Psyllid ID: psy6637

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLSSVVIRSITMADGLGEGQWNAQEKINKPC
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHccccEEEEEEccEEEEEEEHHHHHHHHcccccEEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccccccccccccccccEEcccccHHHHHHHHHHHccccEEEEccccEEEEEEHHHHHHccccccEEEEEEccccccccccccHHHHHcccc
Coil and Loop (DISEMBL)
MSPEDQKKWEEeemgqkvsfeqchidpapfqlvertsllkVHSIFSLVGVNHAYVTAIGRLVGVVGlkevrndshlsSVVIRSITmadglgegqwnaqekinkpc
Flexible Loop (DISEMBL)
MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKevrndshlssvvIRSITmadglgegqwnaqekinkpc
Low Complexity Region (SEG)
MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLSSVVIRSITMADGLGEGQWNAQEKINKPC
Disordered region (IsUnstruct)
*******************FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLSSVVIRSITMADGLG**************
Disordered Region (DISOPRED)
**PEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHL***************************P*
Disordered Region (DISEMBL)
****************KVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLSSVVIRSITMADGLGEGQWNAQEKINKPC
Disordered Region (DISPRO)
*SPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLSSVVIRSITMADGLGEGQWNAQEKINKPC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLSSVVIRSITMADGLGEGQWNAQEKINKPC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	105	2.2.26 [Sep-21-2011]
Q9VGH7	1193	Chloride channel protein	yes	N/A	0.676	0.059	0.726	9e-26
P51788	898	Chloride channel protein	yes	N/A	0.676	0.079	0.661	7e-24
Q9WU45	902	Chloride channel protein	yes	N/A	0.685	0.079	0.652	2e-23
P35525	907	Chloride channel protein	yes	N/A	0.685	0.079	0.652	2e-23
Q9R0A1	908	Chloride channel protein	yes	N/A	0.685	0.079	0.652	2e-23
P51789	898	Chloride channel protein	yes	N/A	0.685	0.080	0.652	3e-23
Q9MZT1	976	Chloride channel protein	no	N/A	0.685	0.073	0.527	4e-17
P35523	988	Chloride channel protein	no	N/A	0.685	0.072	0.513	6e-17
Q64347	994	Chloride channel protein	no	N/A	0.685	0.072	0.513	2e-16
P35524	994	Chloride channel protein	no	N/A	0.685	0.072	0.513	2e-16

>sp|Q9VGH7|CLCN2_DROME Chloride channel protein 2 OS=Drosophila melanogaster GN=ClC-a PE=2 SV=3

 Score =  115 bits (287), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 53/73 (72%), Positives = 64/73 (87%), Gaps = 2/73 (2%)

Query: 1    MSPEDQKKWEEEEMGQKVSFEQC--HIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI 58
            MSPEDQK+WE EEM + +  ++   HIDP+PFQLVERTS+LKVHS+FS+VG+NHAYVT I
Sbjct: 1022 MSPEDQKQWELEEMLKPIDLQKANVHIDPSPFQLVERTSILKVHSLFSMVGINHAYVTKI 1081

Query: 59   GRLVGVVGLKEVR 71
            GRLVGVVGLKE+R
Sbjct: 1082 GRLVGVVGLKELR 1094

Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport.
Drosophila melanogaster (taxid: 7227)

>sp|P51788|CLCN2_HUMAN Chloride channel protein 2 OS=Homo sapiens GN=CLCN2 PE=1 SV=2

 Score =  108 bits (271), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 47/71 (66%), Positives = 61/71 (85%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           MSPE+  +WEE+++ + V+F  C IDPAPFQLVERTSL K H+IFSL+GV+HAYVT+IGR
Sbjct: 766 MSPEEILEWEEQQLDEPVNFSDCKIDPAPFQLVERTSLHKTHTIFSLLGVDHAYVTSIGR 825

Query: 61  LVGVVGLKEVR 71
           L+G+V LKE+R
Sbjct: 826 LIGIVTLKELR 836

Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport.

Homo sapiens (taxid: 9606)

>sp|Q9WU45|CLCN2_CAVPO Chloride channel protein 2 OS=Cavia porcellus GN=CLCN2 PE=2 SV=1

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 61/72 (84%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           MSPE+  +WEE+++ + V+F  C IDPAPFQLVERTSL K H+IFSL+GV+HAYVT+IGR
Sbjct: 770 MSPEEILEWEEQQLNEPVNFSDCKIDPAPFQLVERTSLHKTHTIFSLLGVDHAYVTSIGR 829

Query: 61  LVGVVGLKEVRN 72
           L+G+V LKE+R 
Sbjct: 830 LIGIVTLKELRK 841

Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport.

Cavia porcellus (taxid: 10141)

>sp|P35525|CLCN2_RAT Chloride channel protein 2 OS=Rattus norvegicus GN=Clcn2 PE=2 SV=1

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 61/72 (84%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           MSPE+  +WEE+++ + V+F  C IDPAPFQLVERTSL K H+IFSL+GV+HAYVT+IGR
Sbjct: 775 MSPEEILEWEEQQLDEPVNFSDCKIDPAPFQLVERTSLHKTHTIFSLLGVDHAYVTSIGR 834

Query: 61  LVGVVGLKEVRN 72
           L+G+V LKE+R 
Sbjct: 835 LIGIVTLKELRK 846

Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport.

Rattus norvegicus (taxid: 10116)

>sp|Q9R0A1|CLCN2_MOUSE Chloride channel protein 2 OS=Mus musculus GN=Clcn2 PE=2 SV=2

 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 61/72 (84%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           MSPE+  +WEE+++ + V+F  C IDPAPFQLVERTSL K H+IFSL+GV+HAYVT+IGR
Sbjct: 776 MSPEEILEWEEQQLDEPVNFSDCKIDPAPFQLVERTSLHKTHTIFSLLGVDHAYVTSIGR 835

Query: 61  LVGVVGLKEVRN 72
           L+G+V LKE+R 
Sbjct: 836 LIGIVTLKELRK 847

Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport.

Mus musculus (taxid: 10090)

>sp|P51789|CLCN2_RABIT Chloride channel protein 2 OS=Oryctolagus cuniculus GN=CLCN2 PE=2 SV=1

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 61/72 (84%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           MSPE+  +WEE+++ + V+F  C IDPAPFQLVERTSL K H+IFSL+GV+HAYVT+IGR
Sbjct: 766 MSPEEILEWEEQQLDEPVNFSDCKIDPAPFQLVERTSLHKTHTIFSLLGVDHAYVTSIGR 825

Query: 61  LVGVVGLKEVRN 72
           L+G+V LKE+R 
Sbjct: 826 LIGIVTLKELRK 837

Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport. May be involved in gastric HCl secretion.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q9MZT1|CLCN1_CANFA Chloride channel protein 1 OS=Canis familiaris GN=CLCN1 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 58/72 (80%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           MSPE+ + WE+E++ Q V F+ C ID +PFQLVE+TSL K H++FSL+G++ AYVT++G+
Sbjct: 792 MSPEEIEAWEQEQLSQPVCFDYCCIDQSPFQLVEQTSLHKTHTLFSLLGLHLAYVTSMGK 851

Query: 61  LVGVVGLKEVRN 72
           L GV+ L+E++ 
Sbjct: 852 LRGVLALEELQK 863

Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport.

Canis familiaris (taxid: 9615)

>sp|P35523|CLCN1_HUMAN Chloride channel protein 1 OS=Homo sapiens GN=CLCN1 PE=1 SV=3

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 58/72 (80%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           MSPE+ + WE+E++ Q V F+ C ID +PFQLVE+T+L K H++FSL+G++ AYVT++G+
Sbjct: 797 MSPEEIEAWEQEQLSQPVCFDSCCIDQSPFQLVEQTTLHKTHTLFSLLGLHLAYVTSMGK 856

Query: 61  LVGVVGLKEVRN 72
           L GV+ L+E++ 
Sbjct: 857 LRGVLALEELQK 868

Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport.

Homo sapiens (taxid: 9606)

>sp|Q64347|CLCN1_MOUSE Chloride channel protein 1 OS=Mus musculus GN=Clcn1 PE=1 SV=3

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 57/72 (79%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           MSPE+ + WE E++ Q V F+ C ID +PFQLVE+T+L K H++FSL+G++ AYVT++G+
Sbjct: 803 MSPEEIEAWEREQLSQPVCFDCCCIDQSPFQLVEQTTLHKTHTLFSLLGLHLAYVTSMGK 862

Query: 61  LVGVVGLKEVRN 72
           L GV+ L+E++ 
Sbjct: 863 LRGVLALEELQK 874

Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport.

Mus musculus (taxid: 10090)

>sp|P35524|CLCN1_RAT Chloride channel protein 1 OS=Rattus norvegicus GN=Clcn1 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 57/72 (79%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           MSPE+ + WE E++ Q V F+ C ID +PFQLVE+T+L K H++FSL+G++ AYVT++G+
Sbjct: 803 MSPEEIEAWEREQLSQPVCFDFCCIDQSPFQLVEQTTLHKTHTLFSLLGLHLAYVTSMGK 862

Query: 61  LVGVVGLKEVRN 72
           L GV+ L+E++ 
Sbjct: 863 LRGVLALEELQK 874

Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
242009651	919	Chloride channel protein ClC-Ka, putativ	0.676	0.077	0.845	1e-28
307170777	1008	Chloride channel protein 2 [Camponotus f	0.676	0.070	0.816	1e-28
383854577	1004	PREDICTED: chloride channel protein 2-li	0.676	0.070	0.830	2e-28
380022339	998	PREDICTED: chloride channel protein 2-li	0.676	0.071	0.830	3e-28
345495188	1037	PREDICTED: chloride channel protein 2-li	0.676	0.068	0.830	3e-28
328785091	998	PREDICTED: chloride channel protein 2-li	0.676	0.071	0.830	3e-28
307195651	216	Chloride channel protein 2 [Harpegnathos	0.676	0.328	0.816	3e-28
350397649	1004	PREDICTED: chloride channel protein 2-li	0.676	0.070	0.830	5e-28
340724384	1004	PREDICTED: chloride channel protein 2-li	0.676	0.070	0.830	5e-28
322800715	929	hypothetical protein SINV_00748 [Solenop	0.676	0.076	0.816	6e-28

>gi|242009651|ref|XP_002425596.1| Chloride channel protein ClC-Ka, putative [Pediculus humanus corporis] gi|212509489|gb|EEB12858.1| Chloride channel protein ClC-Ka, putative [Pediculus humanus corporis]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/71 (84%), Positives = 66/71 (92%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           MSPEDQK+WEEEEM   V+FE  HIDPAPFQLVERTSLLKVHS+FS+VGVNHAYVTAIGR
Sbjct: 798 MSPEDQKQWEEEEMSVPVNFESSHIDPAPFQLVERTSLLKVHSLFSMVGVNHAYVTAIGR 857

Query: 61  LVGVVGLKEVR 71
           L+GVVGLKE+R
Sbjct: 858 LIGVVGLKELR 868

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170777|gb|EFN62902.1| Chloride channel protein 2 [Camponotus floridanus]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/71 (81%), Positives = 65/71 (91%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           MSPEDQK+WEE EM  +V F +CHIDPAPFQLVERTSLLKVHS+FS+VGVNHAYVTAIGR
Sbjct: 882 MSPEDQKRWEESEMALEVDFSRCHIDPAPFQLVERTSLLKVHSLFSMVGVNHAYVTAIGR 941

Query: 61  LVGVVGLKEVR 71
           L+GVV LKE+R
Sbjct: 942 LIGVVALKELR 952

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854577|ref|XP_003702797.1| PREDICTED: chloride channel protein 2-like [Megachile rotundata]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 65/71 (91%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           MS EDQK+WEE EM  +V F +CHIDPAPFQLVERTSLLKVHS+FS+VGVNHAYVTAIGR
Sbjct: 879 MSAEDQKRWEESEMALEVDFSRCHIDPAPFQLVERTSLLKVHSLFSMVGVNHAYVTAIGR 938

Query: 61  LVGVVGLKEVR 71
           LVGVVGLKE+R
Sbjct: 939 LVGVVGLKELR 949

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022339|ref|XP_003695007.1| PREDICTED: chloride channel protein 2-like [Apis florea]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 65/71 (91%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           MS EDQK+WEE EM  +V F +CHIDPAPFQLVERTSLLKVHS+FS+VGVNHAYVTAIGR
Sbjct: 873 MSAEDQKRWEESEMSLEVDFSRCHIDPAPFQLVERTSLLKVHSLFSMVGVNHAYVTAIGR 932

Query: 61  LVGVVGLKEVR 71
           LVGVVGLKE+R
Sbjct: 933 LVGVVGLKELR 943

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495188|ref|XP_001604692.2| PREDICTED: chloride channel protein 2-like [Nasonia vitripennis]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 65/71 (91%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           MS EDQK+WEE EM  +V F +CHIDPAPFQLVERTSLLKVHS+FS+VGVNHAYVTAIGR
Sbjct: 897 MSAEDQKQWEESEMALEVDFSRCHIDPAPFQLVERTSLLKVHSLFSMVGVNHAYVTAIGR 956

Query: 61  LVGVVGLKEVR 71
           LVGVVGLKE+R
Sbjct: 957 LVGVVGLKELR 967

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785091|ref|XP_392015.3| PREDICTED: chloride channel protein 2-like [Apis mellifera]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 65/71 (91%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           MS EDQK+WEE EM  +V F +CHIDPAPFQLVERTSLLKVHS+FS+VGVNHAYVTAIGR
Sbjct: 873 MSAEDQKRWEESEMSLEVDFSRCHIDPAPFQLVERTSLLKVHSLFSMVGVNHAYVTAIGR 932

Query: 61  LVGVVGLKEVR 71
           LVGVVGLKE+R
Sbjct: 933 LVGVVGLKELR 943

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195651|gb|EFN77493.1| Chloride channel protein 2 [Harpegnathos saltator]

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/71 (81%), Positives = 64/71 (90%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           MS EDQK+WEE EM  +V F +CHIDPAPFQLVERTSLLKVHS+FS+VGVNHAYVTAIGR
Sbjct: 91  MSAEDQKRWEESEMALEVDFSRCHIDPAPFQLVERTSLLKVHSLFSMVGVNHAYVTAIGR 150

Query: 61  LVGVVGLKEVR 71
           LVGVV LKE+R
Sbjct: 151 LVGVVALKELR 161

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350397649|ref|XP_003484942.1| PREDICTED: chloride channel protein 2-like [Bombus impatiens]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 65/71 (91%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           MS EDQK+WEE EM  +V F +CHIDPAPFQLVERTSLLKVHS+FS+VGVNHAYVTAIGR
Sbjct: 879 MSAEDQKRWEESEMMLEVDFSRCHIDPAPFQLVERTSLLKVHSLFSMVGVNHAYVTAIGR 938

Query: 61  LVGVVGLKEVR 71
           LVGVVGLKE+R
Sbjct: 939 LVGVVGLKELR 949

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724384|ref|XP_003400562.1| PREDICTED: chloride channel protein 2-like [Bombus terrestris]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 65/71 (91%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           MS EDQK+WEE EM  +V F +CHIDPAPFQLVERTSLLKVHS+FS+VGVNHAYVTAIGR
Sbjct: 879 MSAEDQKRWEESEMMLEVDFSRCHIDPAPFQLVERTSLLKVHSLFSMVGVNHAYVTAIGR 938

Query: 61  LVGVVGLKEVR 71
           LVGVVGLKE+R
Sbjct: 939 LVGVVGLKELR 949

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800715|gb|EFZ21619.1| hypothetical protein SINV_00748 [Solenopsis invicta]

 Score =  127 bits (320), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 58/71 (81%), Positives = 64/71 (90%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           MS EDQK+WEE EM  +V F +CHIDPAPFQLVERTSLLKVHS+FS+VGVNHAYVTAIGR
Sbjct: 803 MSAEDQKRWEESEMALEVDFSRCHIDPAPFQLVERTSLLKVHSLFSMVGVNHAYVTAIGR 862

Query: 61  LVGVVGLKEVR 71
           LVGVV LKE+R
Sbjct: 863 LVGVVALKELR 873

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
FB|FBgn0051116	1193	ClC-a "Chloride channel-a" [Dr	0.676	0.059	0.726	6.3e-23
UNIPROTKB|P51788	898	CLCN2 "Chloride channel protei	0.676	0.079	0.661	5.5e-21
RGD|2361	907	Clcn2 "chloride channel, volta	0.676	0.078	0.661	5.6e-21
MGI|MGI:105061	908	Clcn2 "chloride channel 2" [Mu	0.676	0.078	0.661	5.6e-21
UNIPROTKB|F1N0K8	903	CLCN2 "Uncharacterized protein	0.676	0.078	0.647	1.2e-20
UNIPROTKB|I3LMX7	910	CLCN2 "Uncharacterized protein	0.676	0.078	0.647	1.2e-20
UNIPROTKB|F1PJ67	904	CLCN2 "Uncharacterized protein	0.676	0.078	0.633	4e-20
ZFIN|ZDB-GENE-070705-19	940	clcn2 "chloride channel 2" [Da	0.676	0.075	0.633	3.9e-19
ZFIN|ZDB-GENE-100921-11	817	clcn1b "chloride channel 1b" [	0.676	0.086	0.591	5.1e-19
UNIPROTKB|F1NAL0	847	F1NAL0 "Uncharacterized protei	0.676	0.083	0.577	6.4e-18

FB|FBgn0051116 ClC-a "Chloride channel-a" [Drosophila melanogaster (taxid:7227)]

 Score = 278 (102.9 bits), Expect = 6.3e-23, P = 6.3e-23
 Identities = 53/73 (72%), Positives = 64/73 (87%)

Query:     1 MSPEDQKKWEEEEMGQKVSFEQC--HIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI 58
             MSPEDQK+WE EEM + +  ++   HIDP+PFQLVERTS+LKVHS+FS+VG+NHAYVT I
Sbjct:  1022 MSPEDQKQWELEEMLKPIDLQKANVHIDPSPFQLVERTSILKVHSLFSMVGINHAYVTKI 1081

Query:    59 GRLVGVVGLKEVR 71
             GRLVGVVGLKE+R
Sbjct:  1082 GRLVGVVGLKELR 1094

GO:0006821 "chloride transport" evidence=ISS

GO:0005254 "chloride channel activity" evidence=ISS

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=ISS

UNIPROTKB|P51788 CLCN2 "Chloride channel protein 2" [Homo sapiens (taxid:9606)]

 Score = 258 (95.9 bits), Expect = 5.5e-21, P = 5.5e-21
 Identities = 47/71 (66%), Positives = 61/71 (85%)

Query:     1 MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
             MSPE+  +WEE+++ + V+F  C IDPAPFQLVERTSL K H+IFSL+GV+HAYVT+IGR
Sbjct:   766 MSPEEILEWEEQQLDEPVNFSDCKIDPAPFQLVERTSLHKTHTIFSLLGVDHAYVTSIGR 825

Query:    61 LVGVVGLKEVR 71
             L+G+V LKE+R
Sbjct:   826 LIGIVTLKELR 836

GO:0034707 "chloride channel complex" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0060689 "cell differentiation involved in salivary gland development" evidence=IEA

GO:0006810 "transport" evidence=TAS

RGD|2361 Clcn2 "chloride channel, voltage-sensitive 2" [Rattus norvegicus (taxid:10116)]

 Score = 258 (95.9 bits), Expect = 5.6e-21, P = 5.6e-21
 Identities = 47/71 (66%), Positives = 61/71 (85%)

Query:     1 MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
             MSPE+  +WEE+++ + V+F  C IDPAPFQLVERTSL K H+IFSL+GV+HAYVT+IGR
Sbjct:   775 MSPEEILEWEEQQLDEPVNFSDCKIDPAPFQLVERTSLHKTHTIFSLLGVDHAYVTSIGR 834

Query:    61 LVGVVGLKEVR 71
             L+G+V LKE+R
Sbjct:   835 LIGIVTLKELR 845

GO:0005247 "voltage-gated chloride channel activity" evidence=ISO;IDA

GO:0006821 "chloride transport" evidence=ISO;IDA

GO:0015629 "actin cytoskeleton" evidence=ISS

GO:0030324 "lung development" evidence=IMP

GO:0030425 "dendrite" evidence=IDA

GO:0034707 "chloride channel complex" evidence=IEA

GO:0034765 "regulation of ion transmembrane transport" evidence=ISO

GO:0043204 "perikaryon" evidence=IDA

GO:0044070 "regulation of anion transport" evidence=ISO

GO:0060041 "retina development in camera-type eye" evidence=ISO

GO:0060689 "cell differentiation involved in salivary gland development" evidence=ISO

MGI|MGI:105061 Clcn2 "chloride channel 2" [Mus musculus (taxid:10090)]

 Score = 258 (95.9 bits), Expect = 5.6e-21, P = 5.6e-21
 Identities = 47/71 (66%), Positives = 61/71 (85%)

Query:     1 MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
             MSPE+  +WEE+++ + V+F  C IDPAPFQLVERTSL K H+IFSL+GV+HAYVT+IGR
Sbjct:   776 MSPEEILEWEEQQLDEPVNFSDCKIDPAPFQLVERTSLHKTHTIFSLLGVDHAYVTSIGR 835

Query:    61 LVGVVGLKEVR 71
             L+G+V LKE+R
Sbjct:   836 LIGIVTLKELR 846

GO:0005216 "ion channel activity" evidence=IEA

GO:0005244 "voltage-gated ion channel activity" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=ISO;IMP

GO:0005254 "chloride channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006821 "chloride transport" evidence=ISO;IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030324 "lung development" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0034707 "chloride channel complex" evidence=IEA

GO:0034765 "regulation of ion transmembrane transport" evidence=IMP

GO:0043204 "perikaryon" evidence=ISO

GO:0044070 "regulation of anion transport" evidence=IMP

GO:0055085 "transmembrane transport" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IMP

GO:0060689 "cell differentiation involved in salivary gland development" evidence=IMP

UNIPROTKB|F1N0K8 CLCN2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 255 (94.8 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 46/71 (64%), Positives = 61/71 (85%)

Query:     1 MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
             M+PE+  +WEE+++ + V+F  C IDPAPFQLVERTSL K H+IFSL+GV+HAYVT+IGR
Sbjct:   771 MTPEEILEWEEQQLDEPVNFSDCKIDPAPFQLVERTSLHKTHTIFSLLGVDHAYVTSIGR 830

Query:    61 LVGVVGLKEVR 71
             L+G+V LKE+R
Sbjct:   831 LIGIVTLKELR 841

GO:0060689 "cell differentiation involved in salivary gland development" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|I3LMX7 CLCN2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 255 (94.8 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 46/71 (64%), Positives = 61/71 (85%)

Query:     1 MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
             M+PE+  +WEE+++ + V+F  C IDPAPFQLVERTSL K H+IFSL+GV+HAYVT+IGR
Sbjct:   778 MTPEEILEWEEQQLDEPVNFSDCKIDPAPFQLVERTSLHKTHTIFSLLGVDHAYVTSIGR 837

Query:    61 LVGVVGLKEVR 71
             L+G+V LKE+R
Sbjct:   838 LIGIVTLKELR 848

GO:0060689 "cell differentiation involved in salivary gland development" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1PJ67 CLCN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 250 (93.1 bits), Expect = 4.0e-20, P = 4.0e-20
 Identities = 45/71 (63%), Positives = 61/71 (85%)

Query:     1 MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
             M+ E+ ++WEE+++ + V+F  C IDPAPFQLVERTSL K H+IFSL+GV+HAYVT+IGR
Sbjct:   772 MTSEEIQEWEEQQLDEPVNFSDCKIDPAPFQLVERTSLHKTHTIFSLLGVDHAYVTSIGR 831

Query:    61 LVGVVGLKEVR 71
             L+G+V LKE+R
Sbjct:   832 LIGIVTLKELR 842

GO:0060689 "cell differentiation involved in salivary gland development" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-070705-19 clcn2 "chloride channel 2" [Danio rerio (taxid:7955)]

 Score = 241 (89.9 bits), Expect = 3.9e-19, P = 3.9e-19
 Identities = 45/71 (63%), Positives = 58/71 (81%)

Query:     1 MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
             MS  +  +WEE+++ + V+F  C IDPAPFQLVERTSL K H+IFSL+G++HAYVT+ GR
Sbjct:   725 MSTAEIAEWEEQQLDEAVNFNNCKIDPAPFQLVERTSLHKTHTIFSLLGLDHAYVTSTGR 784

Query:    61 LVGVVGLKEVR 71
             LVGVV LKE+R
Sbjct:   785 LVGVVSLKELR 795

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-100921-11 clcn1b "chloride channel 1b" [Danio rerio (taxid:7955)]

 Score = 239 (89.2 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 42/71 (59%), Positives = 60/71 (84%)

Query:     1 MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
             M+PE+ K WEE+E+ + +  +Q  +DP+PFQLVERTSL K H++FSL+G++HAYVT+IG+
Sbjct:   712 MTPEEIKAWEEKELDKPIGIDQIRVDPSPFQLVERTSLHKTHTLFSLLGLSHAYVTSIGK 771

Query:    61 LVGVVGLKEVR 71
             LVGVV LKE++
Sbjct:   772 LVGVVALKELQ 782

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NAL0 F1NAL0 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 229 (85.7 bits), Expect = 6.4e-18, P = 6.4e-18
 Identities = 41/71 (57%), Positives = 59/71 (83%)

Query:     1 MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
             M+PE+   WE+EE+ + V FE C IDP+PFQLVERTSL K H++FSL+G++HAYVT++G+
Sbjct:   737 MTPEEIDAWEQEELEKDVCFECCRIDPSPFQLVERTSLHKTHTLFSLLGLSHAYVTSMGK 796

Query:    61 LVGVVGLKEVR 71
             L GV+ L+E++
Sbjct:   797 LKGVLALEELQ 807

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019227 "neuronal action potential propagation" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P35525	CLCN2_RAT	No assigned EC number	0.6527	0.6857	0.0793	yes	N/A
Q9R0A1	CLCN2_MOUSE	No assigned EC number	0.6527	0.6857	0.0792	yes	N/A
P51789	CLCN2_RABIT	No assigned EC number	0.6527	0.6857	0.0801	yes	N/A
P51788	CLCN2_HUMAN	No assigned EC number	0.6619	0.6761	0.0790	yes	N/A
Q9WU45	CLCN2_CAVPO	No assigned EC number	0.6527	0.6857	0.0798	yes	N/A
Q9VGH7	CLCN2_DROME	No assigned EC number	0.7260	0.6761	0.0595	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	105
cd04591	105	cd04591, CBS_pair_EriC_assoc_euk_bac, This cd cont	1e-20

>gnl|CDD|239964 cd04591, CBS_pair_EriC_assoc_euk_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

 Score = 78.8 bits (195), Expect = 1e-20
 Identities = 22/50 (44%), Positives = 32/50 (64%)

Query: 24  HIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND 73
           +IDP+PF +  RTSL KVH +F  +G+ H  V   GRLVG++  K++   
Sbjct: 56  YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDEGRLVGIITRKDLLKA 105

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
KOG0476|consensus	931		99.91
KOG0474|consensus	762		99.22
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.08
KOG0475|consensus	696		98.91
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	98.66
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.56
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.56
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.53
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.52
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.5
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.49
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.49
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.49
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.44
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.43
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.42
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.41
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.38
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.38
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.37
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.37
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.37
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.34
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.33
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.33
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.33
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.32
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.31
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.31
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.3
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.3
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.3
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.29
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.29
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.29
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.28
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.28
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.28
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.28
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.27
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.27
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.26
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.25
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.25
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.25
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.23
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.23
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.23
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.21
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.21
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.2
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.19
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.19
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.19
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.18
COG2524	294	Predicted transcriptional regulator, contains C-te	98.18
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.18
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.17
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.17
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.16
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.16
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.16
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.16
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.16
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.15
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.15
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.14
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.13
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.13
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.13
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.13
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.12
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.12
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.12
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.11
COG2524	294	Predicted transcriptional regulator, contains C-te	98.11
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.1
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.09
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.09
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.06
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.06
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.05
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.05
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.03
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.03
COG0517	117	FOG: CBS domain [General function prediction only]	98.03
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.02
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.02
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.02
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.01
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.01
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.01
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.01
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.0
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.0
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	97.98
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	97.98
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	97.97
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	97.97
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	97.97
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	97.97
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	97.97
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	97.96
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	97.96
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	97.96
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	97.95
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	97.94
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	97.94
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	97.93
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	97.93
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	97.93
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	97.93
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	97.92
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	97.92
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	97.9
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	97.9
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	97.9
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	97.89
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	97.89
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	97.89
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	97.89
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	97.89
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	97.89
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	97.87
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	97.87
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	97.86
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	97.86
COG0517	117	FOG: CBS domain [General function prediction only]	97.85
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	97.85
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	97.84
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	97.84
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	97.83
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	97.83
PRK01862	574	putative voltage-gated ClC-type chloride channel C	97.82
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	97.8
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	97.8
PRK14869	546	putative manganese-dependent inorganic pyrophospha	97.79
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	97.79
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	97.78
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	97.75
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	97.75
COG2905	610	Predicted signal-transduction protein containing c	97.75
PRK14869	546	putative manganese-dependent inorganic pyrophospha	97.74
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	97.73
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.71
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	97.7
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	97.7
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	97.68
PLN02274	505	inosine-5'-monophosphate dehydrogenase	97.64
COG3620	187	Predicted transcriptional regulator with C-termina	97.6
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	97.6
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	97.59
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.56
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	97.54
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	97.53
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	97.5
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	97.49
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	97.48
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	97.46
PLN02274	505	inosine-5'-monophosphate dehydrogenase	97.46
COG4109	432	Predicted transcriptional regulator containing CBS	97.43
COG3620	187	Predicted transcriptional regulator with C-termina	97.39
PRK01862	574	putative voltage-gated ClC-type chloride channel C	97.36
COG3448	382	CBS-domain-containing membrane protein [Signal tra	97.35
COG3448	382	CBS-domain-containing membrane protein [Signal tra	97.35
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.33
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.32
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	97.28
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	97.22
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	97.22
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	97.19
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	97.16
COG1253	429	TlyC Hemolysins and related proteins containing CB	97.11
PRK11573	413	hypothetical protein; Provisional	97.1
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	96.99
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	96.96
COG2905	610	Predicted signal-transduction protein containing c	96.94
KOG1764|consensus	381		96.91
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	96.89
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	96.69
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	96.45
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	96.27
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	95.99
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	95.81
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	95.72
KOG2550|consensus	503		94.87
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	93.39
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	91.78
KOG1764|consensus	381		91.56
PRK11573	413	hypothetical protein; Provisional	90.33
COG4109	432	Predicted transcriptional regulator containing CBS	88.18
COG1253	429	TlyC Hemolysins and related proteins containing CB	86.84
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	86.68
KOG2550|consensus	503		86.66
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	85.67

>KOG0476|consensus

Probab=99.91  E-value=2.6e-25  Score=195.22  Aligned_cols=77  Identities=61%  Similarity=1.014  Sum_probs=75.4

Q ss_pred             CChHHHHhHHHHHhcCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccC
Q psy6637           1 MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus         1 ~~~~e~~~we~~~l~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~   77 (105)
                      |++|||++||+++|.+++|++.|.|||+||||++.|||+|||+||++||++|+|||+.|||||||++|||+|||++-
T Consensus       784 ~~~eei~~we~~~l~~~ld~~~~~IDpaPfQLve~TSL~K~HtLFSLLgL~~AYVT~~GrLvGVValkELRkAie~I  860 (931)
T KOG0476|consen  784 LSAEEIKEWEEEQLSQKLDLDECAIDPAPFQLVEGTSLYKVHTLFSLLGLNHAYVTSCGRLVGVVALKELRKAIENI  860 (931)
T ss_pred             cChhhhhHHHHHHhccccchhhCCCCCCceeeeccchHHHHHHHHHHhccchhhhcccCcEEEEEEHHHHHHHHHhc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999983

>KOG0474|consensus

Probab=99.22  E-value=1.4e-11  Score=107.81  Aligned_cols=64  Identities=28%  Similarity=0.524  Sum_probs=59.5

Q ss_pred             hHHHHHhcCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637           8 KWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN   72 (105)
Q Consensus         8 ~we~~~l~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k   72 (105)
                      ...++++++++|++++ +||+|++|.++||+.++..+|+.||+||++|+. ..+++|++|+||+.+
T Consensus       680 ~lt~~e~~~yvDl~p~-~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~  744 (762)
T KOG0474|consen  680 HLTSEEMEMYVDLHPF-MNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLAR  744 (762)
T ss_pred             hcchHhHhhccccccc-cCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhh
Confidence            4567899999999999 999999999999999999999999999999997 677799999999973

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.08  E-value=7.5e-10  Score=65.98  Aligned_cols=51  Identities=22%  Similarity=0.369  Sum_probs=48.2

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEe-eCCeEEEEEehHHHHHhhc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVT-AIGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt-~~GrLVGvVT~kDL~kaI~   75 (105)
                      +.+.++++.+++|+.+|...|...+.++++|+ ++|+++|+||.+||.+++.
T Consensus         5 m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    5 MTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             SBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred             CcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence            66789999999999999999999999999999 5999999999999999874

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>KOG0475|consensus

Probab=98.91  E-value=2e-09  Score=94.24  Aligned_cols=60  Identities=22%  Similarity=0.463  Sum_probs=56.6

Q ss_pred             hcCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhh
Q psy6637          14 MGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        14 l~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI   74 (105)
                      ....++++.. +|.+||+|..+||+..+.++|+.+|++++.|+++|+|.|+||+||++++.
T Consensus       635 ~~~~~~lk~i-l~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  635 IPSRLDLKDI-LDMTPFTVTDLTPMETVVDLFRKLGLRQILVTKNGILLGIITKKDCLRHT  694 (696)
T ss_pred             CCCCcCceee-ccCCcccccccCcHHHHHHHHHhhCceEEEEccCCeeEeeeehHHHHHhh
Confidence            4567899988 99999999999999999999999999999999999999999999998875

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=98.66  E-value=7.9e-08  Score=63.37  Aligned_cols=49  Identities=45%  Similarity=0.769  Sum_probs=46.0

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND   73 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka   73 (105)
                      +.+.|+++.+++++.++..+|...++++++|+++|+++|+||++|+.++
T Consensus        57 m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~~~~~Gvvt~~dl~~~  105 (105)
T cd04591          57 IDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDEGRLVGIITRKDLLKA  105 (105)
T ss_pred             ccCCCceECCCCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEhhhhhcC
Confidence            6677889999999999999999999999999999999999999999764

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.56  E-value=1.5e-07  Score=60.50  Aligned_cols=55  Identities=16%  Similarity=0.216  Sum_probs=48.5

Q ss_pred             ccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC--CeEEEEEehHHHHHh
Q psy6637          18 VSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI--GRLVGVVGLKEVRND   73 (105)
Q Consensus        18 idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~--GrLVGvVT~kDL~ka   73 (105)
                      .....+ +++.+.++.+++++..++..|...+.++++|++.  |+++|+||.+|+.++
T Consensus        58 ~~v~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~~  114 (114)
T cd04613          58 VVASDI-MTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLSA  114 (114)
T ss_pred             EEHHHh-ccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhcC
Confidence            344455 6788999999999999999999999999999986  999999999998763

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.56  E-value=1.4e-07  Score=63.72  Aligned_cols=54  Identities=20%  Similarity=0.269  Sum_probs=48.3

Q ss_pred             cCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637          19 SFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND   73 (105)
Q Consensus        19 dl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka   73 (105)
                      ++..+ +++.+..+.+++++.+|..+|...+.++++|++.|+++||||++|+.+|
T Consensus        82 ~v~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~~di~~~  135 (135)
T cd04586          82 KVADV-MTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLLRA  135 (135)
T ss_pred             CHHHH-hCCCceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEhHhhhcC
Confidence            34445 5677999999999999999999999999999999999999999999865

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.53  E-value=3.6e-07  Score=58.70  Aligned_cols=53  Identities=15%  Similarity=0.254  Sum_probs=47.0

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND   73 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka   73 (105)
                      +..+ +++.+..+.+++++..+..+|...+.++++|+++|+++|+||.+|+.++
T Consensus        61 ~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~~~~~Gvit~~di~~~  113 (113)
T cd04623          61 VSEI-MTRNVITVTPDDTVDEAMALMTERRFRHLPVVDGGKLVGIVSIGDVVKA  113 (113)
T ss_pred             HHHh-cCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeCCEEEEEEEHHHhhcC
Confidence            4445 5677899999999999999999999999999988999999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.52  E-value=3.3e-07  Score=59.28  Aligned_cols=52  Identities=19%  Similarity=0.280  Sum_probs=47.0

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHH
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRN   72 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~k   72 (105)
                      ...+ +++.++.+.+++++..+..+|...+.++++|+++|+++|+||++|+.+
T Consensus        58 ~~~~-~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvvt~~di~~  109 (110)
T cd04595          58 VKDY-MSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVEDGRLVGIVTRTDLLR  109 (110)
T ss_pred             HHHH-hcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEeCCEEEEEEEhHHhhc
Confidence            3345 667899999999999999999999999999999999999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.50  E-value=5.2e-07  Score=60.73  Aligned_cols=53  Identities=21%  Similarity=0.306  Sum_probs=47.5

Q ss_pred             cCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHH
Q psy6637          19 SFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRN   72 (105)
Q Consensus        19 dl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~k   72 (105)
                      ++..+ +++.|..+.+++++..+..+|...+.++++|++.|+++|+||++|+.+
T Consensus        79 ~v~~~-~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~~dl~~  131 (132)
T cd04636          79 KVEEI-MTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDIIR  131 (132)
T ss_pred             CHHHh-ccCCceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEHHHhhc
Confidence            44444 677899999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.49  E-value=2.6e-07  Score=60.78  Aligned_cols=55  Identities=18%  Similarity=0.260  Sum_probs=49.0

Q ss_pred             ccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637          18 VSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRND   73 (105)
Q Consensus        18 idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~ka   73 (105)
                      ..+..+ ++..+..+.+++++.++..+|...+.++++|++ .|+++|+||++|+.+|
T Consensus        69 ~~i~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~~  124 (124)
T cd04600          69 ETVGDI-MSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA  124 (124)
T ss_pred             ccHHHh-ccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhcC
Confidence            344555 677899999999999999999999999999998 8999999999999875

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.49  E-value=5.2e-07  Score=58.35  Aligned_cols=49  Identities=20%  Similarity=0.320  Sum_probs=45.3

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND   73 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka   73 (105)
                      ++..+..+.+++++..+..+|...+..+++|++.|+++|+||++||.++
T Consensus        64 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~~~~~Gvvt~~dl~~~  112 (112)
T cd04625          64 MNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDGGTLLGVISFHDVAKA  112 (112)
T ss_pred             hCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEECCEEEEEEEHHHhhcC
Confidence            5666889999999999999999999999999999999999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.49  E-value=3.7e-07  Score=59.05  Aligned_cols=49  Identities=14%  Similarity=0.232  Sum_probs=45.5

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND   73 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka   73 (105)
                      +++.++.+.+++++.++..+|...+.++++|+++|+++|+||++|+.++
T Consensus        66 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvit~~di~~~  114 (114)
T cd04629          66 MTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDDGKLVGQISRRDVLRA  114 (114)
T ss_pred             hccCceEECCCCcHHHHHHHHHHhCCCccCEEECCEEEEEEEHHHHhcC
Confidence            5677889999999999999999999999999988999999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.44  E-value=4.2e-07  Score=59.77  Aligned_cols=45  Identities=9%  Similarity=0.038  Sum_probs=42.1

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEee-C-CeEEEEEehHHHHHh
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA-I-GRLVGVVGLKEVRND   73 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~-GrLVGvVT~kDL~ka   73 (105)
                      ++++.+++++.+|..+|...++++++|++ + |+++|+||.+|+.++
T Consensus        52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~~   98 (98)
T cd04618          52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILKF   98 (98)
T ss_pred             eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhcC
Confidence            78999999999999999999999999998 4 899999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.43  E-value=8.1e-07  Score=57.35  Aligned_cols=48  Identities=21%  Similarity=0.405  Sum_probs=45.1

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHH
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRN   72 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~k   72 (105)
                      ++..+.++.+++++.++..+|...+..+++|++.|+++|+||++|+.+
T Consensus        63 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Giit~~di~~  110 (111)
T cd04800          63 MTAPPITIPPDATVFEALLLMLERGIHHLPVVDDGRLVGVISATDLLR  110 (111)
T ss_pred             hCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhc
Confidence            567889999999999999999999999999999899999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.42  E-value=8.9e-07  Score=57.88  Aligned_cols=49  Identities=10%  Similarity=0.205  Sum_probs=45.1

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND   73 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka   73 (105)
                      ++..+.++.+++++.+|..+|...+.++++|++.|+++|+||+.|+.+|
T Consensus        66 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~~~~Gvi~~~dl~~~  114 (114)
T cd04630          66 MTKPLISVSPDMDIKYCARLMERTNIRRAPVVENNELIGIISLTDIFLA  114 (114)
T ss_pred             hcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeCCEEEEEEEHHHhhcC
Confidence            5566889999999999999999999999999988999999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.41  E-value=1.1e-06  Score=56.10  Aligned_cols=47  Identities=15%  Similarity=0.230  Sum_probs=44.9

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHH
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVR   71 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~   71 (105)
                      +++.+..+.+++++..+...|...+.++++|+++|+++|+||.+++.
T Consensus        57 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~~l~  103 (105)
T cd04599          57 MTREVVTISPEASLLEAKRLMEEKKIERLPVLRERKLVGIITKGTIA  103 (105)
T ss_pred             ccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEECCEEEEEEEHHHhc
Confidence            67889999999999999999999999999999999999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.38  E-value=1.2e-06  Score=56.80  Aligned_cols=52  Identities=12%  Similarity=0.072  Sum_probs=46.9

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND   73 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka   73 (105)
                      ..+ +.+.++++.+++++..+..+|...+.+.++|+++|+++|+||..|+.++
T Consensus        53 ~~~-~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~iGvit~~dl~~~  104 (104)
T cd04594          53 VDY-IVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDDGKFKGIVTLDSILDA  104 (104)
T ss_pred             hhh-hhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEECCEEEEEEEHHHhhcC
Confidence            344 5677899999999999999999999999999999999999999998764

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.38  E-value=9.2e-07  Score=57.89  Aligned_cols=48  Identities=21%  Similarity=0.253  Sum_probs=45.1

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHH
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRN   72 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~k   72 (105)
                      ++..+..+.+++++.++..+|...+.++++|+++|+++|+||.+|+.+
T Consensus        73 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~dl~~  120 (121)
T cd04633          73 MTRPVITIEPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDILR  120 (121)
T ss_pred             ccCCceEECCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEHHHhhc
Confidence            567899999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.37  E-value=1.1e-06  Score=57.84  Aligned_cols=53  Identities=15%  Similarity=0.194  Sum_probs=47.2

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHh
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRND   73 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~ka   73 (105)
                      +..+ +.+.+..+.+++++.++..+|...+.++++|++. |+++|+||++|+.++
T Consensus        72 ~~~~-~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~~  125 (125)
T cd04631          72 VRSI-MTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA  125 (125)
T ss_pred             HHHH-hcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence            4445 5678999999999999999999999999999985 999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.37  E-value=1.1e-06  Score=56.64  Aligned_cols=53  Identities=19%  Similarity=0.260  Sum_probs=47.0

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHh
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRND   73 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~ka   73 (105)
                      ...+ ++..+.++.+++++.++...|..-+..+++|++. |+++|+||++|+.++
T Consensus        60 ~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~~  113 (113)
T cd04622          60 VGDV-MTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLARA  113 (113)
T ss_pred             HHHh-ccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhcC
Confidence            3344 6778999999999999999999999999999975 999999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.37  E-value=1.3e-06  Score=57.04  Aligned_cols=49  Identities=12%  Similarity=0.158  Sum_probs=45.6

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND   73 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka   73 (105)
                      +++.+..+.+++++.++..+|...+..+++|+++|+++|+||.+|+.++
T Consensus        73 ~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~~di~~~  121 (121)
T cd04584          73 MTKDVITVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLLRT  121 (121)
T ss_pred             hhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHhhcC
Confidence            5678899999999999999999999999999988999999999998764

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.34  E-value=1.5e-06  Score=57.07  Aligned_cols=48  Identities=17%  Similarity=0.091  Sum_probs=43.8

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN   72 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k   72 (105)
                      +...+.++.+++++..|..+|...+.++++|++ .|+++|+||..|+.+
T Consensus        62 ~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          62 YIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             eecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            456678899999999999999999999999998 599999999999876

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.33  E-value=1.5e-06  Score=57.12  Aligned_cols=48  Identities=17%  Similarity=0.200  Sum_probs=44.7

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN   72 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k   72 (105)
                      ++..+..+.+++++.++..+|...+.++++|++ +|+++|+||++|+.+
T Consensus        65 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          65 MTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             hcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            677889999999999999999999999999998 589999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.33  E-value=1.6e-06  Score=55.63  Aligned_cols=51  Identities=18%  Similarity=0.337  Sum_probs=45.3

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHH
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRN   72 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~k   72 (105)
                      ..+ +++.++.+.+++++.++...|...+.++++|++. |+++|+||++|+.+
T Consensus        59 ~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          59 GEV-MSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             HHh-cCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence            344 5678899999999999999999999999999975 99999999999865

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.33  E-value=1.7e-06  Score=56.10  Aligned_cols=53  Identities=15%  Similarity=0.225  Sum_probs=46.8

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHh
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRND   73 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~ka   73 (105)
                      +..+ +.+.+.++.+++++.++...|...+..+++|++. |+++|+||++|+.++
T Consensus        69 ~~~~-~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~~  122 (122)
T cd04585          69 VSDI-MTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFRA  122 (122)
T ss_pred             HHHh-ccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhhC
Confidence            3344 5678999999999999999999999999999985 999999999999763

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.32  E-value=2.4e-06  Score=55.29  Aligned_cols=49  Identities=12%  Similarity=0.113  Sum_probs=45.3

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND   73 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka   73 (105)
                      +++.++.+.+++++.++..+|...+...++|+++|+++|+||..|+.++
T Consensus        63 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~dl~~~  111 (111)
T cd04589          63 ATFPLITVDPDDFLFNALLLMTRHRIHRVVVREGGEVVGVLEQTDLLSF  111 (111)
T ss_pred             hCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeCCEEEEEEEhHHhhcC
Confidence            6677889999999999999999999999999999999999999998753

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.31  E-value=1.8e-06  Score=55.35  Aligned_cols=48  Identities=19%  Similarity=0.248  Sum_probs=44.4

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHH
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRN   72 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~k   72 (105)
                      +.+.+..+.+++++.++...|...+.++++|++. |+++|+||.+|+.+
T Consensus        62 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          62 MTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             ccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence            5677899999999999999999999999999985 99999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.31  E-value=2.6e-06  Score=54.87  Aligned_cols=49  Identities=14%  Similarity=0.266  Sum_probs=45.1

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND   73 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka   73 (105)
                      ++..+.++.+++++.++..+|...+.+.++|+++|+++|+||.+|+.++
T Consensus        58 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~~~~G~it~~d~~~~  106 (106)
T cd04638          58 MTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDDGKLVGIVTVADIVRA  106 (106)
T ss_pred             hcCCCceECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhhcC
Confidence            5677888999999999999999999999999999999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.30  E-value=2e-06  Score=55.45  Aligned_cols=52  Identities=17%  Similarity=0.260  Sum_probs=45.9

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHH
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRN   72 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~k   72 (105)
                      +..+ +...+.++.+++++.++...|...+.++++|++. |+++|+||++|+.+
T Consensus        57 v~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          57 VKDV-MTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             HHHH-hcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence            3344 5678899999999999999999999999999985 99999999999865

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.30  E-value=2.8e-06  Score=46.14  Aligned_cols=46  Identities=22%  Similarity=0.310  Sum_probs=41.7

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHhh
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRNDS   74 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~kaI   74 (105)
                      +..+.+++++..+...|...+.++++|++. |+++|+++.+++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            467888999999999999999999999985 8999999999998875

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.30  E-value=2.2e-06  Score=56.65  Aligned_cols=45  Identities=13%  Similarity=0.194  Sum_probs=41.7

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHH
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRN   72 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~k   72 (105)
                      .+.++.+++++.++..+|...+.++++|++. |+++|+||+.|+.+
T Consensus        74 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          74 GVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             CCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence            4679999999999999999999999999984 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.29  E-value=2.1e-06  Score=55.41  Aligned_cols=52  Identities=23%  Similarity=0.227  Sum_probs=46.2

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHH
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRN   72 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~k   72 (105)
                      ...+ ++..+..+.+++++.++..+|...+.++++|++. |+++|+||++|+.+
T Consensus        58 v~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          58 VRGV-MRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             HHHH-hcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence            3444 5677889999999999999999999999999986 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.29  E-value=2.3e-06  Score=55.37  Aligned_cols=48  Identities=19%  Similarity=0.277  Sum_probs=44.3

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHH
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRN   72 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~k   72 (105)
                      ++..+..+.+++++..|...|...+...++|++.|+++|+||..|+.+
T Consensus        63 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~di~~  110 (111)
T cd04626          63 VSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDDNKLIGVVRTKDILD  110 (111)
T ss_pred             hcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEhHHhcc
Confidence            567788999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.29  E-value=2.5e-06  Score=56.60  Aligned_cols=48  Identities=17%  Similarity=0.284  Sum_probs=44.2

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN   72 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k   72 (105)
                      +...+..+.+++++.+|..+|...+.++++|++ +|+++|+||+.|++.
T Consensus        74 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~~  122 (123)
T cd04627          74 GTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVRL  122 (123)
T ss_pred             CcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhhc
Confidence            567788999999999999999999999999997 699999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.28  E-value=1.7e-06  Score=56.75  Aligned_cols=54  Identities=17%  Similarity=0.218  Sum_probs=47.7

Q ss_pred             ccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHH
Q psy6637          18 VSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRN   72 (105)
Q Consensus        18 idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~k   72 (105)
                      .++..+ ++..+..+.+++++..+..+|...+.++++|++. |+++|+||.+|+.+
T Consensus        67 ~~v~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          67 VPVAEV-MKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             cCHHHh-hCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            344555 6788899999999999999999999999999986 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.28  E-value=2.3e-06  Score=67.20  Aligned_cols=51  Identities=10%  Similarity=0.215  Sum_probs=47.2

Q ss_pred             ccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637          22 QCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND   73 (105)
Q Consensus        22 ~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka   73 (105)
                      .+ +.+.|.++.+++++.+|..+|...++++++|++.|+++||||+.|+.++
T Consensus       273 ~i-m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~dil~~  323 (326)
T PRK10892        273 DV-MTPGGIRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDLLRA  323 (326)
T ss_pred             Hh-cCCCCEEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHhHhc
Confidence            44 5678899999999999999999999999999999999999999999875

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.28  E-value=2.2e-06  Score=55.68  Aligned_cols=45  Identities=9%  Similarity=0.140  Sum_probs=42.4

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHh
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRND   73 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~ka   73 (105)
                      +.++.+++++.++..+|...+.++++|.+. |+++|+||++|+.+|
T Consensus        51 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~~   96 (96)
T cd04614          51 VVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLKP   96 (96)
T ss_pred             cEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhcC
Confidence            888999999999999999999999999985 999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.28  E-value=2.9e-06  Score=55.74  Aligned_cols=47  Identities=11%  Similarity=0.080  Sum_probs=42.9

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEee--CCeEEEEEehHHHHHhhc
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA--IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~--~GrLVGvVT~kDL~kaI~   75 (105)
                      .+++.+++|+.+|..+|...++++++|++  +|+++|+||.+|+.+++.
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~   51 (98)
T cd04618           3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR   51 (98)
T ss_pred             EEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee
Confidence            57899999999999999999999999997  389999999999998763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.27  E-value=2.1e-06  Score=55.87  Aligned_cols=50  Identities=16%  Similarity=0.300  Sum_probs=45.2

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHH
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVR   71 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~   71 (105)
                      ..+ +++.+.++.+++++..+..+|...+.++++|++ +|+++|+||++|+.
T Consensus        61 ~~~-~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~  111 (113)
T cd04607          61 SEV-MNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL  111 (113)
T ss_pred             HHh-hcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence            345 677788999999999999999999999999997 79999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.27  E-value=2.7e-06  Score=55.76  Aligned_cols=49  Identities=14%  Similarity=0.230  Sum_probs=44.7

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRND   73 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~ka   73 (105)
                      +...|..+.+++++.++...|...+.++++|++ +|+++|+||+.|+.+|
T Consensus        73 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~~  122 (122)
T cd04635          73 MSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLKA  122 (122)
T ss_pred             hcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhcC
Confidence            456789999999999999999999999999997 5999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.26  E-value=3.2e-06  Score=55.18  Aligned_cols=51  Identities=14%  Similarity=0.204  Sum_probs=46.0

Q ss_pred             ccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC---CeEEEEEehHHHHHh
Q psy6637          22 QCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI---GRLVGVVGLKEVRND   73 (105)
Q Consensus        22 ~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~---GrLVGvVT~kDL~ka   73 (105)
                      .+ +.+.+..+.+++++.++..+|...+.++++|++.   |+++|+||+.|+.+|
T Consensus        62 ~~-~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~  115 (115)
T cd04593          62 EV-ATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA  115 (115)
T ss_pred             Hh-ccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence            44 5678999999999999999999999999999974   799999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.25  E-value=3.2e-06  Score=54.75  Aligned_cols=53  Identities=19%  Similarity=0.348  Sum_probs=46.7

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRND   73 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~ka   73 (105)
                      +..+ ++..+..+.+++++.++..+|...+.+.++|++ +|+++|+||.+|+.++
T Consensus        55 v~~~-~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~~  108 (108)
T cd04596          55 IEKV-MTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLKA  108 (108)
T ss_pred             HHHH-hcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhcC
Confidence            3344 567788999999999999999999999999997 7999999999998763

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.25  E-value=2.2e-06  Score=55.31  Aligned_cols=49  Identities=18%  Similarity=0.353  Sum_probs=44.8

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRND   73 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~ka   73 (105)
                      +++.+..+.+++++.++..+|...+.++++|++ +|+++|+||..|+..|
T Consensus        64 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~~  113 (113)
T cd04587          64 MTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTHA  113 (113)
T ss_pred             cCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhccC
Confidence            677889999999999999999999999999998 5999999999998753

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.25  E-value=3.8e-06  Score=54.46  Aligned_cols=53  Identities=19%  Similarity=0.263  Sum_probs=47.2

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      ..+ +++.+..+.+++++..+..+|...+..+++|++ +|+++|+||+.||.+++
T Consensus        56 ~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~~  109 (109)
T cd04606          56 SDI-MDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDVI  109 (109)
T ss_pred             HHH-hCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhhC
Confidence            344 567789999999999999999999999999997 79999999999998864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.23  E-value=4.9e-06  Score=53.35  Aligned_cols=50  Identities=22%  Similarity=0.198  Sum_probs=45.3

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhcc
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~   76 (105)
                      |.++.+.+++++.++..+|...+.++++|+++|+++|+|+.+||.++...
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~   50 (111)
T cd04612           1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIRRVPAE   50 (111)
T ss_pred             CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHHHHhc
Confidence            46888999999999999999999999999988999999999999886643

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.23  E-value=5.2e-06  Score=52.98  Aligned_cols=49  Identities=14%  Similarity=0.152  Sum_probs=44.4

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhcc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~   76 (105)
                      .++++.+++++.++...|...+.++++|++.|+++|+||.+|+.+++..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~   50 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIE   50 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhc
Confidence            3578899999999999999999999999988999999999999998643

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.23  E-value=4.3e-06  Score=54.01  Aligned_cols=50  Identities=14%  Similarity=0.288  Sum_probs=44.5

Q ss_pred             ccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637          22 QCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN   72 (105)
Q Consensus        22 ~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k   72 (105)
                      .+ +++.+..+.+++++..+..+|...++..++|++ +|+++|+||++|+.+
T Consensus        61 ~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          61 EI-MTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             Hh-ccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence            44 567788999999999999999999999999987 599999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.21  E-value=2.4e-06  Score=55.71  Aligned_cols=44  Identities=16%  Similarity=0.308  Sum_probs=40.8

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHH
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRN   72 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~k   72 (105)
                      ++++.+++++..|..+|...+.++++|++. |+++|+||++|+.+
T Consensus        69 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          69 LVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             ceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            568999999999999999999999999985 99999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.21  E-value=4.8e-06  Score=54.15  Aligned_cols=49  Identities=22%  Similarity=0.371  Sum_probs=42.6

Q ss_pred             cCCCceEEecc--CCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637          25 IDPAPFQLVER--TSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRND   73 (105)
Q Consensus        25 id~sP~qv~~~--tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~ka   73 (105)
                      +...+.++.++  +++.+|..+|...+...++|++ +|+++|+||+.|+.++
T Consensus        64 ~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~~  115 (115)
T cd04620          64 MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQV  115 (115)
T ss_pred             cCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhcC
Confidence            44557778776  7999999999999999999997 5999999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.20  E-value=7.5e-06  Score=53.77  Aligned_cols=48  Identities=21%  Similarity=0.222  Sum_probs=43.7

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~   75 (105)
                      .+.++.+++++.++..+|...++++++|++.|+++|+||.+|+.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~   49 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYLKAIS   49 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHHHHH
Confidence            367889999999999999999999999999999999999999988753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.19  E-value=4.4e-06  Score=57.61  Aligned_cols=48  Identities=17%  Similarity=0.239  Sum_probs=44.6

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHH
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRN   72 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~k   72 (105)
                      +++.+.++.+++++.++..+|...+.++++|++.|+++|+||++|+.+
T Consensus        95 ~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~~Gvvt~~dl~~  142 (143)
T cd04634          95 MTKKVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTRGDIIE  142 (143)
T ss_pred             cCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhhc
Confidence            567899999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.19  E-value=6.2e-06  Score=56.75  Aligned_cols=49  Identities=8%  Similarity=0.184  Sum_probs=44.8

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND   73 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka   73 (105)
                      +.+.+..+.+++++.+|..+|...+.++++|+++|+++|+||..|+.++
T Consensus        87 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~~di~~~  135 (135)
T cd04621          87 MTEEIITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITKTDICRE  135 (135)
T ss_pred             cCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEHHHHhhC
Confidence            5566788999999999999999999999999999999999999998763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.19  E-value=5.6e-06  Score=55.25  Aligned_cols=48  Identities=17%  Similarity=0.264  Sum_probs=43.5

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN   72 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k   72 (105)
                      +...+..+.+++++.+|..+|..-++++++|++ +|+++|+||..|+.+
T Consensus        77 ~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          77 KSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             ccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            455688899999999999999999999999998 499999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.18  E-value=5.9e-06  Score=55.53  Aligned_cols=52  Identities=13%  Similarity=0.217  Sum_probs=45.4

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN   72 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k   72 (105)
                      ...+ +.+.+.++.+++++.++..+|...+.+.++|++ +|+++|+||.+||.+
T Consensus        60 v~di-m~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          60 VRDV-INRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             HHHh-cCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            3344 456788999999999999999999999999997 699999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=98.18  E-value=3.5e-06  Score=68.05  Aligned_cols=53  Identities=15%  Similarity=0.250  Sum_probs=50.5

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccC
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~   77 (105)
                      +-+.|+++.+++|+.++..+|...|+|.+||.+++++||++|..|+.+||...
T Consensus       178 ~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~aia~g  230 (294)
T COG2524         178 MSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIANG  230 (294)
T ss_pred             ccCCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHHHHHHcC
Confidence            56789999999999999999999999999999999999999999999999874

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.18  E-value=7.1e-06  Score=53.10  Aligned_cols=48  Identities=23%  Similarity=0.369  Sum_probs=44.0

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~   75 (105)
                      .|+.+.+++++.++..+|...+.++++|++.|+++|+|+.+|+.++..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~~~~~   49 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASP   49 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHHHhhh
Confidence            467889999999999999999999999999999999999999988764

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.17  E-value=6.9e-06  Score=52.46  Aligned_cols=48  Identities=15%  Similarity=0.234  Sum_probs=43.9

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN   72 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k   72 (105)
                      +++.+..+.+++++..+..+|..-+..+++|++ +|+++|+||..|+.+
T Consensus        58 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          58 MSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             CCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence            567789999999999999999999999999986 689999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.17  E-value=7.7e-06  Score=52.81  Aligned_cols=51  Identities=16%  Similarity=0.230  Sum_probs=45.6

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHH
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRN   72 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~k   72 (105)
                      ..+ +++.+..+.+++++.++..+|...+...++|++.++++|+||++|+.+
T Consensus        61 ~~~-~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~di~~  111 (112)
T cd04802          61 GEV-MSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDDELVGIVTTTDIVM  111 (112)
T ss_pred             HHh-cCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCCEEEEEEEhhhhhc
Confidence            344 567788999999999999999999999999999889999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.16  E-value=6.3e-06  Score=53.06  Aligned_cols=52  Identities=13%  Similarity=0.178  Sum_probs=46.4

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN   72 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k   72 (105)
                      ...+ +++.+..+.+++++.++..+|..-+...++|++ +|+++|+||..||.+
T Consensus        61 v~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          61 VADV-MTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             HHHh-hccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence            3445 677788999999999999999999999999997 899999999999875

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.16  E-value=1.1e-05  Score=51.96  Aligned_cols=49  Identities=22%  Similarity=0.317  Sum_probs=44.2

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhcc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~   76 (105)
                      .++++.+++++.++..+|...+.++++|++.|+++|+|+.+|+.++...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~~~~~   50 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAHAIAR   50 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhc
Confidence            4678899999999999999999999999988999999999999987643

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.16  E-value=5.4e-06  Score=55.17  Aligned_cols=53  Identities=11%  Similarity=0.083  Sum_probs=46.0

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC---CeEEEEEehHHHHHh
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI---GRLVGVVGLKEVRND   73 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~---GrLVGvVT~kDL~ka   73 (105)
                      +..+ ++..++++.+++++.++..+|...+.+.++|+++   |+++|+||++|+.++
T Consensus        73 ~~~~-~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~~  128 (128)
T cd04632          73 VYDA-MSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA  128 (128)
T ss_pred             HHHH-hcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence            3445 6677889999999999999999999999999965   999999999998763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.16  E-value=6.9e-06  Score=52.49  Aligned_cols=52  Identities=21%  Similarity=0.248  Sum_probs=46.2

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN   72 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k   72 (105)
                      ...+ +...+..+.+++++.++..+|...+.++++|++ +|+++|+||++|+.+
T Consensus        56 v~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          56 LEDI-MLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             HhHh-hcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence            4444 667889999999999999999999999999997 699999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.16  E-value=5.8e-06  Score=53.30  Aligned_cols=46  Identities=22%  Similarity=0.239  Sum_probs=41.7

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHH
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRN   72 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~k   72 (105)
                      ..+..+.+++++..+..+|...+.++++|++. |+++|+||++|+.+
T Consensus        64 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          64 RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence            34778999999999999999999999999974 99999999999864

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.15  E-value=8.6e-06  Score=56.87  Aligned_cols=49  Identities=12%  Similarity=0.070  Sum_probs=44.5

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      .+.++.+++++.+|...|...+..++||++ +|+++|+||.+||.+++..
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~   51 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFT   51 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhh
Confidence            467899999999999999999999999997 6999999999999988754

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.15  E-value=8.9e-06  Score=53.03  Aligned_cols=49  Identities=22%  Similarity=0.262  Sum_probs=44.4

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      |.|..+.+++++.++...|...+..+++|++ +|+++|+|+.+||.+++.
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~   50 (115)
T cd04593           1 PPPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALE   50 (115)
T ss_pred             CCCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHh
Confidence            4577889999999999999999999999997 599999999999998764

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.14  E-value=1e-05  Score=52.21  Aligned_cols=48  Identities=15%  Similarity=0.179  Sum_probs=43.1

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHhhc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~kaI~   75 (105)
                      .+..+.+++++..+..+|...+.++++|+++ |+++|+||.+|+++++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~   50 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVA   50 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHh
Confidence            4678899999999999999999999999984 99999999999988764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.13  E-value=6.2e-06  Score=54.45  Aligned_cols=45  Identities=11%  Similarity=0.053  Sum_probs=41.5

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEeeC----CeEEEEEehHHHHH
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAI----GRLVGVVGLKEVRN   72 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~----GrLVGvVT~kDL~k   72 (105)
                      .+.++.+++++..|..+|...++++++|++.    |+|+|+||+.||.+
T Consensus        69 ~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          69 NITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            5789999999999999999999999999974    69999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.13  E-value=9.1e-06  Score=52.00  Aligned_cols=48  Identities=19%  Similarity=0.309  Sum_probs=42.5

Q ss_pred             cCCCceEEec-cCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637          25 IDPAPFQLVE-RTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN   72 (105)
Q Consensus        25 id~sP~qv~~-~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k   72 (105)
                      ++..|..+.. ++++.+|..+|...+.+.++|++ +|+++|+||++|+.+
T Consensus        60 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          60 MTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             cccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            5555677777 99999999999999999999997 699999999999865

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.13  E-value=9.3e-06  Score=52.56  Aligned_cols=48  Identities=15%  Similarity=0.157  Sum_probs=43.5

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      +.++.+++++.++..+|...+++.++|++ +|+++|+|+.+|+.+++..
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~   51 (116)
T cd04643           3 VAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKG   51 (116)
T ss_pred             cEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhc
Confidence            56789999999999999999999999997 5899999999999988753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.13  E-value=1.1e-05  Score=51.95  Aligned_cols=52  Identities=8%  Similarity=0.136  Sum_probs=45.4

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN   72 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k   72 (105)
                      ...+ ++..+.++.+++++.++..+|..-+.++++|.+ +|+++|+||++|+.+
T Consensus        57 ~~~~-~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          57 VEDI-MTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             HHHh-cCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            3344 567788999999999999999999999999986 689999999999865

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.12  E-value=1.1e-05  Score=53.32  Aligned_cols=47  Identities=19%  Similarity=0.124  Sum_probs=42.8

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      +.++.+++|+.++..+|...+.++++|++ .|+++|+||.+|+.++..
T Consensus         3 ~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~   50 (120)
T cd04641           3 IATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAK   50 (120)
T ss_pred             cEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHh
Confidence            56789999999999999999999999996 799999999999998653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.12  E-value=7.3e-06  Score=64.05  Aligned_cols=51  Identities=16%  Similarity=0.270  Sum_probs=46.8

Q ss_pred             ccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637          22 QCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRND   73 (105)
Q Consensus        22 ~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~ka   73 (105)
                      .+ +.+.|.++.+++++.+|...|...++.+++|++ +|+++|+||++|+.+|
T Consensus       267 ~i-m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        267 EA-MTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             Hh-cCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence            45 667889999999999999999999999999998 6999999999999875

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.12  E-value=1.1e-05  Score=51.57  Aligned_cols=47  Identities=17%  Similarity=0.207  Sum_probs=42.6

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      .|.++.+++++..|...|...+.++++|++ +|+++|+||.+|+.++.
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~   49 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS   49 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc
Confidence            467889999999999999999999999997 79999999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.11  E-value=1.1e-05  Score=53.18  Aligned_cols=47  Identities=32%  Similarity=0.375  Sum_probs=43.1

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      ++++.+++++..+...|...+++.+||++ +|+++|+||.+|+.++..
T Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~   50 (118)
T cd04617           3 PVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI   50 (118)
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH
Confidence            57899999999999999999999999997 599999999999988774

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=98.11  E-value=6e-06  Score=66.72  Aligned_cols=52  Identities=13%  Similarity=0.194  Sum_probs=49.4

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      |-+.++++.+++.++.|..+|..-|+.++.||+ +|+.||+||+.|+++.|.+
T Consensus       240 M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~  292 (294)
T COG2524         240 MRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG  292 (294)
T ss_pred             hccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence            668899999999999999999999999999999 9999999999999998854

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.10  E-value=1.3e-05  Score=54.20  Aligned_cols=48  Identities=19%  Similarity=0.323  Sum_probs=43.6

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      +.|+++.+++++.++..+|+..+.+++||++ .|+++|+||.+|+.+.+
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~   50 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSL   50 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHH
Confidence            4688999999999999999999999999997 59999999999998654

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.09  E-value=1.4e-05  Score=50.81  Aligned_cols=47  Identities=19%  Similarity=0.309  Sum_probs=42.7

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhh
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI   74 (105)
                      .++.+.+++++..+...|...+.+.++|+++|+++|+||.+|+.++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~~~~   48 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVRRAH   48 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhhccc
Confidence            36778999999999999999999999999999999999999998753

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.09  E-value=1.8e-05  Score=51.02  Aligned_cols=48  Identities=19%  Similarity=0.257  Sum_probs=42.8

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~   75 (105)
                      ...++.+++++.++...|...+...++|++.|+++|+||.+|+.+++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~   49 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMA   49 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHH
Confidence            456789999999999999888888889999999999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.06  E-value=1.7e-05  Score=52.01  Aligned_cols=49  Identities=18%  Similarity=0.220  Sum_probs=44.1

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      +.+.++.+++++.++..+|..-+.++++|++ .|+++|+||.+||.+++.
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~   51 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHAR   51 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhc
Confidence            5678899999999999999999999999987 599999999999987764

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.06  E-value=2e-05  Score=49.17  Aligned_cols=48  Identities=23%  Similarity=0.292  Sum_probs=44.0

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHH
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRN   72 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~k   72 (105)
                      +...+..+.+++++..+...|...+..+++|++. |+++|+||..|+.+
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          64 MTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             hcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence            5677888999999999999999999999999974 99999999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.05  E-value=1.8e-05  Score=51.67  Aligned_cols=47  Identities=15%  Similarity=0.211  Sum_probs=43.0

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhc
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~   75 (105)
                      ++.+.+.+++.++..+|...+++.++|++.|+++|+||.+|+.+++.
T Consensus         3 ~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~   49 (121)
T cd04633           3 VITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALR   49 (121)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhh
Confidence            56788999999999999999999999999999999999999988654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.05  E-value=1.5e-05  Score=52.29  Aligned_cols=52  Identities=15%  Similarity=0.263  Sum_probs=46.1

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN   72 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k   72 (105)
                      ...+ ++..++.+.+++++.++..+|...+...++|.+ +|+++|+||++|+.+
T Consensus        69 ~~~~-~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          69 AHQI-MTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             HHHh-hcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            3445 667899999999999999999999999999986 599999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.03  E-value=2.5e-05  Score=50.21  Aligned_cols=48  Identities=23%  Similarity=0.303  Sum_probs=43.2

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      .++.+.+++++.++...|...+..+++|++ .|+++|+||.+++++++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~   51 (110)
T cd04605           3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA   51 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHh
Confidence            567889999999999999999999999997 589999999999987764

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.03  E-value=1.9e-05  Score=51.66  Aligned_cols=48  Identities=17%  Similarity=0.254  Sum_probs=42.2

Q ss_pred             cCCCceEEec--cCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637          25 IDPAPFQLVE--RTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN   72 (105)
Q Consensus        25 id~sP~qv~~--~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k   72 (105)
                      +.+.+..+..  ++++.++..+|...+.++++|++ +|+++|+||++|+.+
T Consensus        63 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          63 MTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             cCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence            4555667766  99999999999999999999997 699999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>COG0517 FOG: CBS domain [General function prediction only]

Probab=98.03  E-value=3e-05  Score=50.05  Aligned_cols=51  Identities=20%  Similarity=0.229  Sum_probs=48.5

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccC
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~   77 (105)
                      +.++++.+++++..|..++...++..++|.+.++|+|+||.+|+.+++...
T Consensus         7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~~~   57 (117)
T COG0517           7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAG   57 (117)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhcc
Confidence            789999999999999999999999999999999999999999999998655

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.02  E-value=2.9e-05  Score=50.01  Aligned_cols=46  Identities=17%  Similarity=0.232  Sum_probs=41.4

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND   73 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka   73 (105)
                      .+.++.+++++..+..+|...+.++++|++.|+++|+||.+|+.+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~   47 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALR   47 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHH
Confidence            3567889999999999999999999999988999999999999753

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.02  E-value=2.6e-05  Score=49.78  Aligned_cols=48  Identities=17%  Similarity=0.290  Sum_probs=43.1

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      +.+.++.++.++..+...|...+.++++|++ +|+++|+|+.+|+.+..
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~   50 (109)
T cd04583           2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY   50 (109)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh
Confidence            4577889999999999999999999999998 58999999999998765

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.02  E-value=2.9e-05  Score=50.13  Aligned_cols=47  Identities=15%  Similarity=0.202  Sum_probs=43.2

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhh
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI   74 (105)
                      .|..+.+++++.++...|...+.++++|++.|+++|+|+.+|+.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~   48 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAV   48 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHH
Confidence            46788999999999999999999999999889999999999998876

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.01  E-value=2e-05  Score=51.18  Aligned_cols=47  Identities=23%  Similarity=0.242  Sum_probs=42.7

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      .+..+.+++++.++..+|...+++.++|++ +|+++|+||.+|+.++.
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC
Confidence            467889999999999999999999999997 69999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.01  E-value=1.9e-05  Score=54.40  Aligned_cols=49  Identities=16%  Similarity=0.186  Sum_probs=44.8

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhc
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~   75 (105)
                      +.++++.+++++..+...+...+...++|++.|+++|+||.+|+.+++.
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~~~~~   49 (143)
T cd04634           1 KNPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLV   49 (143)
T ss_pred             CCcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHHHHHH
Confidence            3578999999999999999999999999998899999999999988764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.01  E-value=2.8e-05  Score=49.75  Aligned_cols=47  Identities=19%  Similarity=0.141  Sum_probs=42.3

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhc
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~   75 (105)
                      ..++.+++++.+|..+|...+.+.++|++.|+++|++|.+||.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~~   49 (111)
T cd04611           3 ILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILRLLA   49 (111)
T ss_pred             ceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHHh
Confidence            34678999999999999999999999999999999999999988763

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.01  E-value=2.2e-05  Score=51.52  Aligned_cols=47  Identities=19%  Similarity=0.268  Sum_probs=42.6

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      +.++.+++|+.++...|...+.++++|++ +|+++|+||.+|+.++..
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~   50 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMG   50 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHh
Confidence            56789999999999999999999999986 899999999999988663

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.00  E-value=2e-05  Score=52.16  Aligned_cols=47  Identities=17%  Similarity=0.268  Sum_probs=42.0

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEeeC--CeEEEEEehHHHHHhhc
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVTAI--GRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~--GrLVGvVT~kDL~kaI~   75 (105)
                      ++++.+++++.+|...|...+.+++||++.  |+++|+||.+|+.+++.
T Consensus         3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~   51 (123)
T cd04627           3 FIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLW   51 (123)
T ss_pred             ceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHH
Confidence            567888999999999999999999999984  89999999999988764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.00  E-value=2.3e-05  Score=51.31  Aligned_cols=46  Identities=13%  Similarity=0.188  Sum_probs=41.8

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRND   73 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~ka   73 (105)
                      .|.++.+++++.++...|...+.++++|++ +|+++|+||.+|+.++
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~   48 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEI   48 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhh
Confidence            377889999999999999999999999997 6899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.98  E-value=3.3e-05  Score=49.47  Aligned_cols=48  Identities=13%  Similarity=0.241  Sum_probs=42.8

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      .++.+.+++++.++...|...+..+++|++ +|+++|+||.+|+.+++.
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~   50 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVA   50 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHh
Confidence            356788999999999999999999999997 599999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.98  E-value=2.5e-05  Score=50.05  Aligned_cols=47  Identities=28%  Similarity=0.341  Sum_probs=42.5

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      +.++.+++++.++..+|...+.++++|++ +|+++|+||.+||.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~   50 (114)
T cd04613           3 VVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILF   50 (114)
T ss_pred             ceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHh
Confidence            56789999999999999999999999998 489999999999988764

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.97  E-value=2.8e-05  Score=50.23  Aligned_cols=48  Identities=15%  Similarity=0.227  Sum_probs=43.1

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN   72 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k   72 (105)
                      +...+.++.+++++.++...|...+..+++|++ +|+++|+||..||.+
T Consensus        64 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          64 MNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             ccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence            456788899999999999999999999999997 589999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.97  E-value=2.8e-05  Score=50.54  Aligned_cols=48  Identities=19%  Similarity=0.344  Sum_probs=42.4

Q ss_pred             CceEEeccCCHHHHHHHHHHhC-CcEEEEeeCCeEEEEEehHHHHHhhc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVG-VNHAYVTAIGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lg-lr~l~Vt~~GrLVGvVT~kDL~kaI~   75 (105)
                      .|.++.+++++..+...|...+ .+.++|++.|+++|+||.+|+.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~   50 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTA   50 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHHHHh
Confidence            3678899999999999998888 77888989999999999999998664

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.97  E-value=4.2e-05  Score=49.22  Aligned_cols=47  Identities=26%  Similarity=0.377  Sum_probs=42.5

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhh
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI   74 (105)
                      .+.++..++++.++..+|...+.+.++|++.|+++|+|+.+|+.+.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~   48 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRV   48 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHH
Confidence            46788899999999999999999999999999999999999998743

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.97  E-value=3.6e-05  Score=50.18  Aligned_cols=47  Identities=11%  Similarity=0.179  Sum_probs=42.4

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-C-CeEEEEEehHHHHHhh
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-I-GRLVGVVGLKEVRNDS   74 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~-GrLVGvVT~kDL~kaI   74 (105)
                      .+..+.+++++.++...|...+.++++|++ + |+++|+||.+|+++++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~   50 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKV   50 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHH
Confidence            467889999999999999999999999987 4 8999999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.97  E-value=2.8e-05  Score=51.08  Aligned_cols=49  Identities=16%  Similarity=0.215  Sum_probs=43.8

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEeeC--CeEEEEEehHHHHHhhcc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAI--GRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~--GrLVGvVT~kDL~kaI~~   76 (105)
                      .+..+.+++++.++..+|...+...++|++.  |+++|+|+.+||.+++..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~   52 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGG   52 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhc
Confidence            4678899999999999999999999999975  899999999999987753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.96  E-value=2.9e-05  Score=49.59  Aligned_cols=51  Identities=18%  Similarity=0.148  Sum_probs=44.8

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN   72 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k   72 (105)
                      ..+ +.+.+..+.+++++..+..+|...+...++|++ +|+++|+||++++.+
T Consensus        54 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          54 GDH-AEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             hhh-cccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            344 566678899999999999999999999999997 589999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=97.96  E-value=3.5e-05  Score=50.03  Aligned_cols=49  Identities=18%  Similarity=0.196  Sum_probs=44.0

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      -.|+++.+++++..+...|...+.++++|++ +|+++|+||.+|+.+++.
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~   51 (113)
T cd04607           2 IKQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALL   51 (113)
T ss_pred             CcceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHh
Confidence            3588999999999999999999999999986 699999999999988664

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.96  E-value=2.8e-05  Score=49.58  Aligned_cols=46  Identities=13%  Similarity=0.226  Sum_probs=38.6

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEe-eCCeEEEEEehHHHHH
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVT-AIGRLVGVVGLKEVRN   72 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt-~~GrLVGvVT~kDL~k   72 (105)
                      ++..++.+.+++++..+..+|.. .- .++|+ ++|+++|+||++|+.+
T Consensus        63 ~~~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          63 MGEPLPTVDPDAPIEELSELLDR-GN-VAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             hcCCCceeCCCCcHHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhhc
Confidence            56778899999999999999998 43 45555 5799999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=97.95  E-value=5.7e-05  Score=48.75  Aligned_cols=45  Identities=16%  Similarity=0.254  Sum_probs=41.0

Q ss_pred             eEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhh
Q psy6637          30 FQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        30 ~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI   74 (105)
                      ..+.+++|+.++..+|...+...++|+++|+++|+|+.+|+.++.
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~   48 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIENAT   48 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHhhhc
Confidence            467889999999999999999999999889999999999998754

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.94  E-value=2.4e-05  Score=52.19  Aligned_cols=48  Identities=10%  Similarity=0.185  Sum_probs=43.6

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      .++.+.+++|+.++...|...+...++|++ .|+++|+||.+|++++..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~   50 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLL   50 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhc
Confidence            467899999999999999999999999996 699999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.94  E-value=2.6e-05  Score=53.66  Aligned_cols=48  Identities=23%  Similarity=0.259  Sum_probs=43.5

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHhhc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~kaI~   75 (105)
                      .++++.+++++..|...|...+.+.++|++. |+++|+||.+||.+++.
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~   50 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEF   50 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhh
Confidence            3678899999999999999999999999985 99999999999998774

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.93  E-value=3e-05  Score=50.49  Aligned_cols=53  Identities=23%  Similarity=0.356  Sum_probs=44.0

Q ss_pred             cCCccccCCCceEEeccCCHHHHHHHHHHhCCcEE----EEeeCCeEEEEEehHHHHH
Q psy6637          19 SFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHA----YVTAIGRLVGVVGLKEVRN   72 (105)
Q Consensus        19 dl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l----~Vt~~GrLVGvVT~kDL~k   72 (105)
                      ....+ +++.+.++.+++++..+..+|...+.+++    .|.++|+++|+||.+|+.+
T Consensus        62 ~v~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          62 PVSEV-MDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             cHHHh-cCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            34556 78889999999999999999998886433    4556899999999999864

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.93  E-value=3.7e-05  Score=51.36  Aligned_cols=45  Identities=18%  Similarity=0.245  Sum_probs=41.3

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN   72 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k   72 (105)
                      .|.++.+++++.++...|...+.++++|++ +|+++|+|+.+|+.+
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~   47 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLG   47 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhh
Confidence            377899999999999999999999999997 699999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.93  E-value=3e-05  Score=50.74  Aligned_cols=48  Identities=21%  Similarity=0.303  Sum_probs=43.4

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHhhc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~kaI~   75 (105)
                      .+.++.+++++..+..+|..-+.+.++|+++ |+++|+||.+||.++..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~   50 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAAL   50 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhc
Confidence            4678899999999999999999999999885 99999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.93  E-value=3e-05  Score=50.00  Aligned_cols=48  Identities=15%  Similarity=0.170  Sum_probs=42.6

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      .++.+.+++++.++...|...+.+.++|++ .|+++|+|+.+|+.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~   50 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLL   50 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhh
Confidence            467889999999999999988999999987 699999999999988653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.92  E-value=4.9e-05  Score=48.94  Aligned_cols=45  Identities=16%  Similarity=0.183  Sum_probs=41.5

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHH
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVR   71 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~   71 (105)
                      +.+.++.+++++.+|...|...+.+.++|+++|+++|+||.+|+.
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~   45 (113)
T cd04622           1 RDVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIV   45 (113)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHH
Confidence            356789999999999999999999999999889999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.92  E-value=3.2e-05  Score=50.01  Aligned_cols=47  Identities=9%  Similarity=0.188  Sum_probs=40.4

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRND   73 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~ka   73 (105)
                      +.+.+.++.+++++.+|..+|...+  .++|++ +|+++|+||++|+.++
T Consensus        69 ~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~~  116 (116)
T cd04643          69 MNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILKA  116 (116)
T ss_pred             hcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhcC
Confidence            6677899999999999999998755  577876 6999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.90  E-value=3.3e-05  Score=49.71  Aligned_cols=47  Identities=15%  Similarity=0.054  Sum_probs=42.2

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHhhc
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~kaI~   75 (105)
                      +.++.+++++.++..+|...+.++++|++. |+++|+|+.+++.+++.
T Consensus         3 ~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~   50 (111)
T cd04639           3 FETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALA   50 (111)
T ss_pred             ceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHH
Confidence            567889999999999999899999999985 99999999999988754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.90  E-value=6.9e-05  Score=48.28  Aligned_cols=47  Identities=11%  Similarity=0.191  Sum_probs=42.9

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhh
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI   74 (105)
                      .++++.+++++.++...|..-+.+.++|++.|+++|+||.+|+.+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~   48 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKV   48 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHH
Confidence            46778999999999999999999999999989999999999998865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=97.90  E-value=4.2e-05  Score=49.72  Aligned_cols=47  Identities=19%  Similarity=0.212  Sum_probs=40.4

Q ss_pred             ceEEeccCCHHHHHHHHHHhC-CcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          29 PFQLVERTSLLKVHSIFSLVG-VNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lg-lr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      ..++.+++++.+|...|..-+ .++++|++ +|+++|+||.+||.++..
T Consensus         3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~   51 (114)
T cd04801           3 FPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT   51 (114)
T ss_pred             cceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH
Confidence            356789999999999987665 89999997 599999999999988764

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=97.89  E-value=6.4e-05  Score=48.44  Aligned_cols=48  Identities=15%  Similarity=0.232  Sum_probs=43.1

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~   75 (105)
                      .+..+..+.++.+|...|...+.++++|++.|+++|+|+.+|+.+.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~~~~   50 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVEKALR   50 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHHHHh
Confidence            457888999999999999988999999998899999999999988763

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.89  E-value=2.7e-05  Score=52.06  Aligned_cols=39  Identities=21%  Similarity=0.329  Sum_probs=36.1

Q ss_pred             ccCCHHHHHHHHHHhCCcEEEEeeC--CeEEEEEehHHHHH
Q psy6637          34 ERTSLLKVHSIFSLVGVNHAYVTAI--GRLVGVVGLKEVRN   72 (105)
Q Consensus        34 ~~tsL~kv~~LF~~Lglr~l~Vt~~--GrLVGvVT~kDL~k   72 (105)
                      +++++.++...|...+.++++|++.  |+++|+||+.|+.+
T Consensus        85 ~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          85 ENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             ccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            6899999999999999999999984  79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.89  E-value=5.2e-05  Score=50.39  Aligned_cols=46  Identities=20%  Similarity=0.258  Sum_probs=41.8

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      +.++.+++++..+..+|...+.+.++|++ +|+++|+||.+|+.+++
T Consensus         3 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~   49 (128)
T cd04632           3 VITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFV   49 (128)
T ss_pred             ceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHH
Confidence            46788999999999999999999999997 59999999999998765

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.89  E-value=3.6e-05  Score=50.32  Aligned_cols=46  Identities=17%  Similarity=0.320  Sum_probs=42.0

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRND   73 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~ka   73 (105)
                      .++++.+++++..+...|...+.++++|++ .|+++|+|+.+||+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~   48 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRA   48 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhh
Confidence            467899999999999999999999999997 5999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.89  E-value=1.1e-05  Score=54.54  Aligned_cols=55  Identities=11%  Similarity=0.035  Sum_probs=44.3

Q ss_pred             cCCccccCCCceEEeccCCHHHHHHHHHHh---------CCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          19 SFEQCHIDPAPFQLVERTSLLKVHSIFSLV---------GVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        19 dl~~~~id~sP~qv~~~tsL~kv~~LF~~L---------glr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      ....+ ++..+.++.+++++..+..++..+         +.++++|.+ +|+++||||.+|+.+++
T Consensus        60 ~v~~i-m~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~  124 (124)
T cd04608          60 PVSKA-LYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             cHHHH-hhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence            44556 678889999999999999865332         577888876 59999999999998864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=97.89  E-value=5.1e-05  Score=64.52  Aligned_cols=67  Identities=24%  Similarity=0.334  Sum_probs=54.7

Q ss_pred             CChHHHHhHHHHHhcCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC----CeEEEEEehHHHHH
Q psy6637           1 MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI----GRLVGVVGLKEVRN   72 (105)
Q Consensus         1 ~~~~e~~~we~~~l~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~----GrLVGvVT~kDL~k   72 (105)
                      |++|++.+    +....-.++.. +-..|+++.+++++.++..+|...+++.++|++.    |+|+|+||.+|++.
T Consensus        83 ~~~e~~~~----~v~kvk~~e~g-~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~  153 (495)
T PTZ00314         83 CSIEEQVE----EVRKVKRFENG-FIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDF  153 (495)
T ss_pred             CCHHHHHH----HHhhccccccc-cccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhh
Confidence            45555433    45555556666 4588999999999999999999999999999986    79999999999964

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=97.87  E-value=3.9e-05  Score=51.69  Aligned_cols=48  Identities=19%  Similarity=0.201  Sum_probs=42.8

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      .++++.+++++..+..+|...+.++++|++ .|+++|+||.+||.++..
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~   51 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAE   51 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhc
Confidence            467889999999999999999999999997 589999999999987653

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=97.87  E-value=3.8e-05  Score=63.92  Aligned_cols=55  Identities=18%  Similarity=0.242  Sum_probs=50.2

Q ss_pred             ccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          22 QCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        22 ~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      .+ +.+.++++.+++++.+|..+|+..++..+||++ +|+++|+||.+|+.+++...
T Consensus       199 ~i-m~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~  254 (449)
T TIGR00400       199 SI-MRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE  254 (449)
T ss_pred             HH-hCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh
Confidence            44 677889999999999999999999999999997 79999999999999988765

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=97.86  E-value=2.8e-05  Score=61.72  Aligned_cols=50  Identities=14%  Similarity=0.131  Sum_probs=46.5

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      .|+.+.+++++.++...|+.-+.+.++|++ +|.++|+||+.|+.++|.+.
T Consensus       141 ~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGe  191 (292)
T PRK15094        141 QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGE  191 (292)
T ss_pred             CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCC
Confidence            466899999999999999999999999998 79999999999999999775

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.86  E-value=4.9e-05  Score=49.47  Aligned_cols=47  Identities=23%  Similarity=0.369  Sum_probs=42.2

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHhh
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRNDS   74 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~kaI   74 (105)
                      .+.++.+++++..+...|...+.++++|+++ |+++|+|+.+||.+..
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~   49 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDAS   49 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHh
Confidence            4678889999999999999999999999975 9999999999998754

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>COG0517 FOG: CBS domain [General function prediction only]

Probab=97.85  E-value=7.1e-05  Score=48.31  Aligned_cols=46  Identities=15%  Similarity=0.224  Sum_probs=41.8

Q ss_pred             cCCCceEEeccCCHHHHHHHHHH-hCCcEEEEeeCC--eEEEEEehHHH
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSL-VGVNHAYVTAIG--RLVGVVGLKEV   70 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~-Lglr~l~Vt~~G--rLVGvVT~kDL   70 (105)
                      +...++++.+++++..+..++.. .++++++|++.+  +|+|+||.+|+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di  116 (117)
T COG0517          68 MTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI  116 (117)
T ss_pred             ccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence            44578899999999999999999 599999999965  99999999986

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.85  E-value=8.1e-05  Score=46.40  Aligned_cols=49  Identities=16%  Similarity=0.194  Sum_probs=43.6

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHhhcc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~kaI~~   76 (105)
                      .++.+..++++..+..+|...+.++++|++. |+++|+|+.+|+.+....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~   51 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAE   51 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHh
Confidence            4677889999999999999999999999985 899999999999887754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=97.84  E-value=7.8e-05  Score=47.96  Aligned_cols=48  Identities=17%  Similarity=0.158  Sum_probs=43.0

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEee-C-CeEEEEEehHHHHHhhcc
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA-I-GRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~-GrLVGvVT~kDL~kaI~~   76 (105)
                      .+++.+++++.++..+|...+..+++|++ . |+++|+||.+||.++...
T Consensus         3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~   52 (111)
T cd04590           3 IVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAE   52 (111)
T ss_pred             eEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHc
Confidence            56789999999999999999999999987 4 899999999999988753

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=97.84  E-value=8.1e-05  Score=62.24  Aligned_cols=64  Identities=20%  Similarity=0.320  Sum_probs=56.3

Q ss_pred             HHHHhcCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC----CeEEEEEehHHHHHhh
Q psy6637          10 EEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI----GRLVGVVGLKEVRNDS   74 (105)
Q Consensus        10 e~~~l~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~----GrLVGvVT~kDL~kaI   74 (105)
                      +.+++.+...++.. +.+.|+++.+++++.++..+|...+++.+||+++    |+++|+||.+||..+.
T Consensus        72 q~~~V~~Vk~~~~~-~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~  139 (450)
T TIGR01302        72 QAEQVKRVKRAENG-IISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK  139 (450)
T ss_pred             HHHHHhhhccccCc-eecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh
Confidence            34567788888888 6689999999999999999999999999999986    4999999999997643

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.83  E-value=7.9e-05  Score=48.07  Aligned_cols=47  Identities=21%  Similarity=0.209  Sum_probs=42.4

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      .|+.+.+++|+..+...|...+.++++|++ .|+++|+||.+|+.++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~   49 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYA   49 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhh
Confidence            378899999999999999999999999987 58999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.83  E-value=6.9e-05  Score=48.98  Aligned_cols=46  Identities=24%  Similarity=0.268  Sum_probs=41.3

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEeeC----CeEEEEEehHHHHHh
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAI----GRLVGVVGLKEVRND   73 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~----GrLVGvVT~kDL~ka   73 (105)
                      .|.++.+++++.++..+|...+...++|++.    |+++|+|+.+|+..+
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~   52 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL   52 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhh
Confidence            5678899999999999999999999999984    899999999998753

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=97.82  E-value=4.8e-05  Score=64.62  Aligned_cols=55  Identities=15%  Similarity=-0.014  Sum_probs=48.8

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC---CeEEEEEehHHHHHhhc
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI---GRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~---GrLVGvVT~kDL~kaI~   75 (105)
                      ...+ +++.+.++.+++++.+|..+|...+.++++|+++   |+++|+||++|+.+++.
T Consensus       514 v~di-m~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        514 AADY-AHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             HHHh-ccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence            3445 6788899999999999999999999999999974   58999999999999873

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.80  E-value=0.00011  Score=47.40  Aligned_cols=47  Identities=19%  Similarity=0.207  Sum_probs=41.8

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      .+.++.+++++.++...|...+.+.++|++ .|+++|+|+.+++..+.
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~   50 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD   50 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc
Confidence            357889999999999999999999999997 69999999999998653

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.80  E-value=6.4e-05  Score=63.87  Aligned_cols=56  Identities=20%  Similarity=0.194  Sum_probs=49.9

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      +.+ +.+.+.++.+++++.+|..+|...++++++|++ +|+|+|+||++||.++....
T Consensus       151 ~di-Mt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~  207 (479)
T PRK07807        151 RDV-MSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT  207 (479)
T ss_pred             HHh-ccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence            344 667899999999999999999999999999998 79999999999999876544

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=97.79  E-value=3.7e-05  Score=64.73  Aligned_cols=61  Identities=13%  Similarity=0.150  Sum_probs=53.1

Q ss_pred             hcCcccCCccccC-CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          14 MGQKVSFEQCHID-PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        14 l~~~idl~~~~id-~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      +.+.+..+.+ |+ ..|.++.+++++.++..+|...++++++|++ +|+++|+||++||.+...
T Consensus       242 l~~~~~V~~i-M~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~  304 (546)
T PRK14869        242 INQSIPVSYI-MTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVR  304 (546)
T ss_pred             hhcCCCHHHh-ccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcccc
Confidence            4455556666 77 7899999999999999999999999999998 799999999999987554

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.79  E-value=9.1e-05  Score=48.20  Aligned_cols=47  Identities=17%  Similarity=0.084  Sum_probs=41.1

Q ss_pred             ceEEeccCCHHHHHHHHHHhC-CcEEEEeeCCeEEEEEehHHHHHhhc
Q psy6637          29 PFQLVERTSLLKVHSIFSLVG-VNHAYVTAIGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lg-lr~l~Vt~~GrLVGvVT~kDL~kaI~   75 (105)
                      +.++.+++++..+...|...+ .+.++|++.|+++|+|+.+|+.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~~~~   50 (119)
T cd04598           3 APTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALMELLS   50 (119)
T ss_pred             cCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHHHHh
Confidence            346789999999999998887 88999997799999999999987654

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.78  E-value=6.3e-05  Score=50.49  Aligned_cols=49  Identities=18%  Similarity=0.182  Sum_probs=43.9

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      .+..+.+++++..+..+|...+.++++|++ +|+++|+|+.+|+.+++..
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~   51 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYK   51 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhc
Confidence            367889999999999999999999999997 5999999999999987753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=97.75  E-value=6.7e-05  Score=62.00  Aligned_cols=58  Identities=17%  Similarity=0.222  Sum_probs=50.4

Q ss_pred             ccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          18 VSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        18 idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      .++..+ + ..|+.|.+++++..+...|+.-+.+.++|++ +|.++|+||..|+.+.+.+.
T Consensus       255 ~~l~~~-~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivge  313 (408)
T TIGR03520       255 FDWQSL-L-REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGD  313 (408)
T ss_pred             CCHHHH-c-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCC
Confidence            344444 4 3589999999999999999999999999998 69999999999999999654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=97.75  E-value=8.1e-05  Score=58.52  Aligned_cols=51  Identities=8%  Similarity=0.034  Sum_probs=45.0

Q ss_pred             cCC--CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          25 IDP--APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        25 id~--sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      +.+  .|.++.+++|+.+|..+|...+.+.++|++ +|+++|+||.+|+++++.
T Consensus       208 m~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~  261 (326)
T PRK10892        208 MHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFD  261 (326)
T ss_pred             hCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHh
Confidence            555  789999999999999999999988888876 899999999999988764

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=97.75  E-value=5.6e-05  Score=66.15  Aligned_cols=53  Identities=13%  Similarity=0.157  Sum_probs=49.2

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccC
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~   77 (105)
                      +-..|++|..++.+..|..+|.+.+++|++|+++|+.+||||..|++++...+
T Consensus       220 mT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~gq~~Gilt~~dIl~l~s~~  272 (610)
T COG2905         220 MTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTEDGQPLGILTLTDILRLFSQN  272 (610)
T ss_pred             hccCceeecCcchHHHHHHHHHHhCCceeeeecCCeeeEEeeHHHHHHhhCCC
Confidence            44678999999999999999999999999999999999999999999988754

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=97.74  E-value=8.6e-05  Score=62.57  Aligned_cols=56  Identities=20%  Similarity=0.207  Sum_probs=49.8

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      ..+ +.+.|.++.+++++.+|..+|...++++++|++ +|+++|+||.+|+.+++...
T Consensus        71 ~di-m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~  127 (546)
T PRK14869         71 RDL-EIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDI  127 (546)
T ss_pred             HHh-cCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhh
Confidence            344 567899999999999999999999999999998 69999999999999877653

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=97.73  E-value=9.6e-05  Score=62.77  Aligned_cols=53  Identities=11%  Similarity=0.082  Sum_probs=48.4

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      +.+.++++.+++++.+|..+|...++++++|++ +|+|+|+||++||.++....
T Consensus       152 Mt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~  205 (475)
T TIGR01303       152 MSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT  205 (475)
T ss_pred             ccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence            567799999999999999999999999999998 79999999999999876544

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.71  E-value=8.5e-05  Score=63.45  Aligned_cols=47  Identities=21%  Similarity=0.109  Sum_probs=44.2

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      .++++.+++++.+|..+|...++++++|++ +|+|+|+||++|+.+..
T Consensus       172 ~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        172 KLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             CeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence            678999999999999999999999999998 69999999999998864

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=97.70  E-value=0.0001  Score=57.57  Aligned_cols=54  Identities=15%  Similarity=0.068  Sum_probs=47.6

Q ss_pred             CccccCCC--ceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          21 EQCHIDPA--PFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        21 ~~~~id~s--P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      +.+ +++.  +.++.+++|+.+|..+|...+..+++|++ +|+++|+||.+|+.+++.
T Consensus       200 ~~i-m~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~  256 (321)
T PRK11543        200 HHL-MRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLV  256 (321)
T ss_pred             HHH-hccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHh
Confidence            334 6777  89999999999999999999999999997 799999999999988763

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=97.70  E-value=0.00018  Score=45.80  Aligned_cols=47  Identities=15%  Similarity=0.254  Sum_probs=41.7

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND   73 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka   73 (105)
                      +.++++..++++.++...|...+...++|++.|+++|+++.+||.+.
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~~   48 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK   48 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhcc
Confidence            45677899999999999999888888999988999999999999764

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.68  E-value=0.00018  Score=46.37  Aligned_cols=47  Identities=17%  Similarity=0.104  Sum_probs=41.7

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      +.++.+++++..+...|...+.+.++|++ .|+++|+|+.+|+.++..
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~   50 (111)
T cd04626           3 FPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDL   50 (111)
T ss_pred             ceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHh
Confidence            56788999999999999999999999987 599999999999987653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=97.64  E-value=0.0003  Score=60.12  Aligned_cols=68  Identities=15%  Similarity=0.134  Sum_probs=53.8

Q ss_pred             CChHHHHhHHHHHhcCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC----CeEEEEEehHHHHHh
Q psy6637           1 MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI----GRLVGVVGLKEVRND   73 (105)
Q Consensus         1 ~~~~e~~~we~~~l~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~----GrLVGvVT~kDL~ka   73 (105)
                      +++|++...-..-+    .++.- +-+.|+++.+++++.++..+|...++..++|+++    |+|+|+||.+|+...
T Consensus        87 as~E~q~~~Irkvk----~~~~g-mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v  158 (505)
T PLN02274         87 NTAEEQAAIVRKAK----SRRVG-FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFV  158 (505)
T ss_pred             CCHHHHHHHHHHhh----ccccc-ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhc
Confidence            35566555444444    34444 4488999999999999999999999999999986    799999999999653

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=97.60  E-value=0.00014  Score=55.56  Aligned_cols=68  Identities=13%  Similarity=0.195  Sum_probs=56.7

Q ss_pred             CcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccCchhhhcc
Q psy6637          16 QKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLSSVVIRSI   84 (105)
Q Consensus        16 ~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~~~~~~~~   84 (105)
                      ..+--..+ +....|.++++.++.+|..+|+..|+.+++|.+.|++||-||-.++.++.-..-+.++++
T Consensus        63 ~~ita~~i-M~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e~i~~~  130 (187)
T COG3620          63 TRITAKTI-MHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGMESIRSL  130 (187)
T ss_pred             ceEeHhhh-ccCCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccccchhhh
Confidence            45555556 778889999999999999999999999999999999999999999998885443333433

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=97.60  E-value=0.00018  Score=61.11  Aligned_cols=55  Identities=16%  Similarity=0.146  Sum_probs=48.6

Q ss_pred             cccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHH
Q psy6637          17 KVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRN   72 (105)
Q Consensus        17 ~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~k   72 (105)
                      .+.-... +...|+++.+++++.++..+|...+.++++|++.|+++|+||.+||..
T Consensus        87 ~VKv~ei-m~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~  141 (475)
T TIGR01303        87 FVKSRDL-VLDTPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLG  141 (475)
T ss_pred             hcchhhc-cccCCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhc
Confidence            4444455 668899999999999999999999999999999999999999999854

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=97.59  E-value=0.00014  Score=59.46  Aligned_cols=56  Identities=20%  Similarity=0.300  Sum_probs=48.8

Q ss_pred             cCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          19 SFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        19 dl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      ..+.+ +.+.+.++.+++++.++..+|...++++++|++ +|+++|+||.+|+++++.
T Consensus       336 ~v~~i-m~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~  392 (454)
T TIGR01137       336 TVKDL-HLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALF  392 (454)
T ss_pred             CHHHh-CcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence            34445 678899999999999999999999999999997 589999999999998664

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=97.56  E-value=0.00025  Score=59.75  Aligned_cols=62  Identities=23%  Similarity=0.366  Sum_probs=52.8

Q ss_pred             HHHhcCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637          11 EEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRND   73 (105)
Q Consensus        11 ~~~l~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~ka   73 (105)
                      .+++...-.++.. +...|+++.+++++.++..+|...++..++|++ .|+++|+||.+||...
T Consensus        80 ~~~I~~vk~~~di-m~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~  142 (486)
T PRK05567         80 AEEVRKVKRSESG-VVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFE  142 (486)
T ss_pred             HHHHHHhhhhhhc-ccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhc
Confidence            3445555566666 668899999999999999999999999999998 7999999999999754

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.54  E-value=0.00025  Score=45.24  Aligned_cols=48  Identities=19%  Similarity=0.378  Sum_probs=41.8

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      +.|..+..++++..+...|...+...++|++ .|+++|+||.+++.++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~   50 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET   50 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc
Confidence            3577889999999999999999999999987 58999999999987543

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=97.53  E-value=0.0002  Score=59.88  Aligned_cols=52  Identities=15%  Similarity=0.268  Sum_probs=47.3

Q ss_pred             cC-CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          25 ID-PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        25 id-~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      +. ..++++.+++++.++..+|...+.++++|++ +|+++|+||++|+.++++.
T Consensus       149 m~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~  202 (450)
T TIGR01302       149 MTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKF  202 (450)
T ss_pred             hCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccC
Confidence            44 3789999999999999999999999999998 7999999999999998753

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=97.50  E-value=0.0003  Score=45.17  Aligned_cols=47  Identities=26%  Similarity=0.200  Sum_probs=41.0

Q ss_pred             eEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          30 FQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        30 ~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      .++.+++++..+...|...+.++++|++ .|+++|+|+.+++++.+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~   52 (114)
T cd04604           5 PLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEK   52 (114)
T ss_pred             cccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhc
Confidence            3578899999999999888889999987 5899999999999987753

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=97.49  E-value=0.00025  Score=53.72  Aligned_cols=51  Identities=20%  Similarity=0.115  Sum_probs=45.7

Q ss_pred             cCCC-ceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          25 IDPA-PFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        25 id~s-P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      +.+. +.++.+++++.++...|...+.++++|++ +|+++|+||.+|+.+++.
T Consensus       161 m~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~  213 (268)
T TIGR00393       161 MQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALL  213 (268)
T ss_pred             hCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHh
Confidence            5566 88899999999999999999999999998 799999999999988764

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.48  E-value=0.00035  Score=59.42  Aligned_cols=56  Identities=18%  Similarity=0.160  Sum_probs=48.9

Q ss_pred             CcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637          16 QKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN   72 (105)
Q Consensus        16 ~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k   72 (105)
                      ..+..... +.+.|+++.+++++.++..+|...+++.++|++ +|+++|+||.+||..
T Consensus        87 ~~VKv~~i-Mi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~  143 (479)
T PRK07807         87 AWVKSRDL-VFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAG  143 (479)
T ss_pred             hhcccccc-cccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhc
Confidence            34444566 678999999999999999999999999999996 789999999999864

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=97.46  E-value=0.00032  Score=46.02  Aligned_cols=46  Identities=22%  Similarity=0.151  Sum_probs=40.9

Q ss_pred             eEEeccCCHHHHHHHHHHhCCcEEEEeeC----CeEEEEEehHHHHHhhc
Q psy6637          30 FQLVERTSLLKVHSIFSLVGVNHAYVTAI----GRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        30 ~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~----GrLVGvVT~kDL~kaI~   75 (105)
                      ..+.+++++.++..++...+.+.++|++.    |+++|+|+.+|+.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~   54 (105)
T cd04591           5 VLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALK   54 (105)
T ss_pred             EEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHH
Confidence            46789999999999999999989999876    89999999999988664

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=97.46  E-value=0.00037  Score=59.59  Aligned_cols=48  Identities=13%  Similarity=0.078  Sum_probs=45.1

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      +.++.+++++.+|..+|...+..+++|++ .|+|+|+||++|+.+++..
T Consensus       175 lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        175 LVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             cEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            67999999999999999999999999997 7999999999999998854

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=97.43  E-value=0.00033  Score=59.06  Aligned_cols=57  Identities=18%  Similarity=0.319  Sum_probs=52.0

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      ++.+ |..+|+++.+.||+..|.++|---|+.-+||++ +.+|+||||+.|+++++--.
T Consensus       251 ieKV-Mtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~  308 (432)
T COG4109         251 IEKV-MTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMI  308 (432)
T ss_pred             HHHH-hccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHh
Confidence            4445 788999999999999999999999999999998 89999999999999988655

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=97.39  E-value=0.00033  Score=53.56  Aligned_cols=44  Identities=14%  Similarity=0.161  Sum_probs=38.8

Q ss_pred             EEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhcc
Q psy6637          31 QLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        31 qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~   76 (105)
                      ||++++|+.-++.|+...  .-++|+++|++|||||+.|+.|.+.+
T Consensus       142 ~Vs~~~~l~vI~~LL~~~--~AVlV~e~G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         142 TVSPDESLNVISQLLEEH--PAVLVVENGKVVGIITKADIMKLLAG  185 (187)
T ss_pred             cCCCCCCHHHHHHHHhhC--CeEEEEeCCceEEEEeHHHHHHHHhc
Confidence            789999999999997654  57889999999999999999998754

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=97.36  E-value=0.00032  Score=59.64  Aligned_cols=56  Identities=27%  Similarity=0.396  Sum_probs=48.6

Q ss_pred             ccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          18 VSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        18 idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      +..+.+ +++.+.++.+++++.++.+.+...+.+++||++ +|+++|+||.+|+.+++
T Consensus       447 ~~V~di-m~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l  503 (574)
T PRK01862        447 TQMREL-IQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDL  503 (574)
T ss_pred             CcHHHH-hcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHh
Confidence            334445 677888999999999999999999999999998 68999999999998865

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=97.35  E-value=0.0004  Score=57.59  Aligned_cols=51  Identities=16%  Similarity=0.206  Sum_probs=48.4

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      |.+...|+.++|+......+|..-|+++++|.+ .|++|||||-.|+..|+-
T Consensus       321 mt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~  372 (382)
T COG3448         321 MTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALY  372 (382)
T ss_pred             ccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHH
Confidence            788889999999999999999999999999998 899999999999998874

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=97.35  E-value=0.00024  Score=58.90  Aligned_cols=53  Identities=17%  Similarity=0.205  Sum_probs=48.8

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      |-+..++++.+||+..++.++...+++-++|++ +.||||+||.+||.+....+
T Consensus       251 MSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~  304 (382)
T COG3448         251 MSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPS  304 (382)
T ss_pred             cCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcc
Confidence            778899999999999999999999999999998 78999999999998865544

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.33  E-value=0.00045  Score=59.10  Aligned_cols=46  Identities=24%  Similarity=0.315  Sum_probs=42.1

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEeeC----CeEEEEEehHHHHHh
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAI----GRLVGVVGLKEVRND   73 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~----GrLVGvVT~kDL~ka   73 (105)
                      .|.++.+++|+.+|..+|...+++.++|+++    |+|+||||.+||+++
T Consensus       106 ~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~  155 (502)
T PRK07107        106 SDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS  155 (502)
T ss_pred             CCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc
Confidence            4579999999999999999999999999985    899999999999754

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=97.32  E-value=0.00061  Score=57.45  Aligned_cols=50  Identities=18%  Similarity=0.280  Sum_probs=46.1

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      ..++++.+++++.++..+|...++++++|++ +|+++|+||.+||.+++..
T Consensus       156 ~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~  206 (486)
T PRK05567        156 ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEF  206 (486)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhC
Confidence            5678999999999999999999999999997 8999999999999988743

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=97.28  E-value=0.00076  Score=55.17  Aligned_cols=48  Identities=21%  Similarity=0.189  Sum_probs=42.2

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhh
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI   74 (105)
                      +.+.+..+.+++++..+..+|...+  ..+|+++|+++||||+.||.+++
T Consensus       406 m~~~~~~v~~~~~l~~a~~~~~~~~--~~vV~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       406 MSKKFIQIGEGEKLSDLSKFLEKNS--SAIVTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             cCCCCeEECCcCcHHHHHHHHHHCC--eeEEEECCEEEEEEEHHHHHHhh
Confidence            6677889999999999999998754  47788899999999999999886

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=97.22  E-value=0.0007  Score=57.66  Aligned_cols=48  Identities=13%  Similarity=0.113  Sum_probs=44.6

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      .++++.+++++.+|..+|...+++.++|++ +|+++|+||++|+.++..
T Consensus       170 ~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~  218 (495)
T PTZ00314        170 KLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG  218 (495)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence            678899999999999999999999999997 799999999999998764

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=97.22  E-value=0.00067  Score=43.78  Aligned_cols=42  Identities=24%  Similarity=0.309  Sum_probs=35.9

Q ss_pred             EeccCCHHHHHHHHHHhC-----CcEEEEee-CCeEEEEEehHHHHHh
Q psy6637          32 LVERTSLLKVHSIFSLVG-----VNHAYVTA-IGRLVGVVGLKEVRND   73 (105)
Q Consensus        32 v~~~tsL~kv~~LF~~Lg-----lr~l~Vt~-~GrLVGvVT~kDL~ka   73 (105)
                      +.+++|+..+..+|...+     .++++|++ .|+++|+||.+++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~   49 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA   49 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC
Confidence            567899999999998777     57888887 6899999999998764

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.19  E-value=0.0016  Score=41.62  Aligned_cols=45  Identities=18%  Similarity=0.180  Sum_probs=38.8

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRND   73 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~ka   73 (105)
                      .+.+..++++.++...|...+...++|++ +|+++|+|+.+++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~   48 (106)
T cd04638           3 VVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN   48 (106)
T ss_pred             cEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhc
Confidence            35677888999999999888989999987 4999999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=97.16  E-value=0.002  Score=53.78  Aligned_cols=50  Identities=18%  Similarity=0.198  Sum_probs=43.2

Q ss_pred             cCCCceEEeccCCHHHHHHHHHH-----hCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSL-----VGVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~-----Lglr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      +.+..+++.+++|+.++...|+.     .+...+||++ .|+++|+|+.+|+..+-
T Consensus       137 Mt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~  192 (449)
T TIGR00400       137 MTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAK  192 (449)
T ss_pred             CcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCC
Confidence            66778999999999999999986     5677899886 79999999999997653

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=97.11  E-value=0.0013  Score=54.61  Aligned_cols=50  Identities=22%  Similarity=0.248  Sum_probs=48.1

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      .|+.|.+.+++.++...|+.-+.+-+.|++ +|-..|+||..|+.+.|.+.
T Consensus       280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGe  330 (429)
T COG1253         280 PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGE  330 (429)
T ss_pred             CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCC
Confidence            789999999999999999999999999998 89999999999999999886

>PRK11573 hypothetical protein; Provisional

Probab=97.10  E-value=0.0014  Score=54.53  Aligned_cols=50  Identities=16%  Similarity=0.158  Sum_probs=47.1

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      .|+.|++++++.++...|+.-+.+-+.|++ +|..+|+||..|+.+.|-+.
T Consensus       263 ~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGe  313 (413)
T PRK11573        263 EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGD  313 (413)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCC
Confidence            588999999999999999999999999998 79999999999999998766

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=96.99  E-value=0.004  Score=49.49  Aligned_cols=63  Identities=10%  Similarity=0.069  Sum_probs=50.5

Q ss_pred             HHhcCcccCCccc----cCC--CceEEeccCCHHHHHHHHHHhCCcEEEEeeC--CeEEEEEehHHHHHhh
Q psy6637          12 EEMGQKVSFEQCH----IDP--APFQLVERTSLLKVHSIFSLVGVNHAYVTAI--GRLVGVVGLKEVRNDS   74 (105)
Q Consensus        12 ~~l~~~idl~~~~----id~--sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~--GrLVGvVT~kDL~kaI   74 (105)
                      +.+...++|+...    |-|  ..+.+..++|+.++..+|...+.+++||++.  ++++|+|+.|||+++.
T Consensus        56 ~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~  126 (292)
T PRK15094         56 DMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFM  126 (292)
T ss_pred             HHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHh
Confidence            3444555665533    334  4689999999999999999999999999974  6899999999998765

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=96.96  E-value=0.0021  Score=52.78  Aligned_cols=52  Identities=19%  Similarity=0.104  Sum_probs=46.2

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      +++...++.++++|..+..++...+.. ++|++ +|+++|+||+.++.+++...
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~  360 (363)
T TIGR01186       308 LIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS  360 (363)
T ss_pred             hccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence            566677899999999999999999988 88877 89999999999999998543

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=96.94  E-value=0.0012  Score=58.03  Aligned_cols=51  Identities=20%  Similarity=0.230  Sum_probs=46.1

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      +...|+++++.+|+..|..-+...|...+.|.+ .|.+.||||++||+.++-
T Consensus       155 ~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~  206 (610)
T COG2905         155 KTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVI  206 (610)
T ss_pred             hcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHH
Confidence            668899999999999999999999999666665 899999999999988874

>KOG1764|consensus

Probab=96.91  E-value=0.0023  Score=53.07  Aligned_cols=49  Identities=22%  Similarity=0.265  Sum_probs=45.6

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHhhccC
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~kaI~~~   77 (105)
                      .++..++.||.++...+...+.++++|++. |+|+||||..|+..++-..
T Consensus       312 vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~  361 (381)
T KOG1764|consen  312 VVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT  361 (381)
T ss_pred             cEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence            489999999999999999999999999995 9999999999999988554

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=96.89  E-value=0.0018  Score=49.07  Aligned_cols=44  Identities=14%  Similarity=0.194  Sum_probs=39.3

Q ss_pred             ccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEe
Q psy6637          22 QCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVG   66 (105)
Q Consensus        22 ~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT   66 (105)
                      .+ +.+.+..+.+++++.+|..+|...++++++|++ .|+++|+|+
T Consensus       224 ~i-m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       224 DF-MTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             Hh-CCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence            44 566788999999999999999999999999997 589999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=96.69  E-value=0.003  Score=53.78  Aligned_cols=53  Identities=11%  Similarity=0.208  Sum_probs=48.8

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      +++.|+.|.+++..+.|..+|+..++-.++|++ +|+|+|+||..|+...++.-
T Consensus       202 m~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eE  255 (451)
T COG2239         202 MEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEE  255 (451)
T ss_pred             hcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHH
Confidence            566699999999999999999999999999998 78999999999998888655

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=96.45  E-value=0.0074  Score=50.20  Aligned_cols=57  Identities=14%  Similarity=0.137  Sum_probs=47.5

Q ss_pred             cCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          19 SFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        19 dl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      .+... +++...++.++++|..+...+...... ++|++ .|+++|+||+.+|.+++...
T Consensus       338 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        338 GLDAA-LIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE  395 (400)
T ss_pred             chhhh-hccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            34455 567788999999999999999886655 88877 89999999999999998543

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=96.27  E-value=0.013  Score=48.47  Aligned_cols=64  Identities=20%  Similarity=0.202  Sum_probs=51.2

Q ss_pred             HHhcCcccCCccccC----C--CceEEeccCCHHHHHHHHHHhCCcEEEEeeC--CeEEEEEehHHHHHhhc
Q psy6637          12 EEMGQKVSFEQCHID----P--APFQLVERTSLLKVHSIFSLVGVNHAYVTAI--GRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        12 ~~l~~~idl~~~~id----~--sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~--GrLVGvVT~kDL~kaI~   75 (105)
                      +-+..-++|+...+.    |  .++.+..++++.++..++...|.+++||.+.  ++++|||+.|||..++.
T Consensus       180 ~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~  251 (408)
T TIGR03520       180 KILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN  251 (408)
T ss_pred             HHHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc
Confidence            344456666653322    2  4699999999999999999999999999985  48999999999987654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=95.99  E-value=0.018  Score=48.91  Aligned_cols=76  Identities=17%  Similarity=0.068  Sum_probs=57.8

Q ss_pred             cCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccCchhhhcccccCCcCCc
Q psy6637          15 GQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLSSVVIRSITMADGLGEG   93 (105)
Q Consensus        15 ~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~~~~~~~~~~~~~~~e~   93 (105)
                      .++.|+... . .-|+=|.+.|+|..-..-|+.-+-|.+.|++ +|.+.|+||..|+.+-|-+--..    .|+..-.|.
T Consensus       265 ~~k~d~~~~-a-~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftd----e~d~~~~ev  338 (423)
T COG4536         265 FTKEDILRA-A-DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTD----EHDTLAKEV  338 (423)
T ss_pred             ccHhHHHHH-h-cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhccccc----cCcccchhh
Confidence            344444433 2 5689999999999999999999999999998 99999999999999988544111    244455565


Q ss_pred             chh
Q psy6637          94 QWN   96 (105)
Q Consensus        94 ~~~   96 (105)
                      .|+
T Consensus       339 ~~q  341 (423)
T COG4536         339 IPQ  341 (423)
T ss_pred             ccc
Confidence            553

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=95.81  E-value=0.034  Score=47.43  Aligned_cols=53  Identities=19%  Similarity=0.226  Sum_probs=44.9

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhC-----CcEEEEee-CCeEEEEEehHHHHH
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVG-----VNHAYVTA-IGRLVGVVGLKEVRN   72 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lg-----lr~l~Vt~-~GrLVGvVT~kDL~k   72 (105)
                      .-+-.|+.--+++.+++|+.+|....+..+     .+++||++ .++|+|+||.++|..
T Consensus       133 taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~  191 (451)
T COG2239         133 TAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLT  191 (451)
T ss_pred             hhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhc
Confidence            334447888899999999999999999665     48899998 788999999999863

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=95.72  E-value=0.023  Score=47.11  Aligned_cols=50  Identities=22%  Similarity=0.292  Sum_probs=41.9

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~   75 (105)
                      +.....++.++|+|..+..++...+.- +.|++.|+++|+|++.++++++.
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       331 LEAAPTVINPDTLMRDVLAARHRTGGA-ILLVENGRIVGVIGDDNIYHALL  380 (382)
T ss_pred             hcccCcccCCCCcHHHHHHHHhcCCCC-eEEeeCCeEEEEEeHHHHHHHHh
Confidence            344566889999999999998888754 66667799999999999999884

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG2550|consensus

Probab=94.87  E-value=0.017  Score=49.76  Aligned_cols=47  Identities=19%  Similarity=0.232  Sum_probs=42.8

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEee----CCeEEEEEehHHHHHh
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA----IGRLVGVVGLKEVRND   73 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~----~GrLVGvVT~kDL~ka   73 (105)
                      ..|+.++|++++-.|..++...|+..++||+    .+||||+||.+|+.-.
T Consensus       116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~  166 (503)
T KOG2550|consen  116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL  166 (503)
T ss_pred             cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh
Confidence            4588899999999999999999999999997    5889999999998654

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=93.39  E-value=0.16  Score=42.87  Aligned_cols=53  Identities=17%  Similarity=0.134  Sum_probs=47.4

Q ss_pred             ccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhcc
Q psy6637          24 HIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        24 ~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~   76 (105)
                      .+++.+.++..++++.......+.-+.-.+.|-++||++|+|++.++..|+..
T Consensus       332 ~~~~~~~~v~~d~~~~~~~~~~~~~~~p~aVvde~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         332 ALIDDVLTVDADTPLSEILARIRQAPCPVAVVDEDGRYVGIISRGELLEALAR  384 (386)
T ss_pred             cccccccccCccchHHHHHHHHhcCCCceeEEcCCCcEEEEecHHHHHHHHhc
Confidence            35667789999999999999999999888888889999999999999999854

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=91.78  E-value=0.22  Score=34.55  Aligned_cols=32  Identities=16%  Similarity=0.137  Sum_probs=29.4

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEeeC
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI   58 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~   58 (105)
                      ..++++.+++++.+|..+|...++++++|++.
T Consensus        86 ~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~  117 (133)
T cd04592          86 CGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR  117 (133)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence            45789999999999999999999999999973

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>KOG1764|consensus

Probab=91.56  E-value=0.32  Score=40.43  Aligned_cols=50  Identities=18%  Similarity=0.117  Sum_probs=45.1

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      .-..+..++++..|..+|..-++.-++|++ .|++||++++.|+...+...
T Consensus       238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~  288 (381)
T KOG1764|consen  238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREG  288 (381)
T ss_pred             hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcC
Confidence            356788999999999999999999999998 89999999999998877665

>PRK11573 hypothetical protein; Provisional

Probab=90.33  E-value=1  Score=37.58  Aligned_cols=64  Identities=5%  Similarity=0.021  Sum_probs=50.1

Q ss_pred             HHHhcCcccCCccccC------CCceEEeccCCHHHHHHHHHHhCCcEEEEeeC--CeEEEEEehHHHHHhh
Q psy6637          11 EEEMGQKVSFEQCHID------PAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI--GRLVGVVGLKEVRNDS   74 (105)
Q Consensus        11 ~~~l~~~idl~~~~id------~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~--GrLVGvVT~kDL~kaI   74 (105)
                      .+-+..-++|+...+.      .--+.+..++++.++..++...|..++||.++  ..++|+|..||+.++.
T Consensus       175 ~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~  246 (413)
T PRK11573        175 QDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLM  246 (413)
T ss_pred             HHHHHHHhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHh
Confidence            3344566777654332      12377888999999999999999999999874  6899999999998765

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=88.18  E-value=0.78  Score=39.17  Aligned_cols=48  Identities=19%  Similarity=0.204  Sum_probs=42.7

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      ..+..+.+++++.+-+.+-...|-.+-||.+ .-++|||||-||+..+-
T Consensus       198 ~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~  246 (432)
T COG4109         198 EDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKK  246 (432)
T ss_pred             ccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCC
Confidence            4467789999999999999999999999998 78999999999986654

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=86.84  E-value=2.3  Score=35.34  Aligned_cols=67  Identities=10%  Similarity=0.154  Sum_probs=52.1

Q ss_pred             HHHhcCcccCCccccC------CCceEEeccCCHHHHHHHHHHhCCcEEEEee--CCeEEEEEehHHHHHhhccC
Q psy6637          11 EEEMGQKVSFEQCHID------PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA--IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        11 ~~~l~~~idl~~~~id------~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~--~GrLVGvVT~kDL~kaI~~~   77 (105)
                      .+-+...++|+..++.      .--+.++.+.++.++...+...+..+.+|.+  ...++|+|..|||..+....
T Consensus       194 ~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~  268 (429)
T COG1253         194 REMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDG  268 (429)
T ss_pred             HHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence            3444566666664332      1236677789999999999999999999998  67899999999999988655

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=86.68  E-value=1.9  Score=35.94  Aligned_cols=44  Identities=11%  Similarity=0.126  Sum_probs=37.9

Q ss_pred             eccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          33 VERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        33 ~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      .+..+...+...+...+...++|++ .|+++|+|+.+++.++...
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  335 (400)
T PRK10070        291 TPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQ  335 (400)
T ss_pred             CCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhc
Confidence            3556888899999999999999997 7999999999999876543

>KOG2550|consensus

Probab=86.66  E-value=1.2  Score=38.64  Aligned_cols=50  Identities=14%  Similarity=0.238  Sum_probs=43.9

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      +-+.|++.....+|.++-.+++...--.++|++ +|.||-+|++.||.|.-
T Consensus       177 mt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~  227 (503)
T KOG2550|consen  177 MTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR  227 (503)
T ss_pred             cccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence            445668888899999999999999999888887 89999999999999843

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=85.67  E-value=3  Score=34.33  Aligned_cols=50  Identities=18%  Similarity=0.292  Sum_probs=41.6

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      ..+....++.+...+...+...+...++|++ .++++|+|+.+++.++...
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  300 (363)
T TIGR01186       250 TGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKK  300 (363)
T ss_pred             ccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhc
Confidence            3445566677899999999999999999997 7999999999999876643

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	105
2d4z_A	250	Crystal Structure Of The Cytoplasmic Domain Of The		4e-17

>pdb|2D4Z|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Chloride Channel Clc-0 Length = 250

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 54/71 (76%)
Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           ++ E+  +WE+ E    V+FE C ID +PFQLVE TSL K H++FSL+G++ AYVT++G+
Sbjct: 171 LTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGK 230
Query: 61  LVGVVGLKEVR 71
           LVGVV L E++
Sbjct: 231 LVGVVALAEIQ 241

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	105
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	1e-26
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	9e-16
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	1e-12
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	1e-05

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 Length = 250

 Score = 97.9 bits (242), Expect = 1e-26
 Identities = 37/71 (52%), Positives = 54/71 (76%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           ++ E+  +WE+ E    V+FE C ID +PFQLVE TSL K H++FSL+G++ AYVT++G+
Sbjct: 171 LTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGK 230

Query: 61  LVGVVGLKEVR 71
           LVGVV L E++
Sbjct: 231 LVGVVALAEIQ 241

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632

 Score = 70.2 bits (172), Expect = 9e-16
 Identities = 15/70 (21%), Positives = 31/70 (44%)

Query: 3   PEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLV 62
               K      + +  S      D +P  +   + + ++H +F ++  +  YVT  G+LV
Sbjct: 552 EHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTERGKLV 611

Query: 63  GVVGLKEVRN 72
           G+V  ++V  
Sbjct: 612 GIVEREDVAY 621

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 59.3 bits (143), Expect = 1e-12
 Identities = 16/63 (25%), Positives = 30/63 (47%)

Query: 9   WEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLK 68
              ++  Q +    C  +P    L   T+L +  ++F L+ +   +VT+ GR VG V   
Sbjct: 80  PGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVGCVSWV 139

Query: 69  EVR 71
           E++
Sbjct: 140 EMK 142

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           +   +            +      +D +PF + + T +  V  IF  +G+    VT  GR
Sbjct: 91  IYFTEHSPPLPPYTPPTLKLRNI-LDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGR 149

Query: 61  LVGVVGLKEV 70
           L+G++  K+V
Sbjct: 150 LLGIITKKDV 159

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	105
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.91
4esy_A	170	CBS domain containing membrane protein; structural	99.1
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.09
3fio_A	70	A cystathionine beta-synthase domain protein fused	99.01
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.92
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.91
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.91
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.88
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.87
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.87
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.85
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.85
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.84
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.84
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.84
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.83
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.82
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.81
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.81
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.81
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	98.8
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.8
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.79
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.79
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.78
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.77
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.77
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.76
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.75
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.75
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.75
4esy_A	170	CBS domain containing membrane protein; structural	98.72
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	98.72
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.72
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.7
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.69
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.68
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.67
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.66
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.64
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.63
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.62
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.61
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.61
3ddj_A	296	CBS domain-containing protein; structural genomics	98.61
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.6
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.6
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.59
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.59
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.59
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.58
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.58
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.58
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	98.58
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.58
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.57
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	98.56
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	98.56
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.54
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.54
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.54
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.51
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.5
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.5
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.5
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.49
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.49
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	98.49
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.49
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.49
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.48
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.48
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.48
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.47
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.47
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.47
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.47
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.47
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.46
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.46
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	98.45
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.45
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.44
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.44
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.44
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	98.43
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.41
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.39
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	98.38
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.38
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.38
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.34
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.34
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.29
3ddj_A	296	CBS domain-containing protein; structural genomics	98.29
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.28
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	98.27
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.27
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	98.23
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.21
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.16
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	98.15
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	98.15
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	98.14
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	98.12
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.02
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	97.94
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	97.9
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	97.85
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	97.85
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	97.81
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	97.79
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	97.74
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	97.71
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	97.7
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.66
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	97.61
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.61
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.58
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.55
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	97.46
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	97.44
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.39
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	97.29
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.16
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	97.15

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.91  E-value=5.8e-25  Score=168.47  Aligned_cols=77  Identities=49%  Similarity=0.843  Sum_probs=73.6

Q ss_pred             CChHHHHhHHHHHhcCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccC
Q psy6637           1 MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus         1 ~~~~e~~~we~~~l~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~   77 (105)
                      |+++|+++|+++++.+++||+.|.||++||||+++|||++||.||+++|++|+|||+.||||||||+|||++||++.
T Consensus       171 i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~GrLVGIVTrkDl~kai~~~  247 (250)
T 2d4z_A          171 LTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQAAIEGS  247 (250)
T ss_dssp             CBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHC-
T ss_pred             cChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEECCEEEEEEEHHHHHHHHHHH
Confidence            57899999999999999999998899999999999999999999999999999999999999999999999999754

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.10  E-value=1.1e-10  Score=81.29  Aligned_cols=56  Identities=14%  Similarity=0.133  Sum_probs=51.2

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccC
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~   77 (105)
                      +.+ +.+.|+++.+++++.+|..+|...|+++++|+++|+|+||||++||.+++...
T Consensus       108 ~~i-m~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGivt~~Dil~~l~~~  163 (170)
T 4esy_A          108 SAV-MTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQDGVPVGIVTRRDLLKLLLLE  163 (170)
T ss_dssp             HHH-CBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHTTTSCCC
T ss_pred             hhh-cccCcccCCcchhHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHHHHHHhc
Confidence            334 67889999999999999999999999999999999999999999999998544

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.09  E-value=2.7e-10  Score=71.81  Aligned_cols=46  Identities=17%  Similarity=0.235  Sum_probs=43.8

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhh
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI   74 (105)
                      ++++.+++|+.+|..+|...++++++|+++|+|+||||.+|+.+++
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~~~lvGIvT~~Di~~~~   47 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEGDEILGVVTERDILDKV   47 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHH
Confidence            6899999999999999999999999999999999999999997655

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.92  E-value=2.4e-09  Score=72.45  Aligned_cols=52  Identities=27%  Similarity=0.502  Sum_probs=47.8

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhcc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~   76 (105)
                      +++.|+++.+++++.+|..+|...++++++|+++|+++||||++||.+++..
T Consensus        96 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~l~Giit~~dil~~~~~  147 (164)
T 2pfi_A           96 TEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVGCVSWVEMKKAISN  147 (164)
T ss_dssp             CBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHHHHH
T ss_pred             ccCCceEECCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEHHHHHHHHHh
Confidence            3344899999999999999999999999999999999999999999998854

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.91  E-value=2.9e-09  Score=69.12  Aligned_cols=56  Identities=9%  Similarity=0.112  Sum_probs=50.3

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhcc
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~   76 (105)
                      ...+ +.+.|+++.+++++.+|..+|...++++++|++.|+++|+||++|+.+++..
T Consensus        67 v~~~-m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           67 VWEV-MERDLVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAKMA  122 (125)
T ss_dssp             HHHH-CBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHC-
T ss_pred             HHHH-cCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEECCEEEEEEEHHHHHHHHHh
Confidence            3445 6678999999999999999999999999999999999999999999998854

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.91  E-value=3.6e-09  Score=73.08  Aligned_cols=60  Identities=27%  Similarity=0.459  Sum_probs=53.8

Q ss_pred             cccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccC
Q psy6637          17 KVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        17 ~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~   77 (105)
                      ......+ +++.|+++.+++++..|..+|...++++++|+++|+++||||++||.+++...
T Consensus       107 ~~~v~~i-m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~g~~vGiit~~dll~~l~~~  166 (185)
T 2j9l_A          107 TLKLRNI-LDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVLKHIAQM  166 (185)
T ss_dssp             CEECGGG-EESSCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHHH
T ss_pred             CccHHHh-hCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEECCEEEEEEEHHHHHHHHHHh
Confidence            3455666 77889999999999999999999999999999999999999999999988544

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.88  E-value=1.1e-08  Score=66.29  Aligned_cols=57  Identities=16%  Similarity=0.107  Sum_probs=51.2

Q ss_pred             cCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHhhcc
Q psy6637          19 SFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        19 dl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~kaI~~   76 (105)
                      ....+ +.+.|+++.+++++.+|..+|...++++++|++. |+++|+||.+|+.+++..
T Consensus        63 ~v~~~-~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           63 TIEEI-MTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             BGGGT-SBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred             CHHHH-hcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence            45566 6788999999999999999999999999999996 999999999999998854

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.87  E-value=5.2e-09  Score=68.93  Aligned_cols=52  Identities=15%  Similarity=0.169  Sum_probs=48.5

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhcc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~   76 (105)
                      +.+.|+++.+++++.+|..+|...++++++|+++|+++|+||++|+.+++.+
T Consensus        80 m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~g~~~Giit~~dil~~l~~  131 (133)
T 1y5h_A           80 ARDSIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARHLPE  131 (133)
T ss_dssp             HTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHTCC-
T ss_pred             hcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHh
Confidence            6688999999999999999999999999999999999999999999998753

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.87  E-value=5.5e-09  Score=69.05  Aligned_cols=51  Identities=14%  Similarity=0.146  Sum_probs=45.7

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      +.+ |+++.+++++.+|..+|...++++++|++ +|+++|+||++|+.+++.+
T Consensus        75 m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~g  126 (127)
T 3nqr_A           75 LRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG  126 (127)
T ss_dssp             CBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC--
T ss_pred             cCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence            434 88999999999999999999999999997 7999999999999998843

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.85  E-value=5.7e-09  Score=70.05  Aligned_cols=56  Identities=18%  Similarity=0.180  Sum_probs=48.8

Q ss_pred             cCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          19 SFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        19 dl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      ..+.+ +.+ |+++.+++++..|..+|...++++++|++ +|+++||||++|+.+++.+
T Consensus        71 ~v~~~-m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~  127 (136)
T 3lfr_A           71 DVKKL-LRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVG  127 (136)
T ss_dssp             CGGGT-CBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC--
T ss_pred             CHHHH-cCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence            34555 555 99999999999999999999999999997 7999999999999999855

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.85  E-value=3.7e-09  Score=69.62  Aligned_cols=58  Identities=12%  Similarity=0.269  Sum_probs=51.3

Q ss_pred             cCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          19 SFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        19 dl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      ....+ +.+.|+++.+++++..|..+|...++++++|++ +|+++|+||.+|+.+++...
T Consensus        68 ~v~~~-~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~  126 (133)
T 2ef7_A           68 KAEEF-MTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM  126 (133)
T ss_dssp             BGGGT-SEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             CHHHH-cCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHH
Confidence            34455 567899999999999999999999999999998 89999999999999988544

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.84  E-value=9.7e-09  Score=69.27  Aligned_cols=58  Identities=17%  Similarity=0.197  Sum_probs=51.1

Q ss_pred             cccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          17 KVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        17 ~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      ......+ + ..|+++.+++++.+|..+|...++++++|++ +|+++|+||+.|+.+++.+
T Consensus        87 ~~~v~~~-m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A           87 KIELEEI-L-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             CCCGGGT-C-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHH
T ss_pred             CccHHHh-c-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence            3445566 5 7789999999999999999999999999998 5999999999999998843

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.84  E-value=1.1e-08  Score=70.46  Aligned_cols=59  Identities=15%  Similarity=0.169  Sum_probs=52.9

Q ss_pred             ccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccC
Q psy6637          18 VSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        18 idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~   77 (105)
                      .....+ +.+.|+++.+++++..|..+|...++++++|++.|+++|+||++||.+++...
T Consensus        93 ~~v~~~-m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~~Giit~~dil~~~~~~  151 (165)
T 3fhm_A           93 QSVSVA-MTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGRLAGIISIGDVVKARIGE  151 (165)
T ss_dssp             SBGGGT-SBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHTTCC
T ss_pred             CCHHHH-hcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHHH
Confidence            344556 66889999999999999999999999999999999999999999999998655

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.84  E-value=5.2e-09  Score=69.57  Aligned_cols=56  Identities=23%  Similarity=0.287  Sum_probs=50.1

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      ..+ +.+.|+++.+++++.+|..+|...++++++|++ +|+++||||++|+.+++...
T Consensus        88 ~~~-m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~  144 (152)
T 4gqw_A           88 GDL-MTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQI  144 (152)
T ss_dssp             HHH-SEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC-
T ss_pred             HHh-cCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            344 567789999999999999999999999999998 89999999999999998654

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.83  E-value=7.6e-09  Score=68.46  Aligned_cols=56  Identities=11%  Similarity=0.170  Sum_probs=51.0

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhcc
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~   76 (105)
                      ...+ +.+.|+++.+++++..|..+|...++++++|+++|+++|+||.+|+.+++..
T Consensus        76 v~~~-m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A           76 VKEI-MTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             GGGT-SBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHC
T ss_pred             HHHh-ccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEeCCEEEEEEEHHHHHHHHHh
Confidence            4445 6688999999999999999999999999999999999999999999998854

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.82  E-value=8.9e-09  Score=68.78  Aligned_cols=50  Identities=16%  Similarity=0.150  Sum_probs=46.4

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      ..|+++.+++++.+|..+|...++++++|++ +|+++||||++|+.+++.+
T Consensus        77 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g  127 (130)
T 3hf7_A           77 DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVG  127 (130)
T ss_dssp             BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC
T ss_pred             cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhC
Confidence            4588999999999999999999999999996 7999999999999999854

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.81  E-value=8.1e-09  Score=71.02  Aligned_cols=57  Identities=11%  Similarity=0.027  Sum_probs=51.2

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccC
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~   77 (105)
                      ...+ +.+.|+++.+++++..|..+|...++++++|+++|+++||||++||.+++...
T Consensus        80 v~~i-m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGiit~~dil~~~~~~  136 (160)
T 2o16_A           80 LFEV-MHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAINL  136 (160)
T ss_dssp             HHHH-SCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred             HHHH-hcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEECCEEEEEEEHHHHHHHHHHH
Confidence            3445 66889999999999999999999999999999999999999999999987543

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.81  E-value=5.4e-09  Score=71.68  Aligned_cols=57  Identities=16%  Similarity=0.241  Sum_probs=51.5

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      ...+ +.+.|+++.+++++.+|..+|...++++++|++ +|+++||||++||.+++...
T Consensus       100 v~~~-m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~  157 (180)
T 3sl7_A          100 VGDL-MTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQI  157 (180)
T ss_dssp             HHHH-SEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             HHHH-hCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHH
Confidence            3445 678899999999999999999999999999998 89999999999999998654

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.81  E-value=8.5e-09  Score=68.45  Aligned_cols=56  Identities=18%  Similarity=0.180  Sum_probs=48.5

Q ss_pred             cCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          19 SFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        19 dl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      ..+.+ +.+ |+++.+++++.+|..+|...++++++|++ +|+++|+||++|+.+++.+
T Consensus        70 ~v~~~-m~~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A           70 DIRSL-VRP-AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             CGGGG-CBC-CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHH
T ss_pred             CHHHH-hCC-CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence            34455 444 89999999999999999999999999998 4999999999999998843

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=98.80  E-value=7.7e-09  Score=75.52  Aligned_cols=58  Identities=9%  Similarity=0.041  Sum_probs=52.1

Q ss_pred             ccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHhhcc
Q psy6637          18 VSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        18 idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~kaI~~   76 (105)
                      ...+.+ +.+.|+++.+++++.+|..+|...++++++|+++ |+++|+||++|+.+++..
T Consensus       221 ~~v~~i-m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~~~  279 (282)
T 2yzq_A          221 KPVAEI-MTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLVK  279 (282)
T ss_dssp             CBGGGT-CBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGGCC
T ss_pred             CCHHHh-cCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHHHHHHHHh
Confidence            344556 7789999999999999999999999999999996 699999999999998854

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.80  E-value=1.5e-08  Score=69.01  Aligned_cols=58  Identities=17%  Similarity=0.134  Sum_probs=51.1

Q ss_pred             ccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          18 VSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        18 idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      .....+ + +.|+++.+++++..|..+|...++++++|++ +|+++||||++|+.+++.+.
T Consensus        86 ~~v~~~-m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~  144 (153)
T 3oco_A           86 AKISTI-M-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGN  144 (153)
T ss_dssp             SBGGGT-C-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC-
T ss_pred             CcHHHH-h-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhcc
Confidence            344556 5 7899999999999999999999999999998 59999999999999998653

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.79  E-value=1.2e-08  Score=69.29  Aligned_cols=56  Identities=13%  Similarity=0.168  Sum_probs=51.1

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccC
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~   77 (105)
                      +.+ +.+.|+++.+++++.+|..+|...++++++|+++|+++|+||++|+.+++...
T Consensus        81 ~~~-m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~dil~~l~~~  136 (157)
T 4fry_A           81 EEI-MTAKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGDLVKSVIAD  136 (157)
T ss_dssp             HHH-SBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHTT
T ss_pred             HHH-cCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHHH
Confidence            344 56789999999999999999999999999999999999999999999998655

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.79  E-value=1.3e-08  Score=71.01  Aligned_cols=59  Identities=15%  Similarity=0.214  Sum_probs=52.0

Q ss_pred             cccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          17 KVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        17 ~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      ......+ + +.|+++.+++++.+|..+|...++++++|++ +|+++||||++|+.+++.+.
T Consensus       106 ~~~v~~i-m-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~  165 (172)
T 3lhh_A          106 RLELVDL-V-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGE  165 (172)
T ss_dssp             CCCGGGG-C-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTT
T ss_pred             cccHHHH-h-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCC
Confidence            3445666 5 7899999999999999999999999999998 59999999999999998543

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.78  E-value=1.6e-08  Score=67.07  Aligned_cols=49  Identities=20%  Similarity=0.215  Sum_probs=45.7

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      .|+++.+++++.+|..+|...++++++|++ +|+++|+||+.|+.+++.+
T Consensus        80 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~g  129 (130)
T 3i8n_A           80 PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLVG  129 (130)
T ss_dssp             ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred             CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHcC
Confidence            488999999999999999999999999997 6999999999999998853

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.77  E-value=1.6e-08  Score=67.54  Aligned_cols=58  Identities=14%  Similarity=0.140  Sum_probs=51.0

Q ss_pred             ccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          18 VSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        18 idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      .....+ +.+.|+++.++ ++.+|..+|...++++++|++ +|+++|+||++||.+++...
T Consensus        71 ~~v~~~-m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~  129 (141)
T 2rih_A           71 GPAMPI-ANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAIL  129 (141)
T ss_dssp             SBSGGG-CBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHHH
T ss_pred             CCHHHH-cCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHHHH
Confidence            344555 67889999999 999999999999999999998 89999999999999887553

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.77  E-value=3.3e-09  Score=70.02  Aligned_cols=55  Identities=13%  Similarity=0.009  Sum_probs=50.5

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      ...+ +.+.++++.+++++.+|..+|...++++++|++ +|+++|+||++|+.+++.
T Consensus        70 v~~~-m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~  125 (128)
T 3gby_A           70 LGEE-LLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLA  125 (128)
T ss_dssp             CCGG-GCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             HHHH-ccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHH
Confidence            5566 678889999999999999999999999999996 899999999999999884

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.76  E-value=2.2e-08  Score=66.02  Aligned_cols=59  Identities=17%  Similarity=0.072  Sum_probs=52.6

Q ss_pred             ccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccC
Q psy6637          18 VSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        18 idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~   77 (105)
                      +-.+.+ +.+.+.++.+++++.+|..+|...++++++|++.|+++|+||.+|+.+++...
T Consensus         5 ~~v~~~-m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~   63 (128)
T 3gby_A            5 VTFSYL-AETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLEGRKGW   63 (128)
T ss_dssp             CBGGGG-CBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHTTCSSS
T ss_pred             eEHHHh-hcCCcceECCCCCHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHHHhhC
Confidence            344556 77889999999999999999999999999999999999999999999987644

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.75  E-value=2.9e-08  Score=65.66  Aligned_cols=57  Identities=18%  Similarity=0.227  Sum_probs=50.7

Q ss_pred             cCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          19 SFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        19 dl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      ....+ +.+.|+++.+++++.+|..+|...+++++ |++ +|+++|+||.+|+.+++...
T Consensus        73 ~v~~~-m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~  130 (138)
T 2yzi_A           73 PVERI-MTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRR  130 (138)
T ss_dssp             BGGGT-CBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCC
T ss_pred             CHHHH-hhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHH
Confidence            34455 67889999999999999999999999999 988 99999999999999998543

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.75  E-value=1.3e-08  Score=68.71  Aligned_cols=54  Identities=20%  Similarity=0.259  Sum_probs=48.3

Q ss_pred             CccccCC--CceEEeccCCHHHHHHHHHHhCCcEEEEeeC--CeEEEEEehHHHHHhhc
Q psy6637          21 EQCHIDP--APFQLVERTSLLKVHSIFSLVGVNHAYVTAI--GRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        21 ~~~~id~--sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~--GrLVGvVT~kDL~kaI~   75 (105)
                      ..+ +.+  .++++.+++|+.+|..+|...++++++|++.  |+++|+||.+||.+++.
T Consensus        26 ~di-M~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~   83 (148)
T 3lv9_A           26 REI-MVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKI   83 (148)
T ss_dssp             GGT-SEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHH
T ss_pred             HHc-cccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHh
Confidence            344 555  7899999999999999999999999999986  89999999999998864

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.75  E-value=1.4e-08  Score=69.25  Aligned_cols=54  Identities=15%  Similarity=0.095  Sum_probs=49.2

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      ..+ +.+ |+++.+++++.+|..+|...++++++|++ +|+++|+||++||.+++..
T Consensus        99 ~~i-m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~  153 (157)
T 1o50_A           99 SEI-MLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWK  153 (157)
T ss_dssp             HHH-CBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             HHH-cCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence            335 677 99999999999999999999999999998 8999999999999998843

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=98.72  E-value=3.5e-08  Score=68.41  Aligned_cols=59  Identities=19%  Similarity=0.161  Sum_probs=52.5

Q ss_pred             ccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          18 VSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        18 idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      +..+.+ |.+.++++.+++|+.+|..+|...++++++|++ +|+|+|+||.+|+.+++...
T Consensus        18 ~~V~di-M~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~   77 (170)
T 4esy_A           18 VPIRDI-LTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPF   77 (170)
T ss_dssp             SBGGGG-CCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCT
T ss_pred             CCHHHh-cCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhc
Confidence            445666 778899999999999999999999999999996 89999999999998877544

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=98.72  E-value=1.6e-08  Score=73.85  Aligned_cols=77  Identities=16%  Similarity=0.116  Sum_probs=51.9

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC--chh--hhcccccCCcCCcc
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS--SVV--IRSITMADGLGEGQ   94 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~--~~~--~~~~~~~~~~~e~~   94 (105)
                      ...+ +++.|+++.+++++..|..+|...++++++|++ +|+|+|+||..|+.+++...  ++.  ..++.....+..+.
T Consensus       118 v~~i-m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e~~ed~~~~~g~~~~~~~~~~~  196 (205)
T 3kxr_A          118 LISL-LSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREHYEAQLMATAGMDESDDLFAPI  196 (205)
T ss_dssp             GGGG-CCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHHHC-------------------
T ss_pred             HHHH-hcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHHHHHHHHHhcCCCcccccCCCH
Confidence            4556 778899999999999999999999999999998 79999999999999998755  111  12333334455566


Q ss_pred             hhh
Q psy6637          95 WNA   97 (105)
Q Consensus        95 ~~~   97 (105)
                      |..
T Consensus       197 ~~~  199 (205)
T 3kxr_A          197 LKG  199 (205)
T ss_dssp             ---
T ss_pred             HHH
Confidence            654

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.72  E-value=4.9e-08  Score=63.20  Aligned_cols=52  Identities=17%  Similarity=0.026  Sum_probs=48.1

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhcc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~   76 (105)
                      +.+.++++.+++|+.+|..+|...+.++++|+++|+++|+||.+|+.+++..
T Consensus         7 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~G~it~~dl~~~~~~   58 (125)
T 1pbj_A            7 MVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAE   58 (125)
T ss_dssp             CBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHH
T ss_pred             cCCCceEECCCCcHHHHHHHHHHcCCCEEEEEeCCeeEEEEeHHHHHHHHhc
Confidence            5678899999999999999999999999999999999999999999987643

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.70  E-value=1.9e-08  Score=68.06  Aligned_cols=49  Identities=12%  Similarity=0.191  Sum_probs=45.8

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND   73 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka   73 (105)
                      +.+.|+++.+++++.+|..+|...++++++|++.|+++|+||++|+.+|
T Consensus       101 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~Giit~~dil~a  149 (149)
T 3k2v_A          101 MTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGDHLLGVVHMHDLLRA  149 (149)
T ss_dssp             SEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHTCC
T ss_pred             cCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCCEEEEEEEHHHhhcC
Confidence            5677899999999999999999999999999999999999999999764

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.69  E-value=7e-08  Score=63.42  Aligned_cols=55  Identities=7%  Similarity=0.185  Sum_probs=49.7

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhcc
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~   76 (105)
                      +.+ +.+.++++.+++|+.+|..+|...+.++++|+++|+++|+||.+|+.+++..
T Consensus         7 ~~i-m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~   61 (133)
T 2ef7_A            7 KEY-MKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGK   61 (133)
T ss_dssp             GGT-SBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHT
T ss_pred             HHh-ccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEcHHHHHHHHhc
Confidence            345 6677999999999999999999999999999999999999999999988754

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.68  E-value=3.1e-08  Score=65.37  Aligned_cols=51  Identities=18%  Similarity=0.305  Sum_probs=46.9

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhC-----CcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVG-----VNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lg-----lr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      +.+.|+++.+++++.+|..+|...+     +++++|++ +|+++|+||.+||.+++.
T Consensus        79 m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A           79 MTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             SCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             hCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHH
Confidence            6678999999999999999999999     99999998 899999999999999873

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.67  E-value=4.8e-08  Score=64.48  Aligned_cols=49  Identities=22%  Similarity=0.360  Sum_probs=44.5

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      .++++.+++++.+|..+|...++++++|++ +|+++|+||++|+.+++..
T Consensus        92 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A           92 GVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             --CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             CCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence            578999999999999999999999999998 7999999999999998843

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.66  E-value=2.3e-08  Score=84.31  Aligned_cols=57  Identities=25%  Similarity=0.345  Sum_probs=51.4

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccC
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~   77 (105)
                      .+.+ +++.|+++.+++++.+|..+|...++++++|+++|+++||||++|+.+++..+
T Consensus       570 v~~i-Mt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve~G~lvGIVT~~Dll~~~~~~  626 (632)
T 3org_A          570 LVVP-CDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTERGKLVGIVEREDVAYGYSNS  626 (632)
T ss_dssp             -CCS-CCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEETTEEEEEEEGGGTEECCCC-
T ss_pred             cchh-hcCCCceecCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEehhhHHHHHhhh
Confidence            3445 88999999999999999999999999999999999999999999999988654

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.64  E-value=4.8e-08  Score=69.13  Aligned_cols=51  Identities=16%  Similarity=0.175  Sum_probs=47.4

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      ..|+++.+++++..|..+|...++++++|++ +|+++||||++|+.+++.+.
T Consensus       107 ~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~  158 (173)
T 3ocm_A          107 RDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGE  158 (173)
T ss_dssp             BCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCC
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCc
Confidence            6689999999999999999999999999996 79999999999999999653

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.63  E-value=1.3e-07  Score=64.63  Aligned_cols=55  Identities=22%  Similarity=0.265  Sum_probs=48.8

Q ss_pred             ccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          18 VSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        18 idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      +....+ +.+ |+++.+++++.+|..+|...++++++|++ +|+++|+||.+||.+++
T Consensus        17 ~~v~~i-m~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~   72 (159)
T 3fv6_A           17 LQVKDF-QSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRAS   72 (159)
T ss_dssp             CBGGGS-CBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             CCHHHH-cCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHh
Confidence            344455 445 88999999999999999999999999998 89999999999999987

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.62  E-value=9e-08  Score=65.63  Aligned_cols=56  Identities=11%  Similarity=0.055  Sum_probs=48.2

Q ss_pred             CCccccCC--CceEEeccCCHHHHHHHHHHhCCcEEEEeeC--CeEEEEEehHHHHHhhcc
Q psy6637          20 FEQCHIDP--APFQLVERTSLLKVHSIFSLVGVNHAYVTAI--GRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        20 l~~~~id~--sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~--GrLVGvVT~kDL~kaI~~   76 (105)
                      .+.+ +.+  .++++.+++|+.+|..+|...++++++|++.  |+++|+||.+||.+++..
T Consensus        40 v~di-M~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~   99 (156)
T 3oi8_A           40 VRDA-MITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFN   99 (156)
T ss_dssp             GGGT-CEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSC
T ss_pred             Hhhe-eeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHc
Confidence            3445 444  6899999999999999999999999999985  599999999999998754

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.61  E-value=6.4e-08  Score=67.85  Aligned_cols=57  Identities=18%  Similarity=0.210  Sum_probs=51.5

Q ss_pred             cCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHhhcc
Q psy6637          19 SFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        19 dl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~kaI~~   76 (105)
                      ....+ +.+.++++.+++++..|..+|...++++++|++. |+++|+||++||.+++..
T Consensus        76 ~v~~i-m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           76 PIRLV-MRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             BGGGT-SBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             CHHHH-hCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence            44555 6778999999999999999999999999999996 999999999999998865

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.61  E-value=1.1e-07  Score=64.20  Aligned_cols=57  Identities=5%  Similarity=-0.001  Sum_probs=51.2

Q ss_pred             cCCccccCC--CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          19 SFEQCHIDP--APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        19 dl~~~~id~--sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      ..+.+ +.+  .++++.+++|+.+|..+|...++++++|++ +|+++|+||.+||.+++..
T Consensus        29 ~v~di-m~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   88 (149)
T 3k2v_A           29 RVNDI-MHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDT   88 (149)
T ss_dssp             BGGGT-SBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCS
T ss_pred             CHHHH-hcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhc
Confidence            34455 677  899999999999999999999999999998 7999999999999998864

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=98.61  E-value=6.2e-08  Score=71.66  Aligned_cols=58  Identities=7%  Similarity=0.074  Sum_probs=52.0

Q ss_pred             cCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          19 SFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        19 dl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      ....+ +.+.|+++.+++++.+|..+|...++++++|++ +|+++||||++||.+++...
T Consensus       228 ~v~~~-m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~~  286 (296)
T 3ddj_A          228 VVKDV-MVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHI  286 (296)
T ss_dssp             BHHHH-SBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             CHHHH-hCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHHH
Confidence            34445 677899999999999999999999999999999 89999999999999998654

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.60  E-value=8.8e-08  Score=61.91  Aligned_cols=53  Identities=17%  Similarity=0.324  Sum_probs=48.7

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      +.+.++++.+++|+.+|..+|...+.++++|++ +|+++|+||.+||.+++...
T Consensus         7 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~   60 (122)
T 3kpb_A            7 LSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQN   60 (122)
T ss_dssp             CCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHTT
T ss_pred             hCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHhc
Confidence            557789999999999999999999999999998 89999999999999987654

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.59  E-value=7.9e-08  Score=67.04  Aligned_cols=50  Identities=14%  Similarity=0.005  Sum_probs=46.1

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEeeC--CeEEEEEehHHHHHhhcc
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI--GRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~--GrLVGvVT~kDL~kaI~~   76 (105)
                      ..++++.+++|+.+|..+|...++++++|++.  |+++|+||.+||.+++..
T Consensus        52 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~  103 (172)
T 3lhh_A           52 SDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIA  103 (172)
T ss_dssp             GGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHT
T ss_pred             HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhh
Confidence            45689999999999999999999999999986  999999999999998753

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.59  E-value=1e-07  Score=71.65  Aligned_cols=59  Identities=19%  Similarity=0.224  Sum_probs=51.3

Q ss_pred             ccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          18 VSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        18 idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      .....+ +++.|+++.+++++..|..+|...++++++|++ +|+++||||..|+.+++.+.
T Consensus       199 ~~v~~i-m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~e  258 (278)
T 2yvy_A          199 TRVAEI-MNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE  258 (278)
T ss_dssp             CBSTTT-SBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC---
T ss_pred             CcHHHH-hCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHHH
Confidence            345566 778899999999999999999999999999998 79999999999999998654

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.59  E-value=1.1e-07  Score=68.97  Aligned_cols=57  Identities=16%  Similarity=0.056  Sum_probs=50.8

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHhhccC
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~kaI~~~   77 (105)
                      .+.+ +.+.|+++.+++++.+|..+|...++++++|++. |+++|+||.+|+.+++...
T Consensus        74 v~~i-m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~  131 (213)
T 1vr9_A           74 VFNK-VSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA  131 (213)
T ss_dssp             SGGG-CBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS
T ss_pred             HHHH-ccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH
Confidence            4445 6678999999999999999999999999999985 9999999999999987543

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.58  E-value=8.1e-08  Score=65.95  Aligned_cols=55  Identities=15%  Similarity=0.348  Sum_probs=49.1

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      ...+ +.+.++++.+++|+..|..+|...++++++|++ +|+++|+||.+||.+++.
T Consensus         7 v~di-m~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~   62 (160)
T 2o16_A            7 VEDM-MTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQE   62 (160)
T ss_dssp             GGGT-SEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             HHHH-hcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Confidence            3445 567789999999999999999999999999998 799999999999998764

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.58  E-value=1.1e-07  Score=63.79  Aligned_cols=56  Identities=13%  Similarity=0.014  Sum_probs=48.9

Q ss_pred             cCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          19 SFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        19 dl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      ....+ +.+.|+++.+++++.+|..+|...++  ++|++ +|+++|+||++|+.+++...
T Consensus        88 ~v~~~-m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~  144 (150)
T 3lqn_A           88 KVEQV-MKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKK  144 (150)
T ss_dssp             BGGGT-CBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             CHHHH-hcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHH
Confidence            34555 66889999999999999999999986  99998 89999999999999988543

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.58  E-value=7.4e-08  Score=65.92  Aligned_cols=58  Identities=5%  Similarity=-0.064  Sum_probs=50.4

Q ss_pred             cCCccccCC--CceEEeccCCHHHHHHHHHHhCCcEEEEeeC-C---eEEEEEehHHHHHhhccC
Q psy6637          19 SFEQCHIDP--APFQLVERTSLLKVHSIFSLVGVNHAYVTAI-G---RLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        19 dl~~~~id~--sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-G---rLVGvVT~kDL~kaI~~~   77 (105)
                      ..+.+ +.+  .++++.+++++..|..+|...++++++|++. |   +++|+||++||.+++...
T Consensus        82 ~v~~~-m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~~  145 (159)
T 3fv6_A           82 PVHII-MTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSL  145 (159)
T ss_dssp             BGGGT-SEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHHH
T ss_pred             CHHHH-HcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHHH
Confidence            34455 555  7899999999999999999999999999985 5   999999999999988654

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=98.58  E-value=1.3e-07  Score=68.52  Aligned_cols=57  Identities=18%  Similarity=0.155  Sum_probs=51.4

Q ss_pred             cCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhcc
Q psy6637          19 SFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        19 dl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~   76 (105)
                      ....+ +.+.|+++.+++++..|..+|...+.++++|+++|+++|+||.+|+.+++..
T Consensus       149 ~v~~~-m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Givt~~dl~~~~~~  205 (280)
T 3kh5_A          149 VIDDY-ITRDVIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLLGS  205 (280)
T ss_dssp             BSGGG-CBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHTS
T ss_pred             CHHHH-hCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHhh
Confidence            44555 6678999999999999999999999999999999999999999999998853

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.58  E-value=3e-08  Score=67.49  Aligned_cols=48  Identities=6%  Similarity=0.011  Sum_probs=44.7

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEe-e--CCeEEEEEehHHHHHhhc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVT-A--IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt-~--~GrLVGvVT~kDL~kaI~   75 (105)
                      .++++.+++|+.+|..+|...++++++|+ +  .|+++|+||.+||.+++.
T Consensus        31 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~   81 (153)
T 3oco_A           31 SMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQAR   81 (153)
T ss_dssp             GCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHH
T ss_pred             heEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHh
Confidence            68999999999999999999999999999 4  499999999999998864

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.57  E-value=9e-08  Score=65.64  Aligned_cols=46  Identities=22%  Similarity=0.260  Sum_probs=42.6

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHH
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVR   71 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~   71 (105)
                      +.+ |+++.+++++.+|..+|...++++++|++ +|+++||||++|+.
T Consensus       109 m~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          109 LRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             CBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             cCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            445 89999999999999999999999999997 79999999999975

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=98.56  E-value=9.7e-08  Score=69.20  Aligned_cols=53  Identities=19%  Similarity=0.161  Sum_probs=48.1

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHhh
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRNDS   74 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~kaI   74 (105)
                      ..+ +.+.|+++.+++++.+|..+|...++++++|++. |+++|+||++|+.+++
T Consensus       226 ~~~-m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~dil~~l  279 (280)
T 3kh5_A          226 EEI-MKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYF  279 (280)
T ss_dssp             HHH-SBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHGGGG
T ss_pred             HHH-hcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHHHHHHhh
Confidence            344 5678999999999999999999999999999984 6999999999999886

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=98.56  E-value=2e-07  Score=70.04  Aligned_cols=52  Identities=13%  Similarity=0.126  Sum_probs=48.3

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccCc
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLSS   78 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~~   78 (105)
                      +.|+++.+++++..|..+|...++++++|++ +|+++||||+.||.+++....
T Consensus       265 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~~~~  317 (334)
T 2qrd_G          265 DGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDK  317 (334)
T ss_dssp             CCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHHSCC
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHHhcc
Confidence            3789999999999999999999999999998 799999999999999987663

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.54  E-value=2.9e-07  Score=60.71  Aligned_cols=48  Identities=13%  Similarity=0.171  Sum_probs=44.9

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhh
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI   74 (105)
                      +.++++.+++|+.+|..+|...+.++++|+++|+++|+||.+||.+++
T Consensus        17 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~   64 (135)
T 2rc3_A           17 HTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKS   64 (135)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHG
T ss_pred             CCcEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEehHHHHHHH
Confidence            678999999999999999999999999999999999999999998643

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.54  E-value=2.5e-07  Score=61.07  Aligned_cols=54  Identities=13%  Similarity=0.112  Sum_probs=47.8

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHH-Hhhc
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVR-NDSH   75 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~-kaI~   75 (105)
                      ..+ +.+.++++.+++|+.+|..+|...++++++|++ +|+++|+||.+||. +++.
T Consensus        10 ~~i-m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   65 (138)
T 2yzi_A           10 KVY-MTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV   65 (138)
T ss_dssp             GGT-CBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT
T ss_pred             HHH-hcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Confidence            344 557899999999999999999999999999998 89999999999997 4543

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.51  E-value=3.4e-07  Score=60.28  Aligned_cols=55  Identities=7%  Similarity=0.125  Sum_probs=49.1

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHH-HHhhc
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEV-RNDSH   75 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL-~kaI~   75 (105)
                      ...+ +.+.++++.+++|+.+|..+|...++++++|++ +|+++|+||.+|+ .+++.
T Consensus        10 v~~i-m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   66 (138)
T 2p9m_A           10 VKDV-MTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIR   66 (138)
T ss_dssp             GGGT-SBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTT
T ss_pred             HHHh-hcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence            3445 667889999999999999999999999999998 7999999999999 88764

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.50  E-value=1.8e-07  Score=68.29  Aligned_cols=56  Identities=14%  Similarity=0.050  Sum_probs=50.0

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      +.+ +.+.|+++.+++++.+|..+|...++++++|++ +|+|+||||.+|+.+++...
T Consensus        10 ~~i-m~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~   66 (245)
T 3l2b_A           10 EDL-EMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDI   66 (245)
T ss_dssp             GGS-CCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCC
T ss_pred             HHh-cCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHh
Confidence            345 567799999999999999999999999999998 59999999999999988543

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.50  E-value=1.5e-07  Score=62.09  Aligned_cols=47  Identities=11%  Similarity=0.037  Sum_probs=44.5

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEeeC--CeEEEEEehHHHHHhhc
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVTAI--GRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~--GrLVGvVT~kDL~kaI~   75 (105)
                      ++++.+++|+.+|..+|...+.++++|++.  |+++|+||.+||.+++.
T Consensus        15 ~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~   63 (127)
T 3nqr_A           15 MITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR   63 (127)
T ss_dssp             CCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGS
T ss_pred             eEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHh
Confidence            789999999999999999999999999985  89999999999999875

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.50  E-value=9.4e-08  Score=66.59  Aligned_cols=54  Identities=9%  Similarity=0.028  Sum_probs=46.1

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      ...+ +.+.|+++.+++++.+|..+|...+  +++|++ +|+++||||++|+.+++..
T Consensus        88 v~~i-m~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~~  142 (156)
T 3k6e_A           88 IVHM-TKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNA  142 (156)
T ss_dssp             GGGT-CBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             HHHh-hcCCceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHHH
Confidence            3445 6788999999999999999998765  588886 8999999999999999843

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.49  E-value=2.7e-07  Score=62.23  Aligned_cols=51  Identities=18%  Similarity=0.184  Sum_probs=47.3

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee---CCeEEEEEehHHHHHhhc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA---IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~---~GrLVGvVT~kDL~kaI~   75 (105)
                      +.+.++++.+++|+.+|..+|...++++++|++   +|+++|+||.+||.+++.
T Consensus        19 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~   72 (164)
T 2pfi_A           19 MNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQ   72 (164)
T ss_dssp             CBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred             cCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHH
Confidence            567889999999999999999999999999998   599999999999998874

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.49  E-value=6.1e-07  Score=63.39  Aligned_cols=74  Identities=9%  Similarity=-0.045  Sum_probs=55.9

Q ss_pred             ChHHHHhHHHHHhcCcccCCcccc-CCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC--CeEEEEEehHHHHHhhc
Q psy6637           2 SPEDQKKWEEEEMGQKVSFEQCHI-DPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI--GRLVGVVGLKEVRNDSH   75 (105)
Q Consensus         2 ~~~e~~~we~~~l~~~idl~~~~i-d~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~--GrLVGvVT~kDL~kaI~   75 (105)
                      +++|++.....---..+....+.. ...++++.+++|+.+|..+|...++++++|++.  |+++|+||.+||.+++.
T Consensus        20 ~~~e~~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~   96 (173)
T 3ocm_A           20 GVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLI   96 (173)
T ss_dssp             CHHHHHHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHH
T ss_pred             CHHHHHHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHh
Confidence            344544444333334445566622 235789999999999999999999999999973  89999999999998874

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=98.49  E-value=2.9e-07  Score=68.86  Aligned_cols=49  Identities=22%  Similarity=0.360  Sum_probs=46.4

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      .++++.+++++..|..+|...++++++|++ +|+++||||.+||.+++.+
T Consensus       271 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~~  320 (323)
T 3t4n_C          271 GVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL  320 (323)
T ss_dssp             CCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             CCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHHh
Confidence            689999999999999999999999999998 7999999999999999854

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.49  E-value=2.2e-07  Score=70.69  Aligned_cols=53  Identities=11%  Similarity=0.054  Sum_probs=49.3

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      +++.|+++.+++++..|..+|...++++++|++ +|+++||||..|+.+++...
T Consensus       207 m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~e  260 (286)
T 2oux_A          207 LNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDE  260 (286)
T ss_dssp             SBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             cCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence            667899999999999999999999999999998 79999999999999988654

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.49  E-value=2.4e-07  Score=62.15  Aligned_cols=49  Identities=10%  Similarity=0.024  Sum_probs=45.8

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      .++++.+++|+.+|..+|...++++++|++ +|+++|+||.+||.+++..
T Consensus        26 ~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~   75 (150)
T 3lqn_A           26 KVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILG   75 (150)
T ss_dssp             GSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBC
T ss_pred             ceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence            388999999999999999999999999997 8999999999999998853

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.48  E-value=1.8e-07  Score=63.70  Aligned_cols=53  Identities=13%  Similarity=0.083  Sum_probs=46.8

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      ..+ +.+.|+++.+++++.+|..+|...++  ++|++ +|+++|+||++|+.+++..
T Consensus        89 ~~~-m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~  142 (159)
T 1yav_A           89 EEV-MLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNK  142 (159)
T ss_dssp             HHH-SBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             HHh-cCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHH
Confidence            334 66789999999999999999998887  99998 8999999999999998854

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.48  E-value=2.1e-07  Score=63.08  Aligned_cols=47  Identities=9%  Similarity=0.175  Sum_probs=44.5

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhc
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~   75 (105)
                      .+++.+++|+.+|..+|...++++++|.++|+++|+||.+||.+++.
T Consensus        23 ~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~   69 (157)
T 4fry_A           23 IYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVV   69 (157)
T ss_dssp             CCEEETTSBHHHHHHHHHHHTCSEEEEESSSSEEEEEEHHHHHHHSG
T ss_pred             CeEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHH
Confidence            38999999999999999999999999999999999999999999874

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.48  E-value=3.2e-07  Score=60.71  Aligned_cols=51  Identities=10%  Similarity=-0.052  Sum_probs=45.9

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEeeC--CeEEEEEehHHHHHhhccC
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI--GRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~--GrLVGvVT~kDL~kaI~~~   77 (105)
                      +.++++.+++|+.+|..+|...++++++|++.  |+++|+||.+||.+++...
T Consensus        15 ~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~   67 (129)
T 3jtf_A           15 SRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEP   67 (129)
T ss_dssp             GGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCT
T ss_pred             HHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccC
Confidence            34689999999999999999999999999985  8999999999999987543

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.47  E-value=2.8e-07  Score=62.07  Aligned_cols=55  Identities=18%  Similarity=0.175  Sum_probs=48.4

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      .+.+ +.+.|+++.+++++..|..+|...++  ++|++ +|+++|+||++|+.+++...
T Consensus        85 v~~~-m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~  140 (157)
T 2emq_A           85 VEEV-MNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQ  140 (157)
T ss_dssp             GGGT-CBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHT
T ss_pred             HHHH-hCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence            4445 67889999999999999999999987  88988 79999999999999998554

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.47  E-value=5.7e-07  Score=59.85  Aligned_cols=55  Identities=22%  Similarity=0.251  Sum_probs=48.7

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-C--eEEEEEehHHHHHhhcc
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-G--RLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-G--rLVGvVT~kDL~kaI~~   76 (105)
                      ..+ +.+.++++.+++|+.+|..+|...++++++|++. |  +++|+||.+||.+++..
T Consensus         8 ~~i-m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~   65 (141)
T 2rih_A            8 SEL-LKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQ   65 (141)
T ss_dssp             GGG-CCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHT
T ss_pred             HHH-hcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhc
Confidence            445 5678999999999999999999999999999985 5  99999999999998743

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.47  E-value=2.5e-07  Score=61.64  Aligned_cols=51  Identities=2%  Similarity=-0.057  Sum_probs=46.1

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEee--CCeEEEEEehHHHHHhhccC
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA--IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~--~GrLVGvVT~kDL~kaI~~~   77 (105)
                      ..++++.+++|+.+|..+|...++++++|++  .|+++|+||.+||.+++...
T Consensus        12 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~   64 (130)
T 3hf7_A           12 NEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK   64 (130)
T ss_dssp             GGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSS
T ss_pred             HHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhcc
Confidence            3578999999999999999999999999996  48999999999999988653

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.47  E-value=2.7e-07  Score=62.15  Aligned_cols=58  Identities=10%  Similarity=0.084  Sum_probs=50.5

Q ss_pred             ccCCccccCC--CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          18 VSFEQCHIDP--APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        18 idl~~~~id~--sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      +..+.+ +.+  .++++.+++|+..|..+|...++++++|++ +|+++|+||.+||.+++..
T Consensus        11 ~~v~~i-m~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~   71 (157)
T 2emq_A           11 MTVKPF-LIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILG   71 (157)
T ss_dssp             CBSTTT-CEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBC
T ss_pred             CcHHhh-ccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhc
Confidence            344556 545  788999999999999999999999999998 7999999999999998754

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.47  E-value=4.2e-07  Score=59.89  Aligned_cols=52  Identities=13%  Similarity=0.027  Sum_probs=47.7

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      +...++++.+++|+.+|..+|...++++++|++ +|+++|+||.+|+.+++..
T Consensus        17 ~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   69 (144)
T 2nyc_A           17 TQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG   69 (144)
T ss_dssp             BCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred             CCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcc
Confidence            557789999999999999999999999999998 7999999999999987753

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.46  E-value=5.5e-07  Score=61.26  Aligned_cols=53  Identities=21%  Similarity=0.222  Sum_probs=48.1

Q ss_pred             ccccCCCceEEeccCCHHHHHHHHHHhCCcE-EEEeeCCeEEEEEehHHHHHhhc
Q psy6637          22 QCHIDPAPFQLVERTSLLKVHSIFSLVGVNH-AYVTAIGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        22 ~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~-l~Vt~~GrLVGvVT~kDL~kaI~   75 (105)
                      .+ +.+.++++.+++|+.+|..+|...++++ ++|++.++++|+||.+||.+++.
T Consensus        20 ~i-m~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~~~vGivt~~dl~~~~~   73 (157)
T 1o50_A           20 KL-ISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSG   73 (157)
T ss_dssp             TS-SCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred             hc-ccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECCEEEEEEEHHHHHHHHh
Confidence            44 5678999999999999999999999999 99999779999999999998753

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=98.45  E-value=8e-07  Score=64.72  Aligned_cols=53  Identities=9%  Similarity=0.265  Sum_probs=47.2

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHh---CCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLV---GVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~L---glr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      ..+ |.+.++++.+++|+.+|..+|+..   +++++||++ .|+|+|+||.+||.++.
T Consensus        57 ~~i-M~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~  113 (205)
T 3kxr_A           57 GRY-TDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHE  113 (205)
T ss_dssp             GGG-CBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTSC
T ss_pred             Hhh-ccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhCC
Confidence            345 778899999999999999999987   899999998 79999999999998753

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.45  E-value=3.2e-07  Score=61.40  Aligned_cols=48  Identities=8%  Similarity=-0.055  Sum_probs=44.9

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEeeC--CeEEEEEehHHHHHhhc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAI--GRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~--GrLVGvVT~kDL~kaI~   75 (105)
                      .++++.+++|+.+|..+|...++++++|++.  |+++|+||.+||.+++.
T Consensus        14 ~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~   63 (136)
T 3lfr_A           14 QMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLIL   63 (136)
T ss_dssp             GCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGG
T ss_pred             HEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHH
Confidence            4689999999999999999999999999985  79999999999999876

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.44  E-value=3.7e-07  Score=62.10  Aligned_cols=52  Identities=15%  Similarity=0.099  Sum_probs=47.5

Q ss_pred             cCC--CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          25 IDP--APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        25 id~--sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      +.+  .++++.+++++.+|..+|...++++++|++ +|+++|+||.+||.+++..
T Consensus        20 m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~   74 (159)
T 1yav_A           20 MIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFG   74 (159)
T ss_dssp             SEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBC
T ss_pred             hCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhh
Confidence            445  789999999999999999999999999997 6899999999999998754

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.44  E-value=5.3e-07  Score=61.96  Aligned_cols=49  Identities=10%  Similarity=0.079  Sum_probs=45.6

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      .++++.+++|+.+|..+|...++++++|++ +|+++|+||.+||.+++..
T Consensus        36 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   85 (165)
T 3fhm_A           36 DVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAG   85 (165)
T ss_dssp             CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             CCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence            589999999999999999999999999998 7999999999999987643

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=98.43  E-value=5.2e-07  Score=67.80  Aligned_cols=52  Identities=13%  Similarity=0.108  Sum_probs=48.2

Q ss_pred             CCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          26 DPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        26 d~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      .+.|+++.+++++..|..+|...++++++|++ +|+++|+||..||.+++...
T Consensus       272 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~~~  324 (330)
T 2v8q_E          272 FEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLT  324 (330)
T ss_dssp             CCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHSS
T ss_pred             cCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhh
Confidence            37899999999999999999999999999998 59999999999999998654

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.41  E-value=3.6e-07  Score=59.95  Aligned_cols=51  Identities=10%  Similarity=0.100  Sum_probs=45.7

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHH-Hhhc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVR-NDSH   75 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~-kaI~   75 (105)
                      +.+.++++.+++|+.+|..+|...++++++|++ +|+++|+||.+||. +++.
T Consensus        14 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   66 (133)
T 1y5h_A           14 MNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLA   66 (133)
T ss_dssp             SEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGG
T ss_pred             hcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHh
Confidence            446788999999999999999999999999995 89999999999998 5654

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.39  E-value=9e-07  Score=61.92  Aligned_cols=56  Identities=13%  Similarity=0.086  Sum_probs=50.0

Q ss_pred             cCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          19 SFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        19 dl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      ....+ +.+.++++.+++|+.+|..+|...++++++|++ +|+++|+||.+||.+++.
T Consensus        10 ~v~~i-m~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~   66 (184)
T 1pvm_A           10 RVEKI-MNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFI   66 (184)
T ss_dssp             BGGGT-SBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTG
T ss_pred             CHHHh-cCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Confidence            34455 667899999999999999999999999999997 799999999999998865

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=98.38  E-value=7.2e-07  Score=67.93  Aligned_cols=57  Identities=7%  Similarity=0.046  Sum_probs=50.4

Q ss_pred             cCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC---CeEEEEEehHHHHHhhcc
Q psy6637          19 SFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI---GRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        19 dl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~---GrLVGvVT~kDL~kaI~~   76 (105)
                      --..+ |.+.+++|.+++++.+|..+|...++++++|++.   |+|||+||++||.+++..
T Consensus        14 ~v~di-Mt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~   73 (250)
T 2d4z_A           14 QVGDI-MVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQR   73 (250)
T ss_dssp             BTTSS-SBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHH
T ss_pred             ChHHh-cCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHH
Confidence            34456 6678999999999999999999999999999984   789999999999988753

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.38  E-value=3.9e-07  Score=66.46  Aligned_cols=54  Identities=9%  Similarity=0.054  Sum_probs=43.6

Q ss_pred             CCccccC-CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          20 FEQCHID-PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        20 l~~~~id-~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      .+.+ +. ..|+++.+++++.+|..+|...++++++|++ +|+|+|+||++|+.++.
T Consensus       187 v~~i-m~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          187 VDYV-MTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLISTH  242 (245)
T ss_dssp             HHHH-SBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC------
T ss_pred             eeeE-ecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhchh
Confidence            4445 55 7899999999999999999999999999997 79999999999998875

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.38  E-value=5.7e-07  Score=62.56  Aligned_cols=49  Identities=14%  Similarity=0.186  Sum_probs=44.2

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      ..++|.+++|+.+|..+|...|++++||++ .|+++|+||.+|+.+++..
T Consensus        26 ~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~   75 (156)
T 3k6e_A           26 NLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQME   75 (156)
T ss_dssp             SSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHH
T ss_pred             HeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhh
Confidence            457899999999999999999999999997 6999999999999887743

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.34  E-value=3.9e-07  Score=60.22  Aligned_cols=49  Identities=10%  Similarity=0.072  Sum_probs=44.4

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEeeC--CeEEEEEehHHHHHhhcc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAI--GRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~--GrLVGvVT~kDL~kaI~~   76 (105)
                      ..+++.+++|+.+|..+|...++++++|++.  |+++|+||.+||.+++..
T Consensus        17 ~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~   67 (130)
T 3i8n_A           17 VVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQS   67 (130)
T ss_dssp             CCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHT
T ss_pred             HEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhc
Confidence            3458999999999999999999999999984  899999999999998753

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.34  E-value=3.6e-07  Score=62.88  Aligned_cols=47  Identities=19%  Similarity=0.157  Sum_probs=43.8

Q ss_pred             ceEE--eccCCHHHHHHHHHHhCCcEEEEe---eCCeEEEEEehHHHHHhhc
Q psy6637          29 PFQL--VERTSLLKVHSIFSLVGVNHAYVT---AIGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        29 P~qv--~~~tsL~kv~~LF~~Lglr~l~Vt---~~GrLVGvVT~kDL~kaI~   75 (105)
                      |+++  .+++++.+|..+|...++++++|+   +.|+++|+||.+||.+++.
T Consensus        25 ~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~   76 (185)
T 2j9l_A           25 LLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIE   76 (185)
T ss_dssp             CCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred             eEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHH
Confidence            7788  999999999999999999999999   5899999999999998864

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.29  E-value=7.4e-07  Score=59.00  Aligned_cols=47  Identities=13%  Similarity=0.007  Sum_probs=43.7

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      .++++.+++++.+|..+|...++++++|++ +|+++|+||.+||.+++
T Consensus        16 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~   63 (152)
T 4gqw_A           16 DLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALD   63 (152)
T ss_dssp             TCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhh
Confidence            688999999999999999999999999998 58999999999998754

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=98.29  E-value=1.5e-06  Score=64.21  Aligned_cols=51  Identities=12%  Similarity=0.126  Sum_probs=48.1

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      +.+.++++.+++++..|..+|...++++++|++ +|+++|+||.+|+.+++.
T Consensus       162 m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~  213 (296)
T 3ddj_A          162 MSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLA  213 (296)
T ss_dssp             SBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             hcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence            567899999999999999999999999999999 899999999999999875

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.28  E-value=6.6e-07  Score=61.13  Aligned_cols=47  Identities=19%  Similarity=0.017  Sum_probs=43.5

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      .++++.+++|+.+|..+|...++++++|++ +|+++|+||.+||.++.
T Consensus        15 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~   62 (180)
T 3sl7_A           15 NLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALD   62 (180)
T ss_dssp             GCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-
T ss_pred             CceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhh
Confidence            688999999999999999999999999998 79999999999998653

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=98.27  E-value=1.4e-06  Score=65.16  Aligned_cols=53  Identities=13%  Similarity=0.029  Sum_probs=48.6

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      +.+.++++.+++++..|..+|...++++++|++ +|+++|+||.+|+.+++...
T Consensus       196 m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~  249 (323)
T 3t4n_C          196 TQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGG  249 (323)
T ss_dssp             BCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTT
T ss_pred             CCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhc
Confidence            457889999999999999999999999999997 69999999999999988654

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.27  E-value=1.3e-06  Score=63.26  Aligned_cols=51  Identities=14%  Similarity=0.114  Sum_probs=47.5

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      +.+.|+++.+++|+.+|..+|...++++++|++ +|+++|+||.+|+.+++.
T Consensus        19 ~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~~   70 (213)
T 1vr9_A           19 VTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL   70 (213)
T ss_dssp             CBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT
T ss_pred             hcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhcC
Confidence            667899999999999999999999999999998 899999999999988764

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=98.23  E-value=1.7e-06  Score=70.74  Aligned_cols=59  Identities=19%  Similarity=0.224  Sum_probs=52.7

Q ss_pred             ccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          18 VSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        18 idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      ...+.+ +++.|+++.+++++.+|..+|...+++.++|++ +|+++|+||.+|+.+++...
T Consensus       219 ~~v~di-m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~e  278 (473)
T 2zy9_A          219 TRVAEI-MNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE  278 (473)
T ss_dssp             SBGGGT-SBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred             CcHHHH-hCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHHH
Confidence            345556 778899999999999999999999999999998 79999999999999988654

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.21  E-value=2.5e-06  Score=64.84  Aligned_cols=50  Identities=16%  Similarity=0.283  Sum_probs=46.0

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHh-----CCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLV-----GVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~L-----glr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      +.+.++++.+++++.+|..+|+..     +++++||++ +|+++|+||.+||.++.
T Consensus       143 M~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~~  198 (286)
T 2oux_A          143 MTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND  198 (286)
T ss_dssp             CBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC
T ss_pred             CCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcCC
Confidence            678899999999999999999998     889999998 79999999999998763

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.16  E-value=1.1e-05  Score=60.62  Aligned_cols=51  Identities=22%  Similarity=0.318  Sum_probs=46.5

Q ss_pred             ccccCCCceEEeccCCHHHHHHHHHHh-----CCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637          22 QCHIDPAPFQLVERTSLLKVHSIFSLV-----GVNHAYVTA-IGRLVGVVGLKEVRND   73 (105)
Q Consensus        22 ~~~id~sP~qv~~~tsL~kv~~LF~~L-----glr~l~Vt~-~GrLVGvVT~kDL~ka   73 (105)
                      .+ |.+.++++.+++++..|..+|+..     ++.++||++ .|+++|+||.+|+..+
T Consensus       139 ~i-M~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~  195 (278)
T 2yvy_A          139 GL-MTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA  195 (278)
T ss_dssp             GT-CBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS
T ss_pred             hh-cCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC
Confidence            35 678899999999999999999998     799999998 7999999999999875

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=98.15  E-value=3.8e-06  Score=63.02  Aligned_cols=52  Identities=12%  Similarity=0.010  Sum_probs=48.3

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      +.+.++++.+++++.+|..+|...++++++|++ +|+++|+||.+||.+++..
T Consensus       191 m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~  243 (334)
T 2qrd_G          191 TWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQD  243 (334)
T ss_dssp             BCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHTT
T ss_pred             ccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhhc
Confidence            568899999999999999999999999999998 6999999999999998754

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=98.15  E-value=2.8e-06  Score=63.79  Aligned_cols=51  Identities=12%  Similarity=-0.005  Sum_probs=47.3

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee--CCeEEEEEehHHHHHhhc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA--IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~--~GrLVGvVT~kDL~kaI~   75 (105)
                      +.+.++++.+++++.+|..+|...++++++|++  +|+++|+||.+|+.+++.
T Consensus       124 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~  176 (330)
T 2v8q_E          124 SFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLK  176 (330)
T ss_dssp             SCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHH
T ss_pred             ccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHH
Confidence            357789999999999999999999999999998  799999999999999874

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=98.14  E-value=6.1e-06  Score=60.00  Aligned_cols=56  Identities=13%  Similarity=0.120  Sum_probs=48.5

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH-hhcc
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN-DSHL   76 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k-aI~~   76 (105)
                      .+.+ +.+.++++.+++++.+|..+|...++++++|++ +|+++|+||.+|+.+ ++..
T Consensus        62 v~~~-m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~  119 (282)
T 2yzq_A           62 LAML-VKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAK  119 (282)
T ss_dssp             --CC-CBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT
T ss_pred             HHHH-cCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhc
Confidence            3445 556789999999999999999999999999998 589999999999998 7754

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=98.12  E-value=3.6e-06  Score=69.16  Aligned_cols=55  Identities=18%  Similarity=0.243  Sum_probs=49.6

Q ss_pred             CCccccCCCceEEecc-CCHHHHHHHHHHhCCcEEEEee--CCeEEEEEehHHHHHhhc
Q psy6637          20 FEQCHIDPAPFQLVER-TSLLKVHSIFSLVGVNHAYVTA--IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        20 l~~~~id~sP~qv~~~-tsL~kv~~LF~~Lglr~l~Vt~--~GrLVGvVT~kDL~kaI~   75 (105)
                      .+.+ |.+.|+++.++ +|+.+|..+|...++++++|++  +|+++||||.+||++++.
T Consensus       386 V~di-M~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~  443 (527)
T 3pc3_A          386 IAEL-ELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIV  443 (527)
T ss_dssp             GGGG-CCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHH
T ss_pred             HHHh-CcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHH
Confidence            3445 56789999999 9999999999999999999998  899999999999998774

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.02  E-value=1.3e-05  Score=64.89  Aligned_cols=57  Identities=14%  Similarity=0.223  Sum_probs=50.7

Q ss_pred             cCCccccCC-CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          19 SFEQCHIDP-APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        19 dl~~~~id~-sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      .++.+ +.+ .|+++.+++++.++..+|...++++++|++ +|+++|+||++|+.+++..
T Consensus       153 ~v~~i-m~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          153 PISEH-MTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             BTTTS-CCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             cHHHH-cCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence            34445 555 789999999999999999999999999998 8999999999999998864

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=97.94  E-value=1.7e-05  Score=65.90  Aligned_cols=52  Identities=13%  Similarity=0.202  Sum_probs=48.2

Q ss_pred             cCC-CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          25 IDP-APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        25 id~-sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      +.+ .|+++.+++++.++..+|...+++.++|++ +|+|+|+||.+|+.+++..
T Consensus       181 M~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          181 MTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             CCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             cccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence            444 889999999999999999999999999998 8999999999999999865

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=97.90  E-value=1.6e-05  Score=64.35  Aligned_cols=55  Identities=15%  Similarity=0.209  Sum_probs=49.1

Q ss_pred             ccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee---CCeEEEEEehHHHHHh
Q psy6637          18 VSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA---IGRLVGVVGLKEVRND   73 (105)
Q Consensus        18 idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~---~GrLVGvVT~kDL~ka   73 (105)
                      ..++.. +.+.++++.+++++.++..+|...+.++++|++   +|+++|+||.+||+++
T Consensus        90 ~~~~~i-m~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~  147 (491)
T 1zfj_A           90 KRSENG-VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI  147 (491)
T ss_dssp             HHHTTT-TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC
T ss_pred             hhHHhc-CcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhh
Confidence            344556 678899999999999999999999999999997   8999999999999874

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=97.85  E-value=4.9e-05  Score=62.11  Aligned_cols=62  Identities=21%  Similarity=0.321  Sum_probs=51.3

Q ss_pred             HHHhcCcccCC-----ccccCCCceEEeccCCHHHHHHHHHHh-----CCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637          11 EEEMGQKVSFE-----QCHIDPAPFQLVERTSLLKVHSIFSLV-----GVNHAYVTA-IGRLVGVVGLKEVRND   73 (105)
Q Consensus        11 ~~~l~~~idl~-----~~~id~sP~qv~~~tsL~kv~~LF~~L-----glr~l~Vt~-~GrLVGvVT~kDL~ka   73 (105)
                      .+++.+.+.+.     .+ +.+.++++.+++++.+|...|+..     +++++||++ +|+++|+||.+|+.++
T Consensus       143 ~~~i~~~l~~~~~~v~~i-M~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~  215 (473)
T 2zy9_A          143 RAEVEALARYEEDEAGGL-MTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA  215 (473)
T ss_dssp             HHHHHHHHTSCTTBSTTT-CBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS
T ss_pred             HHHHHHHhcCCCCCHHHh-CCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC
Confidence            34444445554     45 778899999999999999999987     489999998 6999999999999875

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=97.85  E-value=1.8e-05  Score=65.00  Aligned_cols=57  Identities=11%  Similarity=0.019  Sum_probs=48.6

Q ss_pred             ccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-----CeEEEEEehHHHHHhhccC
Q psy6637          18 VSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-----GRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        18 idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-----GrLVGvVT~kDL~kaI~~~   77 (105)
                      ...+.+ +.+.++++.+++++.+|..+|...++  ++|++.     |+++||||+.||++++...
T Consensus       451 ~~V~~i-m~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~  512 (527)
T 3pc3_A          451 DPAIKA-LNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAG  512 (527)
T ss_dssp             SBGGGG-EETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTC
T ss_pred             CcHHHH-hcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhc
Confidence            345566 77889999999999999999977665  688876     9999999999999999665

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=97.81  E-value=3.5e-05  Score=63.75  Aligned_cols=59  Identities=20%  Similarity=0.260  Sum_probs=49.4

Q ss_pred             HhcCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637          13 EMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN   72 (105)
Q Consensus        13 ~l~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k   72 (105)
                      ++......+.. +...|+++.+++++.+|..++...+.+++||++ +|+|+||||.+||+.
T Consensus        84 ~V~~Vk~~~~~-m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~  143 (496)
T 4fxs_A           84 QVHQVKIFEAG-VVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRF  143 (496)
T ss_dssp             HHHHHHHCCC---CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTT
T ss_pred             HHHhccccccc-cccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhh
Confidence            33334455666 558899999999999999999999999999998 899999999999973

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=97.79  E-value=3.4e-05  Score=64.02  Aligned_cols=57  Identities=16%  Similarity=0.246  Sum_probs=49.3

Q ss_pred             cCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee---CCeEEEEEehHHHHH
Q psy6637          15 GQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA---IGRLVGVVGLKEVRN   72 (105)
Q Consensus        15 ~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~---~GrLVGvVT~kDL~k   72 (105)
                      .+....+.. +.+.|+++.+++|+.++..++...+++++||++   +|+|+|+||.+||+.
T Consensus       110 ~~V~~~~~~-m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~  169 (511)
T 3usb_A          110 DKVKRSESG-VISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF  169 (511)
T ss_dssp             HHHHTSSSC-SSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT
T ss_pred             HHhhccccc-cccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh
Confidence            333445555 667899999999999999999999999999998   689999999999975

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=97.74  E-value=5.4e-06  Score=67.47  Aligned_cols=66  Identities=20%  Similarity=0.298  Sum_probs=6.9

Q ss_pred             ChHHHHhHHHHHhcCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637           2 SPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN   72 (105)
Q Consensus         2 ~~~e~~~we~~~l~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k   72 (105)
                      +++++..    ++.....++.. +.+.|+++.+++++.+|..+|...++++++|++ +|+|+|+||.+||++
T Consensus        83 ~~e~~~~----~v~~v~~~~~i-M~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~  149 (494)
T 1vrd_A           83 TPDEQAR----QVSIVKKTENG-IIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRF  149 (494)
T ss_dssp             CHHHHHH----HHHHHHTC-----------------------------------------------------
T ss_pred             ChHHHHH----HHHhhhhHhhc-CccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHh
Confidence            5555433    23334456666 567899999999999999999999999999998 689999999999976

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=97.71  E-value=4.9e-06  Score=68.63  Aligned_cols=57  Identities=14%  Similarity=0.030  Sum_probs=0.4

Q ss_pred             CCccccCCC--ceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          20 FEQCHIDPA--PFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        20 l~~~~id~s--P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      .+.+ +.+.  |+++.+++++.+|..+|...++++++|++ +|+|+|+||.+||.+++...
T Consensus       163 V~di-M~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~  222 (503)
T 1me8_A          163 VSDM-MTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCH  222 (503)
T ss_dssp             ------------------------------------------------------------C
T ss_pred             HHHH-hCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcc
Confidence            3445 5566  99999999999999999999999999998 89999999999999988644

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=97.70  E-value=5.6e-06  Score=67.39  Aligned_cols=57  Identities=16%  Similarity=0.226  Sum_probs=6.0

Q ss_pred             CCccccCC--CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          20 FEQCHIDP--APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        20 l~~~~id~--sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      .+.+ +.+  .|+++.+++++.+|..+|...++++++|++ +|+|+|+||++|+.+++...
T Consensus       157 v~~i-m~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~  216 (494)
T 1vrd_A          157 IKDL-MTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHP  216 (494)
T ss_dssp             -----------------------------------------------------CHHHHTCT
T ss_pred             HHHH-hCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhccc
Confidence            4445 556  899999999999999999999999999998 89999999999999988543

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.66  E-value=1.2e-05  Score=66.05  Aligned_cols=68  Identities=22%  Similarity=0.199  Sum_probs=32.6

Q ss_pred             CChHHHHhHHHHHhcCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC----CeEEEEEehHHHHHh
Q psy6637           1 MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI----GRLVGVVGLKEVRND   73 (105)
Q Consensus         1 ~~~~e~~~we~~~l~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~----GrLVGvVT~kDL~ka   73 (105)
                      ++|+++.+.-.    .....+.. +-+.|+++.+++++.+|..+|...+++.+||++.    |+|+|+||.+||+++
T Consensus        95 ~t~e~~~~~v~----~v~~~~~i-m~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~  166 (514)
T 1jcn_A           95 CTPEFQANEVR----KVKNFEQG-FITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFL  166 (514)
T ss_dssp             SCHHHHHHHHH----HHHTCCTT-SCSSCCCCCC-----------------CEESCC--------CCEECTTTTC--
T ss_pred             CCHHHHHHHHH----hhhhhhhc-cccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhh
Confidence            36777654322    22245555 4467999999999999999999999999999986    899999999999764

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=97.61  E-value=8.2e-06  Score=66.71  Aligned_cols=56  Identities=13%  Similarity=0.221  Sum_probs=1.0

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      ++.+ +.+.|+++.+++++.++..+|...+++.++|++ +|+++|+||++||.++++.
T Consensus       152 v~~i-m~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~~  208 (486)
T 2cu0_A          152 VKEL-MTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKKY  208 (486)
T ss_dssp             --------------------------------------------------------CC
T ss_pred             HHHH-ccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhhc
Confidence            3444 555789999999999999999999999999998 7999999999999998763

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=97.61  E-value=9.3e-06  Score=67.03  Aligned_cols=56  Identities=21%  Similarity=0.302  Sum_probs=3.6

Q ss_pred             CcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHH
Q psy6637          16 QKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRN   72 (105)
Q Consensus        16 ~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~k   72 (105)
                      ....++.. +...|+++.+++++.+|..+|...++++++|+++|+|+||||.+||+.
T Consensus        86 ~vk~~~~~-m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~~  141 (490)
T 4avf_A           86 KVKKHETA-IVRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLRV  141 (490)
T ss_dssp             HHHHCCC--------------------------------------------------
T ss_pred             hhcccccC-cccCceEeCCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhhh
Confidence            33455666 557899999999999999999999999999999999999999999964

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=97.58  E-value=9.4e-06  Score=66.99  Aligned_cols=49  Identities=14%  Similarity=0.128  Sum_probs=0.4

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      .|+++.+++++.+|..+|...++++++|++ +|+|+|+||++|+.+++..
T Consensus       158 ~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~  207 (490)
T 4avf_A          158 KLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKTY  207 (490)
T ss_dssp             -------------------------------------------------C
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhccC
Confidence            599999999999999999999999999998 8999999999999998643

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.55  E-value=3.9e-06  Score=68.83  Aligned_cols=56  Identities=9%  Similarity=0.207  Sum_probs=43.0

Q ss_pred             CCccccCC--CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          20 FEQCHIDP--APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        20 l~~~~id~--sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      ++.+ +.+  .++++.+++++.+|..+|...++++++|++ +|+|+|+||++|+.+++..
T Consensus       175 v~~v-m~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~  233 (514)
T 1jcn_A          175 LSEV-MTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRDY  233 (514)
T ss_dssp             -------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCCC
T ss_pred             HHHH-hCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhhC
Confidence            3445 666  899999999999999999999999999997 8999999999999988754

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=97.46  E-value=1.3e-05  Score=66.43  Aligned_cols=49  Identities=14%  Similarity=0.093  Sum_probs=34.3

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      .|+++.+++++.++..+|...++++++|++ +|+|+|+||++|+.++...
T Consensus       160 ~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~~  209 (496)
T 4fxs_A          160 RLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAESK  209 (496)
T ss_dssp             GCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CCC
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhcc
Confidence            489999999999999999999999999998 7999999999999997653

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=97.44  E-value=5.2e-05  Score=63.91  Aligned_cols=53  Identities=15%  Similarity=0.155  Sum_probs=47.6

Q ss_pred             cC--CCceEEeccCCHHHHHHHHH-HhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          25 ID--PAPFQLVERTSLLKVHSIFS-LVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        25 id--~sP~qv~~~tsL~kv~~LF~-~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      |.  +.+.++.+++|+.++..+|+ ..+.++++|++ +|+++|+||++||.+++...
T Consensus       459 M~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~  515 (632)
T 3org_A          459 MHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHV  515 (632)
T ss_dssp             CBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC
T ss_pred             hhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHH
Confidence            55  56789999999999999999 79999999998 79999999999999987543

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=97.39  E-value=3e-05  Score=66.25  Aligned_cols=52  Identities=21%  Similarity=0.272  Sum_probs=1.4

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC----CeEEEEEehHHHHH
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI----GRLVGVVGLKEVRN   72 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~----GrLVGvVT~kDL~k   72 (105)
                      +++- +...|++|.|+.++..|..|+...++.-++|++.    |+||||||.+|++-
T Consensus       140 ~e~g-~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf  195 (556)
T 4af0_A          140 YENG-FITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQF  195 (556)
T ss_dssp             CCC------------------------------------------------------
T ss_pred             cccC-ccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccccc
Confidence            4444 5577999999999999999999999999999984    69999999999854

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=97.29  E-value=3.6e-05  Score=63.45  Aligned_cols=49  Identities=20%  Similarity=0.161  Sum_probs=0.0

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC----CeEEEEEehHHHHHh
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI----GRLVGVVGLKEVRND   73 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~----GrLVGvVT~kDL~ka   73 (105)
                      +.+.|++|.+++|+.+|..+|...+++++||++.    |+|+|+||.+||+++
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~  155 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID  155 (503)
T ss_dssp             -----------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh
Confidence            4568999999999999999999999999999986    799999999999863

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=97.16  E-value=8.3e-05  Score=63.52  Aligned_cols=51  Identities=14%  Similarity=0.163  Sum_probs=0.0

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      +-+-++++.+.+++.+|..+|...++..++|++ +|+|+|+||.||+.++..
T Consensus       206 MT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~  257 (556)
T 4af0_A          206 MTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQN  257 (556)
T ss_dssp             ----------------------------------------------------
T ss_pred             cccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhh
Confidence            445688999999999999999999999999997 899999999999988653

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=97.15  E-value=7.8e-05  Score=60.90  Aligned_cols=60  Identities=13%  Similarity=0.163  Sum_probs=5.1

Q ss_pred             HHhcCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHH
Q psy6637          12 EEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRN   72 (105)
Q Consensus        12 ~~l~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~k   72 (105)
                      +++.....++.. +...++++.+++++.++..+|...+.++++|++.|+++|+||.+||+.
T Consensus        87 ~~I~~v~~~~~~-m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~~~lvGivt~~Dl~~  146 (486)
T 2cu0_A           87 EQVKRVKRAERL-IVEDVITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKDIAA  146 (486)
T ss_dssp             HHHHHHHTCC---------------------------------------------------
T ss_pred             HHHHhhcchhhc-cccCceEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHhcc
Confidence            344444556665 668899999999999999999999999999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	105
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	1e-04

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 36.6 bits (83), Expect = 1e-04
 Identities = 37/70 (52%), Positives = 53/70 (75%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           ++ E+  +WE+ E    V+FE C ID +PFQLVE TSL K H++FSL+G++ AYVT++G+
Sbjct: 85  LTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGK 144

Query: 61  LVGVVGLKEV 70
           LVGVV L E+
Sbjct: 145 LVGVVALAEI 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	105
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.62
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.33
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.07
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.0
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.99
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.99
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.98
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.96
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.93
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.9
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.9
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.87
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.85
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.85
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.84
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.8
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.79
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	98.79
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.76
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.75
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.73
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.72
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.72
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.71
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.71
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.71
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.69
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.68
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.68
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.66
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	98.59
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.52
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.51
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.48
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	98.44
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.44
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.43
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.41
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.4
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	98.39
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.33
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.31
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.29
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	98.27
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.26
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.16
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	98.12
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	98.08
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.04
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.02
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	97.98
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	97.97
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	85.28

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.62  E-value=8.9e-16  Score=103.60  Aligned_cols=74  Identities=50%  Similarity=0.848  Sum_probs=64.9

Q ss_pred             hHHHHhHHHHHhcCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhcc
Q psy6637           3 PEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus         3 ~~e~~~we~~~l~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~   76 (105)
                      ..+...++.........+....+++.|+++.+++|+.+|..+|...|+++++|+++|||+||||++||.|||++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~g~lvGiIt~~Di~k~I~g  160 (160)
T d2d4za3          87 LEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQAAIEG  160 (160)
T ss_dssp             HHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHC
T ss_pred             cchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEECCEEEEEEEHHHHHHHhCC
Confidence            34455666677776666666669999999999999999999999999999999999999999999999999965

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.2e-12  Score=90.42  Aligned_cols=60  Identities=27%  Similarity=0.459  Sum_probs=54.8

Q ss_pred             cccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccC
Q psy6637          17 KVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        17 ~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~   77 (105)
                      ..++..+ +++.|+++.+++++.+|+.+|...|.++++|+++|+|+||||++||.+++...
T Consensus        99 ~~~v~~i-m~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~g~lvGiIt~~Dil~~l~~~  158 (169)
T d2j9la1          99 TLKLRNI-LDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVLKHIAQM  158 (169)
T ss_dssp             CEECGGG-EESSCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHHH
T ss_pred             ccchhhh-ccCCCEEECCCCcHHHHHHHHHhcCceEEEEEECCEEEEEEEHHHHHHHHHHH
Confidence            3445667 88999999999999999999999999999999999999999999999999654

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.07  E-value=9.2e-11  Score=77.74  Aligned_cols=62  Identities=11%  Similarity=0.269  Sum_probs=53.7

Q ss_pred             HhcCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          13 EMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        13 ~l~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      ..........+ +++.|+++.+++++..|..+|...++++++|++ +|+++|+||+.||.+++.
T Consensus        62 ~~~~~~~v~~~-~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~  124 (127)
T d2ef7a1          62 GKSLETKAEEF-MTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID  124 (127)
T ss_dssp             TCCTTCBGGGT-SEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             hccccchhhhh-hhhhccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHH
Confidence            33344445566 678999999999999999999999999999996 799999999999999985

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.00  E-value=3.2e-10  Score=75.67  Aligned_cols=54  Identities=11%  Similarity=0.075  Sum_probs=49.9

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      ..+ +.+.|+++.+++++.+|..+|...++++++|++ +|||+|+||.+|+.+++.
T Consensus        68 ~~i-m~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~  122 (127)
T d2ouxa2          68 ADI-LNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVID  122 (127)
T ss_dssp             HHH-SBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             hhh-ccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence            345 778999999999999999999999999999996 899999999999999884

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.99  E-value=4.3e-10  Score=76.48  Aligned_cols=58  Identities=19%  Similarity=0.228  Sum_probs=52.5

Q ss_pred             cCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          19 SFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        19 dl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      -+..+ +.+.|+++.+++++..|..+|...++++++|++ +|+|+||||++|+.+++...
T Consensus        66 ~v~~i-m~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~e  124 (144)
T d2yvxa2          66 RVAEI-MNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE  124 (144)
T ss_dssp             BSTTT-SBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHHH
T ss_pred             chHHh-cccCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHHH
Confidence            34555 788999999999999999999999999999997 69999999999999998665

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.99  E-value=4.4e-10  Score=73.97  Aligned_cols=50  Identities=16%  Similarity=0.202  Sum_probs=47.7

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhh
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI   74 (105)
                      +.+.|+++.+++++.+|..+|...++++++|+++|+++|+||+.|+.+++
T Consensus        73 m~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          73 ARDSIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARHL  122 (123)
T ss_dssp             HTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHTC
T ss_pred             eeccceeeeecchHHHHHHHHHHcCceEEEEEECCEEEEEEEHHHHHhhC
Confidence            56788999999999999999999999999999999999999999999976

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.98  E-value=4.6e-10  Score=74.43  Aligned_cols=53  Identities=11%  Similarity=0.206  Sum_probs=49.7

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhh
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI   74 (105)
                      +.+ +++.|.++.+++++..|..+|...++++++|+++|+++|+||.+|+.+++
T Consensus        73 ~~i-m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~GiIt~~Dil~~~  125 (127)
T d2rc3a1          73 KEI-MTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDA  125 (127)
T ss_dssp             GGT-SBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHH
T ss_pred             eee-ccceeEEeccCccHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHHH
Confidence            444 67899999999999999999999999999999999999999999999986

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.96  E-value=7.8e-10  Score=72.63  Aligned_cols=50  Identities=10%  Similarity=0.158  Sum_probs=47.7

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhh
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI   74 (105)
                      +++.|.++.+++++.+|..+|...++++++|+++|+++|+||+.|+.+|.
T Consensus        70 m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          70 MERDLVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAK  119 (120)
T ss_dssp             CBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHHHHHcCCeEEEEEECCEEEEEEEHHHHHhcC
Confidence            56789999999999999999999999999999999999999999999985

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.93  E-value=1.6e-09  Score=72.11  Aligned_cols=54  Identities=19%  Similarity=0.262  Sum_probs=50.2

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhc
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~   75 (105)
                      +.+ +.+.|.++.+++++.+|..+|...++++++|+++|+++|+||.+|+.+++.
T Consensus        73 ~~i-m~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~~~~~vGivt~~Dil~a~~  126 (132)
T d2yzia1          73 ERI-MTRNLITANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASR  126 (132)
T ss_dssp             GGT-CBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred             eec-ccccccccCcchHHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHH
Confidence            445 678899999999999999999999999999999999999999999999873

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.90  E-value=1.2e-09  Score=73.27  Aligned_cols=55  Identities=11%  Similarity=0.029  Sum_probs=50.2

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhcc
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~   76 (105)
                      ..+ +++.|.++.+++++.+|..+|...++++++|+++|+++|+||++|+.+++..
T Consensus        78 ~~i-m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~lvGiit~~Dil~~~~~  132 (139)
T d2o16a3          78 FEV-MHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAIN  132 (139)
T ss_dssp             HHH-SCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHHHHH
T ss_pred             hHh-hccccccccccchHHHHHHHHHHcCceEEEEEECCEEEEEEEHHHHHHHHHH
Confidence            334 5678999999999999999999999999999999999999999999998843

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.90  E-value=1.1e-09  Score=72.24  Aligned_cols=57  Identities=14%  Similarity=0.111  Sum_probs=51.1

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      .+.+ +.+.++++.+++++.+|..+|...++++++|++ +|+++|+||++|+.+++...
T Consensus        76 v~~i-m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~~l  133 (135)
T d3ddja2          76 IIDY-MTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDL  133 (135)
T ss_dssp             GGGT-SEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGGS
T ss_pred             HHHH-hCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHHHh
Confidence            4445 677899999999999999999999999999996 89999999999999998653

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.87  E-value=1.6e-09  Score=72.82  Aligned_cols=50  Identities=10%  Similarity=0.091  Sum_probs=47.0

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      +.+.|+++.+++|+.+|..+|...|+++++|++ +|+++||||++|+.+++
T Consensus       105 m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1         105 MTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             CBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred             cccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHHh
Confidence            567799999999999999999999999999997 89999999999999987

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.85  E-value=3.8e-09  Score=71.53  Aligned_cols=53  Identities=13%  Similarity=0.077  Sum_probs=47.7

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      ....++++.+++++..|..+|...++++++|++ +|+++||||++|+.+++...
T Consensus        82 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~~  135 (153)
T d2ooxe2          82 NFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYD  135 (153)
T ss_dssp             CSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHSC
T ss_pred             ccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHcC
Confidence            346678999999999999999999999999996 89999999999999998544

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.85  E-value=1.9e-09  Score=71.31  Aligned_cols=53  Identities=8%  Similarity=0.073  Sum_probs=49.2

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      +.+.|+++.+++++.+|..+|...|+++++|++ +|+++|+||++|+.+++.+.
T Consensus        79 m~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~~  132 (141)
T d3ddja1          79 MVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHI  132 (141)
T ss_dssp             SBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             hCcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHHH
Confidence            568899999999999999999999999999995 89999999999999998554

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.84  E-value=1.3e-09  Score=71.99  Aligned_cols=50  Identities=8%  Similarity=0.099  Sum_probs=43.3

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      +.+.++++.+++++..|..+|...++++++|++ +|+|+||||++|+.|+.
T Consensus        69 ~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~~  119 (120)
T d1jr1a4          69 KREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKNR  119 (120)
T ss_dssp             BTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHHH
T ss_pred             eccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhcc
Confidence            456789999999999999999999999999996 79999999999999975

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.80  E-value=3.8e-09  Score=71.18  Aligned_cols=57  Identities=18%  Similarity=0.221  Sum_probs=51.4

Q ss_pred             CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      .+.+ ++..|+++.+++++..|..+|...++++++|++ +|+|+|+||++||.+++...
T Consensus        71 v~~i-m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~~~  128 (142)
T d1pvma4          71 IRLV-MRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRA  128 (142)
T ss_dssp             GGGT-SBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCHH
T ss_pred             cccc-cccccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHhhh
Confidence            3455 678899999999999999999999999999997 79999999999999988654

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.79  E-value=8.4e-09  Score=68.06  Aligned_cols=51  Identities=16%  Similarity=0.201  Sum_probs=47.1

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      +...++++.+++++..|..+|...++++++|++ +|+|+|+||++|+.+++.
T Consensus        66 ~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          66 TSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             CCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             eccceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence            456678999999999999999999999999996 799999999999999884

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.79  E-value=8.2e-09  Score=67.90  Aligned_cols=55  Identities=13%  Similarity=0.140  Sum_probs=49.2

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      ..+ +.+.|+++.+++++.+|..+|...++++++|++ +|+++|+||++|+.+++..
T Consensus        63 ~~~-~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~~  118 (122)
T d2yzqa2          63 AML-VKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFA  118 (122)
T ss_dssp             -CC-CBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT
T ss_pred             hhc-cccceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHHh
Confidence            344 678899999999999999999999999999996 7999999999999988744

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.76  E-value=6.5e-09  Score=68.62  Aligned_cols=51  Identities=16%  Similarity=0.268  Sum_probs=46.7

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEee---CCeEEEEEehHHHHHhhccC
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA---IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~---~GrLVGvVT~kDL~kaI~~~   77 (105)
                      ..|++|.+++|+.+|..+|...++++++|++   +|+|+|+||.+|+.++....
T Consensus         5 ~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~   58 (126)
T d1zfja4           5 IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYN   58 (126)
T ss_dssp             SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSS
T ss_pred             eCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccC
Confidence            3589999999999999999999999999997   68999999999999887655

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.75  E-value=1.4e-08  Score=66.42  Aligned_cols=53  Identities=17%  Similarity=0.028  Sum_probs=48.7

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccC
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~   77 (105)
                      +-+.++++.+++|+.+|..+|..-|+++++|+++|+++|+||.+||++++...
T Consensus         6 M~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~~~~~Gvit~~Di~~~l~~~   58 (120)
T d1pbja3           6 MVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEG   58 (120)
T ss_dssp             CBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHHT
T ss_pred             CCCCCeEECCcCcHHHHHHHHHHcCceEEEEEeCCcEEEEEEeeecccccccc
Confidence            44678899999999999999999999999999999999999999999987544

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.73  E-value=6.7e-09  Score=68.93  Aligned_cols=51  Identities=16%  Similarity=0.095  Sum_probs=46.9

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      ..|+++.+++++.+|..+|...++++++|++ +|+++|+||.+|+.+++...
T Consensus        91 ~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3          91 LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             BCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred             CCCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhc
Confidence            4678999999999999999999999999985 89999999999999998543

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.72  E-value=1.4e-08  Score=67.65  Aligned_cols=51  Identities=12%  Similarity=0.070  Sum_probs=47.2

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      +.+.++++.+++++.++..+|...++++++|++ +|+++|+||..||.+++-
T Consensus        90 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          90 YFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             CCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHH
Confidence            457788999999999999999999999999995 899999999999999884

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=1.2e-08  Score=68.00  Aligned_cols=49  Identities=20%  Similarity=0.312  Sum_probs=43.5

Q ss_pred             CCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          26 DPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        26 d~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      ...++++.+++++.+|..+|...++++++|++ +|+++|+||.+|+.+++
T Consensus        88 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l  137 (140)
T d2nyca1          88 FEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI  137 (140)
T ss_dssp             ----CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             ccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHH
Confidence            45678999999999999999999999999995 99999999999999987

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.71  E-value=7.7e-09  Score=69.58  Aligned_cols=51  Identities=12%  Similarity=-0.005  Sum_probs=46.7

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee--CCeEEEEEehHHHHHhhc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA--IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~--~GrLVGvVT~kDL~kaI~   75 (105)
                      +.+.|+++.+++++.+|..+|...|+++++|++  +|+++||||.+|+.|++.
T Consensus       102 ~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~  154 (159)
T d2v8qe2         102 SFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLK  154 (159)
T ss_dssp             SCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHH
T ss_pred             eccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHH
Confidence            446789999999999999999999999999995  699999999999999883

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.71  E-value=1.3e-08  Score=67.46  Aligned_cols=55  Identities=18%  Similarity=0.145  Sum_probs=50.2

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      ... ++..|+++.+++|+.+|..+|..-|+++++|++ +|+++|+||.+|+.+++..
T Consensus         7 ~~~-m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~   62 (145)
T d1o50a3           7 CKL-ISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGF   62 (145)
T ss_dssp             TTS-SCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHH
T ss_pred             HHh-CCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhc
Confidence            345 789999999999999999999999999999997 8999999999999887643

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.71  E-value=1.3e-08  Score=66.70  Aligned_cols=52  Identities=17%  Similarity=0.365  Sum_probs=47.6

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      +.+.++++.+++++.+|..+|...++++++|++ +|+++|+||..||.+++..
T Consensus        72 ~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~~~  124 (131)
T d2riha1          72 IANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI  124 (131)
T ss_dssp             GCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHH
T ss_pred             ccccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence            557788999999999999999999999999995 8999999999999987644

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.69  E-value=2.7e-08  Score=65.64  Aligned_cols=49  Identities=12%  Similarity=0.152  Sum_probs=45.2

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhc
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~   75 (105)
                      ...+++.+++|+.+|..+|...++++++|+++|+++|+||.+|+.+++.
T Consensus        13 ~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~~~~vGiit~~Di~~~~~   61 (127)
T d2rc3a1          13 HTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSY   61 (127)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGG
T ss_pred             CccEEECCcCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEccchhhhhh
Confidence            3568999999999999999999999999999999999999999987653

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.68  E-value=3.1e-08  Score=65.19  Aligned_cols=53  Identities=8%  Similarity=0.179  Sum_probs=49.4

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccC
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~   77 (105)
                      +.+.++++.+++|+.+|..+|...++++++|+++|+++|+||.+|+.+++...
T Consensus        10 m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~~~~~Givt~~dl~~~~~~~   62 (127)
T d2ef7a1          10 MKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKG   62 (127)
T ss_dssp             SBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHTT
T ss_pred             CCCCCeEECCcCcHHHHHHHHHHcCCceEEeecccchhhhcchhHHHHHHHhh
Confidence            56778999999999999999999999999999999999999999999988654

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.68  E-value=2.3e-08  Score=66.31  Aligned_cols=60  Identities=13%  Similarity=0.149  Sum_probs=52.3

Q ss_pred             CcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          16 QKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        16 ~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      +....+.+ +...++++.+++|+.+|..+|...|+++++|++ +|+++|+||.+|+.+++..
T Consensus         3 ~~~pV~~i-m~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~   63 (132)
T d2yzia1           3 MKAPIKVY-MTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV   63 (132)
T ss_dssp             TTSBGGGT-CBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT
T ss_pred             CCCcHHHH-cCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhh
Confidence            33444566 778899999999999999999999999999997 7899999999999887654

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.66  E-value=1.8e-08  Score=67.46  Aligned_cols=59  Identities=24%  Similarity=0.192  Sum_probs=52.3

Q ss_pred             ccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          18 VSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        18 idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      +..+.+ ++..++.+.++||+.+|..+|..-+++++||++ +|+|+|+||..|+.+.....
T Consensus         4 ~~v~~~-m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~   63 (156)
T d2yzqa1           4 VEIEPY-YQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIV   63 (156)
T ss_dssp             CBSTTT-SBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGC
T ss_pred             CCHHHH-hcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhccc
Confidence            445667 888999999999999999999999999999995 89999999999997765544

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=98.59  E-value=5.6e-08  Score=63.56  Aligned_cols=51  Identities=18%  Similarity=0.111  Sum_probs=47.5

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      +...|+++.+++++..|..+|..-++++++|++ +|+++|+||.+|+.+++.
T Consensus        66 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~  117 (121)
T d1vr9a3          66 VSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALI  117 (121)
T ss_dssp             CBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             ccCccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHH
Confidence            567899999999999999999999999999885 899999999999999874

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.52  E-value=6.2e-08  Score=64.56  Aligned_cols=52  Identities=13%  Similarity=0.331  Sum_probs=48.1

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~   76 (105)
                      +.+.|+++.+++|+..|..+|...++++++|++ +|+++|+||.+|+.+++..
T Consensus         8 M~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~   60 (139)
T d2o16a3           8 MTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQES   60 (139)
T ss_dssp             SEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             CcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHh
Confidence            557899999999999999999999999999996 7999999999999988744

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.51  E-value=6.4e-08  Score=63.28  Aligned_cols=50  Identities=10%  Similarity=0.102  Sum_probs=44.8

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      |.+.++++.+++++.+|..+|...++++++|++ +|+++|+||.+|+.+..
T Consensus         7 M~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~   57 (123)
T d1y5ha3           7 MNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKG   57 (123)
T ss_dssp             SEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTT
T ss_pred             cCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhh
Confidence            446688999999999999999999999999996 79999999999986543

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.48  E-value=2e-07  Score=62.47  Aligned_cols=54  Identities=13%  Similarity=0.090  Sum_probs=49.1

Q ss_pred             CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      +.+ |++.+.++.+++|+.+|..+|...+.++++|++ +|+++|+||.+|+.+++.
T Consensus         6 ~di-m~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~   60 (142)
T d1pvma4           6 EKI-MNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFI   60 (142)
T ss_dssp             GGT-SBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTG
T ss_pred             HHh-CCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhh
Confidence            445 788999999999999999999999999999997 699999999999987664

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.44  E-value=3e-07  Score=62.63  Aligned_cols=53  Identities=13%  Similarity=0.082  Sum_probs=47.6

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee------CCeEEEEEehHHHHHhhccC
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA------IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~------~GrLVGvVT~kDL~kaI~~~   77 (105)
                      +.+.++++.+++||.+|..+|...++++++|++      +++++||||++||+|++...
T Consensus       113 ~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~~  171 (179)
T d2ooxe1         113 IPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMN  171 (179)
T ss_dssp             SCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHTT
T ss_pred             cccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHHh
Confidence            456789999999999999999999999999986      35899999999999999655

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.44  E-value=2.3e-07  Score=60.94  Aligned_cols=53  Identities=11%  Similarity=0.115  Sum_probs=48.6

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      |.+.+++|.+++|+.+|..+|...|.++++|++ +|+++|+||.+|+.+++...
T Consensus         8 Mt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~   61 (141)
T d3ddja1           8 MSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKA   61 (141)
T ss_dssp             SBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             CcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhcc
Confidence            567899999999999999999999999999987 78999999999999887543

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.43  E-value=1.4e-07  Score=62.21  Aligned_cols=49  Identities=10%  Similarity=0.024  Sum_probs=43.1

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      +.+.|.++.+++++..+..+|...  ++++|++ +|+++|+||++|+++++.
T Consensus        80 m~~~~~~v~~~~~l~~~~~~~~~~--~~l~Vvd~~~~~~Givt~~dil~~l~  129 (132)
T d1yava3          80 MLTDIPRLHINDPIMKGFGMVINN--GFVCVENDEQVFEGIFTRRVVLKELN  129 (132)
T ss_dssp             SBCSCCEEETTSBHHHHHHHTTTC--SEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             ccccccccccchhHHHHHHHHHhC--CEEEEEccCCEEEEEEEHHHHHHHHH
Confidence            567899999999999999999765  4588886 799999999999999983

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.41  E-value=3e-07  Score=60.47  Aligned_cols=49  Identities=16%  Similarity=0.106  Sum_probs=45.1

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      -+.+.+++|+.+|..+|+..|+++++|++ +|+++|+||.+|+.+++...
T Consensus        14 v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~   63 (132)
T d1yava3          14 VAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGL   63 (132)
T ss_dssp             SCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCS
T ss_pred             eEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhcc
Confidence            37899999999999999999999999996 69999999999999998654

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=3.6e-07  Score=60.47  Aligned_cols=53  Identities=13%  Similarity=0.029  Sum_probs=48.2

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      .....+++.+++|+.+|..+|...++++++|++ .|+++|+||.+|+.+++...
T Consensus        15 ~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~   68 (140)
T d2nyca1          15 TQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGG   68 (140)
T ss_dssp             BCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC
T ss_pred             cCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhc
Confidence            446678999999999999999999999999998 88999999999999988655

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=98.39  E-value=2.7e-07  Score=60.19  Aligned_cols=53  Identities=15%  Similarity=0.098  Sum_probs=47.7

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      |.+.+.++.+++|+.+|..+|...+.++++|++ +|+++|+||.+|+.++....
T Consensus         7 m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~~~~~   60 (121)
T d1vr9a3           7 VTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDS   60 (121)
T ss_dssp             CBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCTTS
T ss_pred             hcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhhhccc
Confidence            667788999999999999999999999999996 89999999999998765443

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.33  E-value=7.9e-09  Score=68.10  Aligned_cols=51  Identities=18%  Similarity=0.201  Sum_probs=16.2

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEee----CCeEEEEEehHHHHHhhccC
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA----IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~----~GrLVGvVT~kDL~kaI~~~   77 (105)
                      ..|+++.+++|+..|..+|...|+++++|++    .|+|+||||.+|++.+....
T Consensus         4 ~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~   58 (120)
T d1jr1a4           4 TDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEE   58 (120)
T ss_dssp             CTTCC----CCCC--CCBC---------------CTTCCC---------------
T ss_pred             cCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccc
Confidence            5689999999999999999999999999996    58999999999997665444

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.31  E-value=7.5e-07  Score=58.03  Aligned_cols=53  Identities=21%  Similarity=0.229  Sum_probs=48.9

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEe---eCCeEEEEEehHHHHHhhccC
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVT---AIGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt---~~GrLVGvVT~kDL~kaI~~~   77 (105)
                      +...|+++.+++|+.+|..+|..-++.+++|+   ..|+++|++|..|+.+++...
T Consensus         7 m~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~   62 (131)
T d2riha1           7 LKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR   62 (131)
T ss_dssp             CCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT
T ss_pred             ccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccc
Confidence            66889999999999999999999999999999   369999999999999988665

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.29  E-value=6.9e-07  Score=60.03  Aligned_cols=51  Identities=12%  Similarity=0.051  Sum_probs=46.6

Q ss_pred             CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      ..++++.+++|+.+|..+|...++++++|++ +|+++|+||.+|+.+++...
T Consensus        12 ~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~   63 (153)
T d2ooxe2          12 SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDG   63 (153)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGG
T ss_pred             CCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccc
Confidence            4588999999999999999999999999996 79999999999999887543

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.27  E-value=1.3e-07  Score=61.88  Aligned_cols=53  Identities=17%  Similarity=0.256  Sum_probs=31.0

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      |-+.|+++.+++|+.+|..+|...+++++||++ +|+++|+||.+|+.++....
T Consensus         7 M~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~~~~   60 (122)
T d2yzqa2           7 MTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEE   60 (122)
T ss_dssp             SEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC-------
T ss_pred             cCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhhhccc
Confidence            346789999999999999999999999999996 79999999999998765443

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.26  E-value=8e-07  Score=58.79  Aligned_cols=50  Identities=20%  Similarity=0.104  Sum_probs=46.5

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      .++++.+++|+.+|..+|...++++++|++ +|+++|+||.+|+++++...
T Consensus        21 ~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~   71 (145)
T d2v8qe1          21 NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEK   71 (145)
T ss_dssp             SCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSS
T ss_pred             CceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcc
Confidence            478999999999999999999999999998 88999999999999888655

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.16  E-value=1e-06  Score=58.07  Aligned_cols=60  Identities=7%  Similarity=0.065  Sum_probs=52.0

Q ss_pred             cccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee---CCeEEEEEehHHHHHhhccC
Q psy6637          17 KVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA---IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        17 ~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~---~GrLVGvVT~kDL~kaI~~~   77 (105)
                      .+--+.+ |.+.+++|.+++|+.+|..+|...++++++|++   .|.++|++|..|+.+++...
T Consensus        10 ~~~V~di-M~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~   72 (160)
T d2d4za3          10 NIQVGDI-MVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRR   72 (160)
T ss_dssp             SCBTTSS-SBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHH
T ss_pred             ceEHHHh-cCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhc
Confidence            3444556 568899999999999999999999999999996   47999999999999988654

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.12  E-value=2.7e-06  Score=57.68  Aligned_cols=48  Identities=10%  Similarity=0.082  Sum_probs=44.2

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee--CCeEEEEEehHHHHHhhc
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA--IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~--~GrLVGvVT~kDL~kaI~   75 (105)
                      ..+++.+++|+.+|..+|...|+++++|++  .|++||+||.+|+.+++.
T Consensus        31 ~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~   80 (179)
T d2ooxe1          31 RLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIK   80 (179)
T ss_dssp             EEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHH
T ss_pred             cEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHH
Confidence            469999999999999999999999999997  489999999999988764

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.08  E-value=3.5e-06  Score=55.44  Aligned_cols=53  Identities=15%  Similarity=0.264  Sum_probs=46.4

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhC-----CcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVG-----VNHAYVTA-IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lg-----lr~l~Vt~-~GrLVGvVT~kDL~kaI~~~   77 (105)
                      |++.++++.+++|+.+|..+|+..+     ++++||++ +|+++|+|+.+++..+-...
T Consensus         7 M~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~~~~~   65 (127)
T d2ouxa2           7 MTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVNDDDT   65 (127)
T ss_dssp             CBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSCTTS
T ss_pred             CCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeeccccccccE
Confidence            6788999999999999999998885     78999997 89999999999997664433

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.04  E-value=2.4e-06  Score=55.64  Aligned_cols=52  Identities=12%  Similarity=0.146  Sum_probs=46.9

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccC
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~   77 (105)
                      +.+.|.++.+++|+.+|..+|..-|+++++|++ ++++|++|..|+.+++...
T Consensus         7 M~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d-~~lvg~~~~~~~~~~~~~~   58 (135)
T d3ddja2           7 MIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN-EKIEGLLTTRDLLSTVESY   58 (135)
T ss_dssp             CEESCCEECTTSBHHHHHHHTTGGGCCEEEEES-SSEEEEEEHHHHHGGGTTC
T ss_pred             eeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEe-cceeceeeccchhhhhccc
Confidence            557899999999999999999999999999986 5899999999999887533

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.02  E-value=5e-07  Score=60.86  Aligned_cols=51  Identities=22%  Similarity=0.341  Sum_probs=45.6

Q ss_pred             cCCCceEEeccCCHHHHHHHHHHhC-----CcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637          25 IDPAPFQLVERTSLLKVHSIFSLVG-----VNHAYVTA-IGRLVGVVGLKEVRNDSH   75 (105)
Q Consensus        25 id~sP~qv~~~tsL~kv~~LF~~Lg-----lr~l~Vt~-~GrLVGvVT~kDL~kaI~   75 (105)
                      |.+.|+++.+++|+.+|..+|+..+     ++.+||++ +|+|+|+|+.+|+.++..
T Consensus         7 M~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~~~   63 (144)
T d2yvxa2           7 MTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVADP   63 (144)
T ss_dssp             CBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTSCT
T ss_pred             cCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhccc
Confidence            7889999999999999999998875     78899997 799999999999977643

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=6.8e-06  Score=55.65  Aligned_cols=48  Identities=19%  Similarity=0.104  Sum_probs=42.3

Q ss_pred             ceEEeccCCHHHHHHHHHHhCCcEEEEe---eCCeEEEEEehHHHHHhhcc
Q psy6637          29 PFQLVERTSLLKVHSIFSLVGVNHAYVT---AIGRLVGVVGLKEVRNDSHL   76 (105)
Q Consensus        29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt---~~GrLVGvVT~kDL~kaI~~   76 (105)
                      .+++.+.+|+.+|..+|...+++++||.   ++|+|+|+||.+||.+++..
T Consensus        19 ~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~   69 (169)
T d2j9la1          19 TVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIEN   69 (169)
T ss_dssp             CCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHH
T ss_pred             EEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhc
Confidence            4556678899999999999999999998   26899999999999998853

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.97  E-value=1.1e-05  Score=53.55  Aligned_cols=50  Identities=16%  Similarity=0.078  Sum_probs=44.9

Q ss_pred             CceEEeccCCHHHHHHHHHHhCCcEEEEee--CCeEEEEEehHHHHHhhccC
Q psy6637          28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA--IGRLVGVVGLKEVRNDSHLS   77 (105)
Q Consensus        28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~--~GrLVGvVT~kDL~kaI~~~   77 (105)
                      ..+.+..++|+.+|..+|...|+++++|++  .|+++|+||.+|+.+++...
T Consensus        24 ~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~   75 (159)
T d2v8qe2          24 KLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRY   75 (159)
T ss_dssp             EEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHH
T ss_pred             ceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            357899999999999999999999999985  69999999999998887554

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=85.28  E-value=0.0027  Score=43.58  Aligned_cols=49  Identities=18%  Similarity=0.076  Sum_probs=42.0

Q ss_pred             CCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637          26 DPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS   74 (105)
Q Consensus        26 d~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI   74 (105)
                      +.....+...++-..+..+|+.++.+.++|++ .|+++|.||..|+.+|-
T Consensus       144 ~~~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die~A~  193 (213)
T d1lkvx_         144 TRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEAQ  193 (213)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHHHHH
T ss_pred             hhhheeehhcCCHHHHHHHHHhCCHHHHHHHHHhhhhcCCCcHHHHHHHH
Confidence            34456677888999999999999999999996 89999999999986553