++||+..|.-..++++   +..||.. +.+....++ ..    . .+.+..+ ..
T Consensus       122 ~~~~~vldg~~~~--~~~~--~~~d~~i~l~~~~e~~~~R~~~~l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~-~~  196 (227)
T 1cke_A          122 ELPGLIADGRDMG--TVVF--PDAPVKIFLDASSEERAHRRMLQLQVKGFSVNFERLLAEIKERDDRDRNRAVAPLV-PA  196 (227)
T ss_dssp             CTTCEEEEESSCC--CCCC--TTCSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC-------------CC-CC
T ss_pred             hCCCEEEECCCcc--ceEe--cCCCEEEEEeCCHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHhhhhhcccCcc-CC
Confidence            4678899986433  1111  22468899998754444443   2355642 334444445 21    1 1222222 12


Q ss_pred             c-cEEEeCC--CHHHHHHHHHHHHHHHH
Q psy6613         271 F-DVILDEN--QLEDACEHIAEYLEAYW  295 (510)
Q Consensus       271 F-D~VIvND--dLd~A~~eL~~ileai~  295 (510)
                      + +++|.|+  ++++.++++.+++..+.
T Consensus       197 ~~~~~Id~~~~~~~ev~~~I~~~l~~~~  224 (227)
T 1cke_A          197 ADALVLDSTTLSIEQVIEKALQYARQKL  224 (227)
T ss_dssp             TTCEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHHHHHhh
Confidence            2 2777776  68999999987776543

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.24  E-value=0.013  Score=54.35  Aligned_cols=92  Identities=13%  Similarity=0.055  Sum_probs=49.2

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh--------------hhhhhcc----cHHHHHHHHHc---CCeEEEE
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS--------------VLTEVQT----EIERVYELAST---LQLVVLD  208 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p--------------Fe~~I~T----slesI~~vi~s---GKi~ILD  208 (510)
                      +|++|+||||+.+.|.+ .. ...+......|..              |......    -.+.|...+.+   ++.+|+|
T Consensus         6 ~G~~GsGKsT~a~~L~~~~g-~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~~i~d   84 (214)
T 1e4v_A            6 LGAPVAGKGTQAQFIMEKYG-IPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLD   84 (214)
T ss_dssp             EESTTSSHHHHHHHHHHHHC-CCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGCEEEE
T ss_pred             ECCCCCCHHHHHHHHHHHhC-CeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCCEEEe
Confidence            89999999999999987 32 2223333333441              1100001    12233444443   3568888


Q ss_pred             eccCCchh--Hhhhc-CCCc-eEEEEeCCCHHHHHHHHHhc
Q psy6613         209 CDTINHPS--QLAKT-NLSP-CIVYLKISSPKVLQRLIKSR  245 (510)
Q Consensus       209 ID~qg~~l--q~lks-~l~P-ivIFIkPPS~e~L~~rLr~R  245 (510)
                      --+.. ..  ..+.. ...| ++|||..| .+++.+|+..|
T Consensus        85 g~~~~-~~~~~~l~~~~~~~d~vi~l~~~-~e~~~~R~~~R  123 (214)
T 1e4v_A           85 GFPRT-IPQADAMKEAGINVDYVLEFDVP-DELIVDRIVGR  123 (214)
T ss_dssp             SCCCS-HHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHTE
T ss_pred             CCCCC-HHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHCC
Confidence            65444 11  22333 3444 67777765 56667776644

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.24  E-value=0.0037  Score=60.38  Aligned_cols=147  Identities=7%  Similarity=-0.006  Sum_probs=72.8

Q ss_pred             CCCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh----hhhh----------hc-------------ccHHH-
Q psy6613         146 PGMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS----VLTE----------VQ-------------TEIER-  194 (510)
Q Consensus       146 ~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p----Fe~~----------I~-------------Tsles-  194 (510)
                      .+.+|  .|++|+||||+.+.|.+ .....++.+-.|||.|    +-+.          +.             ..++. 
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~~~~   99 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHFVKI   99 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            45555  79999999999999887 2210223344445554    1110          10             22223 


Q ss_pred             HHHHHHcCCeEEEEeccCCch----------hHhhh---c---CCCc-eEEEEeCCCHHHHHHHHHhcCC-Cc-HHHHHH
Q psy6613         195 VYELASTLQLVVLDCDTINHP----------SQLAK---T---NLSP-CIVYLKISSPKVLQRLIKSRGK-SQ-TRHLNV  255 (510)
Q Consensus       195 I~~vi~sGKi~ILDID~qg~~----------lq~lk---s---~l~P-ivIFIkPPS~e~L~~rLr~Rgt-~~-~e~i~k  255 (510)
                      |...+++|++||+|=-+.++.          .+.++   .   .+.| .+||+..| .++..+|+ .++. +. ..+..+
T Consensus       100 I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~-~e~~~~Ri-~rdr~E~~~~e~~~  177 (223)
T 3ld9_A          100 IKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVD-INESLSRS-CKNGYEFADMEFYY  177 (223)
T ss_dssp             HHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC------------------CHHHHH
T ss_pred             HHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCC-HHHHHHHh-ccCccccchHHHHH
Confidence            556778999999986432100          11111   1   1344 56666664 45566665 3332 11 134556


Q ss_pred             HH-HHHHHHHhcCCCCccEEEe-CCCHHHHHHHHHHHHHHHHH
Q psy6613         256 QM-VAAEKLAQCPQEMFDVILD-ENQLEDACEHIAEYLEAYWR  296 (510)
Q Consensus       256 RL-~aa~eLEq~~~~~FD~VIv-NDdLd~A~~eL~~ileai~~  296 (510)
                      |+ +.-.++...++. -..+|. +.++++. +++.++|+.++.
T Consensus       178 rv~~~y~~la~~~~~-~~~vIDa~~sieeV-~~I~~~l~~~lg  218 (223)
T 3ld9_A          178 RVRDGFYDIAKKNPH-RCHVITDKSETYDI-DDINFVHLEVIK  218 (223)
T ss_dssp             HHHHHHHHHHHHCTT-TEEEEESSCSSSCC-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCC-CEEEEcCCCCHHHH-HHHHHHHHHHHh
Confidence            66 444556555532 234554 3567777 777777766654

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.18  E-value=0.0019  Score=57.01  Aligned_cols=61  Identities=13%  Similarity=0.140  Sum_probs=35.5

Q ss_pred             ceEEEEeCCCHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHhcCCCCccEEEeCC--CHHHHHHHHHHHH
Q psy6613         225 PCIVYLKISSPKVLQRLIKSRGKSQ-----TRHLNVQMVAAEKLAQCPQEMFDVILDEN--QLEDACEHIAEYL  291 (510)
Q Consensus       225 PivIFIkPPS~e~L~~rLr~Rgt~~-----~e~i~kRL~aa~eLEq~~~~~FD~VIvND--dLd~A~~eL~~il  291 (510)
                      .++|||..| .+++.+|+..|+.-.     .+.+..++...   ...|.. .|++| |+  ++++.++++.+++
T Consensus        94 ~~~i~l~~~-~e~~~~R~~~r~~r~~~~~~~~~i~~~~~~~---~~~~~~-~~~~i-~~~~~~~~~~~~i~~~l  161 (168)
T 2pt5_A           94 GTTVFIDIP-FEVFLERCKDSKERPLLKRPLDEIKNLFEER---RKIYSK-ADIKV-KGEKPPEEVVKEILLSL  161 (168)
T ss_dssp             SEEEEEECC-HHHHHHHCBCTTCCBGGGSCGGGTHHHHHHH---HHHHTT-SSEEE-ECSSCHHHHHHHHHHHH
T ss_pred             CEEEEEECC-HHHHHHHHhCCCCCCCCcchHHHHHHHHHHH---HHHHHh-CCEEE-CCCCCHHHHHHHHHHHH
Confidence            478888875 677777876643111     22233333211   122334 79999 76  6888888887554

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=96.13  E-value=0.0018  Score=65.13  Aligned_cols=64  Identities=25%  Similarity=0.349  Sum_probs=37.4

Q ss_pred             CCCCCCccccCC------CCccCCCChhhhhh----hcccccCCCCCcccc-----CCCcceEEeCCCCCCchhHHHHHH
Q psy6613         372 DDNESIGNSRAG------KNTLTTPTTKEKKK----IFFKKQETTTPYDVV-----PSMRPVVLVGPSLKGYEVTDMMQK  436 (510)
Q Consensus       372 ~~~~~~~~~~~~------~~~~~~~~~~~~~~----~~~~~~~~~~~y~~~-----p~~rp~~~~gp~~~~~~~~~~m~~  436 (510)
                      |++||.|+...+      .+.++++...+++.    ...+..+++.+|+.|     +..|||||+||+ ||.-+..||++
T Consensus        42 d~~wWqA~~v~~~~~~~~~GlIPS~~~~e~~~~~~~~~~~~~~~~~~YE~V~~~~~~~~RpvVl~Gp~-K~tl~~~Ll~~  120 (292)
T 3tvt_A           42 DDEWWQARRVLGDNEDEQIGIVPSKRRWERKMRARDRSVKSEENVLSYEAVQRLSINYTRPVIILGPL-KDRINDDLISE  120 (292)
T ss_dssp             SSSEEEECCCCC--------EEECHHHHHHHHHC----------CCCEEEEEEEECSSCCCEEEESTT-HHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCccceeEEeChHHHHHHHHHhhccccccccccchheEEeccCCCCCeEEEeCCC-HHHHHHHHHHh
Confidence            678998875322      23344443333221    123567789999999     889999999998 77766666554

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.09  E-value=0.03  Score=53.53  Aligned_cols=17  Identities=6%  Similarity=-0.050  Sum_probs=15.9

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      .|++|+||||+.+.|.+
T Consensus        28 ~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           28 SGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            89999999999998876

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.94  E-value=0.03  Score=52.04  Aligned_cols=92  Identities=15%  Similarity=0.083  Sum_probs=49.1

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh------hhhhhc------------ccHHHHHHHHH----cCCeEEE
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS------VLTEVQ------------TEIERVYELAS----TLQLVVL  207 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p------Fe~~I~------------TslesI~~vi~----sGKi~IL  207 (510)
                      +|++|+||||+.+.|.+ ..-.+ +......|..      .-..+.            .....+.+.+.    .|..+|+
T Consensus        10 ~G~~GsGKsT~a~~La~~l~~~~-i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~i~   88 (220)
T 1aky_A           10 IGPPGAGKGTQAPNLQERFHAAH-LATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGFIL   88 (220)
T ss_dssp             ECCTTSSHHHHHHHHHHHHCCEE-EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGGSCEEE
T ss_pred             ECCCCCCHHHHHHHHHHHcCceE-EehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhccccCCCeEE
Confidence            89999999999999877 32111 1111111211      000000            11233444444    5778999


Q ss_pred             EeccCCchh--H----hhhc-CCCc-eEEEEeCCCHHHHHHHHHhc
Q psy6613         208 DCDTINHPS--Q----LAKT-NLSP-CIVYLKISSPKVLQRLIKSR  245 (510)
Q Consensus       208 DID~qg~~l--q----~lks-~l~P-ivIFIkPPS~e~L~~rLr~R  245 (510)
                      |--+.+ ..  +    .+.. ...| ++||+..| .+++.+|+..|
T Consensus        89 dg~~~~-~~~~~~l~~~l~~~~~~~d~vi~L~~~-~e~~~~R~~~r  132 (220)
T 1aky_A           89 DGFPRT-IPQAEKLDQMLKEQGTPLEKAIELKVD-DELLVARITGR  132 (220)
T ss_dssp             ESCCCS-HHHHHHHHHHHHHHTCCCCEEEEEECC-HHHHHHHHHTE
T ss_pred             eCCCCC-HHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhCC
Confidence            954433 11  1    1222 3456 67888875 67777787665

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.88  E-value=0.11  Score=48.87  Aligned_cols=17  Identities=12%  Similarity=-0.009  Sum_probs=16.0

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|+||||+.+.|.+
T Consensus        22 ~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           22 LGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            89999999999999886

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.88  E-value=0.031  Score=54.62  Aligned_cols=138  Identities=10%  Similarity=0.014  Sum_probs=68.6

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceee---ecCCC-chh----hhh---hhc--ccHHHHHHHHHcCCeEEEEeccCCch-
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIM---ERSNS-RSS----VLT---EVQ--TEIERVYELASTLQLVVLDCDTINHP-  215 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~s---VshTT-R~p----Fe~---~I~--TslesI~~vi~sGKi~ILDID~qg~~-  215 (510)
                      +|++|+||||+.+.|.. ..-.|.-.   +...+ ...    |..   .+.  ...+.+.++......+|+..- .|.+ 
T Consensus        54 ~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~~~~Via~G-gG~v~  132 (250)
T 3nwj_A           54 VGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTG-GGAVI  132 (250)
T ss_dssp             ECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCSSEEEECC-GGGGG
T ss_pred             ECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHHHHHHHHhhcCCcEEecC-CCeec
Confidence            99999999999998875 21111110   00001 001    211   111  223345566655233444322 1211 


Q ss_pred             ----hHhhhcCCCceEEEEeCCCHHHHHHHHHh-----cCCCcH-------HHHHHHH----HHHHHHHhcCCCCccEEE
Q psy6613         216 ----SQLAKTNLSPCIVYLKISSPKVLQRLIKS-----RGKSQT-------RHLNVQM----VAAEKLAQCPQEMFDVIL  275 (510)
Q Consensus       216 ----lq~lks~l~PivIFIkPPS~e~L~~rLr~-----Rgt~~~-------e~i~kRL----~aa~eLEq~~~~~FD~VI  275 (510)
                          ...++   ..++||+..| .+++.+|+..     |+....       +....++    .....+   |. .-|++|
T Consensus       133 ~~~~~~~l~---~~~vV~L~a~-~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~l---Y~-~ad~vi  204 (250)
T 3nwj_A          133 RPINWKYMH---KGISIWLDVP-LEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEA---YT-KASARV  204 (250)
T ss_dssp             SHHHHHHHT---TSEEEEEECC-HHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHH---HT-TSSEEE
T ss_pred             CHHHHHHHh---CCcEEEEECC-HHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHH---Hh-hCCEEE
Confidence                22222   3678999885 6778888764     222111       0112223    222222   32 278998


Q ss_pred             --------------eCCCHHHHHHHHHHHHHHHHHh
Q psy6613         276 --------------DENQLEDACEHIAEYLEAYWRA  297 (510)
Q Consensus       276 --------------vNDdLd~A~~eL~~ileai~~a  297 (510)
                                    .+-+.++.++++.+.++.+...
T Consensus       205 ~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~~~  240 (250)
T 3nwj_A          205 SLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEK  240 (250)
T ss_dssp             EHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHT
T ss_pred             EecccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence                          3457888999988888776644

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=95.73  E-value=0.046  Score=52.30  Aligned_cols=148  Identities=11%  Similarity=0.030  Sum_probs=79.1

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-CCCC-ceeeec-CCCchh-----h-----------------hhhhcccHHHHHHHH
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-NPSK-RAIMER-SNSRSS-----V-----------------LTEVQTEIERVYELA  199 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~-F~~sVs-hTTR~p-----F-----------------e~~I~TslesI~~vi  199 (510)
                      ++.|  .|++|+||||+.+.|.+ .... ..+.-| ..|.--     +                 .+.-.-..+.|...+
T Consensus         5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~~I~paL   84 (216)
T 3tmk_A            5 GKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKIKKDL   84 (216)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcccceEEEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4554  89999999999999988 3321 111112 111100     0                 000002345677788


Q ss_pred             HcCCeEEEEeccCCc------------hhHhhhc----CCCc-eEEEE-eCCCHHHHHHHHHhcC--CCcHHHHHHHH-H
Q psy6613         200 STLQLVVLDCDTINH------------PSQLAKT----NLSP-CIVYL-KISSPKVLQRLIKSRG--KSQTRHLNVQM-V  258 (510)
Q Consensus       200 ~sGKi~ILDID~qg~------------~lq~lks----~l~P-ivIFI-kPPS~e~L~~rLr~Rg--t~~~e~i~kRL-~  258 (510)
                      ++|++||+|=-..++            .+..++.    .+.| ++||+ ..| .++..+|+..++  -+. .+-.+|+ +
T Consensus        85 ~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~-pe~~~~R~~~~~dr~E~-~~f~~rvr~  162 (216)
T 3tmk_A           85 LEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQD-VDNNAEKSGFGDERYET-VKFQEKVKQ  162 (216)
T ss_dssp             HTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSC-CSCGGGCCSSSCCTTCC-HHHHHHHHH
T ss_pred             HcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCC-HHHHHHHhccCcccccH-HHHHHHHHH
Confidence            999999998532110            1222332    2345 56666 433 334445543222  122 4555566 3


Q ss_pred             HHHHHHhc----CCCCccEEEe--CCCHHHHHHHHHHHHHHHHHh
Q psy6613         259 AAEKLAQC----PQEMFDVILD--ENQLEDACEHIAEYLEAYWRA  297 (510)
Q Consensus       259 aa~eLEq~----~~~~FD~VIv--NDdLd~A~~eL~~ileai~~a  297 (510)
                      .=.++...    ++.. -.||.  +.++++..+++.++|+.++..
T Consensus       163 ~Y~~la~~~~~~~~~~-~~vID~a~~s~eeV~~~I~~~i~~~l~~  206 (216)
T 3tmk_A          163 TFMKLLDKEIRKGDES-ITIVDVTNKGIQEVEALIWQIVEPVLST  206 (216)
T ss_dssp             HHHHHHHHHHHTTCCS-EEEEECTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhccccCCCC-EEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence            33444432    2222 23344  478999999999888877653

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.63  E-value=0.03  Score=52.17  Aligned_cols=94  Identities=13%  Similarity=0.077  Sum_probs=48.3

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeee--------cCCCc--hh----hhhh--hc--ccHHHHHHHHHc---CCeEEEE
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIME--------RSNSR--SS----VLTE--VQ--TEIERVYELAST---LQLVVLD  208 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sV--------shTTR--~p----Fe~~--I~--TslesI~~vi~s---GKi~ILD  208 (510)
                      +|++|+||||+.+.|.+ .. ...+..        +..|.  ..    |...  +.  ...+.|...+..   |+.+|+|
T Consensus        11 ~G~~GsGKsT~a~~La~~l~-~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~~i~d   89 (217)
T 3be4_A           11 IGAPGSGKGTQCEFIKKEYG-LAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCVNGFVLD   89 (217)
T ss_dssp             EECTTSSHHHHHHHHHHHHC-CEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTTTCEEEE
T ss_pred             ECCCCCCHHHHHHHHHHHhC-ceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCCEEEe
Confidence            89999999999998876 32 111111        10000  00    1110  00  112233343433   8899999


Q ss_pred             eccCCc-hhH----hhhc-CCCc-eEEEEeCCCHHHHHHHHHhcC
Q psy6613         209 CDTINH-PSQ----LAKT-NLSP-CIVYLKISSPKVLQRLIKSRG  246 (510)
Q Consensus       209 ID~qg~-~lq----~lks-~l~P-ivIFIkPPS~e~L~~rLr~Rg  246 (510)
                      --+.+. ..+    .+.. ...| ++||+..| .+++.+|+..|+
T Consensus        90 g~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~-~e~~~~Rl~~R~  133 (217)
T 3be4_A           90 GFPRTIPQAEGLAKILSEIGDSLTSVIYFEID-DSEIIERISGRC  133 (217)
T ss_dssp             SCCCSHHHHHHHHHHHHHHTCCCCEEEEEECC-HHHHHHHHHTEE
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCC
Confidence            544330 011    1222 3455 67777775 677888887764

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.52  E-value=0.0089  Score=53.51  Aligned_cols=131  Identities=9%  Similarity=0.015  Sum_probs=64.7

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCC-ch-----h---hhh---hhc--ccHHHHHHHHHcCCeEEEEeccCCch
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNS-RS-----S---VLT---EVQ--TEIERVYELASTLQLVVLDCDTINHP  215 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTT-R~-----p---Fe~---~I~--TslesI~~vi~sGKi~ILDID~qg~~  215 (510)
                      +||+|+||||+.+.|.+ ..  +.+.-...- +.     .   |..   ...  .....+..+. ....||++..... +
T Consensus        10 ~G~~GsGKsTla~~La~~l~--~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~-~~~~~vi~~g~~~-~   85 (175)
T 1via_A           10 IGFMGSGKSTLARALAKDLD--LVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFS-SCEKACIATGGGF-V   85 (175)
T ss_dssp             ECCTTSCHHHHHHHHHHHHT--CEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHT-TCCSEEEECCTTG-G
T ss_pred             EcCCCCCHHHHHHHHHHHcC--CCEEcccHHHHHHcCCCHHHHHHHcCHHHHHHHHHHHHHHHH-ccCCEEEECCCCE-e
Confidence            99999999999998876 32  111111000 00     0   110   000  1122233333 4456777753211 1


Q ss_pred             hH-hhhcCCCceEEEEeCCCHHHHHHHHHhcC-----CCc-HHHHHHHHHHHHHHHhcCCCCccEEEeCC--CHHHHHHH
Q psy6613         216 SQ-LAKTNLSPCIVYLKISSPKVLQRLIKSRG-----KSQ-TRHLNVQMVAAEKLAQCPQEMFDVILDEN--QLEDACEH  286 (510)
Q Consensus       216 lq-~lks~l~PivIFIkPPS~e~L~~rLr~Rg-----t~~-~e~i~kRL~aa~eLEq~~~~~FD~VIvND--dLd~A~~e  286 (510)
                      .. .++.  ..++||+.. +.+++.+|+..|.     ... .+.+...+.....+   |....|++|.++  ++++++++
T Consensus        86 ~~~~l~~--~~~~i~l~~-~~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~r~~~---y~~~~~~~Idt~~~~~eev~~~  159 (175)
T 1via_A           86 NVSNLEK--AGFCIYLKA-DFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSK---YEQKANFILNIENKNIDELLSE  159 (175)
T ss_dssp             GSTTGGG--GCEEEEEEC-CHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHH---HHHHCSEEEECTTCCHHHHHHH
T ss_pred             hhhHHhc--CCEEEEEeC-CHHHHHHHHhcccCCCCCCcccHHHHHHHHHHHHHH---HHhcCCEEEECCCCCHHHHHHH
Confidence            11 0221  247888886 5788888876552     111 12222222222222   223468999776  68888888


Q ss_pred             HHHHH
Q psy6613         287 IAEYL  291 (510)
Q Consensus       287 L~~il  291 (510)
                      +.+++
T Consensus       160 I~~~l  164 (175)
T 1via_A          160 IKKVI  164 (175)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87444

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.36  E-value=0.018  Score=53.39  Aligned_cols=133  Identities=14%  Similarity=0.139  Sum_probs=65.7

Q ss_pred             EecCcCChHHHHHHHhc-CC-C-C--ceeeecCCCchh------hh-hh----hcccHHHHHHHHHcCCeEEEEeccCCc
Q psy6613         151 ITRVTADISLAKRSLMS-NP-S-K--RAIMERSNSRSS------VL-TE----VQTEIERVYELASTLQLVVLDCDTINH  214 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P-~-~--F~~sVshTTR~p------Fe-~~----I~TslesI~~vi~sGKi~ILDID~qg~  214 (510)
                      +|++|+||||+.+.|.. .+ . .  +.+.-...-|..      |. +.    +..-.+.+...++.|..||+|.- ...
T Consensus        31 ~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~g~~VI~d~~-~~~  109 (211)
T 1m7g_A           31 TGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIAITSFI-SPY  109 (211)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEECC-CCC
T ss_pred             ECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhccccCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEecC-Ccc
Confidence            99999999999998876 22 1 1  111100011111      10 11    00112234556789999999932 110


Q ss_pred             --hhHhhhc--C--------CCc-eEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHH-----HHHHhcCC--CCccEE
Q psy6613         215 --PSQLAKT--N--------LSP-CIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAA-----EKLAQCPQ--EMFDVI  274 (510)
Q Consensus       215 --~lq~lks--~--------l~P-ivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa-----~eLEq~~~--~~FD~V  274 (510)
                        -.+.++.  .        ..| ++||+.. +.+++.+|+ .|+      ...+....     ..+...|.  ...|++
T Consensus       110 ~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~-~~e~~~~R~-~r~------~~~~~r~~~~~~~~~~~~~y~~~~~~~~~  181 (211)
T 1m7g_A          110 RKDRDTARQLHEVATPGEETGLPFVEVYVDV-PVEVAEQRD-PKG------LYKKAREGVIKEFTGISAPYEAPANPEVH  181 (211)
T ss_dssp             HHHHHHHHHHHHCCCTTCSCCCCEEEEEEEC-CHHHHHTSC-TTC------HHHHHHHTSSSSCBTTTBCCCCCSSCSEE
T ss_pred             HHHHHHHHHHhhhcccccccCCCeEEEEEeC-CHHHHHHhh-hHH------HHHHHHhcchhhhhhhhhhccCCCCCeEE
Confidence              0222222  1        123 5677775 567777664 111      11111000     01222232  245788


Q ss_pred             EeCC--CHHHHHHHHHHHHH
Q psy6613         275 LDEN--QLEDACEHIAEYLE  292 (510)
Q Consensus       275 IvND--dLd~A~~eL~~ile  292 (510)
                      |.++  ++++.++++.++|.
T Consensus       182 IDt~~~s~eev~~~I~~~l~  201 (211)
T 1m7g_A          182 VKNYELPVQDAVKQIIDYLD  201 (211)
T ss_dssp             EECSSSCHHHHHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHHHHH
Confidence            8765  58888888886654

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.29  E-value=0.087  Score=49.18  Aligned_cols=76  Identities=13%  Similarity=0.131  Sum_probs=43.2

Q ss_pred             CCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEEEeCC-CH
Q psy6613         202 LQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDEN-QL  280 (510)
Q Consensus       202 GKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~VIvND-dL  280 (510)
                      +..||+|+..--  -.-+. .+.-.+|||..|. ++..+|+          +..++   ..+.......-|+||.|+ ++
T Consensus       111 ~~~vv~d~pll~--e~~~~-~~~d~vi~v~a~~-e~r~~Rl----------i~~q~---~~~~~~~~~~AD~vI~n~~~~  173 (192)
T 2grj_A          111 SGLIVIEAALLK--RMGLD-QLCDHVITVVASR-ETILKRN----------READR---RLKFQEDIVPQGIVVANNSTL  173 (192)
T ss_dssp             CEEEEEECTTTT--TTTGG-GGCSEEEEEECCH-HHHHHHC----------SSHHH---HHTTCTTCCCCSEEEECSSCH
T ss_pred             CCEEEEEEecee--ecChH-HhCCEEEEEECCH-HHHHHHH----------HHhcC---CchhhhHHhcCCEEEECCCCH
Confidence            678899875321  00111 2345789999874 3333333          11122   111111235679999886 58


Q ss_pred             HHHHHHHHHHHHHH
Q psy6613         281 EDACEHIAEYLEAY  294 (510)
Q Consensus       281 d~A~~eL~~ileai  294 (510)
                      ++...++.++++.+
T Consensus       174 ~~l~~~v~~~~~~l  187 (192)
T 2grj_A          174 EDLEKKVEEVMKLV  187 (192)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888777665

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=95.29  E-value=0.054  Score=48.84  Aligned_cols=139  Identities=12%  Similarity=0.063  Sum_probs=66.6

Q ss_pred             EecCcCChHHHHHHHhc-C-CCCceee-e-cCCCchh------hh-hhhcccHHH---H-HHHHHcCCeEEEEeccCCc-
Q psy6613         151 ITRVTADISLAKRSLMS-N-PSKRAIM-E-RSNSRSS------VL-TEVQTEIER---V-YELASTLQLVVLDCDTINH-  214 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~-P~~F~~s-V-shTTR~p------Fe-~~I~Tsles---I-~~vi~sGKi~ILDID~qg~-  214 (510)
                      +|++|+||||+.+.|.. . +..+... + ...-|..      |. .+....+..   + ..+...|.++|+|...-.. 
T Consensus        19 ~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~g~~vi~d~~~~~~~   98 (186)
T 2yvu_A           19 TGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRHLKRIAWIARLLARNGVIVICSFVSPYKQ   98 (186)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHTTTCEEEEECCCCCHH
T ss_pred             EcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHhCCCEEEEeCccccHH
Confidence            99999999999998876 2 2122111 1 1111111      10 000011111   1 2235789999998743210 


Q ss_pred             hhHhhh----c-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHH-HHHHHHHHHHhcCC--CCccEEEeCC--CHHHHH
Q psy6613         215 PSQLAK----T-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLN-VQMVAAEKLAQCPQ--EMFDVILDEN--QLEDAC  284 (510)
Q Consensus       215 ~lq~lk----s-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~-kRL~aa~eLEq~~~--~~FD~VIvND--dLd~A~  284 (510)
                      ....++    . ...-++||+.. +.+++.+|+..+.   .+... ..+..-.++...|.  ...|++|.++  +.++.+
T Consensus        99 ~r~~~~~~~~~~~~~~~~v~L~~-~~e~~~~R~~~~~---~~~~~~~~~~~~~~~~~~y~~~~~~~~~Id~~~~~~~ev~  174 (186)
T 2yvu_A           99 ARNMVRRIVEEEGIPFLEIYVKA-SLEEVIRRDPKGL---YKKALKGELENFTGITDPYEPPENPQLVLDTESNTIEHNV  174 (186)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEEC-CHHHHHHHCHHHH---HHHHHTTCCSSCHHHHSCCCCCSSCSEEEETTTSCHHHHH
T ss_pred             HHHHHHHHhhccCCCeEEEEEeC-CHHHHHHhhhhhh---hhHHhhcchhhhhhhhhcccCCCCCcEEEECCCCCHHHHH
Confidence            011111    1 12235677776 4777777753210   00000 00100111222332  3468888775  688888


Q ss_pred             HHHHHHHHH
Q psy6613         285 EHIAEYLEA  293 (510)
Q Consensus       285 ~eL~~ilea  293 (510)
                      +++.++|..
T Consensus       175 ~~I~~~l~~  183 (186)
T 2yvu_A          175 SYLYSLVKA  183 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888877654

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=95.24  E-value=0.0051  Score=66.65  Aligned_cols=139  Identities=12%  Similarity=0.030  Sum_probs=69.9

Q ss_pred             EecCcCChHHHHHHHhc-CCC-Cceeee-c-CCCchh------hh-hh----hcccHHHHHHHHHcCCeEEEEeccCC-c
Q psy6613         151 ITRVTADISLAKRSLMS-NPS-KRAIME-R-SNSRSS------VL-TE----VQTEIERVYELASTLQLVVLDCDTIN-H  214 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~-~F~~sV-s-hTTR~p------Fe-~~----I~TslesI~~vi~sGKi~ILDID~qg-~  214 (510)
                      +|++|+||||+.+.|.+ ... .+.+.+ . ..-|..      |. .+    +..-...+..+++.|..||+|...-- .
T Consensus       378 ~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~~l~~i~~~~~~~l~~G~~VI~d~~~~~~~  457 (546)
T 2gks_A          378 TGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNILRVGFVASEIVKHNGVVICALVSPYRS  457 (546)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCCCHH
T ss_pred             cCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCCCHH
Confidence            89999999999998876 221 111111 1 011111      10 00    01112345567889999999953211 0


Q ss_pred             hhHhhhcCC---CceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC--CCCccEEEeCC--CHHHHHHHH
Q psy6613         215 PSQLAKTNL---SPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCP--QEMFDVILDEN--QLEDACEHI  287 (510)
Q Consensus       215 ~lq~lks~l---~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~--~~~FD~VIvND--dLd~A~~eL  287 (510)
                      ..+..+..+   ..++|||.. +.+++.+|++ |+.- .+.....+..-..+...|  ....|++|.|+  +++++.+++
T Consensus       458 ~r~~~~~~l~~~d~~vV~L~~-~~e~~~~Rl~-r~~~-~~~~~~~i~~~~~vr~~~e~~~~adivIDts~~s~eev~~~I  534 (546)
T 2gks_A          458 ARNQVRNMMEEGKFIEVFVDA-PVEVCEERDV-KGLY-KKAKEGLIKGFTGVDDPYEPPVAPEVRVDTTKLTPEESALKI  534 (546)
T ss_dssp             HHHHHHTTSCTTCEEEEEEEC-CGGGHHHHCC-SSHH-HHC------CCBTTTBCCCCCSSCSEEEETTTSCHHHHHHHH
T ss_pred             HHHHHHHHhhcCCEEEEEEeC-CHHHHHHHhh-cccc-ccccHHHHHHHHhhhhccccccCCcEEEECCCCCHHHHHHHH
Confidence            011122212   237889986 6778888865 3210 000000110000011112  13468999885  699999999


Q ss_pred             HHHHH
Q psy6613         288 AEYLE  292 (510)
Q Consensus       288 ~~ile  292 (510)
                      .++|+
T Consensus       535 ~~~L~  539 (546)
T 2gks_A          535 LEFLK  539 (546)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            86664

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.16  E-value=0.073  Score=47.04  Aligned_cols=133  Identities=12%  Similarity=0.025  Sum_probs=63.0

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceee-e-----cCCCchh-hhh---hhc--ccHHHHHHHHHcCCeEEEEeccCCchhH
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIM-E-----RSNSRSS-VLT---EVQ--TEIERVYELASTLQLVVLDCDTINHPSQ  217 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~s-V-----shTTR~p-Fe~---~I~--TslesI~~vi~sGKi~ILDID~qg~~lq  217 (510)
                      .|++|+||||+.+.|-+ ..-.|.-. .     ...+-.. |..   .+.  ...+.+..++..+..+|+... .|.+..
T Consensus        13 ~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~Vi~~g-~g~~~~   91 (168)
T 1zuh_A           13 IGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTG-GGIVMH   91 (168)
T ss_dssp             ESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCEEECC-GGGGGC
T ss_pred             ECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEEEECC-CCEech
Confidence            89999999999998876 22111100 0     0000000 110   000  122335555555544155432 121111


Q ss_pred             hhhc-CCCceEEEEeCCCHHHHHHHHHhc-----CCCc-HHHHHHHHHHHHHHHhcCCCCccEEEeCC-CHHHHHHHHHH
Q psy6613         218 LAKT-NLSPCIVYLKISSPKVLQRLIKSR-----GKSQ-TRHLNVQMVAAEKLAQCPQEMFDVILDEN-QLEDACEHIAE  289 (510)
Q Consensus       218 ~lks-~l~PivIFIkPPS~e~L~~rLr~R-----gt~~-~e~i~kRL~aa~eLEq~~~~~FD~VIvND-dLd~A~~eL~~  289 (510)
                        .. .-.-.+|||..| .+++.+|+..|     +... .+.+...+......   |....|++|.|+ +++++++++.+
T Consensus        92 --~~l~~~~~vi~l~~~-~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r~~~---~~~~a~~~Id~~~~~e~~~~~I~~  165 (168)
T 1zuh_A           92 --ENLKGLGTTFYLKMD-FETLIKRLNQKEREKRPLLNNLTQAKELFEKRQAL---YEKNASFIIDARGGLNNSLKQVLQ  165 (168)
T ss_dssp             --GGGTTSEEEEEEECC-HHHHHHHHCC--------CCTTHHHHHHHHHHHHH---HHHTCSEEEEGGGCHHHHHHHHHH
T ss_pred             --hHHhcCCEEEEEECC-HHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHH---HHHHCCEEEECCCCHHHHHHHHHH
Confidence              11 112367888875 67777777655     2211 23333333222222   223469999876 58888777764


Q ss_pred             H
Q psy6613         290 Y  290 (510)
Q Consensus       290 i  290 (510)
                      +
T Consensus       166 ~  166 (168)
T 1zuh_A          166 F  166 (168)
T ss_dssp             C
T ss_pred             H
Confidence            3

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=95.12  E-value=0.18  Score=48.31  Aligned_cols=95  Identities=11%  Similarity=0.122  Sum_probs=54.5

Q ss_pred             HHHHHHHHcCCeEEEEeccCCchhHhh---hcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHH----HHHHh
Q psy6613         193 ERVYELASTLQLVVLDCDTINHPSQLA---KTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAA----EKLAQ  265 (510)
Q Consensus       193 esI~~vi~sGKi~ILDID~qg~~lq~l---ks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa----~eLEq  265 (510)
                      +.|++++++| .||++--- |  --++   +..-+.+.|||..| ++++.+|+..+..-+.++..++|..-    .....
T Consensus       107 ~~i~~la~~~-~~Vi~Grg-g--g~vl~~~~~~~~~~~VfL~A~-~e~r~~Ri~~~~~~~~~~a~~~I~~~d~~R~~~Y~  181 (223)
T 3hdt_A          107 EVMRELAESE-PCIFVGRA-A--GYVLDQDEDIERLIRIFVYTD-KVKKVQRVMEVDCIDEERAKRRIKKIEKERKEYYK  181 (223)
T ss_dssp             HHHHHHHHHS-CEEEESTT-H--HHHHHHCTTCCEEEEEEEECC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCC-CEEEEeCC-c--chhcccccCCCCeEEEEEECC-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4566777666 57776332 2  2344   32324688999995 67777676543223334444444111    11111


Q ss_pred             c-------CCCCccEEEeCC--CHHHHHHHHHHHHH
Q psy6613         266 C-------PQEMFDVILDEN--QLEDACEHIAEYLE  292 (510)
Q Consensus       266 ~-------~~~~FD~VIvND--dLd~A~~eL~~ile  292 (510)
                      .       .+..||++|..+  +++++++.+.++++
T Consensus       182 ~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~  217 (223)
T 3hdt_A          182 YFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYIR  217 (223)
T ss_dssp             HHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHH
T ss_pred             HHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHH
Confidence            1       124689999876  58889888886665

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=95.11  E-value=0.0095  Score=66.41  Aligned_cols=44  Identities=25%  Similarity=0.632  Sum_probs=34.3

Q ss_pred             ccCCCCCccccCCC-----cceEEeCCCCCCchhHHHHHHHHHHHHhhhcCCcEE
Q psy6613         402 KQETTTPYDVVPSM-----RPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRII  451 (510)
Q Consensus       402 ~~~~~~~y~~~p~~-----rp~~~~gp~~~~~~~~~~m~~al~~~l~~~f~~~i~  451 (510)
                      ..+..+||+.|+.|     |||||+||+ |     +-+.++|++.+.++|..-|.
T Consensus       513 ~~~~~~~Ye~V~~~~~~~~r~vvl~GP~-K-----~tl~~~L~~~~~~~~~~~vs  561 (721)
T 2xkx_A          513 REDSVLSYETVTQMEVHYARPIIILGPT-K-----DRANDDLLSEFPDKFGSCVP  561 (721)
T ss_pred             ccccCCCceeeecccCCCCCEEEEECCC-H-----HHHHHHHHHhCccceeeccc
Confidence            46788999999988     999999997 4     34667788877777766543

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=94.82  E-value=0.099  Score=47.92  Aligned_cols=138  Identities=13%  Similarity=0.078  Sum_probs=66.3

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-C--CCCce-eeecCCCchh------h-hhhhc----ccHHHHHHHHHcCCeEEEEe
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-N--PSKRA-IMERSNSRSS------V-LTEVQ----TEIERVYELASTLQLVVLDC  209 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~--P~~F~-~sVshTTR~p------F-e~~I~----TslesI~~vi~sGKi~ILDI  209 (510)
                      +.+|  +||+|+||||+.+.|.. .  +.... +.-...-|..      | .+...    .-.+........|..+|.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~  104 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICIASL  104 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCcChHHHHHHHHHHHHHHHHHHhCCceEEEec
Confidence            4454  89999999999998876 2  22211 1111100110      0 00100    11122334456788888665


Q ss_pred             ccCC-chhHhhhcCC---CceEEEEeCCCHHHHHHHH------HhcCCCcHHHHHHHHHHHHHHHhcC--CCCccEEEeC
Q psy6613         210 DTIN-HPSQLAKTNL---SPCIVYLKISSPKVLQRLI------KSRGKSQTRHLNVQMVAAEKLAQCP--QEMFDVILDE  277 (510)
Q Consensus       210 D~qg-~~lq~lks~l---~PivIFIkPPS~e~L~~rL------r~Rgt~~~e~i~kRL~aa~eLEq~~--~~~FD~VIvN  277 (510)
                      -... .....++..+   ..++||+.. +.+++.+|+      +.|......        ...+...|  +..-|++|..
T Consensus       105 ~~~~~~~r~~~~~~~~~~~~~~v~L~a-~~e~~~~R~~~~l~~~~r~~~~~~--------~~~~~~~~~~~~~~~~~idt  175 (200)
T 3uie_A          105 ISPYRTDRDACRSLLPEGDFVEVFMDV-PLSVCEARDPKGLYKLARAGKIKG--------FTGIDDPYEPPLNCEISLGR  175 (200)
T ss_dssp             CCCCHHHHHHHHHTSCTTSEEEEEECC-CHHHHHHHCTTSHHHHHHTTSSCS--------CBTTTBCCCCCSSCSEEECC
T ss_pred             CCchHHHHHHHHHhcCCCCEEEEEEeC-CHHHHHHhcccchHHHHhcCCCCC--------CCCCCCcCcCCCCCCEEEec
Confidence            3321 0122233322   234577776 578887775      211111000        00112222  1235678864


Q ss_pred             C---CHHHHHHHHHHHHHH
Q psy6613         278 N---QLEDACEHIAEYLEA  293 (510)
Q Consensus       278 D---dLd~A~~eL~~ilea  293 (510)
                      +   +++++++++.++|..
T Consensus       176 ~~~~~~~e~v~~i~~~l~~  194 (200)
T 3uie_A          176 EGGTSPIEMAEKVVGYLDN  194 (200)
T ss_dssp             SSCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            3   788888888866643

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=94.80  E-value=0.047  Score=56.03  Aligned_cols=57  Identities=0%  Similarity=-0.086  Sum_probs=39.2

Q ss_pred             EecCcCChHHHHHHHhc-CC------CCc--eeeecCCCchh-hhh----------------hhc------ccHHHHHHH
Q psy6613         151 ITRVTADISLAKRSLMS-NP------SKR--AIMERSNSRSS-VLT----------------EVQ------TEIERVYEL  198 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P------~~F--~~sVshTTR~p-Fe~----------------~I~------TslesI~~v  198 (510)
                      +||+|+|||||..+|.. .+      +.|  ....+.+|++| .++                .+.      .....+.++
T Consensus        13 ~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~~~i~~i   92 (340)
T 3d3q_A           13 VGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAEKYIKDI   92 (340)
T ss_dssp             ECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHHHHHHHH
T ss_pred             ECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHH
Confidence            89999999999999887 44      122  33456677766 111                000      355677788


Q ss_pred             HHcCCeEEE
Q psy6613         199 ASTLQLVVL  207 (510)
Q Consensus       199 i~sGKi~IL  207 (510)
                      ...|+.+|+
T Consensus        93 ~~~g~~~Il  101 (340)
T 3d3q_A           93 TRRGKVPII  101 (340)
T ss_dssp             HHTTCEEEE
T ss_pred             HhCCCcEEE
Confidence            889999998

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=94.53  E-value=0.036  Score=56.49  Aligned_cols=59  Identities=7%  Similarity=-0.005  Sum_probs=41.1

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceee--------ecCCCchhhhhh----------------------hc-ccHHHHHHH
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIM--------ERSNSRSSVLTE----------------------VQ-TEIERVYEL  198 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~s--------VshTTR~pFe~~----------------------I~-TslesI~~v  198 (510)
                      +||+|+|||||...|.+ .+..+..+        .+.+|++|-.++                      +. ...+.|.++
T Consensus        11 ~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a~~~i~~i   90 (323)
T 3crm_A           11 MGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADALAAMAKA   90 (323)
T ss_dssp             ECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHHHHHHHHH
Confidence            99999999999999987 44222221        366788771111                      00 456778889


Q ss_pred             HHcCCeEEEEe
Q psy6613         199 ASTLQLVVLDC  209 (510)
Q Consensus       199 i~sGKi~ILDI  209 (510)
                      ...|+++|+--
T Consensus        91 ~~~g~~~IlvG  101 (323)
T 3crm_A           91 TARGRIPLLVG  101 (323)
T ss_dssp             HHTTCEEEEEE
T ss_pred             HHcCCeEEEEC
Confidence            99999999965

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=94.29  E-value=0.017  Score=57.79  Aligned_cols=44  Identities=23%  Similarity=0.609  Sum_probs=35.1

Q ss_pred             ccCCCCCccccCCC-----cceEEeCCCCCCchhHHHHHHHHHHHHhhhcCCcEE
Q psy6613         402 KQETTTPYDVVPSM-----RPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRII  451 (510)
Q Consensus       402 ~~~~~~~y~~~p~~-----rp~~~~gp~~~~~~~~~~m~~al~~~l~~~f~~~i~  451 (510)
                      ..+..+||+.|+.|     |||||+||+      -|.+.++|++.+..+|.--|.
T Consensus        87 ~~~~~~~Ye~V~~~~~~~~r~ivl~GPg------K~tl~~~L~~~~~~~~~~~vs  135 (295)
T 1kjw_A           87 REDSVLSYETVTQMEVHYARPIIILGPT------KDRANDDLLSEFPDKFGSCVP  135 (295)
T ss_dssp             CCCCCCCEEEEEEEECCSCCCEEEESTT------HHHHHHHHHHHCTTTEECCCC
T ss_pred             ccCCCCCcceeeeecCCCCCEEEEECCC------HHHHHHHHHhhCccceeeeee
Confidence            46688999999987     999999993      577888888877667765443

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=94.28  E-value=0.078  Score=47.43  Aligned_cols=64  Identities=11%  Similarity=0.133  Sum_probs=33.3

Q ss_pred             eEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC--CCCccEEEeCC--CHHHHHHHHHHHHH
Q psy6613         226 CIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCP--QEMFDVILDEN--QLEDACEHIAEYLE  292 (510)
Q Consensus       226 ivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~--~~~FD~VIvND--dLd~A~~eL~~ile  292 (510)
                      ++||+.. +.+++.+|+..+.  ..+....++.....+...|  ....|++|.|+  ++++..+++.++++
T Consensus       107 ~~i~l~~-~~e~~~~R~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ad~vid~~~~~~~~~~~~i~~~l~  174 (179)
T 2pez_A          107 FEVFVDA-PLHVCEQRDVKGL--YKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQ  174 (179)
T ss_dssp             EEEEEEC-CHHHHHHHCTTSH--HHHHHTTSSCSCBTTTBCCCCCSSCSEEEETTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEeC-CHHHHHHHHhhhh--HHHHhcccccccccCCccccCCCCCcEEEECCCCCHHHHHHHHHHHHH
Confidence            5677776 4777777764321  0000000111001111111  24578999886  58888888885553

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=94.26  E-value=1  Score=42.52  Aligned_cols=92  Identities=14%  Similarity=0.178  Sum_probs=47.8

Q ss_pred             CCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhc---CCCcHHHHHHHHHH-HH-HHH---hcCCCCccE
Q psy6613         202 LQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSR---GKSQTRHLNVQMVA-AE-KLA---QCPQEMFDV  273 (510)
Q Consensus       202 GKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~R---gt~~~e~i~kRL~a-a~-eLE---q~~~~~FD~  273 (510)
                      -+++|||.-.-. ....+. .+.-..|||..+....+.+++...   |. +.+++..++.. .+ ..+   .-....-|+
T Consensus       134 ~~~lilDg~~~~-~~~~l~-~~~~~~i~v~th~~~~~~r~~~r~~~~G~-~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~  210 (245)
T 2jeo_A          134 ADVVLFEGILVF-YSQEIR-DMFHLRLFVDTDSDVRLSRRVLRDVRRGR-DLEQILTQYTTFVKPAFEEFCLPTKKYADV  210 (245)
T ss_dssp             CSEEEEECTTTT-TSHHHH-TTCSEEEEEECCHHHHHHHHHHHHTC----CHHHHHHHHHHTHHHHHHHHTGGGGGGCSE
T ss_pred             CCEEEEeCcccc-ccHHHH-HhcCeEEEEECCHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhhhHhHHHhCCcchhcceE
Confidence            347778732111 011122 234577888888766676665543   54 34555555521 11 111   111256799


Q ss_pred             EEeC--CCHHHHHHHHHHHHHHHHHh
Q psy6613         274 ILDE--NQLEDACEHIAEYLEAYWRA  297 (510)
Q Consensus       274 VIvN--DdLd~A~~eL~~ileai~~a  297 (510)
                      ||.+  |+ +.++++|.+.+..++..
T Consensus       211 vi~~~~dn-~~~~~~l~~~i~~~~~~  235 (245)
T 2jeo_A          211 IIPRGVDN-MVAINLIVQHIQDILNG  235 (245)
T ss_dssp             EEESSTTC-HHHHHHHHHHHHHHHHT
T ss_pred             EEcCCCCc-cHHHHHHHHHHHHHHhc
Confidence            9943  34 66777777766677653

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=94.23  E-value=0.12  Score=46.47  Aligned_cols=133  Identities=16%  Similarity=0.093  Sum_probs=63.5

Q ss_pred             EecCcCChHHHHHHHhc-CCC----CceeeecCC-Cchhhhhhhc-ccHHHHHHHHHcCCeEEEEeccCCchhH-----h
Q psy6613         151 ITRVTADISLAKRSLMS-NPS----KRAIMERSN-SRSSVLTEVQ-TEIERVYELASTLQLVVLDCDTINHPSQ-----L  218 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~----~F~~sVshT-TR~pFe~~I~-TslesI~~vi~sGKi~ILDID~qg~~lq-----~  218 (510)
                      +||+|+||||+.+.++. ..-    .+.-.+.-+ ....+..... .-..........|...++|--......+     +
T Consensus        15 ~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~i   94 (171)
T 4gp7_A           15 IGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDATNVQESARKPLIEM   94 (171)
T ss_dssp             ECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHH
Confidence            99999999999995432 100    000000000 0000111111 1122344556788888888654331111     1


Q ss_pred             hhc-CCCceEEEEeCCCHHHHHHHHHhcCC-CcHHHHHHHH-HHHHH-HHhcCCCCccEEEeCCCHHHHH
Q psy6613         219 AKT-NLSPCIVYLKISSPKVLQRLIKSRGK-SQTRHLNVQM-VAAEK-LAQCPQEMFDVILDENQLEDAC  284 (510)
Q Consensus       219 lks-~l~PivIFIkPPS~e~L~~rLr~Rgt-~~~e~i~kRL-~aa~e-LEq~~~~~FD~VIvNDdLd~A~  284 (510)
                      .+. ...|.++++--| ...|-.+.+.|.. .-.++...++ ..-.+ |.......+..|++.+|++.+.
T Consensus        95 Aral~~~p~~lllDEP-t~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~  163 (171)
T 4gp7_A           95 AKDYHCFPVAVVFNLP-EKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVE  163 (171)
T ss_dssp             HHHTTCEEEEEEECCC-HHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHH
T ss_pred             HHHcCCcEEEEEEeCC-HHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhh
Confidence            122 346777777766 4556666555532 1122222222 11111 1111113689999999998763

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=93.71  E-value=0.067  Score=50.43  Aligned_cols=69  Identities=20%  Similarity=0.309  Sum_probs=27.8

Q ss_pred             eEEEEeCCCHHHHHHHHHhcCCCcH----HHHHHHH-HHHHHHHhcC--CCCcc-EEEeCC-CHHHHHHHHHHHHHHHH
Q psy6613         226 CIVYLKISSPKVLQRLIKSRGKSQT----RHLNVQM-VAAEKLAQCP--QEMFD-VILDEN-QLEDACEHIAEYLEAYW  295 (510)
Q Consensus       226 ivIFIkPPS~e~L~~rLr~Rgt~~~----e~i~kRL-~aa~eLEq~~--~~~FD-~VIvND-dLd~A~~eL~~ileai~  295 (510)
                      .+||+..| .+++.+|+..||...+    .+..+++ ..-.++...|  ...-+ ++|.++ ++++.++++.++++.++
T Consensus       149 ~vi~Ld~~-~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~~~~  226 (230)
T 2vp4_A          149 LIIYLRTS-PEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSESSIF  226 (230)
T ss_dssp             EEEEEECC-HHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC-----------------
T ss_pred             EEEEEeCC-HHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCHHHHHHHHHHHHHHHh
Confidence            57777775 6777777777664322    1456667 3334443322  22234 555544 68888888876665443

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=93.35  E-value=0.13  Score=50.06  Aligned_cols=94  Identities=11%  Similarity=0.005  Sum_probs=50.7

Q ss_pred             EEecCcCChHHHHHHHhcCCCCceeeecCCCch------hhhhhhc------------ccHHHHHHHHHc---CCeEEEE
Q psy6613         150 IITRVTADISLAKRSLMSNPSKRAIMERSNSRS------SVLTEVQ------------TEIERVYELAST---LQLVVLD  208 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~------pFe~~I~------------TslesI~~vi~s---GKi~ILD  208 (510)
                      |+||+|+||+|+.++|.+....-.++...--|.      +.-..+.            .-.+-|.+.+.+   ++-.|||
T Consensus        13 ~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~g~ILD   92 (230)
T 3gmt_A           13 LLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANGYLFD   92 (230)
T ss_dssp             EECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTTCEEEE
T ss_pred             eECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCCCeEec
Confidence            399999999999999887111111111100121      1000110            122334444443   4568999


Q ss_pred             eccCCchhHh---hhc-CCCc-eEEEEeCCCHHHHHHHHHhcC
Q psy6613         209 CDTINHPSQL---AKT-NLSP-CIVYLKISSPKVLQRLIKSRG  246 (510)
Q Consensus       209 ID~qg~~lq~---lks-~l~P-ivIFIkPPS~e~L~~rLr~Rg  246 (510)
                      --|..  ...   +.. ...| .+||+..| .+++.+|+.+|+
T Consensus        93 GfPRt--~~Qa~~L~~~~~~~d~VI~Ldvp-~e~l~~Rl~~R~  132 (230)
T 3gmt_A           93 GFPRT--IAQADAMKEAGVAIDYVLEIDVP-FSEIIERMSGRR  132 (230)
T ss_dssp             SCCCS--HHHHHHHHHTTCCCSEEEEECCC-HHHHHHHHHTEE
T ss_pred             CCCCc--HHHHHHHHHhCCCccEEEEEeCC-HHHHHHHHHcCC
Confidence            87765  322   333 3333 67888776 577888887764

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=93.32  E-value=0.21  Score=53.67  Aligned_cols=45  Identities=16%  Similarity=0.177  Sum_probs=31.1

Q ss_pred             HcCCeEEEEeccCCchhHhh-------hc-CCCceEEEEeCCCHHHHHHHHHhcC
Q psy6613         200 STLQLVVLDCDTINHPSQLA-------KT-NLSPCIVYLKISSPKVLQRLIKSRG  246 (510)
Q Consensus       200 ~sGKi~ILDID~qg~~lq~l-------ks-~l~PivIFIkPPS~e~L~~rLr~Rg  246 (510)
                      ..|..+|+|.-.-+  ....       +. .+..++|++..++.+.+++|++.|.
T Consensus       117 ~~g~~VIvDat~~~--~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~  169 (520)
T 2axn_A          117 EGGQIAVFDATNTT--RERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVK  169 (520)
T ss_dssp             SCCCEEEEESCCCS--HHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHT
T ss_pred             cCCceEEecCCCCC--HHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhh
Confidence            57999999997655  2221       11 3335567777788999999996554

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=93.01  E-value=0.19  Score=48.15  Aligned_cols=70  Identities=21%  Similarity=0.309  Sum_probs=39.0

Q ss_pred             eEEEEeCCCHHHHHHHHHhcCCCc----HHHHHHHH-HHHHHHHh------cC---CCCccEEEe-CCCHHHHHHHHHHH
Q psy6613         226 CIVYLKISSPKVLQRLIKSRGKSQ----TRHLNVQM-VAAEKLAQ------CP---QEMFDVILD-ENQLEDACEHIAEY  290 (510)
Q Consensus       226 ivIFIkPPS~e~L~~rLr~Rgt~~----~e~i~kRL-~aa~eLEq------~~---~~~FD~VIv-NDdLd~A~~eL~~i  290 (510)
                      ++||+..| .+++.+|+..||...    ..+...++ ..-++...      .|   ...-.++|. +.++++.++++.++
T Consensus       177 ~vi~L~~~-~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~Id~~~~~eev~~~I~~~  255 (263)
T 1p5z_B          177 GIIYLQAT-PETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEK  255 (263)
T ss_dssp             EEEEEECC-HHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHHHHHHH
T ss_pred             eEEEEECC-HHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEEECCCCHHHHHHHHHHH
Confidence            57777775 788888887776421    23444555 22222211      11   011134443 35689888888877


Q ss_pred             HHHHHH
Q psy6613         291 LEAYWR  296 (510)
Q Consensus       291 leai~~  296 (510)
                      |...+.
T Consensus       256 l~~~l~  261 (263)
T 1p5z_B          256 VKEFLS  261 (263)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            766543

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=92.81  E-value=0.21  Score=55.25  Aligned_cols=142  Identities=12%  Similarity=0.092  Sum_probs=68.5

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-C---CCCceeeecCCCchh------hh-----hhhcccHHHHHHHHHcCCeEEEEe
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-N---PSKRAIMERSNSRSS------VL-----TEVQTEIERVYELASTLQLVVLDC  209 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~---P~~F~~sVshTTR~p------Fe-----~~I~TslesI~~vi~sGKi~ILDI  209 (510)
                      +++|  +|++|+||||+.+.|-+ .   --.|...-....|..      |.     +.+..-.+.++..++.|.+||.|.
T Consensus        52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r~i~eva~~~l~~G~iVI~d~  131 (630)
T 1x6v_B           52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSF  131 (630)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence            4444  89999999999998765 2   111221111111111      11     011111122344567899999873


Q ss_pred             c-cC-C---chhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHH-HHHHHHHHHHhcCC--CCccEEEeCC--
Q psy6613         210 D-TI-N---HPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLN-VQMVAAEKLAQCPQ--EMFDVILDEN--  278 (510)
Q Consensus       210 D-~q-g---~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~-kRL~aa~eLEq~~~--~~FD~VIvND--  278 (510)
                      - +- .   ...++++. ...-++||+.. +.+++.+|+.++.   -+... ..+..-..+...|.  ...|++|.++  
T Consensus       132 ~s~~~~~r~~~r~ll~~~g~p~~vV~Lda-p~Evl~~Rl~r~l---y~~aR~~~~~~~~~~~~~Ye~p~~~dlvIDts~~  207 (630)
T 1x6v_B          132 ISPYTQDRNNARQIHEGASLPFFEVFVDA-PLHVCEQRDVKGL---YKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSC  207 (630)
T ss_dssp             CCCCHHHHHHHHHHHHTTTCCEEEEEEEC-CHHHHHHHCTTSH---HHHHTTC----CBTTTBCCCCCSSCSEEEETTSS
T ss_pred             chhhHHHHHHHHHHHHhCCCCeEEEEEEC-CHHHHHHHhcccc---chhhhhhhHHHHHHhhhhhcccCCCcEEEECCCC
Confidence            1 10 0   00111122 22345777776 5788888864210   00000 00000011223332  4568888775  


Q ss_pred             CHHHHHHHHHHHHH
Q psy6613         279 QLEDACEHIAEYLE  292 (510)
Q Consensus       279 dLd~A~~eL~~ile  292 (510)
                      +++++++++.++|.
T Consensus       208 s~eevv~~Il~~L~  221 (630)
T 1x6v_B          208 DVNDCVQQVVELLQ  221 (630)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            68888888886654

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=92.56  E-value=0.64  Score=44.96  Aligned_cols=92  Identities=14%  Similarity=0.195  Sum_probs=49.0

Q ss_pred             HHHHcCCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHh----cCCCcHHHHHHHHHHHHHHHh--c--CC
Q psy6613         197 ELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKS----RGKSQTRHLNVQMVAAEKLAQ--C--PQ  268 (510)
Q Consensus       197 ~vi~sGKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~----Rgt~~~e~i~kRL~aa~eLEq--~--~~  268 (510)
                      ++++++..||+|---.|  .-++..  ..+-|||..|--...++|.+.    +...+.+++...|..-.+...  .  .-
T Consensus       123 ~~a~~~~~~V~~GRd~g--t~V~pd--a~lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl  198 (233)
T 3r20_A          123 KLATEGGRVVVEGRDIG--TVVLPD--ADVKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPL  198 (233)
T ss_dssp             HHHTSSSCEEEEESSCC--CCCCTT--CSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCC
T ss_pred             HHHHhcCcEEEecccce--eEEcCC--CCEEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccccc
Confidence            34444267888665444  112221  458899999866666665541    223345666666633333221  1  12


Q ss_pred             CCcc--EEEeCC--CHHHHHHHHHHHHH
Q psy6613         269 EMFD--VILDEN--QLEDACEHIAEYLE  292 (510)
Q Consensus       269 ~~FD--~VIvND--dLd~A~~eL~~ile  292 (510)
                      ..+|  ++|.+.  +++++++.+.++++
T Consensus       199 ~~~~dal~IDTs~l~iee~v~~I~~~i~  226 (233)
T 3r20_A          199 RAADDALVVDTSDMDQAQVIAHLLDLVT  226 (233)
T ss_dssp             SCCTTSEEEECTTSCHHHHHHHHHHHC-
T ss_pred             ccccCcEEEECCCCCHHHHHHHHHHHHH
Confidence            3455  677654  46777777775543

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=91.02  E-value=0.3  Score=51.35  Aligned_cols=24  Identities=0%  Similarity=-0.094  Sum_probs=18.8

Q ss_pred             EEecCcCChHHHHHHHhc-CCCCce
Q psy6613         150 IITRVTADISLAKRSLMS-NPSKRA  173 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~-~P~~F~  173 (510)
                      |.||+|+||||+.+.|.+ ....|.
T Consensus        55 L~GppGtGKTtlAr~ia~~~~~~f~   79 (447)
T 3pvs_A           55 LWGPPGTGKTTLAEVIARYANADVE   79 (447)
T ss_dssp             EECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             EECCCCCcHHHHHHHHHHHhCCCeE
Confidence            389999999999998887 433343

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=90.74  E-value=0.83  Score=44.73  Aligned_cols=25  Identities=0%  Similarity=-0.134  Sum_probs=19.3

Q ss_pred             eEEecCcCChHHHHHHHhc-CCCCce
Q psy6613         149 IIITRVTADISLAKRSLMS-NPSKRA  173 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~-~P~~F~  173 (510)
                      +|.||+|+|||++.+.+.. ....|.
T Consensus        59 ll~G~~GtGKT~la~~ia~~~~~~~~   84 (338)
T 3pfi_A           59 LFSGPAGLGKTTLANIISYEMSANIK   84 (338)
T ss_dssp             EEECSTTSSHHHHHHHHHHHTTCCEE
T ss_pred             EEECcCCCCHHHHHHHHHHHhCCCeE
Confidence            3499999999999999887 433343

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=89.92  E-value=0.26  Score=43.36  Aligned_cols=36  Identities=17%  Similarity=0.147  Sum_probs=24.1

Q ss_pred             CCeE-EecCcCChHHHHHHHhcCCCCceeeecCCCch
Q psy6613         147 GMII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRS  182 (510)
Q Consensus       147 ~RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~  182 (510)
                      .+++ +|++|||||||.++|+..........+.+|+.
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~   60 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRS   60 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccC
Confidence            4565 99999999999999998221222233445554

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=89.85  E-value=0.21  Score=44.32  Aligned_cols=32  Identities=16%  Similarity=0.023  Sum_probs=23.1

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS  183 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p  183 (510)
                      +|++|||||||.++|.. .. .+....+.||+..
T Consensus        10 vG~~g~GKStLl~~l~~~~~-~~~~~~~~~t~~~   42 (172)
T 2gj8_A           10 AGRPNAGKSSLLNALAGREA-AIVTDIAGTTRDV   42 (172)
T ss_dssp             EESTTSSHHHHHHHHHTSCC-SCCCSSTTCCCSC
T ss_pred             ECCCCCCHHHHHHHHhCCCc-ceeeCCCCceece
Confidence            99999999999999987 32 1223345666654

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=89.70  E-value=0.29  Score=46.71  Aligned_cols=19  Identities=5%  Similarity=0.158  Sum_probs=17.0

Q ss_pred             eEEecCcCChHHHHHHHhc
Q psy6613         149 IIITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~  167 (510)
                      +|.||+|+|||++.+.|..
T Consensus        55 ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           55 LLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             EEESSSSSSHHHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHHH
Confidence            3499999999999999887

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=89.41  E-value=0.18  Score=42.99  Aligned_cols=35  Identities=14%  Similarity=0.088  Sum_probs=19.0

Q ss_pred             CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCch
Q psy6613         148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRS  182 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~  182 (510)
                      +++ +|++|+|||||.++|+.....+....+.||+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~   38 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRD   38 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCCC-----------C
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceec
Confidence            444 99999999999999998221222333444443

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=89.00  E-value=0.19  Score=46.30  Aligned_cols=21  Identities=10%  Similarity=0.026  Sum_probs=17.9

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      +.+|  +||+|+|||||.+.|..
T Consensus        22 g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           22 RQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            4455  99999999999998876

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=87.69  E-value=0.61  Score=43.59  Aligned_cols=18  Identities=6%  Similarity=0.178  Sum_probs=16.4

Q ss_pred             EEecCcCChHHHHHHHhc
Q psy6613         150 IITRVTADISLAKRSLMS  167 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~  167 (510)
                      |.||+|+|||++.+.|..
T Consensus        44 l~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           44 LLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             EESCTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            399999999999998877

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=87.56  E-value=0.26  Score=43.31  Aligned_cols=62  Identities=18%  Similarity=0.218  Sum_probs=30.9

Q ss_pred             eEEEEeCCCHHHHHHHHHhcCC-------Cc-HHHHHHHHHHHHHHHhcCCCCccEEEeCC--CHHHHHHHHHHHH
Q psy6613         226 CIVYLKISSPKVLQRLIKSRGK-------SQ-TRHLNVQMVAAEKLAQCPQEMFDVILDEN--QLEDACEHIAEYL  291 (510)
Q Consensus       226 ivIFIkPPS~e~L~~rLr~Rgt-------~~-~e~i~kRL~aa~eLEq~~~~~FD~VIvND--dLd~A~~eL~~il  291 (510)
                      ++||+..| .+++.+|+..|+.       +. .+.+...+.....+..   ..-|++|.|+  ++++.++++..++
T Consensus        99 ~~i~l~~~-~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~~~~---~~a~~~id~~~~~~~~~~~~i~~~l  170 (173)
T 1kag_A           99 VVVYLETT-IEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYE---EIADVTIRTDDQSAKVVANQIIHML  170 (173)
T ss_dssp             EEEECCCC-HHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHH---HHCSEEC-----CHHHHHHHHHHHH
T ss_pred             EEEEEeCC-HHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHHHHH---hhCCEEEECCCCCHHHHHHHHHHHH
Confidence            57777764 7788877766521       11 2333333332222211   2348898876  6888888887554

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=87.43  E-value=0.25  Score=51.36  Aligned_cols=36  Identities=8%  Similarity=0.062  Sum_probs=22.2

Q ss_pred             CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh
Q psy6613         148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS  183 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p  183 (510)
                      ++. +|++|||||||.++|+.....+....+.|||.+
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~  218 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDP  218 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCc
Confidence            444 999999999999999972212445577888876

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=87.43  E-value=0.28  Score=43.41  Aligned_cols=21  Identities=24%  Similarity=0.091  Sum_probs=18.4

Q ss_pred             CCeE-EecCcCChHHHHHHHhc
Q psy6613         147 GMII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      .+++ +|++|||||||.++|+.
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3555 99999999999999997

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=87.34  E-value=0.24  Score=42.47  Aligned_cols=20  Identities=10%  Similarity=0.036  Sum_probs=17.6

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            444 99999999999999986

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=87.20  E-value=0.23  Score=42.52  Aligned_cols=20  Identities=5%  Similarity=-0.129  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            344 99999999999999997

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=86.69  E-value=0.69  Score=43.62  Aligned_cols=19  Identities=5%  Similarity=0.218  Sum_probs=16.8

Q ss_pred             eEEecCcCChHHHHHHHhc
Q psy6613         149 IIITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~  167 (510)
                      +|.||+|+||||+.+.|..
T Consensus        49 ll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           49 LMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             EEECCTTSCHHHHHHHHHH
T ss_pred             EEECcCCCCHHHHHHHHHH
Confidence            3499999999999998876

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=86.29  E-value=0.4  Score=45.88  Aligned_cols=21  Identities=10%  Similarity=0.037  Sum_probs=17.5

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |.++  +||+|+|||||.+-|..
T Consensus        31 Ge~~~iiG~nGsGKSTLl~~l~G   53 (235)
T 3tif_A           31 GEFVSIMGPSGSGKSTMLNIIGC   53 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            4444  99999999999998776

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=86.22  E-value=0.34  Score=50.23  Aligned_cols=38  Identities=26%  Similarity=0.405  Sum_probs=28.6

Q ss_pred             cCCCCCcccc-----CCCcceEEeCCCCCCchhHHHHHHHHHHHHhhhc
Q psy6613         403 QETTTPYDVV-----PSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRF  446 (510)
Q Consensus       403 ~~~~~~y~~~-----p~~rp~~~~gp~~~~~~~~~~m~~al~~~l~~~f  446 (510)
                      .+..++|+.|     +..|||||.|||-      +.+.++|++...+.|
T Consensus       215 ~~~~~~YE~V~~~~~~~~r~iVlsGPsg------~tl~~~L~~~~p~~~  257 (391)
T 3tsz_A          215 QTKFPAYERVVLREAGFLRPVTIFGPIA------DVAREKLAREEPDIY  257 (391)
T ss_dssp             --CCCSEEEEEEEECSSCCCEEEESTTH------HHHHHHHHHHCTTTE
T ss_pred             cccCCCcceEECcCCCCCCEEEEECCCH------HHHHHHHHhhCcccc
Confidence            4567899999     8999999999994      567777777654433

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=86.10  E-value=0.32  Score=44.59  Aligned_cols=18  Identities=6%  Similarity=0.051  Sum_probs=16.2

Q ss_pred             EEecCcCChHHHHHHHhc
Q psy6613         150 IITRVTADISLAKRSLMS  167 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~  167 (510)
                      |+||+|+|||||.+.|..
T Consensus         5 l~G~nGsGKTTLl~~l~g   22 (178)
T 1ye8_A            5 ITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             EECCTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            389999999999998876

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=85.86  E-value=0.47  Score=44.99  Aligned_cols=21  Identities=19%  Similarity=0.009  Sum_probs=17.5

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |.++  +||+|+|||||.+-|..
T Consensus        30 Ge~~~iiG~nGsGKSTLl~~l~G   52 (224)
T 2pcj_A           30 GEFVSIIGASGSGKSTLLYILGL   52 (224)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            3444  99999999999998776

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=85.71  E-value=4.9  Score=41.93  Aligned_cols=45  Identities=13%  Similarity=0.127  Sum_probs=27.3

Q ss_pred             HcCCeEEEEeccCCch------hHhhhc-CCCceEEEEeCCCHHHHHHHHHhc
Q psy6613         200 STLQLVVLDCDTINHP------SQLAKT-NLSPCIVYLKISSPKVLQRLIKSR  245 (510)
Q Consensus       200 ~sGKi~ILDID~qg~~------lq~lks-~l~PivIFIkPPS~e~L~~rLr~R  245 (510)
                      ..|.++|+|..-.. .      .+.++. ....+++.+..++.+.+.+++..+
T Consensus       121 ~~G~~vV~D~tn~~-~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~  172 (469)
T 1bif_A          121 EGGHVAVFDATNTT-RERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQV  172 (469)
T ss_dssp             TCCSEEEEESCCCS-HHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCC-HHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHh
Confidence            57889999997654 1      111222 222334444458889998887653

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=85.70  E-value=0.51  Score=46.75  Aligned_cols=21  Identities=19%  Similarity=0.080  Sum_probs=17.6

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      +.++  +||+|||||||.+.|+.
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~~  187 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLTG  187 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            4444  99999999999999874

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=85.69  E-value=0.84  Score=43.82  Aligned_cols=19  Identities=11%  Similarity=0.207  Sum_probs=17.0

Q ss_pred             eEEecCcCChHHHHHHHhc
Q psy6613         149 IIITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~  167 (510)
                      +|.||+|+|||++.+.+..
T Consensus        58 ll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           58 LLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             EEESSSSSCHHHHHHHHHH
T ss_pred             EEECcCCCCHHHHHHHHHH
Confidence            4499999999999998887

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.60  E-value=0.53  Score=49.61  Aligned_cols=65  Identities=11%  Similarity=0.106  Sum_probs=36.3

Q ss_pred             CCCeEEecCcCChHHHHHHHhc--CCCCceeeecCCCchhhhhhhcccHHHHHHHHHcCCeEEEEecc
Q psy6613         146 PGMIIITRVTADISLAKRSLMS--NPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDT  211 (510)
Q Consensus       146 ~~RpI~GPsGvGKsTL~~rLL~--~P~~F~~sVshTTR~pFe~~I~TslesI~~vi~sGKi~ILDID~  211 (510)
                      +|-++.||+|+|||++.+.+..  .-.-|....+.. -..+..+-...+..++..++....||+-+|-
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l-~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDE  273 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF-VHKYLGEGPRMVRDVFRLARENAPSIIFIDE  273 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT-CCSSCSHHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh-hccccchhHHHHHHHHHHHHHcCCCeeechh
Confidence            4445599999999999998887  222222222211 1111111113455566666666666666654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=85.57  E-value=0.44  Score=44.56  Aligned_cols=20  Identities=20%  Similarity=0.308  Sum_probs=18.0

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus        31 ~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            454 99999999999999997

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=85.53  E-value=0.35  Score=43.05  Aligned_cols=20  Identities=10%  Similarity=0.189  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            344 99999999999999987

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=85.47  E-value=0.39  Score=43.39  Aligned_cols=19  Identities=11%  Similarity=0.046  Sum_probs=17.1

Q ss_pred             EecCcCChHHHHHHHhc-CC
Q psy6613         151 ITRVTADISLAKRSLMS-NP  169 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P  169 (510)
                      +||+|+|||||.+.|.. .|
T Consensus        39 ~G~nGaGKTTLlr~l~g~l~   58 (158)
T 1htw_A           39 NGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             ECSTTSSHHHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHHhCC
Confidence            99999999999998877 54

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.46  E-value=0.65  Score=48.73  Aligned_cols=68  Identities=12%  Similarity=0.131  Sum_probs=38.9

Q ss_pred             CCCCCeEEecCcCChHHHHHHHhc-CCCCceeeecCCCchhhhhhhcccHHHHHHHHHcCCeEEEEecc
Q psy6613         144 PSPGMIIITRVTADISLAKRSLMS-NPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDT  211 (510)
Q Consensus       144 Ps~~RpI~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~pFe~~I~TslesI~~vi~sGKi~ILDID~  211 (510)
                      |.+|-++.||+|+|||.|.+.+.. .--.|...-...--..+..+-...+..++..++....||+-+|-
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDE  249 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDE  249 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeec
Confidence            335556699999999999998887 22223222111111111111113456667777777777777664

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=85.39  E-value=0.78  Score=45.63  Aligned_cols=24  Identities=13%  Similarity=0.277  Sum_probs=19.0

Q ss_pred             CCCCCeEEecCcCChHHHHHHHhc
Q psy6613         144 PSPGMIIITRVTADISLAKRSLMS  167 (510)
Q Consensus       144 Ps~~RpI~GPsGvGKsTL~~rLL~  167 (510)
                      |..+-++.||+|+|||++.+.+..
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHHH
Confidence            333344599999999999998887

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=85.26  E-value=0.49  Score=41.90  Aligned_cols=20  Identities=15%  Similarity=0.013  Sum_probs=18.1

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|..
T Consensus        50 ~i~vvG~~g~GKSsll~~l~~   70 (193)
T 2ged_A           50 SIIIAGPQNSGKTSLLTLLTT   70 (193)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            455 99999999999999997

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=85.24  E-value=0.24  Score=49.94  Aligned_cols=21  Identities=5%  Similarity=-0.107  Sum_probs=18.0

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      +.++  +||+|||||||.+.|+.
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g  195 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISP  195 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC
T ss_pred             CCEEEEECCCCCCHHHHHHHhcc
Confidence            4444  99999999999999986

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=85.11  E-value=0.43  Score=43.55  Aligned_cols=17  Identities=6%  Similarity=0.024  Sum_probs=15.7

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+|||||.+.|..
T Consensus        31 ~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           31 FGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            99999999999998875

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=84.98  E-value=0.38  Score=43.32  Aligned_cols=17  Identities=12%  Similarity=-0.089  Sum_probs=16.4

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|||||||.++|..
T Consensus        11 vG~~g~GKSTLl~~l~~   27 (199)
T 2f9l_A           11 IGDSGVGKSNLLSRFTR   27 (199)
T ss_dssp             ESSTTSSHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHhc
Confidence            99999999999999987

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=84.97  E-value=0.91  Score=49.37  Aligned_cols=133  Identities=14%  Similarity=0.095  Sum_probs=66.2

Q ss_pred             EecCcCChHHHHHHHhc-CC----CCceeeecCCCchh------hh-hh----hcccHHHHHHHHHcCCeEEEEeccCCc
Q psy6613         151 ITRVTADISLAKRSLMS-NP----SKRAIMERSNSRSS------VL-TE----VQTEIERVYELASTLQLVVLDCDTINH  214 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P----~~F~~sVshTTR~p------Fe-~~----I~TslesI~~vi~sGKi~ILDID~qg~  214 (510)
                      .|++|+||||+.+.|-+ ..    -.|.+.-...-|..      |. ++    +..-.+.+..+++.|.+||.++-..-.
T Consensus       402 ~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i~ri~~v~~~~~~~g~~VI~~~is~~~  481 (573)
T 1m8p_A          402 TGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAVIAAPIAPYE  481 (573)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCCCH
T ss_pred             ecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHhCCCEEEEEcCCCcH
Confidence            89999999999998876 22    11222111111111      10 00    000112455667889999998533100


Q ss_pred             -hhHhhhc---CCCc-eEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh------cC--CCCccEEEeCC--C
Q psy6613         215 -PSQLAKT---NLSP-CIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQ------CP--QEMFDVILDEN--Q  279 (510)
Q Consensus       215 -~lq~lks---~l~P-ivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq------~~--~~~FD~VIvND--d  279 (510)
                       ..+.++.   ...+ ++||+.. +.+++.+|+. ++      ...+- ...+++.      .|  +..-|++|.++  +
T Consensus       482 ~~R~~~r~l~~~~g~~~~V~Lda-~~ev~~~R~~-r~------l~~~~-~~~~i~~~~~~r~~~~~p~~~dl~IDts~~s  552 (573)
T 1m8p_A          482 ESRKFARDAVSQAGSFFLVHVAT-PLEHCEQSDK-RG------IYAAA-RRGEIKGFTGVDDPYETPEKADLVVDFSKQS  552 (573)
T ss_dssp             HHHHHHHHHHHTTSEEEEEEECC-CHHHHHHHCS-SC------HHHHH-HTTSSSSCBTTTBCCCCCSSCSEEECTTTSC
T ss_pred             HHHHHHHHHHHhcCCeEEEEEeC-CHHHHHHHhc-cc------chhhh-hHHHHHHHHhccccccccCCCCEEEECCCCC
Confidence             0011121   1123 6777776 5677777742 11      00000 0011111      11  23458888665  5


Q ss_pred             HHHHHHHHHHHHH
Q psy6613         280 LEDACEHIAEYLE  292 (510)
Q Consensus       280 Ld~A~~eL~~ile  292 (510)
                      ++++++++.++|+
T Consensus       553 ~eevv~~Il~~l~  565 (573)
T 1m8p_A          553 VRSIVHEIILVLE  565 (573)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8989988886664

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=84.91  E-value=0.4  Score=46.94  Aligned_cols=18  Identities=11%  Similarity=0.128  Sum_probs=16.6

Q ss_pred             EEecCcCChHHHHHHHhc
Q psy6613         150 IITRVTADISLAKRSLMS  167 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~  167 (510)
                      |+||+|+|||||.+.|..
T Consensus         7 lvG~nGaGKSTLln~L~g   24 (270)
T 3sop_A            7 VVGQSGLGKSTLVNTLFK   24 (270)
T ss_dssp             EEESSSSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHhC
Confidence            399999999999999887

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=84.76  E-value=0.43  Score=42.99  Aligned_cols=17  Identities=12%  Similarity=-0.089  Sum_probs=16.4

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|||||||.++|..
T Consensus        35 vG~~g~GKSTLl~~l~~   51 (191)
T 1oix_A           35 IGDSGVGKSNLLSRFTR   51 (191)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHhc
Confidence            99999999999999987

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=84.74  E-value=0.36  Score=43.87  Aligned_cols=37  Identities=19%  Similarity=0.011  Sum_probs=25.3

Q ss_pred             CCeE-EecCcCChHHHHHHHhc-CCCCceeeecCCCchh
Q psy6613         147 GMII-ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS  183 (510)
Q Consensus       147 ~RpI-~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p  183 (510)
                      .+++ +|++|||||||.++|+. ....+....+.||+..
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~   68 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI   68 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce
Confidence            3555 99999999999999997 3222333445566653

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=84.64  E-value=0.43  Score=41.64  Aligned_cols=17  Identities=18%  Similarity=0.042  Sum_probs=16.4

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|||||||.++|..
T Consensus         9 vG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            9 IGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             ECSTTSSHHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHhC
Confidence            99999999999999987

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=84.60  E-value=0.57  Score=48.23  Aligned_cols=21  Identities=19%  Similarity=0.131  Sum_probs=18.1

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      +.++  +||+|||||||.+.|+.
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g  237 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLG  237 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCEEEEECCCCccHHHHHHHHhc
Confidence            4444  99999999999999987

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=84.60  E-value=0.56  Score=45.85  Aligned_cols=21  Identities=29%  Similarity=0.213  Sum_probs=17.7

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |.++  +||+|+|||||.+-|..
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~G   59 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTG   59 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            4454  99999999999998876

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=84.57  E-value=0.47  Score=40.76  Aligned_cols=20  Identities=5%  Similarity=0.024  Sum_probs=17.5

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            344 99999999999999986

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=84.52  E-value=0.54  Score=45.78  Aligned_cols=21  Identities=24%  Similarity=0.153  Sum_probs=17.7

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |.++  +||+|+|||||.+-|..
T Consensus        32 Ge~~~liG~nGsGKSTLlk~l~G   54 (262)
T 1b0u_A           32 GDVISIIGSSGSGKSTFLRCINF   54 (262)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            4454  99999999999998876

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=84.33  E-value=0.51  Score=46.81  Aligned_cols=32  Identities=9%  Similarity=0.086  Sum_probs=23.5

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS  183 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p  183 (510)
                      +|.+|||||||.++|+. ... .....+.|||..
T Consensus        13 vG~~nvGKSTLln~l~g~~~~-ivs~~~~tTr~~   45 (301)
T 1wf3_A           13 VGKPNVGKSTLLNNLLGVKVA-PISPRPQTTRKR   45 (301)
T ss_dssp             ECSTTSSHHHHHHHHHTSCCS-CCCSSSCCCCSC
T ss_pred             ECCCCCCHHHHHHHHhCCcee-eecCCCCceeEE
Confidence            99999999999999997 321 122356688854

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=84.14  E-value=0.58  Score=40.39  Aligned_cols=20  Identities=5%  Similarity=0.029  Sum_probs=17.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus        11 ~i~v~G~~~~GKssli~~l~~   31 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQ   31 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            444 99999999999999987

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=84.02  E-value=0.54  Score=44.36  Aligned_cols=17  Identities=0%  Similarity=-0.056  Sum_probs=15.9

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+||||+.+.|.+
T Consensus        33 ~G~~GsGKSTl~k~La~   49 (246)
T 2bbw_A           33 LGPPGSGKGTVCQRIAQ   49 (246)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            99999999999999984

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=83.98  E-value=0.58  Score=45.25  Aligned_cols=21  Identities=14%  Similarity=0.056  Sum_probs=17.6

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |.++  +||+|+|||||.+.|..
T Consensus        33 Ge~~~liG~nGsGKSTLlk~l~G   55 (257)
T 1g6h_A           33 GDVTLIIGPNGSGKSTLINVITG   55 (257)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            3444  99999999999998876

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=83.96  E-value=4.4  Score=36.18  Aligned_cols=42  Identities=14%  Similarity=0.139  Sum_probs=28.1

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchhhhhhhcccHHHHHHHHHcC-CeEEEEeccCCchhHhhhc
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTL-QLVVLDCDTINHPSQLAKT  221 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~pFe~~I~TslesI~~vi~sG-Ki~ILDID~qg~~lq~lks  221 (510)
                      .+-.|+||||+.-.|..                             .+.+.| +++++|.|++++....+..
T Consensus         8 s~kgG~GKTt~a~~la~-----------------------------~la~~g~~vlliD~D~~~~~~~~~~~   50 (206)
T 4dzz_A            8 NPKGGSGKTTAVINIAT-----------------------------ALSRSGYNIAVVDTDPQMSLTNWSKA   50 (206)
T ss_dssp             CSSTTSSHHHHHHHHHH-----------------------------HHHHTTCCEEEEECCTTCHHHHHHTT
T ss_pred             eCCCCccHHHHHHHHHH-----------------------------HHHHCCCeEEEEECCCCCCHHHHHhc
Confidence            45678999998865542                             112234 7999999999955554443

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=83.87  E-value=2.6  Score=40.60  Aligned_cols=19  Identities=0%  Similarity=-0.022  Sum_probs=16.9

Q ss_pred             eEEecCcCChHHHHHHHhc
Q psy6613         149 IIITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~  167 (510)
                      +|.||+|+|||++.+.+..
T Consensus        42 ll~G~~GtGKT~la~~i~~   60 (324)
T 1hqc_A           42 LLFGPPGLGKTTLAHVIAH   60 (324)
T ss_dssp             EEECCTTCCCHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            4599999999999998876

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=83.83  E-value=0.54  Score=46.41  Aligned_cols=21  Identities=10%  Similarity=0.235  Sum_probs=17.9

Q ss_pred             CCeEEecCcCChHHHHHHHhc
Q psy6613         147 GMIIITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI~GPsGvGKsTL~~rLL~  167 (510)
                      +-++.||+|+|||++.+.+.+
T Consensus        53 ~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           53 GILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             EEEEECSSSSCHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            344599999999999998887

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=83.80  E-value=0.5  Score=40.70  Aligned_cols=20  Identities=0%  Similarity=-0.026  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCccHHHHHHHHhc
Confidence            344 99999999999999997

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=83.75  E-value=0.49  Score=41.57  Aligned_cols=32  Identities=9%  Similarity=-0.166  Sum_probs=21.9

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchh
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS  183 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p  183 (510)
                      +|++|||||||.++|.... .+....+.+|...
T Consensus        13 vG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~   44 (188)
T 2wjg_A           13 IGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEK   44 (188)
T ss_dssp             ECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEE
T ss_pred             ECCCCCCHHHHHHHHhCCC-ccccCCCCeeccc
Confidence            9999999999999998721 1223344455443

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=83.74  E-value=0.49  Score=40.33  Aligned_cols=20  Identities=5%  Similarity=-0.003  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~   27 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCK   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            344 99999999999999987

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=83.66  E-value=0.68  Score=39.98  Aligned_cols=20  Identities=5%  Similarity=0.049  Sum_probs=17.6

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~   30 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVN   30 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            344 99999999999999987

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=83.59  E-value=0.31  Score=43.90  Aligned_cols=17  Identities=29%  Similarity=0.182  Sum_probs=16.0

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|||||||.++|+.
T Consensus        32 vG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           32 AGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             EECTTSSHHHHHTTTCC
T ss_pred             ECCCCCCHHHHHHHHhC
Confidence            99999999999998876

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=83.55  E-value=0.64  Score=44.21  Aligned_cols=21  Identities=14%  Similarity=0.143  Sum_probs=17.8

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |.++  +||+|+|||||.+-|..
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~G   56 (229)
T 2pze_A           34 GQLLAVAGSTGAGKTSLLMMIMG   56 (229)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            4454  99999999999998876

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=83.51  E-value=0.55  Score=39.62  Aligned_cols=19  Identities=11%  Similarity=0.097  Sum_probs=17.3

Q ss_pred             eE-EecCcCChHHHHHHHhc
Q psy6613         149 II-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI-~GPsGvGKsTL~~rLL~  167 (510)
                      ++ +|++|||||||.++|+.
T Consensus         6 i~v~G~~~~GKssl~~~l~~   25 (166)
T 2ce2_X            6 LVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            44 99999999999999987

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.48  E-value=0.75  Score=48.62  Aligned_cols=66  Identities=9%  Similarity=0.109  Sum_probs=37.0

Q ss_pred             CCCCeEEecCcCChHHHHHHHhc-CCCCcee-eecCCCchhhhhhhcccHHHHHHHHHcCCeEEEEecc
Q psy6613         145 SPGMIIITRVTADISLAKRSLMS-NPSKRAI-MERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDT  211 (510)
Q Consensus       145 s~~RpI~GPsGvGKsTL~~rLL~-~P~~F~~-sVshTTR~pFe~~I~TslesI~~vi~sGKi~ILDID~  211 (510)
                      .+|-++.||+|+|||++.+.|.. .--.|.. ..+.- -..+..+-..-+..++..++....||+=+|-
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l-~sk~~Gese~~ir~~F~~A~~~~P~IifiDE  282 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGI-VDKYIGESARIIREMFAYAKEHEPCIIFMDE  282 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGT-CCSSSSHHHHHHHHHHHHHHHSCSEEEEEEC
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhh-ccccchHHHHHHHHHHHHHHhcCCceeeeec
Confidence            34455699999999999999887 2222322 22211 1111111112345566666777777776654

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=83.41  E-value=0.64  Score=40.52  Aligned_cols=20  Identities=10%  Similarity=0.075  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus         6 ki~v~G~~~~GKSsli~~l~~   26 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQ   26 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            344 99999999999999997

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=83.34  E-value=0.65  Score=44.80  Aligned_cols=17  Identities=12%  Similarity=0.114  Sum_probs=15.9

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+|||||.+.|..
T Consensus        41 ~G~nGsGKSTLl~~l~G   57 (247)
T 2ff7_A           41 VGRSGSGKSTLTKLIQR   57 (247)
T ss_dssp             ECSTTSSHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHhc
Confidence            99999999999998876

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=83.30  E-value=0.53  Score=47.14  Aligned_cols=22  Identities=27%  Similarity=0.231  Sum_probs=18.4

Q ss_pred             CCCeE--EecCcCChHHHHHHHhc
Q psy6613         146 PGMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       146 ~~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      .+.+|  +||+|+|||||.+.|..
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchHHHHHHHHHh
Confidence            34565  89999999999998776

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=83.27  E-value=0.5  Score=42.15  Aligned_cols=17  Identities=0%  Similarity=-0.081  Sum_probs=15.6

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+|||||.+.+..
T Consensus        44 ~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           44 VGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             CCSSSSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            89999999999998775

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=83.22  E-value=0.66  Score=44.40  Aligned_cols=21  Identities=19%  Similarity=0.227  Sum_probs=17.6

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |.++  +||+|+|||||.+-|..
T Consensus        32 Ge~~~l~G~nGsGKSTLl~~l~G   54 (240)
T 1ji0_A           32 GQIVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            4444  99999999999998776

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=83.22  E-value=0.54  Score=39.82  Aligned_cols=17  Identities=6%  Similarity=-0.029  Sum_probs=16.3

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|||||||.++|+.
T Consensus         9 ~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            9 LGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHc
Confidence            99999999999999987

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=83.09  E-value=0.82  Score=45.06  Aligned_cols=21  Identities=10%  Similarity=0.028  Sum_probs=17.7

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |.++  +||+|+|||||.+.|..
T Consensus        34 Ge~~~iiGpnGsGKSTLl~~l~G   56 (275)
T 3gfo_A           34 GEVTAILGGNGVGKSTLFQNFNG   56 (275)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHc
Confidence            4444  99999999999998876

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=83.00  E-value=0.67  Score=45.33  Aligned_cols=21  Identities=24%  Similarity=0.173  Sum_probs=17.6

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |.++  +||+|+|||||.+-|..
T Consensus        50 Gei~~liG~NGsGKSTLlk~l~G   72 (263)
T 2olj_A           50 GEVVVVIGPSGSGKSTFLRCLNL   72 (263)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHc
Confidence            4454  99999999999998776

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=82.96  E-value=0.85  Score=45.34  Aligned_cols=17  Identities=12%  Similarity=0.083  Sum_probs=16.3

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|+|||||.+.|+.
T Consensus        10 ~G~~GaGKTTll~~l~~   26 (318)
T 1nij_A           10 TGFLGAGKTTLLRHILN   26 (318)
T ss_dssp             EESSSSSCHHHHHHHHH
T ss_pred             EecCCCCHHHHHHHHHh
Confidence            89999999999999997

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=82.93  E-value=0.59  Score=44.71  Aligned_cols=17  Identities=18%  Similarity=0.196  Sum_probs=15.7

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+|||||.+-|..
T Consensus        37 ~G~nGsGKSTLl~~l~G   53 (237)
T 2cbz_A           37 VGQVGCGKSSLLSALLA   53 (237)
T ss_dssp             ECSTTSSHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHhc
Confidence            99999999999998776

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=82.85  E-value=1.3  Score=44.88  Aligned_cols=19  Identities=0%  Similarity=0.144  Sum_probs=16.8

Q ss_pred             eEEecCcCChHHHHHHHhc
Q psy6613         149 IIITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~  167 (510)
                      +|.||+|+|||+|.+.+..
T Consensus       152 LL~GppGtGKT~la~aia~  170 (389)
T 3vfd_A          152 LLFGPPGNGKTMLAKAVAA  170 (389)
T ss_dssp             EEESSTTSCHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3399999999999998877

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=82.76  E-value=0.77  Score=44.49  Aligned_cols=17  Identities=12%  Similarity=-0.046  Sum_probs=16.0

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+|||||.+.|..
T Consensus        32 iG~NGsGKSTLlk~l~G   48 (249)
T 2qi9_C           32 VGPNGAGKSTLLARMAG   48 (249)
T ss_dssp             ECCTTSSHHHHHHHHTT
T ss_pred             ECCCCCcHHHHHHHHhC
Confidence            99999999999998877

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=82.54  E-value=0.59  Score=39.60  Aligned_cols=20  Identities=15%  Similarity=0.061  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|+|||||.++|+.
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~   26 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            344 99999999999999987

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=82.51  E-value=0.76  Score=40.10  Aligned_cols=20  Identities=10%  Similarity=0.001  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            444 99999999999999996

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=82.51  E-value=0.69  Score=45.06  Aligned_cols=35  Identities=9%  Similarity=0.018  Sum_probs=20.5

Q ss_pred             CeE-EecCcCChHHHHHHHhc-CCCCceeeecCCCchh
Q psy6613         148 MII-ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS  183 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p  183 (510)
                      +++ +|.+|||||||.++|.. ... -...+++||+..
T Consensus       101 ~v~~vG~~~vGKSslin~l~~~~~~-~~~~~~g~T~~~  137 (262)
T 3cnl_A          101 RVLIVGVPNTGKSTIINKLKGKRAS-SVGAQPGITKGI  137 (262)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTCC-----------CCS
T ss_pred             heEEeCCCCCCHHHHHHHHhccccc-ccCCCCCCccce
Confidence            454 99999999999999997 332 234567888764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=82.46  E-value=0.65  Score=44.71  Aligned_cols=21  Identities=19%  Similarity=0.102  Sum_probs=17.4

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |.++  +||+|+|||||.+-|..
T Consensus        29 Ge~~~l~G~nGsGKSTLlk~l~G   51 (250)
T 2d2e_A           29 GEVHALMGPNGAGKSTLGKILAG   51 (250)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            4444  99999999999997775

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=82.44  E-value=0.63  Score=39.72  Aligned_cols=20  Identities=15%  Similarity=0.052  Sum_probs=17.6

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            344 99999999999999997

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=82.40  E-value=0.7  Score=41.47  Aligned_cols=20  Identities=10%  Similarity=0.117  Sum_probs=17.6

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||+|.++|..
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            455 99999999999998887

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=82.39  E-value=0.71  Score=43.78  Aligned_cols=18  Identities=0%  Similarity=-0.095  Sum_probs=16.2

Q ss_pred             EEecCcCChHHHHHHHhc
Q psy6613         150 IITRVTADISLAKRSLMS  167 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~  167 (510)
                      |+||+|+|||||.+-|..
T Consensus        40 iiG~NGsGKSTLlk~l~G   57 (214)
T 1sgw_A           40 FHGPNGIGKTTLLKTIST   57 (214)
T ss_dssp             EECCTTSSHHHHHHHHTT
T ss_pred             EECCCCCCHHHHHHHHhc
Confidence            399999999999998876

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=82.36  E-value=0.77  Score=47.31  Aligned_cols=21  Identities=24%  Similarity=0.248  Sum_probs=17.8

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |.++  +||+|+|||||.+.|..
T Consensus        30 Ge~~~llGpsGsGKSTLLr~iaG   52 (359)
T 3fvq_A           30 GEILFIIGASGCGKTTLLRCLAG   52 (359)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCchHHHHHHHHhc
Confidence            4444  99999999999998876

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=82.30  E-value=0.74  Score=45.06  Aligned_cols=17  Identities=12%  Similarity=-0.023  Sum_probs=15.9

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+|||||.+-|..
T Consensus        51 ~G~nGsGKSTLlk~l~G   67 (271)
T 2ixe_A           51 VGPNGSGKSTVAALLQN   67 (271)
T ss_dssp             ECSTTSSHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHhc
Confidence            99999999999998876

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=82.29  E-value=0.61  Score=39.71  Aligned_cols=17  Identities=12%  Similarity=0.040  Sum_probs=16.4

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|||||||.++|+.
T Consensus         9 ~G~~~~GKssli~~l~~   25 (170)
T 1ek0_A            9 LGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhc
Confidence            99999999999999987

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=82.25  E-value=0.5  Score=41.82  Aligned_cols=20  Identities=5%  Similarity=-0.064  Sum_probs=17.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus        10 ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            444 99999999999999987

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=82.21  E-value=0.61  Score=46.04  Aligned_cols=31  Identities=19%  Similarity=0.224  Sum_probs=22.5

Q ss_pred             EecCcCChHHHHHHHhcCCCCcee--eecCCCchh
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAI--MERSNSRSS  183 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~--sVshTTR~p  183 (510)
                      +|++|||||||.++|+..  ++..  ..+.|||..
T Consensus        14 vG~~nvGKSTLln~L~g~--~~~i~s~~~~tTr~~   46 (301)
T 1ega_A           14 VGRPNVGKSTLLNKLLGQ--KISITSRKAQTTRHR   46 (301)
T ss_dssp             ECSSSSSHHHHHHHHHTC--SEEECCCCSSCCSSC
T ss_pred             ECCCCCCHHHHHHHHHCC--CccccCCCCCcceee
Confidence            999999999999999972  2221  235577743

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=82.19  E-value=0.76  Score=44.72  Aligned_cols=21  Identities=24%  Similarity=0.211  Sum_probs=17.7

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |.++  +||+|+|||||.+.|..
T Consensus        41 Gei~~l~G~NGsGKSTLlk~l~G   63 (256)
T 1vpl_A           41 GEIFGLIGPNGAGKTTTLRIIST   63 (256)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            4444  99999999999998876

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=82.15  E-value=1.8  Score=42.12  Aligned_cols=22  Identities=9%  Similarity=0.253  Sum_probs=18.1

Q ss_pred             CCCeEEecCcCChHHHHHHHhc
Q psy6613         146 PGMIIITRVTADISLAKRSLMS  167 (510)
Q Consensus       146 ~~RpI~GPsGvGKsTL~~rLL~  167 (510)
                      .|-+++||+|+|||||.+.|..
T Consensus        45 ~GvlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           45 AGVLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             SEEEEESSTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3433499999999999998887

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=82.14  E-value=0.62  Score=39.64  Aligned_cols=17  Identities=6%  Similarity=-0.054  Sum_probs=16.4

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|||||||.++|+.
T Consensus         9 ~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            9 LGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHc
Confidence            99999999999999987

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=82.00  E-value=0.69  Score=40.46  Aligned_cols=20  Identities=25%  Similarity=0.122  Sum_probs=17.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~   23 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTG   23 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            344 99999999999999997

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=81.91  E-value=0.69  Score=44.52  Aligned_cols=17  Identities=12%  Similarity=0.012  Sum_probs=15.9

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+|||||.+-|..
T Consensus        30 iG~nGsGKSTLl~~l~G   46 (240)
T 2onk_A           30 LGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             ECCTTSSHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHhC
Confidence            99999999999998876

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=81.87  E-value=0.61  Score=40.27  Aligned_cols=20  Identities=10%  Similarity=-0.014  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            444 99999999999999987

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=81.86  E-value=0.56  Score=43.35  Aligned_cols=34  Identities=9%  Similarity=-0.110  Sum_probs=20.9

Q ss_pred             CeE-EecCcCChHHHHHHHhcCCCCce-eeecCCCchh
Q psy6613         148 MII-ITRVTADISLAKRSLMSNPSKRA-IMERSNSRSS  183 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~~P~~F~-~sVshTTR~p  183 (510)
                      +++ +|++|||||||.++|+..  .|. ...+.||+..
T Consensus        31 kI~vvG~~~vGKSsLin~l~~~--~~~~~~~~~~t~~~   66 (228)
T 2qu8_A           31 TIILSGAPNVGKSSFMNIVSRA--NVDVQSYSFTTKNL   66 (228)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTT--CEEEECC-----CE
T ss_pred             EEEEECCCCCCHHHHHHHHhCC--CCccCCCCCcceee
Confidence            455 999999999999999872  232 2345566644

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=81.85  E-value=0.75  Score=45.48  Aligned_cols=22  Identities=27%  Similarity=0.191  Sum_probs=18.5

Q ss_pred             CCCeE--EecCcCChHHHHHHHhc
Q psy6613         146 PGMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       146 ~~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      .+.+|  +||+|+|||||.+.|..
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            34565  89999999999998876

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=81.79  E-value=0.69  Score=44.95  Aligned_cols=17  Identities=12%  Similarity=0.090  Sum_probs=15.9

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+|||||.+-|..
T Consensus        52 ~G~nGsGKSTLl~~l~G   68 (260)
T 2ghi_A           52 VGHTGSGKSTIAKLLYR   68 (260)
T ss_dssp             ECSTTSSHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHhc
Confidence            99999999999998876

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=81.76  E-value=0.67  Score=39.69  Aligned_cols=17  Identities=0%  Similarity=-0.197  Sum_probs=16.4

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|||||||.++|+.
T Consensus        12 ~G~~~~GKssli~~l~~   28 (170)
T 1z08_A           12 LGEGCVGKTSLVLRYCE   28 (170)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHc
Confidence            99999999999999997

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=81.73  E-value=0.82  Score=44.28  Aligned_cols=21  Identities=19%  Similarity=0.180  Sum_probs=17.6

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |.++  +||+|+|||||.+-|..
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~G   53 (253)
T 2nq2_C           31 GDILAVLGQNGCGKSTLLDLLLG   53 (253)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            3444  99999999999998876

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=81.70  E-value=1.7  Score=45.33  Aligned_cols=62  Identities=13%  Similarity=0.145  Sum_probs=33.5

Q ss_pred             eEEecCcCChHHHHHHHhc-CCCCceeeecCCC-chhhhhhhcccHHHHHHHHHcCCeEEEEec
Q psy6613         149 IIITRVTADISLAKRSLMS-NPSKRAIMERSNS-RSSVLTEVQTEIERVYELASTLQLVVLDCD  210 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~-~P~~F~~sVshTT-R~pFe~~I~TslesI~~vi~sGKi~ILDID  210 (510)
                      +|.||+|+|||+|.+.|.. ....-.+.+++.. -..+.......+..+...+.....|||=+|
T Consensus       171 LL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iD  234 (444)
T 2zan_A          171 LLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFID  234 (444)
T ss_dssp             EEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEES
T ss_pred             EEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEe
Confidence            3499999999999998887 4222222333321 011111112345566666666666666565

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=81.67  E-value=0.72  Score=44.97  Aligned_cols=17  Identities=12%  Similarity=0.016  Sum_probs=15.7

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+|||||.+.|..
T Consensus        52 ~G~NGsGKSTLlk~l~G   68 (267)
T 2zu0_C           52 MGPNGSGKSTLSATLAG   68 (267)
T ss_dssp             ECCTTSSHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHhC
Confidence            99999999999998775

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=81.65  E-value=0.66  Score=40.57  Aligned_cols=20  Identities=10%  Similarity=0.011  Sum_probs=17.9

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus         9 ki~v~G~~~~GKSsli~~l~~   29 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTK   29 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            444 99999999999999997

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=81.64  E-value=0.77  Score=45.21  Aligned_cols=33  Identities=12%  Similarity=-0.071  Sum_probs=17.4

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchh
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS  183 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p  183 (510)
                      +|.+|||||||.+.|+..........|.|||..
T Consensus       126 vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~  158 (282)
T 1puj_A          126 IGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ  158 (282)
T ss_dssp             EESTTSSHHHHHHHHHTSCCC------------
T ss_pred             EecCCCchHHHHHHHhcCceeecCCCCCeeeee
Confidence            999999999999999972212334467788865

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=81.62  E-value=0.66  Score=40.10  Aligned_cols=17  Identities=6%  Similarity=-0.080  Sum_probs=16.4

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|||||||.++|+.
T Consensus        13 ~G~~~~GKSsli~~l~~   29 (177)
T 1wms_A           13 LGDGGVGKSSLMNRYVT   29 (177)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHc
Confidence            99999999999999997

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=81.59  E-value=0.76  Score=44.01  Aligned_cols=17  Identities=12%  Similarity=-0.195  Sum_probs=15.7

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+|||||.+-|..
T Consensus        34 ~G~nGsGKSTLl~~l~G   50 (243)
T 1mv5_A           34 AGPSGGGKSTIFSLLER   50 (243)
T ss_dssp             ECCTTSSHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHhc
Confidence            99999999999998776

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=81.57  E-value=0.63  Score=46.01  Aligned_cols=37  Identities=11%  Similarity=0.127  Sum_probs=25.7

Q ss_pred             CCeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh
Q psy6613         147 GMII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS  183 (510)
Q Consensus       147 ~RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p  183 (510)
                      |.+. +|++|||||||.++|+...-......+.|||..
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~   48 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMR   48 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeE
Confidence            3444 999999999999999972111223456677765

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=81.57  E-value=0.71  Score=39.78  Aligned_cols=20  Identities=5%  Similarity=0.082  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus        16 ~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            444 99999999999999986

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=81.46  E-value=0.71  Score=42.82  Aligned_cols=17  Identities=0%  Similarity=-0.236  Sum_probs=15.8

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+||||+.+.|..
T Consensus         7 ~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            7 TGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             ESCCSSCHHHHHHHHHH
T ss_pred             ECCCCChHHHHHHHHHh
Confidence            99999999999998876

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=81.45  E-value=0.68  Score=39.51  Aligned_cols=17  Identities=6%  Similarity=-0.031  Sum_probs=16.4

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|||||||.++|+.
T Consensus        12 ~G~~~~GKSsli~~l~~   28 (170)
T 1z0j_A           12 LGDTGVGKSSIMWRFVE   28 (170)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHc
Confidence            99999999999999997

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=81.44  E-value=0.83  Score=45.01  Aligned_cols=17  Identities=12%  Similarity=-0.166  Sum_probs=15.9

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+|||||.+-|..
T Consensus        53 iG~NGsGKSTLlk~l~G   69 (279)
T 2ihy_A           53 YGLNGAGKTTLLNILNA   69 (279)
T ss_dssp             ECCTTSSHHHHHHHHTT
T ss_pred             ECCCCCcHHHHHHHHhC
Confidence            99999999999998876

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=81.38  E-value=0.7  Score=39.94  Aligned_cols=18  Identities=11%  Similarity=0.065  Sum_probs=16.1

Q ss_pred             EEecCcCChHHHHHHHhc
Q psy6613         150 IITRVTADISLAKRSLMS  167 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~  167 (510)
                      |.||+|+|||++.+.+..
T Consensus        48 l~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           48 LIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             EECCTTSCHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            399999999999998876

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=81.35  E-value=0.69  Score=39.45  Aligned_cols=17  Identities=12%  Similarity=-0.115  Sum_probs=16.4

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|||||+|.++|+.
T Consensus         6 ~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            6 VGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHc
Confidence            99999999999999987

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=81.34  E-value=0.7  Score=42.47  Aligned_cols=17  Identities=6%  Similarity=0.028  Sum_probs=16.3

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+||||+.++|+.
T Consensus        12 ~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A           12 AAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHH
Confidence            89999999999999987

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=81.29  E-value=0.69  Score=46.67  Aligned_cols=24  Identities=13%  Similarity=0.337  Sum_probs=19.2

Q ss_pred             CCCCCeEEecCcCChHHHHHHHhc
Q psy6613         144 PSPGMIIITRVTADISLAKRSLMS  167 (510)
Q Consensus       144 Ps~~RpI~GPsGvGKsTL~~rLL~  167 (510)
                      |..+-+|.||+|+|||+|.+.|..
T Consensus        83 ~~~~iLL~GppGtGKT~la~ala~  106 (355)
T 2qp9_X           83 PTSGILLYGPPGTGKSYLAKAVAT  106 (355)
T ss_dssp             CCCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCceEEEECCCCCcHHHHHHHHHH
Confidence            333445599999999999998887

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=81.29  E-value=1.1  Score=39.69  Aligned_cols=20  Identities=5%  Similarity=-0.041  Sum_probs=17.9

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus        25 ki~v~G~~~~GKSsli~~l~~   45 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYAD   45 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            444 99999999999999997

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=81.27  E-value=0.81  Score=40.42  Aligned_cols=20  Identities=5%  Similarity=0.051  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus         9 ki~v~G~~~vGKSsli~~l~~   29 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAK   29 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            344 99999999999999997

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=81.25  E-value=0.9  Score=44.83  Aligned_cols=17  Identities=6%  Similarity=-0.171  Sum_probs=16.2

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||||+|||||.+.|..
T Consensus       175 ~G~sG~GKSTll~~l~g  191 (301)
T 1u0l_A          175 AGLSGVGKSSLLNAINP  191 (301)
T ss_dssp             ECSTTSSHHHHHHHHST
T ss_pred             ECCCCCcHHHHHHHhcc
Confidence            99999999999999886

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=81.23  E-value=1  Score=44.01  Aligned_cols=19  Identities=5%  Similarity=0.132  Sum_probs=17.0

Q ss_pred             eEEecCcCChHHHHHHHhc
Q psy6613         149 IIITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~  167 (510)
                      +|.||+|+|||++.+.|..
T Consensus        53 LL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           53 LFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             EEECSSSSSHHHHHHHHHH
T ss_pred             EEECCCCcCHHHHHHHHHH
Confidence            4499999999999998887

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=80.98  E-value=0.71  Score=40.23  Aligned_cols=20  Identities=0%  Similarity=-0.072  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus        13 ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            444 99999999999999996

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=80.92  E-value=1.2  Score=45.24  Aligned_cols=17  Identities=12%  Similarity=0.128  Sum_probs=16.4

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+||||+.+.|+.
T Consensus       181 vG~sGsGKSTll~~l~~  197 (361)
T 2gza_A          181 AGETGSGKTTLMKALMQ  197 (361)
T ss_dssp             EESSSSCHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            99999999999999988

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=80.88  E-value=0.83  Score=45.62  Aligned_cols=22  Identities=9%  Similarity=0.060  Sum_probs=18.4

Q ss_pred             CCCeE--EecCcCChHHHHHHHhc
Q psy6613         146 PGMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       146 ~~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      .+.++  +||+|+||||+.+.|..
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            34565  99999999999998875

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=80.88  E-value=0.9  Score=44.22  Aligned_cols=17  Identities=6%  Similarity=-0.091  Sum_probs=15.8

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+|||||.+-|..
T Consensus        39 iG~nGsGKSTLl~~i~G   55 (266)
T 2yz2_A           39 AGNTGSGKSTLLQIVAG   55 (266)
T ss_dssp             ECSTTSSHHHHHHHHTT
T ss_pred             ECCCCCcHHHHHHHHhC
Confidence            99999999999998776

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=80.84  E-value=0.74  Score=39.18  Aligned_cols=17  Identities=6%  Similarity=-0.031  Sum_probs=16.3

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|||||||.++|+.
T Consensus        12 ~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A           12 LGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHc
Confidence            99999999999999996

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=80.81  E-value=0.98  Score=42.65  Aligned_cols=20  Identities=25%  Similarity=0.313  Sum_probs=18.0

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus        24 ~I~lvG~~g~GKStl~n~l~~   44 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAGNSILR   44 (260)
T ss_dssp             EEEEEECTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            455 99999999999999997

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.79  E-value=0.8  Score=48.36  Aligned_cols=22  Identities=14%  Similarity=0.187  Sum_probs=18.2

Q ss_pred             CCCeEEecCcCChHHHHHHHhc
Q psy6613         146 PGMIIITRVTADISLAKRSLMS  167 (510)
Q Consensus       146 ~~RpI~GPsGvGKsTL~~rLL~  167 (510)
                      +|-++.||+|+|||++.+.+..
T Consensus       216 rGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          216 KGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             CeeEEECcCCCCHHHHHHHHHH
Confidence            3344599999999999998887

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=80.46  E-value=0.76  Score=41.05  Aligned_cols=20  Identities=5%  Similarity=0.081  Sum_probs=17.6

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            344 99999999999999987

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=80.42  E-value=0.68  Score=43.61  Aligned_cols=31  Identities=23%  Similarity=0.161  Sum_probs=14.9

Q ss_pred             HHHHHHHHHhhhcCCcEEEEEEecchhhHHhhc
Q psy6613         434 MQKALFDFLKHRFEGRIIITRVTADISLAKRSL  466 (510)
Q Consensus       434 m~~al~~~l~~~f~~~i~~~~~~~d~~~~~~~~  466 (510)
                      .+..++++|++--+|..+|  ||-|+..+.+..
T Consensus       135 ~~~~l~~~l~~l~~g~tii--vtHd~~~~~~~~  165 (208)
T 3b85_A          135 TPAQMKMFLTRLGFGSKMV--VTGDITQVDLPG  165 (208)
T ss_dssp             CHHHHHHHHTTBCTTCEEE--EEEC--------
T ss_pred             cHHHHHHHHHHhcCCCEEE--EECCHHHHhCcC
Confidence            5666777776642355544  888988888754

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=80.39  E-value=0.76  Score=44.74  Aligned_cols=17  Identities=12%  Similarity=0.046  Sum_probs=16.0

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+||||+.+.|+.
T Consensus        31 ~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           31 TGPTGSGKSTTIASMID   47 (261)
T ss_dssp             ECSTTCSHHHHHHHHHH
T ss_pred             ECCCCccHHHHHHHHHH
Confidence            99999999999998876

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=80.37  E-value=0.67  Score=40.39  Aligned_cols=20  Identities=15%  Similarity=-0.039  Sum_probs=17.5

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus        20 ~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           20 RILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             EEEEEEETTSSHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            444 99999999999999986

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=80.35  E-value=0.96  Score=39.08  Aligned_cols=20  Identities=5%  Similarity=0.091  Sum_probs=17.9

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus        10 ~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A           10 VVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             EEEEESCTTTTHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            455 99999999999999987

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=80.34  E-value=0.69  Score=41.73  Aligned_cols=20  Identities=10%  Similarity=0.049  Sum_probs=17.5

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||+|.++|+.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            344 99999999999999985

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=80.32  E-value=0.81  Score=45.34  Aligned_cols=17  Identities=6%  Similarity=-0.019  Sum_probs=15.8

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+|||||.+.|..
T Consensus        37 ~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           37 SGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            89999999999998876

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=80.29  E-value=0.86  Score=41.21  Aligned_cols=20  Identities=10%  Similarity=0.022  Sum_probs=17.9

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|..
T Consensus        27 ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           27 KLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             EEEEEEETTSSHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            455 99999999999999987

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=80.29  E-value=0.95  Score=46.78  Aligned_cols=21  Identities=29%  Similarity=0.151  Sum_probs=17.8

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |.++  +||+|+|||||.+.|..
T Consensus        54 Gei~~IiGpnGaGKSTLlr~i~G   76 (366)
T 3tui_C           54 GQIYGVIGASGAGKSTLIRCVNL   76 (366)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEEcCCCchHHHHHHHHhc
Confidence            4555  99999999999988776

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=80.28  E-value=0.81  Score=39.58  Aligned_cols=17  Identities=0%  Similarity=-0.046  Sum_probs=16.4

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|||||+|.++|+.
T Consensus        12 ~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A           12 LGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             ECCTTSSHHHHHHHHHG
T ss_pred             ECcCCCCHHHHHHHHHh
Confidence            99999999999999987

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=80.23  E-value=0.94  Score=40.37  Aligned_cols=20  Identities=15%  Similarity=0.132  Sum_probs=17.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||+|.++|+.
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~   43 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLT   43 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            444 99999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	510
d1t0hb_	219	c.37.1.1 (B:) Guanylate kinase-like domain of the	4e-91
d1t0hb_	219	c.37.1.1 (B:) Guanylate kinase-like domain of the	2e-60
d1vyua1	136	b.34.2.1 (A:39-174) SH3-like domain of the L-type	6e-34
d1vyua1	136	b.34.2.1 (A:39-174) SH3-like domain of the L-type	0.001
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	1e-33
d1vyva1	145	b.34.2.1 (A:71-215) SH3-like domain of the L-type	4e-33
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	1e-10
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	3e-04
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	8e-04
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	8e-04
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	8e-04
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	8e-04
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	0.001
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	0.001
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	0.001
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	0.001
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	0.002
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	0.002

>d1t0hb_ c.37.1.1 (B:) Guanylate kinase-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 219

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  275 bits (704), Expect = 4e-91
 Identities = 130/165 (78%), Positives = 149/165 (90%), Gaps = 3/165 (1%)

Query: 146 PGMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLV 205
            G I ITRVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQLV
Sbjct: 52  EGRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLV 110

Query: 206 VLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQ 265
           VLD DTINHP+QL+KT+L+P IVY+KISSPKVLQRLIKSRGKSQ +HLNVQMVAA+KLAQ
Sbjct: 111 VLDADTINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQ 170

Query: 266 C-PQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPA-APPQPL 308
           C PQE FDVILDENQLEDACEH+A+YLEAYW+ATHPP+   P PL
Sbjct: 171 CPPQESFDVILDENQLEDACEHLADYLEAYWKATHPPSSNLPNPL 215

>d1t0hb_ c.37.1.1 (B:) Guanylate kinase-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 219

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  196 bits (499), Expect = 2e-60
 Identities = 90/109 (82%), Positives = 99/109 (90%), Gaps = 1/109 (0%)

Query: 396 KKIFFKKQETTTPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRV 455
           +  FFKK E T PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRI ITRV
Sbjct: 1   RMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRV 60

Query: 456 TADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQ 504
           TADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQ
Sbjct: 61  TADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQ 108

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  122 bits (308), Expect = 6e-34
 Identities = 65/124 (52%), Positives = 83/124 (66%), Gaps = 3/124 (2%)

Query: 25  TLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK 84
           + RRE E QA  QLE+A+ K VAFAVRTNV Y G +D++ PV G  V+F+  +FLHIKEK
Sbjct: 1   SARREVESQAQQQLERAKHKPVAFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEK 60

Query: 85  YDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQARNPKLYSSKTSSTSNLGALSSDAP 144
           Y ++WWIGRLVKEG +  FIPSP +LE++RL+Q Q       S   SS S++G   S  P
Sbjct: 61  YSNDWWIGRLVKEGGDIAFIPSPQRLESIRLKQEQKARR---SGNPSSLSDIGNRRSPPP 117

Query: 145 SPGM 148
           S   
Sbjct: 118 SLAK 121

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 356 EKERQALSQLEKARVTDDNESIGNSRAGKNTLTTPTTKEKKKIFFKKQETTTPYDVV 412
             E   L Q +KAR + +  S+ +    +   + P +  K+K   K+ E   PYDVV
Sbjct: 85  RLESIRLKQEQKARRSGNPSSLSDIGNRR---SPPPSLAKQK--QKQAEHVPPYDVV 136

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  120 bits (303), Expect = 1e-33
 Identities = 63/93 (67%), Positives = 77/93 (82%)

Query: 27  RREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYD 86
           RRE ERQA +QLEKA+ K VAFAVRTNV+Y  + +DD PV G A+SF+  +FLH+KEK++
Sbjct: 1   RREAERQAQAQLEKAKTKPVAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFN 60

Query: 87  SNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQ 119
           ++WWIGRLVKEG E GFIPSPVKLEN+RLQ  Q
Sbjct: 61  NDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQ 93

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  120 bits (302), Expect = 4e-33
 Identities = 67/122 (54%), Positives = 91/122 (74%), Gaps = 1/122 (0%)

Query: 26  LRREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY 85
           +R+E+E+QA  QLE+A++K VAFAV+TNV Y G++D+D PV   AVSFD  +FLHIKEKY
Sbjct: 2   IRQEREQQAAIQLERAKSKPVAFAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKY 61

Query: 86  DSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQ-ARNPKLYSSKTSSTSNLGALSSDAP 144
           +++WWIGRLVKEG E GFIPSP++LEN+R+QQ Q  +      S  +S+S+LG + S   
Sbjct: 62  NNDWWIGRLVKEGCEIGFIPSPLRLENIRIQQEQKRKRFHGGKSSGNSSSSLGEMVSGTF 121

Query: 145 SP 146
             
Sbjct: 122 RA 123

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.3 bits (135), Expect = 1e-10
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 7/99 (7%)

Query: 47  AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGS---ECGF 103
            F +R    YD +   D      A+SF   + LH+ +  D  WW  R V   S   + GF
Sbjct: 1   GFYIRALFDYDKT--KDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGF 58

Query: 104 IPSPVKLENLRLQQTQARNPKLYSSKTSSTSNLGALSSD 142
           IPS  ++E  R + ++ +     SS  S       LS +
Sbjct: 59  IPSKRRVE--RREWSRLKAKDWGSSSGSQGREDSVLSYE 95

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (85), Expect = 3e-04
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 8/51 (15%)

Query: 56  YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
           YD + D++       ++F  ++ +   E  D +WW+G L K+GS+ G  PS
Sbjct: 9   YDAAEDNE-------LTFVENDKIINIEFVDDDWWLGELEKDGSK-GLFPS 51

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.4 bits (82), Expect = 8e-04
 Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 10/51 (19%)

Query: 56  YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
           Y      +       V+    + L +    + +WW   +       GF+P+
Sbjct: 9   YQEKSPRE-------VTMKKGDILTLLNSTNKDWWKVEV---NDRQGFVPA 49

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (83), Expect = 8e-04
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 9/57 (15%)

Query: 50  VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
           V+    Y    +D+       ++F     +   EK +  WW G     G +  + PS
Sbjct: 9   VKALFDYKAQREDE-------LTFIKSAIIQNVEKQEGGWWRGDY--GGKKQLWFPS 56

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (82), Expect = 8e-04
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 10/57 (17%)

Query: 50  VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
           V+    +D   D +       + F   +F+H+ +  D NWW G       + G  P 
Sbjct: 4   VQALFDFDPQEDGE-------LGFRRGDFIHVMDNSDPNWWKGAC---HGQTGMFPR 50

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.4 bits (82), Expect = 8e-04
 Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 10/51 (19%)

Query: 56  YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
           ++   +D+       + F   E + + +  + +WW GRL    ++ G  P+
Sbjct: 10  FEALEEDE-------LGFRSGEVVEVLDSSNPSWWTGRL---HNKLGLFPA 50

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.0 bits (81), Expect = 0.001
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 10/61 (16%)

Query: 46  VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIP 105
           +A  VR    ++   D++       ++F   E + + +  D+NWW G         G  P
Sbjct: 1   MARRVRALYDFEAVEDNE-------LTFKHGELITVLDDSDANWWQGEN---HRGTGLFP 50

Query: 106 S 106
           S
Sbjct: 51  S 51

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 35.0 bits (81), Expect = 0.001
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 10/57 (17%)

Query: 50  VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
           V+    ++     +       ++F   + + +  K D NWW G+L    +  G  PS
Sbjct: 5   VQALFDFNPQESGE-------LAFKRGDVITLINKDDPNWWEGQL---NNRRGIFPS 51

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 0.001
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 8/51 (15%)

Query: 56  YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
           Y  +  D+       VSF   + +   +  D  W  G + + G   G +P+
Sbjct: 12  YMAADADE-------VSFKDGDAIINVQAIDEGWMYGTVQRTGRT-GMLPA 54

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 0.001
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 8/51 (15%)

Query: 56  YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
           Y+   +DD       +SF   E   I    + +WW  R +  G   G+IPS
Sbjct: 9   YEAITEDD-------LSFHKGEKFQILNSSEGDWWEARSLTTGET-GYIPS 51

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.7 bits (80), Expect = 0.002
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 9/57 (15%)

Query: 50  VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
           VR    ++G+ ++D       + F   + L I++K +  WW     +   + G IP 
Sbjct: 4   VRALFDFNGNDEED-------LPFKKGDILRIRDKPEEQWWNAEDSE--GKRGMIPV 51

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 8/51 (15%)

Query: 56  YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
           Y+   + D       +SF   E L I    + +WW+   +  G   G+IPS
Sbjct: 11  YESRTETD-------LSFKKGERLQIVNNTEGDWWLAHSLSTGQT-GYIPS 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	510
d1t0hb_	219	Guanylate kinase-like domain of the L-type calcium	100.0
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	99.96
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	99.95
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	99.95
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	99.95
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	99.94
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	99.94
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	99.93
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.93
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	99.92
d1t0hb_	219	Guanylate kinase-like domain of the L-type calcium	99.9
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.66
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.29
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.28
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.22
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.21
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.2
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.19
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.19
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.18
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.16
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.1
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.1
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.07
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.06
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.06
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.05
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.04
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.04
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.04
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.03
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.03
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.02
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.02
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	98.99
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	98.99
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	98.98
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	98.98
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.97
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	98.96
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	98.95
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	98.95
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	98.94
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	98.93
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	98.93
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	98.91
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	98.9
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	98.89
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	98.88
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	98.88
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	98.87
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	98.87
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	98.85
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	98.8
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	98.78
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	98.77
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	98.71
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.52
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	98.5
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.33
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.23
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.22
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.18
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.15
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.11
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.92
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	97.88
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.8
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.78
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.72
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.68
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.66
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.58
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.56
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.54
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.5
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.47
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.4
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.39
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.34
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.34
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.22
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.16
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.13
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.09
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.04
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.9
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.89
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.84
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.72
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.7
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.66
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.43
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.2
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.12
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.98
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.79
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.49
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	95.28
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.54
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	94.38
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	94.04
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	93.6
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	92.9
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	92.89
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	92.7
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	92.02
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	91.79
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	91.58
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	91.31
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	90.94
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	90.8
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	90.49
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	89.99
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	89.96
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	89.8
d1nrjb_	209	Signal recognition particle receptor beta-subunit	89.59
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	89.53
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	88.46
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	88.42
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	88.01
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	87.38
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	87.33
d2awna2	232	Maltose transport protein MalK, N-terminal domain	87.28
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	87.24
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	87.13
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	87.1
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	87.09
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	87.02
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	86.85
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	86.82
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	86.68
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	86.54
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	86.48
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	86.47
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	86.4
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	86.34
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	86.31
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	86.23
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	86.16
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	86.01
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	85.94
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	85.89
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	85.81
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	85.65
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	85.62
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	85.6
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	85.57
d1g2912	240	Maltose transport protein MalK, N-terminal domain	85.53
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	85.51
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	85.48
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	85.39
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	85.31
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	85.21
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	85.21
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	85.19
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	85.02
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	84.94
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	84.9
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	84.85
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	84.57
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	84.45
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	84.38
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	84.36
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	84.34
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	84.33
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	84.32
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	84.29
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	84.28
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	84.24
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	84.19
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	84.13
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	84.06
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	83.97
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	83.95
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	83.88
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	83.74
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	83.74
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	83.74
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	83.7
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	83.67
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	83.63
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	83.49
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	83.39
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	83.23
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	83.15
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	83.13
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	83.05
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	82.89
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	82.82
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	82.81
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	82.51
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	82.39
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	82.36
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	82.36
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	82.14
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	82.07
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	81.99
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	81.78
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	81.77
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	81.76
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	81.75
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	81.24
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	80.74
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	80.73
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	80.7
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	80.66
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	80.62
d2fh5b1	207	Signal recognition particle receptor beta-subunit	80.42
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	80.38
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	80.37

>d1t0hb_ c.37.1.1 (B:) Guanylate kinase-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=2.8e-57  Score=424.82  Aligned_cols=111  Identities=81%  Similarity=1.165  Sum_probs=93.1

Q ss_pred             hhhcccccCCCCCccccCCCcceEEeCCCCCCchhHHHHHHHHHHHHhhhcCCcEEEEEEecchhhHHhhccCCcccccc
Q psy6613         396 KKIFFKKQETTTPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSLMSNPSKRAI  475 (510)
Q Consensus       396 ~~~~~~~~~~~~~y~~~p~~rp~~~~gp~~~~~~~~~~m~~al~~~l~~~f~~~i~~~~~~~d~~~~~~~~~~~~~~~~~  475 (510)
                      |||||||+|++||||||||||||||||||||||||||||||||||||||||+|||+|||||||||+||||++|||+|+++
T Consensus         1 r~pffkk~~~~~PYdVVPsmRPvvlvGPsLkGyevTDMMqkALfD~Lk~rF~grI~itrv~aDIslakrs~~~n~~k~~~   80 (219)
T d1t0hb_           1 RMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAI   80 (219)
T ss_dssp             CCCC------CCSEEEECSSCCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGCC----------CC
T ss_pred             CCccccccCCCCCcccccCCCceEEECCCcccccHHHHHHHHHHHHHHHhcCCceEEEEEecchhHhhhccccCchhhhh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcchhHHHHHHHHHHHHHhhcccccc
Q psy6613         476 MERSNSRSSVLTEVQTEIERVYELASTLQVYY  507 (510)
Q Consensus       476 ~~~~~~~~~~~~~~~~e~~~i~~~~~~~~l~~  507 (510)
                      ++|+++|++ ++|||+||||||||||+||||+
T Consensus        81 ~~rs~~r~~-~~eVq~eIErIfelar~lqLvv  111 (219)
T d1t0hb_          81 IERSNTRSS-LAEVQSEIERIFELARTLQLVV  111 (219)
T ss_dssp             CCCCSSSSC-HHHHHHHHHHHHHHHTTCCEEE
T ss_pred             hhcccccch-HHHHHHHHHHHHHHhhcccEEE
Confidence            999999987 9999999999999999999985

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=6.8e-30  Score=242.07  Aligned_cols=142  Identities=16%  Similarity=0.227  Sum_probs=127.2

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-CCC-CceeeecCCCchh-----------------hhhhhc----------------
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-NPS-KRAIMERSNSRSS-----------------VLTEVQ----------------  189 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~P~-~F~~sVshTTR~p-----------------Fe~~I~----------------  189 (510)
                      |++|  +|||||||+||+++|++ +|. .|.++||||||+|                 |++++.                
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~YG   81 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYG   81 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHHhhhhhheeEEEECCceec
Confidence            5665  89999999999999999 885 6999999999998                 555442                


Q ss_pred             ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcC
Q psy6613         190 TEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCP  267 (510)
Q Consensus       190 TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~  267 (510)
                      |++++|..++.+|++||||+|++|  +..++. ...+++|||.|||.++|++||+.||.++.+.+.+|+ .+..++... 
T Consensus        82 t~~~~v~~~~~~g~~~ildid~~g--~~~lk~~~~~~~~ifi~pps~~~l~~RL~~Rg~~~~~~i~~Rl~~a~~E~~~~-  158 (205)
T d1s96a_          82 TSREAIEQVLATGVDVFLDIDWQG--AQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHY-  158 (205)
T ss_dssp             EEHHHHHHHHTTTCEEEEECCHHH--HHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHTTG-
T ss_pred             cccchHHHHHhcCCceeecCcHHH--HHHHHhhhcccceeeeeccchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH-
Confidence            999999999999999999999999  888877 788999999999999999999999999999999999 666666554 


Q ss_pred             CCCccEEEeCCCHHHHHHHHHHHHH
Q psy6613         268 QEMFDVILDENQLEDACEHIAEYLE  292 (510)
Q Consensus       268 ~~~FD~VIvNDdLd~A~~eL~~ile  292 (510)
                       +.||+||+|||++.|+++|.++|.
T Consensus       159 -~~fD~vIvNddl~~a~~el~~iI~  182 (205)
T d1s96a_         159 -AEYDYLIVNDDFDTALTDLKTIIR  182 (205)
T ss_dssp             -GGSSEEEECSSHHHHHHHHHHHHH
T ss_pred             -hCCCEEEECcCHHHHHHHHHHHHH
Confidence             789999999999999999997774

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.8e-28  Score=226.33  Aligned_cols=139  Identities=16%  Similarity=0.289  Sum_probs=127.1

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc----------------ccHHHHH
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ----------------TEIERVY  196 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~----------------TslesI~  196 (510)
                      +|||||||+||+++|++ +|+.|.++++||||+|                 |+.++.                |+++.|.
T Consensus         7 ~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~~~~i~   86 (186)
T d1gkya_           7 SGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVK   86 (186)
T ss_dssp             ECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecchhhHH
Confidence            99999999999999999 9999999999999998                 333322                8999999


Q ss_pred             HHHHcCCeEEEEeccCCchhHhhhc--CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccE
Q psy6613         197 ELASTLQLVVLDCDTINHPSQLAKT--NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDV  273 (510)
Q Consensus       197 ~vi~sGKi~ILDID~qg~~lq~lks--~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~  273 (510)
                      .++.+|++||+|++++|  +..++.  .+.+++||+.|||.++|++||++||.++.+.+.+|| .+..++...+.+.||+
T Consensus        87 ~~~~~g~~~i~~~~~~~--~~~lk~~~~~~~~~i~~~~~~~e~l~~RL~~Rg~~~~~~I~~Rl~~~~~e~~~~~~~~fd~  164 (186)
T d1gkya_          87 QVSKSGKTCILDIDMQG--VKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDK  164 (186)
T ss_dssp             HHHHHTSEEEEECCHHH--HHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHTTTCSSE
T ss_pred             HHhcCCCeEEecchHHH--HHHHHHhhcccceEEEecCCcHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhcCCCE
Confidence            99999999999999999  888887  578999999999999999999999999999999999 7677888777899999


Q ss_pred             EEeCCCHHHHHHHHHHHH
Q psy6613         274 ILDENQLEDACEHIAEYL  291 (510)
Q Consensus       274 VIvNDdLd~A~~eL~~il  291 (510)
                      ||+|+|++.|+++|.++|
T Consensus       165 vI~N~dle~a~~~l~~iI  182 (186)
T d1gkya_         165 VIVNDDLDKAYKELKDFI  182 (186)
T ss_dssp             EEECSSHHHHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHH
Confidence            999999999999999655

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=2.7e-28  Score=229.77  Aligned_cols=153  Identities=19%  Similarity=0.216  Sum_probs=129.9

Q ss_pred             CCCCCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh------------------hhhhhc-------------
Q psy6613         144 PSPGMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS------------------VLTEVQ-------------  189 (510)
Q Consensus       144 Ps~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p------------------Fe~~I~-------------  189 (510)
                      +.+.|||  +||   ||+|++++|++ +|+.|.++++||||+|                  |+++++             
T Consensus         6 ~~~~Rpivi~Gp---~K~ti~~~L~~~~p~~f~~~is~TTR~~R~~E~dG~dY~Fv~~~e~F~~~i~~~~fiE~~~~~g~   82 (199)
T d1kjwa2           6 VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSH   82 (199)
T ss_dssp             CCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTE
T ss_pred             CCCCCCEEEECc---CHHHHHHHHHHhCccceeecccccccCCCCCCCCCcccchhhhHHHHHHHHhhccceeeeeecCC
Confidence            3456776  887   59999999999 9999999999999998                  444432             


Q ss_pred             ---ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q psy6613         190 ---TEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQ  265 (510)
Q Consensus       190 ---TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq  265 (510)
                         |++++|..++++|++||||+|++|  +..++. .+.|++|||.|||.+.+++ +++|+  +++++.+++..+.++++
T Consensus        83 ~YGt~~~~i~~~~~~gk~~lldid~~g--~~~lk~~~~~~i~IfI~pps~e~l~~-l~kr~--~~~~i~~r~~~~~~~e~  157 (199)
T d1kjwa2          83 LYGTSVQSVREVAEQGKHCILDVSANA--VRRLQAAHLHPIAIFIRPRSLENVLE-INKRI--TEEQARKAFDRATKLEQ  157 (199)
T ss_dssp             EEEEEHHHHHHHHHTTCEEEECCCTTH--HHHHHHTTCCCEEEEECCSSHHHHHH-HCTTS--CHHHHHHHHHHHHHHHH
T ss_pred             ccceeeeEEEehhcCCCcccccccchH--HhhhhhhccceeEEeeccccHHHHHh-hhccc--cHHHHHHHHHHHHHHHH
Confidence               999999999999999999999999  777776 7899999999999999875 44444  45677777766777777


Q ss_pred             cCCCCccEEEeCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy6613         266 CPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAPPQP  307 (510)
Q Consensus       266 ~~~~~FD~VIvNDdLd~A~~eL~~ileai~~a~h~p~~~p~~  307 (510)
                      .+.+.||+||+|||++.|+++|.   +.|...+..|+|+|.-
T Consensus       158 ~~~~~fd~vI~Nddle~a~~~l~---~iI~~~~~~~~WvP~~  196 (199)
T d1kjwa2         158 EFTECFSAIVEGDSFEEIYHKVK---RVIEDLSGPYIWVPAR  196 (199)
T ss_dssp             HHGGGCSEEECCSSHHHHHHHHH---HHHHHHSCSEEEEECS
T ss_pred             HhhccCCEEEECcCHHHHHHHHH---HHHHHhcCCCeeecCc
Confidence            77899999999999999999999   4556788999999974

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.95  E-value=1.3e-27  Score=218.50  Aligned_cols=140  Identities=22%  Similarity=0.259  Sum_probs=122.9

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc-----------------
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ-----------------  189 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~-----------------  189 (510)
                      |++|  +|||||||+||+++|++ +| .|.++++||||+|                 |++++.                 
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~-~~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~~   80 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP-NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRS   80 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST-TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC-CCeEEEEeeccCCCccccCCcceeeccchhhhhhhcccccchhhhcccCcccc
Confidence            5665  89999999999999999 88 5999999999998                 332221                 


Q ss_pred             -ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhc
Q psy6613         190 -TEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQC  266 (510)
Q Consensus       190 -TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~  266 (510)
                       |+..++..++..|++|++|++++|  +..++. .+.|++|||.|||.++|++||..||.++.+.+.+|| .+..++.  
T Consensus        81 g~~~~~~~~~~~~g~~~i~~~~~~g--~~~l~~~~~~~~~i~i~~~s~e~L~~RL~~Rg~~~~e~I~~Rl~~~~~e~~--  156 (182)
T d1znwa1          81 GTLAQPVRAAAATGVPVLIEVDLAG--ARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELA--  156 (182)
T ss_dssp             EEEHHHHHHHHHHTCCEEEECCHHH--HHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHH--
T ss_pred             ccccchhhhhhhcCCccccccccch--hhhhhhcCcceeEEeeecccHHHHHHHhhhcCcchHHHHHHHHHHHHHHHh--
Confidence             899999999999999999999999  888887 789999999999999999999999999999999999 4444444  


Q ss_pred             CCCCccEEEeCCCHHHHHHHHHHHH
Q psy6613         267 PQEMFDVILDENQLEDACEHIAEYL  291 (510)
Q Consensus       267 ~~~~FD~VIvNDdLd~A~~eL~~il  291 (510)
                      +.+.||+||+|||+++|+++|.++|
T Consensus       157 ~~~~fD~vI~Nddle~a~~~l~~iI  181 (182)
T d1znwa1         157 AQGDFDKVVVNRRLESACAELVSLL  181 (182)
T ss_dssp             GGGGSSEEEECSSHHHHHHHHHHHH
T ss_pred             hHhcCCEEEECcCHHHHHHHHHHHh
Confidence            4489999999999999999999765

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=3.7e-27  Score=218.78  Aligned_cols=144  Identities=18%  Similarity=0.270  Sum_probs=129.3

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc----------------ccHHHHH
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ----------------TEIERVY  196 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~----------------TslesI~  196 (510)
                      +||||+||+||+++|++ +|..|..+++||||+|                 |++++.                |+.++|.
T Consensus         6 ~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~~~e~~~~~~~~Yg~~~~~v~   85 (190)
T d1lvga_           6 SGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSKEAVR   85 (190)
T ss_dssp             ECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEEHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCccCceeEEeehhHHHHHhhhhhheeeeEEcCcceecccchhh
Confidence            99999999999999999 9999999999999998                 443332                8999999


Q ss_pred             HHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHH-hcCCCCccE
Q psy6613         197 ELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLA-QCPQEMFDV  273 (510)
Q Consensus       197 ~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLE-q~~~~~FD~  273 (510)
                      +++..|++|++++++.+  +..++. .+.|++|||.|||.++|++||+.||.++.+.+.+|| .+..+|. ..+.+.||+
T Consensus        86 ~~~~~g~~~~~~~~~~~--~~~l~~~~~~~~~I~i~~~~~e~l~~RL~~R~~~~~e~i~~rl~~~~~~~~~~~~~~~fd~  163 (190)
T d1lvga_          86 AVQAMNRICVLDVDLQG--VRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDL  163 (190)
T ss_dssp             HHHHTTCEEEEECCHHH--HHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGGGSTTTCSE
T ss_pred             hhhcCCCceeecchHhh--hhhhhhccccceEEEEecchHHHHHHHHhhccccchHHHHHHHHHHHHHHHhhhhcCCCCE
Confidence            99999999999999998  888877 789999999999999999999999999999999999 6666665 456788999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHH
Q psy6613         274 ILDENQLEDACEHIAEYLEAYWR  296 (510)
Q Consensus       274 VIvNDdLd~A~~eL~~ileai~~  296 (510)
                      ||+|+|+|.|+++|..+|...+.
T Consensus       164 iI~N~dle~a~~~l~~iI~~~~~  186 (190)
T d1lvga_         164 VIINDDLDKAYATLKQALSEEIK  186 (190)
T ss_dssp             EEECSSHHHHHHHHHHHTHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh
Confidence            99999999999999988876553

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.9e-27  Score=216.59  Aligned_cols=137  Identities=15%  Similarity=0.305  Sum_probs=116.2

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc----------------c
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ----------------T  190 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~----------------T  190 (510)
                      +|||  +||||+||+||+++|++ +|+.|.++++||||+|                 |++++.                |
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~~G~dY~Fvs~~~F~~~~~~g~fie~~~~~g~~YGt   82 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGT   82 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCccccCccceeeehhhhhhheecCceEEEeeecccceee
Confidence            4555  99999999999999998 9999999999999998                 444332                9


Q ss_pred             cHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCC
Q psy6613         191 EIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQ  268 (510)
Q Consensus       191 slesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~  268 (510)
                      ++++|.+++++|++||||+|++|  ++.++. .+.|++|||.||+++.        +.+. ++..+|+ .++.+++..+.
T Consensus        83 ~~~~i~~~~~~g~~~ildid~~g--~~~lk~~~~~~~~IfI~pps~~~--------~~~~-~~~~~r~~~~~~~~e~~~~  151 (178)
T d1kgda_          83 KLETIRKIHEQGLIAILDVEPQA--LKVLRTAEFAPFVVFIAAPTITP--------GLNE-DESLQRLQKESDILQRTYA  151 (178)
T ss_dssp             EHHHHHHHHHTTCEEEEECCGGG--HHHHSSTTTCEEEEEEECCSCCT--------TSCC-SHHHHHHHHHHHHHHHHHG
T ss_pred             eeecccchhccCceEEeccchhh--hhhhhccccccceeeEecccccc--------ccch-HHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999  888887 7899999999999642        2232 3445677 67777887777


Q ss_pred             CCccEEEeCCCHHHHHHHHHHHHHHH
Q psy6613         269 EMFDVILDENQLEDACEHIAEYLEAY  294 (510)
Q Consensus       269 ~~FD~VIvNDdLd~A~~eL~~ileai  294 (510)
                      |+||++|+|||+|+|+++|+++|+.+
T Consensus       152 ~~fD~vIvNddle~a~~el~~iI~~~  177 (178)
T d1kgda_         152 HYFDLTIINNEIDETIRHLEEAVELV  177 (178)
T ss_dssp             GGCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999888653

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=5.1e-27  Score=210.98  Aligned_cols=93  Identities=60%  Similarity=1.039  Sum_probs=88.1

Q ss_pred             HhHHHHHHHHHHHhhhccCCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeec
Q psy6613          26 LRREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIP  105 (510)
Q Consensus        26 ~~~~~~~~a~~~L~~a~~k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIP  105 (510)
                      .|+|+|++|+.+|++|+.||+.|+|||+|||+|..|+++||++.+|+|++||||+|++++|++||+||++++++..||||
T Consensus         2 ~~~~~~~~a~~~l~~a~~kp~~~~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iP   81 (136)
T d1vyua1           2 ARREVESQAQQQLERAKHKPVAFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIP   81 (136)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCCEEEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESSTTCCCEEEE
T ss_pred             chhHHHHHHHHHHhhccCCCceEEEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccCCCceeccC
Confidence            58899999999999999999999999999999999999999999999999999999999999999999998888999999


Q ss_pred             ChhHHHHHHHHhh
Q psy6613         106 SPVKLENLRLQQT  118 (510)
Q Consensus       106 S~~~~Errr~~~~  118 (510)
                      |+.++|.++.+..
T Consensus        82 s~~~lE~~r~~~~   94 (136)
T d1vyua1          82 SPQRLESIRLKQE   94 (136)
T ss_dssp             CHHHHHHHHHHHT
T ss_pred             chHHHhhhhhhhc
Confidence            9999988876544

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.93  E-value=3.3e-26  Score=194.45  Aligned_cols=93  Identities=68%  Similarity=1.133  Sum_probs=88.1

Q ss_pred             hHHHHHHHHHHHhhhccCCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecC
Q psy6613          27 RREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS  106 (510)
Q Consensus        27 ~~~~~~~a~~~L~~a~~k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS  106 (510)
                      |+|+|++|+.+|++++.+++.++|||+|||+|..|+++||++.+|+|++||||+|+++.|++||+|++++++++.|||||
T Consensus         1 r~e~e~qa~~~l~~~~~~p~~~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS   80 (96)
T d1t0ha_           1 RREAERQAQAQLEKAKTKPVAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPS   80 (96)
T ss_dssp             CTHHHHHHHHHHHHHTTSCCCEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEEC
T ss_pred             CcchhhhhhhhccccCCCCccEEEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999988889999999


Q ss_pred             hhHHHHHHHHhhh
Q psy6613         107 PVKLENLRLQQTQ  119 (510)
Q Consensus       107 ~~~~Errr~~~~~  119 (510)
                      +.+.|.++.+.++
T Consensus        81 ~~~~e~~~~~~eq   93 (96)
T d1t0ha_          81 PVKLENMRLQHEQ   93 (96)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cHHHHHHhhhhhh
Confidence            9999988777665

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=2.3e-25  Score=201.39  Aligned_cols=94  Identities=64%  Similarity=1.099  Sum_probs=88.2

Q ss_pred             HHhHHHHHHHHHHHhhhccCCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeee
Q psy6613          25 TLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFI  104 (510)
Q Consensus        25 ~~~~~~~~~a~~~L~~a~~k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlI  104 (510)
                      +||++.|++|+.||++++.+++.|+|||||||+|..|+++||++.+|+|++||||+|+++.|++||+||+++++|..|||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~f~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~i   80 (145)
T d1vyva1           1 AIRQEREQQAAIQLERAKSKPVAFAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFI   80 (145)
T ss_dssp             CHHHHHHHHHHHHHHHHHTSCCCEEEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEE
T ss_pred             CchhHHHHHHHHhhhhcCCCCccEEEEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEe
Confidence            47899999999999999999999999999999999999999999999999999999999999999999998878899999


Q ss_pred             cChhHHHHHHHHhh
Q psy6613         105 PSPVKLENLRLQQT  118 (510)
Q Consensus       105 PS~~~~Errr~~~~  118 (510)
                      ||+.++|..+....
T Consensus        81 PS~~~~e~~~~~~~   94 (145)
T d1vyva1          81 PSPLRLENIRIQQE   94 (145)
T ss_dssp             ECHHHHHHHHHTTT
T ss_pred             CCchhhhccccccc
Confidence            99999987766433

>d1t0hb_ c.37.1.1 (B:) Guanylate kinase-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.90  E-value=2.8e-24  Score=200.83  Aligned_cols=160  Identities=79%  Similarity=1.150  Sum_probs=126.0

Q ss_pred             CCCeEEecCcCChHHHHHHHhcCCCCceeeecCCCchhhhhhhcccHHHHHHHHHcCCeEEEEeccCCchhHhhhcCCCc
Q psy6613         146 PGMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSP  225 (510)
Q Consensus       146 ~~RpI~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~pFe~~I~TslesI~~vi~sGKi~ILDID~qg~~lq~lks~l~P  225 (510)
                      .|||++....++.++.++..+++|.+.......+||.. .++++.++|.|++++++++.||||+|..+||.++.|+.|.|
T Consensus        52 ~grI~itrv~aDIslakrs~~~n~~k~~~~~rs~~r~~-~~eVq~eIErIfelar~lqLvvLD~dtInhP~ql~ktsLaP  130 (219)
T d1t0hb_          52 EGRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAP  130 (219)
T ss_dssp             TTSEEEEEECSCGGGCC----------CCCCCCSSSSC-HHHHHHHHHHHHHHHTTCCEEEEEETTCCSGGGTTTSSCCC
T ss_pred             CCceEEEEEecchhHhhhccccCchhhhhhhcccccch-HHHHHHHHHHHHHHhhcccEEEeccCccCCHHHhcccCCcc
Confidence            45666665666666666666666666666666677765 66788999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCC-CCccEEEeCCCHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy6613         226 CIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQ-EMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAP  304 (510)
Q Consensus       226 ivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~-~~FD~VIvNDdLd~A~~eL~~ileai~~a~h~p~~~  304 (510)
                      |+|||+..|.++|.+++++||+.+.++++.+|.+++++.||.+ ..||+||..+.|++||++|.+|+|+||+++|+|...
T Consensus       131 Iivyikiss~kVLqrLIKsrGksq~k~~nvq~vaa~kl~Qc~p~e~fD~iLden~Le~Acehla~yLE~Yw~a~Hp~~~~  210 (219)
T d1t0hb_         131 IIVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPQESFDVILDENQLEDACEHLADYLEAYWKATHPPSSN  210 (219)
T ss_dssp             EEEEECCSCHHHHHHHHHHC------CHHHHHHHHHHHHTSCHHHHCSEEECCSSHHHHHHHHHHHHHHHHHHHSCC---
T ss_pred             eEEEEEeCcHHHHHHHHHhcChhhhhcccHHHHHHHHHhccCchhccceeecccchHHHHHHHHHHHHHHHhccCCCCCC
Confidence            9999999999999999999999999999999999999999975 799999999999999999999999999999999887


Q ss_pred             CC
Q psy6613         305 PQ  306 (510)
Q Consensus       305 p~  306 (510)
                      |+
T Consensus       211 ~~  212 (219)
T d1t0hb_         211 LP  212 (219)
T ss_dssp             --
T ss_pred             CC
Confidence            66

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=2e-17  Score=138.64  Aligned_cols=67  Identities=31%  Similarity=0.557  Sum_probs=57.7

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccC---CCceeeecChhHHHHHHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKE---GSECGFIPSPVKLENLRL  115 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~---~~~~GlIPS~~~~Errr~  115 (510)
                      .|||||||||+|..|+.+||  .+|+|++||||+|+++.|++||+|+.+++   .|+.||||++.++|.+..
T Consensus         1 ~~~vrAlydy~~~~d~~~~~--~eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e~~~~   70 (96)
T d1kjwa1           1 GFYIRALFDYDKTKDCGFLS--QALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREW   70 (96)
T ss_dssp             CEEEEESSCBCHHHHHCCCS--SBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHHHHH
T ss_pred             CEEEEEcccCcCCcCCCCCC--ccceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceeeehhh
Confidence            38999999999998875555  46999999999999999999999998753   358999999999986643

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=6.7e-13  Score=101.37  Aligned_cols=53  Identities=25%  Similarity=0.559  Sum_probs=47.1

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ||||+|||.+..++       .|+|++||+|.|+++.|++||+|+..  +|+.|+||++..+
T Consensus         3 ~v~Alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~~--~g~~G~vP~~yve   55 (57)
T d1ckaa_           3 YVRALFDFNGNDEE-------DLPFKKGDILRIRDKPEEQWWNAEDS--EGKRGMIPVPYVE   55 (57)
T ss_dssp             EEEESSCBCCSSTT-------BCCBCTTCEEEEEECSSSSEEEEECT--TSCEEEEEGGGEE
T ss_pred             EEEECCCCCcCCcC-------CcCCCCCCEEEEEEEcCCCeEEEEEC--CCCEEEEcHHHeE
Confidence            79999999999875       59999999999999999999999863  4689999998654

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.8e-12  Score=98.56  Aligned_cols=53  Identities=25%  Similarity=0.567  Sum_probs=47.3

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      +.||||+|||.+..++       +|+|++||+|.|+++.+++||.|+.   +|+.|+||+...
T Consensus         1 styv~Alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv   53 (56)
T d1gcqa_           1 STYVQALFDFDPQEDG-------ELGFRRGDFIHVMDNSDPNWWKGAC---HGQTGMFPRNYV   53 (56)
T ss_dssp             CEEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             CEEEEECcCCCcCCcC-------CcCCCCCCEEEEEEecCCCEEEEEE---CCeEEEEEHhHE
Confidence            3589999999998875       5999999999999999999999997   579999999754

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=5.3e-12  Score=96.37  Aligned_cols=51  Identities=22%  Similarity=0.543  Sum_probs=46.2

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      |+||+|||.++.++       +|+|++||+|.|++..|++||.|+.   +|+.|+||++..
T Consensus         3 yarAlydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   53 (57)
T d1utia_           3 WARALYDFEALEED-------ELGFRSGEVVEVLDSSNPSWWTGRL---HNKLGLFPANYV   53 (57)
T ss_dssp             EEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEECcCCCCCCcC-------CcCCCCCCEEEEeEEcCCCEEEEEE---CCcEEEEEHHHE
Confidence            79999999998875       5999999999999999999999997   579999999754

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.21  E-value=7.1e-12  Score=95.98  Aligned_cols=52  Identities=23%  Similarity=0.489  Sum_probs=46.7

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .++||+|||.+..++       +|+|++||+|+|++..+++||.|+.   +++.|+||+...
T Consensus         3 ~~~~Alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv   54 (58)
T d1sema_           3 KFVQALFDFNPQESG-------ELAFKRGDVITLINKDDPNWWEGQL---NNRRGIFPSNYV   54 (58)
T ss_dssp             CEEEESSCBCCSSTT-------BCCBCTTCEEEEEECSSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEECCCCCcCCcC-------CcCCCCCCEEEEeEEcCCCEEEEEE---CCeEEEEEhhhE
Confidence            489999999998865       6999999999999999999999997   579999998754

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.20  E-value=2.7e-12  Score=96.63  Aligned_cols=51  Identities=16%  Similarity=0.299  Sum_probs=45.2

Q ss_pred             EEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        50 VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      |+|+|||.+..++       +|+|++||+|.|+++.|++||.++.  .+|+.|+||++..
T Consensus         1 V~Alydy~a~~~~-------eLs~~~Gd~~~vl~~~~~~Ww~~~~--~~g~~G~vP~~yv   51 (53)
T d2rn8a1           1 VIALYDYQTNDPQ-------ELALRCDEEYYLLDSSEIHWWRVQD--KNGHEGYAPSSYL   51 (53)
T ss_dssp             EEESSCCCCSSTT-------BCCCCTTCEEEECCCSCSSCEEEEC--TTSCEEEECGGGE
T ss_pred             CEEeeeECCCCCC-------eeeECCCCEEEEeEEcCCCeEEEEe--CCCCEEEEeHHHE
Confidence            6899999999875       5999999999999999999999986  3568999999864

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.2e-12  Score=98.42  Aligned_cols=54  Identities=15%  Similarity=0.339  Sum_probs=47.6

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ...|||+|+|.+..++       +|+|++||+|.|++..+++||.|+.   +|+.|+||+...+
T Consensus         5 g~~v~Aly~y~a~~~~-------eLsf~~Gd~i~vl~~~~~~Ww~g~~---~g~~G~~P~~yVe   58 (62)
T d1k4us_           5 GSQVEALFSYEATQPE-------DLEFQEGDIILVLSKVNEEWLEGES---KGKVGIFPKVFVE   58 (62)
T ss_dssp             CEEEECCSCBCCCSSS-------BCCBCSSCEEEEEEESSSSCEEEEC---SSCEEEECGGGCC
T ss_pred             CCEEEECCCCCCCCcC-------CcCCCCCCEEEEeEEcCCCEEEEEE---CCcEEEEchHHeE
Confidence            4478999999998875       5999999999999999999999986   5789999998754

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=8.7e-12  Score=95.17  Aligned_cols=52  Identities=27%  Similarity=0.526  Sum_probs=46.7

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChh
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPV  108 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~  108 (510)
                      ++||+|||.+..++       +|+|++||+|+|+++.+++||.|++.+ .++.|+||+..
T Consensus         2 ~~~Alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~~~-~g~~G~~P~~y   53 (58)
T d1jo8a_           2 WATAEYDYDAAEDN-------ELTFVENDKIINIEFVDDDWWLGELEK-DGSKGLFPSNY   53 (58)
T ss_dssp             CEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEETT-TCCEEEEEGGG
T ss_pred             EEEEccCCCCCCcC-------CcCCCCCCEEEEEEEcCCCEEEEEECC-CCCEEEEchHH
Confidence            68999999999875       599999999999999999999999854 46899999875

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.18  E-value=1.2e-11  Score=93.58  Aligned_cols=51  Identities=18%  Similarity=0.422  Sum_probs=45.7

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      +++|+|||.++.++       +|+|++||++.|+++.+++||.|++   +|+.|+||++..
T Consensus         2 ~~vAl~dy~~~~~~-------eLs~~~Gd~v~v~~~~~~~Ww~g~~---~g~~G~~P~~yv   52 (55)
T d1u06a1           2 LVLALYDYQEKSPR-------EVTMKKGDILTLLNSTNKDWWKVEV---NDRQGFVPAAYV   52 (55)
T ss_dssp             EEEECSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEECCCCCCCCcC-------CccCCCCCEEEEeEEcCCCEEEEEE---CCeEEEEeHHHE
Confidence            47899999999875       5999999999999999999999997   578999999764

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=2e-11  Score=93.38  Aligned_cols=52  Identities=25%  Similarity=0.542  Sum_probs=46.3

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      -.+||+|||.+..++       +|+|++||+|.|+++.+++||.|++   +|..|+||+..-
T Consensus         3 rr~~Alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yV   54 (58)
T d1uj0a_           3 RRVRALYDFEAVEDN-------ELTFKHGELITVLDDSDANWWQGEN---HRGTGLFPSNFV   54 (58)
T ss_dssp             EEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred             CEEEECCCCCCCCcC-------CcCCCCCCEEEEeEEeCCCEEEEEE---CCeEEEEehHhE
Confidence            368999999998765       5999999999999999999999997   478999999763

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.8e-11  Score=97.13  Aligned_cols=55  Identities=18%  Similarity=0.449  Sum_probs=48.7

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ..+.|||+|||++..++       +|+|++||+|.|+++.+++||.+++   +++.|+||+....
T Consensus         9 ~~~~~rAlydy~a~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv~   63 (76)
T d1ujya_           9 HQLIVKARFNFKQTNED-------ELSVCKGDIIYVTRVEEGGWWEGTL---NGRTGWFPSNYVR   63 (76)
T ss_dssp             CCEEEECCSCBCCSSTT-------SCCBCSSCCEEESSCCSSSCEEEEE---TTEEEEECTTTSE
T ss_pred             CCEEEEECccCCCCCCC-------CccCCCCCEEEEeEEcCCCEEEEEE---CCcEEEEchHHEE
Confidence            45689999999998775       5999999999999999999999987   4789999998764

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.5e-11  Score=91.82  Aligned_cols=51  Identities=20%  Similarity=0.550  Sum_probs=45.9

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .+||+|||.+..++       +|+|++||+|.|+++.+++||.+++   +++.|+||++..
T Consensus         4 ~~~al~dy~~~~~~-------eLs~~~Gd~i~vl~~~~~~Ww~~~~---~g~~G~~P~~yv   54 (58)
T d1ng2a1           4 TYRAIADYEKTSGS-------EMALSTGDVVEVVEKSESGWWFCQM---KAKRGWIPASFL   54 (58)
T ss_dssp             EEECSSCBCCSSTT-------CCCBCTTCEEEEEECCTTSCCEEEE---CCCCCCCCGGGC
T ss_pred             EEEECccCcCCCCC-------CcCCCCCCEEEEEEecCCCeEEEEE---CCCCcEEcHhHE
Confidence            57999999998875       5999999999999999999999997   468999999865

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=5.1e-11  Score=93.54  Aligned_cols=54  Identities=22%  Similarity=0.393  Sum_probs=44.8

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecC-----CCceEEEEccCCCceeeecChhH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYD-----SNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d-----~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .++||+|||.+.+++      .+|+|++||+|+|+++.|     .+||.|+.  .+|+.|+||++..
T Consensus         6 ~~~~Alydy~~~~~~------~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~--~~G~~G~~P~nyv   64 (67)
T d2v1ra1           6 EFARALYDFVPENPE------MEVALKKGDLMAILSKKDPLGRDSDWWKVRT--KNGNIGYIPYNYI   64 (67)
T ss_dssp             EEEEESSCBCCSSTT------TBCCBCTTCEEEEEEEECTTSCEEEEEEEEC--TTSCEEEEEGGGE
T ss_pred             EEEEECccCCCCCCC------CEeCCCCCCEEEEEEeecCCCcCCCeEEEEe--CCCCEEEEEHHHE
Confidence            479999999997643      369999999999999865     48999986  3578999999764

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3e-11  Score=100.92  Aligned_cols=54  Identities=24%  Similarity=0.532  Sum_probs=47.7

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ....+||||||++..++       +|+|++||+|+|+++.|++||.|++   +++.|+||+...
T Consensus        33 ~~~~~~Alydy~a~~~~-------ELsf~~Gd~i~Vl~~~~~gWw~g~~---~g~~G~~P~nyV   86 (98)
T d1udla_          33 PVCQVIAMYDYAANNED-------ELSFSKGQLINVMNKDDPDWWQGEI---NGVTGLFPSNYV   86 (98)
T ss_dssp             CSEEEEESSCCCCSSTT-------SCCCCTTCEEEECBCCSSSEEBCBS---SSCBCCEETTSE
T ss_pred             CccEEEEccCCCCCCCC-------EeeEcCCCEEEEeEecCCCeEEEEE---CCeEEEEchHHE
Confidence            34579999999999876       5999999999999999999999986   578999999875

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3e-11  Score=92.77  Aligned_cols=53  Identities=21%  Similarity=0.355  Sum_probs=46.5

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .+||+|||++..++       +|+|++||+|+|+++.+++||.|++.. +++.|+||++..
T Consensus         5 ~~rAl~df~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~~~~~~-~g~~G~vP~nyv   57 (60)
T d1arka_           5 IFRAMYDYMAADAD-------EVSFKDGDAIINVQAIDEGWMYGTVQR-TGRTGMLPANYV   57 (60)
T ss_dssp             CEECCSCCCCSSSS-------BCCCCTTCEECCSEECSSSEEEEECTT-TCCEEEEETTTC
T ss_pred             EEEECccCCCCCCC-------CcCCCCCCEEEEEEEcCCCEEEEEECC-CCCEEEEcHHHE
Confidence            47999999998765       599999999999999999999998754 468999999864

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1e-10  Score=88.62  Aligned_cols=52  Identities=27%  Similarity=0.535  Sum_probs=45.4

Q ss_pred             EEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        50 VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ++|+|||++..++       +|+|++||+|+|+++.+++||.++... +++.|+||+...
T Consensus         3 ~vAl~dy~a~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~~~-~g~~G~vP~~yv   54 (57)
T d1efna_           3 FVALYDYEAITED-------DLSFHKGEKFQILNSSEGDWWEARSLT-TGETGYIPSNYV   54 (57)
T ss_dssp             EEESSCBCCSSTT-------BCCBCTTCEEEEEECSSCSEEEEEETT-TTEEEEEEGGGE
T ss_pred             EEECCCCCCCCcC-------CcCCCCCCEEEEEEecCCCCEEEEECC-CCCEEEEeHHHe
Confidence            3599999998875       599999999999999999999999865 478999998754

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=7.3e-11  Score=91.66  Aligned_cols=51  Identities=22%  Similarity=0.531  Sum_probs=43.8

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCC---CceEEEEccCCCceeeecChhH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDS---NWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~---~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .|+|+|||.++.++       +|+|++||+|.|+++.|.   +||.|++   +|+.|+||+...
T Consensus         6 ~v~Alydy~a~~~~-------ELs~~~Gd~i~vl~~~~~~~~gW~~g~~---~g~~G~~P~~yv   59 (63)
T d1ycsb2           6 VIYALWDYEPQNDD-------ELPMKEGDCMTIIHREDEDEIEWWWARL---NDKEGYVPRNLL   59 (63)
T ss_dssp             EEEESSCBCCSSTT-------BCCBCSSCEEEECCCCTTSCSSEEEEEE---TTEEEEEEGGGE
T ss_pred             EEEEeeCCCCCCCC-------CcCCCCCCEEEEEEecCCCCCCEEEEEE---CCeEEEEchHHh
Confidence            48899999999876       599999999999988654   5999997   578999998753

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=7.7e-11  Score=92.38  Aligned_cols=53  Identities=23%  Similarity=0.330  Sum_probs=46.4

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      +|+|+|||.+..++       +|+|++||+|+|+++.+.+||.++..  +|+.|+||+....
T Consensus         4 ~v~Alydf~a~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~~--~g~~G~~P~~yV~   56 (67)
T d1gl5a_           4 IVVAMYDFQATEAH-------DLRLERGQEYIILEKNDLHWWRARDK--YGSEGYIPSNYVT   56 (67)
T ss_dssp             CEEECSCBCCSSSS-------BCCBCTTCEEEEEECSSSSEEEEECS--SSCEEEEETTSEE
T ss_pred             EEEECCCCCCCCcC-------CcCCCCCCEEEEEEecCCCcEEEEEC--CCCEEEEEhHHeE
Confidence            57899999999875       59999999999999999999999863  4689999998753

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=7.7e-11  Score=93.91  Aligned_cols=57  Identities=9%  Similarity=0.131  Sum_probs=49.0

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccC---CCceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKE---GSECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~---~~~~GlIPS~~~~  110 (510)
                      ...+||+|||.+..++       +|+|.+||+|+|+++.+++||.++....   .++.||||+..++
T Consensus         7 g~~~~al~dy~~~~~~-------eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve   66 (74)
T d1wfwa_           7 GSTMTVIKDYYALKEN-------EICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILA   66 (74)
T ss_dssp             SCEEECCSCBCCCSSS-------CCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCC
T ss_pred             CCEEEEeEEECCCCCC-------CccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeE
Confidence            4578999999998765       5999999999999999999999998653   3589999998764

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=8.1e-11  Score=90.13  Aligned_cols=51  Identities=18%  Similarity=0.440  Sum_probs=44.2

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ++||+|||.+..++       +|+|++||+|.|+++. ++||.++..  +|+.|+||++..
T Consensus         3 ~a~alydf~a~~~~-------ELs~~~Gd~i~v~~~~-~~ww~~~~~--~g~~G~~P~nyv   53 (59)
T d1i07a_           3 YAKSKYDFVARNSS-------ELSVMKDDVLEILDDR-RQWWKVRNA--SGDSGFVPNNIL   53 (59)
T ss_dssp             EEEESSCBCCSSTT-------BCCBCTTCEEEECGGG-CCEEEEECT--TSCEEEEEGGGE
T ss_pred             EEEEccCCCCCCCC-------eeeEcCCCEEEEEEEc-CCcEEEEEc--CCCEEEECHHHe
Confidence            78999999999876       5999999999999975 489999874  468999999754

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2e-11  Score=96.91  Aligned_cols=56  Identities=23%  Similarity=0.438  Sum_probs=47.9

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ..++|||+|+|.+..++       +|+|++||+|+|+++.+++||.|+.  .++..|+||+...+
T Consensus         5 ~~~~v~Aly~f~a~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~--~~~~~G~fP~~yv~   60 (71)
T d2hspa_           5 FKCAVKALFDYKAQRED-------ELTFIKSAIIQNVEKQEGGWWRGDY--GGKKQLWFPSNYVE   60 (71)
T ss_dssp             SSSCEECCSCCCCSSSS-------SCCCCTTCEEBSCCCBTTTEECCBC--SSCCSCCEETTTCC
T ss_pred             CcEEEEEcccCCcCCcC-------CccCCCCCEEEEEEecCCCEEEEEE--CCeEEEEEchHHeE
Confidence            55679999999998875       5999999999999999999999986  34566899998764

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=9.2e-11  Score=93.22  Aligned_cols=55  Identities=18%  Similarity=0.270  Sum_probs=44.5

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecC-CCceEEEEccCCCceeeecChhH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYD-SNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d-~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..|||+|||.+..|++      +|+|++||+|+|+++.+ ++||.+++.+ .++.|+||+...
T Consensus         8 ~~~~Alydy~~~~~~d------eLsf~~Gd~i~vl~~~~~~gW~~g~~~~-~g~~G~fP~nyV   63 (72)
T d1spka_           8 QKVKTIFPHTAGNNKT------LLSFAQGDVLTLLIPEEKDGWLYGEHDT-TKARGWFPSSYT   63 (72)
T ss_dssp             CEEECSSCBCCSSCSS------BCCBCTTCEEEECCSSCBTTEEEEEETT-TCCEEEEEGGGC
T ss_pred             CEEEEeeccCCCCCCC------EeeEcCCCEEEEEEeecCCCeEEEEECC-CCCEEEEchhhE
Confidence            4789999999876543      69999999999997654 5699998743 468999998864

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.6e-10  Score=93.00  Aligned_cols=56  Identities=21%  Similarity=0.387  Sum_probs=48.0

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEcc--CCCceeeecChhHH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVK--EGSECGFIPSPVKL  110 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~--~~~~~GlIPS~~~~  110 (510)
                      .++||+|+|.+..++       +|+|++||+|+|+++.|++||.|+..+  ..++.|+||+....
T Consensus         8 ~~~~al~~y~~~~~~-------eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~   65 (80)
T d1ue9a_           8 EIAQVTSAYVASGSE-------QLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK   65 (80)
T ss_dssp             EEEEECSCCCCCSTT-------BCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEE
T ss_pred             CEEEECcCCCCCCCC-------EeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEE
Confidence            479999999999875       699999999999999999999999743  24578999987653

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.5e-10  Score=86.98  Aligned_cols=49  Identities=24%  Similarity=0.357  Sum_probs=43.9

Q ss_pred             EEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          51 RTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        51 RAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      +|+|+|.+..++       +|+|.+||++.|+++.+++||.|+.   +++.|++|+...
T Consensus         4 val~~y~a~~~~-------eLs~~~Gd~v~vl~~~~~gWw~g~~---~g~~G~~P~~yv   52 (53)
T d1wlpb1           4 VAIKAYTAVEGD-------EVSLLEGEAVEVIHKLLDGWWVIRK---DDVTGYFPSMYL   52 (53)
T ss_dssp             EECSCBCCCSSS-------BCCBCTTCEEEEEECCTTSSEEEES---SSCEEEECSTTE
T ss_pred             EEeeeECCCCCC-------EecCCCCCEEEEEeecCCceEEEEE---CCcEeEecHHhC
Confidence            599999999876       5999999999999999999999985   578999998753

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.8e-10  Score=89.33  Aligned_cols=52  Identities=23%  Similarity=0.533  Sum_probs=45.8

Q ss_pred             EEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        50 VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .+|+|||.+..++       +|+|++||+|+|+++.+++||.+++.. .|+.|+||+...
T Consensus         5 ~vAlydf~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~~~-~g~~G~vP~~yv   56 (64)
T d1fmka1           5 FVALYDYESRTET-------DLSFKKGERLQIVNNTEGDWWLAHSLS-TGQTGYIPSNYV   56 (64)
T ss_dssp             EEESSCBCCCSSS-------BCCBCTTCEEEESCCCSSSEEEEEETT-TCCEEEEEGGGE
T ss_pred             EEECccCCCcCcC-------CcCCCCCCEEEEEEEcCCCcEEEEECC-CCCEEEEehHHe
Confidence            4699999999875       599999999999999999999999865 468999998765

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.5e-10  Score=90.34  Aligned_cols=56  Identities=20%  Similarity=0.466  Sum_probs=46.7

Q ss_pred             CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecC--CCceEEEEccCCCceeeecChhH
Q psy6613          45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYD--SNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d--~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ++..++||+|||.++.++       +|+|++||+|+|+++.+  ++||.++..  +|+.|+||+...
T Consensus         4 ~~l~~~~Alydf~~~~~~-------eLs~~~Gd~i~vl~~~~~~~~Ww~~~~~--~G~~G~vP~~yv   61 (71)
T d1u5sa1           4 RVLHVVQTLYPFSSVTEE-------ELNFEKGETMEVIEKPENDPEWWKCKNA--RGQVGLVPKNYV   61 (71)
T ss_dssp             CSSSEEEESSCCCCCSSS-------BCCCCSSCCEEEEECCCTTTCEEEEEET--TTEEEEEETTSE
T ss_pred             cccEEEEECccCCCCCCC-------EeeECCCCEEEEEEcccCCCCeEEEEEC--CCCEEEEChHHE
Confidence            445679999999999875       59999999999999743  489999874  468999998764

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.4e-10  Score=91.30  Aligned_cols=54  Identities=19%  Similarity=0.540  Sum_probs=46.3

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ..+.+||+|||.+..++       +|+|++||+|+|+++ +++||.+++   +++.|+||+...+
T Consensus         9 ~~~~~~alydy~a~~~~-------ELs~~~Gd~i~vl~~-~~~ww~g~~---~g~~G~fP~~yve   62 (74)
T d1j3ta_           9 ENLKAQALCSWTAKKDN-------HLNFSKHDIITVLEQ-QENWWFGEV---HGGRGWFPKSYVK   62 (74)
T ss_dssp             CCCEEEESSCBCCCSTT-------BCCBCTTCEEEEEEE-CSSEEEEES---TTCCCEEEGGGEE
T ss_pred             CCeEEEEccCCCCCCCC-------EecCCCCCEEEEEEc-cCCeEEEEE---CCcEEEEchhhEE
Confidence            45679999999999876       599999999999998 568999986   5789999988753

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.97  E-value=2.2e-10  Score=86.46  Aligned_cols=52  Identities=13%  Similarity=0.226  Sum_probs=42.4

Q ss_pred             EEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChh
Q psy6613          50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPV  108 (510)
Q Consensus        50 VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~  108 (510)
                      +||+|||.+..++       +|+|++||+|.|++..+.+||-......+++.|+||++.
T Consensus         2 aralydf~a~~~~-------ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~ny   53 (56)
T d1zuua1           2 NKVLYAYVQKDDD-------EITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTY   53 (56)
T ss_dssp             CEECSCBCCCSTT-------BCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGG
T ss_pred             CEEeeeeCCCCCC-------EeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEehhh
Confidence            5999999999875       599999999999999887765443333467999999975

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=9.5e-11  Score=91.85  Aligned_cols=55  Identities=20%  Similarity=0.277  Sum_probs=47.3

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ...|+|+|||.+..++       +|+|++||+|.|+++.+.+||.++.  .+|+.|+||+...+
T Consensus         8 ~~~v~Alydy~a~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~--~~g~~G~vP~~yv~   62 (67)
T d1awwa_           8 LKKVVALYDYMPMNAN-------DLQLRKGDEYFILEESNLPWWRARD--KNGQEGYIPSNYVT   62 (67)
T ss_dssp             CCEEEBSSCCCCSSSS-------SCCCCSSCEEECCCCCSSSEECCBC--TTSCBCCEETTTBC
T ss_pred             CEEEEECcCCCCCCcC-------CcCCCCCCEEEEEEEcCCCeEEEEE--CCCCEEEEcHHHeE
Confidence            3468999999999876       5999999999999999999999975  35689999998653

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.4e-10  Score=94.85  Aligned_cols=62  Identities=13%  Similarity=0.209  Sum_probs=48.8

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCC-ceEEEEccCCCceeeecChhHHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSN-WWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~-WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      .-+++|+|||++.+. ..++.+.+|+|++||+|.|++..|++ ||.++..  +|+.||||++..++
T Consensus        17 ~~~~~Alydy~~~~~-~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~~--~G~~G~~P~nyve~   79 (96)
T d1wiea_          17 VHLCVARYSYNPFDG-PNENPEAELPLTAGKYLYVYGDMDEDGFYEGELL--DGQRGLVPSNFVDF   79 (96)
T ss_dssp             EEEEEESSCCCGGGS-SCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEET--TCCBCBCCTTSEEC
T ss_pred             ceEEEEeeeecCccc-CCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEeC--CCCEEEEehHHeEE
Confidence            456889999999642 35666778999999999999987766 6666653  46899999998754

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=5.1e-10  Score=86.83  Aligned_cols=55  Identities=22%  Similarity=0.443  Sum_probs=45.9

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      ...|+|+|||.+..++       +|+|++||+|+|+++ +++||.+++.. +++.|+||++..+
T Consensus         4 ~~~vvAlydy~~~~~~-------eLs~~~Gd~i~v~~~-~~~ww~~~~~~-~g~~G~vP~~yv~   58 (65)
T d1qcfa1           4 RIIVVALYDYEAIHHE-------DLSFQKGDQMVVLEE-SGEWWKARSLA-TRKEGYIPSNYVA   58 (65)
T ss_dssp             CCEEEESSCBCCCSTT-------BCCBCTTCEEEEEEC-CTTEEEEEETT-TCCEEEEEGGGEE
T ss_pred             cEEEEECCcCCCCCcC-------ccCCCCCCEEEEEEE-CCCCEEEEEcc-CCCEEEEchHHeE
Confidence            4578999999998875       599999999999986 55799998864 3689999998653

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3e-10  Score=97.38  Aligned_cols=53  Identities=23%  Similarity=0.323  Sum_probs=46.6

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      .++|+|||.+..++       +|+|++||+|+|+++.+++||.|++   +|+.|+||+...+.
T Consensus        16 ~~~alydy~a~~~d-------ELs~~~Gd~i~Vl~~~~~gWw~g~~---~g~~G~~P~~yv~~   68 (118)
T d1ng2a2          16 PYVAIKAYTAVEGD-------EVSLLEGEAVEVIHKLLDGWWVIRK---DDVTGYFPSMYLQK   68 (118)
T ss_dssp             EEEESSCBCCCSTT-------BCCBCTTCEEEEEECCTTSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             EEEECcCCCCCCCC-------EecCCCCCEEEEeEecCCCeEEEEE---CCeEEEEehhhEEE
Confidence            35699999998775       5999999999999999999999997   57899999988743

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.93  E-value=5.6e-10  Score=85.11  Aligned_cols=51  Identities=22%  Similarity=0.518  Sum_probs=43.8

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecC--CCceEEEEccCCCceeeecChhH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYD--SNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d--~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .++|+|||.+..++       +|+|++||+|.|+++.|  .+||.+++   +|+.|+||++..
T Consensus         3 ~~~Alydy~a~~~~-------ELs~~~Gd~v~vl~~~~~~~~W~~~~~---~g~~G~vP~~yv   55 (58)
T d1oota_           3 KAVALYSFAGEESG-------DLPFRKGDVITILKKSDSQNDWWTGRV---NGREGIFPANYV   55 (58)
T ss_dssp             EEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSCTTSEEEEEE---TTEEEEEEGGGE
T ss_pred             eEEEccCCCCCCCC-------CccCCCCCEEEEEEeecCCCCEEEEEE---CCcEEEEcHHHE
Confidence            58999999999875       59999999999999865  46899987   578999998753

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=4.9e-10  Score=88.58  Aligned_cols=58  Identities=17%  Similarity=0.324  Sum_probs=47.1

Q ss_pred             CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeec-CCCceEEEEccCCCceeeecChhHHH
Q psy6613          45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY-DSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~-d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      |....++|+|||.+..++       +|+|++||+|.|+++. +.+||.++.  ..|+.|+||+...++
T Consensus         4 p~g~~~~Alydy~a~~~~-------ELs~~~Gd~i~vl~~~~~~~W~~~~~--~~g~~G~~P~~yve~   62 (71)
T d1k9aa1           4 PSGTECIAKYNFHGTAEQ-------DLPFCKGDVLTIVAVTKDPNWYKAKN--KVGREGIIPANYVQK   62 (71)
T ss_dssp             CTTCEEEESSCBCCSSSS-------BCCBCTTCEEEEEEECSSTTEEEEEC--TTCCEEEEEGGGEEE
T ss_pred             CCCCEEEEccCCCCCCCC-------CccCCCCCEEEEeEeccCCCEEEEEe--CCCCEEEEchHHeEE
Confidence            334568899999998875       5999999999999975 567889986  346899999988653

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.8e-10  Score=92.79  Aligned_cols=53  Identities=19%  Similarity=0.468  Sum_probs=45.2

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeec--CCCceEEEEccCCCceeeecChhHHH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY--DSNWWIGRLVKEGSECGFIPSPVKLE  111 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~--d~~WWqar~v~~~~~~GlIPS~~~~E  111 (510)
                      .+||+|||.+..++       +|+|++||+|+|+++.  +.+||.+++   +|+.||||+...+.
T Consensus         7 ~~rAlydy~~~~~~-------ELs~~~Gd~v~Vl~~~~~~~~w~~~~~---~g~~G~~P~~Yve~   61 (93)
T d1uffa_           7 GYRALYPFEARNHD-------EMSFNSGDIIQVDEKTVGEPGWLYGSF---QGNFGWFPCNYVEK   61 (93)
T ss_dssp             CEEESSCBCCCSSS-------CCCBCTTCEEEECSSCCCSSSEEEEEE---TTEEEEEETTTEEE
T ss_pred             EEEECccCCCCCCC-------CccCcCCCEEEEEEeccCCCCEEEEEe---CCcEEEEchHHEEE
Confidence            47999999999876       5999999999999875  456888886   57899999998853

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=6.8e-10  Score=84.35  Aligned_cols=50  Identities=18%  Similarity=0.236  Sum_probs=41.6

Q ss_pred             EEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCC-CceEEEEccCCCceeeecChhH
Q psy6613          50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDS-NWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        50 VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~-~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      +.|+|||.+..++       +|+|++||+|+|+++.++ +||.++.   +++.|+||+...
T Consensus         3 ~vAlydy~a~~~~-------eLs~~~Gd~i~vl~~~~~~~W~~~~~---~g~~G~~P~~yv   53 (57)
T d1opka1           3 FVALYDFVASGDN-------TLSITKGEKLRVLGYNHNGEWCEAQT---KNGQGWVPSNYI   53 (57)
T ss_dssp             EEESSCBCCCSTT-------BCCBCTTCEEEEEEECTTSSEEEEEC---SSCEEEEEGGGE
T ss_pred             EEECccCCCCCcC-------CcCCCCCCEEEEeEecCCCCEEEEEE---CCCEeEEchhhe
Confidence            5799999999875       599999999999998665 5777875   467899999753

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=4.9e-10  Score=84.89  Aligned_cols=50  Identities=26%  Similarity=0.540  Sum_probs=38.7

Q ss_pred             EEEeeccCCCCCCCCCCCCccccccCCceEEEEeec-CCCceEEEEccCCCceeeecChhH
Q psy6613          50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY-DSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        50 VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~-d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ++|+|||.+..++       +|+|++||+|.|+++. +++||.+++   +|+.|+||++..
T Consensus         3 a~Alydy~a~~~~-------ELs~~~Gd~v~v~~~~~~~~W~~~~~---~g~~G~vP~nyv   53 (56)
T d1gria1           3 AIAKYDFKATADD-------ELSFKRGDILKVLNEECDQNWYKAEL---NGKDGFIPKNYI   53 (56)
T ss_dssp             EEECSCBCCCSSS-------CCCBCTTCEEEC------CCEEEEES---SSCEEEEEGGGE
T ss_pred             EEEeeCCCCCCCC-------CcCCCCCCEEEEEeccCCCCeEEEEE---CCcEEEEehhhE
Confidence            6799999999875       5999999999999864 567888875   578999999864

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.1e-09  Score=84.06  Aligned_cols=53  Identities=28%  Similarity=0.453  Sum_probs=44.5

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ..|+|+|||.+..++       +|+|++||+|+|+++.+ +||.++... +++.|+||+...
T Consensus         7 ~~~~al~dy~a~~~~-------eLs~~~Gd~i~v~~~~~-~ww~~~~~~-~g~~G~~P~~yV   59 (62)
T d2iima1           7 NLVIALHSYEPSHDG-------DLGFEKGEQLRILEQSG-EWWKAQSLT-TGQEGFIPFNFV   59 (62)
T ss_dssp             CEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCS-SEEEEEETT-TCCEEEEEGGGE
T ss_pred             cEEEECCCCCcCCcC-------CcCCCCCCEEEEeEEcC-CCEEEEecc-CCeEeEEcHHHE
Confidence            468899999999875       59999999999999865 588887754 478999999864

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=3.5e-10  Score=89.80  Aligned_cols=53  Identities=17%  Similarity=0.267  Sum_probs=44.3

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCC-CceEEEEccCCCceeeecChhH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDS-NWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~-~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ...+||+|||.+..++       +|+|++||+|.|+++.++ .||.++.   +++.|+||+...
T Consensus        10 ~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~W~~g~~---~g~~G~~P~~yv   63 (72)
T d1ugva_          10 FRKAKALYACKAEHDS-------ELSFTAGTVFDNVHPSQEPGWLEGTL---NGKTGLIPENYV   63 (72)
T ss_dssp             CCCEEESSCBCCCSSS-------BCCBCTTCEEBSCCBCSSTTEEEEES---SSCEEEEEGGGE
T ss_pred             CEEEEEcccCCCCCCC-------EecCCCCCEEEEeeccCCCCEEEEEe---CCCEEEEchHHE
Confidence            4469999999999875       599999999999998665 4778865   478999999865

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=4.2e-10  Score=88.87  Aligned_cols=51  Identities=24%  Similarity=0.477  Sum_probs=43.3

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      -.++|+|||.+..++       +|+|++||+|.|++. +++||.+++   +++.||||+...
T Consensus         9 ~~~vAl~~y~~~~~~-------eLs~~~Gd~v~vl~~-~~~Ww~~~~---~g~~G~vP~~yv   59 (69)
T d1uhfa_           9 EEYIALYPYSSVEPG-------DLTFTEGEEILVTQK-DGEWWTGSI---GDRSGIFPSNYV   59 (69)
T ss_dssp             EEEECSSCBCCSSSS-------BCCBCTTCEEEECEE-ETTEEEECS---TTCCEEECGGGC
T ss_pred             cEEEECccCCCCCcC-------CcCCCCCCEEEEEEe-cCCEEEEEE---CCcEEEEchhhE
Confidence            356799999999875       599999999999987 457999985   478999998765

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.2e-09  Score=92.87  Aligned_cols=58  Identities=14%  Similarity=0.202  Sum_probs=48.2

Q ss_pred             eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEee---cCCCceEEEEccC-----CCceeeecChhHHH
Q psy6613          47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK---YDSNWWIGRLVKE-----GSECGFIPSPVKLE  111 (510)
Q Consensus        47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~---~d~~WWqar~v~~-----~~~~GlIPS~~~~E  111 (510)
                      ..++||+|||.+.+.+       +|+|++||+|.|+.+   .+.+||.|+..+.     .++.|+||++...+
T Consensus        21 ~~~~~Alydy~~~~~~-------eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~   86 (106)
T d1i1ja_          21 ISMAVALQDYMAPDCR-------FLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVRE   86 (106)
T ss_dssp             SEEEEESSCBCCSSTT-------BCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEE
T ss_pred             eeEEEEccccCCCCCC-------CccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEE
Confidence            4579999999999765       699999999999987   5678999998653     24689999988654

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=8.6e-10  Score=88.97  Aligned_cols=51  Identities=18%  Similarity=0.420  Sum_probs=43.9

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeec----CCCceEEEEccCCCceeeecChhH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY----DSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~----d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      ++||+|||.+..++       +|+|++||+|+|+++.    +.+||.++.   +++.|+||+...
T Consensus        15 ~~~Alydy~a~~~~-------ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~---~g~~G~vP~~yv   69 (79)
T d1uhca_          15 VYFAVYTFKARNPN-------ELSVSANQKLKILEFKDVTGNTEWWLAEV---NGKKGYVPSNYI   69 (79)
T ss_dssp             CEEESSCBCCCSSS-------BCCBCTTCEEEEEESCCTTSCTTEEEEES---SSCEEEEEGGGE
T ss_pred             EEEECccCCCCCCC-------CccCCCCCEEEEEEeecCCCCCCEEEEEE---CCCEEEEehhhE
Confidence            57899999998875       5999999999999874    468999985   468999999865

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.8e-09  Score=89.51  Aligned_cols=52  Identities=21%  Similarity=0.303  Sum_probs=45.2

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecC----CCceEEEEccCCCceeeecChhHH
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYD----SNWWIGRLVKEGSECGFIPSPVKL  110 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d----~~WWqar~v~~~~~~GlIPS~~~~  110 (510)
                      .+||+|+|.+..++       +|+|++||+|.|+++.|    .+||.++.   +++.||||+..+.
T Consensus        19 ~~~a~~~f~a~~~~-------eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~---~g~~G~~P~~yv~   74 (92)
T d1ug1a_          19 LFQAERNFNAAQDL-------DVSLLEGDLVGVIKKKDPMGSQNRWLIDN---GVTKGFVYSSFLK   74 (92)
T ss_dssp             EEEESSCCCCCSSS-------CCCCCTTCEEEEEESCCTTSCSSEEEEEC---SSSEEEEEGGGEE
T ss_pred             EEEEcCCcCCCCCC-------eEEEecccEEEEEEcccccccCCceEEEe---cccEEEEEhhhce
Confidence            46899999999876       59999999999999864    68999986   5689999998865

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.4e-09  Score=88.87  Aligned_cols=54  Identities=15%  Similarity=0.332  Sum_probs=45.4

Q ss_pred             eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeec---------------CCCceEEEEccCCCceeeecChhH
Q psy6613          48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY---------------DSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~---------------d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      +-+||+|+|.+..++       +|+|++||+|.|+.+.               +++||.|++.. +|+.|+||+...
T Consensus         4 ~~~raly~y~~~~~~-------eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~-~g~~G~FP~nYV   72 (83)
T d1phta_           4 YQYRALYDYKKEREE-------DIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNET-TGERGDFPGTYV   72 (83)
T ss_dssp             EEEEECSCBCCSSTT-------BCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETT-TTEEEEEEGGGE
T ss_pred             CEEEEcCccCCCCCC-------cccccCCCEEEEEeccccccccccccccccCCCCeEEEEECC-CCcEeeEehhhE
Confidence            458999999999876       5999999999999753               45799999864 469999998764

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=1.3e-09  Score=88.61  Aligned_cols=57  Identities=14%  Similarity=0.311  Sum_probs=46.2

Q ss_pred             CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecC-----CCceEEEEccC-------CCceeeecChhH
Q psy6613          46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYD-----SNWWIGRLVKE-------GSECGFIPSPVK  109 (510)
Q Consensus        46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d-----~~WWqar~v~~-------~~~~GlIPS~~~  109 (510)
                      ..+.+||+|+|.+..++       +|+|++||+|.|+++.+     ++||.|...++       +|+.|+||++..
T Consensus        11 ~~~~~~Alydy~a~~~~-------ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyV   79 (83)
T d1bb9a_          11 FMFKVQAQHDYTATDTD-------ELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFT   79 (83)
T ss_dssp             CCEEEEESSCBCCSSTT-------BCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGE
T ss_pred             CCEEEEEceeECCCCCC-------EecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHe
Confidence            45679999999999875       59999999999998754     56999987542       247899999753

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=6.4e-09  Score=82.01  Aligned_cols=58  Identities=19%  Similarity=0.418  Sum_probs=43.2

Q ss_pred             EEEEeeccCCCCCCCCCCCCccccccCCceEEEEee-cCCCceEEEEccCCCceeeecChh
Q psy6613          49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK-YDSNWWIGRLVKEGSECGFIPSPV  108 (510)
Q Consensus        49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~-~d~~WWqar~v~~~~~~GlIPS~~  108 (510)
                      -++|+++|.+..+. .+....+|+|++||+|.|+++ .|++||.|++.+ +++.|+||+..
T Consensus         6 k~~a~~~y~~~~~~-~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~-~g~~G~fP~ny   64 (69)
T d1gcqc_           6 KMEVFQEYYGIPPP-PGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTA-TNEVGWFPCNR   64 (69)
T ss_dssp             EEEECSCBSSSSCC-GGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETT-TTEEEEEEGGG
T ss_pred             cEEEeeeEeccCCC-CCCCCCEeeEcCCCEEEEEEEecCCCEEEEEECC-CCCEEEEeHHH
Confidence            36899999864221 011234799999999999986 467899999864 46899999875

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.52  E-value=5.5e-07  Score=77.75  Aligned_cols=141  Identities=13%  Similarity=0.133  Sum_probs=82.6

Q ss_pred             CeE-EecCcCChHHHHHHHhc-CCCCceeeecCCCchh---------------hhhhhcccHHHHHHHHHcCCeEEEEec
Q psy6613         148 MII-ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS---------------VLTEVQTEIERVYELASTLQLVVLDCD  210 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p---------------Fe~~I~TslesI~~vi~sGKi~ILDID  210 (510)
                      .|+ +||+|+||||+.+.|-+ ....+.......-+..               .+..+..-++.+..++..+..+++|..
T Consensus         7 ~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   86 (174)
T d1y63a_           7 NILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGNHVVDYH   86 (174)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTSSSEEEEECS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHHHHhhhhhHHHhhcccchHHHHHHHHHHHHHhhhhhcccccccHH
Confidence            355 99999999999998877 4322222221111110               001111455667788889999999887


Q ss_pred             cCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHH---HHHHHH--HHHHHHHhcCCCCccEEE--eCCCHHHH
Q psy6613         211 TINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTR---HLNVQM--VAAEKLAQCPQEMFDVIL--DENQLEDA  283 (510)
Q Consensus       211 ~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e---~i~kRL--~aa~eLEq~~~~~FD~VI--vNDdLd~A  283 (510)
                      ...    .++......+||+.. +.++|.+|+..|+.....   .....+  ..-.+....|.  .|++|  .|+++++.
T Consensus        87 ~~~----~~~~~~~~~vI~L~~-~~e~l~~Rl~~R~~~~~~~~~~~~~e~~~~~~~~~~~~~~--~~~~i~~~~~t~ee~  159 (174)
T d1y63a_          87 SSE----LFPERWFHMVVVLHT-STEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYE--DDIVLVRENDTLEQM  159 (174)
T ss_dssp             CCT----TSCGGGCSEEEEEEC-CHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC--GGGEEEEECSSHHHH
T ss_pred             HHH----HHHHhcCceEEEEEC-CHHHHHHHHHhCCCcccccccchhhhhhhhhHHHHHHhhc--CCEEEECCCCCHHHH
Confidence            654    333322346778876 689999999999865431   111111  11112222333  35554  47888888


Q ss_pred             HHHHHHHHHHHH
Q psy6613         284 CEHIAEYLEAYW  295 (510)
Q Consensus       284 ~~eL~~ileai~  295 (510)
                      .+.+.++++.+.
T Consensus       160 ~~~V~~I~~~i~  171 (174)
T d1y63a_         160 AATVEEIRERVE  171 (174)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888887776653

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.50  E-value=1.4e-08  Score=89.82  Aligned_cols=19  Identities=53%  Similarity=0.587  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHhccC
Q psy6613         353 LRREKERQALSQLEKARVT  371 (510)
Q Consensus       353 ~~~~~e~~a~~~l~~a~~~  371 (510)
                      .|||.|+||+.||++|++|
T Consensus         2 ~~~~~~~~a~~~l~~a~~k   20 (136)
T d1vyua1           2 ARREVESQAQQQLERAKHK   20 (136)
T ss_dssp             HHHHHHHHHHHHHHHHTTS
T ss_pred             chhHHHHHHHHHHhhccCC
Confidence            6999999999999999995

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.33  E-value=5.5e-07  Score=77.73  Aligned_cols=143  Identities=10%  Similarity=0.005  Sum_probs=80.4

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCch-----h-------hhhh----hcccHHHHHHHHHcCCeEEE
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRS-----S-------VLTE----VQTEIERVYELASTLQLVVL  207 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~-----p-------Fe~~----I~TslesI~~vi~sGKi~IL  207 (510)
                      |++|  +||+|+||||+.+.|.+ ....|...-...-|.     .       +.+.    +......+......+..+|+
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~   83 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVIL   83 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHhcCCCeEe
Confidence            5666  89999999999998877 332232211111111     1       0111    11334556667788999999


Q ss_pred             EeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHhcCCCCccEEEeCC--CHHHH
Q psy6613         208 DCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQT--RHLNVQMVAAEKLAQCPQEMFDVILDEN--QLEDA  283 (510)
Q Consensus       208 DID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~--e~i~kRL~aa~eLEq~~~~~FD~VIvND--dLd~A  283 (510)
                      |.-........++....++.++...++.+++.+|+..|+....  .+....+   .+....+....+++|+++  +.+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~---~~~~~~~~~~~~~~idt~~~~~ee~  160 (176)
T d1zp6a1          84 DGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVADL---HSQFADLGAFEHHVLPVSGKDTDQA  160 (176)
T ss_dssp             CSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSCCCHHHHHHH---HHHTTCCGGGGGGEEECTTCCTTTT
T ss_pred             cccccHHHHHHHHhcccccccccCCCCHHHHHHHHHhCCCccccchhhHHHH---HHHHhhcccccCEEEECCCCCHHHH
Confidence            8755441112222233444444455688999999999976543  2222222   111223345567888755  47888


Q ss_pred             HHHHHHHHH
Q psy6613         284 CEHIAEYLE  292 (510)
Q Consensus       284 ~~eL~~ile  292 (510)
                      .+++.++|.
T Consensus       161 ~~~I~~~l~  169 (176)
T d1zp6a1         161 LQSAINALQ  169 (176)
T ss_dssp             TTTTHHHHH
T ss_pred             HHHHHHHHH
Confidence            887775543

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.23  E-value=1.3e-06  Score=74.31  Aligned_cols=138  Identities=9%  Similarity=-0.034  Sum_probs=77.1

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeec---CCCchh--hh--------hhhcccHHHHHHHHHcCCeEEEEeccCCchh
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMER---SNSRSS--VL--------TEVQTEIERVYELASTLQLVVLDCDTINHPS  216 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVs---hTTR~p--Fe--------~~I~TslesI~~vi~sGKi~ILDID~qg~~l  216 (510)
                      .||+|+||||+.++|.+ ++..+.....   +..+..  +.        .....-.+.+...+..+..+|+|........
T Consensus         8 ~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~   87 (176)
T d2bdta1           8 TGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVLDYIAFPDEA   87 (176)
T ss_dssp             ECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEEESCCCHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccHHH
Confidence            89999999999999988 5533222211   111111  00        1111445667778899999999986544111


Q ss_pred             Hhh----hc--CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCCC--HHHHHHHH
Q psy6613         217 QLA----KT--NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVILDENQ--LEDACEHI  287 (510)
Q Consensus       217 q~l----ks--~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvNDd--Ld~A~~eL  287 (510)
                      ..+    ..  .-.+++++...++.+++.+|+..|+.+..  ...+. +.-+++.... ..-+++|.|++  .++..+.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~--~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~~I  164 (176)
T d2bdta1          88 EALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQ--MGERCLELVEEFESKG-IDERYFYNTSHLQPTNLNDIV  164 (176)
T ss_dssp             HHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC------CGGGGHHHHHHHHTT-CCTTSEEECSSSCGGGHHHHH
T ss_pred             HHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCCCchh--hhHHHHHHHHHHHhCC-CCCeEEEECCCCCHHHHHHHH
Confidence            111    11  23355667777889999999999876432  11222 4444444431 23355666654  45555555


Q ss_pred             HHHH
Q psy6613         288 AEYL  291 (510)
Q Consensus       288 ~~il  291 (510)
                      ++++
T Consensus       165 ~~i~  168 (176)
T d2bdta1         165 KNLK  168 (176)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.22  E-value=3e-06  Score=72.56  Aligned_cols=140  Identities=14%  Similarity=0.131  Sum_probs=76.1

Q ss_pred             CeE-EecCcCChHHHHHHHhc-CCCCceeeecCCCch-h----hhhhh-------cccHHHHHHHHHcCCeEEEEeccCC
Q psy6613         148 MII-ITRVTADISLAKRSLMS-NPSKRAIMERSNSRS-S----VLTEV-------QTEIERVYELASTLQLVVLDCDTIN  213 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~-p----Fe~~I-------~TslesI~~vi~sGKi~ILDID~qg  213 (510)
                      +++ +||+|+||||+.+.|.+ .--.|- .+..-.|. .    +....       ....+.+....... .+.++...  
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--   81 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSGLKYI-NVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREG-GVIVDYHG--   81 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHCCEEE-EHHHHHHHTTCBCCCCSSSSCCCBCHHHHHHHHHHHHHHC-CEEEECSC--
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCcEE-echHHHHHhccccchhHHhhhhhHHHHHHHHHhhhhhhcC-CcccchhH--
Confidence            455 89999999999999976 221111 10000000 0    00000       01223333333333 33444333  


Q ss_pred             chhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHH---HHHHHH--HHHHHHHhcCCCCccEEEeCCCHHHHHHHHH
Q psy6613         214 HPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTR---HLNVQM--VAAEKLAQCPQEMFDVILDENQLEDACEHIA  288 (510)
Q Consensus       214 ~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e---~i~kRL--~aa~eLEq~~~~~FD~VIvNDdLd~A~~eL~  288 (510)
                        ...+.......+||+.. +.+++.+|+..|+.....   ......  ....+....|...+++++.|++.++..+.+.
T Consensus        82 --~~~~~~~~~~~~i~l~~-~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~i~~~~~~~~~~~~~i~  158 (173)
T d1rkba_          82 --CDFFPERWFHIVFVLRT-DTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNVD  158 (173)
T ss_dssp             --CTTSCGGGCSEEEEEEC-CHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSCGGGEEEEECSSHHHHHHHHH
T ss_pred             --HHHHHHhcCCCcceecC-CHHHHHHHHHhcCCCcccccccchhhhHHHHHHHHHHHhhhccEEEECCCCHHHHHHHHH
Confidence              22333333456677766 589999999998865321   111112  2223334456677889999999888887777


Q ss_pred             HHHHHH
Q psy6613         289 EYLEAY  294 (510)
Q Consensus       289 ~ileai  294 (510)
                      ++++.+
T Consensus       159 ~Ii~~i  164 (173)
T d1rkba_         159 QILKWI  164 (173)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777655

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.18  E-value=4.3e-06  Score=74.47  Aligned_cols=144  Identities=11%  Similarity=0.055  Sum_probs=80.8

Q ss_pred             CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh------hhhhhc----------------ccHHHHHHHHHcCCe
Q psy6613         148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS------VLTEVQ----------------TEIERVYELASTLQL  204 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p------Fe~~I~----------------TslesI~~vi~sGKi  204 (510)
                      +++ +||+|+||||+.+.|.++-.-..+++...-|..      ....+.                .....+......++.
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   84 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQENG   84 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhhhcccccCc
Confidence            455 999999999999988772211222221111111      000000                111122222333456


Q ss_pred             EEEEeccCCchhHhhhc----CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHH---HHHHhcCCCCccEEEe
Q psy6613         205 VVLDCDTINHPSQLAKT----NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAA---EKLAQCPQEMFDVILD  276 (510)
Q Consensus       205 ~ILDID~qg~~lq~lks----~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa---~eLEq~~~~~FD~VIv  276 (510)
                      +|+|--+..  ....+.    ...|-.+|+.--+.++|.+|++.+++.  +.+.+|+ .--   ..+...|... -++|.
T Consensus        85 ~vid~~~~~--~~q~~~l~~~~~~p~~~i~L~~~~e~l~~R~~~~~~~--e~~~~rl~~y~~~~~~l~~~y~~~-~~~Id  159 (189)
T d1zaka1          85 WLLDGYPRS--YSQAMALETLEIRPDTFILLDVPDELLVERVVFDDTE--EKVKLRLETYYQNIESLLSTYENI-IVKVQ  159 (189)
T ss_dssp             EEEESCCCS--HHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTTCCT--THHHHHHHHHHHHHHHHHHTTCCC-EEEEE
T ss_pred             EEeeccchh--hHHHhhhhhcccccchheeechhhhhhhhhccccchH--HHHHHHHHHHHHHHHHHHHHhCCC-EEEEE
Confidence            788887766  444333    345644444445678999999877654  5566777 222   2344445332 23443


Q ss_pred             -CCCHHHHHHHHHHHHHHHHH
Q psy6613         277 -ENQLEDACEHIAEYLEAYWR  296 (510)
Q Consensus       277 -NDdLd~A~~eL~~ileai~~  296 (510)
                       |.++++.++++.++|..+..
T Consensus       160 ~~~~idev~~~I~~~l~~il~  180 (189)
T d1zaka1         160 GDATVDAVFAKIDELLGSILE  180 (189)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhh
Confidence             68899999999999988764

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.15  E-value=8.3e-06  Score=69.67  Aligned_cols=135  Identities=16%  Similarity=0.081  Sum_probs=78.4

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-------------hhhh-----------h-cccHHHHHHH
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-------------VLTE-----------V-QTEIERVYEL  198 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-------------Fe~~-----------I-~TslesI~~v  198 (510)
                      .|+|  .||+|+||||+.+.|.+ .+..+...-..+-+..             +...           + ....+.+...
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVAM   82 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhccccccccchhHHhhhhcccchhHHHHHHHHHHHHHHHHHHH
Confidence            3555  79999999999999998 6644422111110100             0000           0 0233445667


Q ss_pred             HHcCCeEEEEeccCCchhHhh---hc---CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCcc
Q psy6613         199 ASTLQLVVLDCDTINHPSQLA---KT---NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFD  272 (510)
Q Consensus       199 i~sGKi~ILDID~qg~~lq~l---ks---~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD  272 (510)
                      ...+..++++..... .....   ..   ....++||+.+| .+++.+|+..|+....+......   ..+  ..+..||
T Consensus        83 ~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~v~l~~~-~e~~~~R~~~R~~~~~~~~~~~~---~~~--~~~~~~d  155 (178)
T d1qhxa_          83 ARAGARIIIDDVFLG-GAAAQERWRSFVGDLDVLWVGVRCD-GAVAEGRETARGDRVAGMAAKQA---YVV--HEGVEYD  155 (178)
T ss_dssp             HHTTCEEEEEECCTT-THHHHHHHHHHHTTCCEEEEEEECC-HHHHHHHHHHTSSSCTTHHHHHT---TGG--GTTCCCS
T ss_pred             HhhccceEEeeeecc-hHHHHHHHHHhhcCCceeecccCCC-HHHHHHHHHhcCCcchhhhhhhh---hhh--hcCCCCC
Confidence            788999999886644 12111   11   234456777765 88999999988754432221111   111  2246789


Q ss_pred             EEEeCC--CHHHHHHHHH
Q psy6613         273 VILDEN--QLEDACEHIA  288 (510)
Q Consensus       273 ~VIvND--dLd~A~~eL~  288 (510)
                      ++|.+.  +.+++.+++.
T Consensus       156 l~IDts~~s~ee~a~~I~  173 (178)
T d1qhxa_         156 VEVDTTHKESIECAWAIA  173 (178)
T ss_dssp             EEEETTSSCHHHHHHHHH
T ss_pred             EEEECCCCCHHHHHHHHH
Confidence            999764  5788887776

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=1.6e-05  Score=68.12  Aligned_cols=140  Identities=16%  Similarity=0.206  Sum_probs=77.9

Q ss_pred             CCeE--EecCcCChHHHHHHHhcCCCCceeeecCCCchhh------h-----hhh-----cccHHHHHHHHHcCCeEEEE
Q psy6613         147 GMII--ITRVTADISLAKRSLMSNPSKRAIMERSNSRSSV------L-----TEV-----QTEIERVYELASTLQLVVLD  208 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~pF------e-----~~I-----~TslesI~~vi~sGKi~ILD  208 (510)
                      +++|  +||+|+||||+.+.|.+... +......+.+...      .     ...     ..-...+......+..++++
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La~~l~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVAHQLH-AAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIV   84 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHT-CEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC-CCeechhhhhHHHHhhhhccCcceehhhhHHHHHHHHHHHHHHHhccCceEee
Confidence            3555  89999999999999887321 2222233333220      0     000     01234456667788888888


Q ss_pred             eccCCch-hHhhhcCCCc-eEEEEeCCCHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHHhcCCCCccEEEeC--CCHHH
Q psy6613         209 CDTINHP-SQLAKTNLSP-CIVYLKISSPKVLQRLIKSRGKSQ--TRHLNVQMVAAEKLAQCPQEMFDVILDE--NQLED  282 (510)
Q Consensus       209 ID~qg~~-lq~lks~l~P-ivIFIkPPS~e~L~~rLr~Rgt~~--~e~i~kRL~aa~eLEq~~~~~FD~VIvN--DdLd~  282 (510)
                      ....... ...++....+ ++||+.. +.+++.+|+..|+...  .+.+..++   +.++..+...+|+++++  .++|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~v~l~~-~~e~~~~Rl~~R~~~~~~~~~~~~~~---~~~e~~~~~e~~~~~id~~~~~e~  160 (171)
T d1knqa_          85 CSALKKHYRDLLREGNPNLSFIYLKG-DFDVIESRLKARKGHFFKTQMLVTQF---ETLQEPGADETDVLVVDIDQPLEG  160 (171)
T ss_dssp             CCCCSHHHHHHHHTTCTTEEEEEEEC-CHHHHHHHHHTSTTCCCCHHHHHHHH---HHCCCCCTTCTTEEEEECSSCHHH
T ss_pred             ccchHHHHHHHHHHhCCCceEEeecC-CHHHHHHHHHhCcCCCccHHHHHhhH---HHhhCCCcccCCEEEEeCCCCHHH
Confidence            7664411 1122223344 5566655 5999999999886532  22222222   22343344566766654  55777


Q ss_pred             HHHHHHHHH
Q psy6613         283 ACEHIAEYL  291 (510)
Q Consensus       283 A~~eL~~il  291 (510)
                      .++++.++|
T Consensus       161 v~~~i~~~l  169 (171)
T d1knqa_         161 VVASTIEVI  169 (171)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            777777554

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.92  E-value=1.9e-05  Score=70.20  Aligned_cols=141  Identities=7%  Similarity=0.050  Sum_probs=74.9

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchh----------hhhhhc----------ccHHHHHHHHHcCCeEEEEec
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS----------VLTEVQ----------TEIERVYELASTLQLVVLDCD  210 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p----------Fe~~I~----------TslesI~~vi~sGKi~ILDID  210 (510)
                      +||+|+||||+.++|.++-.-..++....-|..          +.....          +.+-.-+......+..++|--
T Consensus        12 ~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dg~   91 (194)
T d1qf9a_          12 LGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQGKNFLVDGF   91 (194)
T ss_dssp             EESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTSTTCCEEEETC
T ss_pred             ECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHHHhhhhhcCCeEEEec
Confidence            999999999999999872221222221222221          000000          111111112234567899987


Q ss_pred             cCCchhHhhh------c-CCCceEEEEeCCCHHHHHHHHHhcC------CCcHHHHHHHHHH-HH---HHHhcCCCCccE
Q psy6613         211 TINHPSQLAK------T-NLSPCIVYLKISSPKVLQRLIKSRG------KSQTRHLNVQMVA-AE---KLAQCPQEMFDV  273 (510)
Q Consensus       211 ~qg~~lq~lk------s-~l~PivIFIkPPS~e~L~~rLr~Rg------t~~~e~i~kRL~a-a~---eLEq~~~~~FD~  273 (510)
                      +..  .....      . ...|.+|+..--+.+++.+|+..|+      .+..+.+.+|++. ..   .+...|...-++
T Consensus        92 p~~--~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~~~~~~~d~~e~~~~Rl~~y~~~~~~~~~~y~~~~~~  169 (194)
T d1qf9a_          92 PRN--EENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKV  169 (194)
T ss_dssp             CCS--HHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCE
T ss_pred             chh--hhhHHHHHhhhhhcccccEEEEeecchHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence            766  33322      1 2345554445556788888886643      3456677778732 22   122222222234


Q ss_pred             EEe--CCCHHHHHHHHHHHHHH
Q psy6613         274 ILD--ENQLEDACEHIAEYLEA  293 (510)
Q Consensus       274 VIv--NDdLd~A~~eL~~ilea  293 (510)
                      +++  |.+.++.++++.++|+.
T Consensus       170 ~~Id~~~~ieeV~~~I~~ii~~  191 (194)
T d1qf9a_         170 KIIPANRDVNEVYNDVENLFKS  191 (194)
T ss_dssp             EEEECSSCHHHHHHHHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHHHH
Confidence            444  45799999999877764

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.88  E-value=1.6e-06  Score=76.73  Aligned_cols=20  Identities=45%  Similarity=0.672  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHhccC
Q psy6613         352 TLRREKERQALSQLEKARVT  371 (510)
Q Consensus       352 ~~~~~~e~~a~~~l~~a~~~  371 (510)
                      |||+|.|+||+.||++|+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~   20 (145)
T d1vyva1           1 AIRQEREQQAAIQLERAKSK   20 (145)
T ss_dssp             CHHHHHHHHHHHHHHHHHTS
T ss_pred             CchhHHHHHHHHhhhhcCCC
Confidence            68999999999999999995

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.80  E-value=4.6e-05  Score=65.18  Aligned_cols=20  Identities=5%  Similarity=0.019  Sum_probs=17.1

Q ss_pred             CeE--EecCcCChHHHHHHHhc
Q psy6613         148 MII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |+|  .||+|+||||+.++|.+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            455  89999999999998865

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=6.1e-05  Score=67.98  Aligned_cols=148  Identities=15%  Similarity=0.168  Sum_probs=81.3

Q ss_pred             CCCeE--EecCcCChHHHHHHHhcCCCCceeeecCCCchh----hhhh-----------------------------hcc
Q psy6613         146 PGMII--ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS----VLTE-----------------------------VQT  190 (510)
Q Consensus       146 ~~RpI--~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p----Fe~~-----------------------------I~T  190 (510)
                      +|+.|  -|+.|+||||+++.|.++-...++..-..||.|    .-+.                             ...
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   80 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQL   80 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCCCccchhhhHHHHhccccccccccchHHHHHHHHHHHHHH
Confidence            36666  699999999999988762111111111223333    0000                             003


Q ss_pred             cHHHHHHHHHcCCeEEEEecc------CCc----hhHhh---hc----CCCc-eEEEEeCCCHHHHHHHHHhcCCCc---
Q psy6613         191 EIERVYELASTLQLVVLDCDT------INH----PSQLA---KT----NLSP-CIVYLKISSPKVLQRLIKSRGKSQ---  249 (510)
Q Consensus       191 slesI~~vi~sGKi~ILDID~------qg~----~lq~l---ks----~l~P-ivIFIkPPS~e~L~~rLr~Rgt~~---  249 (510)
                      ..+.|...+.+|.+||+|=-+      ++.    .....   ..    .+.| .+||+.. +.++..+|++.|+...   
T Consensus        81 ~~~~i~~~l~~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~-~~e~~~~Ri~~R~~~~~~~  159 (210)
T d4tmka_          81 VETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDV-TPEVGLKRARARGELDRIE  159 (210)
T ss_dssp             HHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEEC-CHHHHHHHHHHHSSCCTTT
T ss_pred             HHHHHHHHHHcCCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecc-hHHHHHHHhhhccccchhh
Confidence            334467778999999998221      110    01111   11    2344 4566665 5788888888887532   


Q ss_pred             --HHHHHHHH-HHHHHHHhcCCCCccEEEe-CCCHHHHHHHHHHHHHHHHH
Q psy6613         250 --TRHLNVQM-VAAEKLAQCPQEMFDVILD-ENQLEDACEHIAEYLEAYWR  296 (510)
Q Consensus       250 --~e~i~kRL-~aa~eLEq~~~~~FD~VIv-NDdLd~A~~eL~~ileai~~  296 (510)
                        ..+..+++ +.-.++...++. + ++|. |.++|+..+++..+|+.++.
T Consensus       160 ~~~~~~~~~v~~~y~~~~~~~~~-~-~~IDa~~~~e~v~~~I~~~i~~~l~  208 (210)
T d4tmka_         160 QESFDFFNRTRARYLELAAQDKS-I-HTIDATQPLEAVMDAIRTTVTHWVK  208 (210)
T ss_dssp             TSCHHHHHHHHHHHHHHHHTCTT-E-EEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHHhcCCC-E-EEEECCCCHHHHHHHHHHHHHHHHh
Confidence              23445555 434455444332 2 3443 55788888888877776654

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.72  E-value=0.00011  Score=65.33  Aligned_cols=141  Identities=7%  Similarity=0.040  Sum_probs=75.6

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchh-----------hhhhhc------------ccHH-HHHHHHHcCCeEE
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS-----------VLTEVQ------------TEIE-RVYELASTLQLVV  206 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p-----------Fe~~I~------------Tsle-sI~~vi~sGKi~I  206 (510)
                      +||+|+||||+.++|.++.....++.-.--|..           +...+.            .-.. ...........+|
T Consensus        14 ~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   93 (196)
T d1ukza_          14 LGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKFL   93 (196)
T ss_dssp             ECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHHhhhccCCCcee
Confidence            999999999999999883322223221111211           000000            1112 2222334456788


Q ss_pred             EEeccCCchhHhhhc----CCCceEEEEeCCCHHHHHHHHHh------cCCCcHHHHHHHHHH-H---HHHHhcCCCCcc
Q psy6613         207 LDCDTINHPSQLAKT----NLSPCIVYLKISSPKVLQRLIKS------RGKSQTRHLNVQMVA-A---EKLAQCPQEMFD  272 (510)
Q Consensus       207 LDID~qg~~lq~lks----~l~PivIFIkPPS~e~L~~rLr~------Rgt~~~e~i~kRL~a-a---~eLEq~~~~~FD  272 (510)
                      +|.-+..  ......    ...|-.+|+.--+.+++.+|+..      |.....+.+.+|++. .   ..+...|.....
T Consensus        94 l~g~p~~--~~q~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~  171 (196)
T d1ukza_          94 IDGFPRK--MDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSK  171 (196)
T ss_dssp             EETCCCS--HHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTC
T ss_pred             eeccchh--HHHHHHHHHhccccceeeccCCCHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            8988876  433322    34555554455566777777543      344556777777721 1   223333323333


Q ss_pred             EEEe--CCCHHHHHHHHHHHHHH
Q psy6613         273 VILD--ENQLEDACEHIAEYLEA  293 (510)
Q Consensus       273 ~VIv--NDdLd~A~~eL~~ilea  293 (510)
                      ++.+  +.+.++.++++..+|..
T Consensus       172 ~~~Id~~~s~eeV~~~I~~~i~~  194 (196)
T d1ukza_         172 VVRVRCDRSVEDVYKDVQDAIRD  194 (196)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHHh
Confidence            4444  45799999999877653

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.68  E-value=0.00011  Score=64.56  Aligned_cols=141  Identities=14%  Similarity=0.060  Sum_probs=77.9

Q ss_pred             CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh--------------hhhhhcccH----HHHHHHH---HcCCeE
Q psy6613         148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS--------------VLTEVQTEI----ERVYELA---STLQLV  205 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p--------------Fe~~I~Tsl----esI~~vi---~sGKi~  205 (510)
                      +++ +||+|+||||+.++|.++.....+++..-.|..              ++.......    +-+.+.+   ..+...
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   81 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGF   81 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGGTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHhhCccccccE
Confidence            355 999999999999999873222222222111211              010000222    2222222   235568


Q ss_pred             EEEeccCCchhHhhhc--------CCCceEEEEeCCCHHHHHHHHHhcC--CCcHHHHHHHHHH-HH---HHHhcCCCCc
Q psy6613         206 VLDCDTINHPSQLAKT--------NLSPCIVYLKISSPKVLQRLIKSRG--KSQTRHLNVQMVA-AE---KLAQCPQEMF  271 (510)
Q Consensus       206 ILDID~qg~~lq~lks--------~l~PivIFIkPPS~e~L~~rLr~Rg--t~~~e~i~kRL~a-a~---eLEq~~~~~F  271 (510)
                      ++|.-+..  ......        .+.|.+++..--+.+++.+|+.+|+  .+..+.+.+|+.. .+   .+...|...+
T Consensus        82 i~d~~p~~--~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~r~~~~~~~i~~rl~~y~~~~~~l~~~y~~~~  159 (181)
T d2cdna1          82 ILDGYPRS--VEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYRDQL  159 (181)
T ss_dssp             EEESCCCS--HHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHHHTTTTE
T ss_pred             Eecccccc--hhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHhcCe
Confidence            88887766  222211        3456454444456899999998765  4556677778832 22   2444565443


Q ss_pred             cEEE-eCCCHHHHHHHHHHHH
Q psy6613         272 DVIL-DENQLEDACEHIAEYL  291 (510)
Q Consensus       272 D~VI-vNDdLd~A~~eL~~il  291 (510)
                       ++| .|.+.++.++++..+|
T Consensus       160 -~~Id~~~s~eeV~~~I~~~l  179 (181)
T d2cdna1         160 -KTVDAVGTMDEVFARALRAL  179 (181)
T ss_dssp             -EEEECCSCHHHHHHHHHHHT
T ss_pred             -EEEECCCCHHHHHHHHHHHh
Confidence             344 3678899999887554

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.66  E-value=3.9e-05  Score=64.72  Aligned_cols=105  Identities=16%  Similarity=0.101  Sum_probs=57.7

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------h----hhhhc-ccHHHHHHHHHcC---CeEEEEec
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------V----LTEVQ-TEIERVYELASTL---QLVVLDCD  210 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------F----e~~I~-TslesI~~vi~sG---Ki~ILDID  210 (510)
                      .||+|+||||+.++|+. ++. +.+.-+...|..           +    +..+. ...+.+..+++.|   ..+|+|--
T Consensus         8 ~G~pGsGKTTla~~L~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~d~~   86 (152)
T d1ly1a_           8 IGCPGSGKSTWAREFIAKNPG-FYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDT   86 (152)
T ss_dssp             ECCTTSSHHHHHHHHHHHSTT-EEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCEEEECSC
T ss_pred             ECCCCCCHHHHHHHHHHhCCC-CEEechHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHHHHHHHhhccCCCcccccc
Confidence            89999999999999987 654 322222222221           0    00011 3445555566654   56777753


Q ss_pred             cCC--c---hhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCc-HHHHHHHH
Q psy6613         211 TIN--H---PSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQ-TRHLNVQM  257 (510)
Q Consensus       211 ~qg--~---~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~-~e~i~kRL  257 (510)
                      ...  .   ..+.++. ....++||+.+ +.+++.+|+..|+... .++...+|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~-~~e~~~~R~~~R~~~~~~~~~i~~~  139 (152)
T d1ly1a_          87 NLNPERRLAWETFAKEYGWKVEHKVFDV-PWTELVKRNSKRGTKAVPIDVLRSM  139 (152)
T ss_dssp             CCSHHHHHHHHHHHHHHTCEEEEEECCC-CHHHHHHHHTTCGGGCCCHHHHHHH
T ss_pred             cCCHHHHHHHHHhhhhhccchhhhhcCC-CHHHHHHHHHccCCCCCCHHHHHHH
Confidence            322  0   0111222 34456677765 5999999998887422 23444444

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.58  E-value=9.3e-05  Score=65.86  Aligned_cols=84  Identities=10%  Similarity=-0.045  Sum_probs=54.2

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecC---CCchhhhhhhcccHHHHHHHHHcCCeEEEEeccCCchhHhhh------c
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERS---NSRSSVLTEVQTEIERVYELASTLQLVVLDCDTINHPSQLAK------T  221 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVsh---TTR~pFe~~I~TslesI~~vi~sGKi~ILDID~qg~~lq~lk------s  221 (510)
                      +|++|+||||+.++|+...+ +.. ++.   .++.       -..+.++..+..|+.+|+|..... ......      .
T Consensus        20 ~G~pGsGKST~a~~l~~~~~-~~~-i~~D~~~~~~-------~~~~~~~~~l~~g~~vIiD~t~~~-~~~R~~~~~~a~~   89 (172)
T d1yj5a2          20 VGFPGAGKSTFIQEHLVSAG-YVH-VNRDTLGSWQ-------RCVSSCQAALRQGKRVVIDNTNPD-VPSRARYIQCAKD   89 (172)
T ss_dssp             ECCTTSSHHHHHHHHTGGGT-CEE-EEHHHHCSHH-------HHHHHHHHHHHTTCCEEEESCCCS-HHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHhcC-CEE-EchHHHHHHH-------HHHHHHHHHHHCCCCceeeCcCCC-HHHHHHHHHHHHh
Confidence            99999999999999987211 211 211   1111       235677788999999999976544 222111      1


Q ss_pred             -CCCceEEEEeCCCHHHHHHHHHhc
Q psy6613         222 -NLSPCIVYLKISSPKVLQRLIKSR  245 (510)
Q Consensus       222 -~l~PivIFIkPPS~e~L~~rLr~R  245 (510)
                       .....+||+.+ +.+++.+|...|
T Consensus        90 ~~~~~~~v~l~~-~~e~~~~Rn~~R  113 (172)
T d1yj5a2          90 AGVPCRCFNFCA-TIEQARHNNRFR  113 (172)
T ss_dssp             HTCCEEEEEECC-CHHHHHHHHHHH
T ss_pred             cCCCEEEEEeCC-CHHHHHHHHHHh
Confidence             34455666655 789999887766

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.00021  Score=65.44  Aligned_cols=150  Identities=13%  Similarity=0.048  Sum_probs=80.2

Q ss_pred             CCCeE--EecCcCChHHHHHHHhc--CCCCceeee---cC-CCchh-----h----------------hhhhcccHHHHH
Q psy6613         146 PGMII--ITRVTADISLAKRSLMS--NPSKRAIME---RS-NSRSS-----V----------------LTEVQTEIERVY  196 (510)
Q Consensus       146 ~~RpI--~GPsGvGKsTL~~rLL~--~P~~F~~sV---sh-TTR~p-----F----------------e~~I~TslesI~  196 (510)
                      +|++|  .|+.|+||||+.+.|.+  ....+....   |. .|..-     |                ..+..-..+.|.
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r~~~~~~i~   81 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLIK   81 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCcccchhhhhhhhcccccchhhhhhHHHHHHHHHHHhHH
Confidence            46777  59999999998887765  111221111   11 11100     1                111113457788


Q ss_pred             HHHHcCCeEEEEeccC----------CchhHhhhc----CCCc-eEEEEeCCCHHHHHHHHHhcCCCc-HHHHHHHH-HH
Q psy6613         197 ELASTLQLVVLDCDTI----------NHPSQLAKT----NLSP-CIVYLKISSPKVLQRLIKSRGKSQ-TRHLNVQM-VA  259 (510)
Q Consensus       197 ~vi~sGKi~ILDID~q----------g~~lq~lks----~l~P-ivIFIkPPS~e~L~~rLr~Rgt~~-~e~i~kRL-~a  259 (510)
                      ..+.+|++||+|=-+.          +.....+..    -+.| ++||+..| .++..+|...++... +.+...++ +.
T Consensus        82 ~~l~~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~-~e~~~~R~~~~~~~~E~~~~~~r~~~~  160 (209)
T d1nn5a_          82 EKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQ-LADAAKRGAFGHERYENGAFQERALRC  160 (209)
T ss_dssp             HHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECC-HHHHHHC-----CTTCSHHHHHHHHHH
T ss_pred             HHhhcccceeecchhhhhhhhhhhccCccHHHHHHHhccCCCCceeeeeccc-HHHHhhhhcccccccccHHHHHHHHHH
Confidence            8889999999994211          101222222    2345 56666655 677776765443221 23344555 33


Q ss_pred             HHHHHhcCCCCccEEEe--CCCHHHHHHHHHHHHHHHHHhc
Q psy6613         260 AEKLAQCPQEMFDVILD--ENQLEDACEHIAEYLEAYWRAT  298 (510)
Q Consensus       260 a~eLEq~~~~~FD~VIv--NDdLd~A~~eL~~ileai~~a~  298 (510)
                      =.++...++.  .++++  +.+.++..+++..+++.++...
T Consensus       161 Y~~l~~~~~~--~~~~IDa~~~~e~V~~~I~~~v~~~l~~~  199 (209)
T d1nn5a_         161 FHQLMKDTTL--NWKMVDASKSIEAVHEDIRVLSEDAIATA  199 (209)
T ss_dssp             HHHHTTCTTS--CEEEEETTSCHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHhCCC--CEEEEECCCCHHHHHHHHHHHHHHHHHhc
Confidence            3455444332  44555  4679999999998888776543

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.54  E-value=0.00014  Score=63.11  Aligned_cols=72  Identities=13%  Similarity=0.014  Sum_probs=46.1

Q ss_pred             CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHH-HH---HHHhcCCCCccEEEe--CCCHHHHHHHHHHHHHHHH
Q psy6613         222 NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVA-AE---KLAQCPQEMFDVILD--ENQLEDACEHIAEYLEAYW  295 (510)
Q Consensus       222 ~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~a-a~---eLEq~~~~~FD~VIv--NDdLd~A~~eL~~ileai~  295 (510)
                      ...+.++|....+.+.+.+|+..++  ..+.+.+|++. .+   .+...|.....+..+  +.+.++.++++..+|+.+.
T Consensus       104 ~~~~~~~~~l~~~~e~~~~R~~~~~--~~e~~~~Rl~~y~~~~~~l~~~y~~~~~~~~Id~~~~~eeV~~~I~~~L~~l~  181 (182)
T d1zina1         104 GRKLDYVIHIDVRQDVLMERLTADD--NEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELLGGLA  181 (182)
T ss_dssp             TCCCCEEEEEECCHHHHHHHHHTTC--SHHHHHHHHHHHHHHHTHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHHHHH
T ss_pred             CCceeeeeccccccchhhhcccccc--chHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhcc
Confidence            3456566666667889999988764  45667777722 22   233333333345444  4679999999998888764

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.50  E-value=0.00027  Score=62.04  Aligned_cols=141  Identities=11%  Similarity=0.005  Sum_probs=78.0

Q ss_pred             eE-EecCcCChHHHHHHHhcCCCCceeeecCCCch------hhhhhhc------------ccHHHHHHHHH---cCCeEE
Q psy6613         149 II-ITRVTADISLAKRSLMSNPSKRAIMERSNSRS------SVLTEVQ------------TEIERVYELAS---TLQLVV  206 (510)
Q Consensus       149 pI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~------pFe~~I~------------TslesI~~vi~---sGKi~I  206 (510)
                      |+ +||+|+||||+.++|.++..-..+++..--|.      +.-..+.            .....+...+.   ..+..|
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~v   82 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSDCDNGFL   82 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSSTTSSCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHhhhcCCchHHHHHHHHHcCCcccCcchhHHHHHhhccccccccee
Confidence            45 99999999999999887221112221111111      1000010            11222222221   245678


Q ss_pred             EEeccCCchhHh--hh----c-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHH-HH---HHHHhcCCCCccEEE
Q psy6613         207 LDCDTINHPSQL--AK----T-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMV-AA---EKLAQCPQEMFDVIL  275 (510)
Q Consensus       207 LDID~qg~~lq~--lk----s-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~-aa---~eLEq~~~~~FD~VI  275 (510)
                      +|.-|.. ..+.  +.    . ...+..++....+.+.+.+|++.+  +..+.+.+|++ -.   ..+...|.....++.
T Consensus        83 l~g~p~~-~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~~--~~~e~i~~R~~~y~~~~~~i~~~y~~~~~~~~  159 (182)
T d1s3ga1          83 LDGFPRT-VPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTAD--DNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVN  159 (182)
T ss_dssp             EESCCCS-HHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTT--CSHHHHHHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred             eeccccc-hhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhhhcc--chhHHHHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence            8887755 2221  11    1 355667777777889999888754  45677888872 22   234444544445555


Q ss_pred             eC--CCHHHHHHHHHHHHH
Q psy6613         276 DE--NQLEDACEHIAEYLE  292 (510)
Q Consensus       276 vN--DdLd~A~~eL~~ile  292 (510)
                      +|  .++++.++++..+|+
T Consensus       160 Id~~~~~eeV~~~I~~il~  178 (182)
T d1s3ga1         160 INGQKDIKDVFKDLDVILQ  178 (182)
T ss_dssp             EECSSCHHHHHHHHHHHHT
T ss_pred             EECCCCHHHHHHHHHHHHH
Confidence            54  468999998886653

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.47  E-value=0.00018  Score=64.03  Aligned_cols=140  Identities=10%  Similarity=0.142  Sum_probs=75.5

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchh----------hhhhhc----ccHHHHH--------HHHHcCCeEEEE
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS----------VLTEVQ----TEIERVY--------ELASTLQLVVLD  208 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p----------Fe~~I~----TslesI~--------~vi~sGKi~ILD  208 (510)
                      +||+|+||+|+.++|.+...-..++..+--|.-          +...+.    .+.+.+.        ......+..|+|
T Consensus        14 ~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~ild   93 (194)
T d3adka_          14 VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDTSKGFLID   93 (194)
T ss_dssp             EECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTTTCSCEEEE
T ss_pred             ECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhhcccccccceee
Confidence            999999999999999882222222221111111          011111    2222222        222345568999


Q ss_pred             eccCCchhHhhh---cCC-Cc-eEEEEeCCCHHHHHHH------HHhcCCCcHHHHHHHH-HH---HHHHHhcCCCCccE
Q psy6613         209 CDTINHPSQLAK---TNL-SP-CIVYLKISSPKVLQRL------IKSRGKSQTRHLNVQM-VA---AEKLAQCPQEMFDV  273 (510)
Q Consensus       209 ID~qg~~lq~lk---s~l-~P-ivIFIkPPS~e~L~~r------Lr~Rgt~~~e~i~kRL-~a---a~eLEq~~~~~FD~  273 (510)
                      --|..  ....+   ..+ .| .++|+.. ..+++.+|      ...|..+..+.+.+|+ .-   ...+...|.+...+
T Consensus        94 g~pr~--~~qa~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~r~~d~~e~i~~R~~~y~~~~~~~~~~y~~~~~~  170 (194)
T d3adka_          94 GYPRE--VKQGEEFERKIGQPTLLLYVDA-GPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIV  170 (194)
T ss_dssp             SCCSS--HHHHHHHHHHTCCCSEEEEEEC-CHHHHHHHHHHHHHHHTCCCCCSTTHHHHHHHHHHHTHHHHHHHTTTTCE
T ss_pred             eccch--hHHHHHHHHHhCCccchhcccc-chhhhHhHhhhhcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCE
Confidence            88876  43332   222 33 4444444 44555554      3456667777788888 22   23344445454444


Q ss_pred             EEe--CCCHHHHHHHHHHHHHH
Q psy6613         274 ILD--ENQLEDACEHIAEYLEA  293 (510)
Q Consensus       274 VIv--NDdLd~A~~eL~~ilea  293 (510)
                      +.+  +.+.++.++++..+|++
T Consensus       171 ~~Id~~~s~~eV~~~I~~~i~~  192 (194)
T d3adka_         171 RKVNAEGSVDDVFSQVCTHLDT  192 (194)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHT
T ss_pred             EEEECCCCHHHHHHHHHHHHHh
Confidence            444  45789999998877654

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.0003  Score=61.03  Aligned_cols=144  Identities=12%  Similarity=0.053  Sum_probs=63.9

Q ss_pred             CCCCeE--EecCcCChHHHHHHHhc--CCCCcee--eecCCCchh------h--hh---hhcccHHHHHHHHHcCCeEEE
Q psy6613         145 SPGMII--ITRVTADISLAKRSLMS--NPSKRAI--MERSNSRSS------V--LT---EVQTEIERVYELASTLQLVVL  207 (510)
Q Consensus       145 s~~RpI--~GPsGvGKsTL~~rLL~--~P~~F~~--sVshTTR~p------F--e~---~I~TslesI~~vi~sGKi~IL  207 (510)
                      .+|.+|  +|++|+|||||.+.|-+  +...+..  ....-.|..      |  ..   ........+......+..++.
T Consensus        17 ~~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (195)
T d1x6va3          17 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCIT   96 (195)
T ss_dssp             CCCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            356666  89999999999998865  1111111  111011111      0  00   001334556777889999999


Q ss_pred             EeccCCchhHhhh------c-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhc--CCCCccEEEeCC
Q psy6613         208 DCDTINHPSQLAK------T-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQC--PQEMFDVILDEN  278 (510)
Q Consensus       208 DID~qg~~lq~lk------s-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~--~~~~FD~VIvND  278 (510)
                      +.....  .....      . ....++.........+...+...+-......  ........+...  .+..+|++|.++
T Consensus        97 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~e~~~~~dl~IdT~  172 (195)
T d1x6va3          97 SFISPY--TQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARA--GEIKGFTGIDSEYEKPEAPELVLKTD  172 (195)
T ss_dssp             ECCCCC--HHHHHHHHHHHHTTTCCEEEEEECC--------------------------------CCCCCSSCSEEECTT
T ss_pred             ccccch--HHHHHHHHHHHhccccccccccchhheeeehhhccchhhhhhhh--hhhhhhhhhccccCCCCCCCEEEECC
Confidence            987654  22111      1 2233333333333433333332221110000  000111112222  246789999775


Q ss_pred             --CHHHHHHHHHHHHH
Q psy6613         279 --QLEDACEHIAEYLE  292 (510)
Q Consensus       279 --dLd~A~~eL~~ile  292 (510)
                        +++++.+++.++|+
T Consensus       173 ~~s~ee~~~~Il~~l~  188 (195)
T d1x6va3         173 SCDVNDCVQQVVELLQ  188 (195)
T ss_dssp             TSCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence              68888888886664

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=0.0015  Score=59.58  Aligned_cols=154  Identities=10%  Similarity=0.037  Sum_probs=75.6

Q ss_pred             CCCeE--EecCcCChHHHHHHHhc-CCCCce-eeecC-CCchh----------------------hhhhhcccHHHHHHH
Q psy6613         146 PGMII--ITRVTADISLAKRSLMS-NPSKRA-IMERS-NSRSS----------------------VLTEVQTEIERVYEL  198 (510)
Q Consensus       146 ~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~-~sVsh-TTR~p----------------------Fe~~I~TslesI~~v  198 (510)
                      +|++|  -|+-|+||||+.+.|.+ .-.+.. ...|. .|.--                      |.+...-..+.|...
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~~~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~r~~~~~~i~~~   81 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKIKKD   81 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTTSEEEEESSCTTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHhCCEEEEECCCCchHhHhHHHhhhhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            57776  79999999999998876 322222 11221 11100                      001111344668888


Q ss_pred             HHcCCeEEEEeccC---------C---chhHhhh-c---CCCc-eEEEEeCCCHHHHHHHHHhcCCCc--HHHHHHHHHH
Q psy6613         199 ASTLQLVVLDCDTI---------N---HPSQLAK-T---NLSP-CIVYLKISSPKVLQRLIKSRGKSQ--TRHLNVQMVA  259 (510)
Q Consensus       199 i~sGKi~ILDID~q---------g---~~lq~lk-s---~l~P-ivIFIkPPS~e~L~~rLr~Rgt~~--~e~i~kRL~a  259 (510)
                      +..|++||+|=-+.         +   ..+..+. .   .+.| ++||+..|..+.+. |.++++.+.  ..+...++..
T Consensus        82 l~~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~~-r~~~~~~~~~e~~~~~~~v~~  160 (214)
T d1tmka_          82 LLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNA-EKSGFGDERYETVKFQEKVKQ  160 (214)
T ss_dssp             HHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC-----------CCSSTTCCHHHHHHHHH
T ss_pred             HhcCCeeEecCccccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHHHH-HhcccchhhhhhHHHHHHHHH
Confidence            88999999992110         0   0011111 1   2455 77888665444433 344444332  1233445522


Q ss_pred             H-HHHHhcCCC--CccEEE-e--CCCHHHHHHHHHHHHHHHHHhcCC
Q psy6613         260 A-EKLAQCPQE--MFDVIL-D--ENQLEDACEHIAEYLEAYWRATHP  300 (510)
Q Consensus       260 a-~eLEq~~~~--~FD~VI-v--NDdLd~A~~eL~~ileai~~a~h~  300 (510)
                      . .++...+..  ....++ .  +.+.++..+++..+|+.++...-.
T Consensus       161 ~Y~~l~~~~~~~~~~~~~iID~s~~~~eev~~~I~~~v~~~l~~~~~  207 (214)
T d1tmka_         161 TFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVLSTHID  207 (214)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEECTTCCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHhhhhCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHhhcC
Confidence            2 233211111  123333 3  346888889999888888766533

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00042  Score=61.02  Aligned_cols=89  Identities=10%  Similarity=0.116  Sum_probs=53.0

Q ss_pred             CCeEEEEeccCCchhHhhhc-------CCCceEEEEeCCCHHHHHHHHHhcC------CCcHHHHHHHH-HHH---HHHH
Q psy6613         202 LQLVVLDCDTINHPSQLAKT-------NLSPCIVYLKISSPKVLQRLIKSRG------KSQTRHLNVQM-VAA---EKLA  264 (510)
Q Consensus       202 GKi~ILDID~qg~~lq~lks-------~l~PivIFIkPPS~e~L~~rLr~Rg------t~~~e~i~kRL-~aa---~eLE  264 (510)
                      ...+++|--+..  ...+..       ...+.+|++...+.+++.+|+..|+      .+..+.+.+|+ .-.   ..+.
T Consensus        84 ~~~~~~~g~pr~--~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~~r~~~~~e~i~~r~~~y~~~~~~l~  161 (194)
T d1teva_          84 KNKFLIDGFPRN--QDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPII  161 (194)
T ss_dssp             CCEEEEESCCCS--HHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeeccchhh--HHHHHHHhhhhhccccccEEEeecCcchhheeecccCCCcccCCccchHHHHHHHHHHHHHHHHHH
Confidence            567888888866  333321       2345556666667777777776652      33456677776 222   2243


Q ss_pred             hcCCCCccEEEeC--CCHHHHHHHHHHHHH
Q psy6613         265 QCPQEMFDVILDE--NQLEDACEHIAEYLE  292 (510)
Q Consensus       265 q~~~~~FD~VIvN--DdLd~A~~eL~~ile  292 (510)
                      ..|.....++++|  .+.++.++++..+|+
T Consensus       162 ~~y~~~~~~~~IDa~~s~eeV~~~I~~il~  191 (194)
T d1teva_         162 DLYEEMGKVKKIDASKSVDEVFDEVVQIFD  191 (194)
T ss_dssp             HHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence            4444444555554  568888888886654

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.34  E-value=0.00033  Score=62.81  Aligned_cols=138  Identities=9%  Similarity=0.056  Sum_probs=72.3

Q ss_pred             CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCch------h----hhhhhc----ccHHHHHHH------HHcCCeEE
Q psy6613         148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRS------S----VLTEVQ----TEIERVYEL------ASTLQLVV  206 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~------p----Fe~~I~----TslesI~~v------i~sGKi~I  206 (510)
                      |++ +||+|+||+|+.++|.++.+--.+++..-=|.      .    +...+.    .+-+.+..+      ...+...|
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~i   87 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNLTQYNWL   87 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTSCEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhhhhhcCcc
Confidence            565 99999999999999987322112222111111      1    001111    111111111      12345588


Q ss_pred             EEeccCCchhHhhhc---CCCc-eEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHH---HHHHhcCCCCcc-EEEeC
Q psy6613         207 LDCDTINHPSQLAKT---NLSP-CIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAA---EKLAQCPQEMFD-VILDE  277 (510)
Q Consensus       207 LDID~qg~~lq~lks---~l~P-ivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa---~eLEq~~~~~FD-~VIvN  277 (510)
                      +|--|..  ....+.   .+.| .+||+.. +.++|.+|+..|    .+.+.+|+ .-.   ..+...|...-. ++|..
T Consensus        88 ldGfPr~--~~q~~~l~~~~~~~~vi~L~v-~~~~l~~R~~~r----~e~~~kr~~~y~~~~~~v~~~Y~~~~~l~~idg  160 (189)
T d2ak3a1          88 LDGFPRT--LPQAEALDRAYQIDTVINLNV-PFEVIKQRLTDR----PETVVKRLKAYEAQTEPVLEYYRKKGVLETFSG  160 (189)
T ss_dssp             EESCCCS--HHHHHHHHTTCCCCEEEEEEC-CHHHHHHHHTGS----HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             cccccch--hhHHHHhhhcCcceEEEEEec-cchhhhhhcccc----hHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECC
Confidence            8877766  333332   3454 4455555 578888888654    46677777 222   223223322212 33456


Q ss_pred             CCHHHHHHHHHHHHH
Q psy6613         278 NQLEDACEHIAEYLE  292 (510)
Q Consensus       278 DdLd~A~~eL~~ile  292 (510)
                      ++.++.++++..+|.
T Consensus       161 ~~~~eV~~~I~~~i~  175 (189)
T d2ak3a1         161 TETNKIWPHVYAFLQ  175 (189)
T ss_dssp             SSHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHH
Confidence            778888888886654

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.22  E-value=0.00043  Score=60.16  Aligned_cols=134  Identities=10%  Similarity=0.127  Sum_probs=68.9

Q ss_pred             eE-EecCcCChHHHHHHHhcCCCCceeeecCCCc-------hh----hhhh----hcccHHHHHHHHHcCCeEEEEeccC
Q psy6613         149 II-ITRVTADISLAKRSLMSNPSKRAIMERSNSR-------SS----VLTE----VQTEIERVYELASTLQLVVLDCDTI  212 (510)
Q Consensus       149 pI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR-------~p----Fe~~----I~TslesI~~vi~sGKi~ILDID~q  212 (510)
                      |+ +|++|+||||+.+.|-+.- .+.+.-  |-+       .+    |...    +...-..|.+.+.....+|+.+...
T Consensus         3 I~liG~~GsGKsTi~k~La~~l-~~~~~d--~d~~ie~~~g~~i~~~~~~~g~~~~r~~e~~v~~~l~~~~~~v~~~~g~   79 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL-DLVFLD--SDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGG   79 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH-TCEEEE--HHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh-CCCEEe--cCchhhhHHhhhhhhHHHhhhhccchhhhhhhchhhhhccccccccccc
Confidence            45 9999999999999887611 122111  100       00    1100    0011133444555555666665442


Q ss_pred             CchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCC-----cHHHHHHHH-HHHHHHHhcCCCCccEEEeCC--CHHHHH
Q psy6613         213 NHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKS-----QTRHLNVQM-VAAEKLAQCPQEMFDVILDEN--QLEDAC  284 (510)
Q Consensus       213 g~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~-----~~e~i~kRL-~aa~eLEq~~~~~FD~VIvND--dLd~A~  284 (510)
                      .  ...-...-.-++||+..| .++|.+|+..+...     ..+....+| ..-..+..   ..-|++|..+  +.++++
T Consensus        80 ~--~~~~~l~~~~~vI~L~~s-~~~l~~Rl~~~~~~~Rp~~~~~~~~~~l~~~r~~~Y~---~~ad~~Idt~~~s~eei~  153 (161)
T d1viaa_          80 F--VNVSNLEKAGFCIYLKAD-FEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYE---QKANFILNIENKNIDELL  153 (161)
T ss_dssp             G--GGSTTGGGGCEEEEEECC-HHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHHHH---HHCSEEEECTTCCHHHHH
T ss_pred             h--hhHHHHHhCCeEEEeccc-hHHHHHHHccccccccccccCchHHHHHHHHHHHHHH---hhCCEEEECCCCCHHHHH
Confidence            2  211111113467899875 67888887654321     123333444 33222322   2348888743  688888


Q ss_pred             HHHHHHH
Q psy6613         285 EHIAEYL  291 (510)
Q Consensus       285 ~eL~~il  291 (510)
                      +++.++|
T Consensus       154 ~~I~~~i  160 (161)
T d1viaa_         154 SEIKKVI  160 (161)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8887554

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00075  Score=58.78  Aligned_cols=139  Identities=12%  Similarity=0.068  Sum_probs=72.3

Q ss_pred             CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh----------hhhhhc----ccHHHHHHH----H---HcCCeE
Q psy6613         148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS----------VLTEVQ----TEIERVYEL----A---STLQLV  205 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p----------Fe~~I~----TslesI~~v----i---~sGKi~  205 (510)
                      |++ +||+|+||+|+.++|.++.....++....-|..          +...+.    .+-+.|..+    +   ...+..
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~~~~g~   81 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGF   81 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhcccccccce
Confidence            355 999999999999988873222222221111211          001111    111112111    1   123457


Q ss_pred             EEEeccCCchhHhhhc----CCCc-eEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHH-HH---HHhcCC-----CCc
Q psy6613         206 VLDCDTINHPSQLAKT----NLSP-CIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAA-EK---LAQCPQ-----EMF  271 (510)
Q Consensus       206 ILDID~qg~~lq~lks----~l~P-ivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa-~e---LEq~~~-----~~F  271 (510)
                      |+|.-+..  ......    ...| ++||+.. +.+++.+|+..|.  ..+.+.+|+..- +.   +...|.     ...
T Consensus        82 i~~g~pr~--~~~~~~~~~~~~~~~~vi~L~~-~~~~l~~R~~~~~--~~e~i~~r~~~y~~~~~~v~~~y~~~~~~~~~  156 (179)
T d1e4va1          82 LLDGFPRT--IPQADAMKEAGINVDYVLEFDV-PDELIVDRIVKDD--QEETVRKRLVEYHQMTAPLIGYYSKEAEAGNT  156 (179)
T ss_dssp             EEESCCCS--HHHHHHHHHTTCCCSEEEEEEC-CHHHHHHHHHTTC--SHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSC
T ss_pred             eecccccc--hHHhhhhhhccCCceEEEEecc-chhhhhhhhcccc--cHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence            88887766  333332    3445 4555555 4677888887764  456677777322 21   222211     112


Q ss_pred             cEEEe--CCCHHHHHHHHHHHH
Q psy6613         272 DVILD--ENQLEDACEHIAEYL  291 (510)
Q Consensus       272 D~VIv--NDdLd~A~~eL~~il  291 (510)
                      .++.+  +.++++.++++..+|
T Consensus       157 ~~~~IDa~~~ieeV~~~I~~~l  178 (179)
T d1e4va1         157 KYAKVDGTKPVAEVRADLEKIL  178 (179)
T ss_dssp             EEEEEETTSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHh
Confidence            24444  567888888888655

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.13  E-value=0.00025  Score=62.65  Aligned_cols=86  Identities=12%  Similarity=0.066  Sum_probs=46.2

Q ss_pred             cCCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCC-
Q psy6613         201 TLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVILDEN-  278 (510)
Q Consensus       201 sGKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvND-  278 (510)
                      ....+|++...-.  ...+. ...-++|||..|.-.. .+|+..|...+.+....++ .+....+..  .+.|+||.|+ 
T Consensus       100 ~~~~vi~e~~~~~--~~~~~-~~~d~vI~v~a~~e~r-~~Rl~~R~~~~~~~~~~~~~~q~~~~~~~--~~aD~vI~N~~  173 (191)
T d1uf9a_         100 EAPLVFLEIPLLF--EKGWE-GRLHGTLLVAAPLEER-VRRVMARSGLSREEVLARERAQMPEEEKR--KRATWVLENTG  173 (191)
T ss_dssp             CCSEEEEECTTTT--TTTCG-GGSSEEEEECCCHHHH-HHHHHTTTCCTTHHHHHHHTTSCCHHHHH--HHCSEEECCSS
T ss_pred             ccceEEEEeeccc--ccccc-ccceeEEEEecchhhH-HHHHHhcccchHHHHHHHHHhCCCHHHHH--HhCCEEEECCC
Confidence            4566777765432  11111 2224688998865444 4455555444455555555 111101111  3459999886 


Q ss_pred             CHHHHHHHHHHHHH
Q psy6613         279 QLEDACEHIAEYLE  292 (510)
Q Consensus       279 dLd~A~~eL~~ile  292 (510)
                      +++....++..+++
T Consensus       174 s~~~l~~~v~~il~  187 (191)
T d1uf9a_         174 SLEDLERALKAVLA  187 (191)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            57777777775553

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.09  E-value=0.00099  Score=60.01  Aligned_cols=89  Identities=11%  Similarity=0.160  Sum_probs=51.2

Q ss_pred             CCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCC-C
Q psy6613         202 LQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVILDEN-Q  279 (510)
Q Consensus       202 GKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvND-d  279 (510)
                      ...+|+|+..--   +.-.....-.+|||..|.-..++++++.+|. +.+....++ .+...-+..  +.-|+||.|+ +
T Consensus       105 ~~~vv~e~~ll~---e~~~~~~~d~ii~v~~~~~~r~~R~~~R~~~-s~e~~~~~~~~Q~~~~~k~--~~aD~vI~N~~~  178 (205)
T d1jjva_         105 APYTLFVVPLLI---ENKLTALCDRILVVDVSPQTQLARSAQRDNN-NFEQIQRIMNSQVSQQERL--KWADDVINNDAE  178 (205)
T ss_dssp             SSEEEEECTTTT---TTTCGGGCSEEEEEECCHHHHHHHHC------CHHHHHHHHHHSCCHHHHH--HHCSEEEECCSC
T ss_pred             CCeEEEEecccc---ccchhhhhhheeeecchHHHHHHHHHhcCCc-hHHHHHHHHHhCCCHHHHH--HhCCEEEECCCC
Confidence            346788875422   1111123457899988876666666655554 456666666 221111111  3459999987 6


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy6613         280 LEDACEHIAEYLEAYWR  296 (510)
Q Consensus       280 Ld~A~~eL~~ileai~~  296 (510)
                      ++.+..+|.+.|..++.
T Consensus       179 l~~~~~~l~~~i~~i~~  195 (205)
T d1jjva_         179 LAQNLPHLQQKVLELHQ  195 (205)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            88888888877776654

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.04  E-value=0.0027  Score=55.66  Aligned_cols=143  Identities=14%  Similarity=0.065  Sum_probs=72.9

Q ss_pred             CCCeE-EecCcCChHHHHHHHhcCCCCcee-eecCCCchh------hhhhhc--------ccHHHHHHHH-------HcC
Q psy6613         146 PGMII-ITRVTADISLAKRSLMSNPSKRAI-MERSNSRSS------VLTEVQ--------TEIERVYELA-------STL  202 (510)
Q Consensus       146 ~~RpI-~GPsGvGKsTL~~rLL~~P~~F~~-sVshTTR~p------Fe~~I~--------TslesI~~vi-------~sG  202 (510)
                      .-|+| +||+|+||+|+.++|.++-. |.+ ++..-=|.-      ....+.        .+-+.+..++       ...
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~~~g-~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~~~~~   81 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAKNFC-VCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCK   81 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT-CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGGT
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhC-CeEEeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhhcccccc
Confidence            34676 99999999999998887211 221 111101211      000000        1222222221       234


Q ss_pred             CeEEEEeccCCchhHhhhc--------CCCc-eEEEEeCCCHHHHHHHHHhcC---CCcHHHHHHHH-HHH---HHHHhc
Q psy6613         203 QLVVLDCDTINHPSQLAKT--------NLSP-CIVYLKISSPKVLQRLIKSRG---KSQTRHLNVQM-VAA---EKLAQC  266 (510)
Q Consensus       203 Ki~ILDID~qg~~lq~lks--------~l~P-ivIFIkPPS~e~L~~rLr~Rg---t~~~e~i~kRL-~aa---~eLEq~  266 (510)
                      +..|+|--|..  ......        ...+ ++|++..| .+.+.+|+..|+   ....+.+.+|+ .-.   ..+...
T Consensus        82 ~g~ii~g~pr~--~~qa~~l~~~~~~~~~~~~~~~~l~v~-~~~~~~r~~~r~~~~d~~~e~i~~R~~~y~~~~~p~~~~  158 (190)
T d1ak2a1          82 NGFLLDGFPRT--VRQAEMLDDLMEKRKEKLDSVIEFSIP-DSLLIRRITGRLIHSDDNKKALKIRLEAYHTQTTPLVEY  158 (190)
T ss_dssp             TCEEEESCCCS--HHHHHHHHHHHHHHTCCCCEEEEEECC-HHHHHHHHHTCEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cceeecccccc--hhHHHHHHHHhhhccccccccccccch-HHHHHhhhccCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence            55788877755  222221        2333 55666654 566777777764   24456677776 222   223333


Q ss_pred             CCCCcc-EEEe-CCCHHHHHHHHHHHHH
Q psy6613         267 PQEMFD-VILD-ENQLEDACEHIAEYLE  292 (510)
Q Consensus       267 ~~~~FD-~VIv-NDdLd~A~~eL~~ile  292 (510)
                      |...-. ++|. +.+.++.++++..+|+
T Consensus       159 y~~~~~~~~Id~~~s~eeV~~~I~~~l~  186 (190)
T d1ak2a1         159 YSKRGIHSAIDASQTPDVVFASILAAFS  186 (190)
T ss_dssp             HHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             HHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence            322222 3443 5678888888875543

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.00013  Score=60.59  Aligned_cols=137  Identities=18%  Similarity=0.148  Sum_probs=60.9

Q ss_pred             eE-EecCcCChHHHHHHHhc-CCCCceeeecCCCchh--------hh---h-hhc-ccHHHHHHHHHcCCeEEEEeccCC
Q psy6613         149 II-ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS--------VL---T-EVQ-TEIERVYELASTLQLVVLDCDTIN  213 (510)
Q Consensus       149 pI-~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p--------Fe---~-~I~-TslesI~~vi~sGKi~ILDID~qg  213 (510)
                      |+ +||+|+||||+.+.|-+ ..  +.+.........        +.   . ... .....+......+..++.......
T Consensus         5 I~l~G~~GsGKSTvak~La~~L~--~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (169)
T d1kaga_           5 IFLVGPMGAGKSTIGRQLAQQLN--MEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGGS   82 (169)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHTT--CEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCTTG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC--CCeEeechhHHhhhcccccchhhhhhhhHHHHHHHHHHHhhccccceEeeccchh
Confidence            44 99999999999998877 32  222211111111        00   0 000 222333344455666666655543


Q ss_pred             chhHhhhc--CCCceEEEEeCCCHHHHHHHHHhcCC-------Cc-HHHHHHHHHHHHHHHhcCCCCccEEEeCCC--HH
Q psy6613         214 HPSQLAKT--NLSPCIVYLKISSPKVLQRLIKSRGK-------SQ-TRHLNVQMVAAEKLAQCPQEMFDVILDENQ--LE  281 (510)
Q Consensus       214 ~~lq~lks--~l~PivIFIkPPS~e~L~~rLr~Rgt-------~~-~e~i~kRL~aa~eLEq~~~~~FD~VIvNDd--Ld  281 (510)
                      ........  ....+.+|+.. +..++..|+..+..       .. ...+...+.....+   |....|++|.+++  .+
T Consensus        83 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---y~~~~d~~Idt~~~s~e  158 (169)
T d1kaga_          83 VKSRETRNRLSARGVVVYLET-TIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPL---YEEIADVTIRTDDQSAK  158 (169)
T ss_dssp             GGSHHHHHHHHHHSEEEECCC-CHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHH---HHHHCSEEC-----CHH
T ss_pred             hhhhhhhHHhhhcceeeeccC-cHHHhhhHhhhccccchhcccccchhHHHHHHHHhhhh---hhccCCEEEECCCCCHH
Confidence            11111111  12345555555 56666655433211       11 12222222222222   2245688887654  68


Q ss_pred             HHHHHHHHHH
Q psy6613         282 DACEHIAEYL  291 (510)
Q Consensus       282 ~A~~eL~~il  291 (510)
                      ++++++.++|
T Consensus       159 e~v~~Ii~~l  168 (169)
T d1kaga_         159 VVANQIIHML  168 (169)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            7777777554

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.89  E-value=0.0037  Score=53.12  Aligned_cols=17  Identities=6%  Similarity=-0.191  Sum_probs=15.7

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      .|++|+||||+.+.|.+
T Consensus         7 ~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           7 TGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EECTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            79999999999998876

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.84  E-value=0.0037  Score=52.47  Aligned_cols=26  Identities=8%  Similarity=0.185  Sum_probs=19.7

Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHHhc
Q psy6613         273 VILDENQLEDACEHIAEYLEAYWRAT  298 (510)
Q Consensus       273 ~VIvNDdLd~A~~eL~~ileai~~a~  298 (510)
                      ..|.+.++++-++++.++|+.++..+
T Consensus       160 i~i~~~~~~e~~~~i~~~I~~ll~~~  185 (192)
T d1lw7a2         160 IEIESPSYLDRYNQVKAVIEKVLNEE  185 (192)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHTSCC
T ss_pred             EEeCCCCHHHHHHHHHHHHHHHHCcC
Confidence            44567899999999998887775443

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.72  E-value=0.0042  Score=53.39  Aligned_cols=137  Identities=14%  Similarity=0.042  Sum_probs=66.7

Q ss_pred             CCeE-EecCcCChHHHHHHHhc-CCCCceeee------cCCCchhhhh-----hhc-ccHHHHHHHHHcCCeEEEEeccC
Q psy6613         147 GMII-ITRVTADISLAKRSLMS-NPSKRAIME------RSNSRSSVLT-----EVQ-TEIERVYELASTLQLVVLDCDTI  212 (510)
Q Consensus       147 ~RpI-~GPsGvGKsTL~~rLL~-~P~~F~~sV------shTTR~pFe~-----~I~-TslesI~~vi~sGKi~ILDID~q  212 (510)
                      +|+| +|++||||||+.+.|-+ .--.|.=.-      ...|-..+..     .+. -..+.+..++.....++......
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l~~~fiD~D~~ie~~~g~~i~~~~~~~g~~~~r~~e~~~~~~~~~~~~~vi~~gg~~   81 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGA   81 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCTTG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCeEeeccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhhhccccccccccccccc
Confidence            4677 99999999999988865 111121000      0001011100     000 23345566666666555433221


Q ss_pred             CchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCC------CcHHHHHHHH-HHHHHHHhcCCCCccEEEeC--CCHHH
Q psy6613         213 NHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGK------SQTRHLNVQM-VAAEKLAQCPQEMFDVILDE--NQLED  282 (510)
Q Consensus       213 g~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt------~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvN--DdLd~  282 (510)
                      . .....+. -..-.+||+.. +.+++.+|+.++..      ....+..+++ ..-..+..   ..-|++|..  -+.++
T Consensus        82 ~-~~~~~~~~l~~~~~I~L~~-~~~~~~~R~~~~~~Rpll~~~~~~e~~~~l~~eR~~~Y~---~~ad~~Idt~~~s~~e  156 (165)
T d2iyva1          82 V-TSPGVRAALAGHTVVYLEI-SAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYR---RVATMRVDTNRRNPGA  156 (165)
T ss_dssp             G-GSHHHHHHHTTSCEEEEEC-CHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHH---HHCSEEEECSSSCHHH
T ss_pred             c-ccccccccccccceeeeec-cchhhhhcccccccchhccCccHHHHHHHHHHHHHHHHH---hhCCEEEECCCCCHHH
Confidence            1 0111111 12345678777 46777777754322      1222333444 33333322   345888864  46777


Q ss_pred             HHHHHH
Q psy6613         283 ACEHIA  288 (510)
Q Consensus       283 A~~eL~  288 (510)
                      +++++.
T Consensus       157 i~~~Ii  162 (165)
T d2iyva1         157 VVRHIL  162 (165)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777665

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.0031  Score=56.27  Aligned_cols=72  Identities=14%  Similarity=0.166  Sum_probs=42.9

Q ss_pred             CceEEEEeCCCHHHHHHHHHh----cCCCcHHHHHHHHHHHHHH-Hh---cCCCCccEEEeCC-CHHHHHHHHHHHHHHH
Q psy6613         224 SPCIVYLKISSPKVLQRLIKS----RGKSQTRHLNVQMVAAEKL-AQ---CPQEMFDVILDEN-QLEDACEHIAEYLEAY  294 (510)
Q Consensus       224 ~PivIFIkPPS~e~L~~rLr~----Rgt~~~e~i~kRL~aa~eL-Eq---~~~~~FD~VIvND-dLd~A~~eL~~ileai  294 (510)
                      .-+.|||.+|.-..+++|++.    ||.+.++.+...+...... ++   -+....|+||.|+ |...+++.|.+.|+.+
T Consensus       131 ~D~~i~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~~~~~~~~~~~~~i~p~k~~ADlIi~~~~d~~~~i~~i~~~I~~l  210 (213)
T d1uj2a_         131 FQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDI  210 (213)
T ss_dssp             CSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHH
T ss_pred             hheeeeecCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHHHhhhhHhcCCEEEeCCCccHHHHHHHHHHHHHH
Confidence            357899999887777776643    5654333333333222221 11   1135679999875 5567888888777765


Q ss_pred             H
Q psy6613         295 W  295 (510)
Q Consensus       295 ~  295 (510)
                      .
T Consensus       211 l  211 (213)
T d1uj2a_         211 L  211 (213)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.66  E-value=0.0014  Score=57.35  Aligned_cols=138  Identities=12%  Similarity=-0.018  Sum_probs=69.2

Q ss_pred             CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh----------hhhhhc--------ccHHHHH-HHH---HcCCe
Q psy6613         148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS----------VLTEVQ--------TEIERVY-ELA---STLQL  204 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p----------Fe~~I~--------TslesI~-~vi---~sGKi  204 (510)
                      |+| +||+|+||+|+.+.|.+......++....-|..          +...+.        .....+. ++.   ..++-
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g   83 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNG   83 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGGSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCccccCC
Confidence            555 999999999999999872222222221111110          111111        1111121 122   23556


Q ss_pred             EEEEeccCCchhHh------hhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHH---HHhcCCCCccE
Q psy6613         205 VVLDCDTINHPSQL------AKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEK---LAQCPQEMFDV  273 (510)
Q Consensus       205 ~ILDID~qg~~lq~------lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~e---LEq~~~~~FD~  273 (510)
                      .|+|.-+.. ..+.      +.. ...|..|+..-.+.+++.+|+..+     +.+.+|+ .-.++   +...|.....+
T Consensus        84 ~i~dg~p~~-~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~-----~~~~~r~~~y~~~~~~v~~~y~~~~~~  157 (180)
T d1akya1          84 FILDGFPRT-IPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNA-----DALKKRLAAYHAQTEPIVDFYKKTGIW  157 (180)
T ss_dssp             EEEESCCCS-HHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSH-----HHHHHHHHHHHHHTTHHHHHHHHHTCE
T ss_pred             EeccCccch-hhhHHHHHhhHHHcCCCceeeeecccccchhhhccccc-----ccccchHHHHHHHHHHHHHHHHhcCCE
Confidence            788887755 2221      222 355655555555778888887643     4455665 21111   22222222233


Q ss_pred             EEe--CCCHHHHHHHHHHHH
Q psy6613         274 ILD--ENQLEDACEHIAEYL  291 (510)
Q Consensus       274 VIv--NDdLd~A~~eL~~il  291 (510)
                      +.+  |.+.++.++++.++|
T Consensus       158 ~~Id~~~~~eeV~~~I~~~l  177 (180)
T d1akya1         158 AGVDASQPPATVWADILNKL  177 (180)
T ss_dssp             EEEETTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHH
Confidence            433  567888888877544

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.0029  Score=57.08  Aligned_cols=90  Identities=14%  Similarity=0.198  Sum_probs=51.2

Q ss_pred             CCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCC-C
Q psy6613         202 LQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVILDEN-Q  279 (510)
Q Consensus       202 GKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvND-d  279 (510)
                      ...+++++..--   +..-....-.+|||..|.-..+++ +..|+..+.+....++ .+....+..  ...|+||.|+ +
T Consensus       106 ~~~~~~e~~ll~---e~~~~~~~~~iI~V~a~~e~r~~R-~~~R~~~~~~~~~~~~~~Q~~~~~k~--~~aD~vI~N~~~  179 (208)
T d1vhta_         106 SPYVLWVVPLLV---ENSLYKKANRVLVVDVSPETQLKR-TMQRDDVTREHVEQILAAQATREARL--AVADDVIDNNGA  179 (208)
T ss_dssp             SSEEEEECTTTT---TTTGGGGCSEEEEEECCHHHHHHH-HHHHHTCCHHHHHHHHHHSCCHHHHH--HHCSEEEECSSC
T ss_pred             cCCcceeeeecc---cccccccCCEEEEEeCCHHHHHHH-HHHhhhhhHHHHHHHHHhCCCHHHHH--HhCCEEEECCCC
Confidence            456777664321   111112344678888776555554 4445445555666666 221111111  3459999987 5


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q psy6613         280 LEDACEHIAEYLEAYWRA  297 (510)
Q Consensus       280 Ld~A~~eL~~ileai~~a  297 (510)
                      ++....++..+++.|...
T Consensus       180 le~l~~~v~~l~~~~l~~  197 (208)
T d1vhta_         180 PDAIASDVARLHAHYLQL  197 (208)
T ss_dssp             TTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888888888777766543

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.20  E-value=0.0024  Score=55.26  Aligned_cols=17  Identities=12%  Similarity=0.171  Sum_probs=15.7

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|+||||+.+.|-+
T Consensus         8 ~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           8 VGARGCGMTTVGRELAR   24 (170)
T ss_dssp             ESCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            99999999999998865

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.12  E-value=0.00033  Score=60.65  Aligned_cols=53  Identities=17%  Similarity=0.150  Sum_probs=22.3

Q ss_pred             CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHH-HHHHh-cCCCCccEEE
Q psy6613         222 NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAA-EKLAQ-CPQEMFDVIL  275 (510)
Q Consensus       222 ~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa-~eLEq-~~~~~FD~VI  275 (510)
                      .+.-.+|||.+|.-..+++++..+|. +.++...++ .+. ..++. ...+.+|+||
T Consensus       142 ~~~d~~i~l~~~~e~~~~R~~~r~~~-~~~~~~~~~~~~~~~y~~~~~p~~~ADiIi  197 (198)
T d1rz3a_         142 PFFDFVVYLDCPREIRFARENDQVKQ-NIQKFINRYWKAEDYYLETEEPIKRADVVF  197 (198)
T ss_dssp             GGCSEEEEECCC---------------CHHHHHHHHHHHHHHHHHHHCHHHHCSEEE
T ss_pred             ccceeeeeccCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhcChHHhCCEEe
Confidence            34567899999877777766666554 455666666 322 22222 1124678776

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.98  E-value=0.0057  Score=55.69  Aligned_cols=135  Identities=13%  Similarity=0.088  Sum_probs=72.5

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-CCCCce----eeecCCCchhhh-----------hhhcccHHHHHHHHHcCCeEEEE
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-NPSKRA----IMERSNSRSSVL-----------TEVQTEIERVYELASTLQLVVLD  208 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~F~----~sVshTTR~pFe-----------~~I~TslesI~~vi~sGKi~ILD  208 (510)
                      +.+|  .|.||+|||||.+.|.+ ....+.    ......-|.-|-           +.+..-.........+|..+|++
T Consensus        24 g~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l~~~l~ys~~~r~~~~~r~~~~a~~~~~~g~~viv~  103 (208)
T d1m7ga_          24 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIAITS  103 (208)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHhccCCceeee
Confidence            4555  89999999999998874 211111    111112222210           11112333446677899999999


Q ss_pred             eccCCchhHhh---hc----------CCC-ceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHH------HH--hc
Q psy6613         209 CDTINHPSQLA---KT----------NLS-PCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEK------LA--QC  266 (510)
Q Consensus       209 ID~qg~~lq~l---ks----------~l~-PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~e------LE--q~  266 (510)
                      +....  ....   +.          ... -+.|||.+ +++++.+|...+.       -++.. ..+      +.  ..
T Consensus       104 ~i~~~--~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~-~le~~~~Rd~k~~-------y~~~~-~~~~~~~~gvd~~ye  172 (208)
T d1m7ga_         104 FISPY--RKDRDTARQLHEVATPGEETGLPFVEVYVDV-PVEVAEQRDPKGL-------YKKAR-EGVIKEFTGISAPYE  172 (208)
T ss_dssp             CCCCC--HHHHHHHHHHHHCCCTTCSCCCCEEEEEEEC-CHHHHHTSCTTCH-------HHHHH-HTSSSSCBTTTBCCC
T ss_pred             ccccc--HHHHHHHHHHhhhhccchhcCCceEEEEEcC-CHHHHHHhhcccc-------hhhhh-cCcccceecccccCC
Confidence            87654  2211   11          123 35689998 4666666633210       00100 001      11  11


Q ss_pred             CCCCccEEEeCC--CHHHHHHHHHHHHH
Q psy6613         267 PQEMFDVILDEN--QLEDACEHIAEYLE  292 (510)
Q Consensus       267 ~~~~FD~VIvND--dLd~A~~eL~~ile  292 (510)
                      .+...|++|.++  +++++++++.++|+
T Consensus       173 ~P~~~dl~Idt~~~s~~e~~~~Ii~~L~  200 (208)
T d1m7ga_         173 APANPEVHVKNYELPVQDAVKQIIDYLD  200 (208)
T ss_dssp             CCSSCSEEEECSSSCHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCHHHHHHHHHHHHH
Confidence            245579999754  68888888886664

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.79  E-value=0.0016  Score=54.86  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=18.2

Q ss_pred             CCCeE--EecCcCChHHHHHHHhc
Q psy6613         146 PGMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       146 ~~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      .|.+|  +|++|+||||+.+.|.+
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            45555  89999999999988775

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.49  E-value=0.033  Score=48.65  Aligned_cols=17  Identities=12%  Similarity=-0.199  Sum_probs=15.6

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      .|+-|+||||+++.|.+
T Consensus         6 eG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           6 EGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            79999999999998876

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.28  E-value=0.04  Score=49.44  Aligned_cols=51  Identities=8%  Similarity=0.157  Sum_probs=28.9

Q ss_pred             HHHHHHHH-HcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHh
Q psy6613         192 IERVYELA-STLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKS  244 (510)
Q Consensus       192 lesI~~vi-~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~  244 (510)
                      ...+.+.. .....+++-+....  ...+.. .-.-..|.+.||+.+.+..+++.
T Consensus       143 ~~~~~~~~~~~~~~ii~i~~~~~--~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~  195 (253)
T d1sxja2         143 VGQLAQFCRKTSTPLILICNERN--LPKMRPFDRVCLDIQFRRPDANSIKSRLMT  195 (253)
T ss_dssp             HHHHHHHHHHCSSCEEEEESCTT--SSTTGGGTTTSEEEECCCCCHHHHHHHHHH
T ss_pred             hHHHhhhhccccccccccccccc--ccccccccceeeeeeccccchhHHHHHHHH
Confidence            33444433 33444555544332  223332 22457899999999999988764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.062  Score=47.56  Aligned_cols=72  Identities=15%  Similarity=0.228  Sum_probs=41.6

Q ss_pred             Cc-eEEEEeCCCHHHHHHHHHhcCCCcH----HHHHHHHHHH-HHHHhcCCCC--------ccEEEe--CCCHHHHHHHH
Q psy6613         224 SP-CIVYLKISSPKVLQRLIKSRGKSQT----RHLNVQMVAA-EKLAQCPQEM--------FDVILD--ENQLEDACEHI  287 (510)
Q Consensus       224 ~P-ivIFIkPPS~e~L~~rLr~Rgt~~~----e~i~kRL~aa-~eLEq~~~~~--------FD~VIv--NDdLd~A~~eL  287 (510)
                      .| ++||+.. +.++..+|+++|+...+    .+-..++... ++.-......        .+.+++  |+|+++-.+++
T Consensus       152 ~Pdl~i~Ld~-~pe~~~~Ri~~r~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ID~~~~ie~v~~~i  230 (241)
T d1p5zb_         152 ELDGIIYLQA-TPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESL  230 (241)
T ss_dssp             CCSEEEEEEC-CHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHHHH
T ss_pred             CCceeeeecc-CHHHHHHHHHhhcchhhhcCCHHHHHHHHHHHHHHHHHhhhhhhHhhcCCCCEEEEECCCCHHHHHHHH
Confidence            45 5566665 56777777777665332    3344556333 3322211111        244444  68899999999


Q ss_pred             HHHHHHHHH
Q psy6613         288 AEYLEAYWR  296 (510)
Q Consensus       288 ~~ileai~~  296 (510)
                      .++|+.++.
T Consensus       231 ~~~i~~~l~  239 (241)
T d1p5zb_         231 VEKVKEFLS  239 (241)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            988877754

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=94.38  E-value=0.058  Score=48.19  Aligned_cols=20  Identities=5%  Similarity=0.003  Sum_probs=17.6

Q ss_pred             CeEEecCcCChHHHHHHHhc
Q psy6613         148 MIIITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI~GPsGvGKsTL~~rLL~  167 (510)
                      -++.||+|+|||++.+.|.+
T Consensus        38 ~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHh
Confidence            34599999999999998887

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.04  E-value=0.013  Score=54.68  Aligned_cols=35  Identities=9%  Similarity=-0.025  Sum_probs=22.2

Q ss_pred             eEEecCcCChHHHHHHHhcCCCCceeee-------cCCCchh
Q psy6613         149 IIITRVTADISLAKRSLMSNPSKRAIME-------RSNSRSS  183 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~~P~~F~~sV-------shTTR~p  183 (510)
                      +++|+||||||||.+.|+.......-.|       .|||+..
T Consensus        99 ~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~  140 (225)
T d1u0la2          99 TMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTA  140 (225)
T ss_dssp             EEECSTTSSHHHHHHHHSTTCCCC-------------CCCSC
T ss_pred             EEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccce
Confidence            3499999999999999986322223223       5788865

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.60  E-value=0.0075  Score=56.63  Aligned_cols=35  Identities=9%  Similarity=-0.002  Sum_probs=19.7

Q ss_pred             eEEecCcCChHHHHHHHhcCCCCceeeec-------CCCchh
Q psy6613         149 IIITRVTADISLAKRSLMSNPSKRAIMER-------SNSRSS  183 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~~P~~F~~sVs-------hTTR~p  183 (510)
                      +++|+||||||||.+.|+.....-.-.|+       ||||..
T Consensus       101 vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~  142 (231)
T d1t9ha2         101 VFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV  142 (231)
T ss_dssp             EEEESHHHHHHHHHHHHCC-------------------CCCC
T ss_pred             EEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeE
Confidence            34999999999999999863222333343       777754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.90  E-value=0.02  Score=46.80  Aligned_cols=21  Identities=14%  Similarity=0.127  Sum_probs=19.3

Q ss_pred             CCeE-EecCcCChHHHHHHHhc
Q psy6613         147 GMII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      ||++ +|++|||||||.++|+.
T Consensus         1 ~KI~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           1 GKLLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5777 99999999999999997

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.27  Score=43.52  Aligned_cols=17  Identities=12%  Similarity=-0.011  Sum_probs=16.0

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      -|+-|+||||+++.|.+
T Consensus         8 EG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           8 EGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            69999999999999987

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=92.70  E-value=0.12  Score=46.08  Aligned_cols=19  Identities=0%  Similarity=-0.022  Sum_probs=16.8

Q ss_pred             eEEecCcCChHHHHHHHhc
Q psy6613         149 IIITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~  167 (510)
                      ++.||+|+||||+.+-|.+
T Consensus        39 Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          39 LLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             EEECCTTSCHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            4599999999999998877

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=92.02  E-value=0.033  Score=46.65  Aligned_cols=21  Identities=14%  Similarity=0.126  Sum_probs=19.0

Q ss_pred             CCeE-EecCcCChHHHHHHHhc
Q psy6613         147 GMII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      .|++ +|++|||||||.++|..
T Consensus        14 ~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          14 GKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4676 99999999999999987

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=91.79  E-value=0.032  Score=46.41  Aligned_cols=17  Identities=6%  Similarity=0.028  Sum_probs=16.3

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|+|||||.++|++
T Consensus         8 tG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           8 AAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            89999999999999986

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.58  E-value=0.036  Score=46.80  Aligned_cols=19  Identities=11%  Similarity=0.118  Sum_probs=17.2

Q ss_pred             eE-EecCcCChHHHHHHHhc
Q psy6613         149 II-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI-~GPsGvGKsTL~~rLL~  167 (510)
                      ++ +||+|+|||||.+.|+.
T Consensus         3 i~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcHHHHHHHHHHh
Confidence            44 89999999999999887

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=91.31  E-value=0.062  Score=44.70  Aligned_cols=35  Identities=14%  Similarity=0.067  Sum_probs=25.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc-CCCCceeeecCCCchh
Q psy6613         148 MII-ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS  183 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p  183 (510)
                      +++ +|+++||||||.++|+. ++ ......+.||+..
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~~~-~~~~~~~~~~~~~   39 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGREA-AIVTDIAGTTRDV   39 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSCC-SCCCSSTTCCCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc-eEeecccccccce
Confidence            344 99999999999999997 44 3344456677654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.94  E-value=0.81  Score=43.84  Aligned_cols=17  Identities=18%  Similarity=-0.107  Sum_probs=16.1

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      .||+|||||||..+|+.
T Consensus        57 tG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          57 TGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHH
Confidence            89999999999999986

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=90.80  E-value=0.049  Score=44.65  Aligned_cols=20  Identities=15%  Similarity=-0.012  Sum_probs=17.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|++|||||||.++|..
T Consensus         2 kivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            455 99999999999999987

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.49  E-value=0.077  Score=45.01  Aligned_cols=31  Identities=13%  Similarity=-0.059  Sum_probs=23.6

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS  183 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p  183 (510)
                      +|++|||||||.++|+. ...  ....+.|||..
T Consensus         6 vG~~nvGKSsLin~l~~~~~~--~~~~~g~T~~~   37 (184)
T d2cxxa1           6 AGRSNVGKSTLIYRLTGKKVR--RGKRPGVTRKI   37 (184)
T ss_dssp             EEBTTSSHHHHHHHHHSCCCS--SSSSTTCTTSC
T ss_pred             ECCCCCCHHHHHHHHhCCCce--eeCCCCEeecc
Confidence            99999999999999987 431  22356678765

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.99  E-value=0.08  Score=49.02  Aligned_cols=65  Identities=12%  Similarity=0.183  Sum_probs=36.1

Q ss_pred             CCeEEecCcCChHHHHHHHhcCCCCceeeecCC-CchhhhhhhcccHHHHHHHHHcCCeEEEEecc
Q psy6613         147 GMIIITRVTADISLAKRSLMSNPSKRAIMERSN-SRSSVLTEVQTEIERVYELASTLQLVVLDCDT  211 (510)
Q Consensus       147 ~RpI~GPsGvGKsTL~~rLL~~P~~F~~sVshT-TR~pFe~~I~TslesI~~vi~sGKi~ILDID~  211 (510)
                      +-++.||+|+|||++.+.+...-....+.++.+ -...+...-...+..+.+.++..+.|||-+|=
T Consensus        40 giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~~p~il~iDe  105 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDE  105 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTTHHHHHHHHHHHHHHHTCSEEEEESS
T ss_pred             eeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcccccccHHHHHHHHHHHHHhcCCeEEEehh
Confidence            334499999999999998887222222223211 11111111113445566666777777776664

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.96  E-value=0.058  Score=45.81  Aligned_cols=17  Identities=0%  Similarity=-0.048  Sum_probs=16.2

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|+|||||..+|+.
T Consensus         7 ~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           7 VGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHH
Confidence            89999999999999986

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=89.80  E-value=1  Score=43.20  Aligned_cols=17  Identities=12%  Similarity=-0.179  Sum_probs=16.0

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      .||+|||||||..+|..
T Consensus        60 tG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          60 TGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             EECTTSCHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHH
Confidence            79999999999999986

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.59  E-value=0.093  Score=45.31  Aligned_cols=20  Identities=15%  Similarity=0.013  Sum_probs=18.1

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|+.
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~   25 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTT   25 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            455 99999999999999997

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=89.53  E-value=0.16  Score=47.37  Aligned_cols=20  Identities=5%  Similarity=0.233  Sum_probs=17.4

Q ss_pred             CeEEecCcCChHHHHHHHhc
Q psy6613         148 MIIITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI~GPsGvGKsTL~~rLL~  167 (510)
                      -++.||+|+|||++.+.|.+
T Consensus        48 iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          48 VLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEeeCCCCCCccHHHHHHHH
Confidence            34499999999999999887

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=88.46  E-value=0.1  Score=45.94  Aligned_cols=17  Identities=0%  Similarity=-0.066  Sum_probs=16.3

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||.|+|||||.++|+.
T Consensus         6 ~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           6 VGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             EcCCCCcHHHHHHHHHH
Confidence            89999999999999986

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.42  E-value=0.12  Score=43.56  Aligned_cols=20  Identities=5%  Similarity=0.049  Sum_probs=17.6

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|++|||||||.++|+.
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            344 99999999999999986

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=88.01  E-value=0.11  Score=43.88  Aligned_cols=33  Identities=15%  Similarity=0.075  Sum_probs=17.5

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchh
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS  183 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p  183 (510)
                      +|++|||||||.++|+..-.......++||+..
T Consensus         6 iG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~   38 (171)
T d1mkya1           6 VGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDP   38 (171)
T ss_dssp             ECCTTSSHHHHHHHHHC--------------CC
T ss_pred             ECCCCCCHHHHHHHHhCCCcceecccCceeecc
Confidence            999999999999999872112233456667655

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.38  E-value=0.14  Score=43.06  Aligned_cols=20  Identities=10%  Similarity=0.069  Sum_probs=17.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|.+|||||+|.++|+.
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            344 99999999999999997

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=87.33  E-value=0.12  Score=42.28  Aligned_cols=20  Identities=15%  Similarity=-0.026  Sum_probs=18.0

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|.+|||||||.++++.
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            455 99999999999999987

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.28  E-value=0.16  Score=47.16  Aligned_cols=21  Identities=14%  Similarity=0.155  Sum_probs=17.7

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |.++  +||+|+|||||.+.|..
T Consensus        26 Gei~~liGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          26 GEFVVFVGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHhc
Confidence            4555  99999999999997766

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.24  E-value=0.14  Score=43.11  Aligned_cols=20  Identities=5%  Similarity=-0.003  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|++|||||+|.++|+.
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            344 99999999999999996

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.13  E-value=0.11  Score=44.06  Aligned_cols=17  Identities=6%  Similarity=-0.080  Sum_probs=16.4

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|||||+|.++|+.
T Consensus        12 vG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_          12 LGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            99999999999999987

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=87.10  E-value=0.16  Score=47.29  Aligned_cols=21  Identities=10%  Similarity=0.162  Sum_probs=17.9

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |.++  +||+|+|||||.+.|..
T Consensus        32 Ge~~~liGpsGaGKSTLl~~i~G   54 (239)
T d1v43a3          32 GEFLVLLGPSGCGKTTTLRMIAG   54 (239)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHHc
Confidence            4455  99999999999998876

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=87.09  E-value=0.09  Score=42.80  Aligned_cols=18  Identities=67%  Similarity=0.818  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHhccC
Q psy6613         354 RREKERQALSQLEKARVT  371 (510)
Q Consensus       354 ~~~~e~~a~~~l~~a~~~  371 (510)
                      |+|.|+||+++|++++++
T Consensus         1 r~e~e~qa~~~l~~~~~~   18 (96)
T d1t0ha_           1 RREAERQAQAQLEKAKTK   18 (96)
T ss_dssp             CTHHHHHHHHHHHHHTTS
T ss_pred             CcchhhhhhhhccccCCC
Confidence            689999999999999984

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.02  E-value=0.16  Score=43.23  Aligned_cols=32  Identities=9%  Similarity=0.070  Sum_probs=23.7

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS  183 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p  183 (510)
                      +|.+|||||||.++|+. +. ......+.||+..
T Consensus        11 vG~~~~GKSSLin~l~~~~~-~~~~~~~~tt~~~   43 (178)
T d1wf3a1          11 VGKPNVGKSTLLNNLLGVKV-APISPRPQTTRKR   43 (178)
T ss_dssp             ECSTTSSHHHHHHHHHTSCC-SCCCSSSCCCCSC
T ss_pred             ECCCCCCHHHHHHHHhCCCc-eeecccCCccccc
Confidence            99999999999999997 32 2223356677665

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.85  E-value=0.16  Score=42.76  Aligned_cols=20  Identities=5%  Similarity=-0.129  Sum_probs=17.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|.+|||||+|.++|+.
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            344 99999999999999997

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.82  E-value=0.12  Score=44.00  Aligned_cols=20  Identities=0%  Similarity=-0.147  Sum_probs=18.2

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|.+|||||+|..+++.
T Consensus         4 KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            555 99999999999999997

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.68  E-value=0.14  Score=42.29  Aligned_cols=18  Identities=0%  Similarity=-0.171  Sum_probs=16.1

Q ss_pred             EEecCcCChHHHHHHHhc
Q psy6613         150 IITRVTADISLAKRSLMS  167 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~  167 (510)
                      |.||+|+|||||.+.++.
T Consensus         6 ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           6 LTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             EESCCSSCHHHHHHHHHH
T ss_pred             EECCCCCcHHHHHHHHHH
Confidence            389999999999998875

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=86.54  E-value=0.28  Score=45.10  Aligned_cols=62  Identities=11%  Similarity=0.058  Sum_probs=33.4

Q ss_pred             eEEecCcCChHHHHHHHhc--CCCCceeeecCCCchhh-hhhhcccHHHHHHHHHcCCeEEEEecc
Q psy6613         149 IIITRVTADISLAKRSLMS--NPSKRAIMERSNSRSSV-LTEVQTEIERVYELASTLQLVVLDCDT  211 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~--~P~~F~~sVshTTR~pF-e~~I~TslesI~~vi~sGKi~ILDID~  211 (510)
                      ++.||+|+|||++.+.|.+  +-.-|.+.-+... ..+ +......+..+.+.+.....|||=+|-
T Consensus        44 LL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~-~g~~~~~~~~~i~~if~~A~~~~p~il~iDE  108 (246)
T d1d2na_          44 LLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGFSETAKCQAMKKIFDDAYKSQLSCVVVDD  108 (246)
T ss_dssp             EEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGC-TTCCHHHHHHHHHHHHHHHHTSSEEEEEECC
T ss_pred             EEECcCCCCHHHHHHHHhhccccccccccccccc-ccccccchhhhhhhhhhhhhhcccceeehhh
Confidence            4499999999999998886  3222332222100 000 000001234455556777777776654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.48  E-value=0.17  Score=42.93  Aligned_cols=20  Identities=15%  Similarity=-0.018  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|++|||||+|.++++.
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            344 99999999999999996

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.47  E-value=0.18  Score=42.27  Aligned_cols=19  Identities=16%  Similarity=0.079  Sum_probs=17.4

Q ss_pred             eE-EecCcCChHHHHHHHhc
Q psy6613         149 II-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI-~GPsGvGKsTL~~rLL~  167 (510)
                      ++ +|.+|||||+|.++|+.
T Consensus         5 i~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            44 99999999999999997

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.40  E-value=0.19  Score=44.73  Aligned_cols=61  Identities=5%  Similarity=0.016  Sum_probs=35.9

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCC-chh---hh-------h----hhc-----ccHHHHHHHHHcCCeEEEEe
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNS-RSS---VL-------T----EVQ-----TEIERVYELASTLQLVVLDC  209 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTT-R~p---Fe-------~----~I~-----TslesI~~vi~sGKi~ILDI  209 (510)
                      .||+|+||||+.+.|.. ....|.. ++..+ |..   ..       .    .+.     .....+...+..+...++|.
T Consensus        38 ~GpPGtGKT~la~~la~~~~~~~~~-i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (273)
T d1gvnb_          38 GGQPGSGKTSLRSAIFEETQGNVIV-IDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEG  116 (273)
T ss_dssp             ECCTTSCTHHHHHHHHHHTTTCCEE-ECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHTCCEEECC
T ss_pred             ECCCCCCHHHHHHHHHHHhhcceEE-EecHHHHHHhccCcccchhhhHHHHHHHHhhccchHHHHHHHHHhhCCCCcccc
Confidence            99999999999999987 4333443 32211 110   00       0    000     34444566777888888887


Q ss_pred             ccC
Q psy6613         210 DTI  212 (510)
Q Consensus       210 D~q  212 (510)
                      ...
T Consensus       117 ~~~  119 (273)
T d1gvnb_         117 TGR  119 (273)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.34  E-value=0.17  Score=42.87  Aligned_cols=20  Identities=10%  Similarity=0.077  Sum_probs=18.0

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||+|.++++.
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            455 99999999999999997

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.31  E-value=0.18  Score=45.26  Aligned_cols=17  Identities=0%  Similarity=-0.120  Sum_probs=16.1

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+|||||.+.|..
T Consensus        33 ~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          33 HGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             ECCTTSSHHHHHHHHTT
T ss_pred             ECCCCChHHHHHHHHhc
Confidence            99999999999998887

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=86.23  E-value=1.7  Score=38.31  Aligned_cols=19  Identities=11%  Similarity=-0.108  Sum_probs=15.6

Q ss_pred             eEEecCcCChHHHHHHHhc
Q psy6613         149 IIITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~  167 (510)
                      ++.||.|+||+|+.+.+.+
T Consensus        28 Ll~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          28 LIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEECCTTSCHHHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHHH
Confidence            4499999999999986554

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=86.16  E-value=0.2  Score=46.33  Aligned_cols=19  Identities=5%  Similarity=0.128  Sum_probs=17.2

Q ss_pred             eEEecCcCChHHHHHHHhc
Q psy6613         149 IIITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~  167 (510)
                      ++.||+|+|||++.+.|..
T Consensus        46 Ll~GppGtGKT~la~aia~   64 (247)
T d1ixza_          46 LLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             EEECCTTSSHHHHHHHHHH
T ss_pred             EEecCCCCChhHHHHHHHH
Confidence            4499999999999999887

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=86.01  E-value=0.17  Score=42.96  Aligned_cols=35  Identities=9%  Similarity=0.063  Sum_probs=20.6

Q ss_pred             CeE-EecCcCChHHHHHHHhc-CCCCceeeecCCCchh
Q psy6613         148 MII-ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS  183 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p  183 (510)
                      |+. +|.+|||||||.++|+. +. ......+.||+..
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~~~-~~~~~~~~t~~~~   46 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNKER-ALVSPIPGTTRDP   46 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTT-EEECCCC------
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc-ceeeccccccccc
Confidence            444 99999999999999997 32 2223345566655

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.94  E-value=0.18  Score=42.59  Aligned_cols=20  Identities=10%  Similarity=-0.021  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|.+|||||+|.++|+.
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            344 99999999999999986

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.89  E-value=0.19  Score=42.14  Aligned_cols=20  Identities=10%  Similarity=0.001  Sum_probs=17.9

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|++|||||+|.++|+.
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            455 99999999999999986

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.81  E-value=1.1  Score=40.10  Aligned_cols=19  Identities=11%  Similarity=0.001  Sum_probs=15.9

Q ss_pred             eEEecCcCChHHHHHHHhc
Q psy6613         149 IIITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~  167 (510)
                      ++.||+|+||+++.+.+.+
T Consensus        38 Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          38 LFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEECSTTSSHHHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHHH
Confidence            3489999999999987665

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.65  E-value=0.19  Score=42.28  Aligned_cols=33  Identities=12%  Similarity=0.092  Sum_probs=22.6

Q ss_pred             EecCcCChHHHHHHHhcCCCCceeeecCCCchh
Q psy6613         151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS  183 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p  183 (510)
                      +|.+|||||||.++|....-........||+..
T Consensus        11 iG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~   43 (179)
T d1egaa1          11 VGRPNVGKSTLLNKLLGQKISITSRKAQTTRHR   43 (179)
T ss_dssp             ECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSC
T ss_pred             ECCCCCCHHHHHHHHhCCCceeeccCCCceEEE
Confidence            899999999999999972111122245566655

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.62  E-value=0.16  Score=42.64  Aligned_cols=20  Identities=5%  Similarity=0.056  Sum_probs=17.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|.+|||||+|.++|+.
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            344 99999999999999997

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.60  E-value=0.22  Score=42.50  Aligned_cols=20  Identities=0%  Similarity=-0.076  Sum_probs=17.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|++|||||||.++|+.
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            344 99999999999999997

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=85.57  E-value=0.22  Score=46.40  Aligned_cols=21  Identities=29%  Similarity=0.151  Sum_probs=17.7

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |.++  +||||+|||||.+.|..
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHcC
Confidence            4555  99999999999988766

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=85.53  E-value=0.22  Score=46.37  Aligned_cols=21  Identities=10%  Similarity=0.158  Sum_probs=17.7

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |-++  +||+|+|||||.+.|..
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~g   51 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAG   51 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHhc
Confidence            4455  99999999999998776

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.51  E-value=0.3  Score=38.22  Aligned_cols=38  Identities=16%  Similarity=0.177  Sum_probs=33.7

Q ss_pred             cccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613          70 AVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK  109 (510)
Q Consensus        70 ~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~  109 (510)
                      .|.+++|+.|.|+...+++=|.+|+  ..|..|+||...+
T Consensus        38 dL~vk~GE~ldVIr~t~~~k~LcRN--~~GkYGYV~~~~l   75 (77)
T d1ri9a_          38 DLQVKPGESLEVIQTTDDTKVLCRN--EEGKYGYVLRSYL   75 (77)
T ss_dssp             BCCCCTTCBCEEEEESSSSEEEEEE--TTTEEEEEEGGGS
T ss_pred             cCCcCCCCEEEEEEeCCCCeEEEEc--CCCcEEEEEeeee
Confidence            6889999999999999999999998  4689999997654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.48  E-value=0.22  Score=41.48  Aligned_cols=17  Identities=6%  Similarity=-0.011  Sum_probs=16.4

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|.+|||||+|.++++.
T Consensus         8 iG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           8 IGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            99999999999999997

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=85.39  E-value=0.2  Score=41.72  Aligned_cols=20  Identities=5%  Similarity=0.031  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|++|||||||.++|..
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            455 99999999999999987

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.31  E-value=0.22  Score=43.16  Aligned_cols=17  Identities=12%  Similarity=-0.089  Sum_probs=16.4

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|+.|||||||.++|+.
T Consensus        12 vG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1          12 IGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHhh
Confidence            99999999999999997

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.21  E-value=0.22  Score=42.04  Aligned_cols=20  Identities=5%  Similarity=0.024  Sum_probs=17.9

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|.+|||||+|+++++.
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            455 99999999999999987

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.21  E-value=0.21  Score=42.96  Aligned_cols=20  Identities=5%  Similarity=0.051  Sum_probs=18.0

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|.+|||||+|.++++.
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            455 99999999999999998

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.19  E-value=0.23  Score=45.96  Aligned_cols=21  Identities=10%  Similarity=0.037  Sum_probs=17.0

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |-++  +||||+|||||.+.|..
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          31 GEFVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCcchhhHhccC
Confidence            4455  99999999999986655

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.02  E-value=0.23  Score=41.93  Aligned_cols=20  Identities=15%  Similarity=0.155  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|.+|||||+|.++|+.
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            344 99999999999999997

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.94  E-value=0.2  Score=46.56  Aligned_cols=64  Identities=11%  Similarity=0.154  Sum_probs=34.5

Q ss_pred             CCeEEecCcCChHHHHHHHhc-CCCCceeeecC-CCchhhhhhhcccHHHHHHHHHcCCeEEEEecc
Q psy6613         147 GMIIITRVTADISLAKRSLMS-NPSKRAIMERS-NSRSSVLTEVQTEIERVYELASTLQLVVLDCDT  211 (510)
Q Consensus       147 ~RpI~GPsGvGKsTL~~rLL~-~P~~F~~sVsh-TTR~pFe~~I~TslesI~~vi~sGKi~ILDID~  211 (510)
                      +-++.||+|+|||++.+.|.. ..-.|- .++. .............+..+...+.....|||=+|=
T Consensus        43 giLL~Gp~GtGKT~l~~ala~~~~~~~~-~~~~~~l~~~~~~~~~~~l~~~f~~A~~~~p~il~ide  108 (265)
T d1r7ra3          43 GVLFYGPPGCGKTLLAKAIANECQANFI-SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDE  108 (265)
T ss_dssp             EEEEBCCTTSSHHHHHHHHHHHTTCEEE-EECHHHHHTSCTTTHHHHHHHHHHHHHHTCSEEEEESS
T ss_pred             eEEEECCCCCcchhHHHHHHHHhCCcEE-EEEHHHhhhccccchHHHHHHHHHHHHhcCCcceeHHh
Confidence            334499999999999999987 322222 2221 100000011113345556556667777776554

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.90  E-value=0.23  Score=41.45  Aligned_cols=20  Identities=5%  Similarity=0.082  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|..|||||+|.++|+.
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            344 99999999999999997

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.85  E-value=0.064  Score=44.59  Aligned_cols=32  Identities=9%  Similarity=0.053  Sum_probs=25.0

Q ss_pred             EecCcCChHHHHHHHhc-CCCCceeeecCCCchh
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS  183 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p  183 (510)
                      +|.+|||||||.++|.. .. .+....+.||+.+
T Consensus         6 iG~~n~GKSSLin~l~g~~~-~~~~~~~~~~~~~   38 (160)
T d1xzpa2           6 VGKPNVGKSTLLNRLLNEDR-AIVTDIPGTTRDV   38 (160)
T ss_dssp             ECCHHHHTCHHHHHHHHHTB-CCCCCSSCCSSCS
T ss_pred             ECCCCCCHHHHHHHHhCCCc-eeeeccccccccc
Confidence            99999999999999987 42 3445566777766

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.57  E-value=0.22  Score=41.78  Aligned_cols=20  Identities=15%  Similarity=0.051  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|.+|||||+|.++|+.
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            344 99999999999999996

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=84.45  E-value=0.18  Score=43.03  Aligned_cols=18  Identities=11%  Similarity=-0.027  Sum_probs=16.6

Q ss_pred             EEecCcCChHHHHHHHhc
Q psy6613         150 IITRVTADISLAKRSLMS  167 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~  167 (510)
                      |+|+++||||||.++|..
T Consensus         6 iiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           6 LVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EESSTTSSHHHHHHHSEE
T ss_pred             EECCCCCCHHHHHHHHhC
Confidence            389999999999999987

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.38  E-value=0.2  Score=42.51  Aligned_cols=17  Identities=12%  Similarity=-0.089  Sum_probs=16.4

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|+.|||||||.++|+.
T Consensus        10 vG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1          10 IGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             ESSTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            99999999999999987

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=84.36  E-value=0.19  Score=46.61  Aligned_cols=21  Identities=14%  Similarity=0.112  Sum_probs=17.9

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |-++  +||+|+|||||.+.|..
T Consensus        26 Ge~~~liGpsGaGKSTll~~l~G   48 (229)
T d3d31a2          26 GEYFVILGPTGAGKTLFLELIAG   48 (229)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            4454  99999999999998877

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.34  E-value=0.23  Score=41.85  Aligned_cols=18  Identities=6%  Similarity=0.023  Sum_probs=16.8

Q ss_pred             EEecCcCChHHHHHHHhc
Q psy6613         150 IITRVTADISLAKRSLMS  167 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~  167 (510)
                      |+|.+|||||+|.++|+.
T Consensus        11 vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_          11 LLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EECSTTSSHHHHHHHHHH
T ss_pred             EECCCCcCHHHHHHHHHh
Confidence            399999999999999996

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.33  E-value=0.24  Score=42.63  Aligned_cols=17  Identities=6%  Similarity=-0.105  Sum_probs=16.4

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|.+|||||+|.++|+.
T Consensus        15 vG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          15 VGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhh
Confidence            99999999999999997

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.32  E-value=0.24  Score=41.61  Aligned_cols=20  Identities=0%  Similarity=-0.087  Sum_probs=17.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|.+|||||+|.++++.
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            445 99999999999999997

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.29  E-value=0.23  Score=42.48  Aligned_cols=20  Identities=5%  Similarity=-0.079  Sum_probs=17.9

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|.+|||||+|.++|+.
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            455 99999999999999997

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=84.28  E-value=0.25  Score=42.55  Aligned_cols=20  Identities=25%  Similarity=0.122  Sum_probs=17.6

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      ++. +|++|||||||.+.|..
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHhcC
Confidence            344 99999999999999986

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=84.24  E-value=0.23  Score=41.51  Aligned_cols=20  Identities=10%  Similarity=-0.024  Sum_probs=18.2

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|.+|||||||.++|..
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            565 99999999999999987

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.19  E-value=0.26  Score=41.83  Aligned_cols=20  Identities=5%  Similarity=0.029  Sum_probs=17.9

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|.+|||||+|.++|+.
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            455 99999999999999997

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.13  E-value=0.24  Score=41.58  Aligned_cols=19  Identities=5%  Similarity=0.055  Sum_probs=17.4

Q ss_pred             eE-EecCcCChHHHHHHHhc
Q psy6613         149 II-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI-~GPsGvGKsTL~~rLL~  167 (510)
                      ++ +|.+|||||+|.++++.
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            44 99999999999999997

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.06  E-value=0.27  Score=45.76  Aligned_cols=17  Identities=12%  Similarity=-0.023  Sum_probs=16.0

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+|||||.+.|+.
T Consensus        46 vG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          46 VGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             ECSTTSSHHHHHHHHTT
T ss_pred             ECCCCCcHHHHHHHHhc
Confidence            99999999999998877

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=83.97  E-value=0.25  Score=41.80  Aligned_cols=20  Identities=15%  Similarity=0.061  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|.+|||||+|.++++.
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            444 99999999999999987

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=83.95  E-value=0.26  Score=45.69  Aligned_cols=17  Identities=12%  Similarity=-0.195  Sum_probs=15.9

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+|||||.+-|+.
T Consensus        34 vG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          34 AGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             ECCTTSSHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            99999999999998876

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=83.88  E-value=0.26  Score=41.28  Aligned_cols=20  Identities=5%  Similarity=-0.072  Sum_probs=17.9

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|++|||||+|.++|..
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            455 99999999999999987

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=83.74  E-value=0.22  Score=43.48  Aligned_cols=17  Identities=6%  Similarity=-0.025  Sum_probs=15.8

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      .||+|+||+|+.++|.+
T Consensus         9 dGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           9 DGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             ECSSCSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999987

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=83.74  E-value=0.14  Score=42.70  Aligned_cols=20  Identities=25%  Similarity=0.160  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|+++||||||.++|..
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            455 99999999999999987

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.74  E-value=0.25  Score=46.08  Aligned_cols=17  Identities=12%  Similarity=0.012  Sum_probs=16.0

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +||+|+|||||.+.|..
T Consensus        30 iGpnGaGKSTll~~i~G   46 (240)
T d2onka1          30 LGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             ECCTTSSHHHHHHHHHT
T ss_pred             ECCCCChHHHHHHHHHc
Confidence            99999999999998887

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.70  E-value=0.21  Score=42.65  Aligned_cols=17  Identities=0%  Similarity=-0.052  Sum_probs=16.5

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|.+|||||||+++|+.
T Consensus         8 vG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           8 LGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            99999999999999997

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.67  E-value=0.31  Score=46.09  Aligned_cols=21  Identities=5%  Similarity=0.071  Sum_probs=18.0

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |.++  +||+|+|||||.+.|+.
T Consensus        62 Ge~vaivG~nGsGKSTLl~~i~G   84 (281)
T d1r0wa_          62 GEMLAITGSTGSGKTSLLMLILG   84 (281)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHhC
Confidence            4444  99999999999998887

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=83.63  E-value=0.23  Score=41.78  Aligned_cols=20  Identities=20%  Similarity=0.134  Sum_probs=18.1

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|++|||||||.++|..
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            565 99999999999999987

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=83.49  E-value=0.3  Score=45.17  Aligned_cols=21  Identities=19%  Similarity=0.227  Sum_probs=18.2

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |.++  +||+|+|||||.+.|..
T Consensus        32 Gei~~liGpnGaGKSTl~~~i~G   54 (240)
T d1ji0a_          32 GQIVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            5566  99999999999998876

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.39  E-value=0.28  Score=41.18  Aligned_cols=20  Identities=5%  Similarity=-0.016  Sum_probs=17.9

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|.+|||||+|.++|+.
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            455 99999999999999997

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.23  E-value=0.28  Score=42.25  Aligned_cols=20  Identities=5%  Similarity=-0.079  Sum_probs=17.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|.+|||||+|..+++.
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            345 99999999999999997

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=83.15  E-value=0.31  Score=45.00  Aligned_cols=21  Identities=24%  Similarity=0.211  Sum_probs=18.3

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |.++  +||+|+|||||.+-|..
T Consensus        28 Gei~glvG~nGaGKSTLl~~l~G   50 (238)
T d1vpla_          28 GEIFGLIGPNGAGKTTTLRIIST   50 (238)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            5566  99999999999998876

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=83.13  E-value=0.31  Score=45.13  Aligned_cols=30  Identities=17%  Similarity=0.347  Sum_probs=22.4

Q ss_pred             HHHHHHHHHhhhcCCcEEEEEEecchhhHHh
Q psy6613         434 MQKALFDFLKHRFEGRIIITRVTADISLAKR  464 (510)
Q Consensus       434 m~~al~~~l~~~f~~~i~~~~~~~d~~~~~~  464 (510)
                      .++.+++.|+.-+.|+.+|. ||-|++.++.
T Consensus       174 ~~~~i~~~l~~l~~~~Tvi~-itH~l~~~~~  203 (241)
T d2pmka1         174 SEHVIMRNMHKICKGRTVII-IAHRLSTVKN  203 (241)
T ss_dssp             HHHHHHHHHHHHHTTSEEEE-ECSSGGGGTT
T ss_pred             HHHHHHHHHHHHhCCCEEEE-EECCHHHHHh
Confidence            45667778877778886654 8999988765

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.05  E-value=0.33  Score=43.81  Aligned_cols=17  Identities=12%  Similarity=0.083  Sum_probs=16.4

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      .|..|+||||+.++|++
T Consensus         9 tGFLGaGKTTll~~lL~   25 (222)
T d1nija1           9 TGFLGAGKTTLLRHILN   25 (222)
T ss_dssp             EESSSSSCHHHHHHHHH
T ss_pred             eeCCCCCHHHHHHHHHh
Confidence            89999999999999998

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.89  E-value=0.26  Score=42.16  Aligned_cols=17  Identities=6%  Similarity=0.057  Sum_probs=15.8

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|.+|+||||+.++|.+
T Consensus         8 ~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           8 VGLPARGKTYISKKLTR   24 (213)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            89999999999999875

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=82.82  E-value=0.24  Score=42.72  Aligned_cols=17  Identities=6%  Similarity=-0.120  Sum_probs=16.0

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      .||+|+||+|+.+.|.+
T Consensus         9 ~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           9 DGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            69999999999999988

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.81  E-value=0.29  Score=41.09  Aligned_cols=20  Identities=10%  Similarity=0.109  Sum_probs=17.9

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|.+|||||+|.++++.
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            455 99999999999999997

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.51  E-value=0.36  Score=44.93  Aligned_cols=30  Identities=13%  Similarity=0.180  Sum_probs=21.2

Q ss_pred             HHHHHHHHHhhhcCCcEEEEEEecchhhHHh
Q psy6613         434 MQKALFDFLKHRFEGRIIITRVTADISLAKR  464 (510)
Q Consensus       434 m~~al~~~l~~~f~~~i~~~~~~~d~~~~~~  464 (510)
                      .++.+++.|++-..|+.+| =||-|++.++.
T Consensus       187 ~~~~i~~~l~~l~~~~Tvi-~itH~l~~~~~  216 (253)
T d3b60a1         187 SERAIQAALDELQKNRTSL-VIAHRLSTIEQ  216 (253)
T ss_dssp             HHHHHHHHHHHHHTTSEEE-EECSCGGGTTT
T ss_pred             HHHHHHHHHHHhccCCEEE-EEECCHHHHHh
Confidence            5566777777766787555 48889887754

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=82.39  E-value=0.35  Score=44.29  Aligned_cols=23  Identities=17%  Similarity=0.144  Sum_probs=18.9

Q ss_pred             CCeE--EecCcCChHHHHHHHhc-CC
Q psy6613         147 GMII--ITRVTADISLAKRSLMS-NP  169 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~-~P  169 (510)
                      |-++  +||+|+|||||.+.|.. .|
T Consensus        25 Gei~~iiG~nGaGKSTLl~~l~Gl~~   50 (231)
T d1l7vc_          25 GEILHLVGPNGAGKSTLLARMAGMTS   50 (231)
T ss_dssp             TCEEECBCCTTSSHHHHHHHHHTSCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            5566  99999999999988776 44

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=82.36  E-value=0.26  Score=41.69  Aligned_cols=20  Identities=15%  Similarity=-0.017  Sum_probs=17.9

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||+|.++|..
T Consensus        14 kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            455 99999999999999986

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.36  E-value=0.26  Score=43.52  Aligned_cols=18  Identities=11%  Similarity=-0.042  Sum_probs=16.0

Q ss_pred             EEecCcCChHHHHHHHhc
Q psy6613         150 IITRVTADISLAKRSLMS  167 (510)
Q Consensus       150 I~GPsGvGKsTL~~rLL~  167 (510)
                      +.||+|+||||+.+.|.+
T Consensus        50 l~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          50 FAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EESCTTSSHHHHHHHHHH
T ss_pred             EECCCCCcHHHHHHHHHH
Confidence            399999999999998875

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=82.14  E-value=0.39  Score=42.09  Aligned_cols=23  Identities=4%  Similarity=-0.232  Sum_probs=18.7

Q ss_pred             EecCcCChHHHHHHHhc-CCCCce
Q psy6613         151 ITRVTADISLAKRSLMS-NPSKRA  173 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~-~P~~F~  173 (510)
                      .||+|+|||+|.+++++ .+..+.
T Consensus        35 ~G~~G~GKTsLl~~~~~~~~~~~~   58 (283)
T d2fnaa2          35 LGLRRTGKSSIIKIGINELNLPYI   58 (283)
T ss_dssp             EESTTSSHHHHHHHHHHHHTCCEE
T ss_pred             EcCCCCcHHHHHHHHHHHCCCCeE
Confidence            89999999999999987 444443

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=82.07  E-value=0.36  Score=47.14  Aligned_cols=26  Identities=19%  Similarity=0.185  Sum_probs=19.6

Q ss_pred             eEEecCcCChHHHHHHHhc-CCCCcee
Q psy6613         149 IIITRVTADISLAKRSLMS-NPSKRAI  174 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~-~P~~F~~  174 (510)
                      +++||+|||||+|.++|-+ ....|..
T Consensus        72 LfiGPTGvGKTElAk~LA~~~~~~~ir   98 (364)
T d1um8a_          72 LLIGPTGSGKTLMAQTLAKHLDIPIAI   98 (364)
T ss_dssp             EEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             eeeCCCCccHHHHHHHHHhhcccceee
Confidence            3499999999999999877 4333443

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.99  E-value=0.36  Score=45.10  Aligned_cols=21  Identities=24%  Similarity=0.153  Sum_probs=18.1

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |.++  +||+|+|||||.+.|..
T Consensus        28 GEi~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          28 GDVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHc
Confidence            4565  99999999999998876

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=81.78  E-value=0.29  Score=43.01  Aligned_cols=19  Identities=16%  Similarity=0.249  Sum_probs=16.7

Q ss_pred             eEEecCcCChHHHHHHHhc
Q psy6613         149 IIITRVTADISLAKRSLMS  167 (510)
Q Consensus       149 pI~GPsGvGKsTL~~rLL~  167 (510)
                      +|.||+|+|||++.+.|.+
T Consensus        47 ll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          47 TLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             EEECCTTSSHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            3499999999999998886

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=81.77  E-value=0.32  Score=46.00  Aligned_cols=24  Identities=13%  Similarity=0.176  Sum_probs=19.2

Q ss_pred             CCCCCeEEecCcCChHHHHHHHhc
Q psy6613         144 PSPGMIIITRVTADISLAKRSLMS  167 (510)
Q Consensus       144 Ps~~RpI~GPsGvGKsTL~~rLL~  167 (510)
                      |-.+-+++||+|||||+|.+.|.+
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhh
Confidence            334445599999999999998876

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.76  E-value=0.27  Score=41.68  Aligned_cols=20  Identities=0%  Similarity=0.027  Sum_probs=16.8

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||+|.++|+.
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            344 99999999999999987

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.75  E-value=0.28  Score=41.53  Aligned_cols=24  Identities=8%  Similarity=0.152  Sum_probs=19.7

Q ss_pred             CCCCCeEEecCcCChHHHHHHHhc
Q psy6613         144 PSPGMIIITRVTADISLAKRSLMS  167 (510)
Q Consensus       144 Ps~~RpI~GPsGvGKsTL~~rLL~  167 (510)
                      |.+.-+++|.+|||||+|.++++.
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHh
Confidence            555434499999999999999986

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=81.24  E-value=0.4  Score=44.51  Aligned_cols=21  Identities=14%  Similarity=0.056  Sum_probs=18.2

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |.++  +||+|+|||||.+.|..
T Consensus        30 Gei~~liG~nGaGKSTLl~~i~G   52 (254)
T d1g6ha_          30 GDVTLIIGPNGSGKSTLINVITG   52 (254)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHC
Confidence            5566  99999999999998876

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.74  E-value=0.35  Score=40.77  Aligned_cols=17  Identities=12%  Similarity=-0.046  Sum_probs=16.3

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|.+|||||+|.+++..
T Consensus         7 vG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           7 LGAPGVGKSALARIFGG   23 (168)
T ss_dssp             ECCTTSSHHHHHHHHHT
T ss_pred             ECCCCcCHHHHHHHHhC
Confidence            99999999999999987

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=80.73  E-value=0.48  Score=43.51  Aligned_cols=35  Identities=14%  Similarity=0.103  Sum_probs=24.6

Q ss_pred             CeE-EecCcCChHHHHHHHhcCCCCcee-eecCCCchh
Q psy6613         148 MII-ITRVTADISLAKRSLMSNPSKRAI-MERSNSRSS  183 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~-sVshTTR~p  183 (510)
                      +++ +|.+||||||+.+.|+... .|.. ..+.|||..
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~-~~~vs~~~~~T~~~   70 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER-VVSISPFQSEGPRP   70 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC-CSCCCSSSCCCSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC-ceeecCCCCcceeE
Confidence            454 9999999999999999722 2322 245677754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.70  E-value=0.33  Score=41.31  Aligned_cols=19  Identities=11%  Similarity=0.050  Sum_probs=16.3

Q ss_pred             CeE-EecCcCChHHHHHHHh
Q psy6613         148 MII-ITRVTADISLAKRSLM  166 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL  166 (510)
                      +++ +|.+|||||+|..++.
T Consensus         4 KivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            344 9999999999999983

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.66  E-value=0.4  Score=40.65  Aligned_cols=20  Identities=15%  Similarity=0.019  Sum_probs=17.6

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|.+|||||+|.++|+.
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            344 99999999999999986

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=80.62  E-value=0.28  Score=45.78  Aligned_cols=21  Identities=14%  Similarity=0.069  Sum_probs=17.8

Q ss_pred             CCeE--EecCcCChHHHHHHHhc
Q psy6613         147 GMII--ITRVTADISLAKRSLMS  167 (510)
Q Consensus       147 ~RpI--~GPsGvGKsTL~~rLL~  167 (510)
                      |-++  +||||+||||+.+.|..
T Consensus        31 Ge~~~iiG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2          31 GERFGILGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHc
Confidence            4454  99999999999998876

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.42  E-value=0.45  Score=41.23  Aligned_cols=17  Identities=12%  Similarity=0.120  Sum_probs=16.5

Q ss_pred             EecCcCChHHHHHHHhc
Q psy6613         151 ITRVTADISLAKRSLMS  167 (510)
Q Consensus       151 ~GPsGvGKsTL~~rLL~  167 (510)
                      +|++|||||||.++|+.
T Consensus         6 vG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           6 VGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHc
Confidence            99999999999999997

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=80.38  E-value=0.32  Score=41.29  Aligned_cols=20  Identities=15%  Similarity=-0.039  Sum_probs=17.5

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      +++ +|++|||||||.++|..
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            455 99999999999999875

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.37  E-value=0.38  Score=40.52  Aligned_cols=20  Identities=10%  Similarity=0.104  Sum_probs=17.7

Q ss_pred             CeE-EecCcCChHHHHHHHhc
Q psy6613         148 MII-ITRVTADISLAKRSLMS  167 (510)
Q Consensus       148 RpI-~GPsGvGKsTL~~rLL~  167 (510)
                      |++ +|.+|||||+|.++|+.
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            455 99999999999999986