Psyllid ID: psy6619

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
MSEIVKEALSNAVISTQIVKKLSASPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSVQDVAVRRIQRNVPKLMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIREFLLPWN
cccccccccccccccHHHHHHcccccccccHHHHHHHHHHHcccccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
ccHHHcccccccEEcHHHHHHHHHcccccccHHHHHHHHHHHHccccccEHEEHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
MSEIVKEALSNAVISTQIVKKlsaspqrnhdleynhCAILMNRVLSPVFQIFFrssvlpqleaeRDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKinpllnvhrtdqelqaKSVQDVAVRRIQrnvpklmdvrdWSWWRLYLKinpllnvhrtDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIREFLLPWN
MSEIVKEALSNAVISTQIVKKLSASPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLarkhlaklkvqdvavRCIQRnvrkfmdvrdwsWWRLYLKINPLLNVHRTDQelqaksvqdvavrriqrnvpklmdvrdwsWWRLYLKINPLLNVHRTDQELQAKSEELEALKskleklevernllkqdntrletktkirefllpwn
MSEIVKEALSNAVISTQIVKKLSASPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSVQDVAVRRIQRNVPKLMDVRDWSWWRLYLKINPLLNVHRTDQELQakseelealksklekleVERNLLKQDNTRLETKTKIREFLLPWN
************VISTQIVK*********HDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAE**KKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSVQDVAVRRIQRNVPKLMDVRDWSWWRLYLKINPLLNVHR**************************************************
*SEIVKEALSNAVISTQIVKKLSA******D***NHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKINPLLNVHRT*************************************************************************************************
MSEIVKEALSNAVISTQIVKKLSASPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSVQDVAVRRIQRNVPKLMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIREFLLPWN
*SEIVKEALSNAVISTQIVKKLSASPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSVQDVAVRRIQRNVPKLMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIREFLLPWN
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSEIVKEALSNAVISTQIVKKLSASPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSVQDVAVRRIQRNVPKLMDVRDWSWWRLYLKINPLLNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTKIREFLLPWN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query230 2.2.26 [Sep-21-2011]
Q9JMH9 2050 Unconventional myosin-XVI yes N/A 0.565 0.063 0.335 3e-24
Q27991 1976 Myosin-10 OS=Bos taurus G yes N/A 0.669 0.077 0.406 9e-24
Q9JLT0 1976 Myosin-10 OS=Rattus norve yes N/A 0.669 0.077 0.406 9e-24
P35580 1976 Myosin-10 OS=Homo sapiens yes N/A 0.669 0.077 0.406 9e-24
Q61879 1976 Myosin-10 OS=Mus musculus no N/A 0.669 0.077 0.406 1e-23
P10587 1979 Myosin-11 OS=Gallus gallu no N/A 0.665 0.077 0.394 1e-23
P35748 1972 Myosin-11 OS=Oryctolagus no N/A 0.665 0.077 0.388 4e-23
P35749 1972 Myosin-11 OS=Homo sapiens no N/A 0.665 0.077 0.388 5e-23
Q62812 1961 Myosin-9 OS=Rattus norveg no N/A 0.430 0.050 0.494 1e-21
Q8VDD5 1960 Myosin-9 OS=Mus musculus no N/A 0.430 0.050 0.484 2e-21
>sp|Q9JMH9|MY18A_MOUSE Unconventional myosin-XVIIIa OS=Mus musculus GN=Myo18a PE=1 SV=2 Back     alignment and function desciption
 Score =  111 bits (278), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 97/185 (52%), Gaps = 55/185 (29%)

Query: 35   NHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKV 94
            + C + ++RV       FFR+  L +LE +RD++ S  +  FQA CRGYLAR+H  K K+
Sbjct: 1157 SSCCLGLSRV-------FFRAGTLARLEEQRDEQTSRHLTLFQAACRGYLARQHFKKRKI 1209

Query: 95   QDVAVRCIQRNVRKFMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSVQDVAVRRIQRNV 154
            QD+A+RC+Q+N++K   V+DW WW+L+  + PL+ V  +++++              RN 
Sbjct: 1210 QDLAIRCVQKNIKKNKGVKDWPWWKLFTTVRPLIQVQLSEEQI--------------RN- 1254

Query: 155  PKLMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNT 214
                                             K EE++ L+SKLEK+E ERN L+  + 
Sbjct: 1255 ---------------------------------KDEEIQQLRSKLEKVEKERNELRLSSD 1281

Query: 215  RLETK 219
            RLET+
Sbjct: 1282 RLETR 1286
May be involved in the maintenance of the stromal cell architecture required for cell to cell contact. Isoform 1 may be related to adherence and/or some other functions of mature macrophages. In concert with LURAP1 and CDC42BPA/CDC42BPB, is involved in modulating lamellar actomyosin retrograde flow that is crucial to cell protrusion and migration.
Mus musculus (taxid: 10090)
>sp|Q27991|MYH10_BOVIN Myosin-10 OS=Bos taurus GN=MYH10 PE=2 SV=2 Back     alignment and function description
>sp|Q9JLT0|MYH10_RAT Myosin-10 OS=Rattus norvegicus GN=Myh10 PE=1 SV=1 Back     alignment and function description
>sp|P35580|MYH10_HUMAN Myosin-10 OS=Homo sapiens GN=MYH10 PE=1 SV=3 Back     alignment and function description
>sp|Q61879|MYH10_MOUSE Myosin-10 OS=Mus musculus GN=Myh10 PE=1 SV=2 Back     alignment and function description
>sp|P10587|MYH11_CHICK Myosin-11 OS=Gallus gallus GN=MYH11 PE=1 SV=4 Back     alignment and function description
>sp|P35748|MYH11_RABIT Myosin-11 OS=Oryctolagus cuniculus GN=MYH11 PE=2 SV=2 Back     alignment and function description
>sp|P35749|MYH11_HUMAN Myosin-11 OS=Homo sapiens GN=MYH11 PE=1 SV=3 Back     alignment and function description
>sp|Q62812|MYH9_RAT Myosin-9 OS=Rattus norvegicus GN=Myh9 PE=1 SV=3 Back     alignment and function description
>sp|Q8VDD5|MYH9_MOUSE Myosin-9 OS=Mus musculus GN=Myh9 PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query230
242025142 1601 myosin-18A, putative [Pediculus humanus 0.543 0.078 0.491 2e-36
350420746 2050 PREDICTED: myosin-XVIIIa-like [Bombus im 0.530 0.059 0.482 3e-35
340724088 2046 PREDICTED: myosin-XVIIIa-like isoform 2 0.530 0.059 0.482 3e-35
340724086 1927 PREDICTED: myosin-XVIIIa-like isoform 1 0.530 0.063 0.482 3e-35
380011092 2073 PREDICTED: LOW QUALITY PROTEIN: unconven 0.530 0.058 0.482 6e-35
328781544 2049 PREDICTED: myosin-XVIIIa [Apis mellifera 0.530 0.059 0.482 6e-35
307189804 1073 Myosin-XVIIIa [Camponotus floridanus] 0.530 0.113 0.476 7e-35
332025879 1454 Myosin-XVIIIa [Acromyrmex echinatior] 0.591 0.093 0.440 1e-34
383863348 1879 PREDICTED: unconventional myosin-XVIIIa- 0.530 0.064 0.476 2e-34
345494508 2052 PREDICTED: myosin-XVIIIa isoform 1 [Naso 0.530 0.059 0.458 6e-34
>gi|242025142|ref|XP_002432985.1| myosin-18A, putative [Pediculus humanus corporis] gi|212518494|gb|EEB20247.1| myosin-18A, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/173 (49%), Positives = 106/173 (61%), Gaps = 48/173 (27%)

Query: 47  PVFQIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNV 106
            V Q+FFR+ VL QLE++RD+KL+  +I FQ+RCRGY+ARK LAKLK+QD+AVRCIQRNV
Sbjct: 794 GVTQVFFRAGVLAQLESQRDEKLADLIIRFQSRCRGYIARKKLAKLKIQDLAVRCIQRNV 853

Query: 107 RKFMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSVQDVAVRRIQRNVPKLMDVRDWSWW 166
           RK M VR+W WWRLY+K+ P+LNVHRT++EL AK VQ                       
Sbjct: 854 RKLMQVREWPWWRLYVKVTPILNVHRTEEELTAK-VQ----------------------- 889

Query: 167 RLYLKINPLLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219
                                   ELE +KS LEK+E ERN LK +N +LETK
Sbjct: 890 ------------------------ELETVKSLLEKVESERNQLKLENDKLETK 918

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350420746|ref|XP_003492610.1| PREDICTED: myosin-XVIIIa-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340724088|ref|XP_003400417.1| PREDICTED: myosin-XVIIIa-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
>gi|340724086|ref|XP_003400416.1| PREDICTED: myosin-XVIIIa-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|380011092|ref|XP_003689647.1| PREDICTED: LOW QUALITY PROTEIN: unconventional myosin-XVIIIa-like [Apis florea] Back     alignment and taxonomy information
>gi|328781544|ref|XP_001121819.2| PREDICTED: myosin-XVIIIa [Apis mellifera] Back     alignment and taxonomy information
>gi|307189804|gb|EFN74076.1| Myosin-XVIIIa [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332025879|gb|EGI66035.1| Myosin-XVIIIa [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|383863348|ref|XP_003707143.1| PREDICTED: unconventional myosin-XVIIIa-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|345494508|ref|XP_001604740.2| PREDICTED: myosin-XVIIIa isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query230
FB|FBgn0026059 2194 Mhcl "Myosin heavy chain-like" 0.430 0.045 0.565 3.4e-26
UNIPROTKB|J9P992 1945 MYO18A "Uncharacterized protei 0.630 0.074 0.366 4.1e-22
UNIPROTKB|E2R6X5 2009 MYO18A "Uncharacterized protei 0.630 0.072 0.366 4.3e-22
UNIPROTKB|F6Y037 2054 MYO18A "Uncharacterized protei 0.630 0.070 0.366 4.4e-22
MGI|MGI:2667185 2050 Myo18a "myosin XVIIIA" [Mus mu 0.630 0.070 0.366 9.1e-22
UNIPROTKB|F1LNC1 1716 Myo18a "Protein Myo18a" [Rattu 0.530 0.071 0.371 1.2e-21
UNIPROTKB|F1M5K8 1720 Myo18a "Protein Myo18a" [Rattu 0.530 0.070 0.371 1.2e-21
UNIPROTKB|F1LM91 2000 Myo18a "Protein Myo18a" [Rattu 0.530 0.061 0.371 1.4e-21
UNIPROTKB|E1BKQ6 2055 MYO18A "Uncharacterized protei 0.530 0.059 0.371 1.9e-21
UNIPROTKB|J3KNX9 2054 MYO18A "Unconventional myosin- 0.504 0.056 0.380 3.1e-21
FB|FBgn0026059 Mhcl "Myosin heavy chain-like" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 312 (114.9 bits), Expect = 3.4e-26, P = 3.4e-26
 Identities = 56/99 (56%), Positives = 79/99 (79%)

Query:    50 QIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKF 109
             QI FRS VL +LEA+RD  LS R+I+ QA CRGYLARK +++ +VQ++AVRCIQRNV+ F
Sbjct:  1301 QILFRSGVLSELEAKRDVLLSDRIIQLQAFCRGYLARKKMSQRRVQELAVRCIQRNVKAF 1360

Query:   110 MDVRDWSWWRLYLKINPLLNVHRTDQELQAKSVQDVAVR 148
             + VRDW WWRL +++ PLLNVHRT+++L+  + + + +R
Sbjct:  1361 LAVRDWPWWRLLVRVTPLLNVHRTEEQLKTANEELLMLR 1399
GO:0016459 "myosin complex" evidence=ISS
GO:0042623 "ATPase activity, coupled" evidence=ISS
GO:0003774 "motor activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
UNIPROTKB|J9P992 MYO18A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2R6X5 MYO18A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6Y037 MYO18A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2667185 Myo18a "myosin XVIIIA" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1LNC1 Myo18a "Protein Myo18a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1M5K8 Myo18a "Protein Myo18a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LM91 Myo18a "Protein Myo18a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BKQ6 MYO18A "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J3KNX9 MYO18A "Unconventional myosin-XVIIIa" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query230
COG5022 1463 COG5022, COG5022, Myosin heavy chain [Cytoskeleton 2e-12
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] Back     alignment and domain information 
 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 29/181 (16%)

Query: 51  IFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKH-LAKLKVQDVAVRCIQRNVRKF 109
           +FF++ VL  LE  RD KL +     Q   RG   R+  L  LK     ++ IQ   R  
Sbjct: 726 VFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIK-KIQVIQHGFRLR 784

Query: 110 MDVRDWSWWRLYLKINPLLNVHRTD----------QELQAKSVQ---------------- 143
             V     WRL++K+ PLL++  +            +LQ    +                
Sbjct: 785 RLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKA 844

Query: 144 DVAVRRIQRNVPKLMDVRDWSWWRLYLKINP-LLNVHRTDQELQAKSEELEALKSKLEKL 202
           +V +++  R++             +YL+    +    R  QEL+   + + +LK    +L
Sbjct: 845 EVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLEL 904

Query: 203 E 203
           E
Sbjct: 905 E 905

Length = 1463

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 230
KOG0161|consensus 1930 100.0
COG5022 1463 Myosin heavy chain [Cytoskeleton] 99.93
PTZ00014821 myosin-A; Provisional 99.86
KOG0160|consensus862 99.84
KOG0164|consensus 1001 99.76
KOG0163|consensus 1259 99.64
KOG0162|consensus 1106 99.6
cd01386767 MYSc_type_XVIII Myosin motor domain, type XVIII my 99.33
cd01384674 MYSc_type_XI Myosin motor domain, plant-specific t 99.31
cd01382717 MYSc_type_VI Myosin motor domain, type VI myosins. 99.3
cd01378674 MYSc_type_I Myosin motor domain, type I myosins. M 99.29
cd01383677 MYSc_type_VIII Myosin motor domain, plant-specific 99.26
cd01377693 MYSc_type_II Myosin motor domain, type II myosins. 99.24
cd01380691 MYSc_type_V Myosin motor domain, type V myosins. M 99.22
smart00242677 MYSc Myosin. Large ATPases. ATPase; molecular moto 99.21
cd01381671 MYSc_type_VII Myosin motor domain, type VII myosin 99.18
cd01379653 MYSc_type_III Myosin motor domain, type III myosin 99.17
cd01387677 MYSc_type_XV Myosin motor domain, type XV myosins. 99.17
cd01385692 MYSc_type_IX Myosin motor domain, type IX myosins. 99.13
cd00124679 MYSc Myosin motor domain. This catalytic (head) do 99.1
KOG0161|consensus 1930 98.45
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 97.29
KOG0160|consensus862 97.21
COG5022 1463 Myosin heavy chain [Cytoskeleton] 97.18
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 97.07
smart0001526 IQ Short calmodulin-binding motif containing conse 96.52
smart0001526 IQ Short calmodulin-binding motif containing conse 95.49
KOG2128|consensus 1401 95.1
PTZ00014821 myosin-A; Provisional 94.15
KOG0520|consensus975 92.55
PF00063689 Myosin_head: Myosin head (motor domain); InterPro: 92.26
KOG0163|consensus 1259 89.5
KOG2128|consensus 1401 85.97
cd00632105 Prefoldin_beta Prefoldin beta; Prefoldin is a hexa 84.85
PF0882661 DMPK_coil: DMPK coiled coil domain like; InterPro: 81.88
KOG4229|consensus1062 80.86
>KOG0161|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.8e-32  Score=280.27  Aligned_cols=172  Identities=33%  Similarity=0.538  Sum_probs=148.2

Q ss_pred             ccccccccccccchHHHHhhhC-----------CCCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHHHHHHH
Q psy6619           2 SEIVKEALSNAVISTQIVKKLS-----------ASPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKLS   70 (230)
Q Consensus         2 ~rI~raGyP~R~~~~~F~~R~~-----------~~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R~~~l~   70 (230)
                      |||.|.|||+|++|.+|.+||.           .++..+|..++..+..+.+-|.+|.||||||+||++.||++||..++
T Consensus       694 IRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls  773 (1930)
T KOG0161|consen  694 IRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLS  773 (1930)
T ss_pred             HHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHH
Confidence            7999999999999999999953           12344555666666666777999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHH
Q psy6619          71 SRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSVQDVAVRRI  150 (230)
Q Consensus        71 ~~~~~iQ~~~Rg~l~r~~~~~~~~~~~A~~~IQ~~~R~~~~rr~~~w~rl~~~v~~ll~~~~~~~e~~k~~~~~~a~~~I  150 (230)
                      .+++.+|+.||||++|+.|.+...+..                                                |+.+|
T Consensus       774 ~ii~~fQA~~Rg~l~r~~~~kr~~~~~------------------------------------------------ai~~i  805 (1930)
T KOG0161|consen  774 QIITLFQAAIRGYLARKEFKKRLQQLD------------------------------------------------AIKVI  805 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------HHHHH
Confidence            999999999999999999877664444                                                45555


Q ss_pred             HhhhHHHHHHhchHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619         151 QRNVPKLMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK  221 (230)
Q Consensus       151 Q~~~R~~l~~r~w~w~~l~~kvkpll~~~~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~  221 (230)
                      |+|+|.|+.+++||||+||.+|||||++++.++++.++++++..+++++++.+..++++|.++..++.+..
T Consensus       806 Q~N~r~~~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~  876 (1930)
T KOG0161|consen  806 QRNIRAYLKLRTWPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKN  876 (1930)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666778889999999999999999999999999999999999999999999999998888876654

>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>PTZ00014 myosin-A; Provisional Back     alignment and domain information
>KOG0160|consensus Back     alignment and domain information
>KOG0164|consensus Back     alignment and domain information
>KOG0163|consensus Back     alignment and domain information
>KOG0162|consensus Back     alignment and domain information
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins Back     alignment and domain information
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins Back     alignment and domain information
>cd01378 MYSc_type_I Myosin motor domain, type I myosins Back     alignment and domain information
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>cd01377 MYSc_type_II Myosin motor domain, type II myosins Back     alignment and domain information
>cd01380 MYSc_type_V Myosin motor domain, type V myosins Back     alignment and domain information
>smart00242 MYSc Myosin Back     alignment and domain information
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins Back     alignment and domain information
>cd01379 MYSc_type_III Myosin motor domain, type III myosins Back     alignment and domain information
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins Back     alignment and domain information
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins Back     alignment and domain information
>cd00124 MYSc Myosin motor domain Back     alignment and domain information
>KOG0161|consensus Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>KOG0160|consensus Back     alignment and domain information
>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information
>KOG2128|consensus Back     alignment and domain information
>PTZ00014 myosin-A; Provisional Back     alignment and domain information
>KOG0520|consensus Back     alignment and domain information
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG0163|consensus Back     alignment and domain information
>KOG2128|consensus Back     alignment and domain information
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea Back     alignment and domain information
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure Back     alignment and domain information
>KOG4229|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query230
3j04_A909 Em Structure Of The Heavy Meromyosin Subfragment Of 4e-24
1i84_S 1184 Cryo-Em Structure Of The Heavy Meromyosin Subfragme 3e-23
3dtp_B973 Tarantula Heavy Meromyosin Obtained By Flexible Doc 4e-21
3dtp_A971 Tarantula Heavy Meromyosin Obtained By Flexible Doc 4e-21
1qvi_A840 Crystal Structure Of Scallop Myosin S1 In The Pre-P 2e-18
2os8_A840 Rigor-Like Structures Of Muscle Myosins Reveal Key 5e-18
3i5g_A839 Crystal Structure Of Rigor-Like Squid Myosin S1 Len 5e-18
1kk7_A837 Scallop Myosin In The Near Rigor Conformation Lengt 6e-18
2ec6_A838 Placopecten Striated Muscle Myosin Ii Length = 838 4e-17
1dfl_A831 Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra 5e-17
1b7t_A835 Myosin Digested By Papain Length = 835 5e-17
1dfk_A830 Nucleotide-Free Scallop Myosin S1-Near Rigor State 5e-17
2w4g_M840 Isometrically Contracting Insect Asynchronous Fligh 3e-15
3pn7_A69 Visualizing New Hinges And A Potential Major Source 1e-13
3jtd_A65 Calcium-Free Scallop Myosin Regulatory Domain With 1e-12
1wdc_A64 Scallop Myosin Regulatory Domain Length = 64 1e-12
2mys_A843 Myosin Subfragment-1, Alpha Carbon Coordinates Only 2e-12
1m8q_A840 Molecular Models Of Averaged Rigor Crossbridges Fro 2e-12
1scm_A60 Structure Of The Regulatory Domain Of Scallop Myosi 8e-11
1br1_A820 Smooth Muscle Myosin Motor Domain-Essential Light C 4e-09
2bl0_A63 Physarum Polycephalum Myosin Ii Regulatory Domain L 3e-08
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 909 Back     alignment and structure 
Iteration: 1

 Score =  107 bits (268), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 66/91 (72%)
Query: 50  QIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKF 109
           +IFFR+ VL  LE ERD K++  +I FQA+CRGYLARK  AK + Q  A++ IQRN   +
Sbjct: 772 KIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLTAMKVIQRNCAAY 831
Query: 110 MDVRDWSWWRLYLKINPLLNVHRTDQELQAK 140
           + +R+W WWRL+ K+ PLL V R ++E+QAK
Sbjct: 832 LKLRNWQWWRLFTKVKPLLQVTRQEEEMQAK 862
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment. Length = 1184 Back     alignment and structure
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 973 Back     alignment and structure
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 971 Back     alignment and structure
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840 Back     alignment and structure
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 840 Back     alignment and structure
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839 Back     alignment and structure
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837 Back     alignment and structure
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii Length = 838 Back     alignment and structure
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831 Back     alignment and structure
>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835 Back     alignment and structure
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830 Back     alignment and structure
>pdb|3PN7|A Chain A, Visualizing New Hinges And A Potential Major Source Of Compliance In The Lever Arm Of Myosin Length = 69 Back     alignment and structure
>pdb|3JTD|A Chain A, Calcium-Free Scallop Myosin Regulatory Domain With Elc-D19a Point Mutation Length = 65 Back     alignment and structure
>pdb|1WDC|A Chain A, Scallop Myosin Regulatory Domain Length = 64 Back     alignment and structure
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For The Two Light Chains Length = 843 Back     alignment and structure
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From Tomograms Of Insect Flight Muscle Length = 840 Back     alignment and structure
>pdb|1SCM|A Chain A, Structure Of The Regulatory Domain Of Scallop Myosin At 2.8 Angstroms Resolution Length = 60 Back     alignment and structure
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain Complex With Mgadp.Alf4 Bound At The Active Site Length = 820 Back     alignment and structure
>pdb|2BL0|A Chain A, Physarum Polycephalum Myosin Ii Regulatory Domain Length = 63 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query230
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 8e-27
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 1e-24
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 2e-23
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 3e-22
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 4e-22
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-20
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 2e-20
1w7j_A795 Myosin VA; motor protein, unconventional myosin, m 6e-11
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 7e-05
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 Back     alignment and structure
 Score =  107 bits (268), Expect = 8e-27
 Identities = 38/78 (48%), Positives = 54/78 (69%)

Query: 51  IFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFM 110
           +FF++ VL  LE  RD++LS  +  FQA  RGYL RK   KL+ Q + +  IQRN+RK++
Sbjct: 760 VFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWL 819

Query: 111 DVRDWSWWRLYLKINPLL 128
            +R+W WW+LY K+ PLL
Sbjct: 820 VLRNWQWWKLYSKVKPLL 837
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Length = 64 Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Length = 63 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795 Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query230
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 99.97
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 99.97
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 99.96
4anj_A 1052 Unconventional myosin-VI, green fluorescent prote; 99.91
1w7j_A795 Myosin VA; motor protein, unconventional myosin, m 99.8
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 99.76
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 99.72
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 99.68
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 99.63
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 99.61
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 99.59
2v26_A784 Myosin VI; calmodulin-binding, nucleotide-binding, 99.47
1w9i_A770 Myosin II heavy chain; molecular motor, ATPase, mo 99.42
4db1_A783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 99.41
1lkx_A697 Myosin IE heavy chain; myosin motor domain, lever 99.38
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 99.11
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 98.99
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 98.94
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 98.9
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 98.85
3bas_A89 Myosin heavy chain, striated muscle/general contro 98.39
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 98.21
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 98.17
3gn4_A148 Myosin-VI; unconventional myosin, motility, lever 97.97
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 97.82
4anj_A 1052 Unconventional myosin-VI, green fluorescent prote; 97.34
3gn4_A148 Myosin-VI; unconventional myosin, motility, lever 95.97
2kxw_B27 Sodium channel protein type 2 subunit alpha; actio 94.52
2l53_B31 CAM, voltage-gated sodium channel type V alpha iso 93.81
3bas_A89 Myosin heavy chain, striated muscle/general contro 93.26
2kxw_B27 Sodium channel protein type 2 subunit alpha; actio 89.44
2l53_B31 CAM, voltage-gated sodium channel type V alpha iso 86.24
2eqb_B97 RAB guanine nucleotide exchange factor SEC2; coile 81.74
3nmd_A72 CGMP dependent protein kinase; leucine zipper, coi 80.48
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Back     alignment and structure
Probab=99.97  E-value=8.4e-31  Score=255.42  Aligned_cols=127  Identities=32%  Similarity=0.588  Sum_probs=114.5

Q ss_pred             ccccccccccccchHHHHhhhC---C--------CCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHHHHHHH
Q psy6619           2 SEIVKEALSNAVISTQIVKKLS---A--------SPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKLS   70 (230)
Q Consensus         2 ~rI~raGyP~R~~~~~F~~R~~---~--------~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R~~~l~   70 (230)
                      +||+|+|||+|++|++|++||.   +        +++..|..++..++.+.++|++|+||||||+|+++.||++|+..+.
T Consensus       700 iri~r~Gfp~R~~f~eF~~RY~~L~~~~~~~~~~d~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~~~LE~~r~~~l~  779 (837)
T 1kk8_A          700 IRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLS  779 (837)
T ss_dssp             ----CCCSCEEEEHHHHHHHHGGGSGGGCCC---CHHHHHHHHHHHHTCCGGGEEECSSEEEECTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccccHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHcCCCccceeecCEEEEehhhHHHHHHHHHHHHHH
Confidence            6899999999999999999941   1        3345677888888888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q psy6619          71 SRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKINPLL  128 (230)
Q Consensus        71 ~~~~~iQ~~~Rg~l~r~~~~~~~~~~~A~~~IQ~~~R~~~~rr~~~w~rl~~~v~~ll  128 (230)
                      ..++.||++||||++|++|.+++.++.|+++||++||+|+++++||||++|.+|+|||
T Consensus       780 ~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~w~~l~~kvkpll  837 (837)
T 1kk8_A          780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKLYSKVKPLL  837 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHGGGC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHhhhccCC
Confidence            9999999999999999999999888899999999999999999999999999999985
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa} Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Back     alignment and structure
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Back     alignment and structure
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa} Back     alignment and structure
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa} Back     alignment and structure
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} Back     alignment and structure
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} Back     alignment and structure
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Back     alignment and structure
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} Back     alignment and structure
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} Back     alignment and structure
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 230
d2mysa2794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 1e-26
d1kk8a2789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 1e-26
d1w7ja2730 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick 3e-10
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score =  105 bits (262), Expect = 1e-26
 Identities = 34/79 (43%), Positives = 50/79 (63%)

Query: 50  QIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKF 109
           ++FF++ +L  LE  RD KL+  +   QARCRG+L R     +  +  ++ CIQ NVR F
Sbjct: 715 KVFFKAGLLGLLEEMRDDKLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSF 774

Query: 110 MDVRDWSWWRLYLKINPLL 128
           M+V+ W W +L+ KI PLL
Sbjct: 775 MNVKHWPWMKLFFKIKPLL 793
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query230
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 99.96
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 99.95
d1w7ja2730 Myosin S1, motor domain {Chicken (Gallus gallus), 99.76
d1br2a2710 Myosin S1, motor domain {Chicken (Gallus gallus), 99.29
d1d0xa2712 Myosin S1, motor domain {Dictyostelium discoideum 99.28
d1lkxa_684 Myosin S1, motor domain {Dictyostelium discoideum, 99.19
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 99.08
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 98.98
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=99.96  E-value=6.6e-30  Score=246.82  Aligned_cols=128  Identities=29%  Similarity=0.560  Sum_probs=117.8

Q ss_pred             ccccccccccccchHHHHhhh---CC---------CCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHHHHHH
Q psy6619           2 SEIVKEALSNAVISTQIVKKL---SA---------SPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKL   69 (230)
Q Consensus         2 ~rI~raGyP~R~~~~~F~~R~---~~---------~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R~~~l   69 (230)
                      +||+++|||+|++|++|+.||   .+         +++..|..++..++.+.++|++|+||||||+|++..||+.|++.+
T Consensus       655 vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~~~~d~~~~~~~ll~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~r~~~l  734 (794)
T d2mysa2         655 IRICRKGFPSRVLYADFKQRYRVLNASAIPEGQFMDSKKASEKLLGGGDVDHTQYAFGHTKVFFKAGLLGLLEEMRDDKL  734 (794)
T ss_dssp             HHHHTTSCCCEEEHHHHHHHHGGGTTTC------CCTTHHHHHHTTSSSCCSSSEEEETTEEEECTTHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCccccHHHHHHHHHHhCcccccccccCCHHHHHHHHHHhcCCCcccEEeCCCeEEeCccHHHHHHHHHHHHH
Confidence            689999999999999999994   21         345567778888888888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhH
Q psy6619          70 SSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKINPLLN  129 (230)
Q Consensus        70 ~~~~~~iQ~~~Rg~l~r~~~~~~~~~~~A~~~IQ~~~R~~~~rr~~~w~rl~~~v~~ll~  129 (230)
                      ...++.||++||||++|++|+++..++.|+++||+++|+|++++.|+||++|.+|+|||+
T Consensus       735 ~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~~~~rl~~ki~pll~  794 (794)
T d2mysa2         735 AEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHWPWMKLFFKIKPLLK  794 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhhcC
Confidence            999999999999999999999998888899999999999999999999999999999963
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure