Psyllid ID: psy6627

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
MSRRKLRVKDEALSNAATPTFHKSCEKALLYHKELMISLLFTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLGHIEWLRGCLSDVIYNNIDTLKRARARSSQADAQGKRNRTSNSLW
cccccEEEccccccccccccccccHHHHHHcccccEEEEEEEccccccccEEEEEEcccccEEEEEEEccEEEEEEEcccccEEEEEcccccccccccEEEEEEEEccEEEEEEccccEEEEEcccccEEEcccccEEEEccccccccccccccccccccccEEEccccHHHHHHcccccEEEcccccccccccc
ccHHHcccccccHHccccccccHHHccccccccEEEEEEEEEEEccccccEEEEEccccccEEEEEEEcEEEEEEEEcccccEEEEEcccccccccccEEEEEEEEccEEEEEEcccccEEEEccccccccEcccEEEEccccccccccccccccccccEEEEEEccccHHHHHHHccccEEEEccccccccccc
msrrklrvkdealsnaatptfHKSCEKALLYHKELMISLLftspltkrsdAILFLSAGKIDYCLLRLESGRLKVhinlgagdteistprglrlddlLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYglfiggqgdfTELFLGHIEWLRGCLSDVIYNNIDTLKRARARssqadaqgkrnrtsnslw
msrrklrvkdealsnaatptfhkSCEKALLYHKELMISLLFTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINlgagdteistprgLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLGHIEWLRGCLSDVIYNNIDTLKRArarssqadaqgkrnrtsnslw
MSRRKLRVKDEALSNAATPTFHKSCEKALLYHKELMISLLFTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLGHIEWLRGCLSDVIYNNIDTLKrararssqadaqGKRNRTSNSLW
*******************TFHKSCEKALLYHKELMISLLFTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLGHIEWLRGCLSDVIYNNIDTL************************
********KDEALSNAATPTFHKSCEKALLYHKELMISLLFTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVDLIHTT*******F*ELNIHYGLFIGGQGDFTELFLGHIEWLRGCLSDVIYNNIDTLK****************RTSNSLW
***********ALSNAATPTFHKSCEKALLYHKELMISLLFTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLGHIEWLRGCLSDVIYNNIDTLKR**********************
*****LRVKDEALSNAATPTFHKSCEKALLYHKELMISLLFTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLGHIEWLRGCLSDVIYNNIDTLKRARARSSQADAQGKR********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSRRKLRVKDEALSNAATPTFHKSCEKALLYHKELMISLLFTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLGHIEWLRGCLSDVIYNNIDTLKRARARSSQADAQGKRNRTSNSLW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query195 2.2.26 [Sep-21-2011]
Q00657 2326 Chondroitin sulfate prote no N/A 0.646 0.054 0.359 3e-13
Q8VHY0 2327 Chondroitin sulfate prote yes N/A 0.646 0.054 0.351 2e-11
P97846 1381 Contactin-associated prot no N/A 0.697 0.098 0.335 1e-10
Q6UVK1 2322 Chondroitin sulfate prote yes N/A 0.579 0.048 0.370 2e-10
Q0V8S9 1305 Contactin-associated prot no N/A 0.723 0.108 0.324 2e-10
O54991 1385 Contactin-associated prot no N/A 0.702 0.098 0.331 3e-10
P78357 1384 Contactin-associated prot no N/A 0.707 0.099 0.328 4e-10
Q8WYK1 1306 Contactin-associated prot no N/A 0.692 0.103 0.331 6e-10
Q0V8T0 1305 Contactin-associated prot no N/A 0.692 0.103 0.312 6e-09
Q0V8T4 1307 Contactin-associated prot no N/A 0.692 0.103 0.312 2e-08
>sp|Q00657|CSPG4_RAT Chondroitin sulfate proteoglycan 4 OS=Rattus norvegicus GN=Cspg4 PE=1 SV=2 Back     alignment and function desciption
 Score = 74.7 bits (182), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/128 (35%), Positives = 69/128 (53%), Gaps = 2/128 (1%)

Query: 46  TKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTR 105
           T + +A+L L+AG+ D+ LL+L+SG L+V + LG  +  + TP    L D   H+V +T 
Sbjct: 57  TSQPEALLLLAAGQTDHLLLQLQSGHLQVRLALGQNELSLQTPADTVLSDSTTHTVVLTV 116

Query: 106 IEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLGHIEW-LRGCLSDVI 164
             +   L+VD +  T   +P K   L + YGLF+G  G     +L  I   LRGCL   I
Sbjct: 117 SNSWAVLSVDGVLNTSAPIP-KASHLKVPYGLFVGSSGSLDLPYLKGISRPLRGCLHSAI 175

Query: 165 YNNIDTLK 172
            N  + L+
Sbjct: 176 LNGRNLLR 183
Proteoglycan playing a role in cell proliferation and migration which stimulates endothelial cells motility during microvascular morphogenesis. May also inhibit neurite outgrowth and growth cone collapse during axon regeneration. Cell surface receptor for collagen alpha 2(VI) which may confer cells ability to migrate on that substrate. Binds through its extracellular N-terminus growth factors, extracellular matrix proteases modulating their activity. May regulate MPP16-dependent degradation and invasion of type I collagen participating in melanoma cells invasion properties. May modulate the plasminogen system by enhancing plasminogen activation and inhibiting angiostatin. Functions also as a signal transducing protein by binding through its cytoplasmic C-terminus scaffolding and signaling proteins. May promote retraction fiber formation and cell polarization through Rho GTPase activation. May stimulate alpha-4, beta-1 integrin-mediated adhesion and spreading by recruiting and activating a signaling cascade through CDC42, ACK1 and BCAR1. May activate FAK and ERK1/ERK2 signaling cascades.
Rattus norvegicus (taxid: 10116)
>sp|Q8VHY0|CSPG4_MOUSE Chondroitin sulfate proteoglycan 4 OS=Mus musculus GN=Cspg4 PE=1 SV=3 Back     alignment and function description
>sp|P97846|CNTP1_RAT Contactin-associated protein 1 OS=Rattus norvegicus GN=Cntnap1 PE=1 SV=1 Back     alignment and function description
>sp|Q6UVK1|CSPG4_HUMAN Chondroitin sulfate proteoglycan 4 OS=Homo sapiens GN=CSPG4 PE=1 SV=2 Back     alignment and function description
>sp|Q0V8S9|CNTP5_CHICK Contactin-associated protein-like 5 OS=Gallus gallus GN=CNTNAP5 PE=2 SV=1 Back     alignment and function description
>sp|O54991|CNTP1_MOUSE Contactin-associated protein 1 OS=Mus musculus GN=Cntnap1 PE=1 SV=2 Back     alignment and function description
>sp|P78357|CNTP1_HUMAN Contactin-associated protein 1 OS=Homo sapiens GN=CNTNAP1 PE=1 SV=1 Back     alignment and function description
>sp|Q8WYK1|CNTP5_HUMAN Contactin-associated protein-like 5 OS=Homo sapiens GN=CNTNAP5 PE=2 SV=1 Back     alignment and function description
>sp|Q0V8T0|CNTP5_CANFA Contactin-associated protein-like 5 OS=Canis familiaris GN=CNTNAP5 PE=2 SV=1 Back     alignment and function description
>sp|Q0V8T4|CTP5C_RAT Contactin-associated protein like 5-3 OS=Rattus norvegicus GN=Cntnap5c PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query195
242009610 2347 Chondroitin sulfate proteoglycan 4 precu 0.717 0.059 0.657 3e-49
380015398 2007 PREDICTED: chondroitin sulfate proteogly 0.707 0.068 0.615 1e-48
328792339 2349 PREDICTED: chondroitin sulfate proteogly 0.707 0.058 0.615 2e-48
340709029 2348 PREDICTED: LOW QUALITY PROTEIN: chondroi 0.646 0.053 0.642 3e-46
350419380 2348 PREDICTED: chondroitin sulfate proteogly 0.646 0.053 0.642 4e-46
383864887 2349 PREDICTED: chondroitin sulfate proteogly 0.646 0.053 0.634 9e-46
307188052 2416 Chondroitin sulfate proteoglycan 4 [Camp 0.646 0.052 0.634 1e-45
307206461 2351 Chondroitin sulfate proteoglycan 4 [Harp 0.646 0.053 0.626 3e-44
328716076 2342 PREDICTED: chondroitin sulfate proteogly 0.712 0.059 0.628 4e-44
345496825 2370 PREDICTED: chondroitin sulfate proteogly 0.861 0.070 0.511 3e-43
>gi|242009610|ref|XP_002425576.1| Chondroitin sulfate proteoglycan 4 precursor, putative [Pediculus humanus corporis] gi|212509455|gb|EEB12838.1| Chondroitin sulfate proteoglycan 4 precursor, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 92/140 (65%), Positives = 110/140 (78%)

Query: 46  TKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTR 105
           TKRSD+ L L AG+ DYC++RLE G+LK+ INLGAG++EIS+ RGL+LDDL WH V +TR
Sbjct: 35  TKRSDSFLLLVAGRTDYCIIRLEFGKLKIRINLGAGESEISSARGLKLDDLNWHEVFITR 94

Query: 106 IEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLGHIEWLRGCLSDVIY 165
            +A   L VD IH T EKLPG+F+ELNIHYG+F+G QGDFTELFLGH E LRGCLS V Y
Sbjct: 95  RDAEFVLVVDNIHITKEKLPGRFYELNIHYGIFLGSQGDFTELFLGHHESLRGCLSHVDY 154

Query: 166 NNIDTLKRARARSSQADAQG 185
           N I+ LK+AR R  Q D QG
Sbjct: 155 NGINVLKKARERIGQVDVQG 174

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380015398|ref|XP_003691689.1| PREDICTED: chondroitin sulfate proteoglycan 4-like [Apis florea] Back     alignment and taxonomy information
>gi|328792339|ref|XP_396231.3| PREDICTED: chondroitin sulfate proteoglycan 4 [Apis mellifera] Back     alignment and taxonomy information
>gi|340709029|ref|XP_003393118.1| PREDICTED: LOW QUALITY PROTEIN: chondroitin sulfate proteoglycan 4-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350419380|ref|XP_003492161.1| PREDICTED: chondroitin sulfate proteoglycan 4-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|383864887|ref|XP_003707909.1| PREDICTED: chondroitin sulfate proteoglycan 4 [Megachile rotundata] Back     alignment and taxonomy information
>gi|307188052|gb|EFN72884.1| Chondroitin sulfate proteoglycan 4 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|307206461|gb|EFN84495.1| Chondroitin sulfate proteoglycan 4 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|328716076|ref|XP_001951117.2| PREDICTED: chondroitin sulfate proteoglycan 4-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|345496825|ref|XP_001599803.2| PREDICTED: chondroitin sulfate proteoglycan 4-like [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query195
FB|FBgn0032683 2381 kon "kon-tiki" [Drosophila mel 0.712 0.058 0.435 1.6e-25
UNIPROTKB|F1NG70 2308 Gga.32252 "Uncharacterized pro 0.646 0.054 0.338 8.5e-15
UNIPROTKB|Q6UVK1 2322 CSPG4 "Chondroitin sulfate pro 0.641 0.053 0.375 7e-13
RGD|619942 2326 Cspg4 "chondroitin sulfate pro 0.646 0.054 0.359 7e-13
UNIPROTKB|F1MY84 2319 CSPG4 "Uncharacterized protein 0.635 0.053 0.356 1.3e-11
MGI|MGI:2153093 2327 Cspg4 "chondroitin sulfate pro 0.646 0.054 0.351 2.7e-11
UNIPROTKB|F1MYL5 1191 F1MYL5 "Uncharacterized protei 0.779 0.127 0.321 3.9e-10
UNIPROTKB|H7C3D6206 NRXN2 "Neurexin-2" [Homo sapie 0.6 0.567 0.366 4.1e-10
UNIPROTKB|Q8WYK1 1306 CNTNAP5 "Contactin-associated 0.661 0.098 0.344 7.1e-10
UNIPROTKB|Q0V8S9 1305 CNTNAP5 "Contactin-associated 0.723 0.108 0.315 9.1e-10
FB|FBgn0032683 kon "kon-tiki" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 306 (112.8 bits), Expect = 1.6e-25, P = 1.6e-25
 Identities = 61/140 (43%), Positives = 84/140 (60%)

Query:    46 TKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTR 105
             T++ +A LFL+AG+ DYCLLRLESG +     +     ++ +P+  +L+DL WH V V R
Sbjct:    57 TRQENAFLFLAAGRTDYCLLRLESGLISFSYKIERDVVQLRSPKKQKLNDLEWHDVAVQR 116

Query:   106 IEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLGHIEWLRGCLSDVIY 165
              E N+TL VD  +   ++LPG    LNIH+G F+GG GDFT  FL  +   RGC+SDV Y
Sbjct:   117 FENNITLQVDG-YIMRKQLPGDLAALNIHFGTFLGGVGDFTAEFLDDVIGFRGCISDVFY 175

Query:   166 NNIDTLKXXXXXXXXXXXXG 185
             NNI+ +K            G
Sbjct:   176 NNINIIKRAKDRTSHTTSTG 195
GO:0051491 "positive regulation of filopodium assembly" evidence=IMP
GO:0007517 "muscle organ development" evidence=IMP
GO:0051286 "cell tip" evidence=IDA
GO:0016203 "muscle attachment" evidence=IGI;IMP
GO:0005515 "protein binding" evidence=IPI
GO:0022008 "neurogenesis" evidence=IMP
UNIPROTKB|F1NG70 Gga.32252 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q6UVK1 CSPG4 "Chondroitin sulfate proteoglycan 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|619942 Cspg4 "chondroitin sulfate proteoglycan 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MY84 CSPG4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2153093 Cspg4 "chondroitin sulfate proteoglycan 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MYL5 F1MYL5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|H7C3D6 NRXN2 "Neurexin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WYK1 CNTNAP5 "Contactin-associated protein-like 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q0V8S9 CNTNAP5 "Contactin-associated protein-like 5" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
smart00282132 smart00282, LamG, Laminin G domain 2e-21
pfam02210124 pfam02210, Laminin_G_2, Laminin G domain 2e-18
cd00110151 cd00110, LamG, Laminin G domain; Laminin G-like do 3e-17
pfam00054131 pfam00054, Laminin_G_1, Laminin G domain 4e-14
>gnl|CDD|214598 smart00282, LamG, Laminin G domain Back     alignment and domain information 
 Score = 85.1 bits (211), Expect = 2e-21
 Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 7/134 (5%)

Query: 37  ISLLFTSPLTKRSDAILF--LSAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLD 94
           IS  F    T   + +L    S G  DY  L L  GRL +  +LG+G   +++     L+
Sbjct: 2   ISFSFR---TTSPNGLLLYAGSKGGGDYLALELRDGRLVLRYDLGSGPARLTSDPT-PLN 57

Query: 95  DLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLGHI- 153
           D  WH V V R   +VTL+VD  +    + PG    LN+   L++GG  +  +L    + 
Sbjct: 58  DGQWHRVAVERNGRSVTLSVDGGNRVSGESPGGLTILNLDGPLYLGGLPEDLKLPPLPVT 117

Query: 154 EWLRGCLSDVIYNN 167
              RGC+ ++  N 
Sbjct: 118 PGFRGCIRNLKVNG 131

Length = 132
>gnl|CDD|216930 pfam02210, Laminin_G_2, Laminin G domain Back     alignment and domain information
>gnl|CDD|238058 cd00110, LamG, Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans Back     alignment and domain information
>gnl|CDD|215681 pfam00054, Laminin_G_1, Laminin G domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 195
PF00054131 Laminin_G_1: Laminin G domain; InterPro: IPR012679 99.94
smart00282135 LamG Laminin G domain. 99.94
cd00110151 LamG Laminin G domain; Laminin G-like domains are 99.92
KOG3514|consensus 1591 99.92
PF02210128 Laminin_G_2: Laminin G domain; InterPro: IPR012680 99.91
KOG3516|consensus 1306 99.87
KOG3516|consensus 1306 99.85
KOG3514|consensus 1591 99.83
KOG4289|consensus 2531 99.8
KOG1219|consensus 4289 99.79
KOG4289|consensus 2531 99.38
smart00210184 TSPN Thrombospondin N-terminal -like domains. Hepa 99.2
PF13385157 Laminin_G_3: Concanavalin A-like lectin/glucanases 98.6
smart00159206 PTX Pentraxin / C-reactive protein / pentaxin fami 98.42
cd00152201 PTX Pentraxins are plasma proteins characterized b 98.32
PF00354195 Pentaxin: Pentaxin family; InterPro: IPR001759 Pen 98.19
PF02973190 Sialidase: Sialidase, N-terminal domain; InterPro: 97.87
smart00560133 LamGL LamG-like jellyroll fold domain. 97.41
KOG1834|consensus 952 96.22
KOG3509|consensus 964 95.65
PF06439185 DUF1080: Domain of Unknown Function (DUF1080); Int 94.36
KOG3546|consensus 1167 92.97
KOG1836|consensus1705 90.71
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function [] Back     alignment and domain information 
Probab=99.94  E-value=4.5e-26  Score=164.61  Aligned_cols=124  Identities=26%  Similarity=0.416  Sum_probs=101.5

Q ss_pred             CCCCCCeEEEEEcCC--CCEEEEEEECCEEEEEEEcCCCeeEEeCCCcccCCCCCcEEEEEEEECCEEEEEECCcceeeE
Q psy6627          45 LTKRSDAILFLSAGK--IDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFE  122 (195)
Q Consensus        45 rT~~~~glL~~~~~~--~~~l~l~l~~g~l~~~~~~g~~~~~~~~~~~~~i~dg~wh~V~l~~~~~~~~L~vd~~~~~~~  122 (195)
                      ||..++|+|||.+..  .||++|+|.+|++.++++.|.+...+..  +..++||+||+|++.|....+.|+||+......
T Consensus         2 rT~~~~Gllly~g~~~~~dfial~L~~G~l~~~~~~G~~~~~~~~--~~~i~dg~wh~v~~~r~~~~~~L~Vd~~~~~~~   79 (131)
T PF00054_consen    2 RTSEPNGLLLYLGSKDGKDFIALELRDGRLEFRYNLGSGPASLRS--PQKINDGKWHTVSVSRNGRNGSLSVDGEEVVTG   79 (131)
T ss_dssp             EESSSSEEEEEEESSTTSSEEEEEEETTEEEEEEESSSEEEEEEE--SSETTSSSEEEEEEEEETTEEEEEETTSEEEEE
T ss_pred             ccCCCCceEEECCcCCCCCEEEEEEECCEEEEEEeCCCccceecC--CCccCCCcceEEEEEEcCcEEEEEECCccceee
Confidence            999999999999754  6899999999999999999998777765  445999999999999999999999999665444


Q ss_pred             EcCCcee-eeecCCcEEEcccCCCCcc--ccCCCcCceeEeccEEECCcch
Q psy6627         123 KLPGKFF-ELNIHYGLFIGGQGDFTEL--FLGHIEWLRGCLSDVIYNNIDT  170 (195)
Q Consensus       123 ~~~~~~~-~l~~~~~i~iGg~~~~~~~--~~~~~~~F~GCi~~v~in~~~l  170 (195)
                      ..+.... .++....+||||+|.....  ......+|.|||+++.+|++++
T Consensus        80 ~s~~~~~~~l~~~~~lyvGG~p~~~~~~~~~~~~~~f~GCi~~~~in~~~l  130 (131)
T PF00054_consen   80 ESPSGATQSLDVDGPLYVGGLPSSSSRPRPLPISPGFKGCIRNLSINGKPL  130 (131)
T ss_dssp             EECSSSSSSCEECSEEEESSSSTTTGCGSSCSCCSB-EEEEEEEEETTEEC
T ss_pred             ecCCccccccccccCEEEccCCchhhcccccccCCCeeEEEEEeEECCEEC
Confidence            4443333 4778888999999933322  2367789999999999999864

The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
>smart00282 LamG Laminin G domain Back     alignment and domain information
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans Back     alignment and domain information
>KOG3514|consensus Back     alignment and domain information
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function [] Back     alignment and domain information
>KOG3516|consensus Back     alignment and domain information
>KOG3516|consensus Back     alignment and domain information
>KOG3514|consensus Back     alignment and domain information
>KOG4289|consensus Back     alignment and domain information
>KOG1219|consensus Back     alignment and domain information
>KOG4289|consensus Back     alignment and domain information
>smart00210 TSPN Thrombospondin N-terminal -like domains Back     alignment and domain information
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A Back     alignment and domain information
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family Back     alignment and domain information
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity Back     alignment and domain information
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits Back     alignment and domain information
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3 Back     alignment and domain information
>smart00560 LamGL LamG-like jellyroll fold domain Back     alignment and domain information
>KOG1834|consensus Back     alignment and domain information
>KOG3509|consensus Back     alignment and domain information
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function Back     alignment and domain information
>KOG3546|consensus Back     alignment and domain information
>KOG1836|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
3r05_A 1254 Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), 5e-09
3qcw_A 1245 Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), 5e-09
2h0b_A184 Crystal Structure Of The Second LnsLG DOMAIN FROM N 3e-08
3poy_A 1019 Crystal Structure Of The Alpha-Neurexin-1 Ectodomai 4e-08
2jd4_A 383 Mouse Laminin Alpha1 Chain, Domains Lg4-5 Length = 8e-07
2r16_A182 Crystal Structure Of Bovine Neurexin 1 Alpha LnsLG 7e-05
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With Splice Insert Ss3 Length = 1254 Back     alignment and structure 
Iteration: 1

 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 78/183 (42%), Gaps = 21/183 (11%)
Query: 8   VKDEALSNAATPTFH-KSCEK------ALLYHKELMISLLFTSPLTKRSDAI-------- 52
           V D+A+ + +   F  K C +      A     E     L  +P+   SD I        
Sbjct: 207 VDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQ 266
Query: 53  ---LFLSAGK-IDYCLLRLESGRLKVHINLGAGDTE-ISTPRGLRLDDLLWHSVNVTRIE 107
              L L  GK  DY  L L++G + + INLG+G  E +  P   + +D  WH V VTR  
Sbjct: 267 RNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNL 326
Query: 108 ANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLGHIE-WLRGCLSDVIYN 166
             VT++VD I TT       +  L      ++GG     +L    +     GCL +V+Y 
Sbjct: 327 RQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYK 386
Query: 167 NID 169
           N D
Sbjct: 387 NND 389
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice Inserts Length = 1245 Back     alignment and structure
>pdb|2H0B|A Chain A, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN 1 ALPHA Length = 184 Back     alignment and structure
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns 2-6 Length = 1019 Back     alignment and structure
>pdb|2JD4|A Chain A, Mouse Laminin Alpha1 Chain, Domains Lg4-5 Length = 383 Back     alignment and structure
>pdb|2R16|A Chain A, Crystal Structure Of Bovine Neurexin 1 Alpha LnsLG DOMAIN 4 (With No Splice Insert) Length = 182 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
2h0b_A184 Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A 1e-32
2jd4_A 383 Laminin subunit alpha-1; basement membrane protein 1e-29
2jd4_A383 Laminin subunit alpha-1; basement membrane protein 1e-19
3bod_A178 Neurexin-1-alpha; neurexin1D, LNS6, alternative sp 3e-29
2r1d_A226 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 9e-29
2r16_A182 Neurexin-1-alpha; beta-sandwich, cell adhesion, sp 7e-28
3pve_A189 Agrin, AGRN protein; mRNA splicing, structural gen 2e-26
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 5e-26
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 2e-22
3qcw_A1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 3e-21
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 1e-18
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 4e-15
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 6e-15
1dyk_A 394 Laminin alpha 2 chain; metal binding protein; 2.0A 1e-25
1dyk_A394 Laminin alpha 2 chain; metal binding protein; 2.0A 7e-19
3sh4_A195 LG3 peptide; actin disassambly, integrin alpha12 B 1e-24
3v64_A191 Low-density lipoprotein receptor-related protein; 1e-24
1h30_A 422 GAS6, growth-arrest-specific protein; laminin G-do 4e-24
1h30_A422 GAS6, growth-arrest-specific protein; laminin G-do 3e-08
1pz7_A204 Agrin; structural protein; 1.42A {Gallus gallus} S 3e-23
3asi_A 410 Neurexin-1-alpha; beta-sandwich, cell adhesion, sy 7e-23
3asi_A410 Neurexin-1-alpha; beta-sandwich, cell adhesion, sy 4e-21
2r1b_A220 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 2e-22
2wjs_A 608 Laminin subunit alpha-2; integrin, secreted, coile 6e-22
2wjs_A 608 Laminin subunit alpha-2; integrin, secreted, coile 2e-21
2wjs_A608 Laminin subunit alpha-2; integrin, secreted, coile 1e-15
1d2s_A170 SHBG, sex hormone-binding globulin; steroid transp 2e-19
1f5f_A205 SHBG, sex hormone-binding globulin; jellyroll, sig 3e-19
2erf_A209 Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sug 2e-04
1za4_A251 Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cel 3e-04
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} Length = 184 Back     alignment and structure
 Score =  114 bits (288), Expect = 1e-32
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 9/159 (5%)

Query: 33  KELMISLLFTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAGDTEIST-PRGL 91
               I+L F    T + + ++  +    DY  L L++G + + INLG+G  E    P   
Sbjct: 28  SSDEITLSFK---TLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNG 84

Query: 92  RLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELF-L 150
           + +D  WH V VTR    VT++VD I TT       +  L      ++GG     +L   
Sbjct: 85  KFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGS 144

Query: 151 GHIEWLRGCLSDVIYNN----IDTLKRARARSSQADAQG 185
                  GCL +V+Y N    ++  + A+    +    G
Sbjct: 145 PVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHG 183
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383 Back     alignment and structure
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383 Back     alignment and structure
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A* Length = 178 Back     alignment and structure
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E* Length = 226 Back     alignment and structure
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus} Length = 182 Back     alignment and structure
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus} Length = 189 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394 Back     alignment and structure
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394 Back     alignment and structure
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A Length = 195 Back     alignment and structure
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A Length = 191 Back     alignment and structure
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Length = 422 Back     alignment and structure
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Length = 422 Back     alignment and structure
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A Length = 204 Back     alignment and structure
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410 Back     alignment and structure
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410 Back     alignment and structure
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A* Length = 220 Back     alignment and structure
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608 Back     alignment and structure
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608 Back     alignment and structure
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608 Back     alignment and structure
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A* Length = 170 Back     alignment and structure
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A* Length = 205 Back     alignment and structure
>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A 1z78_A Length = 209 Back     alignment and structure
>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET: SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A 2ouj_A Length = 251 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query195
2h0b_A184 Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A 99.97
2r1d_A226 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 99.97
3v64_A191 Low-density lipoprotein receptor-related protein; 99.97
3bod_A178 Neurexin-1-alpha; neurexin1D, LNS6, alternative sp 99.97
2r16_A182 Neurexin-1-alpha; beta-sandwich, cell adhesion, sp 99.97
2r1b_A220 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 99.97
3pve_A189 Agrin, AGRN protein; mRNA splicing, structural gen 99.97
1pz7_A204 Agrin; structural protein; 1.42A {Gallus gallus} S 99.97
3sh4_A195 LG3 peptide; actin disassambly, integrin alpha12 B 99.96
1d2s_A170 SHBG, sex hormone-binding globulin; steroid transp 99.95
2jd4_A 383 Laminin subunit alpha-1; basement membrane protein 99.94
1f5f_A205 SHBG, sex hormone-binding globulin; jellyroll, sig 99.94
1dyk_A 394 Laminin alpha 2 chain; metal binding protein; 2.0A 99.93
2jd4_A383 Laminin subunit alpha-1; basement membrane protein 99.93
3asi_A 410 Neurexin-1-alpha; beta-sandwich, cell adhesion, sy 99.93
1h30_A 422 GAS6, growth-arrest-specific protein; laminin G-do 99.93
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 99.92
1dyk_A394 Laminin alpha 2 chain; metal binding protein; 2.0A 99.92
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 99.91
3asi_A410 Neurexin-1-alpha; beta-sandwich, cell adhesion, sy 99.91
2wjs_A 608 Laminin subunit alpha-2; integrin, secreted, coile 99.91
2wjs_A 608 Laminin subunit alpha-2; integrin, secreted, coile 99.91
1h30_A422 GAS6, growth-arrest-specific protein; laminin G-do 99.83
1za4_A251 Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cel 98.65
2erf_A209 Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sug 98.55
3flp_A217 SAP-like pentraxin; physiological doubly-stacked h 98.5
2v73_A191 CBM40, putative EXO-alpha-sialidase; carbohydrate- 98.44
3kqr_A204 Serum amyloid P-component; glycoprotein, disulfide 98.43
3pvn_A206 C-reactive protein; pentraxin family, immune syste 98.34
2uur_A245 Collagen alpha-1(IX) chain; glycoprotein, hydroxyl 98.24
4dqa_A355 Uncharacterized protein; two domains structure, DU 98.21
2sli_A 679 Intramolecular trans-sialidase; hydrolase, neurami 96.87
1a8d_A 452 Tetanus neurotoxin; clostridial, ganglioside bindi 96.85
2jkb_A 686 Sialidase B; intramolecular trans-sialidase, lyase 96.76
4b1m_A185 Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacil 96.45
2nyy_A 1295 Botulinum neurotoxin type A; neurotoxin, FAB, prot 93.92
3v0a_B 1196 NTNH; botulinum neurotoxin, toxin, neurotoxin asso 91.8
1epw_A 1290 Bontoxilysin B, botulinum neurotoxin type B; zinc, 89.22
3zr5_A656 Galactocerebrosidase; hydrolase, GALC, glycosyl hy 80.83
4azz_A172 Levanase; hydrolase; 1.70A {Bacillus subtilis} 81.12
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} Back     alignment and structure
Probab=99.97  E-value=1.9e-30  Score=196.58  Aligned_cols=168  Identities=27%  Similarity=0.366  Sum_probs=136.5

Q ss_pred             CCCcccc-cchhhhccc-----CccEEEEEEEecCCCCCCCeEEEEEcCCCCEEEEEEECCEEEEEEEcCCCeeEE-eCC
Q psy6627          16 AATPTFH-KSCEKALLY-----HKELMISLLFTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAGDTEI-STP   88 (195)
Q Consensus        16 ~~~~~F~-~sy~~~~~~-----~~~~~l~l~f~~~rT~~~~glL~~~~~~~~~l~l~l~~g~l~~~~~~g~~~~~~-~~~   88 (195)
                      .+.++|. +||++|+..     ....+++|+|   ||++++|+|||.++..||++|+|.+|++.+.++.|++.... ...
T Consensus         5 ~~~~~F~G~sy~~~~~~~~~~~~~~~~isl~f---rT~~~~GlLl~~g~~~d~l~l~L~~G~l~~~~~~G~g~~~~~~~~   81 (184)
T 2h0b_A            5 EYIATFKGSEYFCYDLSQNPIQSSSDEITLSF---KTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEP   81 (184)
T ss_dssp             CCEEEEESSEEEEEECSSSCEEESEEEEEEEE---EESCSCEEEEEECCTTEEEEEEEETTEEEEEEEESSCEEEEEECC
T ss_pred             cceeEECCceEEEEccccCccccCccEEEEEE---EeCCCCEEEEEeCCCCCEEEEEEECCEEEEEEECCCCeEEEEEec
Confidence            3567899 899999875     3568899999   99999999999977689999999999999999999886442 223


Q ss_pred             CcccCCCCCcEEEEEEEECCEEEEEECCcceeeEEcCCceeeeecCCcEEEcccCCCCccc-cCCCcCceeEeccEEECC
Q psy6627          89 RGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELF-LGHIEWLRGCLSDVIYNN  167 (195)
Q Consensus        89 ~~~~i~dg~wh~V~l~~~~~~~~L~vd~~~~~~~~~~~~~~~l~~~~~i~iGg~~~~~~~~-~~~~~~F~GCi~~v~in~  167 (195)
                      ....+|||+||+|.+.+..+.+.|+||+........++....++....+||||.|.....+ .+...+|.|||+++++|+
T Consensus        82 ~~~~l~Dg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~~~~l~~~~~l~lGG~p~~~~~~~~~~~~~F~GCi~~v~in~  161 (184)
T 2h0b_A           82 VNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKN  161 (184)
T ss_dssp             SSSCSSSSSCEEEEEEEETTEEEEEETTTEEEEEECSTTCCCEEECSEEEESCCTTGGGSTTCSCCCBCEEEEEEEEEEE
T ss_pred             CCcccCCCCeEEEEEEEeCCEEEEEEcCceeeeeECCCCceeccCCCCEEECCCCccccCcCCcccCCCEEEeeEEEECC
Confidence            5678999999999999999999999999666555566666567777889999999854322 356789999999999999


Q ss_pred             cch----hhHHhcCCCceeeccc
Q psy6627         168 IDT----LKRARARSSQADAQGK  186 (195)
Q Consensus       168 ~~l----~~~~~~~~~~~~~~~v  186 (195)
                      +.+    ...++...+++..+|+
T Consensus       162 ~~~~l~l~~~a~~~~~~~~~~g~  184 (184)
T 2h0b_A          162 NDVRLELSRLAKQGDPKMKIHGV  184 (184)
T ss_dssp             SSCEECHHHHHHHCCTTEEEEEC
T ss_pred             EEcchhHHHHHhcCCCceEeccC
Confidence            874    4556666777777664
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E* Back     alignment and structure
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A Back     alignment and structure
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A* Back     alignment and structure
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus} Back     alignment and structure
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A* Back     alignment and structure
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus} Back     alignment and structure
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A Back     alignment and structure
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A Back     alignment and structure
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A* Back     alignment and structure
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Back     alignment and structure
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A* Back     alignment and structure
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Back     alignment and structure
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Back     alignment and structure
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Back     alignment and structure
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Back     alignment and structure
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Back     alignment and structure
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Back     alignment and structure
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Back     alignment and structure
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Back     alignment and structure
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Back     alignment and structure
>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET: SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A 2ouj_A Back     alignment and structure
>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A 1z78_A Back     alignment and structure
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A Back     alignment and structure
>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens} Back     alignment and structure
>3kqr_A Serum amyloid P-component; glycoprotein, disulfide bond, lectin, metal-binding secreted; HET: NAG; 1.50A {Homo sapiens} SCOP: b.29.1.5 PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A* 3d5o_A* 2w08_A* Back     alignment and structure
>3pvn_A C-reactive protein; pentraxin family, immune system; 1.98A {Homo sapiens} SCOP: b.29.1.5 PDB: 1gnh_A 1lj7_A 3l2y_A 1b09_A 3pvo_A Back     alignment and structure
>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural protein, NC4, collagen IX, polymorphism, extracellular matrix; 1.8A {Homo sapiens} Back     alignment and structure
>4dqa_A Uncharacterized protein; two domains structure, DUF 1735, laminin_G_3 concanavalin A- lectin/glucanases superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus} Back     alignment and structure
>2sli_A Intramolecular trans-sialidase; hydrolase, neuraminidase; HET: SKD; 1.80A {Macrobdella decora} SCOP: b.29.1.9 b.68.1.1 PDB: 1sll_A 1sli_A* 3sli_A* 4sli_A* Back     alignment and structure
>1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A {Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A 1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A* 1yxw_A* 1yyn_A* 1diw_A* Back     alignment and structure
>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A* Back     alignment and structure
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A Back     alignment and structure
>2nyy_A Botulinum neurotoxin type A; neurotoxin, FAB, protein antibody complex, toxin- system complex; 2.61A {Clostridium botulinum} PDB: 2nz9_A 3bta_A 3v0a_A* 3v0b_A 3v0c_A 3zus_A 3zur_A Back     alignment and structure
>3v0a_B NTNH; botulinum neurotoxin, toxin, neurotoxin associated protein, progenitor toxin complex, VHH bound interlocked complex; HET: MES; 2.70A {Clostridium botulinum} PDB: 3v0b_B Back     alignment and structure
>1epw_A Bontoxilysin B, botulinum neurotoxin type B; zinc, metalloprotease, transmembrane, hydrolase; 1.90A {Clostridium botulinum} SCOP: b.29.1.6 b.42.4.2 d.92.1.7 h.4.2.1 PDB: 1f31_A* 1g9a_A* 1g9b_A* 1g9c_A* 1g9d_A* 1i1e_A* 1s0b_A 1s0c_A 1s0d_A 1s0e_A 1s0f_A 1s0g_A 2np0_A 3zuq_A 2etf_A 2xhl_A 1z0h_A 2nm1_A 3g94_A 1f82_A ... Back     alignment and structure
>3zr5_A Galactocerebrosidase; hydrolase, GALC, glycosyl hydrolase, krabbe disease, TIM BAR lectin domain; HET: NAG; 2.10A {Mus musculus} PDB: 3zr6_A* Back     alignment and structure
>4azz_A Levanase; hydrolase; 1.70A {Bacillus subtilis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 195
d1dyka2185 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse 4e-19
d1pz7a_195 b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxI 5e-15
d2r1da1177 b.29.1.4 (A:36-212) Ligand-binding domain of neure 5e-14
d1d2sa_170 b.29.1.4 (A:) Sex hormone-binding globulin {Human 6e-14
d1h30a1191 b.29.1.4 (A:261-451) Growth-arrest-specific protei 8e-13
d1dyka1189 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse 9e-13
d1h30a2218 b.29.1.4 (A:461-678) Growth-arrest-specific protei 8e-10
d2erfa1206 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal do 2e-05
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 185 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.7 bits (193), Expect = 4e-19
 Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 7/157 (4%)

Query: 33  KELMISLLFTSPLTKRSDAILFLSAGK-IDYCLLRLESGRLKVHINLGAGDTEISTPR-- 89
            +L++   F    T R   +L   + + +D   + +   +L  H++ GAG          
Sbjct: 24  LDLLVEFEFR---TTRPTGVLLGVSSQKMDGMGIEMIDEKLMFHVDNGAGRFTAIYDAEI 80

Query: 90  GLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGG-QGDFTEL 148
              + +  WH V   +I+  + L VD      +         + +  +F+GG  G   + 
Sbjct: 81  PGHMCNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTSADTNDPVFVGGFPGGLNQF 140

Query: 149 FLGHIEWLRGCLSDVIYNNIDTLKRARARSSQADAQG 185
            L      RGC+  +              +   + +G
Sbjct: 141 GLTTNIRFRGCIRSLKLTKGTGKPLEVNFAKALELRG 177
>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 195 Back     information, alignment and structure
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 177 Back     information, alignment and structure
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]} Length = 170 Back     information, alignment and structure
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 Back     information, alignment and structure
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 189 Back     information, alignment and structure
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 218 Back     information, alignment and structure
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 206 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query195
d2r1da1177 Ligand-binding domain of neurexin 1beta {Rat (Ratt 99.97
d1dyka2185 Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 99.96
d1dyka1189 Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 99.96
d1pz7a_195 Agrin {Chicken (Gallus gallus) [TaxId: 9031]} 99.96
d1d2sa_170 Sex hormone-binding globulin {Human (Homo sapiens) 99.93
d1h30a1191 Growth-arrest-specific protein Gas6 {Human (Homo s 99.92
d1h30a2218 Growth-arrest-specific protein Gas6 {Human (Homo s 99.9
d2erfa1206 Thrombospondin 1 N-terminal domain {Human (Homo sa 98.99
d1b09a_206 C-reactive protein (CRP) {Human (Homo sapiens) [Ta 98.5
d1saca_204 Serum amyloid P component (SAP) {Human (Homo sapie 98.36
d2slia1196 Leech intramolecular trans-sialidase, N-terminal d 97.94
d3btaa1207 Botulinum neurotoxin {Clostridium botulinum, serot 97.88
d1epwa1218 Botulinum neurotoxin {Clostridium botulinum, serot 97.87
d1a8da1247 Tetanus neurotoxin {Clostridium tetani [TaxId: 151 97.58
d2ah2a1225 Trypanosoma sialidase, C-terminal domain {Parasiti 91.58
d1n1ta1222 Trypanosoma sialidase, C-terminal domain {Trypanos 87.06
d1oq1a_223 Hypothetical protein YesU {Bacillus subtilis [TaxI 81.9
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Ligand-binding domain of neurexin 1beta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=1.4e-29  Score=188.77  Aligned_cols=157  Identities=24%  Similarity=0.279  Sum_probs=126.8

Q ss_pred             CCcccc--cchhhhccc------CccEEEEEEEecCCCCCCCeEEEEEcC---CCCEEEEEEECCEEEEEEEcCCCeeEE
Q psy6627          17 ATPTFH--KSCEKALLY------HKELMISLLFTSPLTKRSDAILFLSAG---KIDYCLLRLESGRLKVHINLGAGDTEI   85 (195)
Q Consensus        17 ~~~~F~--~sy~~~~~~------~~~~~l~l~f~~~rT~~~~glL~~~~~---~~~~l~l~l~~g~l~~~~~~g~~~~~~   85 (195)
                      +++.|.  +||+.|..+      ....+|+|.|   ||++++|+|||..+   ..+|+.|+|.+|+|.+.++.|++...+
T Consensus         4 ~t~~F~~g~~~i~y~~~~~~~~~~~~~~is~~F---rT~~~~G~Ll~~~~~~~~~~~l~l~l~~G~l~~~~~~g~~~~~~   80 (177)
T d2r1da1           4 TTYIFSKGGGQITYKWPPNDRPSTRADRLAIGF---STVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAI   80 (177)
T ss_dssp             SEEEEEEEEEEEEEECCGGGCCCBSEEEEEEEE---ECCCSSEEEEEEEECTTCCCEEEEEEETTEEEEEEESSSCEEEE
T ss_pred             ccEEeCCCCeEEEEECCCccCCCccccEEEEEE---EeCCCCEEEEEEcCCCCCCcEEEEEEECCEEEEEEcCCCceEEE
Confidence            677887  789988643      3457899999   99999999999853   378999999999999999999876665


Q ss_pred             eCCCcccCCCCCcEEEEEEEECCEEEEEECCcceeeEEc-CCceeeeecCCcEEEcccCCCCccccCCCcCceeEeccEE
Q psy6627          86 STPRGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKL-PGKFFELNIHYGLFIGGQGDFTELFLGHIEWLRGCLSDVI  164 (195)
Q Consensus        86 ~~~~~~~i~dg~wh~V~l~~~~~~~~L~vd~~~~~~~~~-~~~~~~l~~~~~i~iGg~~~~~~~~~~~~~~F~GCi~~v~  164 (195)
                      .. ....+|||+||+|.+.+..+.++|+||+........ ......++....+||||.|..        .+|+|||++|+
T Consensus        81 ~~-~~~~vnDg~WH~V~v~~~~~~~~L~VD~~~~~~~~~~~~~~~~~~~~~~l~iGG~p~~--------~~F~GCi~~v~  151 (177)
T d2r1da1          81 EE-SNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQG--------QPFQGQLSGLY  151 (177)
T ss_dssp             EC-CSSCCCSSSCEEEEEEEETTEEEEEETTSCCEEECCSSCCCCCBCSEEEEEESSTTTT--------CCCCEEEEEEE
T ss_pred             Ee-CCceecCCCEEEEEEEEECCEEEEEECCeeeEEEecccCccccccccceEEEccCCCC--------CCCEEEEEEEE
Confidence            44 567899999999999999999999999954443332 223344555567999998864        68999999999


Q ss_pred             ECCcchhhHHhcCCCceeecc
Q psy6627         165 YNNIDTLKRARARSSQADAQG  185 (195)
Q Consensus       165 in~~~l~~~~~~~~~~~~~~~  185 (195)
                      +||..++++++...+.+...|
T Consensus       152 ~Ng~~~l~la~~~~~~v~~~g  172 (177)
T d2r1da1         152 YNGLKVLNMAAENDANIAIVG  172 (177)
T ss_dssp             ETTBCHHHHHHTTCTTEEEEE
T ss_pred             ECCEEHHHHHhccCCcEEEee
Confidence            999988888887776766544
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} Back     information, alignment and structure
>d3btaa1 b.29.1.6 (A:872-1078) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]} Back     information, alignment and structure
>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]} Back     information, alignment and structure
>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]} Back     information, alignment and structure
>d2ah2a1 b.29.1.15 (A:409-633) Trypanosoma sialidase, C-terminal domain {Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]} Back     information, alignment and structure
>d1n1ta1 b.29.1.15 (A:413-634) Trypanosoma sialidase, C-terminal domain {Trypanosoma rangeli [TaxId: 5698]} Back     information, alignment and structure
>d1oq1a_ b.29.1.17 (A:) Hypothetical protein YesU {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure