Psyllid ID: psy6708

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MALSLSLVASLIYILSYGSEDTTTNTTSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPRVDKTFDT
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEcccHHHHHHHHHcccccccEEEEEcccccccccccccccccccccccccccEEcEEcccccccccccEEccccccccccHHHHHHHHHHccccccccccccccccccccHHHHHHcccccccccccccccccccEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHccccccEEEEcccHHHHHHHHHHccccccEEEEEEcccccccccHHHHHHHHHccccccccEEccccccHHHcccccccccccccEEcccHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccccccccccccccccEEEEccccccccccc
Coil and Loop (DISEMBL)
MALSLSLVASLIYILSygsedtttnttsvphtpqdpdqwpqefDFIIVGAGTAGSILASRLAEVRSWNILLVEaggdpsnisyfpenrgqlygssmdwAFVTEEQSgmflslsnqrttipcgkglggsssihslyytrgdsrdydewgydafkfdnvLKYFKksefmtdsskynefhgtqgpfvvkpsprvdktfdt
Flexible Loop (DISEMBL)
MALSLSLVASLIYILSYGSEDTTTNTTSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEaggdpsnisYFPENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRTTIpcgkglggssSIHSLYYTRGDSRDYDEWGYDAFKFDNVLKYFKKSEFMTDSSKYNefhgtqgpfvvkpsprvdktfdt
Low Complexity Region (SEG)
MALSLSLVASLIYILSYGSEDtttnttSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPRVDKTFDT
Disordered region (IsUnstruct)
***************************************PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDAFKFDNVLKYFKKSEFMT*****************************
Disordered Region (DISOPRED)
*ALSLSLVASLIYILSYGSEDTTTNT***********QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPR*******
Disordered Region (DISEMBL)
MALSLSLVASLIYILSYGSED**************PDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSP********
Disordered Region (DISPRO)
MALSLSLVASLIYILSYGSEDTTTNTTSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPRVDK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALSLSLVASLIYILSYGSEDTTTNTTSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPRVDKTFDT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	197	2.2.26 [Sep-21-2011]
P18173	625	Glucose dehydrogenase [ac	no	N/A	0.751	0.236	0.401	2e-24
P18172	625	Glucose dehydrogenase [ac	no	N/A	0.629	0.198	0.433	2e-23
B2JS89	572	Choline dehydrogenase OS=	yes	N/A	0.736	0.253	0.372	1e-21
Q66D54	567	Choline dehydrogenase OS=	yes	N/A	0.715	0.248	0.367	3e-21
B2K8U4	567	Choline dehydrogenase OS=	yes	N/A	0.715	0.248	0.367	3e-21
Q8P5D7	556	Choline dehydrogenase OS=	yes	N/A	0.725	0.257	0.369	4e-21
B0RNU9	556	Choline dehydrogenase OS=	yes	N/A	0.725	0.257	0.369	4e-21
Q4UYN5	556	Choline dehydrogenase OS=	yes	N/A	0.725	0.257	0.369	4e-21
Q9L4K0	558	Choline dehydrogenase OS=	yes	N/A	0.670	0.236	0.398	4e-21
B4EX94	555	Choline dehydrogenase OS=	yes	N/A	0.664	0.236	0.382	9e-21

>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld PE=3 SV=3

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/152 (40%), Positives = 88/152 (57%), Gaps = 4/152 (2%)

Query: 42  EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFV 101
           E+DFI++G G+AGS++ASRL+EV  W +LL+EAGGD    +  P       GS +D+ + 
Sbjct: 64  EYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYN 123

Query: 102 TEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYD---AFKFDNVL 158
           TE +    LS   QR   P GK LGG+S ++ + Y RG+  DYD+W  D    + +++VL
Sbjct: 124 TEPEPMACLSSMEQRCYWPRGKVLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYNDVL 183

Query: 159 KYFKKSEFMTDSSKY-NEFHGTQGPFVVKPSP 189
            +FKKSE   D  +   E+H   G   V   P
Sbjct: 184 PFFKKSEDNLDLDEVGTEYHAKGGLLPVGKFP 215

Essential for cuticular modification during development.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 1EC: 0

>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura pseudoobscura GN=Gld PE=3 SV=4

 Score =  108 bits (270), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/127 (43%), Positives = 79/127 (62%), Gaps = 3/127 (2%)

Query: 42  EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFV 101
           E+DFI++G G+AGS++ASRL+EV  W +LL+EAGGD    +  P       GS +D+ + 
Sbjct: 64  EYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYN 123

Query: 102 TEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---GYDAFKFDNVL 158
           TE +    LS   QR   P GK LGG+S ++ + Y RG+  DYD+W   G   + + +VL
Sbjct: 124 TEPERMACLSSMEQRCYWPRGKVLGGTSVMNGMMYIRGNREDYDDWAAQGNPGWSYQDVL 183

Query: 159 KYFKKSE 165
            +FKKSE
Sbjct: 184 PFFKKSE 190

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: 0

>sp|B2JS89|BETA_BURP8 Choline dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=betA PE=3 SV=1

 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 98/172 (56%), Gaps = 27/172 (15%)

Query: 41  QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD----------PSNISYFPENRGQ 90
           +E+D+II+GAG+AG++LA+RL E R   +LL+EAGG           P+ ++Y       
Sbjct: 4   KEYDYIIIGAGSAGNVLATRLTEDRDVTVLLLEAGGPDYRFDFRTQMPAALAY------P 57

Query: 91  LYGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW--- 147
           L G   +WA+ T+ +  M    +N+R     GKGLGGSS I+ + Y RG++ DYD W   
Sbjct: 58  LQGRRYNWAYETDPEPFM----NNRRMECGRGKGLGGSSLINGMCYIRGNALDYDGWAER 113

Query: 148 -GYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPR-VDKTFDT 197
            G + + + + L YF+K+E  T  +  N++HG  GP  V  S R V+  F+ 
Sbjct: 114 KGLENWTYLDCLPYFRKAE--TRDAGANDYHGGDGPVHVTTSKRGVNPLFEA 163

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Burkholderia phymatum (strain DSM 17167 / STM815) (taxid: 391038)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q66D54|BETA_YERPS Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=betA PE=3 SV=1

 Score =  101 bits (252), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 94/166 (56%), Gaps = 25/166 (15%)

Query: 42  EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISY---------FPENRGQLY 92
           E+D+II+GAG+AG++LA+RL E     +LL+EAGG    + +         FP     L 
Sbjct: 2   EYDYIIIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFP-----LQ 56

Query: 93  GSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----G 148
           G   +WA+ T+ +  M    +N+R     GKGLGGSS I+ + Y RG++ D+D W    G
Sbjct: 57  GKRYNWAYETDPEPHM----NNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHWASLSG 112

Query: 149 YDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPRVDKT 194
            + + + + L YF+K+E  T     N+FHG +GP  V  +P++D  
Sbjct: 113 LEDWSYLDCLPYFRKAE--TRDVGPNDFHGGEGPVSVT-TPKIDNN 155

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Yersinia pseudotuberculosis (taxid: 633)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|B2K8U4|BETA_YERPB Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=betA PE=3 SV=1

 Score =  101 bits (252), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 94/166 (56%), Gaps = 25/166 (15%)

Query: 42  EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISY---------FPENRGQLY 92
           E+D+II+GAG+AG++LA+RL E     +LL+EAGG    + +         FP     L 
Sbjct: 2   EYDYIIIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFP-----LQ 56

Query: 93  GSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----G 148
           G   +WA+ T+ +  M    +N+R     GKGLGGSS I+ + Y RG++ D+D W    G
Sbjct: 57  GKRYNWAYETDPEPHM----NNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHWASLSG 112

Query: 149 YDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPRVDKT 194
            + + + + L YF+K+E  T     N+FHG +GP  V  +P++D  
Sbjct: 113 LEDWSYLDCLPYFRKAE--TRDVGPNDFHGGEGPVSVT-TPKIDNN 155

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Yersinia pseudotuberculosis serotype IB (strain PB1/+) (taxid: 502801)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q8P5D7|BETA_XANCP Choline dehydrogenase OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN=betA PE=3 SV=1

 Score =  101 bits (251), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 95/168 (56%), Gaps = 25/168 (14%)

Query: 41  QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISY---------FPENRGQL 91
           +E+D+II+GAG+AG++LA+RL E    ++LL+EAGG    + +         FP     L
Sbjct: 3   REYDYIIIGAGSAGNVLAARLTEDPGVSVLLLEAGGPDYRLDFRTQMPAALAFP-----L 57

Query: 92  YGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---- 147
            G   +WA+ TE +  M     N+R     GKGLGGSS I+ + Y RG++ D+D W    
Sbjct: 58  QGRRYNWAYETEPEPHM----DNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRP 113

Query: 148 GYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPRVDKTF 195
           G + + + +VL YF+K+E  T     N++HG +GP  V  +P+ D   
Sbjct: 114 GLEDWGYRDVLPYFRKAE--TRDIGANDYHGGEGPVSVA-TPKNDNNV 158

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) (taxid: 190485)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|B0RNU9|BETA_XANCB Choline dehydrogenase OS=Xanthomonas campestris pv. campestris (strain B100) GN=betA PE=3 SV=1

 Score =  101 bits (251), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 95/168 (56%), Gaps = 25/168 (14%)

Query: 41  QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISY---------FPENRGQL 91
           +E+D+II+GAG+AG++LA+RL E    ++LL+EAGG    + +         FP     L
Sbjct: 3   REYDYIIIGAGSAGNVLAARLTEDPGVSVLLLEAGGPDYRLDFRTQMPAALAFP-----L 57

Query: 92  YGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---- 147
            G   +WA+ TE +  M     N+R     GKGLGGSS I+ + Y RG++ D+D W    
Sbjct: 58  QGRRYNWAYETEPEPHM----DNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRP 113

Query: 148 GYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPRVDKTF 195
           G + + + +VL YF+K+E  T     N++HG +GP  V  +P+ D   
Sbjct: 114 GLEDWGYRDVLPYFRKAE--TRDIGANDYHGGEGPVSVA-TPKNDNNV 158

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Xanthomonas campestris pv. campestris (strain B100) (taxid: 509169)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q4UYN5|BETA_XANC8 Choline dehydrogenase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=betA PE=3 SV=1

 Score =  101 bits (251), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 95/168 (56%), Gaps = 25/168 (14%)

Query: 41  QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISY---------FPENRGQL 91
           +E+D+II+GAG+AG++LA+RL E    ++LL+EAGG    + +         FP     L
Sbjct: 3   REYDYIIIGAGSAGNVLAARLTEDPGVSVLLLEAGGPDYRLDFRTQMPAALAFP-----L 57

Query: 92  YGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---- 147
            G   +WA+ TE +  M     N+R     GKGLGGSS I+ + Y RG++ D+D W    
Sbjct: 58  QGRRYNWAYETEPEPHM----DNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRP 113

Query: 148 GYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPRVDKTF 195
           G + + + +VL YF+K+E  T     N++HG +GP  V  +P+ D   
Sbjct: 114 GLEDWGYRDVLPYFRKAE--TRDIGANDYHGGEGPVSVA-TPKNDNNV 158

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Xanthomonas campestris pv. campestris (strain 8004) (taxid: 314565)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q9L4K0|BETA2_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=1 SV=1

 Score =  101 bits (251), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 89/158 (56%), Gaps = 26/158 (16%)

Query: 42  EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD----------PSNISYFPENRGQL 91
           EFD+II+GAG+AG++LA+RL E    ++LL+EAGG           P+ ++Y       L
Sbjct: 6   EFDYIIIGAGSAGNVLATRLTEDSDVSVLLLEAGGPDYRFDFRTQMPAALAY------PL 59

Query: 92  YGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---- 147
            G   +WAF T+ +  M     N+R     GKGLGGSS I+ + Y RG++ DYD W    
Sbjct: 60  QGKRYNWAFETDPEPHM----DNRRMECGRGKGLGGSSLINGMCYIRGNALDYDHWAKQP 115

Query: 148 GYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVV 185
           G + + + + L YFKKSE  T     N++HG  GP  V
Sbjct: 116 GLEEWDYLSCLPYFKKSE--TRDIGPNDYHGGDGPVSV 151

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) (taxid: 290398)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|B4EX94|BETA_PROMH Choline dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=betA PE=3 SV=1

 Score =  100 bits (248), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 89/157 (56%), Gaps = 26/157 (16%)

Query: 43  FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD----------PSNISYFPENRGQLY 92
           +D+II+GAG+AG++LA+RL E     +LL+EAGG           P+ ++Y       L 
Sbjct: 3   YDYIIIGAGSAGNVLATRLTEDPDVTVLLLEAGGPDYRFDFRTQMPAALAY------PLQ 56

Query: 93  GSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----G 148
           G   +WA+ TE +  M    +N+R     GKGLGGSS I+ + Y RG++ D+DEW    G
Sbjct: 57  GRRYNWAYETEPEPHM----NNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDEWAKLPG 112

Query: 149 YDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVV 185
            + + + N L YF+K+E  T     N++HG  GP  V
Sbjct: 113 LEDWNYLNCLPYFRKAE--TRDIGANDYHGDSGPVSV 147

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Proteus mirabilis (strain HI4320) (taxid: 529507)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
194767914	651	GF19432 [Drosophila ananassae] gi|190622	0.751	0.227	0.445	2e-29
24642042	703	CG9518 [Drosophila melanogaster] gi|7293	0.741	0.207	0.441	3e-29
33636589	703	RE11240p [Drosophila melanogaster]	0.741	0.207	0.441	4e-29
195432695	658	GK19744 [Drosophila willistoni] gi|19416	0.761	0.227	0.445	5e-29
195354593	601	GM12028 [Drosophila sechellia] gi|194129	0.741	0.242	0.435	1e-28
195130098	681	GI15381 [Drosophila mojavensis] gi|19390	0.761	0.220	0.438	2e-28
195174259	551	GL27090 [Drosophila persimilis] gi|19411	0.741	0.264	0.435	3e-28
242018484	656	Alcohol oxidase, putative [Pediculus hum	0.634	0.190	0.472	3e-28
198471152	691	GA21849 [Drosophila pseudoobscura pseudo	0.741	0.211	0.435	3e-28
195043459	681	GH11960 [Drosophila grimshawi] gi|193901	0.741	0.214	0.421	6e-28

>gi|194767914|ref|XP_001966059.1| GF19432 [Drosophila ananassae] gi|190622944|gb|EDV38468.1| GF19432 [Drosophila ananassae]

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/157 (44%), Positives = 98/157 (62%), Gaps = 9/157 (5%)

Query: 39  WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDW 98
           WP E+DFI+VG+G+AG+++A+RL+EVR W +LL+EAG D + IS  P     L  S +DW
Sbjct: 54  WP-EYDFIVVGSGSAGAVVANRLSEVRKWKVLLIEAGPDENEISDVPSLAAYLQLSKLDW 112

Query: 99  AFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---GYDAFKFD 155
           A+ TE  +   L + N R   P G+ LGGSS ++ + Y RG+  DYD W   G   + +D
Sbjct: 113 AYKTEPSTKACLGMQNNRCNWPRGRVLGGSSVLNYMLYVRGNRNDYDHWASLGNPGWDYD 172

Query: 156 NVLKYFKKSEFMTDSSKY---NEFHGTQGPFVVKPSP 189
           +VLKYFKKSE   + + Y   N +HG  G   V+ SP
Sbjct: 173 HVLKYFKKSE--DNRNPYLANNAYHGKGGLLTVQESP 207

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24642042|ref|NP_572979.1| CG9518 [Drosophila melanogaster] gi|7293011|gb|AAF48398.1| CG9518 [Drosophila melanogaster] gi|221307618|gb|ACM16685.1| FI02019p [Drosophila melanogaster]

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 97/154 (62%), Gaps = 8/154 (5%)

Query: 42  EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFV 101
           E+DFI+VG+G+AG+++A+RL+EVR W +LL+EAG D + IS  P     L  S +DWA+ 
Sbjct: 56  EYDFIVVGSGSAGAVVANRLSEVRKWKVLLIEAGPDENEISDVPSLAAYLQLSKLDWAYK 115

Query: 102 TEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---GYDAFKFDNVL 158
           TE  +   L + N R   P G+ LGGSS ++ + Y RG+  DYD W   G   + +DNVL
Sbjct: 116 TEPSTKACLGMQNNRCNWPRGRVLGGSSVLNYMLYVRGNRHDYDHWASLGNPGWDYDNVL 175

Query: 159 KYFKKSEFMTDSSKY---NEFHGTQGPFVVKPSP 189
           +YFKKSE   + + Y   N++HG  G   V+ SP
Sbjct: 176 RYFKKSE--DNRNPYLANNKYHGRGGLLTVQESP 207

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|33636589|gb|AAQ23592.1| RE11240p [Drosophila melanogaster]

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 97/154 (62%), Gaps = 8/154 (5%)

Query: 42  EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFV 101
           E+DFI+VG+G+AG+++A+RL+EVR W +LL+EAG D + IS  P     L  S +DWA+ 
Sbjct: 56  EYDFIVVGSGSAGAVVANRLSEVRKWKVLLIEAGPDENEISDVPSLAAYLQLSKLDWAYK 115

Query: 102 TEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---GYDAFKFDNVL 158
           TE  +   L + N R   P G+ LGGSS ++ + Y RG+  DYD W   G   + +DNVL
Sbjct: 116 TEPSTKACLGMQNNRCNWPRGRVLGGSSVLNYMLYVRGNRHDYDHWASLGNPGWDYDNVL 175

Query: 159 KYFKKSEFMTDSSKY---NEFHGTQGPFVVKPSP 189
           +YFKKSE   + + Y   N++HG  G   V+ SP
Sbjct: 176 RYFKKSE--DNRNPYLANNKYHGRGGLLTVQESP 207

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195432695|ref|XP_002064352.1| GK19744 [Drosophila willistoni] gi|194160437|gb|EDW75338.1| GK19744 [Drosophila willistoni]

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 69/155 (44%), Positives = 96/155 (61%), Gaps = 5/155 (3%)

Query: 39  WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDW 98
           WP E+DFI+VG+G+AG+++A+RL+EVR W +LL+EAG D + IS  P     L  S +DW
Sbjct: 54  WP-EYDFIVVGSGSAGAVVANRLSEVRKWKVLLIEAGPDENEISDVPSLAAYLQLSKLDW 112

Query: 99  AFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---GYDAFKFD 155
           A+ TE  +   L + N R   P G+ LGGSS ++ + Y RG+  DYD W   G   + FD
Sbjct: 113 AYKTEPSNKACLGMQNNRCNWPRGRVLGGSSVLNYMLYVRGNRHDYDHWAELGNTGWGFD 172

Query: 156 NVLKYFKKSEFMTDS-SKYNEFHGTQGPFVVKPSP 189
           NVL YFKKSE   +    ++ +HG  G   V+ SP
Sbjct: 173 NVLHYFKKSEDNRNPYLAHSPYHGRGGLLTVQESP 207

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195354593|ref|XP_002043781.1| GM12028 [Drosophila sechellia] gi|194129007|gb|EDW51050.1| GM12028 [Drosophila sechellia]

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 97/154 (62%), Gaps = 8/154 (5%)

Query: 42  EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFV 101
           E+DFI+VG+G+AG+++A+RL+EVR W +LL+EAG D + IS  P     L  S +DWA+ 
Sbjct: 56  EYDFIVVGSGSAGAVVANRLSEVRKWKVLLIEAGPDENEISDVPSLAAYLQLSKLDWAYK 115

Query: 102 TEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---GYDAFKFDNVL 158
           TE  +   L + N R   P G+ LGGSS ++ + Y RG+  DYD W   G   + +D+VL
Sbjct: 116 TEPSTKACLGMQNNRCNWPRGRVLGGSSVLNYMLYVRGNRHDYDHWASLGNPGWDYDHVL 175

Query: 159 KYFKKSEFMTDSSKY---NEFHGTQGPFVVKPSP 189
           +YFKKSE   + + Y   N++HG  G   V+ SP
Sbjct: 176 RYFKKSE--DNRNPYLANNKYHGRGGLLTVQESP 207

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195130098|ref|XP_002009491.1| GI15381 [Drosophila mojavensis] gi|193907941|gb|EDW06808.1| GI15381 [Drosophila mojavensis]

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/155 (43%), Positives = 95/155 (61%), Gaps = 5/155 (3%)

Query: 39  WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDW 98
           WP E+DFI+VG+G+AG+++A+RL+EVR W +LL+EAG D + IS  P     L  S +DW
Sbjct: 54  WP-EYDFIVVGSGSAGAVVANRLSEVRKWKVLLIEAGPDENEISDVPSLAAYLQLSKLDW 112

Query: 99  AFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---GYDAFKFD 155
           A+ TE  +   L + N R   P G+ LGGSS ++ + Y RG+  DYD W   G   + ++
Sbjct: 113 AYKTEPSTKACLGMQNNRCNWPRGRVLGGSSVLNYMLYVRGNRHDYDHWAALGNPGWDYE 172

Query: 156 NVLKYFKKSEFMTDSSKYNE-FHGTQGPFVVKPSP 189
           NVL YFKKSE   +    N  +HG  G   V+ SP
Sbjct: 173 NVLHYFKKSEDNRNPYLSNSPYHGRGGLLTVQESP 207

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195174259|ref|XP_002027896.1| GL27090 [Drosophila persimilis] gi|194115585|gb|EDW37628.1| GL27090 [Drosophila persimilis]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 95/154 (61%), Gaps = 8/154 (5%)

Query: 42  EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFV 101
           E+DFI+VG+G+AG+++A+RL+EVR W +LL+EAG D + IS  P     L  S +DWA+ 
Sbjct: 56  EYDFIVVGSGSAGAVVANRLSEVRKWKVLLIEAGPDENEISDVPSLAAYLQLSKLDWAYK 115

Query: 102 TEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---GYDAFKFDNVL 158
           TE  +   L + N R   P G+ LGGSS ++ + Y RG+  DYD W   G   + +D VL
Sbjct: 116 TEPSNKACLGMQNNRCNWPRGRVLGGSSVLNYMLYVRGNRNDYDHWASLGNTGWDYDQVL 175

Query: 159 KYFKKSEFMTDSSKY---NEFHGTQGPFVVKPSP 189
           +YFKKSE   + + Y   N +HG  G   V+ SP
Sbjct: 176 RYFKKSE--DNRNPYLANNAYHGRGGLLTVQESP 207

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018484|ref|XP_002429705.1| Alcohol oxidase, putative [Pediculus humanus corporis] gi|212514708|gb|EEB16967.1| Alcohol oxidase, putative [Pediculus humanus corporis]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 61/129 (47%), Positives = 93/129 (72%), Gaps = 4/129 (3%)

Query: 41  QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAF 100
           +EFDFII+GAG++GS++A+RL+E  +W IL++EAGGDPS  S  P      +G+ +DW F
Sbjct: 58  EEFDFIIIGAGSSGSVVANRLSENSNWKILILEAGGDPSFTSDVPGLLFSTHGTEIDWKF 117

Query: 101 VTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKFDN 156
           ++E+  G  L + +++   P G+ LGGSSSI+++ Y RG+ +DY++W    G D + ++N
Sbjct: 118 LSEKHEGSCLGMIDEKCAYPRGRVLGGSSSINAMLYVRGNPQDYNDWRDEVGNDDWDYEN 177

Query: 157 VLKYFKKSE 165
           VLKYFKKSE
Sbjct: 178 VLKYFKKSE 186

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198471152|ref|XP_001355514.2| GA21849 [Drosophila pseudoobscura pseudoobscura] gi|198145790|gb|EAL32573.2| GA21849 [Drosophila pseudoobscura pseudoobscura]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 95/154 (61%), Gaps = 8/154 (5%)

Query: 42  EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFV 101
           E+DFI+VG+G+AG+++A+RL+EVR W +LL+EAG D + IS  P     L  S +DWA+ 
Sbjct: 56  EYDFIVVGSGSAGAVVANRLSEVRKWKVLLIEAGPDENEISDVPSLAAYLQLSKLDWAYK 115

Query: 102 TEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---GYDAFKFDNVL 158
           TE  +   L + N R   P G+ LGGSS ++ + Y RG+  DYD W   G   + +D VL
Sbjct: 116 TEPSNKACLGMQNNRCNWPRGRVLGGSSVLNYMLYVRGNRNDYDHWASLGNTGWDYDQVL 175

Query: 159 KYFKKSEFMTDSSKY---NEFHGTQGPFVVKPSP 189
           +YFKKSE   + + Y   N +HG  G   V+ SP
Sbjct: 176 RYFKKSE--DNRNPYLANNAYHGRGGLLTVQESP 207

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195043459|ref|XP_001991622.1| GH11960 [Drosophila grimshawi] gi|193901380|gb|EDW00247.1| GH11960 [Drosophila grimshawi]

 Score =  129 bits (325), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 97/159 (61%), Gaps = 13/159 (8%)

Query: 39  WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDW 98
           WP E+DFI+VG+G+AG+++A+RL+EVR W +LL+EAG D + IS  P     L  S +DW
Sbjct: 54  WP-EYDFIVVGSGSAGAVVANRLSEVRKWKVLLIEAGPDENEISDVPSLAAYLQLSKLDW 112

Query: 99  AFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---GYDAFKFD 155
           A+ TE  +   L + N R   P G+ LGGSS ++ + Y RG+  DYD W   G   + ++
Sbjct: 113 AYKTEPSTKACLGMQNNRCNWPRGRVLGGSSVLNYMLYVRGNRHDYDHWAELGNPGWDYE 172

Query: 156 NVLKYFKKSE-----FMTDSSKYNEFHGTQGPFVVKPSP 189
            VL+YFKKSE     ++  S+    +HG  G   V+ SP
Sbjct: 173 QVLRYFKKSEDNRNPYLAKSA----YHGRGGLLTVQESP 207

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
FB|FBgn0030590	703	CG9518 [Drosophila melanogaste	0.741	0.207	0.441	2.9e-29
FB|FBgn0030596	633	CG12398 [Drosophila melanogast	0.771	0.240	0.393	3e-26
FB|FBgn0030598	626	CG9503 [Drosophila melanogaste	0.746	0.234	0.410	6.1e-26
FB|FBgn0030592	726	CG9514 [Drosophila melanogaste	0.918	0.249	0.352	1.9e-25
FB|FBgn0030591	865	CG9517 [Drosophila melanogaste	0.791	0.180	0.370	3.2e-24
FB|FBgn0001112	625	Gld "Glucose dehydrogenase" [D	0.771	0.243	0.396	5.5e-24
FB|FBgn0030588	621	CG9521 [Drosophila melanogaste	0.730	0.231	0.408	5.1e-23
FB|FBgn0030589	622	CG9519 [Drosophila melanogaste	0.741	0.234	0.403	2.3e-22
UNIPROTKB|Q47YL1	539	CPS_3434 "Oxidoreductase, GMC	0.710	0.259	0.389	5.4e-22
TIGR_CMR|CPS_3434	539	CPS_3434 "oxidoreductase, GMC	0.710	0.259	0.389	5.4e-22

FB|FBgn0030590 CG9518 [Drosophila melanogaster (taxid:7227)]

 Score = 333 (122.3 bits), Expect = 2.9e-29, P = 2.9e-29
 Identities = 68/154 (44%), Positives = 97/154 (62%)

Query:    42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFV 101
             E+DFI+VG+G+AG+++A+RL+EVR W +LL+EAG D + IS  P     L  S +DWA+ 
Sbjct:    56 EYDFIVVGSGSAGAVVANRLSEVRKWKVLLIEAGPDENEISDVPSLAAYLQLSKLDWAYK 115

Query:   102 TEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---GYDAFKFDNVL 158
             TE  +   L + N R   P G+ LGGSS ++ + Y RG+  DYD W   G   + +DNVL
Sbjct:   116 TEPSTKACLGMQNNRCNWPRGRVLGGSSVLNYMLYVRGNRHDYDHWASLGNPGWDYDNVL 175

Query:   159 KYFKKSEFMTDSSKY---NEFHGTQGPFVVKPSP 189
             +YFKKSE   + + Y   N++HG  G   V+ SP
Sbjct:   176 RYFKKSE--DNRNPYLANNKYHGRGGLLTVQESP 207

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0030596 CG12398 [Drosophila melanogaster (taxid:7227)]

 Score = 304 (112.1 bits), Expect = 3.0e-26, P = 3.0e-26
 Identities = 63/160 (39%), Positives = 96/160 (60%)

Query:    41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAF 100
             + +DFI++G G+AG +LA+RL+E   W++LL+EAGGD   +   P+       S  DW +
Sbjct:    55 ESYDFIVIGGGSAGCVLAARLSENPEWSVLLLEAGGDEPLLIDLPQLYPVFQRSPWDWKY 114

Query:   101 VTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---GYDAFKFDNV 157
             +TE      L++ +QR   P  K LGG SSI+++ Y RG+ RDYD+W   G   + +DN+
Sbjct:   115 LTEPSDRYCLAMEDQRCFWPRAKVLGGCSSINAMMYIRGNRRDYDQWAALGNPGWNYDNI 174

Query:   158 LKYFKKSEFM-TDSSKYNEFHGTQGPFVVK----PSPRVD 192
             L YF+K E M     +++ +HG  GP  V+    PSP +D
Sbjct:   175 LHYFRKLEDMRVPGFEHSPYHGHGGPISVERYRFPSPLLD 214

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0042600 "chorion" evidence=IDA

FB|FBgn0030598 CG9503 [Drosophila melanogaster (taxid:7227)]

 Score = 301 (111.0 bits), Expect = 6.1e-26, P = 6.1e-26
 Identities = 62/151 (41%), Positives = 90/151 (59%)

Query:    43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFVT 102
             +DFI++GAG+AG+++A+RL EV +WN+LL+EAGGD + ++  P   G L  S +DW + T
Sbjct:    60 YDFIVIGAGSAGAVVANRLTEVENWNVLLLEAGGDETELTDVPLMAGYLQLSKIDWQYKT 119

Query:   103 EEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---GYDAFKFDNVLK 159
             E      L++   R   P GK LGGSS ++ + Y RG   DYD W   G  ++ + + L 
Sbjct:   120 EPSGTSCLAMQGGRCNWPRGKVLGGSSVLNYMLYLRGSKHDYDNWEAMGNPSWSYRDALY 179

Query:   160 YFKKSEFMTDSSKYNE-FHGTQGPFVVKPSP 189
             YFKKSE  T+    N  +H T G   V  +P
Sbjct:   180 YFKKSEDNTNQYLANTPYHATGGYLTVGEAP 210

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

FB|FBgn0030592 CG9514 [Drosophila melanogaster (taxid:7227)]

 Score = 298 (110.0 bits), Expect = 1.9e-25, P = 1.9e-25
 Identities = 67/190 (35%), Positives = 111/190 (58%)

Query:     5 LSLVASLIYILSYGSEDXXXXXXSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEV 64
             L+++  LI  ++Y + D         + P +  Q    +DFII+G G+AG++LASRL+E+
Sbjct:    61 LTILPFLIAAIAYYNYDLF----DPENRPFNVQQVGLAYDFIIIGGGSAGTVLASRLSEI 116

Query:    65 RSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKG 124
               W ILL+EAGG  + IS  P     L+ S MDW + T+ Q     ++ ++R     GK 
Sbjct:   117 PHWKILLLEAGGHETEISDVPLLSLYLHKSKMDWKYRTQPQPTACQAMKDKRCCWTRGKV 176

Query:   125 LGGSSSIHSLYYTRGDSRDYDEW---GYDAFKFDNVLKYFKKSEFMTDS--SKYNEFHGT 179
             LGGSS ++++ Y RG+ RD+D+W   G   + ++++L YF+KSE   +   ++   +HGT
Sbjct:   177 LGGSSVLNTMLYIRGNKRDFDQWADFGNPGWSYEDILPYFRKSEDQRNPYLARNKRYHGT 236

Query:   180 QGPFVVKPSP 189
              G + V+ +P
Sbjct:   237 GGLWTVQDAP 246

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030591 CG9517 [Drosophila melanogaster (taxid:7227)]

 Score = 288 (106.4 bits), Expect = 3.2e-24, P = 3.2e-24
 Identities = 60/162 (37%), Positives = 96/162 (59%)

Query:    34 QDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYG 93
             Q+P    +++DF+++G G+AG+++A+RL+EVR+W +LL+EAGGD + IS  P   G L  
Sbjct:   287 QEPTVIRRQYDFVVIGGGSAGAVVANRLSEVRNWTVLLLEAGGDETEISDVPALAGYLQL 346

Query:    94 SSMDWAFVTEEQSGMFL--SLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---G 148
             + +DW + T   S      ++   R   P GK LGGSS ++++ Y RG   DY+ W   G
Sbjct:   347 TELDWKYQTTPSSTRQYCQAMKGDRCFWPRGKVLGGSSVLNAMVYVRGSKNDYNHWASLG 406

Query:   149 YDAFKFDNVLKYFKKSEFMTDSS-KYNEFHGTQGPFVVKPSP 189
                + +D++LKYF KSE + +       +H T G   V+ +P
Sbjct:   407 NPGWDYDSMLKYFLKSEDVRNPYLAKTPYHETGGYLTVQEAP 448

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0001112 Gld "Glucose dehydrogenase" [Drosophila melanogaster (taxid:7227)]

 Score = 283 (104.7 bits), Expect = 5.5e-24, P = 5.5e-24
 Identities = 63/159 (39%), Positives = 91/159 (57%)

Query:    35 DPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGS 94
             +PD    E+DFI++G G+AGS++ASRL+EV  W +LL+EAGGD    +  P       GS
Sbjct:    60 EPDY---EYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGS 116

Query:    95 SMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDA--- 151
              +D+ + TE +    LS   QR   P GK LGG+S ++ + Y RG+  DYD+W  D    
Sbjct:   117 DIDYRYNTEPEPMACLSSMEQRCYWPRGKVLGGTSVLNGMMYVRGNREDYDDWAADGNPG 176

Query:   152 FKFDNVLKYFKKSEFMTDSSKYN-EFHGTQGPFVVKPSP 189
             + +++VL +FKKSE   D  +   E+H   G   V   P
Sbjct:   177 WAYNDVLPFFKKSEDNLDLDEVGTEYHAKGGLLPVGKFP 215

GO:0004344 "glucose dehydrogenase activity" evidence=NAS;TAS

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0008364 "pupal chitin-based cuticle development" evidence=TAS

GO:0042335 "cuticle development" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0046693 "sperm storage" evidence=IMP;TAS

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030588 CG9521 [Drosophila melanogaster (taxid:7227)]

 Score = 274 (101.5 bits), Expect = 5.1e-23, P = 5.1e-23
 Identities = 60/147 (40%), Positives = 83/147 (56%)

Query:    42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFV 101
             E+DFI+VGAGTAG  LA+RL+E   W +LL+EAGG    +   P     L    M+W + 
Sbjct:    59 EYDFIVVGAGTAGCALAARLSENPQWRVLLLEAGGPERLVMDVPIVAHFLQLGEMNWKYR 118

Query:   102 TEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---GYDAFKFDNVL 158
             T+      L+++N R   P GK +GGSS ++ + YTRG+ RDYD W   G   + F +VL
Sbjct:   119 TQPSDHACLAMNNNRCNWPRGKVMGGSSVLNYMMYTRGNRRDYDRWEALGNPGWSFKDVL 178

Query:   159 KYFKKSEFMTDSSKYNEFHGTQGPFVV 185
              YFKK E  +      ++ G  GP  V
Sbjct:   179 PYFKKYEGSSVPDAEEDYVGRNGPVKV 205

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030589 CG9519 [Drosophila melanogaster (taxid:7227)]

 Score = 268 (99.4 bits), Expect = 2.3e-22, P = 2.3e-22
 Identities = 61/151 (40%), Positives = 84/151 (55%)

Query:    42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISY-FPENRGQLYGSSMDWAF 100
             ++DFI+VGAGTAG  LA+RL+E   W +LL+EAGG P N +   P     L    ++W +
Sbjct:    61 KYDFIVVGAGTAGCALAARLSENPRWRVLLLEAGG-PENYAMDIPIVAHLLQLGEINWKY 119

Query:   101 VTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---GYDAFKFDNV 157
              TE  +   L+++N R   P GK +GGSS ++ + YTRG+ RDYD W   G   + ++ V
Sbjct:   120 KTEPSNSYCLAMNNNRCNWPRGKVMGGSSVLNYMMYTRGNRRDYDRWARLGNPGWSYEEV 179

Query:   158 LKYFKKSEFMTDSSKYNEFHGTQGPFVVKPS 188
             L YFKK E            G  GP  V  S
Sbjct:   180 LPYFKKYEGSVVPDADENLVGRNGPVKVSYS 210

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

UNIPROTKB|Q47YL1 CPS_3434 "Oxidoreductase, GMC family" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 263 (97.6 bits), Expect = 5.4e-22, P = 5.4e-22
 Identities = 60/154 (38%), Positives = 90/154 (58%)

Query:    43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQ----LYGSSMDW 98
             FD+IIVGAG+AG +LA+RL E   +N+ L+EAG D  N S   +  G     ++    +W
Sbjct:     9 FDYIIVGAGSAGCVLANRLTEDGKFNVCLLEAGSD--NNSMLVKTPGAFSAFMFLKKFNW 66

Query:    99 AFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---GYDAFKFD 155
             +F  + +  +    + +   +P G+GLGGSS+ +++ Y RG  +DYD W   G + + FD
Sbjct:    67 SFDAKPRKDI---RNGEPLFVPRGRGLGGSSATNAMLYIRGQKQDYDHWAELGNEGWSFD 123

Query:   156 NVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSP 189
             ++L YFKKSE  T+S   +E HG  GP  V   P
Sbjct:   124 DILPYFKKSE--TNSRGESELHGGAGPLQVTDRP 155

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_3434 CPS_3434 "oxidoreductase, GMC family" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 263 (97.6 bits), Expect = 5.4e-22, P = 5.4e-22
 Identities = 60/154 (38%), Positives = 90/154 (58%)

Query:    43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQ----LYGSSMDW 98
             FD+IIVGAG+AG +LA+RL E   +N+ L+EAG D  N S   +  G     ++    +W
Sbjct:     9 FDYIIVGAGSAGCVLANRLTEDGKFNVCLLEAGSD--NNSMLVKTPGAFSAFMFLKKFNW 66

Query:    99 AFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---GYDAFKFD 155
             +F  + +  +    + +   +P G+GLGGSS+ +++ Y RG  +DYD W   G + + FD
Sbjct:    67 SFDAKPRKDI---RNGEPLFVPRGRGLGGSSATNAMLYIRGQKQDYDHWAELGNEGWSFD 123

Query:   156 NVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSP 189
             ++L YFKKSE  T+S   +E HG  GP  V   P
Sbjct:   124 DILPYFKKSE--TNSRGESELHGGAGPLQVTDRP 155

GO:0008150 "biological_process" evidence=ND

GO:0016491 "oxidoreductase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	197
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	7e-35
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	7e-29
TIGR01810	532	TIGR01810, betA, choline dehydrogenase	1e-26
TIGR03970	487	TIGR03970, Rv0697, dehydrogenase, Rv0697 family	6e-23
pfam00732	218	pfam00732, GMC_oxred_N, GMC oxidoreductase	7e-12
PLN02785	587	PLN02785, PLN02785, Protein HOTHEAD	3e-09
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	2e-05
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	1e-04
pfam05834	374	pfam05834, Lycopene_cycl, Lycopene cyclase protein	0.001
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	0.002
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	0.003
PRK07364	415	PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl h	0.003
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	0.003

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score =  128 bits (324), Expect = 7e-35
 Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 24/159 (15%)

Query: 41  QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYF---------PENRGQL 91
            E+D+II+GAG+AG +LA+RL+E    ++LL+EAGG      +F         P   G+ 
Sbjct: 4   MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQ-GKR 62

Query: 92  YGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---- 147
           Y    +WA+ TE +  M    +N+R   P GK LGGSSSI+ + Y RG++ DYD W    
Sbjct: 63  Y----NWAYETEPEPHM----NNRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELP 114

Query: 148 GYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVK 186
           G + + + + L YFKK+E  T     +++ G  GP  V 
Sbjct: 115 GLEGWSYADCLPYFKKAE--TRDGGEDDYRGGDGPLSVT 151

Length = 560

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score =  111 bits (280), Expect = 7e-29
 Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 17/165 (10%)

Query: 42  EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRG----QLYGSSMD 97
           E+D++IVG+G+AGS+LA+RL++    ++L++EAG    +     +        + G   D
Sbjct: 7   EYDYVIVGSGSAGSVLAARLSDAGL-SVLVLEAG--GPDRRPLIQMPAAYAFLMNGPRYD 63

Query: 98  WAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGY----DAFK 153
           W F TE +  +      +    P GK LGGSSSI+ + Y RG   D+D W        + 
Sbjct: 64  WGFRTEPEPHL----RGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWP 119

Query: 154 FDNVLKYFKKSEFMTDSSKYNE--FHGTQGPFVVKPSPRVDKTFD 196
           +D+VL YFK++E +      +   +HG  GP  V P    +    
Sbjct: 120 YDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPIAR 164

Length = 542

>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase

 Score =  105 bits (263), Expect = 1e-26
 Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 14/154 (9%)

Query: 44  DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLY----GSSMDWA 99
           D+II+G G+AGS+LA RL+E  S ++L++EAGG         +    L         +W 
Sbjct: 1   DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWI 60

Query: 100 FVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKFD 155
           + TE +  M    +N+R     GK LGGSSSI+ + Y RG+  DY++W    G +++ + 
Sbjct: 61  YETEPEPHM----NNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYA 116

Query: 156 NVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSP 189
           + L Y+K+ E  T   +   + G  GP  V+  P
Sbjct: 117 DCLPYYKRLE-TTFGGE-KPYRGHDGPIKVRRGP 148

Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. Length = 532

>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family

 Score = 94.9 bits (236), Expect = 6e-23
 Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 13/155 (8%)

Query: 44  DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLY------GSSMD 97
           D ++VG G+AG ++A+RL+E  S  + ++EAG    + S  P              S + 
Sbjct: 2   DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAGPGYRDPSRLPAQLTDGLRLPIGPASPVV 61

Query: 98  WAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDAFKFDNV 157
           W +  E   G       + + I  G+ LGGS +++  Y+ R    D+D W    + +D+V
Sbjct: 62  WRYGVELTDG-----PRRASAIVRGRVLGGSGAVNGGYFCRALPADFDAWPIPGWSWDDV 116

Query: 158 LKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPRVD 192
           L +F+  E  TD       HGT GP  V+ +  +D
Sbjct: 117 LPHFRAIE--TDLDFDGPLHGTAGPIPVRRTAELD 149

This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. Length = 487

>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase

 Score = 61.5 bits (150), Expect = 7e-12
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 104 EQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKFDNVLK 159
           E  G   S++ +R  +P G  +GG SS++     R  +   DEW    G + + +D+ L 
Sbjct: 6   EGGGSAGSVNGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLP 65

Query: 160 YFKKSE 165
           Y  K E
Sbjct: 66  YMDKVE 71

This family of proteins bind FAD as a cofactor. Length = 218

>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD

 Score = 55.2 bits (133), Expect = 3e-09
 Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 19/115 (16%)

Query: 43  FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP---SNISYFPENRGQLYGSSMDWA 99
           +D+I+VG GTAG  LA+ L++  ++++LL+E GG P   +N+S+       L  +S   A
Sbjct: 56  YDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSFLENFHIGLADTSPTSA 113

Query: 100 FVTEEQSGMFLSLS---NQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDA 151
                 S  F+S     N R  +     LGG + I++ +Y+R  +R   + G+DA
Sbjct: 114 ------SQAFISTDGVINARARV-----LGGGTCINAGFYSRASTRFIQKAGWDA 157

Length = 587

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
          E+D +IVGAG AGS  A RLA+    ++L++E G +P
Sbjct: 3  EYDVVIVGAGPAGSSAARRLAK-AGLDVLVLEKGSEP 38

Length = 396

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)

Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA---GGD 77
           Q +D I++GAG AG  LA+R A +    + L+E    GG 
Sbjct: 3  AQRYDAIVIGAGQAGPPLAARAAGL-GMKVALIERGLLGGT 42

Length = 463

>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 44 DFIIVGAGTAGSILASRLAEVR-SWNILLVEAGGDPSNISYFPENR 88
          D +IVGAG AG +LA RL + R    +LL++AG  P     FP N 
Sbjct: 1  DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPP----FPNNH 42

This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare. Length = 374

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75
          D +IVG G  G  LA  LA      + L+EA 
Sbjct: 1  DIVIVGGGPVGLALALALARSGGLKVALIEAT 32

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 41 QEFDFIIVGAGTAGSILASRLAEV-RSWNILLVE 73
           ++D +I+G G  G+  A  L+E     ++ L+E
Sbjct: 2  MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLE 35

Length = 429

>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 26 TTSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74
          T +   +P  P      +D  IVG G  G  LA+ L +     I L+EA
Sbjct: 2  TLTAATSPTLPSTRSLTYDVAIVGGGIVGLTLAAALKD-SGLRIALIEA 49

Length = 415

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76
          +E+D +++GAG AG + A R A+     + LVE G 
Sbjct: 3  KEYDVVVIGAGPAGYVAAIRAAQ-LGLKVALVEKGE 37

Length = 454

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
KOG1238|consensus	623		100.0
PRK02106	560	choline dehydrogenase; Validated	99.97
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	99.97
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	99.97
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	99.96
PLN02785	587	Protein HOTHEAD	99.9
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	99.57
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.57
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.47
PRK10157	428	putative oxidoreductase FixC; Provisional	98.44
PRK10015	429	oxidoreductase; Provisional	98.44
PRK07121	492	hypothetical protein; Validated	98.43
KOG1298|consensus	509		98.34
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.32
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.3
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.28
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.27
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.27
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.26
COG2081	408	Predicted flavoproteins [General function predicti	98.25
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.24
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.23
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.22
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.22
PRK08274	466	tricarballylate dehydrogenase; Validated	98.21
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.21
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.19
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.18
PTZ00058	561	glutathione reductase; Provisional	98.17
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.16
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.16
PLN02985	514	squalene monooxygenase	98.16
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.15
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.15
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.15
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.15
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.14
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.13
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.13
PRK06185	407	hypothetical protein; Provisional	98.13
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.13
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.11
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.11
PRK09126	392	hypothetical protein; Provisional	98.11
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.11
PRK06116	450	glutathione reductase; Validated	98.1
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.09
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.09
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.09
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.09
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.08
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.08
PRK07804	541	L-aspartate oxidase; Provisional	98.07
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.07
PRK06370	463	mercuric reductase; Validated	98.06
PRK08013	400	oxidoreductase; Provisional	98.06
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.05
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.05
PLN02463	447	lycopene beta cyclase	98.05
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.05
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.04
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.04
PLN02697	529	lycopene epsilon cyclase	98.04
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.04
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.03
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.03
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.02
PRK07045	388	putative monooxygenase; Reviewed	98.02
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.02
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.02
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.01
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.01
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.01
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.01
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.01
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.0
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.99
TIGR02053	463	MerA mercuric reductase. This model represents the	97.98
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.98
PTZ00367	567	squalene epoxidase; Provisional	97.97
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.96
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.95
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.95
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.94
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.94
KOG0029|consensus	501		97.94
PRK08244	493	hypothetical protein; Provisional	97.94
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	97.93
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	97.93
PRK13748	561	putative mercuric reductase; Provisional	97.93
PRK07190	487	hypothetical protein; Provisional	97.92
PLN02661	357	Putative thiazole synthesis	97.92
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.92
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.92
PLN02576	496	protoporphyrinogen oxidase	97.92
PRK11445	351	putative oxidoreductase; Provisional	97.91
PRK08294	634	phenol 2-monooxygenase; Provisional	97.91
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.9
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.89
PRK12842	574	putative succinate dehydrogenase; Reviewed	97.89
PRK14694	468	putative mercuric reductase; Provisional	97.89
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	97.89
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.87
PRK06184	502	hypothetical protein; Provisional	97.87
PRK05257	494	malate:quinone oxidoreductase; Validated	97.87
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.87
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.87
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.87
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.86
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.86
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	97.86
PLN02268	435	probable polyamine oxidase	97.85
PRK14727	479	putative mercuric reductase; Provisional	97.85
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	97.85
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	97.85
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.85
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.85
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.85
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.84
PRK07208	479	hypothetical protein; Provisional	97.84
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.84
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.84
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.84
PTZ00052	499	thioredoxin reductase; Provisional	97.84
PRK13339	497	malate:quinone oxidoreductase; Reviewed	97.84
PLN02676	487	polyamine oxidase	97.83
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.82
PRK07395	553	L-aspartate oxidase; Provisional	97.82
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	97.82
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	97.82
PRK06996	398	hypothetical protein; Provisional	97.82
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	97.82
PRK06834	488	hypothetical protein; Provisional	97.81
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.81
PLN02507	499	glutathione reductase	97.81
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.81
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.8
PRK06847	375	hypothetical protein; Provisional	97.8
PRK07588	391	hypothetical protein; Provisional	97.79
PRK06126	545	hypothetical protein; Provisional	97.79
PRK08275	554	putative oxidoreductase; Provisional	97.79
PRK10262	321	thioredoxin reductase; Provisional	97.79
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	97.79
PRK11883	451	protoporphyrinogen oxidase; Reviewed	97.79
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.79
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.78
PLN02815	594	L-aspartate oxidase	97.78
PTZ00383	497	malate:quinone oxidoreductase; Provisional	97.77
PRK06175	433	L-aspartate oxidase; Provisional	97.77
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.77
PRK06753	373	hypothetical protein; Provisional	97.77
PLN02546	558	glutathione reductase	97.77
PRK07233	434	hypothetical protein; Provisional	97.76
PRK08401	466	L-aspartate oxidase; Provisional	97.76
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	97.75
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	97.75
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	97.74
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.73
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	97.73
COG3573	552	Predicted oxidoreductase [General function predict	97.72
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	97.72
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.72
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.72
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.72
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.72
PRK07236	386	hypothetical protein; Provisional	97.72
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.71
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.71
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.7
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.68
PRK08163	396	salicylate hydroxylase; Provisional	97.68
KOG2415|consensus	621		97.68
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.67
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.65
PRK07538	413	hypothetical protein; Provisional	97.65
PRK12839	572	hypothetical protein; Provisional	97.64
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.63
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.62
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.62
PRK09077	536	L-aspartate oxidase; Provisional	97.61
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.6
COG0579	429	Predicted dehydrogenase [General function predicti	97.57
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.56
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.53
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.53
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.53
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.53
PRK08071	510	L-aspartate oxidase; Provisional	97.52
PRK05868	372	hypothetical protein; Validated	97.52
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.51
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.51
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.5
PLN02568	539	polyamine oxidase	97.5
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.5
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.49
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	97.48
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	97.47
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.43
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.42
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.42
PRK06475	400	salicylate hydroxylase; Provisional	97.4
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.39
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	97.39
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.38
PRK07846	451	mycothione reductase; Reviewed	97.36
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.34
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.33
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.32
PRK07512	513	L-aspartate oxidase; Provisional	97.3
TIGR00275	400	flavoprotein, HI0933 family. The model when search	97.3
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.3
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.28
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.27
PRK12831	464	putative oxidoreductase; Provisional	97.27
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	97.24
KOG2820|consensus	399		97.21
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.19
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.17
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.17
COG3349	485	Uncharacterized conserved protein [Function unknow	97.15
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.12
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.12
PLN02612	567	phytoene desaturase	97.12
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.1
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.1
PLN02529	738	lysine-specific histone demethylase 1	97.08
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.07
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.05
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.01
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.99
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	96.97
PLN02852	491	ferredoxin-NADP+ reductase	96.95
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	96.94
KOG3855|consensus	481		96.94
KOG1399|consensus	448		96.94
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.93
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	96.93
KOG0685|consensus	498		96.92
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.89
PRK13977	576	myosin-cross-reactive antigen; Provisional	96.87
KOG2665|consensus	453		96.86
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	96.84
KOG2614|consensus	420		96.84
PLN02487	569	zeta-carotene desaturase	96.78
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	96.78
PLN03000	881	amine oxidase	96.73
KOG0405|consensus	478		96.71
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.69
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.67
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.64
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.63
KOG4716|consensus	503		96.63
PLN02976	1713	amine oxidase	96.6
KOG2853|consensus	509		96.59
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.49
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	96.49
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	96.47
KOG2960|consensus	328		96.45
PTZ00188	506	adrenodoxin reductase; Provisional	96.37
PRK09564	444	coenzyme A disulfide reductase; Reviewed	96.34
KOG1335|consensus	506		96.32
PRK06567	1028	putative bifunctional glutamate synthase subunit b	96.32
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	96.28
PRK13512	438	coenzyme A disulfide reductase; Provisional	96.25
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	96.22
PRK13984	604	putative oxidoreductase; Provisional	96.22
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	96.21
KOG4254|consensus	561		96.12
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.09
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	96.05
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.03
PRK09897	534	hypothetical protein; Provisional	95.92
KOG4405|consensus	547		95.91
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	95.89
KOG2311|consensus	679		95.87
KOG0042|consensus	680		95.82
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	95.78
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	95.7
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	95.62
KOG3851|consensus	446		95.52
KOG1276|consensus	491		95.36
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	95.31
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	95.28
COG2907	447	Predicted NAD/FAD-binding protein [General functio	95.21
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	95.17
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	95.14
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	95.01
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.98
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	94.82
KOG2844|consensus	856		94.74
KOG2755|consensus	334		94.53
COG0569	225	TrkA K+ transport systems, NAD-binding component [	94.39
KOG1439|consensus	440		94.05
KOG1800|consensus	468		94.03
KOG2404|consensus	477		93.69
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	93.63
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	93.59
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	93.52
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	93.44
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	93.28
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	93.2
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	93.14
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	92.97
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	92.79
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	92.74
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	92.69
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	92.66
PRK07846	451	mycothione reductase; Reviewed	92.53
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	92.45
TIGR02053	463	MerA mercuric reductase. This model represents the	92.39
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	92.34
PRK14989	847	nitrite reductase subunit NirD; Provisional	92.33
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	92.27
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	92.19
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	92.15
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	92.15
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.11
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	92.1
PRK06370	463	mercuric reductase; Validated	91.88
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	91.86
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	91.86
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	91.83
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	91.8
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	91.78
PRK13512	438	coenzyme A disulfide reductase; Provisional	91.73
KOG0399|consensus	2142		91.57
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	91.37
KOG0404|consensus	322		91.2
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	91.01
PRK09564	444	coenzyme A disulfide reductase; Reviewed	90.86
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	90.84
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	90.8
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	90.68
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	90.67
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.65
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	90.37
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	90.37
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	90.29
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	90.15
PRK06116	450	glutathione reductase; Validated	90.13
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.12
PRK07845	466	flavoprotein disulfide reductase; Reviewed	89.99
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	89.79
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.73
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	89.67
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	89.66
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	89.64
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	89.61
PTZ00153	659	lipoamide dehydrogenase; Provisional	89.49
PRK10262	321	thioredoxin reductase; Provisional	89.48
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	89.4
PLN02507	499	glutathione reductase	89.32
PRK13748	561	putative mercuric reductase; Provisional	89.27
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	89.25
PRK14694	468	putative mercuric reductase; Provisional	89.24
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	89.18
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	89.16
PRK06719	157	precorrin-2 dehydrogenase; Validated	88.81
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.59
PLN02546	558	glutathione reductase	88.53
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.41
PRK14727	479	putative mercuric reductase; Provisional	88.4
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	88.36
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.29
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	88.24
PRK04148	134	hypothetical protein; Provisional	88.2
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.0
PTZ00058	561	glutathione reductase; Provisional	87.93
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	87.83
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	87.79
PRK14989	847	nitrite reductase subunit NirD; Provisional	87.66
PRK12770	352	putative glutamate synthase subunit beta; Provisio	87.63
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	87.58
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.53
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	87.37
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.2
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.14
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	86.92
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	86.54
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	86.39
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	86.3
PTZ00052	499	thioredoxin reductase; Provisional	86.21
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	86.21
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	86.15
KOG2495|consensus	491		86.12
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	86.04
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	85.85
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	85.74
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	85.74
PRK10669	558	putative cation:proton antiport protein; Provision	85.61
PRK15116	268	sulfur acceptor protein CsdL; Provisional	85.61
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	85.4
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	84.55
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	84.42
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	84.34
PRK09496	453	trkA potassium transporter peripheral membrane com	84.28
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	84.15
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	84.1
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	84.04
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	83.56
PRK07417	279	arogenate dehydrogenase; Reviewed	83.35
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	83.08
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	83.07
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	83.06
PRK09496	453	trkA potassium transporter peripheral membrane com	83.01
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	83.01
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	82.92
PRK12831	464	putative oxidoreductase; Provisional	82.58
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	82.43
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	82.42
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	82.38
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	82.2
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	82.06
KOG2852|consensus	380		81.85
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	81.83
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	81.04
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	80.87
PRK11730	715	fadB multifunctional fatty acid oxidation complex	80.85
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	80.74
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	80.73
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	80.67
PLN02353	473	probable UDP-glucose 6-dehydrogenase	80.66
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	80.64
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	80.61
PRK06223	307	malate dehydrogenase; Reviewed	80.59
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	80.18
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	80.07

>KOG1238|consensus

Probab=100.00  E-value=1.8e-37  Score=284.38  Aligned_cols=158  Identities=41%  Similarity=0.743  Sum_probs=143.8

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCCCcccCCccccCccCCCCcccccccccccccccCCCCcc
Q psy6708          38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRT  117 (197)
Q Consensus        38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~  117 (197)
                      +...+|||||||+|+|||++|.||+|++..+|||||+|+..+...++|.+...++.+.++|.|.++|++.+|..+.++.+
T Consensus        53 ~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m~~~~c  132 (623)
T KOG1238|consen   53 ELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQHACLAMSEDRC  132 (623)
T ss_pred             ccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccChhhhhhhcCCce
Confidence            34569999999999999999999999999999999999998777788866666778899999999999999999999999


Q ss_pred             ccccccccCCCccccccccccCChhhHhhh---CCCCCCHhhHHHHHHHHhhhcCCCCC-CCCCCCCCCEEeecCCCCCC
Q psy6708         118 TIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---GYDAFKFDNVLKYFKKSEFMTDSSKY-NEFHGTQGPFVVKPSPRVDK  193 (197)
Q Consensus       118 ~~~~g~~vGG~S~in~~~~~R~~~~df~~w---g~~~W~~d~l~pyy~~~E~~~~~~~~-~~~hG~~Gpl~vs~~~~~~~  193 (197)
                      .|+|||++||||++|+|+|.|+++.|||.|   |+++|+|++++|||+|+|....+... .++|+..||+.|+...+..+
T Consensus       133 ~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~~~~~~  212 (623)
T KOG1238|consen  133 YWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAGVYPNN  212 (623)
T ss_pred             ecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceeccccccCc
Confidence            999999999999999999999999999999   88999999999999999998766543 55999999999999988877


Q ss_pred             Cc
Q psy6708         194 TF  195 (197)
Q Consensus       194 ~~  195 (197)
                      ++
T Consensus       213 ~~  214 (623)
T KOG1238|consen  213 LF  214 (623)
T ss_pred             hh
Confidence            54

>PRK02106 choline dehydrogenase; Validated

Probab=99.97  E-value=2.7e-31  Score=245.57  Aligned_cols=142  Identities=40%  Similarity=0.774  Sum_probs=118.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC---CCcccCCccccC-ccCCCCcccccccccccccccCCCCc
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP---SNISYFPENRGQ-LYGSSMDWAFVTEEQSGMFLSLSNQR  116 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~---~~~~~~p~~~~~-~~~~~~~w~~~~~p~~~~~~~~~~~~  116 (197)
                      ++|||||||||++|+++|.||||+++++|||||+|+..   ......|..... .....++|.|.+.|++.    ..++.
T Consensus         4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~----~~~~~   79 (560)
T PRK02106          4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPH----MNNRR   79 (560)
T ss_pred             CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCC----CCCCe
Confidence            46999999999999999999998789999999999754   223334442211 12345789998888874    45678


Q ss_pred             cccccccccCCCccccccccccCChhhHhhh----CCCCCCHhhHHHHHHHHhhhcCCCCCCCCCCCCCCEEeecC
Q psy6708         117 TTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPS  188 (197)
Q Consensus       117 ~~~~~g~~vGG~S~in~~~~~R~~~~df~~w----g~~~W~~d~l~pyy~~~E~~~~~~~~~~~hG~~Gpl~vs~~  188 (197)
                      +.+.+|++|||||+||+|+|.|+++.||+.|    |.++|+|++|+|||+|+|+++.+.  .+.||..||++++++
T Consensus        80 ~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~--~~~~g~~gp~~~~~~  153 (560)
T PRK02106         80 MECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGE--DDYRGGDGPLSVTRG  153 (560)
T ss_pred             eecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCC--ccccCCCCCEEEeCC
Confidence            8999999999999999999999999999999    678999999999999999988432  457999999999876

>TIGR01810 betA choline dehydrogenase

Probab=99.97  E-value=8.9e-31  Score=240.76  Aligned_cols=144  Identities=35%  Similarity=0.673  Sum_probs=119.0

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCC---CcccCCccccC-ccCCCCcccccccccccccccCCCCcccc
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPS---NISYFPENRGQ-LYGSSMDWAFVTEEQSGMFLSLSNQRTTI  119 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~---~~~~~p~~~~~-~~~~~~~w~~~~~p~~~~~~~~~~~~~~~  119 (197)
                      ||||||||+||+++|.|||++..++|||||+|+...   .....|..... .....++|.|.+.|++.    ++++.+.+
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~   76 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPH----MNNRRVGH   76 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCC----CCCceEee
Confidence            899999999999999999995448999999998642   23344432211 12345789999888875    46788999


Q ss_pred             ccccccCCCccccccccccCChhhHhhh----CCCCCCHhhHHHHHHHHhhhcCCCCCCCCCCCCCCEEeecCCCCCC
Q psy6708         120 PCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPRVDK  193 (197)
Q Consensus       120 ~~g~~vGG~S~in~~~~~R~~~~df~~w----g~~~W~~d~l~pyy~~~E~~~~~~~~~~~hG~~Gpl~vs~~~~~~~  193 (197)
                      ++||+|||||+||+|+|.|+++.||+.|    |.++|+|++|+|||+|+|+++...  .++||..||+.+++++...+
T Consensus        77 ~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~--~~~~g~~G~~~v~~~~~~~~  152 (532)
T TIGR01810        77 ARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGE--KPYRGHDGPIKVRRGPADNP  152 (532)
T ss_pred             ecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCC--cccCCCCCCEEEecCCCCCH
Confidence            9999999999999999999999999999    668999999999999999987643  47899999999998776544

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=99.97  E-value=6.6e-31  Score=223.69  Aligned_cols=145  Identities=37%  Similarity=0.661  Sum_probs=110.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCCCcccCCc-cccCccCCCCcccccccccccccccCCCCcccccc
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPE-NRGQLYGSSMDWAFVTEEQSGMFLSLSNQRTTIPC  121 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~~~~~~p~-~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~~~~  121 (197)
                      |||||||||++|+++|.|||++++++|||||+|++.......+. .........++|.+.+.|+..    .+++.+.+++
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~   76 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQPF----LNGRTINWPR   76 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEEC----TTTTSEEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccccc----cccceeeeec
Confidence            89999999999999999999854589999999998744322111 111223456778887777764    5677788889


Q ss_pred             ccccCCCccccccccccCChhhHhhh----CCCCCCHhhHHHHHHHHhhhcCCCCCCCCCCCCCCEEe-ecCCCCCC
Q psy6708         122 GKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVV-KPSPRVDK  193 (197)
Q Consensus       122 g~~vGG~S~in~~~~~R~~~~df~~w----g~~~W~~d~l~pyy~~~E~~~~~~~~~~~hG~~Gpl~v-s~~~~~~~  193 (197)
                      |++|||||+||+|++.|+++.||+.|    |.++|+|++|+|||+++|+++.++  .+.||.+||+.+ ..+....|
T Consensus        77 G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~--~~~~g~~~~~~v~~~~~~~~~  151 (296)
T PF00732_consen   77 GKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS--SDLHGVDGPLPVSSSPPYPSP  151 (296)
T ss_dssp             B-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB--GGGSCBSSSEEEHHHCSCHCT
T ss_pred             ceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc--ccccccccccccccccCCCCH
Confidence            99999999999999999999999999    567899999999999999999887  788999999999 44444333

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=99.96  E-value=2.4e-30  Score=238.83  Aligned_cols=150  Identities=37%  Similarity=0.707  Sum_probs=126.4

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCCC-cccCCccccCccCC-CCcccccccccccccccCCCCc
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSN-ISYFPENRGQLYGS-SMDWAFVTEEQSGMFLSLSNQR  116 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~~-~~~~p~~~~~~~~~-~~~w~~~~~p~~~~~~~~~~~~  116 (197)
                      ...+|||||||+|.+||++|.||+ +++++|||||+|+.... ..++|..+...... .++|.|.+.+++.    ++++.
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs-~~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~----~~~r~   78 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLS-DAGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEPH----LRGRE   78 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhc-CCCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCcccC----CCCcc
Confidence            346899999999999999999999 59999999999987533 45666555444443 7889999988884    57889


Q ss_pred             cccccccccCCCccccccccccCChhhHhhh----CCCCCCHhhHHHHHHHHhhhcCCCCC--CCCCCCCCCEEeecCCC
Q psy6708         117 TTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKFDNVLKYFKKSEFMTDSSKY--NEFHGTQGPFVVKPSPR  190 (197)
Q Consensus       117 ~~~~~g~~vGG~S~in~~~~~R~~~~df~~w----g~~~W~~d~l~pyy~~~E~~~~~~~~--~~~hG~~Gpl~vs~~~~  190 (197)
                      +.++++++|||+|+||+|+|+|+++.||+.|    |.++|+|++++|||+++|++.+...+  ...||..||+.++.+..
T Consensus        79 ~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~  158 (542)
T COG2303          79 LAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRS  158 (542)
T ss_pred             ccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCC
Confidence            9999999999999999999999999999999    56899999999999999998775433  34899999999988743


Q ss_pred             CCC
Q psy6708         191 VDK  193 (197)
Q Consensus       191 ~~~  193 (197)
                      ..|
T Consensus       159 ~~~  161 (542)
T COG2303         159 PNP  161 (542)
T ss_pred             chH
Confidence            343

>PLN02785 Protein HOTHEAD

Probab=99.90  E-value=6.1e-24  Score=197.85  Aligned_cols=119  Identities=27%  Similarity=0.385  Sum_probs=96.6

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC--CCcccCCccccCccCCCCcccccccccccccccCCCC
Q psy6708          38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP--SNISYFPENRGQLYGSSMDWAFVTEEQSGMFLSLSNQ  115 (197)
Q Consensus        38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~--~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~  115 (197)
                      +....|||||||+|+|||++|.+|++  +.+|||||+|+..  .+....+..   +....++|.+.+.+|..    .+++
T Consensus        51 ~~~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~~~~---~~~~~~d~~~~~~~q~~----~~~~  121 (587)
T PLN02785         51 GGDSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSFLEN---FHIGLADTSPTSASQAF----ISTD  121 (587)
T ss_pred             cccccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhhHHh---hCCcccccCCccccccc----cCCC
Confidence            34568999999999999999999998  5899999999853  122222221   12345689998888863    3567


Q ss_pred             ccccccccccCCCccccccccccCChhhHhhhCCCCCCHhhHHHHHHHHhhhc
Q psy6708         116 RTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDAFKFDNVLKYFKKSEFMT  168 (197)
Q Consensus       116 ~~~~~~g~~vGG~S~in~~~~~R~~~~df~~wg~~~W~~d~l~pyy~~~E~~~  168 (197)
                      .+.++|||+|||||+||+|+|.|+++.||+.   .+|+|++++|||+++|+..
T Consensus       122 ~~~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~---~GW~~~~~~~~~~~~e~~~  171 (587)
T PLN02785        122 GVINARARVLGGGTCINAGFYSRASTRFIQK---AGWDAKLVNESYPWVERQI  171 (587)
T ss_pred             ceeccccceecchhhhcCeEEEeCCHHHhcc---CCCCcccccchHHHHhccc
Confidence            7899999999999999999999999999973   6799999999999999854

>TIGR02462 pyranose_ox pyranose oxidase

Probab=99.57  E-value=1.1e-14  Score=134.70  Aligned_cols=124  Identities=18%  Similarity=0.215  Sum_probs=80.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCCCc---------ccC--Cc--ccc----CccC------------
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNI---------SYF--PE--NRG----QLYG------------   93 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~~~---------~~~--p~--~~~----~~~~------------   93 (197)
                      ||+||||+|++|+++|+.|++ .+.+|||||+|......         +.+  +.  +..    .++.            
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~-~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVD-AGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPT   79 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHH-CCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCC
Confidence            799999999999999999998 79999999999875310         000  00  000    0000            


Q ss_pred             -CCCccccccccccccc-ccCC-----CCccc-cccccccCCCccccccccccCChhhHhhh-CCCCC--CHhhHHHHHH
Q psy6708          94 -SSMDWAFVTEEQSGMF-LSLS-----NQRTT-IPCGKGLGGSSSIHSLYYTRGDSRDYDEW-GYDAF--KFDNVLKYFK  162 (197)
Q Consensus        94 -~~~~w~~~~~p~~~~~-~~~~-----~~~~~-~~~g~~vGG~S~in~~~~~R~~~~df~~w-g~~~W--~~d~l~pyy~  162 (197)
                       +.-.|+-.  |..... .+.|     ...+. ..+.+.|||+|++|++.+.|+++++- .| + .+|  +|++|+|||.
T Consensus        80 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g~~-~dWPI~y~eL~PyY~  155 (544)
T TIGR02462        80 LDPTAWSAS--IESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PKLS-DDAAEDDAEWDRLYT  155 (544)
T ss_pred             CCccccccC--CCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc-cCCC-CCCCCCHHHHHHHHH
Confidence             00112210  000000 0000     01111 44779999999999999999999763 44 5 789  9999999999


Q ss_pred             HHhhhcCCC
Q psy6708         163 KSEFMTDSS  171 (197)
Q Consensus       163 ~~E~~~~~~  171 (197)
                      ++|++++-.
T Consensus       156 ~Ae~~~gv~  164 (544)
T TIGR02462       156 KAESLIGTS  164 (544)
T ss_pred             HHHHHhCCC
Confidence            999987643

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.57  E-value=7.1e-08  Score=86.00  Aligned_cols=37  Identities=49%  Similarity=0.846  Sum_probs=34.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .+||+||||+|+||+++|.+|++ .|.+|||||++...
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~-~G~~VlvlEk~~~~   38 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAK-AGLDVLVLEKGSEP   38 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHH-cCCeEEEEecCCCC
Confidence            47999999999999999999998 68999999999875

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.47  E-value=5.6e-07  Score=82.92  Aligned_cols=40  Identities=28%  Similarity=0.392  Sum_probs=35.8

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++.++|+||||+|.+|+++|.++++ .|.+|+|||+.+..
T Consensus        57 ~~~~~~DVvVVG~G~AGl~AAi~Aa~-~Ga~VivlEK~~~~   96 (506)
T PRK06481         57 ELKDKYDIVIVGAGGAGMSAAIEAKD-AGMNPVILEKMPVA   96 (506)
T ss_pred             cccccCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCCCC
Confidence            45568999999999999999999998 79999999998753

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.44  E-value=2.4e-07  Score=83.56  Aligned_cols=36  Identities=47%  Similarity=0.666  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +.||+||||+|++|+++|..|++ .|.+|+|||++..
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~-~G~~V~llEr~~~   39 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAR-EGAQVLVIERGNS   39 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHh-CCCeEEEEEcCCC
Confidence            46999999999999999999998 7999999999865

>PRK10015 oxidoreductase; Provisional

Probab=98.44  E-value=2.5e-07  Score=83.58  Aligned_cols=37  Identities=41%  Similarity=0.706  Sum_probs=34.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ++||+||||+|+||+++|..|++ .|.+|+|||++...
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~-~G~~VlliEr~~~~   40 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMAR-AGLDVLVIERGDSA   40 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCCC
Confidence            46999999999999999999998 79999999998753

>PRK07121 hypothetical protein; Validated

Probab=98.43  E-value=4.7e-07  Score=82.90  Aligned_cols=49  Identities=27%  Similarity=0.439  Sum_probs=39.7

Q ss_pred             CCcCCCCCCCCCCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          27 TSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        27 ~~~~~~~~~~~~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .+++....  ..+..++|+||||+|.||+++|.++++ .|.+|+|||+....
T Consensus         7 ~~~~~~~~--~~~~~~~DVvVVGaG~AGl~AA~~aae-~G~~VillEK~~~~   55 (492)
T PRK07121          7 RPVSAEDV--TSWDDEADVVVVGFGAAGACAAIEAAA-AGARVLVLERAAGA   55 (492)
T ss_pred             ccCCCccc--cccCCccCEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCCCC
Confidence            34544432  345678999999999999999999998 79999999998763

>KOG1298|consensus

Probab=98.34  E-value=8.7e-07  Score=78.72  Aligned_cols=40  Identities=38%  Similarity=0.428  Sum_probs=35.5

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +....+|+||||+|.+|+++|+.|++ .|+||+|||+.-..
T Consensus        41 ~~~~~~DvIIVGAGV~GsaLa~~L~k-dGRrVhVIERDl~E   80 (509)
T KOG1298|consen   41 RNDGAADVIIVGAGVAGSALAYALAK-DGRRVHVIERDLSE   80 (509)
T ss_pred             ccCCcccEEEECCcchHHHHHHHHhh-CCcEEEEEeccccc
Confidence            44568999999999999999999998 69999999998554

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.32  E-value=5.3e-07  Score=74.59  Aligned_cols=36  Identities=39%  Similarity=0.552  Sum_probs=29.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ++|++|||+|++|+++|+.|++ .++||+++|+....
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~-~g~kV~v~E~~~~~   52 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAK-AGLKVAVIERKLSP   52 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHH-HTS-EEEEESSSS-
T ss_pred             cCCEEEECCChhHHHHHHHHHH-CCCeEEEEecCCCC
Confidence            7999999999999999999998 59999999997653

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.30  E-value=9.1e-07  Score=74.10  Aligned_cols=34  Identities=41%  Similarity=0.688  Sum_probs=32.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ||++|||+|++|+++|.+|++ .|.+|+|||++..
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~-~g~~v~vie~~~~   34 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLAD-KGLRVLLLEKKSF   34 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCC
Confidence            799999999999999999997 7999999999965

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.28  E-value=7.9e-07  Score=80.13  Aligned_cols=35  Identities=34%  Similarity=0.566  Sum_probs=27.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ||+||||+|+||+++|..+++ .|.+|+|||++...
T Consensus         1 ydviIIGgGaAGl~aA~~aa~-~g~~V~vlE~~~~~   35 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAE-KGARVLVLERNKRV   35 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHH-TT--EEEE-SSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHh-CCCCEEEEeCCccc
Confidence            899999999999999999998 79999999999765

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.27  E-value=8.6e-07  Score=78.60  Aligned_cols=32  Identities=28%  Similarity=0.581  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      ||+||||+|+||+++|..|++ .|.+|+|||+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~-~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLAR-AGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCCcEEEEECC
Confidence            799999999999999999998 79999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.27  E-value=1.1e-06  Score=75.04  Aligned_cols=36  Identities=42%  Similarity=0.628  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +||+||||+|++|+++|..|++ .|.+|+|+|+.+..
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~-~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALAR-AGIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHH-TTCEEEEEESSSSC
T ss_pred             CceEEEECCCHHHHHHHHHHHh-cccccccchhcccc
Confidence            5899999999999999999998 79999999998764

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.26  E-value=1.2e-06  Score=74.08  Aligned_cols=36  Identities=36%  Similarity=0.406  Sum_probs=33.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +||++|||+|++|+++|.+|++ .+.+|+|||++...
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~-~G~~V~vlEk~~~~   56 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAK-NGLKVCVLERSLAF   56 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence            7999999999999999999998 79999999998653

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.25  E-value=1.2e-06  Score=78.03  Aligned_cols=39  Identities=33%  Similarity=0.588  Sum_probs=35.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSN   80 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~~   80 (197)
                      +.+|+||||+|+||.++|..+++ +|++|+|||+++....
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~-~G~~V~lid~~~k~Gr   40 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAK-AGRRVLLIDKGPKLGR   40 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhh-cCCEEEEEecCccccc
Confidence            57999999999999999999998 8999999999987543

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.24  E-value=1.4e-06  Score=73.74  Aligned_cols=36  Identities=33%  Similarity=0.361  Sum_probs=33.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ++|++|||+|++|+++|.+|++ +|.+|+|||+....
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~-~G~~V~liEk~~~~   60 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAK-AGLKVAVFERKLSF   60 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHh-CCCeEEEEecCCCC
Confidence            6999999999999999999997 79999999987653

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.23  E-value=1.2e-06  Score=79.63  Aligned_cols=38  Identities=21%  Similarity=0.349  Sum_probs=35.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +++||+||||+|.+||++|..|++ .|++||+||+....
T Consensus         2 ~~~~DViViGtGL~e~ilAa~Ls~-~GkkVLhlD~n~~y   39 (443)
T PTZ00363          2 DETYDVIVCGTGLKECILSGLLSV-NGKKVLHMDRNPYY   39 (443)
T ss_pred             CCcceEEEECCChHHHHHHhhhhh-CCCEEEEecCCCCc
Confidence            358999999999999999999997 79999999998776

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.22  E-value=1.5e-06  Score=79.19  Aligned_cols=37  Identities=27%  Similarity=0.443  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ...||+||||+|+||+++|..|++ .|.+|+|||+...
T Consensus        37 ~~~~DViIVGaGPAG~~aA~~LA~-~G~~VlllEr~~~   73 (450)
T PLN00093         37 GRKLRVAVIGGGPAGACAAETLAK-GGIETFLIERKLD   73 (450)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCC
Confidence            347999999999999999999997 7999999999753

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.22  E-value=2.1e-06  Score=76.25  Aligned_cols=39  Identities=33%  Similarity=0.481  Sum_probs=35.0

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -+..+|++|||+|++|+++|..|++ .|.+|+|||+.+..
T Consensus        15 ~~~~~dV~IvGaG~aGl~~A~~L~~-~G~~v~v~E~~~~~   53 (415)
T PRK07364         15 RSLTYDVAIVGGGIVGLTLAAALKD-SGLRIALIEAQPAE   53 (415)
T ss_pred             CccccCEEEECcCHHHHHHHHHHhc-CCCEEEEEecCCcc
Confidence            3457999999999999999999997 79999999998753

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.21  E-value=1.7e-06  Score=78.54  Aligned_cols=37  Identities=27%  Similarity=0.372  Sum_probs=33.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +.++|+||||+|.+|+++|.++++ .|.+|+|||+++.
T Consensus         2 ~~~~DVvVVG~G~aGl~AA~~aa~-~G~~V~vlEk~~~   38 (466)
T PRK08274          2 ASMVDVLVIGGGNAALCAALAARE-AGASVLLLEAAPR   38 (466)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            357999999999999999999998 7999999999763

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.21  E-value=1.9e-06  Score=75.68  Aligned_cols=38  Identities=32%  Similarity=0.570  Sum_probs=34.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +..+|+||||+|++|+++|..|++ .|.+|+|||++...
T Consensus         3 ~~~~dv~IvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~~   40 (388)
T PRK07608          3 HMKFDVVVVGGGLVGASLALALAQ-SGLRVALLAPRAPP   40 (388)
T ss_pred             CccCCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCCc
Confidence            457899999999999999999997 79999999998763

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.19  E-value=2e-06  Score=74.74  Aligned_cols=36  Identities=36%  Similarity=0.614  Sum_probs=33.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .||+||||||.+|+++|..|++ .|++|||||+....
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~-~gk~VLIvekR~HI   36 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQ-LGKRVLIVEKRNHI   36 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHH-cCCEEEEEeccccC
Confidence            3899999999999999998887 79999999998775

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.18  E-value=2.9e-06  Score=57.61  Aligned_cols=31  Identities=29%  Similarity=0.442  Sum_probs=27.8

Q ss_pred             EECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          47 IVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        47 IVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      |||+|++|+++|.+|++ .+.+|+|+|+....
T Consensus         1 IiGaG~sGl~aA~~L~~-~g~~v~v~E~~~~~   31 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAK-AGYRVTVFEKNDRL   31 (68)
T ss_dssp             EES-SHHHHHHHHHHHH-TTSEEEEEESSSSS
T ss_pred             CEeeCHHHHHHHHHHHH-CCCcEEEEecCccc
Confidence            89999999999999998 69999999998764

...

>PTZ00058 glutathione reductase; Provisional

Probab=98.17  E-value=4.1e-06  Score=78.31  Aligned_cols=39  Identities=28%  Similarity=0.418  Sum_probs=34.3

Q ss_pred             CCCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          37 DQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        37 ~~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +....+||+||||+|+||..+|.++++ .|++|+|||++.
T Consensus        43 ~~~~~~yDvvVIG~G~aG~~aA~~aa~-~G~~ValIEk~~   81 (561)
T PTZ00058         43 KKPRMVYDLIVIGGGSGGMAAARRAAR-NKAKVALVEKDY   81 (561)
T ss_pred             cCCCccccEEEECcCHHHHHHHHHHHH-cCCeEEEEeccc
Confidence            344468999999999999999999998 799999999863

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.16  E-value=2e-06  Score=71.44  Aligned_cols=36  Identities=36%  Similarity=0.387  Sum_probs=32.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +.|+||||+|++|+++|++||+ .+.||+++|+.-..
T Consensus        30 esDViIVGaGPsGLtAAyyLAk-~g~kV~i~E~~ls~   65 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAK-AGLKVAIFERKLSF   65 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHh-CCceEEEEEeeccc
Confidence            6799999999999999999998 79999999996543

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.16  E-value=2.2e-06  Score=75.55  Aligned_cols=36  Identities=33%  Similarity=0.535  Sum_probs=33.1

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ++.||+||||+|++|+++|..|++ .|.+|+|||+.+
T Consensus         3 ~~~~dViIvGgG~aGl~~A~~La~-~G~~V~liE~~~   38 (391)
T PRK08020          3 NQPTDIAIVGGGMVGAALALGLAQ-HGFSVAVLEHAA   38 (391)
T ss_pred             cccccEEEECcCHHHHHHHHHHhc-CCCEEEEEcCCC
Confidence            357999999999999999999997 799999999975

>PLN02985 squalene monooxygenase

Probab=98.16  E-value=5.1e-06  Score=76.86  Aligned_cols=41  Identities=34%  Similarity=0.419  Sum_probs=36.1

Q ss_pred             CCCCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          36 PDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        36 ~~~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +......+|+||||+|++|+++|..|++ .|.+|+|||+...
T Consensus        37 ~~~~~~~~DViIVGAG~aGlalA~aLa~-~G~~V~vlEr~~~   77 (514)
T PLN02985         37 EERKDGATDVIIVGAGVGGSALAYALAK-DGRRVHVIERDLR   77 (514)
T ss_pred             ccCcCCCceEEEECCCHHHHHHHHHHHH-cCCeEEEEECcCC
Confidence            3456678999999999999999999998 7999999999753

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.15  E-value=2.6e-06  Score=78.27  Aligned_cols=37  Identities=24%  Similarity=0.438  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..+|+||||+|.+|+++|..||+ +|.+|+|||+-...
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~-~G~~V~VlE~~~~~   38 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLAR-AGLKVTVLEKNDRV   38 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHh-CCCEEEEEEecCCC
Confidence            46999999999999999999998 89999999976553

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.15  E-value=2.7e-06  Score=72.71  Aligned_cols=32  Identities=44%  Similarity=0.667  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      |+||||+|.+|+++|.+|++ .|.+|+|||++.
T Consensus         1 DvvIIGaGi~G~~~A~~La~-~G~~V~l~e~~~   32 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELAR-RGHSVTLLERGD   32 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHH-TTSEEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHH-CCCeEEEEeecc
Confidence            89999999999999999998 799999999993

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.15  E-value=2.8e-06  Score=74.26  Aligned_cols=36  Identities=28%  Similarity=0.414  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .+||++|||+|..|+++|..|++ .|.+|+|||++..
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~-~g~~V~lie~~~~   37 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLAR-RGLRVLGLDRFMP   37 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHH-CCCeEEEEecccC
Confidence            36999999999999999999998 6999999999853

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.15  E-value=2.7e-06  Score=76.76  Aligned_cols=35  Identities=34%  Similarity=0.720  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ++||+||||+|+||..+|.+|++ .+++|+|+|+++
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~-~g~~V~lie~~~   36 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAK-AGWRVALIEQSN   36 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHH-CCCeEEEEcCCC
Confidence            36999999999999999999998 799999999874

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.14  E-value=3.3e-06  Score=74.64  Aligned_cols=37  Identities=32%  Similarity=0.436  Sum_probs=33.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ...+|++|||+|++|+++|..|++ .|.+|+|||+.+.
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~-~G~~v~liE~~~~   40 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALAD-AGLSVALVEGREP   40 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhc-CCCEEEEEeCCCC
Confidence            457999999999999999999997 7999999999753

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.13  E-value=2.7e-06  Score=77.23  Aligned_cols=35  Identities=37%  Similarity=0.645  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ++||+||||+|+||..+|.++++ .|++|+|+|++.
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~-~G~~V~liE~~~   35 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAE-HGAKALLVEAKK   35 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH-CCCcEEEecccc
Confidence            36999999999999999999998 799999999853

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.13  E-value=3e-06  Score=75.46  Aligned_cols=34  Identities=38%  Similarity=0.533  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      |+||||+|.||+++|.++++ .|.+|+|||+++..
T Consensus         1 DVvVIG~G~AGl~AA~~Aae-~G~~V~lvek~~~~   34 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAE-AGAKVLLVEKGPRL   34 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHH-TTT-EEEEESSSGG
T ss_pred             CEEEECCCHHHHHHHHHHhh-hcCeEEEEEeeccc
Confidence            89999999999999999998 79999999999873

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK06185 hypothetical protein; Provisional

Probab=98.13  E-value=3.4e-06  Score=74.80  Aligned_cols=37  Identities=32%  Similarity=0.456  Sum_probs=33.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ..++|++|||+|++|+++|..|++ .|.+|+|||+.+.
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~-~G~~v~liE~~~~   40 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLAR-AGVDVTVLEKHAD   40 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCc
Confidence            467999999999999999999998 7999999999854

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.13  E-value=2.6e-06  Score=76.15  Aligned_cols=34  Identities=32%  Similarity=0.475  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +|+||||+|+||+++|..|++ .|.+|+|||+...
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~-~G~~V~llE~~~~   34 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLAS-AGIQTFLLERKPD   34 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHh-CCCcEEEEecCCC
Confidence            699999999999999999997 7999999998643

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.11  E-value=3.8e-06  Score=77.54  Aligned_cols=39  Identities=31%  Similarity=0.502  Sum_probs=35.0

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++.++|+||||+| +|+.+|.++++ .|.+|+|||+.+..
T Consensus         3 ~~d~~~DVvVVG~G-aGl~aA~~aa~-~G~~V~vlEk~~~~   41 (513)
T PRK12837          3 AWDEEVDVLVAGSG-GGVAGAYTAAR-EGLSVALVEATDKF   41 (513)
T ss_pred             CCCCccCEEEECch-HHHHHHHHHHH-CCCcEEEEecCCCC
Confidence            46679999999999 99999999998 79999999988653

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.11  E-value=3.5e-06  Score=73.75  Aligned_cols=34  Identities=41%  Similarity=0.526  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ||+||||+|.+|+++|+.|++ .|.+|+|||++..
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~-~g~~V~l~e~~~~   34 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAK-HGKKTLLLEQFDL   34 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCC
Confidence            799999999999999999998 6999999999753

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK09126 hypothetical protein; Provisional

Probab=98.11  E-value=3.4e-06  Score=74.30  Aligned_cols=35  Identities=34%  Similarity=0.467  Sum_probs=33.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +||+||||+|++|+++|..|++ .|.+|+|+|+...
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~   37 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAG-SGLKVTLIERQPL   37 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHh-CCCcEEEEeCCCc
Confidence            6999999999999999999998 7999999999875

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.11  E-value=3.9e-06  Score=75.64  Aligned_cols=35  Identities=37%  Similarity=0.628  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ++||+||||+|+||..+|.+|++ .|++|+|+|++.
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~-~g~~V~liE~~~   36 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLAS-AGKKVALVEESK   36 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHh-CCCEEEEEecCC
Confidence            36999999999999999999998 799999999975

>PRK06116 glutathione reductase; Validated

Probab=98.10  E-value=3.7e-06  Score=75.98  Aligned_cols=34  Identities=32%  Similarity=0.596  Sum_probs=31.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      .+||+||||+|+||..+|.+|++ .|++|+|+|++
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~-~G~~V~liE~~   36 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAM-YGAKVALIEAK   36 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH-CCCeEEEEecc
Confidence            36999999999999999999998 79999999986

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.09  E-value=3.3e-06  Score=74.83  Aligned_cols=34  Identities=50%  Similarity=0.755  Sum_probs=31.1

Q ss_pred             cEEEECCChHHHHHHHHH--HhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRL--AEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~L--ae~~g~~VLvLEaG~~~   78 (197)
                      ||||||+|+||+++|.+|  ++ .+++|+|||+....
T Consensus         1 DviIvGaGpAGlslA~~l~~~~-~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADAR-PGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcC-CCCEEEEEcCCccc
Confidence            899999999999999999  65 79999999998764

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.09  E-value=4e-06  Score=77.32  Aligned_cols=36  Identities=28%  Similarity=0.552  Sum_probs=33.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +.||+||||+|..|+.+|..|++ .|.+|+|||++..
T Consensus         5 ~~~DVvIIGGGi~G~~~A~~la~-rGl~V~LvEk~d~   40 (508)
T PRK12266          5 ETYDLLVIGGGINGAGIARDAAG-RGLSVLLCEQDDL   40 (508)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence            57999999999999999999998 7999999999754

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.09  E-value=4e-06  Score=77.12  Aligned_cols=37  Identities=30%  Similarity=0.586  Sum_probs=33.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ..+||+||||+|..|+.+|+.|++ .|.+|+|||++..
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~-rG~~V~LlEk~d~   40 (502)
T PRK13369          4 PETYDLFVIGGGINGAGIARDAAG-RGLKVLLCEKDDL   40 (502)
T ss_pred             CcccCEEEECCCHHHHHHHHHHHh-CCCcEEEEECCCC
Confidence            356999999999999999999998 6999999999953

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.09  E-value=4.2e-06  Score=73.15  Aligned_cols=34  Identities=35%  Similarity=0.548  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ||+||||+|.+|+++|++|++ .+++|+|||++..
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~-~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAAR-RGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            699999999999999999998 6999999999754

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.08  E-value=4.6e-06  Score=73.47  Aligned_cols=36  Identities=28%  Similarity=0.373  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +.+|+||||+|++|+++|..|++ .|.+|+|||+.+.
T Consensus         6 ~~~dViIVGaG~~Gl~~A~~L~~-~G~~v~liE~~~~   41 (388)
T PRK07494          6 EHTDIAVIGGGPAGLAAAIALAR-AGASVALVAPEPP   41 (388)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhc-CCCeEEEEeCCCC
Confidence            46899999999999999999997 7999999999754

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.08  E-value=4.2e-06  Score=74.42  Aligned_cols=34  Identities=24%  Similarity=0.411  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +|+||||+|..|+.+|++|++ .|++|+|||++..
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~-~g~~V~vle~~~~   35 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQ-RGYQVTVFDRHRY   35 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            699999999999999999998 6999999999863

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.07  E-value=5.5e-06  Score=77.02  Aligned_cols=40  Identities=25%  Similarity=0.415  Sum_probs=36.3

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .+..++|+||||+|.||+.+|.++++ .|.+|+|||++...
T Consensus        12 ~~~~~~DVlVIG~G~AGl~AAi~aae-~G~~VilleK~~~~   51 (541)
T PRK07804         12 GWRDAADVVVVGSGVAGLTAALAARR-AGRRVLVVTKAALD   51 (541)
T ss_pred             ccccccCEEEECccHHHHHHHHHHHH-cCCeEEEEEccCCC
Confidence            56678999999999999999999998 69999999998754

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.07  E-value=4e-06  Score=75.88  Aligned_cols=33  Identities=24%  Similarity=0.490  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      +||+||||+|+||..+|.++++ .|++|+|+|++
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~-~G~~V~lie~~   34 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAAN-HGAKVAIAEEP   34 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHh-CCCcEEEEecC
Confidence            6999999999999999999998 79999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06370 mercuric reductase; Validated

Probab=98.06  E-value=5.4e-06  Score=75.29  Aligned_cols=35  Identities=43%  Similarity=0.648  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ++||+||||+|+||..+|.+|++ .|++|+|+|++.
T Consensus         4 ~~~DvvVIG~GpaG~~aA~~aa~-~G~~v~lie~~~   38 (463)
T PRK06370          4 QRYDAIVIGAGQAGPPLAARAAG-LGMKVALIERGL   38 (463)
T ss_pred             ccccEEEECCCHHHHHHHHHHHh-CCCeEEEEecCc
Confidence            46999999999999999999998 799999999864

>PRK08013 oxidoreductase; Provisional

Probab=98.06  E-value=5.4e-06  Score=73.78  Aligned_cols=35  Identities=23%  Similarity=0.375  Sum_probs=32.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ++|++|||+|++|+++|..|++ .|.+|+|||+.+.
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~-~G~~v~viE~~~~   37 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQG-SGLRVAVLEQRVP   37 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhh-CCCEEEEEeCCCC
Confidence            6899999999999999999997 7999999999875

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.05  E-value=4.5e-06  Score=75.38  Aligned_cols=34  Identities=38%  Similarity=0.556  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      |+||||+|++|+++|..+++ .|.+|||||+++..
T Consensus         1 DVVVvGgG~aG~~AAi~AAr-~G~~VlLiE~~~~l   34 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAAR-AGAKVLLIEKGGFL   34 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHH-TTS-EEEE-SSSSS
T ss_pred             CEEEECccHHHHHHHHHHHH-CCCEEEEEECCccC
Confidence            89999999999999999998 79999999999875

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.05  E-value=5.1e-06  Score=78.20  Aligned_cols=35  Identities=34%  Similarity=0.437  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+||+||||+|+||+.+|..+|+ .|.+|+|||...
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR-~G~kV~LiE~~~   37 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAAR-MGAKTLLLTHNL   37 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHH-cCCcEEEEeccc
Confidence            46999999999999999999997 799999999975

>PLN02463 lycopene beta cyclase

Probab=98.05  E-value=5.6e-06  Score=75.44  Aligned_cols=37  Identities=22%  Similarity=0.449  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ...||+||||+|+||+++|..|++ .|.+|+|||+.+.
T Consensus        26 ~~~~DVvIVGaGpAGLalA~~La~-~Gl~V~liE~~~~   62 (447)
T PLN02463         26 SRVVDLVVVGGGPAGLAVAQQVSE-AGLSVCCIDPSPL   62 (447)
T ss_pred             ccCceEEEECCCHHHHHHHHHHHH-CCCeEEEeccCcc
Confidence            447999999999999999999997 7999999999754

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.05  E-value=5.3e-06  Score=75.16  Aligned_cols=35  Identities=34%  Similarity=0.570  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+||+||||+|+||..+|.+|++ .|++|+|+|++.
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~-~G~~V~liE~~~   37 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQ-LGLKVAIVEKEK   37 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHH-CCCcEEEEeccc
Confidence            47999999999999999999998 699999999865

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.04  E-value=5.4e-06  Score=73.05  Aligned_cols=34  Identities=29%  Similarity=0.468  Sum_probs=31.2

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      |+||||+|++|+++|.+|++ .|.+|+|||+.+..
T Consensus         1 DviIiGaG~AGl~~A~~la~-~g~~v~liE~~~~~   34 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELAR-PGLRVQLIEPHPPI   34 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHh-CCCeEEEEccCCCC
Confidence            89999999999999999997 79999999987643

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.04  E-value=5.6e-06  Score=75.41  Aligned_cols=35  Identities=34%  Similarity=0.638  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ..||+||||+|+||..+|.+|++ .|++|+|+|++.
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~-~G~~v~lie~~~   37 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQ-LGLKTALVEKGK   37 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence            47999999999999999999998 799999999863

>PLN02697 lycopene epsilon cyclase

Probab=98.04  E-value=9.6e-06  Score=75.37  Aligned_cols=37  Identities=27%  Similarity=0.396  Sum_probs=33.1

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ....||+||||+|+||+++|.+|++ .|++|+|||++.
T Consensus       105 ~~~~~DVvIVGaGPAGLalA~~Lak-~Gl~V~LIe~~~  141 (529)
T PLN02697        105 GDGTLDLVVIGCGPAGLALAAESAK-LGLNVGLIGPDL  141 (529)
T ss_pred             ccCcccEEEECcCHHHHHHHHHHHh-CCCcEEEecCcc
Confidence            3457999999999999999999997 799999999863

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.04  E-value=6.2e-06  Score=74.67  Aligned_cols=36  Identities=22%  Similarity=0.435  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ..||+||||+|++|+.+|.+|++ .|++|+|+|++..
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~-~G~~v~liE~~~~   39 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAK-LGKRVAVIERYRN   39 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHh-CCCEEEEEecccc
Confidence            46999999999999999999998 7999999998643

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.03  E-value=6e-06  Score=72.10  Aligned_cols=33  Identities=42%  Similarity=0.574  Sum_probs=31.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      |+||||+|++|+++|..|++ .|.+|+|+|+.+.
T Consensus         1 dViIvGaG~aGl~~A~~L~~-~G~~v~v~Er~~~   33 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALAR-SGLKIALIEATPA   33 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhc-CCCEEEEEeCCCc
Confidence            89999999999999999998 7999999999975

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR02730 carot_isom carotene isomerase

Probab=98.03  E-value=6e-06  Score=75.61  Aligned_cols=35  Identities=31%  Similarity=0.548  Sum_probs=32.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ||+||||+|.+|+++|..|++ +|.+|+|||+....
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~-~G~~V~vlE~~~~~   35 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAV-KGAKVLVLERYLIP   35 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHH-CCCcEEEEECCCCC
Confidence            799999999999999999998 79999999998664

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.02  E-value=5.8e-06  Score=73.41  Aligned_cols=34  Identities=41%  Similarity=0.650  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +||++|||+|++|+++|..|++ .|.+|+|+|+.+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~-~G~~v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQG-SGLEVLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhc-CCCEEEEEcCCC
Confidence            5899999999999999999997 799999999976

>PRK07045 putative monooxygenase; Reviewed

Probab=98.02  E-value=6.8e-06  Score=72.58  Aligned_cols=37  Identities=32%  Similarity=0.488  Sum_probs=33.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..+|++|||+|++|+++|..|++ .|.+|+|+|+.+..
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~-~G~~v~v~E~~~~~   40 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGA-RGHSVTVVERAARN   40 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHh-cCCcEEEEeCCCcc
Confidence            46899999999999999999998 79999999998754

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.02  E-value=1.1e-05  Score=73.38  Aligned_cols=38  Identities=26%  Similarity=0.315  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~   77 (197)
                      ..++|+||||+|..|+++|++|++. +|.+|+|||++..
T Consensus        22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~   60 (460)
T TIGR03329        22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC   60 (460)
T ss_pred             CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence            3579999999999999999999983 4899999999753

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.02  E-value=6.4e-06  Score=73.06  Aligned_cols=36  Identities=31%  Similarity=0.492  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~   77 (197)
                      .+|++|||+|.+|+++|++|++. ++.+|+|||++..
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~   38 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG   38 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            48999999999999999999972 3899999999864

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.01  E-value=7.7e-06  Score=72.67  Aligned_cols=37  Identities=35%  Similarity=0.466  Sum_probs=32.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCC-CeEEEEecCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRS-WNILLVEAGG   76 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g-~~VLvLEaG~   76 (197)
                      +..||+||||+|..|+++|+.|++..| .+|+|||++.
T Consensus        28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~   65 (407)
T TIGR01373        28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW   65 (407)
T ss_pred             CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence            358999999999999999999997337 5999999975

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.01  E-value=8.4e-06  Score=76.54  Aligned_cols=40  Identities=30%  Similarity=0.478  Sum_probs=36.2

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .+..++|+||||+|.+|+++|.++++ .|.+|+|||++...
T Consensus         7 ~~~~~~DVvVVG~G~AGl~AA~~aae-~G~~VivlEk~~~~   46 (584)
T PRK12835          7 NFDREVDVLVVGSGGGGMTAALTAAA-RGLDTLVVEKSAHF   46 (584)
T ss_pred             CccCcCCEEEECccHHHHHHHHHHHH-CCCcEEEEEcCCCC
Confidence            46679999999999999999999998 79999999998753

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.01  E-value=7.7e-06  Score=74.02  Aligned_cols=34  Identities=38%  Similarity=0.699  Sum_probs=31.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      ++||+||||+|++|..+|.+|++ .|++|+|||++
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~   35 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAK-LGKKVALIEKG   35 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC
Confidence            46999999999999999999998 79999999984

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.01  E-value=7.5e-06  Score=73.12  Aligned_cols=35  Identities=46%  Similarity=0.693  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +|++|||+|++|+++|.+|++ .|.+|+|||++...
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~-~G~~V~viEk~~~i   36 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQ-LNKRVLVVEKRNHI   36 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHh-CCCeEEEEecCCCC
Confidence            799999999999999999997 69999999996543

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.01  E-value=7.2e-06  Score=74.18  Aligned_cols=33  Identities=30%  Similarity=0.589  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      .||+||||+|++|..+|.+|++ .|++|+|||++
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~-~G~~v~lie~~   33 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQ-LGLKVALVEKE   33 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHh-CCCeEEEEecC
Confidence            4899999999999999999998 79999999983

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.00  E-value=7.5e-06  Score=76.20  Aligned_cols=35  Identities=40%  Similarity=0.538  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+||+||||+|..|+.+|+.|++ .|.+|+|||++.
T Consensus         5 ~~~DVvIIGGGi~G~~iA~~La~-rG~~V~LlEk~d   39 (546)
T PRK11101          5 QETDVIIIGGGATGAGIARDCAL-RGLRCILVERHD   39 (546)
T ss_pred             ccccEEEECcCHHHHHHHHHHHH-cCCeEEEEECCC
Confidence            36999999999999999999998 699999999974

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.99  E-value=8.1e-06  Score=68.71  Aligned_cols=33  Identities=36%  Similarity=0.523  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ||++|||+|++|+.+|..|++ .+.+|+|+|++.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~   33 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAAR-ANLKTLIIEGME   33 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHH-CCCCEEEEeccC
Confidence            799999999999999999997 699999999875

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR02053 MerA mercuric reductase

Probab=97.98  E-value=8.5e-06  Score=73.93  Aligned_cols=33  Identities=33%  Similarity=0.553  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ||+||||+|+||..+|.++++ .|++|+|+|++.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~-~g~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAE-LGASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCc
Confidence            799999999999999999998 799999999854

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.98  E-value=8.7e-06  Score=74.20  Aligned_cols=32  Identities=28%  Similarity=0.499  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEA   74 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa   74 (197)
                      +||+||||+|+||..+|.++++ .|++|+|+|+
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~-~G~~V~liE~   34 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQ-LGLKVACVEG   34 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHh-CCCeEEEEec
Confidence            5999999999999999999998 7999999997

>PTZ00367 squalene epoxidase; Provisional

Probab=97.97  E-value=1e-05  Score=75.72  Aligned_cols=35  Identities=34%  Similarity=0.623  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+||+||||+|++|+++|..|++ .|.+|+|||+..
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar-~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSK-QGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHh-cCCEEEEEcccc
Confidence            57999999999999999999998 799999999976

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.96  E-value=1.1e-05  Score=76.47  Aligned_cols=36  Identities=31%  Similarity=0.435  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ++||+||||+|..|+.+|+.|++ .|.+|+|||++..
T Consensus        70 ~~~DVvVIGGGi~Ga~~A~~lA~-rGl~V~LvE~~d~  105 (627)
T PLN02464         70 EPLDVLVVGGGATGAGVALDAAT-RGLRVGLVEREDF  105 (627)
T ss_pred             CccCEEEECCCHHHHHHHHHHHh-CCCEEEEEecccc
Confidence            45999999999999999999998 7999999999843

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.95  E-value=1e-05  Score=71.55  Aligned_cols=34  Identities=26%  Similarity=0.582  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ++|++|||+|++|+++|..|++ .|.+|+|+|+.+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~-~G~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAK-QGRSVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHh-CCCcEEEEcCCC
Confidence            5899999999999999999998 799999999864

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.95  E-value=1.1e-05  Score=71.11  Aligned_cols=34  Identities=41%  Similarity=0.556  Sum_probs=31.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhC---CCeEEEEecC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVR---SWNILLVEAG   75 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~---g~~VLvLEaG   75 (197)
                      ..+|++|||+|++|+++|..|++ .   |.+|+|+|+-
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~-~~~~G~~v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSR-LSHGGLPVALIEAF   38 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhh-cccCCCEEEEEeCC
Confidence            46899999999999999999997 5   9999999994

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.94  E-value=1e-05  Score=71.53  Aligned_cols=35  Identities=29%  Similarity=0.448  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhhC--CCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVR--SWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~--g~~VLvLEaG~~   77 (197)
                      .||+||||+|++|+++|..|++ .  +.+|+|||+.+.
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~-~g~g~~v~liE~~~~   37 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQ-AAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhc-CCCCCEEEEEeCCCc
Confidence            3899999999999999999997 5  499999999864

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.94  E-value=1.1e-05  Score=73.42  Aligned_cols=33  Identities=30%  Similarity=0.537  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      +||+||||+|+||..+|.+|++ .|++|+|+|++
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~-~G~~V~lie~~   36 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQ-LGLKTAVVEKK   36 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHh-CCCeEEEEecC
Confidence            6999999999999999999998 79999999986

>KOG0029|consensus

Probab=97.94  E-value=1.2e-05  Score=74.24  Aligned_cols=40  Identities=28%  Similarity=0.433  Sum_probs=35.9

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ...+..+|||||+|.||+++|+.|.+ .|.+|+|||+..+.
T Consensus        11 ~~~~~~~VIVIGAGiaGLsAArqL~~-~G~~V~VLEARdRv   50 (501)
T KOG0029|consen   11 EAGKKKKVIVIGAGLAGLSAARQLQD-FGFDVLVLEARDRV   50 (501)
T ss_pred             cccCCCcEEEECCcHHHHHHHHHHHH-cCCceEEEeccCCc
Confidence            34568999999999999999999997 79999999998775

>PRK08244 hypothetical protein; Provisional

Probab=97.94  E-value=1.1e-05  Score=73.67  Aligned_cols=36  Identities=31%  Similarity=0.508  Sum_probs=33.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ++|++|||+|++|+++|..|++ .|.+|+|||+.+..
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~-~G~~v~viEr~~~~   37 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELAL-AGVKTCVIERLKET   37 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence            5899999999999999999998 79999999998653

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=97.93  E-value=1.2e-05  Score=74.84  Aligned_cols=35  Identities=37%  Similarity=0.595  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .++|+||||+|.||+++|..+++ .|.+|+|||+++
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~-~G~~VivlEK~~   37 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELAD-AGKRVLLLDQEN   37 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence            57999999999999999999998 799999999988

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=97.93  E-value=1.2e-05  Score=76.02  Aligned_cols=39  Identities=26%  Similarity=0.284  Sum_probs=34.9

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ...++||||||+|.||+.+|.++++ .|.+|+|||++...
T Consensus        26 ~~~~~DVlVIG~G~AGl~AAi~Aa~-~G~~V~lveK~~~~   64 (617)
T PTZ00139         26 IDHTYDAVVVGAGGAGLRAALGLVE-LGYKTACISKLFPT   64 (617)
T ss_pred             cccccCEEEECccHHHHHHHHHHHH-cCCcEEEEeccCCC
Confidence            4458999999999999999999998 79999999998653

>PRK13748 putative mercuric reductase; Provisional

Probab=97.93  E-value=1.2e-05  Score=74.66  Aligned_cols=35  Identities=23%  Similarity=0.412  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ..||+||||+|++|..+|.+|++ .|++|+|||++.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~-~G~~v~lie~~~  131 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVE-QGARVTLIERGT  131 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCc
Confidence            36999999999999999999998 799999999873

>PRK07190 hypothetical protein; Provisional

Probab=97.92  E-value=1.2e-05  Score=73.93  Aligned_cols=36  Identities=28%  Similarity=0.348  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +.+|+||||+|++|+++|..|++ .|.+|+|||+.+.
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar-~Gi~V~llEr~~~   39 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQL-CGLNTVIVDKSDG   39 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHH-cCCCEEEEeCCCc
Confidence            46899999999999999999997 7999999999875

>PLN02661 Putative thiazole synthesis

Probab=97.92  E-value=1.1e-05  Score=71.32  Aligned_cols=37  Identities=32%  Similarity=0.506  Sum_probs=33.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ++|++|||+|++|+++|..|+++++.+|+|||++...
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~  128 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP  128 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence            6899999999999999999997458999999997653

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.92  E-value=1.2e-05  Score=71.39  Aligned_cols=34  Identities=44%  Similarity=0.724  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~   77 (197)
                      |+||||+|+||+.+|.+|++. ++++|+|||+++.
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~   35 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT   35 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            899999999999999999972 4999999999874

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.92  E-value=1.2e-05  Score=70.51  Aligned_cols=34  Identities=41%  Similarity=0.532  Sum_probs=31.5

Q ss_pred             cEEEECCChHHHHHHHHHHhhCC-CeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRS-WNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g-~~VLvLEaG~~~   78 (197)
                      |+||||+|++|+++|..|++ .| .+|+|+|+....
T Consensus         1 dv~IvGaG~aGl~~A~~L~~-~G~~~v~v~E~~~~~   35 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSR-LGKIKIALIEANSPS   35 (382)
T ss_pred             CEEEECccHHHHHHHHHHhc-CCCceEEEEeCCCcc
Confidence            89999999999999999997 79 999999998653

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PLN02576 protoporphyrinogen oxidase

Probab=97.92  E-value=1.8e-05  Score=72.18  Aligned_cols=39  Identities=33%  Similarity=0.396  Sum_probs=34.6

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhC-CCeEEEEecCCCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVR-SWNILLVEAGGDP   78 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~-g~~VLvLEaG~~~   78 (197)
                      .+..+|+||||+|.+|+++|++|++ . |.+|+|||+....
T Consensus         9 ~~~~~~v~IIGaGisGL~aA~~L~~-~~g~~v~vlEa~~rv   48 (496)
T PLN02576          9 AASSKDVAVVGAGVSGLAAAYALAS-KHGVNVLVTEARDRV   48 (496)
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHH-hcCCCEEEEecCCCC
Confidence            3456899999999999999999997 7 8999999998764

>PRK11445 putative oxidoreductase; Provisional

Probab=97.91  E-value=1.1e-05  Score=70.63  Aligned_cols=34  Identities=32%  Similarity=0.586  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .||++|||+|+||+++|..|++ . .+|+|||+.+.
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~-~-~~V~liE~~~~   34 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAG-K-MKVIAIDKKHQ   34 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhc-c-CCEEEEECCCc
Confidence            3899999999999999999997 6 99999998763

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.91  E-value=2.8e-05  Score=73.73  Aligned_cols=41  Identities=34%  Similarity=0.517  Sum_probs=35.4

Q ss_pred             CCCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          37 DQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        37 ~~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ++.++++||+|||+|++|+++|..|++.+|.+|+|||+-+.
T Consensus        27 ~~~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~   67 (634)
T PRK08294         27 ADLPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG   67 (634)
T ss_pred             ccCCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence            44466899999999999999999999624999999998765

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.90  E-value=1.5e-05  Score=72.85  Aligned_cols=35  Identities=29%  Similarity=0.335  Sum_probs=32.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ..||+||||+|++|..+|.+|++ .|++|+|+|+.+
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~-~G~~V~lie~~~   37 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAAD-LGLETVCVERYS   37 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHH-CCCcEEEEecCC
Confidence            36999999999999999999998 799999999864

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.89  E-value=1.5e-05  Score=74.31  Aligned_cols=36  Identities=25%  Similarity=0.422  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ..||+||||+|+||+.+|.+|++ .+++|+|+|++..
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar-~g~~V~liE~~~~   38 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGR-AKLDTLIIEKDDF   38 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHH-CCCCEEEEecCCC
Confidence            36999999999999999999997 7999999998753

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=97.89  E-value=1.8e-05  Score=74.07  Aligned_cols=38  Identities=16%  Similarity=0.263  Sum_probs=34.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..++|+||||+|.+|+++|.++++ .|.+|+|||+....
T Consensus         7 ~~~~DVvVVG~G~aGl~AA~~aa~-~G~~v~llEk~~~~   44 (574)
T PRK12842          7 ELTCDVLVIGSGAGGLSAAITARK-LGLDVVVLEKEPVF   44 (574)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH-cCCeEEEEecCCCC
Confidence            358999999999999999999998 79999999998754

>PRK14694 putative mercuric reductase; Provisional

Probab=97.89  E-value=1.8e-05  Score=72.09  Aligned_cols=35  Identities=23%  Similarity=0.449  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ..||+||||+|+||..+|.+|++ .|++|+|+|++.
T Consensus         5 ~~~dviVIGaG~aG~~aA~~l~~-~g~~v~lie~~~   39 (468)
T PRK14694          5 NNLHIAVIGSGGSAMAAALKATE-RGARVTLIERGT   39 (468)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEEccc
Confidence            47999999999999999999998 799999999874

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=97.89  E-value=1.5e-05  Score=71.66  Aligned_cols=34  Identities=29%  Similarity=0.329  Sum_probs=31.5

Q ss_pred             cEEEECCChHHHHHHHHHHhhCC-CeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRS-WNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g-~~VLvLEaG~~~   78 (197)
                      |+||||+|.+|+++|.++++ .| .+|+|||+.+..
T Consensus         1 DVvVVG~G~AGl~AA~~aa~-~G~~~V~vlEk~~~~   35 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKK-AGAANVVLLEKMPVI   35 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHH-cCCccEEEEecCCCC
Confidence            89999999999999999998 79 999999998764

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.87  E-value=1.8e-05  Score=73.86  Aligned_cols=38  Identities=29%  Similarity=0.576  Sum_probs=34.4

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +..++|+||||+|.+|+++|.++++ .|.+|+|||+...
T Consensus         3 ~d~~~DvvIiG~G~aGl~aA~~~a~-~G~~v~liEk~~~   40 (557)
T PRK12844          3 WDETYDVVVVGSGGGGMCAALAAAD-SGLEPLIVEKQDK   40 (557)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            4568999999999999999999998 6999999998754

>PRK06184 hypothetical protein; Provisional

Probab=97.87  E-value=1.8e-05  Score=72.61  Aligned_cols=37  Identities=41%  Similarity=0.599  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +++|++|||+|++|+++|..|++ .|.+|+|||+.+..
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~-~Gi~v~viE~~~~~   38 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELAR-RGVSFRLIEKAPEP   38 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            36899999999999999999998 79999999997653

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=97.87  E-value=1.7e-05  Score=73.07  Aligned_cols=37  Identities=24%  Similarity=0.522  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~   77 (197)
                      ..+|+||||+|..|+++|+.|++. ++.+|+|||+...
T Consensus         4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~   41 (494)
T PRK05257          4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG   41 (494)
T ss_pred             ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence            479999999999999999999973 6889999999754

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.87  E-value=1.7e-05  Score=70.35  Aligned_cols=35  Identities=26%  Similarity=0.379  Sum_probs=32.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .+|++|||+|++|+++|..|++ .|.+|+|+|+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~-~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHL-AGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHh-cCCCEEEEEcCCc
Confidence            5899999999999999999998 7999999999874

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.87  E-value=1.8e-05  Score=72.27  Aligned_cols=35  Identities=34%  Similarity=0.618  Sum_probs=32.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -|+||||+|.+|+++|..|++ .|.+|+|||+....
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~-~G~~v~vlE~~~~~   36 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAK-RGYRVTLLEQHAQP   36 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence            589999999999999999998 79999999998654

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.87  E-value=1.7e-05  Score=72.46  Aligned_cols=33  Identities=33%  Similarity=0.638  Sum_probs=31.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA   74 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa   74 (197)
                      ++||+||||+|+||..+|.++++ .|++|+|||+
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~-~g~~v~lie~   35 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQ-LGLKVACIEA   35 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHh-CCCeEEEEec
Confidence            36999999999999999999998 7999999998

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.86  E-value=2e-05  Score=74.28  Aligned_cols=38  Identities=29%  Similarity=0.381  Sum_probs=33.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~   77 (197)
                      ..++|+||||+|.||+++|.++++. +|.+|+|||++..
T Consensus         9 ~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~   47 (608)
T PRK06854          9 EVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI   47 (608)
T ss_pred             eeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence            3479999999999999999999972 2899999999864

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=1.9e-05  Score=68.60  Aligned_cols=35  Identities=34%  Similarity=0.578  Sum_probs=30.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCe-EEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWN-ILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~-VLvLEaG~   76 (197)
                      +.||+||||+|+||+.+|-.+++ .+++ ++|+|.+.
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r-~~l~~~li~~~~~   37 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAAR-AGLKVVLILEGGE   37 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHH-cCCCcEEEEecCC
Confidence            57999999999999999999997 7888 77777753

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=97.86  E-value=1.8e-05  Score=72.72  Aligned_cols=35  Identities=31%  Similarity=0.574  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~   77 (197)
                      +|++|||+|.+|+++|++|++. ++.+|+|||+...
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~   36 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA   36 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence            6999999999999999999983 5899999999753

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PLN02268 probable polyamine oxidase

Probab=97.85  E-value=2e-05  Score=70.68  Aligned_cols=35  Identities=29%  Similarity=0.491  Sum_probs=32.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPS   79 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~   79 (197)
                      ++||||+|.+|+.+|++|.+ .|++|+|||+..+..
T Consensus         2 ~VvVIGaGisGL~aA~~L~~-~g~~v~vlEa~~r~G   36 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHD-ASFKVTLLESRDRIG   36 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCCCCC
Confidence            79999999999999999997 799999999988763

>PRK14727 putative mercuric reductase; Provisional

Probab=97.85  E-value=2.9e-05  Score=70.99  Aligned_cols=38  Identities=21%  Similarity=0.340  Sum_probs=33.9

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ..+..||+||||+|++|..+|.+|++ .|++|+|+|++.
T Consensus        12 ~~~~~~dvvvIG~G~aG~~~a~~~~~-~g~~v~~ie~~~   49 (479)
T PRK14727         12 RSKLQLHVAIIGSGSAAFAAAIKAAE-HGARVTIIEGAD   49 (479)
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence            34457999999999999999999998 799999999873

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=97.85  E-value=2.1e-05  Score=68.86  Aligned_cols=37  Identities=35%  Similarity=0.534  Sum_probs=33.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..+|+||||+|.+|+.+|+.|++ .|.+|+|+|++...
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~-~G~~V~vie~~~~~   39 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAE-RGADVTVLEAGEAG   39 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHH-cCCEEEEEecCccC
Confidence            57999999999999999999998 68899999998753

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.85  E-value=1.9e-05  Score=74.26  Aligned_cols=37  Identities=27%  Similarity=0.382  Sum_probs=33.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|+||||+|.||+.+|.++++ .|.+|+|||++...
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~-~G~~V~lleK~~~~   42 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQ-SGQSCALLSKVFPT   42 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHH-cCCcEEEEEccCCC
Confidence            47999999999999999999998 79999999998653

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=97.85  E-value=1.8e-05  Score=70.29  Aligned_cols=33  Identities=42%  Similarity=0.567  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      .+|++|||+|++|+++|..|++ .|.+|.|||+-
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~-~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALAR-AGLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHh-CCCcEEEEccC
Confidence            5899999999999999999998 79999999998

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.85  E-value=1.9e-05  Score=70.32  Aligned_cols=33  Identities=33%  Similarity=0.537  Sum_probs=31.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      .+|++|||+|++|+++|..|++ .|.+|+|||+.
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~-~G~~v~viE~~   36 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKE-SDLRIAVIEGQ   36 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHh-CCCEEEEEcCC
Confidence            5899999999999999999997 79999999986

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.85  E-value=1.6e-05  Score=71.73  Aligned_cols=34  Identities=38%  Similarity=0.668  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhh---CCCeEEEEecCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEV---RSWNILLVEAGG   76 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~---~g~~VLvLEaG~   76 (197)
                      ||+||||+|++|+++|..|++.   .|.+|+|||+.+
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~   37 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD   37 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence            7999999999999999999962   589999999953

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.84  E-value=2.3e-05  Score=72.65  Aligned_cols=39  Identities=28%  Similarity=0.480  Sum_probs=35.2

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +.+.++|++|||+|++|+++|..|++ .|.+|+|||+.+.
T Consensus        19 ~~~~~~dVlIVGaGpaGl~lA~~L~~-~G~~v~viE~~~~   57 (547)
T PRK08132         19 DDPARHPVVVVGAGPVGLALAIDLAQ-QGVPVVLLDDDDT   57 (547)
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEeCCCC
Confidence            44578999999999999999999997 7999999999874

>PRK07208 hypothetical protein; Provisional

Probab=97.84  E-value=2.2e-05  Score=71.23  Aligned_cols=37  Identities=30%  Similarity=0.439  Sum_probs=33.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +..|+||||+|.+|+++|++|++ .|++|+|+|+....
T Consensus         3 ~~~~vvIiGaGisGL~aA~~L~~-~g~~v~v~E~~~~~   39 (479)
T PRK07208          3 NKKSVVIIGAGPAGLTAAYELLK-RGYPVTVLEADPVV   39 (479)
T ss_pred             CCCcEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence            46799999999999999999998 69999999997654

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.84  E-value=2e-05  Score=74.78  Aligned_cols=39  Identities=28%  Similarity=0.330  Sum_probs=34.7

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +..++||||||+|.||+.+|.++++ .|.+|+|||++...
T Consensus        47 ~~~~~DVlVIG~G~AGl~AAl~Aae-~G~~VilveK~~~~   85 (635)
T PLN00128         47 VDHTYDAVVVGAGGAGLRAAIGLSE-HGFNTACITKLFPT   85 (635)
T ss_pred             eeeecCEEEECccHHHHHHHHHHHh-cCCcEEEEEcCCCC
Confidence            3457999999999999999999998 79999999998653

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.84  E-value=2.1e-05  Score=74.02  Aligned_cols=36  Identities=25%  Similarity=0.335  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|+||||+|.||+.+|.++++ .|.+|+|||++..
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~-~G~~V~lveK~~~   46 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAE-AGLKTACITKVFP   46 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHH-cCCcEEEEEccCC
Confidence            47999999999999999999998 7899999999864

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.84  E-value=1.9e-05  Score=69.67  Aligned_cols=33  Identities=21%  Similarity=0.401  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +|++|||+|++|+++|..|++ .|.+|+|+|+.+
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~-~G~~v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQ-KGIKTTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHc-CCCeEEEecCCC
Confidence            799999999999999999997 799999999874

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.84  E-value=1.9e-05  Score=72.67  Aligned_cols=32  Identities=22%  Similarity=0.490  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEA   74 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa   74 (197)
                      .||+||||+|+||..+|.++++ .|++|+|||+
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~-~G~~V~lie~   36 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAA-HGKKVALFDY   36 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHh-CCCeEEEEec
Confidence            5999999999999999999998 7999999996

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=97.84  E-value=2.3e-05  Score=72.36  Aligned_cols=35  Identities=34%  Similarity=0.561  Sum_probs=31.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHHh-hCCCeEEEEec
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAE-VRSWNILLVEA   74 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEa   74 (197)
                      .+.+|+||||+|.+|+++|+.|++ .++.+|+|||+
T Consensus         4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr   39 (497)
T PRK13339          4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVER   39 (497)
T ss_pred             CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence            357899999999999999999998 35899999999

>PLN02676 polyamine oxidase

Probab=97.83  E-value=4.4e-05  Score=70.22  Aligned_cols=37  Identities=38%  Similarity=0.469  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~~   78 (197)
                      ..+|+||||+|.+|+.+|.+|++ .|. +|+|||+..+.
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~-~g~~~v~vlE~~~~~   62 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSE-AGIEDILILEATDRI   62 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH-cCCCcEEEecCCCCC
Confidence            36799999999999999999998 687 69999998765

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.82  E-value=2.4e-05  Score=73.04  Aligned_cols=38  Identities=34%  Similarity=0.534  Sum_probs=34.4

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +.+++|+||||+|.+|+++|.++++ .|.+|+|||+.+.
T Consensus         4 ~~~~~DvvVvG~G~aG~~aA~~aa~-~G~~v~llEk~~~   41 (557)
T PRK07843          4 TVQEYDVVVVGSGAAGMVAALTAAH-RGLSTVVVEKAPH   41 (557)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            4458999999999999999999998 7999999999764

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.82  E-value=2.1e-05  Score=73.48  Aligned_cols=39  Identities=28%  Similarity=0.422  Sum_probs=34.3

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +...++||||||+|.||+++|.+++  .|.+|+|||++...
T Consensus         5 ~~~~e~DVlVVG~G~AGl~AAi~A~--~G~~V~lieK~~~~   43 (553)
T PRK07395          5 ILPSQFDVLVVGSGAAGLYAALCLP--SHLRVGLITKDTLK   43 (553)
T ss_pred             cccccCCEEEECccHHHHHHHHHhh--cCCCEEEEEccCCC
Confidence            5667899999999999999999986  38899999998753

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.82  E-value=2.8e-05  Score=73.08  Aligned_cols=36  Identities=28%  Similarity=0.423  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|+||||+|.||+.+|.++++ .|.+|+|||++..
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~-~G~~V~vleK~~~   46 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLAR-AGLSVAVLSKVFP   46 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHH-CCCcEEEEeccCC
Confidence            47999999999999999999998 7999999999754

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.82  E-value=2.5e-05  Score=73.94  Aligned_cols=36  Identities=28%  Similarity=0.382  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++||||||+|.||+++|.++++ .|.+|+|||++..
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae-~G~~V~lieK~~~   42 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARE-RGLRVAVVCKSLF   42 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHH-CCCCEEEEeccCC
Confidence            47999999999999999999998 7999999999864

>PRK06996 hypothetical protein; Provisional

Probab=97.82  E-value=2.4e-05  Score=69.63  Aligned_cols=37  Identities=46%  Similarity=0.634  Sum_probs=32.6

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCC----CeEEEEecCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRS----WNILLVEAGG   76 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g----~~VLvLEaG~   76 (197)
                      .++++|++|||+|++|+++|..|++ .|    ++|+|+|+..
T Consensus         8 ~~~~~dv~IvGgGpaG~~~A~~L~~-~g~~~g~~v~l~e~~~   48 (398)
T PRK06996          8 AAPDFDIAIVGAGPVGLALAGWLAR-RSATRALSIALIDARE   48 (398)
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHhc-CCCcCCceEEEecCCC
Confidence            4568999999999999999999997 44    5899999975

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.82  E-value=2.1e-05  Score=73.52  Aligned_cols=36  Identities=22%  Similarity=0.444  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|+||||+|.||+.+|.++++ .|.+|+|||++..
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae-~G~~V~lveK~~~   39 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIAS-AGFKVAVISKVFP   39 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHH-CCCcEEEEEccCC
Confidence            46899999999999999999998 7999999999864

>PRK06834 hypothetical protein; Provisional

Probab=97.81  E-value=2.4e-05  Score=71.93  Aligned_cols=35  Identities=31%  Similarity=0.504  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .+|+||||+|++|+++|..|++ .|.+|+|||+.+.
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~-~G~~v~vlEr~~~   37 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELAL-AGVDVAIVERRPN   37 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            5899999999999999999998 7999999998764

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.81  E-value=2.2e-05  Score=74.56  Aligned_cols=34  Identities=44%  Similarity=0.671  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+|+||||+|.+|+++|+.|++ .|.+|+|||++.
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~-~G~~V~VlE~~~  293 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALAR-RGWQVTLYEADE  293 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHH-CCCeEEEEecCC
Confidence            5899999999999999999998 699999999985

>PLN02507 glutathione reductase

Probab=97.81  E-value=2.2e-05  Score=72.32  Aligned_cols=33  Identities=27%  Similarity=0.405  Sum_probs=31.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA   74 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa   74 (197)
                      .+||+||||+|++|..+|.++++ .|++|+|+|+
T Consensus        24 ~~yDvvVIG~GpaG~~aA~~a~~-~G~~V~liE~   56 (499)
T PLN02507         24 YDFDLFVIGAGSGGVRAARFSAN-FGAKVGICEL   56 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence            47999999999999999999998 7999999995

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.81  E-value=2.5e-05  Score=69.45  Aligned_cols=35  Identities=23%  Similarity=0.413  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .+|++|||+|++|+++|..|++ .|.+|+|+|+.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~-~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHK-AGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence            5799999999999999999998 7999999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.80  E-value=3.5e-05  Score=72.16  Aligned_cols=39  Identities=26%  Similarity=0.366  Sum_probs=34.1

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .+.++||+||||+| +|.++|.+.++ .|.+|+|||+.+..
T Consensus        12 ~~d~e~DvvvvG~G-~G~~aA~~a~~-~G~~v~v~Ek~~~~   50 (564)
T PRK12845         12 VRDTTVDLLVVGSG-TGMAAALAAHE-LGLSVLIVEKSSYV   50 (564)
T ss_pred             CCCceeCEEEECCc-HHHHHHHHHHH-CCCcEEEEecCCCC
Confidence            45569999999999 89999999987 79999999997654

>PRK06847 hypothetical protein; Provisional

Probab=97.80  E-value=2.9e-05  Score=67.93  Aligned_cols=36  Identities=28%  Similarity=0.302  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +..|++|||+|++|+++|..|++ .|.+|+|+|+...
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~-~g~~v~v~E~~~~   38 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRR-AGIAVDLVEIDPE   38 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence            35799999999999999999997 7999999998764

>PRK07588 hypothetical protein; Provisional

Probab=97.79  E-value=2.6e-05  Score=68.88  Aligned_cols=34  Identities=32%  Similarity=0.369  Sum_probs=31.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      |++|||+|++|+++|..|++ .|.+|+|+|+.+..
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~-~G~~v~v~E~~~~~   35 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRR-YGHEPTLIERAPEL   35 (391)
T ss_pred             eEEEECccHHHHHHHHHHHH-CCCceEEEeCCCCc
Confidence            79999999999999999998 79999999998653

>PRK06126 hypothetical protein; Provisional

Probab=97.79  E-value=3.4e-05  Score=71.44  Aligned_cols=37  Identities=35%  Similarity=0.478  Sum_probs=33.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +.++||+|||+|++|+++|..|++ .|.+|+|+|+.+.
T Consensus         5 ~~~~~VlIVGaGpaGL~~Al~La~-~G~~v~viEr~~~   41 (545)
T PRK06126          5 TSETPVLIVGGGPVGLALALDLGR-RGVDSILVERKDG   41 (545)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCCC
Confidence            457999999999999999999998 7999999998764

>PRK08275 putative oxidoreductase; Provisional

Probab=97.79  E-value=2.7e-05  Score=72.60  Aligned_cols=37  Identities=32%  Similarity=0.530  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~   77 (197)
                      .++|+||||+|.||+++|.++++. ++.+|+|||++..
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~   45 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV   45 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            579999999999999999999973 3789999999875

>PRK10262 thioredoxin reductase; Provisional

Probab=97.79  E-value=3.3e-05  Score=66.65  Aligned_cols=36  Identities=22%  Similarity=0.290  Sum_probs=32.3

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      ..+.+|++|||+|+||+.+|..|++ .+++|+++|+.
T Consensus         3 ~~~~~~vvIIGgGpaGl~aA~~l~~-~g~~~~~ie~~   38 (321)
T PRK10262          3 TTKHSKLLILGSGPAGYTAAVYAAR-ANLQPVLITGM   38 (321)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHH-CCCCeEEEEee
Confidence            3468999999999999999999998 69999999864

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=97.79  E-value=2.8e-05  Score=69.04  Aligned_cols=33  Identities=18%  Similarity=0.363  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      |+||||+|.+|+++|.+|++ .+.+|+|||++..
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~-~g~~V~vle~~~~   34 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQ-AGHEVTVIDRQPG   34 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHH-CCCEEEEEeCCCc
Confidence            79999999999999999998 6999999999853

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=97.79  E-value=2.7e-05  Score=69.64  Aligned_cols=34  Identities=32%  Similarity=0.450  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCC--CeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRS--WNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g--~~VLvLEaG~~~   78 (197)
                      ++||||+|.+|+++|++|++ .|  ++|+|+|+....
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~-~G~~~~V~vlEa~~~~   37 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHK-KGPDADITLLEASDRL   37 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHH-hCCCCCEEEEEcCCCC
Confidence            58999999999999999997 56  899999997654

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.79  E-value=2.5e-05  Score=71.80  Aligned_cols=34  Identities=21%  Similarity=0.438  Sum_probs=31.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhC-CCeEEEEecC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVR-SWNILLVEAG   75 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~-g~~VLvLEaG   75 (197)
                      .+||+||||+|++|..+|.++++ . |++|+|||++
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~-~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAAT-LYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHH-hcCCEEEEEecc
Confidence            47999999999999999999997 5 8999999973

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.78  E-value=3.1e-05  Score=71.72  Aligned_cols=38  Identities=32%  Similarity=0.443  Sum_probs=34.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ...+|++|||+|++|+++|..|++ .|.+|+|||+....
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~-~G~~v~v~Er~~~~   45 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQ-YGVRVLVLERWPTL   45 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence            457999999999999999999998 79999999998753

>PLN02815 L-aspartate oxidase

Probab=97.78  E-value=3.2e-05  Score=72.85  Aligned_cols=38  Identities=26%  Similarity=0.474  Sum_probs=33.4

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -..++|+||||+|.||+.+|.++++ .+ +|+|||++...
T Consensus        26 ~~~~~DVlVVG~G~AGl~AAl~Aae-~G-~VvlleK~~~~   63 (594)
T PLN02815         26 STKYFDFLVIGSGIAGLRYALEVAE-YG-TVAIITKDEPH   63 (594)
T ss_pred             cccccCEEEECccHHHHHHHHHHhh-CC-CEEEEECCCCC
Confidence            3447999999999999999999998 67 89999998764

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=97.77  E-value=4e-05  Score=70.74  Aligned_cols=36  Identities=31%  Similarity=0.508  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~   76 (197)
                      .+||+||||+|..|+++|+.|++. +..+|+|||+..
T Consensus        44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~   80 (497)
T PTZ00383         44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS   80 (497)
T ss_pred             CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence            579999999999999999999984 347999999985

>PRK06175 L-aspartate oxidase; Provisional

Probab=97.77  E-value=2.4e-05  Score=70.88  Aligned_cols=36  Identities=36%  Similarity=0.452  Sum_probs=32.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|+||||+|.||+.+|.+++  .+.+|+|||++...
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~--~G~~V~lleK~~~~   38 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR--KDLKILMVSKGKLN   38 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc--cCCCEEEEecCCCC
Confidence            4789999999999999999974  48999999998764

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.77  E-value=3e-05  Score=69.87  Aligned_cols=36  Identities=28%  Similarity=0.384  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhhC----CCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVR----SWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~----g~~VLvLEaG~~~   78 (197)
                      ..|+||||+|.+|+++|++|++ .    |.+|+|+|+....
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~-~~~~~g~~v~vlE~~~r~   41 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEK-EIPELPVELTLVEASDRV   41 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHh-cCCCCCCcEEEEEcCCcC
Confidence            3689999999999999999997 5    8999999998764

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK06753 hypothetical protein; Provisional

Probab=97.77  E-value=3.1e-05  Score=67.80  Aligned_cols=34  Identities=26%  Similarity=0.404  Sum_probs=31.6

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      |+||||+|++|+++|..|++ .|.+|+|+|+.+..
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~-~g~~v~v~E~~~~~   35 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQE-QGHEVKVFEKNESV   35 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCcc
Confidence            79999999999999999998 79999999998753

>PLN02546 glutathione reductase

Probab=97.77  E-value=2.9e-05  Score=72.64  Aligned_cols=32  Identities=22%  Similarity=0.363  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEA   74 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa   74 (197)
                      +||+||||+|++|..+|.++++ .|++|+|+|+
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~-~G~~V~liE~  110 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASN-FGASAAVCEL  110 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence            6999999999999999999998 7999999995

>PRK07233 hypothetical protein; Provisional

Probab=97.76  E-value=3.4e-05  Score=68.43  Aligned_cols=34  Identities=38%  Similarity=0.517  Sum_probs=31.6

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ++||||+|.+|+++|+.|++ .|++|+|||+....
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~-~G~~v~vlE~~~~~   34 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAK-RGHEVTVFEADDQL   34 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHH-CCCcEEEEEeCCCC
Confidence            58999999999999999998 69999999999865

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.76  E-value=3.2e-05  Score=70.61  Aligned_cols=34  Identities=29%  Similarity=0.484  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +|+||||+|.||+++|.++++ .|.+|+|||++..
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae-~G~~V~liek~~~   35 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAK-KGFDVTIIGPGIK   35 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            699999999999999999998 7999999999854

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=97.75  E-value=4.6e-05  Score=71.46  Aligned_cols=40  Identities=40%  Similarity=0.602  Sum_probs=36.2

Q ss_pred             CCCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          37 DQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        37 ~~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ..+..++|+||||+|.+|+.+|..+++ .|.+|+|||+...
T Consensus        11 ~~~~~~~dvvvvG~G~aG~~aa~~~~~-~g~~v~l~ek~~~   50 (578)
T PRK12843         11 ERWDAEFDVIVIGAGAAGMSAALFAAI-AGLKVLLVERTEY   50 (578)
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            467779999999999999999999998 7999999998754

>TIGR02734 crtI_fam phytoene desaturase

Probab=97.75  E-value=3e-05  Score=70.94  Aligned_cols=33  Identities=36%  Similarity=0.556  Sum_probs=30.8

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +||||||.+|+++|.+|++ .|++|+|||+....
T Consensus         1 vvVIGaG~~GL~aA~~La~-~G~~V~VlE~~~~~   33 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAA-AGIPVTVVEQRDKP   33 (502)
T ss_pred             CEEECcCHHHHHHHHHHHh-CCCcEEEEECCCCC
Confidence            6999999999999999998 79999999998775

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.74  E-value=3.6e-05  Score=73.10  Aligned_cols=36  Identities=33%  Similarity=0.551  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|+||||+|.||+++|.++++ .|.+|+|||+...
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae-~G~~VilieK~~~   69 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGE-LGYNVKVFCYQDS   69 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHH-cCCcEEEEecCCC
Confidence            37899999999999999999998 7999999997543

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.73  E-value=4.6e-05  Score=60.52  Aligned_cols=32  Identities=34%  Similarity=0.541  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      |+||||+|+||..+|.+|++ ++.+|+++|+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~-~~~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELAR-PGAKVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHH-TTSEEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhc-CCCeEEEEeccc
Confidence            79999999999999999996 899999998765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=97.73  E-value=3.6e-05  Score=71.75  Aligned_cols=33  Identities=33%  Similarity=0.354  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      |+||||+|.||+++|..+++ .|.+|+|||++..
T Consensus         1 DVlVVG~G~AGl~AA~~aae-~G~~V~lleK~~~   33 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAK-AGLNTAVISKVYP   33 (566)
T ss_pred             CEEEECccHHHHHHHHHHHH-CCCcEEEEeccCC
Confidence            89999999999999999998 6999999999864

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.72  E-value=4.4e-05  Score=67.22  Aligned_cols=38  Identities=34%  Similarity=0.570  Sum_probs=34.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..++|+||||+|.+|+++|.+|++ +|++|++||.-+..
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~-aG~~V~ildQEgeq   40 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELAD-AGKRVLILDQEGEQ   40 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHh-cCceEEEEcccccc
Confidence            358999999999999999999997 89999999987664

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=97.72  E-value=5.7e-05  Score=70.84  Aligned_cols=39  Identities=26%  Similarity=0.318  Sum_probs=35.3

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .+..++|+||||+|.+|+++|..+++ .|.+|+|||+...
T Consensus         8 ~~~~~~dvvvvG~G~aG~~aa~~~~~-~g~~v~~iek~~~   46 (581)
T PRK06134          8 PPDLECDVLVIGSGAAGLSAAVTAAW-HGLKVIVVEKDPV   46 (581)
T ss_pred             CCCCccCEEEECcCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence            46679999999999999999999998 7999999998754

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.72  E-value=4.2e-05  Score=69.29  Aligned_cols=34  Identities=35%  Similarity=0.541  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +||+||||+|.+|+++|.+|++ .|.+|+|||++.
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~-~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAE-AGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHH-CCCcEEEEECCC
Confidence            5899999999999999999998 799999999985

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.72  E-value=4e-05  Score=70.03  Aligned_cols=35  Identities=40%  Similarity=0.703  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+||+||||+|+||-.+|.|+++ .|++|+++|++.
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~-~G~kvalvE~~~   37 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQ-LGLKVALVEKGE   37 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHh-CCCCEEEEeecC
Confidence            57999999999999999999998 687899999995

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.72  E-value=3.9e-05  Score=73.05  Aligned_cols=33  Identities=27%  Similarity=0.524  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      +||+||||+|++|..+|.++++ .|++|+|+|.+
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~-~G~kV~lie~~  148 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAME-RGLKVIIFTGD  148 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCC
Confidence            7999999999999999999998 79999999965

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.72  E-value=3.5e-05  Score=72.13  Aligned_cols=36  Identities=31%  Similarity=0.448  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~   77 (197)
                      ++|+||||+|.||+.+|.++++. ++.+|+|||++..
T Consensus         3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~   39 (575)
T PRK05945          3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP   39 (575)
T ss_pred             cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence            68999999999999999999972 2589999999865

>PRK07236 hypothetical protein; Provisional

Probab=97.72  E-value=4.5e-05  Score=67.42  Aligned_cols=36  Identities=17%  Similarity=0.318  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ...|+||||+|++|+++|..|++ .|.+|+|+|+.+.
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~   40 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRR-AGWDVDVFERSPT   40 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence            46899999999999999999998 7999999999864

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.71  E-value=3.8e-05  Score=73.16  Aligned_cols=37  Identities=24%  Similarity=0.305  Sum_probs=33.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|+||||+|.||+.+|.++++ .|.+|+|||+.+..
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~Aae-~G~~VivleK~~~~   40 (657)
T PRK08626          4 IYTDALVIGAGLAGLRVAIAAAQ-RGLDTIVLSLVPAK   40 (657)
T ss_pred             eeccEEEECccHHHHHHHHHHHH-cCCCEEEEeCCCCC
Confidence            47899999999999999999998 79999999988653

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.71  E-value=3.8e-05  Score=71.89  Aligned_cols=37  Identities=35%  Similarity=0.458  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCC---CeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRS---WNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g---~~VLvLEaG~~~   78 (197)
                      .++|+||||+|.||+++|.++++ .|   .+|+|||++...
T Consensus         4 ~~~DVlVVG~G~AGl~AA~~Aa~-~G~~~~~V~lleK~~~~   43 (577)
T PRK06069          4 LKYDVVIVGSGLAGLRAAVAAAE-RSGGKLSVAVVSKTQPM   43 (577)
T ss_pred             eecCEEEECccHHHHHHHHHHHH-hCCCCCcEEEEEcccCC
Confidence            36899999999999999999998 56   899999998653

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.70  E-value=4.2e-05  Score=71.92  Aligned_cols=36  Identities=25%  Similarity=0.244  Sum_probs=32.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .+|+||||+|.||+.+|.++++ .|.+|+|||++...
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~-~G~~V~lieK~~~~   38 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAE-AGVHVDLFSLVPVK   38 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHH-cCCcEEEEEccCCC
Confidence            4699999999999999999998 79999999987653

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.68  E-value=4.3e-05  Score=71.04  Aligned_cols=35  Identities=34%  Similarity=0.438  Sum_probs=31.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|+||||+|.||+.+|.++ + .|.+|+|||++..
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~A-~-~G~~VilleK~~~   40 (543)
T PRK06263          6 MITDVLIIGSGGAGARAAIEA-E-RGKNVVIVSKGLF   40 (543)
T ss_pred             eccCEEEECccHHHHHHHHHH-h-cCCCEEEEEccCC
Confidence            468999999999999999998 7 6999999999864

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.68  E-value=5.4e-05  Score=66.77  Aligned_cols=35  Identities=29%  Similarity=0.410  Sum_probs=32.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ..|++|||+|++|+++|..|++ .|.+|+|+|+.+.
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~-~g~~v~v~Er~~~   38 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALAR-QGIKVKLLEQAAE   38 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHh-CCCcEEEEeeCcc
Confidence            5799999999999999999997 7999999999865

>KOG2415|consensus

Probab=97.68  E-value=4.5e-05  Score=68.74  Aligned_cols=38  Identities=37%  Similarity=0.557  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHh-----hCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAE-----VRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae-----~~g~~VLvLEaG~~~   78 (197)
                      +++|++|||+|+||+.+|.||-|     +...+|.|||++...
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~  117 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEV  117 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeecccc
Confidence            47999999999999999999865     346799999998765

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.67  E-value=5.6e-05  Score=60.33  Aligned_cols=32  Identities=38%  Similarity=0.689  Sum_probs=25.2

Q ss_pred             EEECCChHHHHHHHHHHhhCCCe-EEEEecCCCC
Q psy6708          46 IIVGAGTAGSILASRLAEVRSWN-ILLVEAGGDP   78 (197)
Q Consensus        46 IIVGsG~aG~~~A~~Lae~~g~~-VLvLEaG~~~   78 (197)
                      ||||+|++|+++|.+|.+ .|.+ |+|||++...
T Consensus         1 ~IIGaG~aGl~~a~~l~~-~g~~~v~v~e~~~~~   33 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLE-RGIDPVVVLERNDRP   33 (203)
T ss_dssp             EEE--SHHHHHHHHHHHH-TT---EEEEESSSSS
T ss_pred             CEECcCHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Confidence            799999999999999998 6888 9999998653

...

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.65  E-value=7.6e-05  Score=67.53  Aligned_cols=38  Identities=37%  Similarity=0.531  Sum_probs=35.1

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .+..|+||||+|.+|+++|++|.+ .|.+|+|||+....
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~k-aG~~v~ilEar~r~   42 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKK-AGYQVQILEARDRV   42 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhh-cCcEEEEEeccCCc
Confidence            568999999999999999999997 89999999998764

>PRK07538 hypothetical protein; Provisional

Probab=97.65  E-value=5.9e-05  Score=67.33  Aligned_cols=33  Identities=30%  Similarity=0.532  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      |++|||+|++|+++|..|++ .|.+|+|+|+.+.
T Consensus         2 dV~IVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~   34 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQ-RGIEVVVFEAAPE   34 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHh-CCCcEEEEEcCCc
Confidence            89999999999999999997 7999999999864

>PRK12839 hypothetical protein; Provisional

Probab=97.64  E-value=6.8e-05  Score=70.30  Aligned_cols=36  Identities=28%  Similarity=0.462  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|+||||+|.+|+++|..+++ .+.+|+|||++..
T Consensus         7 ~~~dv~ViG~G~aG~~aa~~~~~-~g~~v~~iek~~~   42 (572)
T PRK12839          7 HTYDVVVVGSGAGGLSAAVAAAY-GGAKVLVVEKAST   42 (572)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            47999999999999999999998 7999999999765

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.63  E-value=6.3e-05  Score=69.09  Aligned_cols=33  Identities=24%  Similarity=0.549  Sum_probs=30.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      +||+||||+|++|..+|.++++ .|++|+|||+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~-~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAAD-YGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHH-CCCeEEEEecc
Confidence            5899999999999999999998 79999999973

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR00551 nadB L-aspartate oxidase

Probab=97.62  E-value=6.6e-05  Score=68.86  Aligned_cols=35  Identities=23%  Similarity=0.447  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ++|+||||+|.||+.+|.++++ .+. |+|||++...
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~-~G~-V~lleK~~~~   36 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALAD-QGR-VIVLSKAPVT   36 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHh-CCC-EEEEEccCCC
Confidence            5799999999999999999998 677 9999999653

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.62  E-value=8e-05  Score=73.22  Aligned_cols=37  Identities=35%  Similarity=0.538  Sum_probs=33.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ..++|+||||+|.||+.+|.++++ .|.+|+|||++..
T Consensus        11 ~~~~DVlVVG~G~AGl~AAl~Aa~-~G~~V~lleK~~~   47 (897)
T PRK13800         11 RLDCDVLVIGGGTAGTMAALTAAE-HGANVLLLEKAHV   47 (897)
T ss_pred             eeecCEEEECcCHHHHHHHHHHHH-CCCeEEEEecccc
Confidence            357999999999999999999997 7999999999875

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.61  E-value=6.8e-05  Score=69.66  Aligned_cols=36  Identities=36%  Similarity=0.573  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++||||||+|.||+.+|.++++ . .+|+|||++...
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~-~-~~VilveK~~~~   42 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAE-H-RRVAVLSKGPLS   42 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHH-C-CCEEEEeccCCC
Confidence            57999999999999999999997 4 799999998753

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.60  E-value=6.8e-05  Score=70.36  Aligned_cols=35  Identities=29%  Similarity=0.324  Sum_probs=31.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|+||||+|.||+.+|.++++ . .+|+|||++..
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~-~-~~VilleK~~~   38 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGP-R-ARTAVLTKLYP   38 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHh-C-CCEEEEeCCCC
Confidence            36899999999999999999997 4 89999999864

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=97.57  E-value=9.3e-05  Score=67.10  Aligned_cols=38  Identities=26%  Similarity=0.490  Sum_probs=33.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHh-hCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAE-VRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~~~   78 (197)
                      +.||++|||+|..|+++|+.|++ .++.+|+|||+-...
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~   40 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGV   40 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcc
Confidence            47999999999999999999998 344999999997664

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.56  E-value=8.4e-05  Score=69.78  Aligned_cols=38  Identities=32%  Similarity=0.281  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~   78 (197)
                      .++|+||||+|.||+.+|.++++. ++.+|+|||++...
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~   41 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM   41 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence            368999999999999999999973 35799999998653

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.53  E-value=0.00011  Score=66.69  Aligned_cols=35  Identities=34%  Similarity=0.296  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -|++|||+|++|+.+|..|++ .|.+|.|+|..+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr-~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAK-RGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHh-CCCcEEEEEccCcc
Confidence            489999999999999999998 79999999976543

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.53  E-value=0.0001  Score=69.73  Aligned_cols=34  Identities=32%  Similarity=0.418  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHh---hCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAE---VRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae---~~g~~VLvLEaG~~   77 (197)
                      ||||||||.||+.+|.++++   ..|.+|+|||++..
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence            89999999999999999982   26899999999875

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.53  E-value=9.1e-05  Score=69.58  Aligned_cols=37  Identities=27%  Similarity=0.310  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~   78 (197)
                      ++|+||||+|.||+++|.++++. ++.+|+|||++...
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~   40 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPM   40 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence            68999999999999999999973 36899999998653

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.53  E-value=0.00013  Score=67.47  Aligned_cols=34  Identities=26%  Similarity=0.433  Sum_probs=31.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA   74 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa   74 (197)
                      ...||++|||+|+||+.+|.+|++ .|++|+|+|.
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~-~G~~v~li~~  242 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAAR-KGIRTGIVAE  242 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEec
Confidence            347999999999999999999997 7999999986

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.52  E-value=9.2e-05  Score=68.44  Aligned_cols=35  Identities=26%  Similarity=0.516  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ++|+||||+|.||+.+|.++++  +.+|+|||++...
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~--g~~V~lveK~~~~   37 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH--EYNVIIITKKTKR   37 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc--CCCEEEEeccCCC
Confidence            7899999999999999999875  7899999998753

>PRK05868 hypothetical protein; Validated

Probab=97.52  E-value=0.00011  Score=64.90  Aligned_cols=34  Identities=24%  Similarity=0.382  Sum_probs=31.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      |++|||+|++|+++|..|++ .|.+|.|+|+.+..
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~-~G~~v~viE~~~~~   36 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGR-HGYSVTMVERHPGL   36 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCCC
Confidence            79999999999999999998 79999999998653

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.51  E-value=0.00013  Score=66.46  Aligned_cols=39  Identities=26%  Similarity=0.331  Sum_probs=34.8

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCe-EEEEecCCCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWN-ILLVEAGGDP   78 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~-VLvLEaG~~~   78 (197)
                      ..+.+|++|||+|++|.++|++|.+ .+.. ++++|+....
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~-~g~~~~~i~Ek~~~~   44 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQ-AGVPDFVIFEKRDDV   44 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHH-cCCCcEEEEEccCCc
Confidence            4568999999999999999999998 6887 9999999753

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.51  E-value=0.00012  Score=66.22  Aligned_cols=35  Identities=23%  Similarity=0.353  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhh-----CCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEV-----RSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~-----~g~~VLvLEaG~~~   78 (197)
                      ++||||+|.+|+++|++|++.     .+.+|+|||+..+.
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~   42 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYL   42 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCc
Confidence            589999999999999999973     24799999998765

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.50  E-value=0.00013  Score=67.45  Aligned_cols=34  Identities=26%  Similarity=0.459  Sum_probs=31.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA   74 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa   74 (197)
                      ...||++|||+|+||+.+|.+|++ .|.+|+|+|.
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~-~G~~v~li~~  243 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAAR-KGLRTAMVAE  243 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEec
Confidence            457999999999999999999997 7999999975

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PLN02568 polyamine oxidase

Probab=97.50  E-value=0.00014  Score=67.73  Aligned_cols=37  Identities=32%  Similarity=0.530  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCC-----CeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRS-----WNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g-----~~VLvLEaG~~~   78 (197)
                      +..|+||||+|.+|+++|.+|++ .+     .+|+|+|+....
T Consensus         4 ~~~~v~iiGaG~aGl~aa~~L~~-~g~~~~~~~v~v~E~~~~~   45 (539)
T PLN02568          4 KKPRIVIIGAGMAGLTAANKLYT-SSAANDMFELTVVEGGDRI   45 (539)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh-cccccCCceEEEEeCCCCc
Confidence            35799999999999999999997 45     899999998765

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.50  E-value=0.00014  Score=62.24  Aligned_cols=34  Identities=35%  Similarity=0.440  Sum_probs=31.5

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +++|||+|.+|+++|..|++ .|.+|+|+|+|.-.
T Consensus         3 siaIVGaGiAGl~aA~~L~~-aG~~vtV~eKg~Gv   36 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALRE-AGREVTVFEKGRGV   36 (331)
T ss_pred             cEEEEccchHHHHHHHHHHh-cCcEEEEEEcCCCc
Confidence            68999999999999999998 89999999999653

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.49  E-value=0.00012  Score=73.81  Aligned_cols=37  Identities=27%  Similarity=0.316  Sum_probs=33.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..+|+||||+|.||+++|.+.++ .|.+|+|||+++..
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae-~Ga~VivlEK~~~~  444 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAAS-CGAQVILLEKEAKL  444 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEEccCCC
Confidence            36999999999999999999998 79999999998754

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=97.48  E-value=0.00016  Score=66.19  Aligned_cols=37  Identities=22%  Similarity=0.390  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ...+++|||+|++|+++|.+|.+ .|.+|+|+|++...
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~-~G~~v~vfE~~~~v   45 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRR-EGHTVVVFEREKQV   45 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHh-cCCeEEEEecCCCC
Confidence            35789999999999999999998 69999999998653

>TIGR02731 phytoene_desat phytoene desaturase

Probab=97.47  E-value=0.00015  Score=65.40  Aligned_cols=34  Identities=32%  Similarity=0.335  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +++|||+|.+|+++|.+|++ .|++|+|+|+.+..
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~-~G~~v~vlE~~~~~   34 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLAD-AGHTPIVLEARDVL   34 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence            48999999999999999998 79999999998753

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.43  E-value=0.00018  Score=65.15  Aligned_cols=34  Identities=44%  Similarity=0.619  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ||++|||+|.+|+++|.+|++ .+++|+|||+|..
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~-~g~~v~lv~~~~~   34 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAE-AGKKCAIIAAGQS   34 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHH-CCCCEEEEeCCCc
Confidence            799999999999999999997 6999999999964

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.42  E-value=0.00017  Score=67.57  Aligned_cols=38  Identities=29%  Similarity=0.440  Sum_probs=34.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..+||+||||+|.||+.+|.++++ .+.+|+|||+....
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~-~g~~V~l~~K~~~~   41 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAE-AGLKVALLSKAPPK   41 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHh-cCCcEEEEEccccC
Confidence            358999999999999999999998 78999999998764

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.42  E-value=0.00016  Score=64.96  Aligned_cols=28  Identities=39%  Similarity=0.540  Sum_probs=25.1

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEE
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLV   72 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvL   72 (197)
                      |+||||+|.|||.+|..+|+ .|.+|+|+
T Consensus         1 DViVVGgG~AG~eAA~aaAr-~G~~V~Li   28 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAAR-MGAKVLLI   28 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHH-TT--EEEE
T ss_pred             CEEEECCCHHHHHHHHHHHH-CCCCEEEE
Confidence            89999999999999999998 79999999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.40  E-value=0.00021  Score=63.59  Aligned_cols=34  Identities=35%  Similarity=0.560  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      =+++|||+|++|+++|..|++ .|.+|.|+|+.+.
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~-~G~~V~i~E~~~~   36 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAA-RGWAVTIIEKAQE   36 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCc
Confidence            368999999999999999997 7999999998764

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.39  E-value=0.00021  Score=64.95  Aligned_cols=33  Identities=24%  Similarity=0.477  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ++||||+|+||..+|.++++ .|++|+|||++..
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~-~g~~V~lie~~~~   34 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQ-NGKNVTLIDEADL   34 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHh-CCCcEEEEECCcc
Confidence            68999999999999999998 7999999999753

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.39  E-value=0.00023  Score=66.11  Aligned_cols=37  Identities=38%  Similarity=0.631  Sum_probs=34.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +++|+||||+|..|+-+|..++. .|.+|+|+|++..-
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~-RGl~v~LvE~~D~A   47 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAG-RGLKVALVEKGDLA   47 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHh-CCCeEEEEecCccc
Confidence            79999999999999999999997 79999999999764

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.38  E-value=0.00021  Score=71.00  Aligned_cols=37  Identities=30%  Similarity=0.436  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..+|++|||+|+||+.+|..|++ .+.+|+|+|+++..
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar-~G~~V~liD~~~~~  198 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAAR-AGARVILVDEQPEA  198 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCCC
Confidence            36899999999999999999997 79999999997653

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK07846 mycothione reductase; Reviewed

Probab=97.36  E-value=0.00021  Score=64.99  Aligned_cols=32  Identities=41%  Similarity=0.675  Sum_probs=27.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +||+||||+|++|..+|.+  + .|++|+|+|++.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~-~G~~V~lie~~~   32 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--F-ADKRIAIVEKGT   32 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--H-CCCeEEEEeCCC
Confidence            4899999999999988876  2 499999999864

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.34  E-value=0.00026  Score=62.12  Aligned_cols=36  Identities=28%  Similarity=0.434  Sum_probs=33.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +||++|||+|.||..+|.+|.+ .|++|.+|-.|...
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~-~Gk~c~iv~~gQsA   37 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQ-AGKRCAIVNRGQSA   37 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHh-cCCcEEEEeCChhh
Confidence            6999999999999999999998 79999999999863

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.33  E-value=0.00038  Score=66.45  Aligned_cols=36  Identities=17%  Similarity=0.412  Sum_probs=33.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+..+++|||+|++|+++|..|++ .|.+|.|+|+.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r-~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKK-KGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHh-cCCeEEEEeccc
Confidence            467999999999999999999998 799999999975

>TIGR03452 mycothione_red mycothione reductase

Probab=97.32  E-value=0.00025  Score=64.44  Aligned_cols=32  Identities=38%  Similarity=0.612  Sum_probs=27.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +||+||||+|++|..+|.+  + .|++|+|+|++.
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~-~g~~V~lie~~~   33 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--F-ADKRIAIVEKGT   33 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--H-CCCeEEEEeCCC
Confidence            5999999999999888655  3 599999999854

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.30  E-value=0.00027  Score=65.38  Aligned_cols=35  Identities=26%  Similarity=0.275  Sum_probs=31.1

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ..++|+||||+|.||+++|.+++   +.+|+|||++..
T Consensus         7 ~~~~DVlVIG~G~AGl~AAl~Aa---~~~V~lleK~~~   41 (513)
T PRK07512          7 ILTGRPVIVGGGLAGLMAALKLA---PRPVVVLSPAPL   41 (513)
T ss_pred             CCcCCEEEECchHHHHHHHHHhC---cCCEEEEECCCC
Confidence            35799999999999999999986   359999999975

>TIGR00275 flavoprotein, HI0933 family

Probab=97.30  E-value=0.00018  Score=64.46  Aligned_cols=32  Identities=34%  Similarity=0.521  Sum_probs=29.3

Q ss_pred             EEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          46 IIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        46 IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ||||+|++|+++|.+|++ .+++|+|||+.+..
T Consensus         1 vIIGgG~aGl~aAi~aa~-~G~~V~llEk~~~~   32 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAR-EGLSVLLLEKNKKI   32 (400)
T ss_pred             CEEEEeHHHHHHHHHHHh-cCCcEEEEecCccc
Confidence            699999999999999998 79999999998753

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.30  E-value=0.00032  Score=63.79  Aligned_cols=33  Identities=30%  Similarity=0.404  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      |++|||+|.+|+.+|..|++ .|.+|+|+|..+.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr-~G~~V~LiE~rp~   34 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQ-AGVPVILYEMRPE   34 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHh-CCCcEEEEecccc
Confidence            79999999999999999998 7999999997654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.28  E-value=0.00032  Score=66.22  Aligned_cols=33  Identities=33%  Similarity=0.422  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ||+||||+|++|+.+|..+++ .+.+|+|||...
T Consensus         1 yDViVIGaG~AGl~aA~ala~-~G~~v~Lie~~~   33 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAAR-MGAKTLLLTLNL   33 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHH-CCCCEEEEeccc
Confidence            799999999999999999997 799999999864

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.27  E-value=0.00045  Score=68.64  Aligned_cols=36  Identities=22%  Similarity=0.293  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ...+++|||+|+||+.+|..|++ .|++|+|+|+.+.
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr-~G~~VTV~Ek~~~  571 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLAR-AGHPVTVFEKKEK  571 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH-CCCeEEEEecccc
Confidence            46899999999999999999998 7999999998754

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12831 putative oxidoreductase; Provisional

Probab=97.27  E-value=0.00046  Score=63.08  Aligned_cols=36  Identities=25%  Similarity=0.421  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ...|++|||+|+||+.+|.+|++ .|++|+|+|+...
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~-~G~~V~v~e~~~~  174 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAK-MGYDVTIFEALHE  174 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence            46799999999999999999998 7999999998653

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=97.24  E-value=0.00042  Score=63.06  Aligned_cols=39  Identities=31%  Similarity=0.498  Sum_probs=30.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPS   79 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~   79 (197)
                      +++||+||+|.|..-|++|..||. .|++||.||+.....
T Consensus         2 ~~~yDviI~GTGl~esila~als~-~GkkVLhiD~n~yYG   40 (438)
T PF00996_consen    2 DEEYDVIILGTGLTESILAAALSR-SGKKVLHIDRNDYYG   40 (438)
T ss_dssp             -SBESEEEE--SHHHHHHHHHHHH-TT--EEEE-SSSSSC
T ss_pred             CccceEEEECCCcHHHHHHHHHHh-cCCEEEecCCCCCcC
Confidence            469999999999999999999997 799999999998864

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>KOG2820|consensus

Probab=97.21  E-value=0.00033  Score=61.55  Aligned_cols=36  Identities=44%  Similarity=0.418  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +..|+||||+|..|+.+|++|++ .+.++|+||+=+.
T Consensus         6 ~~~~viiVGAGVfG~stAyeLaK-~g~killLeqf~~   41 (399)
T KOG2820|consen    6 KSRDVIIVGAGVFGLSTAYELAK-RGDKILLLEQFPL   41 (399)
T ss_pred             cceeEEEEcccccchHHHHHHHh-cCCeEEEEeccCC
Confidence            57999999999999999999998 6899999999765

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.19  E-value=0.00036  Score=65.87  Aligned_cols=31  Identities=35%  Similarity=0.575  Sum_probs=29.3

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +||||+|.||+++|.++++ .|.+|+|||++.
T Consensus         1 VlVVG~G~AGl~AAl~Aae-~G~~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAE-LGYHVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHH-cCCCEEEEEecC
Confidence            6899999999999999998 799999999987

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.17  E-value=0.00051  Score=61.29  Aligned_cols=34  Identities=38%  Similarity=0.481  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHhhCC-CeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRS-WNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g-~~VLvLEaG~~~   78 (197)
                      .++|||+|++|+++|..|++ .| .+|.|+|+.+..
T Consensus         2 ~V~IiGgGiaGla~A~~L~~-~g~~~v~v~Er~~~~   36 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCK-HSHLNVQLFEAAPAF   36 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHh-cCCCCEEEEecCCcC
Confidence            58999999999999999997 56 599999998653

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.17  E-value=0.00066  Score=62.03  Aligned_cols=37  Identities=24%  Similarity=0.334  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ...+++|||+|++|+.+|..|++ .|++|+|+|+.+..
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~-~G~~V~vie~~~~~  178 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLAR-AGHKVTVFERADRI  178 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHh-CCCcEEEEecCCCC
Confidence            46799999999999999999997 79999999987643

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=0.0005  Score=63.11  Aligned_cols=34  Identities=35%  Similarity=0.448  Sum_probs=31.7

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .|+|+|+|.||+.+|+.|++ +|.+|.|+|++...
T Consensus         2 rVai~GaG~AgL~~a~~La~-~g~~vt~~ea~~~~   35 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELAD-AGYDVTLYEARDRL   35 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHh-CCCceEEEeccCcc
Confidence            37999999999999999998 89999999999875

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.12  E-value=0.00046  Score=63.00  Aligned_cols=34  Identities=41%  Similarity=0.636  Sum_probs=27.0

Q ss_pred             cEEEECCChHHHHHHHHHHhhCC---CeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRS---WNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g---~~VLvLEaG~~~   78 (197)
                      ||||||+|+||.++|..|++. .   .+|+|||+....
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~-~~~~~~v~lie~~~~~   37 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARA-GPDALSVTLIESPDIP   37 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHH-CTCSSEEEEEE-SSS-
T ss_pred             CEEEECCCHHHHHHHHHHHHh-CCCCcEEEEEecCCCC
Confidence            799999999999999999983 4   899999998654

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.12  E-value=0.00065  Score=61.75  Aligned_cols=36  Identities=31%  Similarity=0.374  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ..++++|||+|++|+.+|..|++ .|++|+|+|+...
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~-~G~~V~vie~~~~  167 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAK-AGHSVTVFEALHK  167 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            46899999999999999999997 7999999998653

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PLN02612 phytoene desaturase

Probab=97.12  E-value=0.00071  Score=63.39  Aligned_cols=35  Identities=34%  Similarity=0.432  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ..+++|||+|.+|+++|++|++ .|.+|+|+|+...
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~-~g~~~~~~e~~~~  127 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLAD-AGHKPILLEARDV  127 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHh-cCCeEEEEecCCC
Confidence            5789999999999999999997 7999999999754

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.10  E-value=0.0013  Score=45.41  Aligned_cols=33  Identities=30%  Similarity=0.442  Sum_probs=30.6

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ++|||+|..|+-+|..|++ .+++|.|||+.+..
T Consensus         2 vvViGgG~ig~E~A~~l~~-~g~~vtli~~~~~~   34 (80)
T PF00070_consen    2 VVVIGGGFIGIELAEALAE-LGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEESSSHHHHHHHHHHHH-TTSEEEEEESSSSS
T ss_pred             EEEECcCHHHHHHHHHHHH-hCcEEEEEeccchh
Confidence            6899999999999999998 79999999999764

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.10  E-value=0.00079  Score=65.50  Aligned_cols=38  Identities=26%  Similarity=0.538  Sum_probs=34.1

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ....++||||+|.+|+++|..|++ .|.+|+|+|+....
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~-~g~~v~v~E~~~r~  273 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLS-MGFKVVVLEGRARP  273 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH-CCCcEEEEeccccC
Confidence            457899999999999999999997 79999999997654

>PLN02529 lysine-specific histone demethylase 1

Probab=97.08  E-value=0.00081  Score=64.89  Aligned_cols=38  Identities=34%  Similarity=0.489  Sum_probs=34.1

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ....|+||||+|++|+.+|..|++ .|.+|+|+|+..+.
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~-~g~~v~v~E~~~~~  195 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLS-FGFKVVVLEGRNRP  195 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHH-cCCcEEEEecCccC
Confidence            357899999999999999999997 79999999997654

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.07  E-value=0.00076  Score=61.51  Aligned_cols=32  Identities=25%  Similarity=0.422  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      |+||||+|++|..+|.++++ .+.+|+|+|++.
T Consensus         3 ~vvviG~G~~G~~~a~~~~~-~g~~v~~~e~~~   34 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQ-LGADVTVIERDG   34 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence            79999999999999999998 699999999875

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.05  E-value=0.00079  Score=61.68  Aligned_cols=34  Identities=29%  Similarity=0.311  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +++|||+|.+|+++|.+|++ .|.+|.|+|+....
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~-~G~~v~v~E~~~~~   34 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVD-AGHEVDIYESRSFI   34 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHH-CCCcEEEEEecCCC
Confidence            47999999999999999997 79999999997654

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.01  E-value=0.0012  Score=62.71  Aligned_cols=36  Identities=25%  Similarity=0.333  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ...+++|||+|+||+.+|..|++ .|.+|+|+|+...
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~-~G~~V~V~E~~~~  361 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLAR-NGVAVTVYDRHPE  361 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence            45799999999999999999998 7999999998754

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.99  E-value=0.0011  Score=60.30  Aligned_cols=36  Identities=31%  Similarity=0.520  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ...+++|||+|++|+.+|..|++ .+++|+|+|+...
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~-~g~~V~lie~~~~  174 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLAR-KGYDVTIFEARDK  174 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh-CCCeEEEEccCCC
Confidence            35799999999999999999997 6999999998865

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=96.97  E-value=0.0011  Score=66.05  Aligned_cols=37  Identities=24%  Similarity=0.194  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ...+++|||||+||+.+|..|++ .|++|+|+|++...
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~-~G~~VtV~E~~~~~  465 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVK-YGVDVTVYEALHVV  465 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCC
Confidence            35799999999999999999998 69999999997643

>PLN02852 ferredoxin-NADP+ reductase

Probab=96.95  E-value=0.0018  Score=59.88  Aligned_cols=39  Identities=23%  Similarity=0.361  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHHh-hCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAE-VRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~~~   78 (197)
                      .....++|||||+||+.+|..|++ ..+++|.|+|+-+..
T Consensus        24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p   63 (491)
T PLN02852         24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP   63 (491)
T ss_pred             CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence            345689999999999999999985 358999999998754

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=96.94  E-value=0.001  Score=60.73  Aligned_cols=34  Identities=32%  Similarity=0.424  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCC--CeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRS--WNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g--~~VLvLEaG~~~   78 (197)
                      -++|||+|.+|+.+|++|.+ .+  ..|.|+|++.+.
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k-~~p~~~i~lfE~~~r~   37 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQK-AGPDVEVTLFEADDRV   37 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHH-hCCCCcEEEEecCCCC
Confidence            37999999999999999998 45  899999999765

>KOG3855|consensus

Probab=96.94  E-value=0.00092  Score=60.18  Aligned_cols=38  Identities=34%  Similarity=0.620  Sum_probs=32.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhC---CCeEEEEecCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVR---SWNILLVEAGGD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~---g~~VLvLEaG~~   77 (197)
                      ++.||+||||+|+.|..+|..|..++   .+||++||+|..
T Consensus        34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s   74 (481)
T KOG3855|consen   34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS   74 (481)
T ss_pred             cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence            44899999999999999999997643   579999999943

>KOG1399|consensus

Probab=96.94  E-value=0.00097  Score=60.92  Aligned_cols=36  Identities=28%  Similarity=0.421  Sum_probs=33.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .-+++|||+|+||+++|..|.+ .|+.|.++|+....
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~-~g~~v~vfEr~~~i   41 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLR-EGHEVVVFERTDDI   41 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHH-CCCCceEEEecCCc
Confidence            4589999999999999999997 79999999999875

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.93  E-value=0.0011  Score=65.78  Aligned_cols=36  Identities=31%  Similarity=0.344  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ...+++|||||+||+++|..|++ .|++|.|+|+...
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar-~G~~VtVfE~~~~  340 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAV-EGFPVTVFEAFHD  340 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH-CCCeEEEEeeCCC
Confidence            35789999999999999999997 7999999998754

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=96.93  E-value=0.001  Score=64.50  Aligned_cols=34  Identities=21%  Similarity=0.357  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~   77 (197)
                      +++|||+|+||+++|..|++. +|.+|+|+|+.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            689999999999999999973 3899999999865

>KOG0685|consensus

Probab=96.92  E-value=0.0014  Score=59.85  Aligned_cols=41  Identities=32%  Similarity=0.406  Sum_probs=35.5

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPS   79 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~   79 (197)
                      ..+..-++|||+|.||+.+|.||-++....|+|+|+..+..
T Consensus        18 ~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG   58 (498)
T KOG0685|consen   18 ARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIG   58 (498)
T ss_pred             ccCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccC
Confidence            34456899999999999999999976678999999998864

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.89  E-value=0.0014  Score=63.30  Aligned_cols=35  Identities=29%  Similarity=0.472  Sum_probs=31.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ...+++|||+|+||+.+|..|++ .|.+|+|+|+..
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~-~G~~V~v~e~~~  464 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAK-RGYDVTVFEALH  464 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH-CCCeEEEEecCC
Confidence            46799999999999999999997 799999999854

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=96.87  E-value=0.0019  Score=60.63  Aligned_cols=38  Identities=26%  Similarity=0.212  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHhh---CCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEV---RSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~---~g~~VLvLEaG~~~   78 (197)
                      +.-+++|||||.||+++|..|+++   +|.+|.|+|+....
T Consensus        21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~   61 (576)
T PRK13977         21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVP   61 (576)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCC
Confidence            356899999999999999999984   47899999998764

>KOG2665|consensus

Probab=96.86  E-value=0.00086  Score=58.75  Aligned_cols=40  Identities=23%  Similarity=0.365  Sum_probs=35.5

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHh-hCCCeEEEEecCCCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAE-VRSWNILLVEAGGDP   78 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~~~   78 (197)
                      ..+.||.||||+|..|++.|++|+- .++++|+|||+-...
T Consensus        45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l   85 (453)
T KOG2665|consen   45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL   85 (453)
T ss_pred             ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence            4568999999999999999999984 579999999998764

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=96.84  E-value=0.0019  Score=64.17  Aligned_cols=36  Identities=25%  Similarity=0.311  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ..-+++|||+|+||+.+|..|++ .|++|.|+|+.+.
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar-~G~~VtV~Ek~~~  573 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLAR-AGHPVTVFEREEN  573 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH-cCCeEEEEecccc
Confidence            45689999999999999999998 7999999998754

>KOG2614|consensus

Probab=96.84  E-value=0.0016  Score=58.54  Aligned_cols=35  Identities=29%  Similarity=0.471  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +-++||||+|.+|++.|.-|++ .|.+|+|+|+-.+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r-~G~~v~VlE~~e~   36 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHR-KGIDVVVLESRED   36 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHH-cCCeEEEEeeccc
Confidence            4589999999999999999998 7999999999544

>PLN02487 zeta-carotene desaturase

Probab=96.78  E-value=0.0025  Score=59.94  Aligned_cols=36  Identities=25%  Similarity=0.316  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..+++|||+|.+|+.+|.+|++ .|++|+|+|+.+..
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~-~g~~v~i~E~~~~~  110 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLD-QGHEVDIYESRPFI  110 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHh-CCCeeEEEecCCCC
Confidence            4699999999999999999997 79999999997654

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=96.78  E-value=0.0011  Score=59.79  Aligned_cols=30  Identities=30%  Similarity=0.417  Sum_probs=27.9

Q ss_pred             EECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          47 IVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        47 IVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      |||+|.+|+++|.++++ .|.+|+|||+.+.
T Consensus         1 VVG~G~AGl~AA~~Aa~-~Ga~V~vlEK~~~   30 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARR-AGASVLLLEAAPR   30 (432)
T ss_pred             CCcccHHHHHHHHHHHh-CCCcEEEEeCCCC
Confidence            79999999999999998 7999999999874

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PLN03000 amine oxidase

Probab=96.73  E-value=0.0022  Score=62.88  Aligned_cols=37  Identities=27%  Similarity=0.463  Sum_probs=33.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ...+++|||+|.+|+.+|..|.+ .+.+|+|+|+..+.
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~-~G~~V~VlE~~~ri  219 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMR-FGFKVTVLEGRKRP  219 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHH-CCCcEEEEEccCcC
Confidence            46899999999999999999997 79999999998765

>KOG0405|consensus

Probab=96.71  E-value=0.0028  Score=56.25  Aligned_cols=35  Identities=29%  Similarity=0.538  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ..|||.|||+|.+|...|+|-++ .|.+|.|+|...
T Consensus        19 k~fDylvIGgGSGGvasARrAa~-~GAkv~l~E~~f   53 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAAS-HGAKVALCELPF   53 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHh-cCceEEEEecCC
Confidence            48999999999999999999887 799999999983

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.69  E-value=0.0025  Score=55.90  Aligned_cols=36  Identities=28%  Similarity=0.367  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..+++|||+|++|+.+|.+|++ .+++|.|+|+.+..
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~~~   53 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLAC-LGYEVHVYDKLPEP   53 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            3589999999999999999997 69999999998654

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.67  E-value=0.0025  Score=60.70  Aligned_cols=36  Identities=25%  Similarity=0.376  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ...+++|||+|++|+.+|..|++ .|.+|+|+|+...
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~-~G~~Vtv~e~~~~  227 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLR-KGHDVTIFDANEQ  227 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            35799999999999999999998 7999999998765

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.64  E-value=0.0017  Score=60.33  Aligned_cols=36  Identities=33%  Similarity=0.450  Sum_probs=32.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +.||+||||+|-||+-+|...|+ .|.+++||=-..+
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaAR-mG~ktlLlT~~~d   38 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAAR-MGAKTLLLTLNLD   38 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhc-cCCeEEEEEcCCC
Confidence            46999999999999999999997 7999999977655

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.63  E-value=0.0039  Score=57.06  Aligned_cols=36  Identities=22%  Similarity=0.327  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ...+++|||+|++|+.+|..|++ .|.+|+|+|+.+.
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~-~G~~V~i~e~~~~  175 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILAR-AGVQVVVFDRHPE  175 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence            46799999999999999999997 6999999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG4716|consensus

Probab=96.63  E-value=0.0023  Score=56.66  Aligned_cols=35  Identities=20%  Similarity=0.395  Sum_probs=31.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      -.||.||||+|.+|+++|.+-+. -|.+|++|+.=.
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~-~G~kV~~lDfV~   52 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAAD-LGAKVACLDFVK   52 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHh-cCCcEEEEeecc
Confidence            37999999999999999999997 699999998753

>PLN02976 amine oxidase

Probab=96.60  E-value=0.0032  Score=64.47  Aligned_cols=40  Identities=28%  Similarity=0.400  Sum_probs=34.4

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +....+|++|||+|++|+.+|.+|++ .|.+|+|||+....
T Consensus       689 ~~~~~~dV~IIGAG~AGLaAA~~L~~-~G~~V~VlEa~~~v  728 (1713)
T PLN02976        689 DSVDRKKIIVVGAGPAGLTAARHLQR-QGFSVTVLEARSRI  728 (1713)
T ss_pred             CcCCCCcEEEECchHHHHHHHHHHHH-CCCcEEEEeeccCC
Confidence            34456899999999999999999997 79999999996543

>KOG2853|consensus

Probab=96.59  E-value=0.0026  Score=56.41  Aligned_cols=42  Identities=31%  Similarity=0.486  Sum_probs=35.8

Q ss_pred             CCCCCcccEEEECCChHHHHHHHHHHh---hCCCeEEEEecCCCC
Q psy6708          37 DQWPQEFDFIIVGAGTAGSILASRLAE---VRSWNILLVEAGGDP   78 (197)
Q Consensus        37 ~~~~~~~D~IIVGsG~aG~~~A~~Lae---~~g~~VLvLEaG~~~   78 (197)
                      ++.+.++|++|||+|-.|+.+|.-|-+   +.+.+|+|+|+..-.
T Consensus        81 ~~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty  125 (509)
T KOG2853|consen   81 EVFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY  125 (509)
T ss_pred             cccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence            455678999999999999999998865   456999999998764

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.49  E-value=0.005  Score=58.53  Aligned_cols=36  Identities=22%  Similarity=0.265  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ...+++|||+|++|+.+|..|++ .|.+|.|+|+.+.
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~-~G~~Vtv~e~~~~  344 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILAR-AGVQVDVFDRHPE  344 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH-cCCcEEEEeCCCC
Confidence            46789999999999999999997 7999999999875

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=96.49  E-value=0.0038  Score=57.12  Aligned_cols=38  Identities=26%  Similarity=0.534  Sum_probs=34.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHh-hCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAE-VRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~~~   78 (197)
                      ++||+|+||+|..|++++..|++ ++..+|.|+|+-...
T Consensus         2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~   40 (488)
T PF06039_consen    2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSV   40 (488)
T ss_pred             CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcc
Confidence            58999999999999999999998 688999999998764

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=96.47  E-value=0.005  Score=56.65  Aligned_cols=35  Identities=23%  Similarity=0.337  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ..+++|||+|++|+.+|..|++ .+.+|.|+|+.+.
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~-~g~~V~v~e~~~~  177 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNR-AGHTVTVFEREDR  177 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence            4699999999999999999997 7999999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>KOG2960|consensus

Probab=96.45  E-value=0.0008  Score=56.06  Aligned_cols=35  Identities=34%  Similarity=0.471  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHh-hCCCeEEEEecCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAE-VRSWNILLVEAGG   76 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~   76 (197)
                      +-|+||||+|.+|+.+|+.++. +++++|.+||+.-
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SV  111 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSV  111 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeee
Confidence            4699999999999999999984 6899999999853

>PTZ00188 adrenodoxin reductase; Provisional

Probab=96.37  E-value=0.005  Score=56.98  Aligned_cols=37  Identities=22%  Similarity=0.301  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..-++|||||+||+.+|.+|....+++|.|+|+-+..
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p   75 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP   75 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            4569999999999999998764469999999998875

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=96.34  E-value=0.0054  Score=55.16  Aligned_cols=35  Identities=23%  Similarity=0.323  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~   78 (197)
                      .++|||+|+||+.+|.+|++. ++.+|+|+|+.+..
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~   37 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV   37 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence            589999999999999999873 35699999998753

>KOG1335|consensus

Probab=96.32  E-value=0.0045  Score=55.52  Aligned_cols=35  Identities=26%  Similarity=0.543  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+||++|||+|++|-++|.+-+| .|.+...+|...
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQ-lGlkTacvEkr~   72 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQ-LGLKTACVEKRG   72 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHH-hcceeEEEeccC
Confidence            47999999999999999999998 799999999944

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=96.32  E-value=0.0045  Score=61.38  Aligned_cols=34  Identities=21%  Similarity=0.412  Sum_probs=31.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      ....++|||+|+||..+|+.|++ .|++|.|+|+.
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~-~Gh~Vtv~E~~  415 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLR-SGHNVTAIDGL  415 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHh-CCCeEEEEccc
Confidence            35689999999999999999997 79999999985

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=96.28  E-value=0.0059  Score=56.98  Aligned_cols=34  Identities=26%  Similarity=0.402  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .|+|||+|++|+++|..|.+ .|..|.++|+..+.
T Consensus         3 rVaVIGaG~sGL~a~k~l~e-~g~~~~~fE~~~~i   36 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLE-EGLEVTCFEKSDDI   36 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHH-TT-EEEEEESSSSS
T ss_pred             EEEEECccHHHHHHHHHHHH-CCCCCeEEecCCCC
Confidence            48999999999999999998 69999999998775

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=96.25  E-value=0.0063  Score=55.05  Aligned_cols=35  Identities=29%  Similarity=0.442  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHh-hCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAE-VRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~~~   78 (197)
                      .+||||+|+||..+|.+|.+ +++.+|+|+|+....
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~   38 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   38 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence            58999999999999999986 346899999998753

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=96.22  E-value=0.0067  Score=55.83  Aligned_cols=36  Identities=28%  Similarity=0.443  Sum_probs=32.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .=+++|||+|.||..+|..|++ .|.+|.|+|+-+..
T Consensus       124 ~~svLVIGGGvAGitAAl~La~-~G~~v~LVEKepsi  159 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELAD-MGFKVYLVEKEPSI  159 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHH-cCCeEEEEecCCcc
Confidence            4579999999999999999997 79999999998765

>PRK13984 putative oxidoreductase; Provisional

Probab=96.22  E-value=0.0085  Score=56.37  Aligned_cols=37  Identities=27%  Similarity=0.317  Sum_probs=33.1

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ....+++|||+|++|..+|..|++ .|.+|.|+|+...
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~-~G~~v~vie~~~~  317 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLAT-MGYEVTVYESLSK  317 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence            346789999999999999999997 7999999998764

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=96.21  E-value=0.0042  Score=57.05  Aligned_cols=33  Identities=33%  Similarity=0.498  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ||+|||||.||+++|..|++  ..+|+||=+++..
T Consensus         9 dV~IiGsG~AGL~~AL~L~~--~~~V~vltk~~~~   41 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAP--SFRVTVLTKGPLG   41 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCC--CCcEEEEeCCCCC
Confidence            99999999999999999996  3999999998765

>KOG4254|consensus

Probab=96.12  E-value=0.0054  Score=55.97  Aligned_cols=38  Identities=24%  Similarity=0.364  Sum_probs=34.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..+||+||||+|..|+.+|..|++ -+.+|.|+|+....
T Consensus        12 ~~~ydavvig~GhnGL~aaayl~r-~g~~V~vlerrhv~   49 (561)
T KOG4254|consen   12 KPEYDAVVIGGGHNGLTAAAYLAR-YGQSVAVLERRHVI   49 (561)
T ss_pred             CcccceEEecCCccchhHHHHHHh-cCcceEEEEEeeec
Confidence            569999999999999999999997 79999999998543

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.09  E-value=0.0082  Score=56.10  Aligned_cols=36  Identities=25%  Similarity=0.349  Sum_probs=31.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ..-+++|||+|++|+.+|..|++ .|.+|+|+|+.+.
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~-~G~~V~v~e~~~~  171 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRR-MGHAVTIFEAGPK  171 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence            35689999999999999999997 6999999997643

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=96.05  E-value=0.0068  Score=53.42  Aligned_cols=38  Identities=26%  Similarity=0.293  Sum_probs=27.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +.||+|+||.|++++.+|..|.+....+++.||+-+..
T Consensus         1 ~~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f   38 (341)
T PF13434_consen    1 EIYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF   38 (341)
T ss_dssp             -EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred             CceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence            46999999999999999999998656999999987754

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.03  E-value=0.0091  Score=53.16  Aligned_cols=36  Identities=25%  Similarity=0.292  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~   78 (197)
                      -++||||+|+||+.+|..|.+. ...+|+|+++....
T Consensus         4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~   40 (396)
T PRK09754          4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL   40 (396)
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence            4799999999999999999872 23589999987653

>PRK09897 hypothetical protein; Provisional

Probab=95.92  E-value=0.011  Score=55.29  Aligned_cols=35  Identities=26%  Similarity=0.321  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~   77 (197)
                      .+++|||+|++|.++|.+|.+. ...+|.|+|....
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~   37 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE   37 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence            4799999999999999999873 3468999999654

>KOG4405|consensus

Probab=95.91  E-value=0.0089  Score=54.00  Aligned_cols=42  Identities=29%  Similarity=0.508  Sum_probs=37.6

Q ss_pred             CCCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCC
Q psy6708          37 DQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPS   79 (197)
Q Consensus        37 ~~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~   79 (197)
                      +..|++||+||||.|..=+++|+.-++ .|.+||=|+......
T Consensus         3 D~lP~~fDvVViGTGlpESilAAAcSr-sG~sVLHlDsn~yYG   44 (547)
T KOG4405|consen    3 DILPEEFDVVVIGTGLPESILAAACSR-SGSSVLHLDSNEYYG   44 (547)
T ss_pred             cCCchhccEEEEcCCCcHHHHHHHhhh-cCCceEeccCccccC
Confidence            357889999999999999999999997 899999999988763

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=95.89  E-value=0.012  Score=53.00  Aligned_cols=38  Identities=18%  Similarity=0.424  Sum_probs=32.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ....++||||+|.||+.+|.+|.. .+.+|.|||.....
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~-~~~~ItlI~~~~~~   45 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDP-KKYNITVISPRNHM   45 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCc-CCCeEEEEcCCCCc
Confidence            346789999999999999999975 57899999987653

>KOG2311|consensus

Probab=95.87  E-value=0.0081  Score=55.29  Aligned_cols=37  Identities=27%  Similarity=0.419  Sum_probs=31.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ..+|||||||+|-|||-+|..-|+ -|.+.+||-..-+
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR-~Ga~TlLlT~~ld   62 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAAR-LGARTLLLTHNLD   62 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHh-cCCceEEeecccc
Confidence            568999999999999999999886 6888888765543

>KOG0042|consensus

Probab=95.82  E-value=0.0041  Score=57.80  Aligned_cols=36  Identities=42%  Similarity=0.577  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +||++|||+|+.|+=+|.--+- +|++|.|+|+|...
T Consensus        67 ~fDVLIIGGGAtGaGcALDA~T-RGLktaLVE~~DF~  102 (680)
T KOG0042|consen   67 EFDVLIIGGGATGAGCALDAAT-RGLKTALVEAGDFA  102 (680)
T ss_pred             cccEEEECCCccCcceeehhhc-ccceeEEEeccccc
Confidence            6999999999999999988664 79999999999764

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=95.78  E-value=0.015  Score=51.39  Aligned_cols=35  Identities=23%  Similarity=0.338  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHHHh-hCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAE-VRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~~   77 (197)
                      .++||||+|+||..+|.+|.+ +++.+|.||++.+.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~   38 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG   38 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence            489999999999999999986 45678999987654

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=95.70  E-value=0.014  Score=51.02  Aligned_cols=35  Identities=14%  Similarity=0.408  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHh--hCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAE--VRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae--~~g~~VLvLEaG~~~   78 (197)
                      .+||||+|.||..+|.+|.+  .++.+|+|+|+....
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~   37 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT   37 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence            38999999999999999964  257899999987653

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.62  E-value=0.015  Score=51.30  Aligned_cols=34  Identities=32%  Similarity=0.388  Sum_probs=31.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -+.|||+|.||+-+|+++++ .|++|.|.|-.+..
T Consensus         5 ~i~VIGaGLAGSEAAwqiA~-~Gv~V~L~EMRp~k   38 (439)
T COG1206           5 PINVIGAGLAGSEAAWQIAK-RGVPVILYEMRPVK   38 (439)
T ss_pred             ceEEEcccccccHHHHHHHH-cCCcEEEEEccccc
Confidence            47899999999999999998 79999999998765

>KOG3851|consensus

Probab=95.52  E-value=0.02  Score=50.46  Aligned_cols=43  Identities=23%  Similarity=0.353  Sum_probs=35.0

Q ss_pred             CCCCCCcccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708          36 PDQWPQEFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP   78 (197)
Q Consensus        36 ~~~~~~~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~   78 (197)
                      ......+|.++|||+|.+|+.+|+++.+. +.-+|-+||--.+.
T Consensus        33 ~~~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H   76 (446)
T KOG3851|consen   33 ARFARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH   76 (446)
T ss_pred             hhhcccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhc
Confidence            34556799999999999999999999973 34589999977653

>KOG1276|consensus

Probab=95.36  E-value=0.025  Score=51.41  Aligned_cols=39  Identities=28%  Similarity=0.307  Sum_probs=32.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~   78 (197)
                      ...-+++|||+|.+|+.+|+.|++. +...|.|.|++++.
T Consensus         9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv   48 (491)
T KOG1276|consen    9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV   48 (491)
T ss_pred             eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence            3467899999999999999999973 44567889999875

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=95.31  E-value=0.031  Score=49.95  Aligned_cols=38  Identities=29%  Similarity=0.402  Sum_probs=34.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ...||+||+|.|.-=|+++.+|+- .+.+||.|++....
T Consensus         4 ~~~yDvii~GTgl~esils~~Ls~-~~k~VlhiD~Nd~Y   41 (434)
T COG5044           4 ETLYDVIILGTGLRESILSAALSW-DGKNVLHIDKNDYY   41 (434)
T ss_pred             cccccEEEecccHHHHHHHHHhhh-cCceEEEEeCCCcc
Confidence            348999999999999999999997 69999999998775

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=95.28  E-value=0.023  Score=51.86  Aligned_cols=39  Identities=36%  Similarity=0.477  Sum_probs=34.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhh----CCCeEEEEecCCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEV----RSWNILLVEAGGDPS   79 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~----~g~~VLvLEaG~~~~   79 (197)
                      ..||+||||+|++|..+|++|+.+    +..+|++||.|.+..
T Consensus        17 ~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~   59 (486)
T COG2509          17 AALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIE   59 (486)
T ss_pred             hccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchh
Confidence            479999999999999999999974    368999999998753

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=95.21  E-value=0.022  Score=50.60  Aligned_cols=36  Identities=22%  Similarity=0.300  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..-++.|||+|.+|+++|..|+.  ..+|.|.|++...
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~--rhdVTLfEA~~rl   42 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSR--RHDVTLFEADRRL   42 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhc--ccceEEEeccccc
Confidence            46689999999999999999996  6899999999875

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.17  E-value=0.013  Score=52.16  Aligned_cols=35  Identities=29%  Similarity=0.459  Sum_probs=28.6

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeE-EEEec
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNI-LLVEA   74 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~V-LvLEa   74 (197)
                      .++.||++|||+|+||..+|..-|+ .|.|. ++-|+
T Consensus       208 ~k~~yDVLvVGgGPAgaaAAiYaAR-KGiRTGl~aer  243 (520)
T COG3634         208 AKDAYDVLVVGGGPAGAAAAIYAAR-KGIRTGLVAER  243 (520)
T ss_pred             ccCCceEEEEcCCcchhHHHHHHHh-hcchhhhhhhh
Confidence            4568999999999999999999887 68776 44443

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=95.14  E-value=0.028  Score=43.68  Aligned_cols=31  Identities=23%  Similarity=0.415  Sum_probs=26.6

Q ss_pred             EEECCChHHHHHHHHHHhhC----CCeEEEEecCC
Q psy6708          46 IIVGAGTAGSILASRLAEVR----SWNILLVEAGG   76 (197)
Q Consensus        46 IIVGsG~aG~~~A~~Lae~~----g~~VLvLEaG~   76 (197)
                      .|||+|++|..++.+|.+..    ..+|.|+|..+
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~   35 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP   35 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence            49999999999999999753    57899999843

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=95.01  E-value=0.037  Score=48.26  Aligned_cols=35  Identities=34%  Similarity=0.442  Sum_probs=32.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -+++|||+|..|+.+|..|.+ .|++|.++|.....
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~-~G~~v~l~e~~~~~  171 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAK-RGKKVTLIEAADRL  171 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHH-cCCeEEEEEccccc
Confidence            599999999999999999998 79999999999875

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.98  E-value=0.041  Score=42.00  Aligned_cols=31  Identities=39%  Similarity=0.678  Sum_probs=29.0

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +.|+|+|..|+..|++|++ .+.+|.++-++.
T Consensus         1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHH-TTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHH-CCCceEEEEccc
Confidence            5799999999999999998 899999998887

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=94.82  E-value=0.031  Score=51.33  Aligned_cols=35  Identities=23%  Similarity=0.304  Sum_probs=32.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.+.|||||++|+.+|..|++ .|++|++.|+-+..
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~-~G~~Vtv~e~~~~~  158 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSR-AGHDVTVFERVALD  158 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHh-CCCeEEEeCCcCCC
Confidence            789999999999999999997 79999999987664

>KOG2844|consensus

Probab=94.74  E-value=0.042  Score=52.49  Aligned_cols=38  Identities=29%  Similarity=0.495  Sum_probs=30.8

Q ss_pred             CCCCCcccEEEECCChHHHHHHHHHHhhCCCeE-EEEecC
Q psy6708          37 DQWPQEFDFIIVGAGTAGSILASRLAEVRSWNI-LLVEAG   75 (197)
Q Consensus        37 ~~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~V-LvLEaG   75 (197)
                      ..++...|++|||+|.+|+.+|+.||+ .++++ +++|+-
T Consensus        34 ~~~~~~A~vvViggG~~g~~~~yhlak-~g~k~avlle~~   72 (856)
T KOG2844|consen   34 TPLPSTADVVVIGGGSLGCSTAYHLAK-RGMKGAVLLERS   72 (856)
T ss_pred             ccCCCcccEEEEcCCchhHHHHHHHHH-ccccceEEEeee
Confidence            345667999999999999999999998 78884 555543

>KOG2755|consensus

Probab=94.53  E-value=0.03  Score=48.05  Aligned_cols=34  Identities=44%  Similarity=0.573  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHh-hCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAE-VRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~~   77 (197)
                      .|||||+|.||..+|..|++ .+...||+|-+.+.
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~   35 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF   35 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence            38999999999999999997 46789999988765

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=94.39  E-value=0.06  Score=44.68  Aligned_cols=34  Identities=32%  Similarity=0.636  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .+||||+|..|..+|..|++ .|..|+++|.-...
T Consensus         2 ~iiIiG~G~vG~~va~~L~~-~g~~Vv~Id~d~~~   35 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSE-EGHNVVLIDRDEER   35 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHh-CCCceEEEEcCHHH
Confidence            48999999999999999998 69999999997653

>KOG1439|consensus

Probab=94.05  E-value=0.028  Score=50.57  Aligned_cols=37  Identities=24%  Similarity=0.460  Sum_probs=34.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ++||+||+|.|.-=|+++..|+. .|++||.+++.+..
T Consensus         3 eeyDvivlGTgl~ecilS~~Ls~-~gkkVLhiDrN~yY   39 (440)
T KOG1439|consen    3 EEYDVIVLGTGLTECILSGALSV-DGKKVLHIDRNDYY   39 (440)
T ss_pred             CceeEEEEcCCchhheeeeeeee-cCcEEEEEeCCCCC
Confidence            46999999999999999999997 69999999998876

>KOG1800|consensus

Probab=94.03  E-value=0.075  Score=47.77  Aligned_cols=35  Identities=29%  Similarity=0.301  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHHh-hCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAE-VRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~~~   78 (197)
                      -++|||||+||..+|..|-+ .++.+|-|.|+-+..
T Consensus        22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP   57 (468)
T KOG1800|consen   22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP   57 (468)
T ss_pred             eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence            79999999999999999987 467999999998763

>KOG2404|consensus

Probab=93.69  E-value=0.08  Score=46.87  Aligned_cols=34  Identities=21%  Similarity=0.450  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .+||||+|.||+.++.++-. .+..|++||.-...
T Consensus        11 pvvVIGgGLAGLsasn~iin-~gg~V~llek~~s~   44 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIIN-KGGIVILLEKAGSI   44 (477)
T ss_pred             cEEEECCchhhhhhHHHHHh-cCCeEEEEeccCCc
Confidence            69999999999999999996 67789999987664

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=93.63  E-value=0.12  Score=46.08  Aligned_cols=34  Identities=32%  Similarity=0.503  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus       146 ~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~~  179 (396)
T PRK09754        146 SVVIVGAGTIGLELAASATQ-RRCKVTVIELAATV  179 (396)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCcc
Confidence            69999999999999999997 69999999998753

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=93.59  E-value=0.12  Score=45.61  Aligned_cols=34  Identities=26%  Similarity=0.415  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.++|+++.
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~-~g~~Vtlv~~~~~  175 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCR-AGKAVTLVDNAAS  175 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHh-cCCeEEEEecCCc
Confidence            368999999999999999997 6999999999875

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=93.52  E-value=0.099  Score=47.31  Aligned_cols=36  Identities=31%  Similarity=0.336  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhhC-CCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVR-SWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~-g~~VLvLEaG~~~   78 (197)
                      --+||||+|.+|..+|.+|.+.. +.+|.|||+-...
T Consensus         4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h   40 (405)
T COG1252           4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH   40 (405)
T ss_pred             ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc
Confidence            45899999999999999999742 5889999998764

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=93.44  E-value=0.12  Score=47.09  Aligned_cols=34  Identities=35%  Similarity=0.444  Sum_probs=31.1

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|||+++..
T Consensus       182 ~vvIIGgG~~G~E~A~~l~~-~g~~Vtli~~~~~i  215 (472)
T PRK05976        182 SLVIVGGGVIGLEWASMLAD-FGVEVTVVEAADRI  215 (472)
T ss_pred             EEEEECCCHHHHHHHHHHHH-cCCeEEEEEecCcc
Confidence            79999999999999999997 79999999998753

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=93.28  E-value=0.073  Score=48.14  Aligned_cols=38  Identities=39%  Similarity=0.545  Sum_probs=31.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhC------------CCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVR------------SWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~------------g~~VLvLEaG~~~   78 (197)
                      ..-+++|||+|+.|.-+|.+|++..            ..+|.|+|+|+..
T Consensus       154 ~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I  203 (405)
T COG1252         154 ALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI  203 (405)
T ss_pred             ceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence            4568999999999999999998721            1399999999975

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=93.20  E-value=0.15  Score=45.99  Aligned_cols=34  Identities=18%  Similarity=0.271  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|+|++...
T Consensus       159 ~vvIIGgG~~g~e~A~~l~~-~g~~Vtli~~~~~~  192 (438)
T PRK07251        159 RLGIIGGGNIGLEFAGLYNK-LGSKVTVLDAASTI  192 (438)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCcc
Confidence            69999999999999999997 79999999998653

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=93.14  E-value=0.14  Score=39.80  Aligned_cols=31  Identities=29%  Similarity=0.458  Sum_probs=27.8

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +.|+|+|..|.++|..|++ .+.+|.|..+-.
T Consensus         2 I~ViGaG~~G~AlA~~la~-~g~~V~l~~~~~   32 (157)
T PF01210_consen    2 IAVIGAGNWGTALAALLAD-NGHEVTLWGRDE   32 (157)
T ss_dssp             EEEESSSHHHHHHHHHHHH-CTEEEEEETSCH
T ss_pred             EEEECcCHHHHHHHHHHHH-cCCEEEEEeccH
Confidence            6899999999999999998 689999987754

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=92.97  E-value=0.15  Score=44.02  Aligned_cols=32  Identities=34%  Similarity=0.521  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+.|||+|.-|+..|.+|++ .|.+|.++.++.
T Consensus         4 ~I~IiGaGaiG~~~a~~L~~-~G~~V~lv~r~~   35 (305)
T PRK05708          4 TWHILGAGSLGSLWACRLAR-AGLPVRLILRDR   35 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHh-CCCCeEEEEech
Confidence            58999999999999999997 789999999975

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=92.79  E-value=0.17  Score=45.71  Aligned_cols=35  Identities=23%  Similarity=0.294  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -+++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtli~~~~~~  205 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFAS-LGSKVTVIEMLDRI  205 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCcEEEEEcCCCC
Confidence            379999999999999999997 69999999998753

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=92.74  E-value=0.19  Score=45.65  Aligned_cols=34  Identities=26%  Similarity=0.386  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus       172 ~vvIIGgG~iG~E~A~~l~~-~g~~Vtli~~~~~l  205 (458)
T PRK06912        172 SLLIVGGGVIGCEFASIYSR-LGTKVTIVEMAPQL  205 (458)
T ss_pred             cEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCCc
Confidence            69999999999999999997 69999999998653

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=92.69  E-value=0.2  Score=43.32  Aligned_cols=32  Identities=19%  Similarity=0.411  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+.|||+|.-|+.+|.+|++ .|..|.++.++.
T Consensus         7 ~I~IiG~GaiG~~lA~~L~~-~g~~V~~~~r~~   38 (313)
T PRK06249          7 RIGIIGTGAIGGFYGAMLAR-AGFDVHFLLRSD   38 (313)
T ss_pred             EEEEECCCHHHHHHHHHHHH-CCCeEEEEEeCC
Confidence            59999999999999999998 799999998875

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=92.66  E-value=0.21  Score=39.95  Aligned_cols=32  Identities=25%  Similarity=0.488  Sum_probs=26.9

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +.|||+|..|..+|..++. .|.+|.++|..+.
T Consensus         2 V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~   33 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFAR-AGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHH-TTSEEEEE-SSHH
T ss_pred             EEEEcCCHHHHHHHHHHHh-CCCcEEEEECChH
Confidence            6799999999999999997 7999999998643

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK07846 mycothione reductase; Reviewed

Probab=92.53  E-value=0.21  Score=45.49  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~-~G~~Vtli~~~~~l  201 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSA-LGVRVTVVNRSGRL  201 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCCcc
Confidence            379999999999999999997 79999999998753

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=92.45  E-value=0.2  Score=45.78  Aligned_cols=34  Identities=15%  Similarity=0.224  Sum_probs=31.1

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|||+++..
T Consensus       176 ~vvIiGgG~iG~E~A~~l~~-~G~~Vtlv~~~~~i  209 (471)
T PRK06467        176 RLLVMGGGIIGLEMGTVYHR-LGSEVDVVEMFDQV  209 (471)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCCEEEEecCCCC
Confidence            68999999999999999997 79999999998753

>TIGR02053 MerA mercuric reductase

Probab=92.39  E-value=0.21  Score=45.31  Aligned_cols=34  Identities=18%  Similarity=0.342  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.|+|+++.
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~-~g~~Vtli~~~~~  200 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFAR-LGSEVTILQRSDR  200 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCcEEEEEcCCc
Confidence            378999999999999999997 6999999999865

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=92.34  E-value=0.18  Score=49.25  Aligned_cols=34  Identities=21%  Similarity=0.452  Sum_probs=28.9

Q ss_pred             EEEECCChHHHHHHHHHHhh--CCCeEEEEecCCCC
Q psy6708          45 FIIVGAGTAGSILASRLAEV--RSWNILLVEAGGDP   78 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~--~g~~VLvLEaG~~~   78 (197)
                      +||||+|+||..+|.+|.+.  .+.+|.|+|+.+..
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~   36 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP   36 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence            58999999999999998762  35799999998764

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=92.33  E-value=0.22  Score=49.15  Aligned_cols=35  Identities=17%  Similarity=0.303  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHhh---CCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEV---RSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~---~g~~VLvLEaG~~~   78 (197)
                      .+||||+|+||..+|.+|.+.   .+.+|.|+++.+..
T Consensus         5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~   42 (847)
T PRK14989          5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI   42 (847)
T ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence            699999999999999999752   35799999998764

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=92.27  E-value=0.21  Score=42.47  Aligned_cols=29  Identities=28%  Similarity=0.540  Sum_probs=27.2

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEA   74 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa   74 (197)
                      +.|||+|..|+.+|..|++ .|.+|.++.+
T Consensus         3 I~IiG~G~iG~~~a~~L~~-~g~~V~~~~r   31 (305)
T PRK12921          3 IAVVGAGAVGGTFGGRLLE-AGRDVTFLVR   31 (305)
T ss_pred             EEEECCCHHHHHHHHHHHH-CCCceEEEec
Confidence            7899999999999999998 6899999988

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=92.19  E-value=0.23  Score=44.48  Aligned_cols=33  Identities=30%  Similarity=0.514  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|..|+-+|..|++ .+.+|.+++++..
T Consensus       139 ~vvViGgG~~g~e~A~~l~~-~g~~Vtli~~~~~  171 (427)
T TIGR03385       139 NVVIIGGGYIGIEMAEALRE-RGKNVTLIHRSER  171 (427)
T ss_pred             eEEEECCCHHHHHHHHHHHh-CCCcEEEEECCcc
Confidence            68999999999999999997 7899999998865

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=92.15  E-value=0.24  Score=41.99  Aligned_cols=30  Identities=30%  Similarity=0.568  Sum_probs=27.6

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      +.|||+|..|+.+|..|++ .|.+|.++.+.
T Consensus         3 I~IiG~G~~G~~~a~~L~~-~g~~V~~~~r~   32 (304)
T PRK06522          3 IAILGAGAIGGLFGAALAQ-AGHDVTLVARR   32 (304)
T ss_pred             EEEECCCHHHHHHHHHHHh-CCCeEEEEECC
Confidence            7899999999999999997 78999999873

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=92.15  E-value=0.23  Score=45.11  Aligned_cols=33  Identities=30%  Similarity=0.225  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|||+++.
T Consensus       168 ~vvIIGgG~iG~E~A~~l~~-~g~~Vtli~~~~~  200 (450)
T TIGR01421       168 RVVIVGAGYIAVELAGVLHG-LGSETHLVIRHER  200 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCC
Confidence            69999999999999999997 7999999999865

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.11  E-value=0.33  Score=35.14  Aligned_cols=32  Identities=22%  Similarity=0.532  Sum_probs=28.1

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      |||+|.|..|..++..|.+ .+.+|+++|..+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcH
Confidence            6999999999999999998 5779999999864

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.10  E-value=0.22  Score=45.85  Aligned_cols=36  Identities=28%  Similarity=0.365  Sum_probs=29.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhhC--CCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVR--SWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~--g~~VLvLEaG~~~   78 (197)
                      ++++|||+|++|.++|..|.+.+  ..+|-|+|.-...
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~   39 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF   39 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence            78999999999999999998732  2348999987664

>PRK06370 mercuric reductase; Validated

Probab=91.88  E-value=0.27  Score=44.66  Aligned_cols=34  Identities=21%  Similarity=0.364  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       173 ~vvVIGgG~~g~E~A~~l~~-~G~~Vtli~~~~~~  206 (463)
T PRK06370        173 HLVIIGGGYIGLEFAQMFRR-FGSEVTVIERGPRL  206 (463)
T ss_pred             EEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCCCC
Confidence            68999999999999999997 79999999998753

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=91.86  E-value=0.28  Score=44.72  Aligned_cols=34  Identities=24%  Similarity=0.282  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus       176 ~vvIIGgG~ig~E~A~~l~~-~G~~Vtlie~~~~i  209 (466)
T PRK06115        176 HLVVIGAGVIGLELGSVWRR-LGAQVTVVEYLDRI  209 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEeCCCCC
Confidence            58999999999999999997 79999999998753

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=91.86  E-value=0.26  Score=38.99  Aligned_cols=33  Identities=24%  Similarity=0.324  Sum_probs=26.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      -.++|||+|.++.-+|..|++ .+.+|.++=+.+
T Consensus       168 k~V~VVG~G~SA~d~a~~l~~-~g~~V~~~~R~~  200 (203)
T PF13738_consen  168 KRVVVVGGGNSAVDIAYALAK-AGKSVTLVTRSP  200 (203)
T ss_dssp             SEEEEE--SHHHHHHHHHHTT-TCSEEEEEESS-
T ss_pred             CcEEEEcChHHHHHHHHHHHh-hCCEEEEEecCC
Confidence            579999999999999999998 589998887654

...

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=91.83  E-value=0.28  Score=44.46  Aligned_cols=34  Identities=26%  Similarity=0.344  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       174 ~vvVvGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~  207 (462)
T PRK06416        174 SLVVIGGGYIGVEFASAYAS-LGAEVTIVEALPRI  207 (462)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCCCc
Confidence            68999999999999999997 69999999998753

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=91.80  E-value=0.28  Score=44.33  Aligned_cols=34  Identities=29%  Similarity=0.375  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus       177 ~v~IiGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~  210 (461)
T PRK05249        177 SLIIYGAGVIGCEYASIFAA-LGVKVTLINTRDRL  210 (461)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCCc
Confidence            68999999999999999997 79999999998753

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=91.78  E-value=0.28  Score=44.66  Aligned_cols=34  Identities=26%  Similarity=0.343  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus       174 ~vvVIGgG~ig~E~A~~l~~-~G~~Vtlv~~~~~~  207 (466)
T PRK07818        174 SIVIAGAGAIGMEFAYVLKN-YGVDVTIVEFLDRA  207 (466)
T ss_pred             eEEEECCcHHHHHHHHHHHH-cCCeEEEEecCCCc
Confidence            68999999999999999997 69999999987653

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=91.73  E-value=0.26  Score=44.54  Aligned_cols=33  Identities=24%  Similarity=0.326  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|+|+++.
T Consensus       150 ~vvViGgG~ig~E~A~~l~~-~g~~Vtli~~~~~  182 (438)
T PRK13512        150 KALVVGAGYISLEVLENLYE-RGLHPTLIHRSDK  182 (438)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCcEEEEecccc
Confidence            68999999999999999997 7999999999865

>KOG0399|consensus

Probab=91.57  E-value=0.23  Score=50.30  Aligned_cols=36  Identities=22%  Similarity=0.316  Sum_probs=32.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -..+.|||||++|+.+|..|-+ .|+.|.|-|+..+.
T Consensus      1785 g~~vaiigsgpaglaaadqlnk-~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNK-AGHTVTVYERSDRV 1820 (2142)
T ss_pred             CcEEEEEccCchhhhHHHHHhh-cCcEEEEEEecCCc
Confidence            4689999999999999999997 89999999998764

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=91.37  E-value=0.33  Score=43.89  Aligned_cols=34  Identities=21%  Similarity=0.385  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       171 ~v~VIGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~  204 (460)
T PRK06292        171 SLAVIGGGVIGLELGQALSR-LGVKVTVFERGDRI  204 (460)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCc
Confidence            69999999999999999997 69999999998753

>KOG0404|consensus

Probab=91.20  E-value=0.24  Score=41.87  Aligned_cols=33  Identities=27%  Similarity=0.307  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||||+|+-.+|..+++ +.++-||.|..-.
T Consensus        10 ~v~IiGSGPAa~tAAiYaar-aelkPllfEG~~~   42 (322)
T KOG0404|consen   10 NVVIIGSGPAAHTAAIYAAR-AELKPLLFEGMMA   42 (322)
T ss_pred             eEEEEccCchHHHHHHHHhh-cccCceEEeeeec
Confidence            68999999999999999997 7899999997644

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=91.01  E-value=0.28  Score=42.22  Aligned_cols=26  Identities=27%  Similarity=0.341  Sum_probs=23.7

Q ss_pred             hHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          52 TAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        52 ~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .||+++|.+|++ .|.+|+|+|+..+.
T Consensus         1 iaGL~aA~~L~~-~G~~v~vlEa~~r~   26 (450)
T PF01593_consen    1 IAGLAAAYYLAK-AGYDVTVLEASDRV   26 (450)
T ss_dssp             HHHHHHHHHHHH-TTTEEEEEESSSSS
T ss_pred             ChHHHHHHHHHh-CCCCEEEEEcCCCC
Confidence            489999999997 79999999999875

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=90.86  E-value=0.38  Score=43.19  Aligned_cols=34  Identities=18%  Similarity=0.263  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -.++|||+|..|+-+|..|.+ .+.+|.++++++.
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~-~g~~Vtli~~~~~  183 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKH-LGKNVRIIQLEDR  183 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-cCCcEEEEeCCcc
Confidence            368999999999999999987 6899999998864

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=90.84  E-value=0.36  Score=41.66  Aligned_cols=32  Identities=28%  Similarity=0.361  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+.|||+|.-|+.+|..|++ .|.+|.++++.+
T Consensus         4 ~V~VIG~G~mG~~iA~~la~-~G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFAR-AGHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHH-CCCeeEEEeCCH
Confidence            48899999999999999997 799999998865

>TIGR03452 mycothione_red mycothione reductase

Probab=90.80  E-value=0.4  Score=43.61  Aligned_cols=33  Identities=18%  Similarity=0.318  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|+|.++.
T Consensus       171 ~vvVIGgG~ig~E~A~~l~~-~G~~Vtli~~~~~  203 (452)
T TIGR03452       171 SLVIVGGGYIAAEFAHVFSA-LGTRVTIVNRSTK  203 (452)
T ss_pred             cEEEECCCHHHHHHHHHHHh-CCCcEEEEEccCc
Confidence            69999999999999999997 7999999999875

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=90.68  E-value=0.42  Score=43.27  Aligned_cols=34  Identities=18%  Similarity=0.191  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       168 ~vvVIGgG~~g~E~A~~l~~-~G~~Vtli~~~~~~  201 (446)
T TIGR01424       168 SILILGGGYIAVEFAGIWRG-LGVQVTLIYRGELI  201 (446)
T ss_pred             eEEEECCcHHHHHHHHHHHH-cCCeEEEEEeCCCC
Confidence            58999999999999999997 79999999998753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=90.67  E-value=0.36  Score=38.82  Aligned_cols=32  Identities=28%  Similarity=0.493  Sum_probs=25.9

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +.|||.|..|+.+|..||+ .|++|+.+|..+.
T Consensus         3 I~ViGlGyvGl~~A~~lA~-~G~~V~g~D~~~~   34 (185)
T PF03721_consen    3 IAVIGLGYVGLPLAAALAE-KGHQVIGVDIDEE   34 (185)
T ss_dssp             EEEE--STTHHHHHHHHHH-TTSEEEEE-S-HH
T ss_pred             EEEECCCcchHHHHHHHHh-CCCEEEEEeCChH
Confidence            6899999999999999998 7999999998765

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.65  E-value=0.43  Score=40.70  Aligned_cols=32  Identities=22%  Similarity=0.418  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      -+.|||+|..|..+|..|++ .|.+|.+++...
T Consensus         5 kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~   36 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISD   36 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCH
Confidence            48899999999999999997 799999998754

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=90.37  E-value=0.45  Score=39.71  Aligned_cols=34  Identities=21%  Similarity=0.211  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -.++|||+|..|.-+|..|++ .+.+|.++++++.
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~-~~~~V~~v~~~~~  175 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTR-IAKKVTLVHRRDK  175 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHh-hcCEEEEEEeCcc
Confidence            379999999999999999997 6899999999864

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=90.37  E-value=0.47  Score=43.34  Aligned_cols=34  Identities=24%  Similarity=0.258  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus       185 ~vvVvGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~  218 (475)
T PRK06327        185 KLAVIGAGVIGLELGSVWRR-LGAEVTILEALPAF  218 (475)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEeCCCcc
Confidence            78999999999999999997 69999999998753

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=90.29  E-value=0.37  Score=43.68  Aligned_cols=38  Identities=29%  Similarity=0.319  Sum_probs=34.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +.+|+|.||-|++-+.+|..|.+..+.++|.||+-+..
T Consensus         4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F   41 (436)
T COG3486           4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF   41 (436)
T ss_pred             cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence            57999999999999999999998667999999999875

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=90.15  E-value=0.49  Score=43.45  Aligned_cols=34  Identities=32%  Similarity=0.435  Sum_probs=31.8

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..+|||+|..|+-+|.-++. -|.+|.|||+++..
T Consensus       175 ~lvIiGgG~IGlE~a~~~~~-LG~~VTiie~~~~i  208 (454)
T COG1249         175 SLVIVGGGYIGLEFASVFAA-LGSKVTVVERGDRI  208 (454)
T ss_pred             EEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCC
Confidence            48999999999999999997 79999999999875

>PRK06116 glutathione reductase; Validated

Probab=90.13  E-value=0.5  Score=42.67  Aligned_cols=33  Identities=24%  Similarity=0.226  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++++++.
T Consensus       169 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~  201 (450)
T PRK06116        169 RVAVVGAGYIAVEFAGVLNG-LGSETHLFVRGDA  201 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence            68999999999999999997 6999999999875

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.12  E-value=0.5  Score=43.11  Aligned_cols=32  Identities=25%  Similarity=0.425  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .++|||+|.+|..+|..|.+ .|.+|.++|...
T Consensus        18 ~v~viG~G~~G~~~A~~L~~-~G~~V~~~d~~~   49 (480)
T PRK01438         18 RVVVAGLGVSGFAAADALLE-LGARVTVVDDGD   49 (480)
T ss_pred             EEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence            69999999999999999987 799999999764

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=89.99  E-value=0.54  Score=42.88  Aligned_cols=34  Identities=29%  Similarity=0.461  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       179 ~vvVIGgG~ig~E~A~~l~~-~g~~Vtli~~~~~~  212 (466)
T PRK07845        179 HLIVVGSGVTGAEFASAYTE-LGVKVTLVSSRDRV  212 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCCcC
Confidence            68999999999999999997 79999999998753

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=89.79  E-value=0.5  Score=43.76  Aligned_cols=33  Identities=24%  Similarity=0.390  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|+|.++.
T Consensus       354 ~VvViGgG~~g~E~A~~L~~-~g~~Vtli~~~~~  386 (515)
T TIGR03140       354 DVAVIGGGNSGIEAAIDLAG-IVRHVTVLEFADE  386 (515)
T ss_pred             EEEEECCcHHHHHHHHHHHh-cCcEEEEEEeCCc
Confidence            79999999999999999997 6899999998754

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.73  E-value=0.53  Score=40.11  Aligned_cols=32  Identities=28%  Similarity=0.467  Sum_probs=28.6

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +.|||+|.-|..+|..|++ .|.+|.+++..+.
T Consensus         4 V~VIG~G~mG~~iA~~la~-~G~~V~~~d~~~~   35 (288)
T PRK09260          4 LVVVGAGVMGRGIAYVFAV-SGFQTTLVDIKQE   35 (288)
T ss_pred             EEEECccHHHHHHHHHHHh-CCCcEEEEeCCHH
Confidence            7899999999999999997 6999999987643

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=89.67  E-value=0.5  Score=44.22  Aligned_cols=34  Identities=21%  Similarity=0.297  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.++++++.
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~-~g~~Vtli~~~~~  177 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTR-YASKVTVIVREPD  177 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHc-cCCEEEEEEeCCc
Confidence            368999999999999999997 6999999999875

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=89.66  E-value=0.52  Score=40.85  Aligned_cols=32  Identities=28%  Similarity=0.503  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+.|||+|.-|+..|.+|++ .|.+|.++++..
T Consensus         4 kI~IiG~G~mG~~~A~~L~~-~G~~V~~~~r~~   35 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAA-AGADVTLIGRAR   35 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHh-cCCcEEEEecHH
Confidence            48899999999999999998 699999999864

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=89.64  E-value=0.58  Score=42.12  Aligned_cols=35  Identities=31%  Similarity=0.658  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHhh-------------CCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEV-------------RSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~-------------~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|.-+|..|++.             ++++|.|+|+++..
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l  222 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV  222 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence            789999999999999999851             36899999998653

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=89.61  E-value=0.61  Score=42.04  Aligned_cols=34  Identities=26%  Similarity=0.276  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus       160 ~v~ViGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~  193 (441)
T PRK08010        160 HLGILGGGYIGVEFASMFAN-FGSKVTILEAASLF  193 (441)
T ss_pred             eEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence            68999999999999999997 79999999998653

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=89.49  E-value=0.57  Score=45.01  Aligned_cols=34  Identities=18%  Similarity=0.121  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|||+++..
T Consensus       314 ~VvIVGgG~iGvE~A~~l~~-~G~eVTLIe~~~~l  347 (659)
T PTZ00153        314 YMGIVGMGIIGLEFMDIYTA-LGSEVVSFEYSPQL  347 (659)
T ss_pred             ceEEECCCHHHHHHHHHHHh-CCCeEEEEeccCcc
Confidence            68999999999999999997 69999999998753

>PRK10262 thioredoxin reductase; Provisional

Probab=89.48  E-value=0.58  Score=40.16  Aligned_cols=33  Identities=15%  Similarity=0.233  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++++++.
T Consensus       148 ~vvVvGgG~~g~e~A~~l~~-~~~~Vtlv~~~~~  180 (321)
T PRK10262        148 KVAVIGGGNTAVEEALYLSN-IASEVHLIHRRDG  180 (321)
T ss_pred             EEEEECCCHHHHHHHHHHHh-hCCEEEEEEECCc
Confidence            68999999999999999997 5899999999864

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=89.40  E-value=0.6  Score=40.42  Aligned_cols=31  Identities=26%  Similarity=0.390  Sum_probs=27.9

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +.|||+|.-|+.+|..|++ .+.+|.++.+..
T Consensus         3 I~IiGaGa~G~ala~~L~~-~g~~V~l~~r~~   33 (326)
T PRK14620          3 ISILGAGSFGTAIAIALSS-KKISVNLWGRNH   33 (326)
T ss_pred             EEEECcCHHHHHHHHHHHH-CCCeEEEEecCH
Confidence            7899999999999999997 689999998743

>PLN02507 glutathione reductase

Probab=89.32  E-value=0.61  Score=43.07  Aligned_cols=33  Identities=15%  Similarity=0.040  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|+|+++.
T Consensus       205 ~vvVIGgG~ig~E~A~~l~~-~G~~Vtli~~~~~  237 (499)
T PLN02507        205 RAVVLGGGYIAVEFASIWRG-MGATVDLFFRKEL  237 (499)
T ss_pred             eEEEECCcHHHHHHHHHHHH-cCCeEEEEEecCC
Confidence            68999999999999999997 6999999999864

>PRK13748 putative mercuric reductase; Provisional

Probab=89.27  E-value=0.6  Score=43.38  Aligned_cols=32  Identities=13%  Similarity=0.237  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .++|||+|..|+-+|..|++ .+.+|.||++..
T Consensus       272 ~vvViGgG~ig~E~A~~l~~-~g~~Vtli~~~~  303 (561)
T PRK13748        272 RLAVIGSSVVALELAQAFAR-LGSKVTILARST  303 (561)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCEEEEEecCc
Confidence            69999999999999999997 699999999864

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=89.25  E-value=0.58  Score=43.30  Aligned_cols=34  Identities=21%  Similarity=0.280  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +++|||+|..|.-+|..|++ .+++|.|++.++..
T Consensus       353 ~VvVVGgG~~g~e~A~~L~~-~~~~Vtlv~~~~~l  386 (517)
T PRK15317        353 RVAVIGGGNSGVEAAIDLAG-IVKHVTVLEFAPEL  386 (517)
T ss_pred             EEEEECCCHHHHHHHHHHHh-cCCEEEEEEECccc
Confidence            79999999999999999997 68999999988653

>PRK14694 putative mercuric reductase; Provisional

Probab=89.24  E-value=0.65  Score=42.33  Aligned_cols=32  Identities=16%  Similarity=0.273  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|++.+.
T Consensus       180 ~vvViG~G~~G~E~A~~l~~-~g~~Vtlv~~~~  211 (468)
T PRK14694        180 RLLVIGASVVALELAQAFAR-LGSRVTVLARSR  211 (468)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEECCC
Confidence            68999999999999999997 799999999753

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=89.18  E-value=0.57  Score=45.80  Aligned_cols=34  Identities=15%  Similarity=0.219  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .|++|.|+|.++..
T Consensus       142 ~vvVVGgG~~GlE~A~~L~~-~G~~Vtvv~~~~~l  175 (785)
T TIGR02374       142 KAAVIGGGLLGLEAAVGLQN-LGMDVSVIHHAPGL  175 (785)
T ss_pred             eEEEECCCHHHHHHHHHHHh-cCCeEEEEccCCch
Confidence            58999999999999999997 79999999988753

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=89.16  E-value=0.53  Score=40.95  Aligned_cols=32  Identities=34%  Similarity=0.624  Sum_probs=28.5

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +.|+|+|.-|+..|.+|++ .+..|+++-+.+.
T Consensus         3 I~IlGaGAvG~l~g~~L~~-~g~~V~~~~R~~~   34 (307)
T COG1893           3 ILILGAGAIGSLLGARLAK-AGHDVTLLVRSRR   34 (307)
T ss_pred             EEEECCcHHHHHHHHHHHh-CCCeEEEEecHHH
Confidence            6899999999999999998 6788988888774

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=88.81  E-value=0.78  Score=35.91  Aligned_cols=30  Identities=23%  Similarity=0.244  Sum_probs=26.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEe
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVE   73 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLE   73 (197)
                      -.++|||+|..|.-.|..|.+ .+.+|.||.
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~-~ga~V~VIs   43 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKD-TGAFVTVVS   43 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCCEEEEEc
Confidence            458999999999999999997 799999993

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.59  E-value=0.7  Score=41.80  Aligned_cols=32  Identities=19%  Similarity=0.488  Sum_probs=28.6

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +.|||.|.+|..+|.-|.+ .|.+|.+.|+...
T Consensus         3 v~viG~G~sG~s~a~~l~~-~G~~V~~~D~~~~   34 (459)
T PRK02705          3 AHVIGLGRSGIAAARLLKA-QGWEVVVSDRNDS   34 (459)
T ss_pred             EEEEccCHHHHHHHHHHHH-CCCEEEEECCCCc
Confidence            7899999999999888887 7999999998654

>PLN02546 glutathione reductase

Probab=88.53  E-value=0.73  Score=43.38  Aligned_cols=33  Identities=15%  Similarity=0.134  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|+|+++.
T Consensus       254 ~V~VIGgG~iGvE~A~~L~~-~g~~Vtlv~~~~~  286 (558)
T PLN02546        254 KIAIVGGGYIALEFAGIFNG-LKSDVHVFIRQKK  286 (558)
T ss_pred             eEEEECCCHHHHHHHHHHHh-cCCeEEEEEeccc
Confidence            79999999999999999997 6899999999865

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.41  E-value=0.79  Score=39.05  Aligned_cols=32  Identities=25%  Similarity=0.418  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+.|||+|.-|..+|..|++ .|.+|.+.+.-+
T Consensus         6 kI~vIGaG~mG~~iA~~la~-~G~~V~l~d~~~   37 (292)
T PRK07530          6 KVGVIGAGQMGNGIAHVCAL-AGYDVLLNDVSA   37 (292)
T ss_pred             EEEEECCcHHHHHHHHHHHH-CCCeEEEEeCCH
Confidence            37899999999999999997 799999998753

>PRK14727 putative mercuric reductase; Provisional

Probab=88.40  E-value=0.76  Score=42.08  Aligned_cols=32  Identities=9%  Similarity=0.242  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|+++..
T Consensus       190 ~vvVIGgG~iG~E~A~~l~~-~G~~Vtlv~~~~  221 (479)
T PRK14727        190 SLTVIGSSVVAAEIAQAYAR-LGSRVTILARST  221 (479)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCEEEEEEcCC
Confidence            69999999999999999997 799999999853

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=88.36  E-value=0.79  Score=39.08  Aligned_cols=32  Identities=22%  Similarity=0.429  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+.|||+|.-|+.+|..|+. .|.+|.++|.-+
T Consensus         5 ~I~ViGaG~mG~~iA~~la~-~G~~V~l~d~~~   36 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFAR-TGYDVTIVDVSE   36 (291)
T ss_pred             EEEEECccHHHHHHHHHHHh-cCCeEEEEeCCH
Confidence            37899999999999999997 799999998754

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.29  E-value=0.8  Score=40.18  Aligned_cols=32  Identities=19%  Similarity=0.362  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      -+.|||+|.-|+-.|..++. .|.+|.+.|.-+
T Consensus         9 ~VaVIGaG~MG~giA~~~a~-aG~~V~l~D~~~   40 (321)
T PRK07066          9 TFAAIGSGVIGSGWVARALA-HGLDVVAWDPAP   40 (321)
T ss_pred             EEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence            38899999999999999997 899999998754

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=88.24  E-value=0.61  Score=43.23  Aligned_cols=35  Identities=29%  Similarity=0.145  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhh---CCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEV---RSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~---~g~~VLvLEaG~~   77 (197)
                      -++-|||||.|++++|..|-++   ++.+|-+||.-..
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~   40 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDV   40 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCC
Confidence            4678999999999999999875   5679999998654

>PRK04148 hypothetical protein; Provisional

Probab=88.20  E-value=0.56  Score=36.07  Aligned_cols=32  Identities=16%  Similarity=0.396  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .+++||.| .|..+|..|++ .|..|+.+|..+.
T Consensus        19 kileIG~G-fG~~vA~~L~~-~G~~ViaIDi~~~   50 (134)
T PRK04148         19 KIVELGIG-FYFKVAKKLKE-SGFDVIVIDINEK   50 (134)
T ss_pred             EEEEEEec-CCHHHHHHHHH-CCCEEEEEECCHH
Confidence            58999999 88888999997 6999999998765

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.00  E-value=0.85  Score=39.09  Aligned_cols=33  Identities=27%  Similarity=0.385  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -+.|||+|.-|.-.|..|+. .|.+|.++|..+.
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~   39 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCAR-AGVDVLVFETTEE   39 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHh-CCCEEEEEECCHH
Confidence            47899999999999999997 7999999988765

>PTZ00058 glutathione reductase; Provisional

Probab=87.93  E-value=0.77  Score=43.24  Aligned_cols=33  Identities=15%  Similarity=0.158  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++.
T Consensus       239 ~VvIIGgG~iGlE~A~~l~~-~G~~Vtli~~~~~  271 (561)
T PTZ00058        239 RIGIAGSGYIAVELINVVNR-LGAESYIFARGNR  271 (561)
T ss_pred             EEEEECCcHHHHHHHHHHHH-cCCcEEEEEeccc
Confidence            58999999999999999997 7999999999875

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=87.83  E-value=0.88  Score=39.45  Aligned_cols=32  Identities=25%  Similarity=0.284  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+.|||+|.-|..+|.+|++ .|.+|.++++.+
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~-~G~~V~~~~r~~   37 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAAS-KGVPVRLWARRP   37 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCH
Confidence            48999999999999999997 799999998854

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=87.79  E-value=0.94  Score=36.92  Aligned_cols=32  Identities=22%  Similarity=0.295  Sum_probs=28.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      -.++|||+|..|...|..|.+ .|.+|.|++..
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~-~ga~V~VIs~~   42 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLK-YGAHIVVISPE   42 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHH-CCCeEEEEcCC
Confidence            468999999999999999997 68999999743

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=87.66  E-value=0.83  Score=45.13  Aligned_cols=33  Identities=21%  Similarity=0.152  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|+|.++.
T Consensus       147 ~vvVIGgG~iGlE~A~~L~~-~G~~VtvVe~~~~  179 (847)
T PRK14989        147 RGAVVGGGLLGLEAAGALKN-LGVETHVIEFAPM  179 (847)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEecccc
Confidence            57999999999999999997 6999999999875

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=87.63  E-value=0.88  Score=39.76  Aligned_cols=32  Identities=19%  Similarity=0.145  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCe-EEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWN-ILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~-VLvLEaG~   76 (197)
                      .++|||+|..|+-+|..|++ .+.+ |.|+++..
T Consensus       174 ~vvViG~G~~g~e~A~~l~~-~g~~~Vtvi~~~~  206 (352)
T PRK12770        174 KVVVVGAGLTAVDAALEAVL-LGAEKVYLAYRRT  206 (352)
T ss_pred             EEEEECCCHHHHHHHHHHHH-cCCCeEEEEeecc
Confidence            58999999999999999986 5776 99998764

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=87.58  E-value=0.87  Score=41.05  Aligned_cols=34  Identities=24%  Similarity=0.538  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +++|||+|--|.++|+.|+++...+|++.++-..
T Consensus         3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~   36 (389)
T COG1748           3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE   36 (389)
T ss_pred             cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence            5899999999999999999854489999888744

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.53  E-value=0.89  Score=40.97  Aligned_cols=33  Identities=27%  Similarity=0.417  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      -.++|||+|..|..+|..|++ .|.+|.+.|...
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~-~G~~V~~~d~~~   38 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKK-LGAKVILTDEKE   38 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence            458999999999999999997 799999999864

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=87.37  E-value=0.94  Score=39.95  Aligned_cols=35  Identities=26%  Similarity=0.334  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~   77 (197)
                      ..-++|||.|..|+.+|..|++ .|+ ++.|+|....
T Consensus        24 ~~~VlIiG~GglGs~va~~La~-aGvg~i~lvD~D~v   59 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVR-AGIGKLTIADRDYV   59 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCcc
Confidence            5679999999999999999998 786 7888988753

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.20  E-value=0.97  Score=38.32  Aligned_cols=31  Identities=26%  Similarity=0.490  Sum_probs=27.7

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      .+.|||+|.-|+.+|..|++ .|.+|.++|.-
T Consensus         5 kI~VIG~G~mG~~ia~~la~-~g~~V~~~d~~   35 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAV-AGYDVVMVDIS   35 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHH-CCCceEEEeCC
Confidence            48899999999999999997 68999999843

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.14  E-value=1  Score=38.59  Aligned_cols=32  Identities=31%  Similarity=0.570  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+.|||+|.-|+.+|..|++ .|.+|.+++...
T Consensus         6 ~I~vIGaG~mG~~iA~~l~~-~g~~V~~~d~~~   37 (311)
T PRK06130          6 NLAIIGAGTMGSGIAALFAR-KGLQVVLIDVME   37 (311)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence            38899999999999999997 789999998643

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=86.92  E-value=1.2  Score=36.25  Aligned_cols=32  Identities=22%  Similarity=0.379  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      -++|+|.|-.|..+|.+|.+ .|.+|++.+...
T Consensus        30 ~v~I~G~G~vG~~~A~~L~~-~G~~Vvv~D~~~   61 (200)
T cd01075          30 TVAVQGLGKVGYKLAEHLLE-EGAKLIVADINE   61 (200)
T ss_pred             EEEEECCCHHHHHHHHHHHH-CCCEEEEEcCCH
Confidence            48999999999999999997 799999988654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=86.54  E-value=1.2  Score=38.11  Aligned_cols=32  Identities=28%  Similarity=0.407  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+.|||+|.-|+.+|.+|++ .+..|.++++.+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~-~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLAR-NGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCEEEEEECCH
Confidence            47899999999999999997 689999998864

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=86.39  E-value=1.2  Score=41.22  Aligned_cols=35  Identities=17%  Similarity=0.142  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHh--hCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAE--VRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae--~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|+.  ..+.+|.|+|+++..
T Consensus       189 ~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i  225 (486)
T TIGR01423       189 RVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI  225 (486)
T ss_pred             eEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence            58999999999999976653  138899999998753

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=86.30  E-value=0.77  Score=33.16  Aligned_cols=33  Identities=18%  Similarity=0.262  Sum_probs=28.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      .-.++|||+|..|..-+..|.+ .|.+|.|+-.-
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~-~gA~v~vis~~   39 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLE-AGAKVTVISPE   39 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCC-CTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-CCCEEEEECCc
Confidence            4568999999999999999997 78999998665

>PTZ00052 thioredoxin reductase; Provisional

Probab=86.21  E-value=1.1  Score=41.43  Aligned_cols=31  Identities=26%  Similarity=0.305  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|++..
T Consensus       184 ~vvIIGgG~iG~E~A~~l~~-~G~~Vtli~~~  214 (499)
T PTZ00052        184 KTLIVGASYIGLETAGFLNE-LGFDVTVAVRS  214 (499)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCcEEEEEcC
Confidence            68999999999999999997 69999999874

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=86.21  E-value=1.3  Score=39.12  Aligned_cols=36  Identities=25%  Similarity=0.355  Sum_probs=31.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~   77 (197)
                      ....++|||+|--|+.+|..|++ .|+ ++.++|....
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~V   59 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVR-AGVGKVTIVDRDYV   59 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCcc
Confidence            35789999999999999999997 787 8999998753

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=86.15  E-value=1.1  Score=41.35  Aligned_cols=31  Identities=19%  Similarity=0.187  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|+++.
T Consensus       182 ~vvIIGgG~iG~E~A~~l~~-~G~~Vtli~~~  212 (484)
T TIGR01438       182 KTLVVGASYVALECAGFLAG-IGLDVTVMVRS  212 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHH-hCCcEEEEEec
Confidence            58999999999999999997 69999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>KOG2495|consensus

Probab=86.12  E-value=0.41  Score=43.71  Aligned_cols=38  Identities=29%  Similarity=0.594  Sum_probs=31.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhh-------------CCCeEEEEecCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEV-------------RSWNILLVEAGGD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~-------------~g~~VLvLEaG~~   77 (197)
                      ...--++|||+|+.|.-+|.+|+..             ...+|.+|||.+.
T Consensus       216 kRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~  266 (491)
T KOG2495|consen  216 KRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH  266 (491)
T ss_pred             hheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh
Confidence            4467899999999999999999851             2468999999984

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=86.04  E-value=1.3  Score=40.32  Aligned_cols=33  Identities=9%  Similarity=0.099  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|..|+-+|..|.+ .|.+|.|++++..
T Consensus       274 ~VvVIGgG~~a~d~A~~l~~-~G~~Vtlv~~~~~  306 (449)
T TIGR01316       274 SVVVIGGGNTAVDSARTALR-LGAEVHCLYRRTR  306 (449)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCEEEEEeecCc
Confidence            69999999999999999997 6889999998754

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=85.85  E-value=1.4  Score=35.97  Aligned_cols=35  Identities=29%  Similarity=0.369  Sum_probs=30.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~   76 (197)
                      ....+.|||+|.-|+.+|..|++ .|. ++.++|...
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~-~Gvg~i~lvD~D~   55 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLAR-AGIGKLILVDFDV   55 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHH-cCCCEEEEECCCE
Confidence            35679999999999999999997 787 688888763

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=85.74  E-value=1.4  Score=37.66  Aligned_cols=31  Identities=29%  Similarity=0.401  Sum_probs=28.1

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +.|||+|.-|+.+|..|+. .|.+|.+.+..+
T Consensus         7 V~vIG~G~mG~~iA~~l~~-~G~~V~~~d~~~   37 (295)
T PLN02545          7 VGVVGAGQMGSGIAQLAAA-AGMDVWLLDSDP   37 (295)
T ss_pred             EEEECCCHHHHHHHHHHHh-cCCeEEEEeCCH
Confidence            8899999999999999997 799999998654

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=85.74  E-value=1.6  Score=33.06  Aligned_cols=33  Identities=30%  Similarity=0.398  Sum_probs=28.5

Q ss_pred             EEEECCChHHHHHHHHHHhhCCC-eEEEEecCCCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSW-NILLVEAGGDP   78 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~~   78 (197)
                      ++|||.|.-|+.+|..|+. .|. ++.+++.....
T Consensus         2 VliiG~GglGs~ia~~L~~-~Gv~~i~ivD~d~v~   35 (143)
T cd01483           2 VLLVGLGGLGSEIALNLAR-SGVGKITLIDFDTVE   35 (143)
T ss_pred             EEEECCCHHHHHHHHHHHH-CCCCEEEEEcCCCcC
Confidence            7899999999999999997 675 78999877554

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=85.61  E-value=1.2  Score=41.64  Aligned_cols=36  Identities=22%  Similarity=0.399  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +-.+||+|.|.-|..+|.+|.+ .+.+|+++|..+..
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~-~g~~vvvId~d~~~  452 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLA-AGIPLVVIETSRTR  452 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHH-CCCCEEEEECCHHH
Confidence            5689999999999999999997 68999999987653

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=85.61  E-value=1.4  Score=37.75  Aligned_cols=37  Identities=27%  Similarity=0.316  Sum_probs=31.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCC-CeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRS-WNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g-~~VLvLEaG~~~   78 (197)
                      ....++|||.|-.|+.+|..|++ .| .++.|+|.....
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar-~GVg~itLiD~D~V~   66 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALAR-TGIGAITLIDMDDVC   66 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHH-cCCCEEEEEeCCEec
Confidence            35689999999999999999998 67 789999977543

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=85.40  E-value=1.8  Score=32.73  Aligned_cols=33  Identities=27%  Similarity=0.362  Sum_probs=28.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCe-EEEEecC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWN-ILLVEAG   75 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~-VLvLEaG   75 (197)
                      .-.++|||+|-+|..++..|.+ .|.+ |.|+-+-
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~-~g~~~i~i~nRt   45 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAA-LGAKEITIVNRT   45 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHH-TTSSEEEEEESS
T ss_pred             CCEEEEECCHHHHHHHHHHHHH-cCCCEEEEEECC
Confidence            5579999999999999999998 4755 8888764

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=84.55  E-value=1.7  Score=35.48  Aligned_cols=31  Identities=16%  Similarity=0.243  Sum_probs=27.7

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      -++|||+|..|...+..|.+ .|.+|.|+...
T Consensus        11 ~vlVvGgG~va~rk~~~Ll~-~ga~VtVvsp~   41 (205)
T TIGR01470        11 AVLVVGGGDVALRKARLLLK-AGAQLRVIAEE   41 (205)
T ss_pred             eEEEECcCHHHHHHHHHHHH-CCCEEEEEcCC
Confidence            68999999999999999997 79999999653

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=84.42  E-value=1.7  Score=37.70  Aligned_cols=31  Identities=32%  Similarity=0.579  Sum_probs=26.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCC-eEEEEecC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSW-NILLVEAG   75 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG   75 (197)
                      -+.|||+|..|+.+|..|++ .+. +|.++|.-
T Consensus         3 KV~VIGaG~vG~~iA~~la~-~g~~~VvlvDi~   34 (305)
T TIGR01763         3 KISVIGAGFVGATTAFRLAE-KELADLVLLDVV   34 (305)
T ss_pred             EEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence            37899999999999999997 455 89999983

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=84.34  E-value=1.8  Score=35.30  Aligned_cols=31  Identities=29%  Similarity=0.389  Sum_probs=27.2

Q ss_pred             EEEEC-CChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          45 FIIVG-AGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        45 ~IIVG-sG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +.||| +|.-|..+|.+|++ .+.+|.+..+.+
T Consensus         3 I~IIGG~G~mG~ala~~L~~-~G~~V~v~~r~~   34 (219)
T TIGR01915         3 IAVLGGTGDQGKGLALRLAK-AGNKIIIGSRDL   34 (219)
T ss_pred             EEEEcCCCHHHHHHHHHHHh-CCCEEEEEEcCH
Confidence            78997 79999999999997 689999987754

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=84.28  E-value=1.5  Score=39.33  Aligned_cols=33  Identities=30%  Similarity=0.564  Sum_probs=29.2

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|+|+|..|..+|..|.+ .+..|.++|+.+.
T Consensus         2 ~viIiG~G~ig~~~a~~L~~-~g~~v~vid~~~~   34 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSG-ENNDVTVIDTDEE   34 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCcEEEEECCHH
Confidence            48999999999999999997 6899999998543

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=84.15  E-value=2  Score=34.09  Aligned_cols=32  Identities=38%  Similarity=0.331  Sum_probs=28.2

Q ss_pred             EEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD   77 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~   77 (197)
                      ++|||.|.-|+.+|..|++ .|. ++.++|....
T Consensus         2 VlViG~GglGs~ia~~La~-~Gvg~i~lvD~D~v   34 (174)
T cd01487           2 VGIAGAGGLGSNIAVLLAR-SGVGNLKLVDFDVV   34 (174)
T ss_pred             EEEECcCHHHHHHHHHHHH-cCCCeEEEEeCCEE
Confidence            7899999999999999997 686 5999998754

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=84.10  E-value=1.5  Score=39.37  Aligned_cols=32  Identities=25%  Similarity=0.373  Sum_probs=28.9

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +.|||.|..|+.+|..|++ .|.+|.+++....
T Consensus         3 I~vIGlG~~G~~lA~~La~-~G~~V~~~d~~~~   34 (411)
T TIGR03026         3 IAVIGLGYVGLPLAALLAD-LGHEVTGVDIDQE   34 (411)
T ss_pred             EEEECCCchhHHHHHHHHh-cCCeEEEEECCHH
Confidence            7899999999999999997 7999999988654

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=84.04  E-value=1.7  Score=37.37  Aligned_cols=33  Identities=24%  Similarity=0.312  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .+.|||+|..|..+|.+|++ .|.+|.+..+...
T Consensus         6 ~I~iiG~G~~G~~lA~~l~~-~G~~V~~~~r~~~   38 (308)
T PRK14619          6 TIAILGAGAWGSTLAGLASA-NGHRVRVWSRRSG   38 (308)
T ss_pred             EEEEECccHHHHHHHHHHHH-CCCEEEEEeCCCC
Confidence            48899999999999999997 7999999987643

>TIGR00518 alaDH alanine dehydrogenase

Probab=83.56  E-value=1.9  Score=38.48  Aligned_cols=33  Identities=18%  Similarity=0.222  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      -+++|||+|..|..+|..|.. .|.+|.++++..
T Consensus       168 ~~VlViGaG~vG~~aa~~a~~-lGa~V~v~d~~~  200 (370)
T TIGR00518       168 GDVTIIGGGVVGTNAAKMANG-LGATVTILDINI  200 (370)
T ss_pred             ceEEEEcCCHHHHHHHHHHHH-CCCeEEEEECCH
Confidence            459999999999999999987 688999998753

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=83.35  E-value=1.8  Score=36.74  Aligned_cols=31  Identities=26%  Similarity=0.244  Sum_probs=27.8

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +.|||.|.-|..+|..|.+ .|.+|.+++..+
T Consensus         3 I~IIG~G~mG~sla~~L~~-~g~~V~~~d~~~   33 (279)
T PRK07417          3 IGIVGLGLIGGSLGLDLRS-LGHTVYGVSRRE   33 (279)
T ss_pred             EEEEeecHHHHHHHHHHHH-CCCEEEEEECCH
Confidence            7899999999999999997 689999998754

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=83.08  E-value=1.9  Score=35.72  Aligned_cols=32  Identities=38%  Similarity=0.573  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCC---eEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSW---NILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~---~VLvLEaG~   76 (197)
                      .++|+|+|.+|..+|..|.+ .|.   +|.++++-+
T Consensus        27 rvlvlGAGgAg~aiA~~L~~-~G~~~~~i~ivdr~g   61 (226)
T cd05311          27 KIVINGAGAAGIAIARLLLA-AGAKPENIVVVDSKG   61 (226)
T ss_pred             EEEEECchHHHHHHHHHHHH-cCcCcceEEEEeCCC
Confidence            58999999999999999987 575   599999874

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=83.07  E-value=2.9  Score=28.91  Aligned_cols=32  Identities=25%  Similarity=0.424  Sum_probs=27.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEA   74 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa   74 (197)
                      -.++|+|+|..|..+|..|.+..+.+|.+.++
T Consensus        24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            35999999999999999999833678888877

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=83.06  E-value=2.3  Score=34.56  Aligned_cols=36  Identities=31%  Similarity=0.346  Sum_probs=30.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~   77 (197)
                      ...-++|||.|..|+.+|..|+. .|. ++.+++....
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~-~Gv~~i~lvD~d~v   56 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAG-AGVGTIVIVDDDHV   56 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHH-cCCCeEEEecCCEE
Confidence            36789999999999999999998 675 8899888654

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=83.01  E-value=2  Score=38.54  Aligned_cols=34  Identities=29%  Similarity=0.505  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      =.+||+|.|..|..+|..|.+ .+..|+++|.-+.
T Consensus       232 ~~iiIiG~G~~g~~l~~~L~~-~~~~v~vid~~~~  265 (453)
T PRK09496        232 KRVMIVGGGNIGYYLAKLLEK-EGYSVKLIERDPE  265 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCCeEEEEECCHH
Confidence            459999999999999999997 6899999998754

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=83.01  E-value=1.8  Score=39.15  Aligned_cols=34  Identities=21%  Similarity=0.403  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .+.|||+|.-|++.|..||+ -|+.|+.+|.-+..
T Consensus         2 kI~viGtGYVGLv~g~~lA~-~GHeVv~vDid~~K   35 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAE-LGHEVVCVDIDESK   35 (414)
T ss_pred             ceEEECCchHHHHHHHHHHH-cCCeEEEEeCCHHH
Confidence            36899999999999999998 69999999987653

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=82.92  E-value=1.9  Score=39.02  Aligned_cols=33  Identities=21%  Similarity=0.320  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -+.|||.|..|+.+|..|++ .|.+|.+++..+.
T Consensus         5 kI~VIGlG~~G~~~A~~La~-~G~~V~~~D~~~~   37 (415)
T PRK11064          5 TISVIGLGYIGLPTAAAFAS-RQKQVIGVDINQH   37 (415)
T ss_pred             EEEEECcchhhHHHHHHHHh-CCCEEEEEeCCHH
Confidence            37899999999999999997 7999999987654

>PRK12831 putative oxidoreductase; Provisional

Probab=82.58  E-value=2.1  Score=39.16  Aligned_cols=33  Identities=15%  Similarity=0.168  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|..|.-+|..|.+ .|.+|.|+++...
T Consensus       283 ~VvVIGgG~va~d~A~~l~r-~Ga~Vtlv~r~~~  315 (464)
T PRK12831        283 KVAVVGGGNVAMDAARTALR-LGAEVHIVYRRSE  315 (464)
T ss_pred             eEEEECCcHHHHHHHHHHHH-cCCEEEEEeecCc
Confidence            79999999999999999987 6888999988653

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=82.43  E-value=3.2  Score=28.82  Aligned_cols=32  Identities=31%  Similarity=0.506  Sum_probs=26.6

Q ss_pred             EEEECCChHHHHHHHHHHhhCC---CeEEEE-ecCCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRS---WNILLV-EAGGD   77 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g---~~VLvL-EaG~~   77 (197)
                      +.|||+|--|..++..|.+ .+   .+|+++ ++.+.
T Consensus         2 I~iIG~G~mg~al~~~l~~-~g~~~~~v~~~~~r~~~   37 (96)
T PF03807_consen    2 IGIIGAGNMGSALARGLLA-SGIKPHEVIIVSSRSPE   37 (96)
T ss_dssp             EEEESTSHHHHHHHHHHHH-TTS-GGEEEEEEESSHH
T ss_pred             EEEECCCHHHHHHHHHHHH-CCCCceeEEeeccCcHH
Confidence            5689999999999999997 67   888866 66544

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=82.42  E-value=2.3  Score=36.80  Aligned_cols=33  Identities=39%  Similarity=0.448  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHhhCC--CeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRS--WNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g--~~VLvLEaG~~   77 (197)
                      .+.|||+|..|+.+|..|++ .+  ..|.+++....
T Consensus         2 kI~IIGaG~VG~~~a~~l~~-~g~~~ev~l~D~~~~   36 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLL-RGLASEIVLVDINKA   36 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHH-cCCCCEEEEEECCch
Confidence            47899999999999999997 56  57999997653

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=82.38  E-value=3.4  Score=30.98  Aligned_cols=35  Identities=34%  Similarity=0.397  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~~   78 (197)
                      .-++|||.|.-|+.+|..|+. .|. ++.++|.....
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~-~Gv~~i~lvD~d~v~   38 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLAR-SGVGKITLVDDDIVE   38 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHH-HTTSEEEEEESSBB-
T ss_pred             CEEEEECcCHHHHHHHHHHHH-hCCCceeecCCccee
Confidence            458999999999999999998 575 78899887554

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=82.20  E-value=2.6  Score=33.43  Aligned_cols=34  Identities=21%  Similarity=0.320  Sum_probs=28.8

Q ss_pred             CcccEEEECCCh-HHHHHHHHHHhhCCCeEEEEecC
Q psy6708          41 QEFDFIIVGAGT-AGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        41 ~~~D~IIVGsG~-aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      +...++|||+|- .|..+|..|.+ .+.+|.++.+-
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~-~g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLN-RNATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhh-CCCEEEEEECC
Confidence            467899999996 69999999997 68889998875

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=82.06  E-value=1.7  Score=39.93  Aligned_cols=33  Identities=9%  Similarity=0.272  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|.+|+=+|..|++ ..++|.++.++..
T Consensus       206 ~VvVVG~G~Sg~diA~~L~~-~a~~V~l~~r~~~  238 (461)
T PLN02172        206 VVVVIGNFASGADISRDIAK-VAKEVHIASRASE  238 (461)
T ss_pred             EEEEECCCcCHHHHHHHHHH-hCCeEEEEEeecc
Confidence            69999999999999999997 5789999888653

>KOG2852|consensus

Probab=81.85  E-value=0.66  Score=40.58  Aligned_cols=35  Identities=29%  Similarity=0.330  Sum_probs=29.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhhC-----CCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVR-----SWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~-----g~~VLvLEaG~~   77 (197)
                      -.++|||+|..|+..|+.|++.+     ...|.++|....
T Consensus        11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~I   50 (380)
T KOG2852|consen   11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEI   50 (380)
T ss_pred             eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccc
Confidence            57899999999999999999832     278999998654

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=81.83  E-value=2.2  Score=39.65  Aligned_cols=32  Identities=25%  Similarity=0.419  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      -+-|||+|.-|.-+|..|++ .|.+|.|.|+-+
T Consensus         7 kV~VIGaG~MG~gIA~~la~-aG~~V~l~d~~~   38 (503)
T TIGR02279         7 TVAVIGAGAMGAGIAQVAAS-AGHQVLLYDIRA   38 (503)
T ss_pred             EEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence            38899999999999999997 799999998764

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=81.04  E-value=2.5  Score=38.07  Aligned_cols=31  Identities=16%  Similarity=0.245  Sum_probs=28.1

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ++|+|+|..|..+|..|++ .|.+|.+.|...
T Consensus         8 v~v~G~g~~G~s~a~~l~~-~G~~V~~~d~~~   38 (447)
T PRK02472          8 VLVLGLAKSGYAAAKLLHK-LGANVTVNDGKP   38 (447)
T ss_pred             EEEEeeCHHHHHHHHHHHH-CCCEEEEEcCCC
Confidence            7999999999999999997 799999998754

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=80.87  E-value=2.8  Score=36.13  Aligned_cols=32  Identities=28%  Similarity=0.558  Sum_probs=27.4

Q ss_pred             EEEECCChHHHHHHHHHHhhCC--CeEEEEecCCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRS--WNILLVEAGGD   77 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g--~~VLvLEaG~~   77 (197)
                      +.|||+|..|..+|..|++ .+  ..|.+++.-..
T Consensus         3 I~IIGaG~vG~~~a~~l~~-~g~~~ei~l~D~~~~   36 (306)
T cd05291           3 VVIIGAGHVGSSFAYSLVN-QGIADELVLIDINEE   36 (306)
T ss_pred             EEEECCCHHHHHHHHHHHh-cCCCCEEEEEeCCcc
Confidence            7899999999999999997 46  47999998544

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=80.85  E-value=2.3  Score=41.26  Aligned_cols=34  Identities=18%  Similarity=0.295  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      --+.|||+|..|.-+|..++. .|.+|.|+|.-+.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~-~G~~V~l~d~~~~  347 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSAS-KGVPVIMKDINQK  347 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHh-CCCeEEEEeCCHH
Confidence            358899999999999999997 7999999997654

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=80.74  E-value=2.3  Score=41.24  Aligned_cols=35  Identities=20%  Similarity=0.258  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .--+.|||+|..|+-+|..++. +|..|.++|.-..
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~-~G~~V~l~d~~~~  347 (714)
T TIGR02437       313 VKQAAVLGAGIMGGGIAYQSAS-KGTPIVMKDINQH  347 (714)
T ss_pred             cceEEEECCchHHHHHHHHHHh-CCCeEEEEeCCHH
Confidence            3458999999999999999997 7999999997643

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=80.73  E-value=3.1  Score=30.64  Aligned_cols=33  Identities=27%  Similarity=0.403  Sum_probs=26.6

Q ss_pred             EEEEC-CChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          45 FIIVG-AGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        45 ~IIVG-sG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +.||| +|..|..+...|.+.+...++.+-....
T Consensus         2 V~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~   35 (121)
T PF01118_consen    2 VAIVGATGYVGRELLRLLAEHPDFELVALVSSSR   35 (121)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred             EEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence            67999 9999999999999877777665554443

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=80.67  E-value=2.8  Score=38.05  Aligned_cols=33  Identities=15%  Similarity=0.217  Sum_probs=28.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGG   76 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~   76 (197)
                      =.++|||+|..|.-+|..|++ .+. +|.++++..
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~-~G~~~Vtlv~~~~  307 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKR-LGAESVTIVYRRG  307 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCCeEEEeeecC
Confidence            379999999999999999987 465 899998864

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=80.66  E-value=2.6  Score=38.98  Aligned_cols=34  Identities=18%  Similarity=0.252  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~   77 (197)
                      .+.|||.|..|+.+|..||+. .+.+|+.+|....
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~   37 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP   37 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence            388999999999999999972 2588999987654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=80.64  E-value=2.8  Score=36.05  Aligned_cols=33  Identities=12%  Similarity=0.299  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      -.++|||.|..|..+|.+|.. .|.+|.+.++-.
T Consensus       152 k~v~IiG~G~iG~avA~~L~~-~G~~V~v~~R~~  184 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSA-LGARVFVGARSS  184 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence            468999999999999999997 689999998754

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=80.61  E-value=2.5  Score=36.27  Aligned_cols=32  Identities=31%  Similarity=0.528  Sum_probs=27.3

Q ss_pred             EEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD   77 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~   77 (197)
                      +.|||+|..|..+|..|+. .+. .|.|+|....
T Consensus         1 I~IIGaG~vG~~ia~~la~-~~l~eV~L~Di~e~   33 (300)
T cd01339           1 ISIIGAGNVGATLAQLLAL-KELGDVVLLDIVEG   33 (300)
T ss_pred             CEEECCCHHHHHHHHHHHh-CCCcEEEEEeCCCc
Confidence            4699999999999999997 455 9999998754

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK06223 malate dehydrogenase; Reviewed

Probab=80.59  E-value=3  Score=35.77  Aligned_cols=32  Identities=31%  Similarity=0.510  Sum_probs=27.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCC-eEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSW-NILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~   76 (197)
                      .+.|||+|..|..+|..|++ .+. .|.|+|.-.
T Consensus         4 KI~VIGaG~vG~~ia~~la~-~~~~ev~L~D~~~   36 (307)
T PRK06223          4 KISIIGAGNVGATLAHLLAL-KELGDVVLFDIVE   36 (307)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCeEEEEEECCC
Confidence            58999999999999999997 454 899999743

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=80.18  E-value=2.7  Score=38.85  Aligned_cols=32  Identities=16%  Similarity=0.255  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+-|||+|.-|...|..|+. .|.+|.|.+.-+
T Consensus         6 kIavIG~G~MG~~iA~~la~-~G~~V~v~D~~~   37 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLL-AGIDVAVFDPHP   37 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence            37899999999999999997 799999998754

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=80.07  E-value=2.9  Score=37.99  Aligned_cols=35  Identities=17%  Similarity=0.178  Sum_probs=30.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .-.++|+|.|+.|..+|..+.. .|.+|+++|.-+.
T Consensus       202 GktVvViG~G~IG~~va~~ak~-~Ga~ViV~d~d~~  236 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRG-QGARVIVTEVDPI  236 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-CCCEEEEEECChh
Confidence            3468999999999999999886 6889999988654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	197
3fim_B	566	Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu		1e-15
3t37_A	526	Crystal Structure Of Pyridoxine 4-Oxidase From Meso		1e-13
1gpe_A	587	Glucose Oxidase From Penicillium Amagasakiense Leng		3e-13
3q9t_A	577	Crystal Structure Analysis Of Formate Oxidase Lengt		3e-13
1cf3_A	583	Glucose Oxidase From Apergillus Niger Length = 583		9e-11
3ljp_A	546	Crystal Structure Of Choline Oxidase V464a Mutant L		1e-04
2jbv_A	546	Crystal Structure Of Choline Oxidase Reveals Insigh		1e-04
1ju2_A	536	Crystal Structure Of The Hydroxynitrile Lyase From		2e-04
3gdn_A	521	Almond Hydroxynitrile Lyase In Complex With Benzald		2e-04
3nne_A	546	Crystal Structure Of Choline Oxidase S101a Mutant L		2e-04

>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 23/175 (13%)
Query: 42  EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNI--SYFP-ENRGQLYGSSMDW 98
           +FD+++VGAG AG+++A+RL E    ++L++EAG    N+  +  P    G +  S  DW
Sbjct: 2   DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 99  AFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKF 154
            + T  Q+G     + +    P G+ LGGSSS+H +   RG + D+D +    G + + +
Sbjct: 62  NYTTTAQAGY----NGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117
Query: 155 DNVLKYFKKSEFMT----DSSKYNEF----HGTQGPFVVK----PSPRVDKTFDT 197
           DN+ ++ +K+E +     + +   EF    HGT G   +     P+P  D+   T
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLAT 172

>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti Length = 526

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 9/127 (7%)
Query: 44  DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYF-PENRGQLYGSSMDWAFVT 102
           D +IVG G+AGS+LA+RL+E     +LL+EAG +P++   + P     L G S DW + T
Sbjct: 19  DIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYRT 78
Query: 103 EEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKFDNVL 158
           E Q+G     + +      G+ +GGSS +H++ Y RG   D+  W    G   + +D +L
Sbjct: 79  EAQAGT----AGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELL 134
Query: 159 KYFKKSE 165
             F+  E
Sbjct: 135 PVFQAIE 141

>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense Length = 587

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 15/133 (11%)
Query: 41  QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSN---ISYFPENRGQLYGSSMD 97
           + +D+II G G  G  +A++L E     +L++E G   SN   I   P   GQ++G+++D
Sbjct: 23  KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVD 82
Query: 98  WAFVTEEQSGMFLSLSNQRTT-IPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAF 152
             ++T       + L N RT  I  GKGLGGS+ I+   +TR D    D W    G + +
Sbjct: 83  QNYLT-------VPLINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGW 135
Query: 153 KFDNVLKYFKKSE 165
            +DN+ +Y KK+E
Sbjct: 136 NWDNMFEYMKKAE 148

>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 72/139 (51%), Gaps = 12/139 (8%)
Query: 42  EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG-GDPSNISYF--PENRGQLYGSSMDW 98
            FDF+IVG GTAG+ +A RLAE  +  +L+VEAG G+P +I     P +   L  S  DW
Sbjct: 6   HFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDW 65
Query: 99  AFVTEEQSGMFLSLSNQRTTIPC--GKGLGGSSSIHSLYYTRGDSRDYDEW---GYDAFK 153
           A+ T     M      +R   P   GK LGGSSS++   +  G    +D+W   G   + 
Sbjct: 66  AYKTT----MVRRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWT 121
Query: 154 FDNVLKYFKKSEFMTDSSK 172
           +D ++ Y +KS    D  +
Sbjct: 122 WDPLVPYLRKSATYHDDPR 140

>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger Length = 583

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 12/132 (9%)
Query: 41  QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENR---GQLYGSSMD 97
           +  D+II G G  G   A+RL E  + ++L++E+G   S+     E+    G ++GSS+D
Sbjct: 18  RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVD 77
Query: 98  WAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFK 153
            A+ T E     L+ +NQ   I  G GLGGS+ ++   +TR      D W    G + + 
Sbjct: 78  HAYETVE-----LATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWN 132
Query: 154 FDNVLKYFKKSE 165
           +DNV  Y  ++E
Sbjct: 133 WDNVAAYSLQAE 144

>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant Length = 546

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
Query: 41  QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPE-NR-GQLYGSSMDW 98
           +EFD+I+VG G+AG+ +A+RL+E  + ++ LVEAG D   +    + +R  +L  S  DW
Sbjct: 12  REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDW 71
Query: 99  AFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKF 154
            +  E Q      + + R  +     +GG SS +S         D DEW    G   +  
Sbjct: 72  DYPIEPQENGNSFMRHARAKV-----MGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNA 126
Query: 155 DNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPRVDKT 194
           +     +K+ E   D+      HG  GP  +   P  D T
Sbjct: 127 EAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPT 166

>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism Length = 546

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
Query: 41  QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPE-NR-GQLYGSSMDW 98
           +EFD+I+VG G+AG+ +A+RL+E  + ++ LVEAG D   +    + +R  +L  S  DW
Sbjct: 12  REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDW 71
Query: 99  AFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKF 154
            +  E Q      + + R  +     +GG SS +S         D DEW    G   +  
Sbjct: 72  DYPIEPQENGNSFMRHARAKV-----MGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNA 126
Query: 155 DNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPRVDKT 194
           +     +K+ E   D+      HG  GP  +   P  D T
Sbjct: 127 EAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPT 166

>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond Length = 536

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 20/115 (17%)
Query: 43  FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLY-------GSS 95
           +D++IVG GT+G  LA+ L+E   + +L++E G  P+         G +Y       G +
Sbjct: 27  YDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKT 84
Query: 96  MDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYD 150
               FV+E+       + N R     G+ LGG+S I++  Y R ++  Y   G D
Sbjct: 85  PVERFVSED------GIDNVR-----GRVLGGTSIINAGVYARANTSIYSASGVD 128

>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde Length = 521

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 20/115 (17%)
Query: 43  FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLY-------GSS 95
           +D++IVG GT+G  LA+ L+E   + +L++E G  P+         G +Y       G +
Sbjct: 27  YDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKT 84
Query: 96  MDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYD 150
               FV+E+       + N R     G+ LGG+S I++  Y R ++  Y   G D
Sbjct: 85  PVERFVSED------GIDNVR-----GRVLGGTSIINAGVYARANTSIYSASGVD 128

>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant Length = 546

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
Query: 41  QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPE-NR-GQLYGSSMDW 98
           +EFD+I+VG G+AG+ +A+RL+E  + ++ LVEAG D   +    + +R  +L  S  DW
Sbjct: 12  REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDW 71
Query: 99  AFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKF 154
            +  E Q      + + R  +     +GG SS ++         D DEW    G   +  
Sbjct: 72  DYPIEPQENGNSFMRHARAKV-----MGGCSSHNACIAFWAPREDLDEWEAKYGATGWNA 126
Query: 155 DNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPRVDKT 194
           +     +K+ E   D+      HG  GP  +   P  D T
Sbjct: 127 EAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPT 166

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	197
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	1e-47
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	3e-46
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	6e-44
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	1e-43
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	2e-42
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	5e-42
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	5e-41
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	5e-36
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	9e-14
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	5e-12
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	5e-09
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	7e-06
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	8e-06
3atr_A	453	Conserved archaeal protein; saturating double bond	2e-05
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	3e-05
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	4e-05
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	5e-05
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	6e-05
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	1e-04
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	2e-04
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	4e-04
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	5e-04

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587

 Score =  162 bits (413), Expect = 1e-47
 Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 27/192 (14%)

Query: 15  LSYGSEDTTTNTTSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74
           L     D  ++  S P          + +D+II G G  G  +A++L E     +L++E 
Sbjct: 2   LPAQQIDVQSSLLSDPSKVAG-----KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEK 56

Query: 75  GGDPSNISYF---PENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSI 131
           G   SN       P   GQ++G+++D  ++T         ++N+   I  GKGLGGS+ I
Sbjct: 57  GFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVPL------INNRTNNIKAGKGLGGSTLI 110

Query: 132 HSLYYTRGDSRDYDEW----GYDAFKFDNVLKYFKKSE---------FMTDSSKYNEFHG 178
           +   +TR D    D W    G + + +DN+ +Y KK+E              S     HG
Sbjct: 111 NGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHG 170

Query: 179 TQGPFVVKPSPR 190
           T G         
Sbjct: 171 TNGTVQSGARDN 182

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583

 Score =  159 bits (404), Expect = 3e-46
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 21/158 (13%)

Query: 41  QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYF---PENRGQLYGSSMD 97
           +  D+II G G  G   A+RL E  + ++L++E+G   S+           G ++GSS+D
Sbjct: 18  RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVD 77

Query: 98  WAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFK 153
            A+ T E      + +NQ   I  G GLGGS+ ++   +TR      D W    G + + 
Sbjct: 78  HAYETVEL-----ATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWN 132

Query: 154 FDNVLKYFKKSEFMTDSSKY---------NEFHGTQGP 182
           +DNV  Y  ++E     +              HG  G 
Sbjct: 133 WDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGT 170

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577

 Score =  152 bits (387), Expect = 6e-44
 Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 16/157 (10%)

Query: 41  QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYF---PENRGQLYGSSMD 97
             FDF+IVG GTAG+ +A RLAE  +  +L+VEAG            P +   L  S  D
Sbjct: 5   SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYD 64

Query: 98  WAFVTEEQSGMFLSLSNQRTTIPC--GKGLGGSSSIHSLYYTRGDSRDYDEW---GYDAF 152
           WA+ T            +R   P   GK LGGSSS++   +  G    +D+W   G   +
Sbjct: 65  WAYKTTMVRRD----DYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEW 120

Query: 153 KFDNVLKYFKKSE-FMTDSSKY---NEFHGTQGPFVV 185
            +D ++ Y +KS  +  D   Y    E  G  GP  +
Sbjct: 121 TWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPI 157

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566

 Score =  151 bits (385), Expect = 1e-43
 Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 19/159 (11%)

Query: 42  EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYF--PENRGQLYGSS-MDW 98
           +FD+++VGAG AG+++A+RL E    ++L++EAG    N+     P     L  +S  DW
Sbjct: 2   DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61

Query: 99  AFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKF 154
            + T  Q+G     + +    P G+ LGGSSS+H +   RG + D+D +    G + + +
Sbjct: 62  NYTTTAQAGY----NGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117

Query: 155 DNVLKYFKKSE--------FMTDSSKYNEFHGTQGPFVV 185
           DN+ ++ +K+E          T        HGT G   +
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSI 156

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536

 Score =  148 bits (375), Expect = 2e-42
 Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 21/146 (14%)

Query: 41  QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAF 100
             +D++IVG GT+G  LA+ L+E   + +L++E G  P+         G +Y    +   
Sbjct: 25  GSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDG 82

Query: 101 VTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDE----WGYDAFKFDN 156
            T  +  +    S        G+ LGG+S I++  Y R ++  Y      W       D 
Sbjct: 83  KTPVERFV----SEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDM-----DL 133

Query: 157 VLKYFKKSEFMTDSSKYNEFHGTQGP 182
           V + ++  E          +      
Sbjct: 134 VNQTYEWVE------DTIVYKPNSQS 153

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score =  147 bits (373), Expect = 5e-42
 Identities = 49/176 (27%), Positives = 72/176 (40%), Gaps = 19/176 (10%)

Query: 31  HTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNI------SYF 84
           H     +   +EFD+I+VG G+AG+ +A+RL+E  + ++ LVEAG D   +        +
Sbjct: 2   HIDNIENLSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRW 61

Query: 85  PENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDY 144
            E    L  S  DW +  E Q        N        K +GG SS +S         D 
Sbjct: 62  ME----LLESGYDWDYPIEPQENG-----NSFMRHARAKVMGGCSSHNSCIAFWAPREDL 112

Query: 145 DEW----GYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPRVDKTFD 196
           DEW    G   +  +     +K+ E   D+      HG  GP  +   P  D T  
Sbjct: 113 DEWEAKYGATGWNAEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGV 168

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526

 Score =  144 bits (365), Expect = 5e-41
 Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 12/173 (6%)

Query: 30  PHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISY-FPENR 88
               +   +     D +IVG G+AGS+LA+RL+E     +LL+EAG +P++     P   
Sbjct: 5   VRMTRAKVEHAPNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAW 64

Query: 89  GQLYGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW- 147
             L G S DW + TE Q+G     + +      G+ +GGSS +H++ Y RG   D+  W 
Sbjct: 65  PALQGRSYDWDYRTEAQAGT----AGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWV 120

Query: 148 ---GYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGP-FVVKPSPRVDKTFD 196
              G   + +D +L  F+  E        +  HG  GP  +  P+  V     
Sbjct: 121 DASGDRRWGWDELLPVFQAIE--DHPLGGDGIHGKGGPLPIHLPADEVSPLAR 171

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546

 Score =  130 bits (330), Expect = 5e-36
 Identities = 34/170 (20%), Positives = 56/170 (32%), Gaps = 20/170 (11%)

Query: 36  PDQWPQEFDFIIVGAGTAGSILASRLAE--VRSWNILLVEAGGD--------PSNISYFP 85
           P      +D+IIVGAG  G I A RL+E   +   +LL+E GG                 
Sbjct: 1   PTVSATPYDYIIVGAGPGGIIAADRLSEAGKK---VLLLERGGPSTKQTGGTYVAPWATS 57

Query: 86  ENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYD 145
               +     +  +  T+           +  T+  G  +GG +S++   Y   +  D+ 
Sbjct: 58  SGLTKFDIPGLFESLFTDSNPFW----WCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS 113

Query: 146 EWGYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPRVDKTF 195
                   + N   Y  K           +   T G   ++ S  V    
Sbjct: 114 SSVGWPSSWTNHAPYTSKLS---SRLPSTDHPSTDGQRYLEQSFNVVSQL 160

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 67.8 bits (165), Expect = 9e-14
 Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 21/154 (13%)

Query: 42  EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD----------------PSNISYFP 85
               +++G G   ++ A RL E      L++E G                  P   S + 
Sbjct: 5   YVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWF 63

Query: 86  ENRGQLYGSSMDWAFV----TEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDS 141
           +NR +    S  W  V     +  +G+   ++  + ++  G+G+GG S ++         
Sbjct: 64  KNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKR 123

Query: 142 RDYDEWGYDAFKFDNVLKYFKKSEFMTDSSKYNE 175
             ++E        +   +YF ++  M   +  + 
Sbjct: 124 SYFEEILPRVDSSEMYDRYFPRANSMLRVNHIDT 157

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 62.9 bits (152), Expect = 5e-12
 Identities = 23/153 (15%), Positives = 47/153 (30%), Gaps = 20/153 (13%)

Query: 42  EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG----DPSNISYFPENRGQLYGSS-- 95
               +++G+G  G++ A RL +       +VE G       S+   F         S   
Sbjct: 11  RVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWL 69

Query: 96  -------------MDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSR 142
                               +   G+  S       +  G+G+GG S ++          
Sbjct: 70  ADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRN 129

Query: 143 DYDEWGYDAFKFDNVLKYFKKSEFMTDSSKYNE 175
            ++E        +   KYF ++      +  ++
Sbjct: 130 YFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQ 162

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 54.1 bits (129), Expect = 5e-09
 Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 6/126 (4%)

Query: 29  VPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENR 88
           +P   +       ++D +IVG+G  G   A  L     + + + + G   S +      +
Sbjct: 33  LPGPDKKVPGMDIKYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKK 91

Query: 89  GQLYGSSMDWAFVTEEQSGMF-----LSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRD 143
             +        FV   Q  +      ++     T  P           +     +   R+
Sbjct: 92  NTVEYQKNIDKFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRN 151

Query: 144 YDEWGY 149
                 
Sbjct: 152 LSGQAV 157

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 44.8 bits (106), Expect = 7e-06
 Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
           ++ D +++GAG AG++ AS + +   + + +VE    P
Sbjct: 3  REKVDVLVIGAGPAGTVAASLVNK-SGFKVKIVEKQKFP 40

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 44.5 bits (105), Expect = 8e-06
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
          P+ FD I++G G  GS LAS +A  R   +LL+E    P
Sbjct: 5  PEVFDLIVIGGGPGGSTLASFVAM-RGHRVLLLEREAFP 42

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
          ++D +I+G G AGS  A +L+  R   ILLV++    
Sbjct: 6  KYDVLIIGGGFAGSSAAYQLSR-RGLKILLVDSKPWN 41

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 42.1 bits (98), Expect = 4e-05
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVE 73
            FD  +VG+G  G  +A R+A      +L++E
Sbjct: 6  ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLE 38

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 40 PQEFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDPSNISYFPENRGQLYGSSMD 97
           + FD +++GAG  G+  A  L ++    ++LLVE GG P+         G      + 
Sbjct: 34 EEAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIP 92

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 41.7 bits (97), Expect = 6e-05
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 22 TTTNTTSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74
            TN  +      +  Q  + FD++IVGAG AGS+LA RLA      +L+V+ 
Sbjct: 9  AVTNERTEQTNTTNEQQESKGFDYLIVGAGFAGSVLAERLAS-SGQRVLIVDR 60

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 25 NTTSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
          +  S    P+            I+G G AGS+    L +    ++ + E    P
Sbjct: 8  HHHSSGLVPRGSH--MTRSKVAIIGGGPAGSVAGLTLHK-LGHDVTIYERSAFP 58

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 19/74 (25%)

Query: 26 TTSVPHTPQDPDQWPQ-----EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSN 80
           +S  H        P+      FD+++VGAG  G   A  L      ++L+V+       
Sbjct: 2  GSSHHHHHHSSGLVPRGSHMPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVD------- 54

Query: 81 ISYFPENRGQLYGS 94
                  G   GS
Sbjct: 55 -------AGHAPGS 61

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNIS 82
              D +I G G  G++LA  L   +   +++VE       I+
Sbjct: 4  DNHIDVLINGCGIGGAMLAYLLGR-QGHRVVVVEQARRERAIN 45

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 39.0 bits (90), Expect = 5e-04
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 42  EFDFIIVGAGTAGSILASRLAEVR-SWNILLVEAGGDP 78
             D IIVGAG++G   A  +A+ R    + ++E+   P
Sbjct: 65  VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	197
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	100.0
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	100.0
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	100.0
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	99.97
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	99.97
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	99.96
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	99.9
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	99.89
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	99.88
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	99.79
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.76
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.68
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.48
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.48
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.41
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.41
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.41
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.39
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.39
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.38
3dme_A	369	Conserved exported protein; structural genomics, P	98.36
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.34
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.31
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.31
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.3
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.27
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.25
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.23
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.21
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.21
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.2
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.2
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.2
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.2
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.18
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.18
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.17
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.15
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.14
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.14
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.14
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.12
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.12
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.12
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.11
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.11
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.11
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.11
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.1
3atr_A	453	Conserved archaeal protein; saturating double bond	98.09
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.08
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.08
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.08
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.08
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.07
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.07
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.07
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.07
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.07
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.06
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.06
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.05
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.05
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.05
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.05
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.05
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.05
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.04
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.04
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.04
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.03
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.02
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.02
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.02
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.02
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.01
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.01
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.01
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.01
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.01
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.01
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.01
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.0
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.0
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.0
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.0
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.0
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.0
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	97.99
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.98
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.97
4dna_A	463	Probable glutathione reductase; structural genomic	97.97
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.97
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	97.97
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	97.97
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.95
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.95
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	97.95
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.95
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.95
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	97.95
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.95
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.94
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.94
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.94
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.94
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.93
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.93
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.93
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.93
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.92
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.92
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.92
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.91
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.91
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.9
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.9
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.89
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	97.89
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.88
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.88
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.87
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.87
2bry_A	497	NEDD9 interacting protein with calponin homology a	97.87
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.86
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.86
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.86
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	97.86
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	97.86
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.84
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.84
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.84
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.84
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.84
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.84
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.84
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.84
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.83
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.83
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.82
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.82
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.81
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.81
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.8
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.8
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.8
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.8
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.79
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.78
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.78
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.77
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.77
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.77
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.76
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.76
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.76
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.75
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	97.74
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.74
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.73
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.72
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.72
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.7
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.7
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.68
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.66
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.66
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.66
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.63
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.63
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	97.62
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.59
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.56
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.55
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.54
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.52
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.5
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.48
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.47
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.43
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.42
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.41
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.41
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.4
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.39
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.39
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.39
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.38
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.37
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.36
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.36
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.33
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.32
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.31
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.3
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.26
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.22
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.22
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.2
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.16
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.05
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.04
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.02
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.01
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.0
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	96.98
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	96.93
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.83
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	96.67
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.65
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.62
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	96.6
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	96.43
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	95.15
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.99
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.75
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.74
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	94.49
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.42
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	94.26
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	94.12
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	94.07
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	94.04
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	94.01
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	93.91
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	93.87
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	93.76
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	93.41
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	93.35
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	93.19
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.14
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	93.06
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	93.0
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	92.97
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	92.86
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	92.8
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	92.65
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	92.61
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	92.37
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	92.27
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	92.19
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	92.1
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	92.09
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	92.01
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	91.93
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	91.86
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	91.84
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	91.7
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	91.68
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	91.59
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	91.58
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	91.55
1ojt_A	482	Surface protein; redox-active center, glycolysis,	91.51
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	91.41
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	91.38
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	91.23
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	91.23
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	91.21
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	91.15
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	91.06
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	91.06
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	91.04
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	90.97
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	90.91
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	90.76
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	90.74
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	90.65
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	90.62
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	90.62
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	90.61
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	90.57
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	90.55
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	90.53
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	90.51
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	90.46
4g65_A	461	TRK system potassium uptake protein TRKA; structur	90.3
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	90.28
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	90.25
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	90.22
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	90.16
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	90.05
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	89.99
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	89.98
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	89.88
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	89.87
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	89.87
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	89.83
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	89.69
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	89.67
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	89.4
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	89.27
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	89.11
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	88.93
1fec_A	490	Trypanothione reductase; redox-active center, oxid	88.92
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	88.79
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	88.71
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	88.71
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	88.7
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	88.43
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	88.36
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	88.24
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	88.18
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	88.16
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	88.13
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	88.02
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	87.85
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	87.74
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	87.56
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	87.45
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	87.42
3r9u_A	315	Thioredoxin reductase; structural genomics, center	87.4
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	87.36
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	87.2
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	87.04
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	86.87
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	86.79
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	86.66
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	86.62
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	86.53
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	86.5
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	86.49
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	86.43
4dna_A	463	Probable glutathione reductase; structural genomic	86.42
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	86.35
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	86.32
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	86.32
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	86.18
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	86.1
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	86.0
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	85.83
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	85.8
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	85.78
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	85.74
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	85.68
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	85.57
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	85.27
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	85.06
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	85.04
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	84.96
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	84.89
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	84.52
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	84.52
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	84.4
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	84.35
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	84.34
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	84.15
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	84.14
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	83.61
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	83.55
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	83.53
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	83.51
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	83.31
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	83.22
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	83.16
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	83.02
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	83.0
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	82.87
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	82.76
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	82.76
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	82.46
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	82.46
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	82.32
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	82.15
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	82.13
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	82.11
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	82.08
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	82.08
3qha_A	296	Putative oxidoreductase; seattle structural genomi	82.06
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	81.97
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	81.94
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	81.77
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	81.77
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	81.74
4ezb_A	317	Uncharacterized conserved protein; structural geno	81.63
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	81.45
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	81.15
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	81.13
3tl2_A	315	Malate dehydrogenase; center for structural genomi	81.06
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	80.91
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	80.89
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	80.66
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	80.6
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	80.45
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	80.43
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	80.36
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	80.35

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=100.00  E-value=3.8e-35  Score=270.59  Aligned_cols=149  Identities=31%  Similarity=0.575  Sum_probs=132.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC--CCcccCCccccCcc-CCCCcccccccccccccccCCCCccc
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP--SNISYFPENRGQLY-GSSMDWAFVTEEQSGMFLSLSNQRTT  118 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~--~~~~~~p~~~~~~~-~~~~~w~~~~~p~~~~~~~~~~~~~~  118 (197)
                      +|||||||+|+|||++|.||+|+++.+|||||+|+..  .....+|..+.... ++.++|.|.++||+.    ++++.+.
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~~~~~~~~p~~~~~~~~~~~~~w~~~t~pq~~----~~~r~~~   77 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQAG----YNGRSIA   77 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCTTCGGGTSGGGSGGGSSSSTTBCCCBCCCCGG----GTTCCCB
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcccCCCceeCcchHHHhcCCCccccccccccCCC----CCCceEe
Confidence            6999999999999999999999789999999999876  34556776654444 378999999999985    6889999


Q ss_pred             cccccccCCCccccccccccCChhhHhhh----CCCCCCHhhHHHHHHHHhhhcCCCC--------CCCCCCCCCCEEee
Q psy6708         119 IPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKFDNVLKYFKKSEFMTDSSK--------YNEFHGTQGPFVVK  186 (197)
Q Consensus       119 ~~~g~~vGG~S~in~~~~~R~~~~df~~w----g~~~W~~d~l~pyy~~~E~~~~~~~--------~~~~hG~~Gpl~vs  186 (197)
                      +++||+|||||+||+|+|.|+++.|||.|    |+++|+|++|+|||+|+|++.++..        ++.+||.+|||+|+
T Consensus        78 ~~rGk~lGGsS~iN~m~~~Rg~~~d~d~W~~~~G~~gWs~~~~~pyf~k~E~~~~~~~~~~~~~~~~~~~hG~~Gp~~v~  157 (566)
T 3fim_B           78 YPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSIS  157 (566)
T ss_dssp             CCCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHTCTTSSHHHHHHHHHHHEEECCCTTCCCCTTTSCGGGSCBSSSEEEB
T ss_pred             ccCCcEEcCcccccceEEecCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhccCCccccccccccCCccccCCCCCeeee
Confidence            99999999999999999999999999999    8999999999999999999987632        34789999999999


Q ss_pred             cCCCCCCC
Q psy6708         187 PSPRVDKT  194 (197)
Q Consensus       187 ~~~~~~~~  194 (197)
                      ++++..|+
T Consensus       158 ~~~~~~~~  165 (566)
T 3fim_B          158 LPGFPTPL  165 (566)
T ss_dssp             SCSSCCTH
T ss_pred             cCCCCCHH
Confidence            99887664

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=100.00  E-value=9.4e-35  Score=268.75  Aligned_cols=144  Identities=31%  Similarity=0.473  Sum_probs=125.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC---CCcccCCccccCccCCCCcccccccccccccccCCCCc
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP---SNISYFPENRGQLYGSSMDWAFVTEEQSGMFLSLSNQR  116 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~---~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~  116 (197)
                      .++|||||||+|+|||++|.||+|+++.+|||||+|++.   .+....|..+....++.++|.|.++||.     .+++.
T Consensus        17 ~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~~q~-----~~~r~   91 (583)
T 3qvp_A           17 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELA-----TNNQT   91 (583)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCCT-----TTSCC
T ss_pred             CCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCcceechhhHHhhcCCcccCCccccccC-----CCCCe
Confidence            358999999999999999999999889999999999843   2334555555455577899999999986     37788


Q ss_pred             cccccccccCCCccccccccccCChhhHhhh---CCC-CCCHhhHHHHHHHHhhhcCCC---------CCCCCCCCCCCE
Q psy6708         117 TTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW---GYD-AFKFDNVLKYFKKSEFMTDSS---------KYNEFHGTQGPF  183 (197)
Q Consensus       117 ~~~~~g~~vGG~S~in~~~~~R~~~~df~~w---g~~-~W~~d~l~pyy~~~E~~~~~~---------~~~~~hG~~Gpl  183 (197)
                      +.++|||+|||||+||+|+|.|+++.|||.|   |++ +|+|++++|||+|+|++.+|.         .+..+||.+|||
T Consensus        92 ~~~~rGk~LGGsS~iN~m~y~Rg~~~Dyd~W~~~g~~~gW~~~~~lpyf~k~E~~~~~~~~~~~~~~~~~~~~hG~~Gpl  171 (583)
T 3qvp_A           92 ALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTV  171 (583)
T ss_dssp             CEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTSCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSCSSSSE
T ss_pred             eeccCceecCCcCcccceEEEeCCHHHHHHHHHhCCCCCCChhHHHHHHHHHHhccCCcchhhcccccCCccccCCCCCE
Confidence            9999999999999999999999999999999   666 999999999999999998653         346789999999


Q ss_pred             EeecC
Q psy6708         184 VVKPS  188 (197)
Q Consensus       184 ~vs~~  188 (197)
                      +|+++
T Consensus       172 ~v~~~  176 (583)
T 3qvp_A          172 HAGPR  176 (583)
T ss_dssp             EEBCC
T ss_pred             EecCC
Confidence            99998

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=100.00  E-value=1e-33  Score=255.80  Aligned_cols=146  Identities=34%  Similarity=0.613  Sum_probs=126.8

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC-CCcccCCccccCccCCCCcccccccccccccccCCCCcc
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP-SNISYFPENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRT  117 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~-~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~  117 (197)
                      ...+|||||||||+|||++|.||||+++.+|||||+|+.. .+....|..+..+.++.++|.|.++||+.    ++++.+
T Consensus        14 ~~~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~~~----~~~~~~   89 (526)
T 3t37_A           14 HAPNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYRTEAQAG----TAGRAH   89 (526)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCCCCGGGGSGGGGGGTTTSTTBCCEECCCBGG----GTTBCC
T ss_pred             CCCCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcchhChhhHhhccCCccccCccccccCC----CCCCeE
Confidence            3458999999999999999999999888999999999875 34456676666667788999999999985    578899


Q ss_pred             ccccccccCCCccccccccccCChhhHhhh----CCCCCCHhhHHHHHHHHhhhcCCCCCCCCCCCCCCEEeecCCC
Q psy6708         118 TIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPR  190 (197)
Q Consensus       118 ~~~~g~~vGG~S~in~~~~~R~~~~df~~w----g~~~W~~d~l~pyy~~~E~~~~~~~~~~~hG~~Gpl~vs~~~~  190 (197)
                      .+++|++|||||+||+|+|+|+++.|||.|    ++.+|+|++++|||+++|++....  ...|+..||+.+..+..
T Consensus        90 ~~~rG~~lGGsS~in~~~~~R~~~~Dfd~w~~~~~~~~w~~~~~~pyf~~~E~~~~~~--~~~~~~~g~~~~~~~~~  164 (526)
T 3t37_A           90 HWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLGG--DGIHGKGGPLPIHLPAD  164 (526)
T ss_dssp             EECCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHSCGGGSHHHHHHHHHHHEECTTTT--SSSSCSSCSEECBCCST
T ss_pred             eccCccEECcHHHHhhCEEecCCHHHHHHHHHhcCCCCCChhhhhhhhhhhhhccCCC--ccccCcCCCcCcccccc
Confidence            999999999999999999999999999999    678999999999999999987654  67789999999987653

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=99.97  E-value=1.5e-32  Score=253.82  Aligned_cols=143  Identities=34%  Similarity=0.545  Sum_probs=122.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC---CCcccCCccccCccCCCCcccccccccccccccCCCCcc
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP---SNISYFPENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRT  117 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~---~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~  117 (197)
                      ++|||||||+|.|||++|.||+|+++.+|||||+|+..   .+.+.+|..+....++.++|.|.++.        +++.+
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~~~~~~~~i~~P~~~~~~~~~~~dW~y~t~~--------~~r~~   76 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWAYKTTM--------VRRDD   76 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCSCGGGCHHHHCGGGGGGGTTSTTBCCEEEEE--------EEETT
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCceEECchhhhhccCCCcccceEEEE--------CCccc
Confidence            57999999999999999999999656899999999873   34456777666667788999998772        34555


Q ss_pred             c------cccccccCCCccccccccccCChhhHhhh---CCCCCCHhhHHHHHHHHhhhcCCCC----CCCCCCCCCCEE
Q psy6708         118 T------IPCGKGLGGSSSIHSLYYTRGDSRDYDEW---GYDAFKFDNVLKYFKKSEFMTDSSK----YNEFHGTQGPFV  184 (197)
Q Consensus       118 ~------~~~g~~vGG~S~in~~~~~R~~~~df~~w---g~~~W~~d~l~pyy~~~E~~~~~~~----~~~~hG~~Gpl~  184 (197)
                      .      ++|||+|||||++|+|+|.|+.+.|||.|   |+++|+|++++|||+|+|++.++..    +..+||.+|||+
T Consensus        77 ~~~~~~~~~rGkvLGGsS~iN~m~~~rg~~~dyd~W~~~G~~gW~~~~~lpyf~k~e~~~~~~~~~~~~~~~hG~~Gpl~  156 (577)
T 3q9t_A           77 YERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIP  156 (577)
T ss_dssp             EEEEEEEECCBCSTTGGGGTSCCEECCCCHHHHHTTHHHHCGGGSHHHHHHHHHHTEEEECTTCCSCGGGGGGCCSCSEE
T ss_pred             cccccccccccccccCccccCceEeccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCCccccCCccccCCCCCCEE
Confidence            5      99999999999999999999999999999   7899999999999999999987642    134799999999


Q ss_pred             eecCCCC
Q psy6708         185 VKPSPRV  191 (197)
Q Consensus       185 vs~~~~~  191 (197)
                      |+++++.
T Consensus       157 v~~~~~~  163 (577)
T 3q9t_A          157 ISHAELI  163 (577)
T ss_dssp             EEECCCC
T ss_pred             eeCCCCC
Confidence            9998764

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=99.97  E-value=1.8e-30  Score=239.91  Aligned_cols=142  Identities=32%  Similarity=0.574  Sum_probs=122.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCC--Cccc-CCccccCccCCCCcccccccccccccccCCCCcc
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPS--NISY-FPENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRT  117 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~--~~~~-~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~  117 (197)
                      .+||+||||+|++|+++|.+|+++++++|||||+|....  .... +|..+..+..+.++|.|.++|  .    ++++.+
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~p--~----~~~~~~   96 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVP--L----INNRTN   96 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCC--C----TTSCCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCccCCCcccccChhhHhhccCCcccccccccc--C----CCCcee
Confidence            589999999999999999999986799999999998753  2334 666554445567899998887  2    467889


Q ss_pred             ccccccccCCCccccccccccCChhhHhhh----CCCCCCHhhHHHHHHHHhhhcCCC---------CCCCCCCCCCCEE
Q psy6708         118 TIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKFDNVLKYFKKSEFMTDSS---------KYNEFHGTQGPFV  184 (197)
Q Consensus       118 ~~~~g~~vGG~S~in~~~~~R~~~~df~~w----g~~~W~~d~l~pyy~~~E~~~~~~---------~~~~~hG~~Gpl~  184 (197)
                      .+++|++|||+|+||+|+|+|+++.|||.|    |+++|+|++|+|||+|+|+++++.         .+..+||.+|||+
T Consensus        97 ~~~rGk~lGGsS~in~~~~~R~~~~D~d~W~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~G~~~~~~~~g~~Gpl~  176 (587)
T 1gpe_A           97 NIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQ  176 (587)
T ss_dssp             EECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCCBSSSEE
T ss_pred             eeeccccccccccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCcccccccccccCccccCCCCCEE
Confidence            999999999999999999999999999999    789999999999999999998762         2467899999999


Q ss_pred             eecC
Q psy6708         185 VKPS  188 (197)
Q Consensus       185 vs~~  188 (197)
                      ++++
T Consensus       177 v~~~  180 (587)
T 1gpe_A          177 SGAR  180 (587)
T ss_dssp             EBCC
T ss_pred             EccC
Confidence            9987

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=99.96  E-value=4.2e-29  Score=228.94  Aligned_cols=148  Identities=31%  Similarity=0.467  Sum_probs=124.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCC--CcccCCccccCccCCCCcccccccccccccccCCCCccc
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPS--NISYFPENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRTT  118 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~--~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~  118 (197)
                      .+||+||||+|++|+++|.+|+++++.+|||||+|....  .....|..+....++.++|.|.+.|++.     +++.+.
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~-----~~~~~~   86 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEPQEN-----GNSFMR   86 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCTTCHHHHBGGGGGGGTTSTTBCCEEBCCCSS-----SCTTCE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCCCCccccChhhHHhhcCCcccccccccccCC-----CCceEE
Confidence            579999999999999999999985589999999998753  2344555443333567899999998873     567889


Q ss_pred             cccccccCCCccccccccccCChhhHhhh----CCCCCCHhhHHHHHHHHhhhcCCCCCCCCCCCCCCEEeecCCCCCC
Q psy6708         119 IPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPRVDK  193 (197)
Q Consensus       119 ~~~g~~vGG~S~in~~~~~R~~~~df~~w----g~~~W~~d~l~pyy~~~E~~~~~~~~~~~hG~~Gpl~vs~~~~~~~  193 (197)
                      +++|++|||+|.+|+|+|.|+.+.||+.|    |+++|+|++|+|||+|+|+++++..+..+||.+|||+++++.+..|
T Consensus        87 ~~rGk~lGGsS~in~~~~~R~~~~d~d~w~~~~G~~gW~~~~l~pyf~k~e~~~~~~~~~~~~g~~Gpl~v~~~~~~~~  165 (546)
T 2jbv_A           87 HARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDP  165 (546)
T ss_dssp             ECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEETTCBTTBTTSCBSCSEEEEECCSCCH
T ss_pred             eecccccccCccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhccCCCCccccCCCCCCEEEecCCCCCH
Confidence            99999999999999999999999999999    6789999999999999999987421156899999999998766544

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=99.90  E-value=6.2e-24  Score=192.83  Aligned_cols=129  Identities=17%  Similarity=0.198  Sum_probs=102.5

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCCCcccCCc---cccCc-cCCCCcccccccccccc------
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPE---NRGQL-YGSSMDWAFVTEEQSGM------  108 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~~~~~~p~---~~~~~-~~~~~~w~~~~~p~~~~------  108 (197)
                      ...+||+||||+|++|+++|.+|++ ++.+|+|||+|.....  ..|.   +.... ....++|.|.++||...      
T Consensus         8 ~~~~~d~~iiG~G~~g~~~a~~l~~-~~~~v~~~e~~~~~~~--~~p~~~~~~~~~~~~~~~~w~~~~~pq~~~~~~~~~   84 (507)
T 1coy_A            8 DGDRVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDT--PGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFG   84 (507)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCCSCS--CCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBS
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHH-CCCcEEEEECCCCCCC--CCCccccccccccccccccccccccccccccccccc
Confidence            3468999999999999999999998 7999999999986432  1221   21111 23458899988887210      


Q ss_pred             -----cccC------CCCccccccccccCCCccccccccccCChhhHhhhCCCCCCHhhHH-HHHHHHhhhcCCC
Q psy6708         109 -----FLSL------SNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDAFKFDNVL-KYFKKSEFMTDSS  171 (197)
Q Consensus       109 -----~~~~------~~~~~~~~~g~~vGG~S~in~~~~~R~~~~df~~wg~~~W~~d~l~-pyy~~~E~~~~~~  171 (197)
                           ....      +++.+.+++|++|||+|+||+|+++|+++.||+.|- ++|.|++|+ |||+|+|+++++.
T Consensus        85 ~~~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~dfd~w~-~~w~~~~l~~pyy~~~E~~~~~~  158 (507)
T 1coy_A           85 INKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEIL-PSVDSNEMYNKYFPRANTGLGVN  158 (507)
T ss_dssp             CCCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHC-TTSCHHHHHHTHHHHHHHHHTCB
T ss_pred             cccccccccceeeEecCCCeEEEEecccchHHHhhCeEEeeCCHHHHHhhC-CccchhcchhHHHHHHHHHhCCC
Confidence                 0112      567889999999999999999999999999999994 579999999 9999999998753

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=99.89  E-value=2e-23  Score=189.31  Aligned_cols=129  Identities=16%  Similarity=0.218  Sum_probs=101.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCCC---cccCCccccCccCCCCcccccccccc----------
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSN---ISYFPENRGQLYGSSMDWAFVTEEQS----------  106 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~~---~~~~p~~~~~~~~~~~~w~~~~~p~~----------  106 (197)
                      .++||+||||+|++|+++|.+|++ ++.+|+|||+|.....   ....+... ......++|.+.++|+.          
T Consensus         3 ~~~~d~~iiG~G~~g~~~a~~l~~-~~~~v~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~w~~~t~p~~~~~~l~~~~~   80 (504)
T 1n4w_A            3 GGYVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGM-LNPDKRSSWFKNRTEAPLGSFLWLDVV   80 (504)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSCCCCCCCTTSSSSCCT-TSCCGGGSBSCSBCCCCTTCHHHHGGG
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEeCCCCCCCCCCcccccccc-cccCccccccccccccccccccccccc
Confidence            357999999999999999999998 7999999999985431   12222211 11233578999887761          


Q ss_pred             ----ccccc----CCCCccccccccccCCCccccccccccCChhhHhhhCCCCCCHhhHH-HHHHHHhhhcCCC
Q psy6708         107 ----GMFLS----LSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDAFKFDNVL-KYFKKSEFMTDSS  171 (197)
Q Consensus       107 ----~~~~~----~~~~~~~~~~g~~vGG~S~in~~~~~R~~~~df~~wg~~~W~~d~l~-pyy~~~E~~~~~~  171 (197)
                          ..+.+    .+++.+.+++|++|||+|+||+|+|.|+++.||+.|. ++|.|++|+ |||+|+|+++.+.
T Consensus        81 ~~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~-~~w~~~~l~~pyy~~~E~~~~~~  153 (504)
T 1n4w_A           81 NRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEIL-PRVDSSEMYDRYFPRANSMLRVN  153 (504)
T ss_dssp             CCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHC-TTSCHHHHHHTHHHHHHHHHTCB
T ss_pred             cccccccccccceecCCceEEEEeeecchHHHhhCeEEEeCCHHHHHHhc-cccchhhhhhHHHHHHHHHhCCC
Confidence                01111    1567889999999999999999999999999999995 679999999 9999999998653

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=99.88  E-value=1.1e-23  Score=192.62  Aligned_cols=122  Identities=25%  Similarity=0.308  Sum_probs=94.1

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCC--CcccCCccccCccCCCCcccccccccccccccCCCCc
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPS--NISYFPENRGQLYGSSMDWAFVTEEQSGMFLSLSNQR  116 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~--~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~  116 (197)
                      ..++|||||||+|+|||++|.||+|  +.+|||||+|+...  +....|..+..... ..+| |.+.||+.    +.++.
T Consensus        23 ~~~~yD~IIVGsG~AG~v~A~rLse--g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~-~~~~-~~t~~q~~----~~~~~   94 (536)
T 1ju2_A           23 LEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQ-QEDD-GKTPVERF----VSEDG   94 (536)
T ss_dssp             SEEEEEEEEECCSTTHHHHHHHHTT--TSCEEEECSSBCGGGSGGGGBGGGHHHHHH-SCCC-SSSSEEEE----ECTTS
T ss_pred             ccCcccEEEECccHHHHHHHHHHhc--CCcEEEEecCCCcCCCcceecchhHhhhcc-CCCc-CcCCCccc----cCCCc
Confidence            3468999999999999999999997  89999999998642  22223321111110 1134 55667654    35677


Q ss_pred             cccccccccCCCccccccccccCChhhHhhhCCCCCCHhhHHHHHHHHhhhcC
Q psy6708         117 TTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDAFKFDNVLKYFKKSEFMTD  169 (197)
Q Consensus       117 ~~~~~g~~vGG~S~in~~~~~R~~~~df~~wg~~~W~~d~l~pyy~~~E~~~~  169 (197)
                      +.+++|++|||+|+||+|+|.|+.+.||+.+| .+|+|++++|||+++|+.+.
T Consensus        95 ~~~~rg~~lGGsS~in~~~~~R~~~~d~~~~G-~~W~~~~~~p~~~~~e~~~~  146 (536)
T 1ju2_A           95 IDNVRGRVLGGTSIINAGVYARANTSIYSASG-VDWDMDLVNQTYEWVEDTIV  146 (536)
T ss_dssp             CEEEEECBTTGGGGTSCCEECBCCTTSSTTSS-SCCCHHHHHHHHHHHHHHHC
T ss_pred             ceeecceeccccccccCeEEEeCCHHHHhhcc-CCCChHHHHHHHHhhhcccC
Confidence            88999999999999999999999999998654 35999999999999999764

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=99.79  E-value=3.1e-19  Score=162.72  Aligned_cols=122  Identities=25%  Similarity=0.386  Sum_probs=83.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCCCcc--cC-CccccCccCCCCcc-----cccccccccccccC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNIS--YF-PENRGQLYGSSMDW-----AFVTEEQSGMFLSL  112 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~~~~--~~-p~~~~~~~~~~~~w-----~~~~~p~~~~~~~~  112 (197)
                      .+|||||||+|++|+++|.+|++ .+.+|||||+|.......  .. +.+........+.+     .....+...    .
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~-~g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----~   80 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSE-AGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNPF----W   80 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCCT----T
T ss_pred             CceeEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCCCCcccccccccccccccccceeeccchhHHHhhcCCCcc----c
Confidence            57999999999999999999998 699999999998642110  00 00000000000000     000001100    0


Q ss_pred             CCCccccccccccCCCccccccccccCChhhHhh---hCCCCCCHhhHHHHHHHHhhhcCC
Q psy6708         113 SNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDE---WGYDAFKFDNVLKYFKKSEFMTDS  170 (197)
Q Consensus       113 ~~~~~~~~~g~~vGG~S~in~~~~~R~~~~df~~---wg~~~W~~d~l~pyy~~~E~~~~~  170 (197)
                      ....+.+.+|++|||+|++|+|++.|+.+.||+.   |. .+|+|++  |||+|+|++.+.
T Consensus        81 ~~~~~~~~~g~~lGGsS~in~~~~~r~~~~d~d~~~~W~-~~w~~~~--p~~~k~e~~~~~  138 (546)
T 1kdg_A           81 WCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWP-SSWTNHA--PYTSKLSSRLPS  138 (546)
T ss_dssp             BCTTBSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTCC-GGGSCCH--HHHHHHHHHSCC
T ss_pred             cccccccccceeecccccccceEEecCChHHhcCcccCc-cccCccc--HHHHHHHhcCCC
Confidence            1123567899999999999999999999999997   94 6899988  999999997753

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.76  E-value=6.4e-09  Score=81.18  Aligned_cols=35  Identities=23%  Similarity=0.355  Sum_probs=32.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ++||+|||+|++|+++|..|++ .|.+|+|||+...
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~-~G~~V~v~Ek~~~   36 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTA-AGHQVHLFDKSRG   36 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence            5899999999999999999998 7999999999764

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.68  E-value=1.1e-08  Score=86.92  Aligned_cols=37  Identities=27%  Similarity=0.484  Sum_probs=33.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ++||+||||+|++|+++|..|++ .|.+|+|||+.+..
T Consensus         3 e~yDViIVGaGpaGl~~A~~La~-~G~~V~v~Er~~~~   39 (397)
T 3oz2_A            3 ETYDVLVVGGGPGGSTAARYAAK-YGLKTLMIEKRPEI   39 (397)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSST
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            47999999999999999999998 79999999997653

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.48  E-value=1.1e-07  Score=79.61  Aligned_cols=37  Identities=24%  Similarity=0.259  Sum_probs=32.2

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ..++||+||||+|+||..+|.+|++ .+++|+|+|++.
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar-~g~~v~lie~~~   39 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGR-ARKQIALFDNNT   39 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHH-TTCCEEEEECSC
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHH-CCCCEEEEeCCC
Confidence            4568999999999999999999997 799999999875

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.48  E-value=4.6e-07  Score=84.10  Aligned_cols=37  Identities=24%  Similarity=0.523  Sum_probs=33.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..||+||||+|++|+.+|..|++ .|.+|+|||++...
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~-~G~~V~liE~~~~~   81 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEID   81 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSCCC
T ss_pred             ccCCEEEECCcHHHHHHHHHHHh-CCCcEEEEeccCCC
Confidence            47999999999999999999998 79999999998764

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.41  E-value=2.1e-07  Score=79.56  Aligned_cols=38  Identities=29%  Similarity=0.489  Sum_probs=34.4

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .+.++|+||||+|.+|+.+|.+|++ .|.+|+|||++..
T Consensus        14 ~~~~~dvvIIGgG~~Gl~~A~~La~-~G~~V~llE~~~~   51 (382)
T 1ryi_A           14 MKRHYEAVVIGGGIIGSAIAYYLAK-ENKNTALFESGTM   51 (382)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSST
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHh-CCCcEEEEeCCCC
Confidence            4468999999999999999999998 7999999999854

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.41  E-value=2e-07  Score=82.72  Aligned_cols=39  Identities=26%  Similarity=0.493  Sum_probs=35.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPS   79 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~   79 (197)
                      ..+|+||||||.+|+++|++|++..|.+|+|||+.....
T Consensus         9 ~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~G   47 (513)
T 4gde_A            9 ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPG   47 (513)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCc
Confidence            479999999999999999999975599999999987753

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.41  E-value=2.1e-07  Score=78.85  Aligned_cols=37  Identities=32%  Similarity=0.455  Sum_probs=33.2

Q ss_pred             cccEEEECCChHHHHHHHHHHh-hCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAE-VRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~~~   78 (197)
                      ++|++|||+|+||+++|.+|++ +.|++|+|+|++...
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~  102 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence            5899999999999999999986 469999999998653

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.39  E-value=1.6e-07  Score=84.65  Aligned_cols=41  Identities=24%  Similarity=0.409  Sum_probs=36.7

Q ss_pred             CCCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          37 DQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        37 ~~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++..+||+||||+|.+|+++|.+|++ .|.+|+|||++...
T Consensus        36 ~~~~~~~DVvVVGaG~AGl~AA~~aa~-~G~~V~vlEk~~~~   76 (510)
T 4at0_A           36 TEWDYEADVVVAGYGIAGVAASIEAAR-AGADVLVLERTSGW   76 (510)
T ss_dssp             CCCSEEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             cccCCcCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            345678999999999999999999998 69999999998764

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.39  E-value=2.6e-07  Score=80.12  Aligned_cols=41  Identities=22%  Similarity=0.230  Sum_probs=33.6

Q ss_pred             CCCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          37 DQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        37 ~~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .+..+.||+||||+|++|+++|..|++ .|.+|+|||+.+..
T Consensus        18 ~~~~~~~dV~IVGaG~aGl~~A~~La~-~G~~V~v~E~~~~~   58 (407)
T 3rp8_A           18 LYFQGHMKAIVIGAGIGGLSAAVALKQ-SGIDCDVYEAVKEI   58 (407)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSCC
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHh-CCCCEEEEeCCCCC
Confidence            455568999999999999999999998 79999999998653

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.38  E-value=2.6e-07  Score=77.12  Aligned_cols=34  Identities=32%  Similarity=0.547  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +||+||||+|+||..+|.+|++ .|++|+|+|++.
T Consensus         6 ~yDvvIIG~GpAGl~aA~~l~~-~g~~V~liE~~~   39 (312)
T 4gcm_A            6 DFDIAIIGAGPAGMTAAVYASR-ANLKTVMIERGI   39 (312)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHH-CCCCEEEEecCC
Confidence            6999999999999999999998 799999999874

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.36  E-value=3.1e-07  Score=77.46  Aligned_cols=35  Identities=34%  Similarity=0.593  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ++||+||||+|.+|+++|.+|++ .|.+|+|||++.
T Consensus         3 ~~~dvvIIG~G~~Gl~~A~~La~-~G~~V~vlE~~~   37 (369)
T 3dme_A            3 TDIDCIVIGAGVVGLAIARALAA-GGHEVLVAEAAE   37 (369)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCC
Confidence            36999999999999999999998 799999999985

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.34  E-value=4.4e-07  Score=80.62  Aligned_cols=39  Identities=21%  Similarity=0.403  Sum_probs=35.5

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++++|+||||+|.+|+++|.+|++ .|++|+|||+....
T Consensus         8 ~~~~~dvvVIGaG~~GL~aA~~La~-~G~~V~vlE~~~~~   46 (453)
T 2bcg_G            8 IDTDYDVIVLGTGITECILSGLLSV-DGKKVLHIDKQDHY   46 (453)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCCCC
Confidence            3467999999999999999999998 79999999998765

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.31  E-value=3.9e-07  Score=75.64  Aligned_cols=34  Identities=26%  Similarity=0.292  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .||+||||+|+||..+|.+|++ .|++|+|+|++.
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~-~g~~v~liE~~~   37 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGR-SSLKPVMYEGFM   37 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-TTCCCEEECCSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHH-CCCCEEEEecCC
Confidence            6999999999999999999998 799999999865

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.31  E-value=4.7e-07  Score=78.08  Aligned_cols=36  Identities=31%  Similarity=0.532  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +++|+||||+|++|+++|..|++ .|.+|+|||++..
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~-~G~~V~vlE~~~~   38 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAE-RGHRVLVLERHTF   38 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSCT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            36999999999999999999998 7999999999864

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.30  E-value=6.5e-07  Score=78.28  Aligned_cols=37  Identities=35%  Similarity=0.535  Sum_probs=33.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~~   78 (197)
                      .++|+||||+|.+|+++|.+|++ .|. +|+|||++...
T Consensus         5 ~~~dVvIIGgG~aGlsaA~~La~-~G~~~V~vlE~~~~~   42 (438)
T 3dje_A            5 KSSSLLIVGAGTWGTSTALHLAR-RGYTNVTVLDPYPVP   42 (438)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHH-TTCCCEEEEESSCSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH-cCCCcEEEEeCCCCC
Confidence            47999999999999999999998 699 99999998753

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.25  E-value=6.6e-07  Score=77.84  Aligned_cols=34  Identities=35%  Similarity=0.577  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ||+||||+|.+|+++|.+|++ .|.+|+|||+...
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~-~G~~V~vlE~~~~   35 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTN-AGKKVLLLEGGER   35 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence            799999999999999999998 7999999999654

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.23  E-value=9.2e-07  Score=79.79  Aligned_cols=41  Identities=24%  Similarity=0.317  Sum_probs=36.0

Q ss_pred             CCCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          37 DQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        37 ~~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .+.+++||+||||+|.+|+++|.+|++ .|++|+|||+++..
T Consensus        15 ~~~~~~~dv~iiG~G~~g~~~a~~l~~-~g~~v~~~e~~~~~   55 (475)
T 3p1w_A           15 YFQGEHYDVIILGTGLKECILSGLLSH-YGKKILVLDRNPYY   55 (475)
T ss_dssp             --CCCEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             ccccccCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeccCCC
Confidence            345578999999999999999999998 79999999999765

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.21  E-value=1.3e-06  Score=74.54  Aligned_cols=35  Identities=17%  Similarity=0.327  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .++|+||||+|.+|+++|.+|++ .|.+|+|||+..
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~-~G~~V~vle~~~   39 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILAR-KGYSVHILARDL   39 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh-CCCEEEEEeccC
Confidence            46899999999999999999998 699999999875

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.20  E-value=1e-06  Score=76.35  Aligned_cols=36  Identities=28%  Similarity=0.541  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|+||||+|++|+++|..|++ .|.+|+|||+...
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~-~G~~V~v~E~~~~   39 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNK-SGFKVKIVEKQKF   39 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHT-TTCCEEEECSSCS
T ss_pred             ccCcEEEECCCHHHHHHHHHHHh-CCCCEEEEeCCCC
Confidence            36999999999999999999997 7999999999853

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.20  E-value=1.1e-06  Score=75.13  Aligned_cols=35  Identities=40%  Similarity=0.574  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ++|+||||+|.+|+.+|.+|++ .|.+|+|||++..
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~-~G~~V~vie~~~~   37 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAK-QGVKTLLVDAFDP   37 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCS
T ss_pred             cCCEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCCC
Confidence            6899999999999999999998 6999999999864

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.20  E-value=1.3e-06  Score=74.71  Aligned_cols=35  Identities=23%  Similarity=0.474  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .++|+||||+|.+|+.+|.+|++ .|.+|+|||++.
T Consensus         4 ~~~dVvIIGgGi~Gl~~A~~La~-~G~~V~lle~~~   38 (382)
T 1y56_B            4 EKSEIVVIGGGIVGVTIAHELAK-RGEEVTVIEKRF   38 (382)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence            47999999999999999999998 699999999984

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.20  E-value=9e-07  Score=75.29  Aligned_cols=35  Identities=26%  Similarity=0.521  Sum_probs=32.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ++|+||||+|.+|+++|.+|++ .|.+|+|||++..
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~-~G~~V~vle~~~~   36 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATR-AGLNVLMTDAHMP   36 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHH-TTCCEEEECSSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence            5899999999999999999998 6999999999864

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.18  E-value=1.6e-06  Score=78.06  Aligned_cols=40  Identities=28%  Similarity=0.399  Sum_probs=35.3

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +.++++|+||||+|++|+++|..|++ .|.+|+|||+.+..
T Consensus         7 ~~~~~~dVlIVGaGpaGl~~A~~La~-~G~~v~vlE~~~~~   46 (500)
T 2qa1_A            7 HHRSDAAVIVVGAGPAGMMLAGELRL-AGVEVVVLERLVER   46 (500)
T ss_dssp             -CCSBCSEEEECCSHHHHHHHHHHHH-TTCCEEEEESCCC-
T ss_pred             CccCCCCEEEECcCHHHHHHHHHHHH-CCCCEEEEeCCCCC
Confidence            56679999999999999999999998 79999999998653

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.18  E-value=1.4e-06  Score=77.11  Aligned_cols=37  Identities=30%  Similarity=0.596  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..+|+||||+|++|+++|..|++ .|.+|+|||+++..
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~-~G~~V~llEk~~~~   62 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGK-RGRRVLVIDHARAP   62 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            47999999999999999999998 69999999998753

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.17  E-value=1.3e-06  Score=75.78  Aligned_cols=35  Identities=23%  Similarity=0.374  Sum_probs=32.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +|+||||+|.+|+++|.+|++ .|.+|+|||++...
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~-~G~~V~vlE~~~~~   35 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSK-AGHEVEVFERLPIT   35 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHh-CCCceEEEeCCCCC
Confidence            589999999999999999998 69999999998653

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.15  E-value=1.7e-06  Score=76.50  Aligned_cols=37  Identities=32%  Similarity=0.618  Sum_probs=33.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ..+||+||||+|++|+++|..|++ .|.+|+|||+.+.
T Consensus        24 ~~~~dVvIIGgG~aGl~aA~~la~-~G~~V~llEk~~~   60 (447)
T 2i0z_A           24 AMHYDVIVIGGGPSGLMAAIGAAE-EGANVLLLDKGNK   60 (447)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence            346999999999999999999998 6999999999864

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.14  E-value=1.7e-06  Score=74.24  Aligned_cols=37  Identities=35%  Similarity=0.407  Sum_probs=33.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHHh-hCC-CeEEEEecCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAE-VRS-WNILLVEAGGD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae-~~g-~~VLvLEaG~~   77 (197)
                      +.++|+||||+|.+|+++|.+|++ . | .+|+|||++..
T Consensus        19 ~~~~dVvIIG~G~~Gl~~A~~La~~~-G~~~V~vlE~~~~   57 (405)
T 2gag_B           19 KKSYDAIIVGGGGHGLATAYFLAKNH-GITNVAVLEKGWL   57 (405)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHHH-CCCCEEEECSSST
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHhc-CCCcEEEEeCCCC
Confidence            468999999999999999999997 5 7 99999999863

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.14  E-value=2.2e-06  Score=69.29  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+||+||||+|++|+.+|..|++ .+.+|+|||++.
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~-~g~~v~lie~~~   36 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQ-KGVRVGLLTQSL   36 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH-TTCCEEEEESCG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH-CCCCEEEEecCC
Confidence            36999999999999999999998 699999999973

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.14  E-value=1.7e-06  Score=79.18  Aligned_cols=36  Identities=25%  Similarity=0.396  Sum_probs=33.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ++||+||||+|.+|+.+|..|++ .|.+|+|||++..
T Consensus        17 ~~~DVvVIGgGi~Gl~~A~~La~-~G~~V~LlEk~d~   52 (561)
T 3da1_A           17 KQLDLLVIGGGITGAGIALDAQV-RGIQTGLVEMNDF   52 (561)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHT-TTCCEEEEESSST
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh-CCCcEEEEECCCC
Confidence            47999999999999999999998 7999999999843

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.12  E-value=2.1e-06  Score=71.56  Aligned_cols=38  Identities=29%  Similarity=0.483  Sum_probs=33.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|+||||+|++|+.+|..|++.++.+|+|||+....
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~   75 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP   75 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSC
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCC
Confidence            46899999999999999999997239999999998653

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.12  E-value=2.3e-06  Score=78.64  Aligned_cols=37  Identities=41%  Similarity=0.548  Sum_probs=33.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhC------CCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVR------SWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~------g~~VLvLEaG~~~   78 (197)
                      .+||+||||+|++|+++|.+|++ .      |.+|+|||++...
T Consensus        34 ~~~DVvIVGaG~aGlaaA~~La~-~~~~~~~G~~V~vlEk~~~~   76 (584)
T 2gmh_A           34 EEADVVIVGAGPAGLSAATRLKQ-LAAQHEKDLRVCLVEKAAHI   76 (584)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH-HHHHTTCCCCEEEECSSSST
T ss_pred             cCCCEEEECcCHHHHHHHHHHHh-cccccCCCCcEEEEeCCCCC
Confidence            36999999999999999999997 5      8999999998653

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.12  E-value=2.4e-06  Score=73.98  Aligned_cols=39  Identities=21%  Similarity=0.371  Sum_probs=34.3

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .....+|+||||+|++|+++|..|++ .|.+|+|||+.+.
T Consensus        22 ~~~~~~dV~IVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~   60 (398)
T 2xdo_A           22 NLLSDKNVAIIGGGPVGLTMAKLLQQ-NGIDVSVYERDND   60 (398)
T ss_dssp             -CCTTCEEEEECCSHHHHHHHHHHHT-TTCEEEEEECSSS
T ss_pred             cccCCCCEEEECCCHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            34567999999999999999999997 7999999999864

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.11  E-value=2.2e-06  Score=75.20  Aligned_cols=36  Identities=31%  Similarity=0.423  Sum_probs=33.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +||+||||+|++|+++|.+|++ .|.+|+|||+++..
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~-~G~~V~vlEk~~~~   39 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAK-LGKSVTVFDNGKKI   39 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHh-CCCCEEEEeCCCCC
Confidence            6999999999999999999998 69999999998753

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.11  E-value=2.4e-06  Score=78.81  Aligned_cols=37  Identities=22%  Similarity=0.309  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ...+|+||||+|++|+++|..|++ .|.+|+|||+...
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar-~G~~V~LiEr~~~   57 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHK-LGHDVTIYERSAF   57 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSCS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHc-CCCCEEEEcCCCC
Confidence            347999999999999999999998 6999999999854

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.11  E-value=1.8e-06  Score=76.62  Aligned_cols=35  Identities=34%  Similarity=0.531  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ++||+||||+|++|+.+|.+|++ .|++|+|||++.
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~-~G~~V~liEk~~   36 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQ-LGLKTALIEKYK   36 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH-HTCCEEEEECCB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHh-CCCEEEEEeCCC
Confidence            47999999999999999999998 599999999986

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.11  E-value=2.7e-06  Score=73.81  Aligned_cols=37  Identities=43%  Similarity=0.601  Sum_probs=33.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~   78 (197)
                      +||+||||+|++|+++|..|++. ++.+|+|||++...
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~  116 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAP  116 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCcc
Confidence            58999999999999999999984 59999999998653

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.10  E-value=2e-06  Score=75.23  Aligned_cols=38  Identities=29%  Similarity=0.455  Sum_probs=34.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +++|+||||+|.+|+++|.+|++..|.+|+|||+....
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~   43 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI   43 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            47999999999999999999998338999999998765

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.09  E-value=1.9e-06  Score=76.12  Aligned_cols=35  Identities=40%  Similarity=0.617  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +||+||||+|++|+++|..|++ .|.+|+|||+.+.
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~-~G~~V~vlE~~~~   40 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSR-RGLKILLVDSKPW   40 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSS-SSCCEEEECSSCG
T ss_pred             cCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence            6999999999999999999997 7999999999764

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.08  E-value=1.9e-06  Score=76.40  Aligned_cols=34  Identities=35%  Similarity=0.530  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +|||||||.+|+++|.+|++ .|++|+|||+....
T Consensus         3 ~VvVIGaG~~GL~aA~~La~-~G~~V~VlEa~~~~   36 (501)
T 4dgk_A            3 PTTVIGAGFGGLALAIRLQA-AGIPVLLLEQRDKP   36 (501)
T ss_dssp             CEEEECCHHHHHHHHHHHHH-TTCCEEEECCC---
T ss_pred             CEEEECCcHHHHHHHHHHHH-CCCcEEEEccCCCC
Confidence            69999999999999999998 79999999997654

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.08  E-value=2.8e-06  Score=73.30  Aligned_cols=37  Identities=27%  Similarity=0.506  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|+||||+|++|+++|..|++ .|.+|+|||+.+..
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~-~G~~V~viE~~~~~   41 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGR-QGHRVVVVEQARRE   41 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHh-CCCcEEEEeCCCCC
Confidence            36999999999999999999998 79999999998653

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.08  E-value=2.5e-06  Score=77.83  Aligned_cols=36  Identities=25%  Similarity=0.362  Sum_probs=33.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ++|+||||+|++|+++|..|++ .|.+|+|||+.+..
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~-~G~~V~vlEk~~~~  161 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATD-SGAKVILIEKEPVI  161 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            7999999999999999999998 79999999998764

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.08  E-value=2.7e-06  Score=74.03  Aligned_cols=34  Identities=26%  Similarity=0.421  Sum_probs=31.5

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      |+||||+|.+|+++|.+|++ .|.+|+|||+....
T Consensus         2 dVvVIGaGiaGLsaA~~La~-~G~~V~vlE~~~~~   35 (421)
T 3nrn_A            2 RAVVVGAGLGGLLAGAFLAR-NGHEIIVLEKSAMI   35 (421)
T ss_dssp             EEEEESCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCCC
Confidence            89999999999999999998 79999999998654

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.07  E-value=1.8e-06  Score=75.69  Aligned_cols=33  Identities=39%  Similarity=0.608  Sum_probs=31.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCC-CeEEEEec
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRS-WNILLVEA   74 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g-~~VLvLEa   74 (197)
                      .++|+||||+|.+|+.+|.+|++ .| .+|+|||+
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~-~G~~~V~vlE~   55 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKV-WSGGSVLVVDA   55 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH-HHCSCEEEEES
T ss_pred             CcCCEEEECcCHHHHHHHHHHHh-CCCCcEEEEcc
Confidence            57999999999999999999998 57 89999999

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.07  E-value=2.9e-06  Score=76.43  Aligned_cols=39  Identities=28%  Similarity=0.418  Sum_probs=34.1

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .+.++|+||||+|++|+++|..|++ .|.+|+|||+.+..
T Consensus         9 ~~~~~dVlIVGaGpaGl~~A~~La~-~G~~v~vlE~~~~~   47 (499)
T 2qa2_A            9 HRSDASVIVVGAGPAGLMLAGELRL-GGVDVMVLEQLPQR   47 (499)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESCSSC
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCCCC
Confidence            4468999999999999999999998 79999999997653

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.07  E-value=3.9e-06  Score=72.86  Aligned_cols=37  Identities=22%  Similarity=0.329  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCC-CeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRS-WNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g-~~VLvLEaG~~~   78 (197)
                      +.+|+||||+|.+|+++|.+|++ .| ++|+|+|+....
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~-~g~~~v~v~E~~~~~   42 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQ-AGFHDYTILERTDHV   42 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHH-TTCCCEEEECSSSCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHh-CCCCcEEEEECCCCC
Confidence            46899999999999999999998 68 899999997654

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.07  E-value=2.4e-06  Score=74.45  Aligned_cols=36  Identities=39%  Similarity=0.660  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhC--CCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVR--SWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~--g~~VLvLEaG~~   77 (197)
                      +++|+||||+|.+|+++|..|++ .  |.+|+|||++..
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~-~~pG~~V~vlE~~~~   72 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQ-LAPGRSLLLVEEGGL   72 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH-HCTTSCEEEECSSCS
T ss_pred             CcCCEEEECCcHHHHHHHHHHHh-cCCCCeEEEEeCCCC
Confidence            46999999999999999999998 5  999999999753

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.07  E-value=3.8e-06  Score=78.37  Aligned_cols=36  Identities=25%  Similarity=0.289  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|+||||+|.+|+++|.+|++ .|.+|+|||++..
T Consensus       263 ~~~DVvIIGgGiaGlsaA~~La~-~G~~V~vlEk~~~  298 (689)
T 3pvc_A          263 RCDDIAIIGGGIVSALTALALQR-RGAVVTLYCADAQ  298 (689)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHT-TTCCEEEEESSSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHH-CCCcEEEEeCCCc
Confidence            46999999999999999999998 7999999999753

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.06  E-value=2.6e-06  Score=73.76  Aligned_cols=36  Identities=31%  Similarity=0.567  Sum_probs=32.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .+|++|||+|.+|+++|.+|++ .|++|+|+|++...
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~-~g~~v~v~E~~~~~   36 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKK-LNKKVLVIEKRNHI   36 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGG-GTCCEEEECSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHh-CCCcEEEEecCCCC
Confidence            3799999999999999999998 59999999998754

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.06  E-value=4.1e-06  Score=74.26  Aligned_cols=39  Identities=23%  Similarity=0.414  Sum_probs=35.2

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++.+|++|||+|.+|+++|.+|++ .|.+|+|||+....
T Consensus         8 ~~~~~~v~IIGaG~aGl~aA~~L~~-~g~~v~v~E~~~~~   46 (489)
T 2jae_A            8 VKGSHSVVVLGGGPAGLCSAFELQK-AGYKVTVLEARTRP   46 (489)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHH-CCCCEEEEeccCCC
Confidence            4567899999999999999999998 79999999998764

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.05  E-value=3.3e-06  Score=75.80  Aligned_cols=35  Identities=31%  Similarity=0.569  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ++||+||||+|.+|+.+|..|++ .|.+|+|||++.
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~-~G~~V~llE~~~   36 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAG-RGLSVLMLEAQD   36 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHh-CCCCEEEEECCC
Confidence            36999999999999999999998 699999999975

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.05  E-value=2.8e-06  Score=73.07  Aligned_cols=35  Identities=23%  Similarity=0.395  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ++|+||||+|++|+++|..|++ .|.+|+|||+.+.
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~-~G~~v~v~E~~~~   36 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHK-AGIDNVILERQTP   36 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHH-HTCCEEEECSSCH
T ss_pred             CccEEEECCCHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            5899999999999999999998 6999999999763

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.05  E-value=2.2e-06  Score=72.70  Aligned_cols=36  Identities=28%  Similarity=0.540  Sum_probs=32.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .+.+|+||||+|.+|+++|.+|+ . |.+|+|||++..
T Consensus         7 ~~~~dv~IIGaGi~Gls~A~~La-~-G~~V~vlE~~~~   42 (381)
T 3nyc_A            7 PIEADYLVIGAGIAGASTGYWLS-A-HGRVVVLEREAQ   42 (381)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHT-T-TSCEEEECSSSS
T ss_pred             CCcCCEEEECCcHHHHHHHHHHh-C-CCCEEEEECCCC
Confidence            35899999999999999999999 3 999999999864

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.05  E-value=2.7e-06  Score=76.52  Aligned_cols=36  Identities=42%  Similarity=0.644  Sum_probs=33.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|+||||+|++|+++|..|++ .|.+|+|||+...
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~-~G~~V~liE~~~~   41 (512)
T 3e1t_A            6 EVFDLIVIGGGPGGSTLASFVAM-RGHRVLLLEREAF   41 (512)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHT-TTCCEEEECSSCS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHh-CCCCEEEEccCCC
Confidence            47999999999999999999997 7999999999863

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.05  E-value=3e-06  Score=74.73  Aligned_cols=41  Identities=22%  Similarity=0.358  Sum_probs=32.8

Q ss_pred             CCCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          37 DQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        37 ~~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +-....+|+||||+|.+|+++|.+|++ .|.+|+|||+....
T Consensus        11 ~~~~~~~~v~iiG~G~~Gl~aa~~l~~-~g~~v~v~E~~~~~   51 (478)
T 2ivd_A           11 MPRTTGMNVAVVGGGISGLAVAHHLRS-RGTDAVLLESSARL   51 (478)
T ss_dssp             ------CCEEEECCBHHHHHHHHHHHT-TTCCEEEECSSSSS
T ss_pred             CCCCCCCcEEEECCCHHHHHHHHHHHH-CCCCEEEEEcCCCC
Confidence            556678999999999999999999997 69999999998764

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.05  E-value=3.7e-06  Score=75.04  Aligned_cols=35  Identities=20%  Similarity=0.354  Sum_probs=32.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+||+||||+|++|+.+|.+|++ .|.+|+|||++.
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~-~G~~V~liEk~~   59 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGA-LGKRVAIAEEYR   59 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHh-CcCEEEEEeCCC
Confidence            36999999999999999999998 799999999943

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.04  E-value=3.9e-06  Score=74.99  Aligned_cols=37  Identities=24%  Similarity=0.485  Sum_probs=31.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ..+||+||||+|++|+.+|.+|++ .|.+|+|||+...
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~-~G~~V~liEk~~~   59 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQ-LGMKVAVVEKRST   59 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHH-TTCCEEEEESSSS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence            346999999999999999999998 7999999998654

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.04  E-value=3.4e-06  Score=78.75  Aligned_cols=37  Identities=35%  Similarity=0.522  Sum_probs=33.7

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+++||+||||+|+||+.+|..|++ .|.+|+|||++.
T Consensus        25 ~~~~yDVIVIGgG~AGl~AAlaLAr-~G~kVlLIEk~~   61 (651)
T 3ces_A           25 YPDPFDVIIIGGGHAGTEAAMAAAR-MGQQTLLLTHNI   61 (651)
T ss_dssp             CSSCEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESCG
T ss_pred             CCCcCCEEEECChHHHHHHHHHHHh-CCCCEEEEeecc
Confidence            3468999999999999999999998 799999999874

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.04  E-value=4.4e-06  Score=73.69  Aligned_cols=38  Identities=45%  Similarity=0.720  Sum_probs=34.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ...+|++|||+|++|+++|.+|++ .|++|+|||+....
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~-~g~~v~v~E~~~~~   64 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLAS-SGQRVLIVDRRPHI   64 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHH-CCCceEEEeccCCC
Confidence            457999999999999999999998 69999999998764

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.03  E-value=3.5e-06  Score=78.55  Aligned_cols=41  Identities=29%  Similarity=0.346  Sum_probs=32.9

Q ss_pred             CCCCCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          35 DPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        35 ~~~~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .-......||+||||+|.||+.+|..|++ .|.+|+|||+..
T Consensus        14 ~~~~~~~~yDVIVIGgG~AGl~AAlaLAr-~G~kVlLIEk~~   54 (641)
T 3cp8_A           14 LVPRGSHMYDVIVVGAGHAGCEAALAVAR-GGLHCLLITSDL   54 (641)
T ss_dssp             ------CCEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESCG
T ss_pred             ccccccCcCCEEEECccHHHHHHHHHHHH-CCCcEEEEEecc
Confidence            33455668999999999999999999998 799999999874

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.02  E-value=4.5e-06  Score=69.67  Aligned_cols=35  Identities=31%  Similarity=0.578  Sum_probs=32.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      ...+|++|||+|++|+.+|.+|++ .+.+|+|||+.
T Consensus        14 ~~~~dvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~   48 (319)
T 3cty_A           14 ERDFDVVIVGAGAAGFSAAVYAAR-SGFSVAILDKA   48 (319)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             cCCCcEEEECcCHHHHHHHHHHHh-CCCcEEEEeCC
Confidence            357999999999999999999998 69999999995

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.02  E-value=2.6e-06  Score=77.75  Aligned_cols=37  Identities=24%  Similarity=0.338  Sum_probs=33.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +++|+||||+|++|+++|..|++ .|.+|+|||+.+..
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~-~G~~V~vlEk~~~~  156 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKK-AGANVILVDKAPFS  156 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-HTCCEEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            57999999999999999999998 59999999998754

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.02  E-value=5e-06  Score=77.33  Aligned_cols=36  Identities=28%  Similarity=0.495  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ..+|+||||+|.+|+++|.+|++ .|.+|+|||+...
T Consensus       271 ~~~DVvIIGgGiaGlsaA~~La~-~G~~V~vlEk~~~  306 (676)
T 3ps9_A          271 SKREAAIIGGGIASALLSLALLR-RGWQVTLYCADEA  306 (676)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHT-TTCEEEEEESSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCc
Confidence            35999999999999999999998 7999999999643

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.02  E-value=3.9e-06  Score=77.23  Aligned_cols=36  Identities=28%  Similarity=0.388  Sum_probs=33.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|+||||+|.+|+++|..|++ .|.+|+|||++..
T Consensus         6 ~~~DVvVVGaG~AGl~AA~~la~-~G~~V~vlEK~~~   41 (588)
T 2wdq_A            6 REFDAVVIGAGGAGMRAALQISQ-SGQTCALLSKVFP   41 (588)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSCG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            47999999999999999999998 6999999999864

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.01  E-value=4.6e-06  Score=74.37  Aligned_cols=35  Identities=20%  Similarity=0.372  Sum_probs=31.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      ..+||+||||+|++|..+|.+|++ .|.+|+|||++
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~-~G~~V~liEk~   41 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVL-NGARVACLDFV   41 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHH-TTCCEEEECCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH-CCCEEEEEEec
Confidence            357999999999999999999998 79999999953

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.01  E-value=3.5e-06  Score=75.67  Aligned_cols=37  Identities=35%  Similarity=0.425  Sum_probs=33.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCC-CeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRS-WNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g-~~VLvLEaG~~~   78 (197)
                      ..+|+||||+|.+|+++|.+|++ .| .+|+|||+..+.
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~-~G~~~V~VlEa~~ri   44 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQ-NGIQDCLVLEARDRV   44 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHH-TTCCSEEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh-cCCCCEEEEeCCCCC
Confidence            46899999999999999999997 78 999999998764

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.01  E-value=4.6e-06  Score=71.64  Aligned_cols=37  Identities=24%  Similarity=0.383  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..+|+||||+|++|+++|..|++ .|.+|+|||+....
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~-~G~~v~viE~~~~~   46 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQ-NGWDVRLHEKSSEL   46 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH-CCCCEEEEecCCCC
Confidence            36899999999999999999998 79999999998654

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.01  E-value=3e-06  Score=78.65  Aligned_cols=38  Identities=37%  Similarity=0.371  Sum_probs=34.4

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +..++|+||||+|.+|+.+|..|++ .|.+|+|||+...
T Consensus        15 ~~~~~DVvVVG~G~AGl~AAl~aa~-~G~~V~vlEK~~~   52 (621)
T 2h88_A           15 VDHEFDAVVVGAGGAGLRAAFGLSE-AGFNTACVTKLFP   52 (621)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSCG
T ss_pred             ccccCCEEEECccHHHHHHHHHHHH-CCCcEEEEeccCC
Confidence            3458999999999999999999998 7999999999854

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.01  E-value=4.5e-06  Score=76.47  Aligned_cols=36  Identities=28%  Similarity=0.422  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|+||||+|.+|+.+|..|++ .|.+|+|||++..
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~-rG~~V~LlE~~~~   66 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAA-SGIKTGLIEMQDF   66 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSST
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCCC
Confidence            36999999999999999999998 6999999999853

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.01  E-value=4.6e-06  Score=72.51  Aligned_cols=35  Identities=29%  Similarity=0.464  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCe-EEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWN-ILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~-VLvLEaG~~   77 (197)
                      .+|+||||+|++|+++|..|++ .|.+ |+|||+.+.
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~-~G~~~v~v~E~~~~   39 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQ-AGIGKVTLLESSSE   39 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-TTCSEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh-CCCCeEEEEECCCC
Confidence            5899999999999999999998 7999 999999765

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.01  E-value=5.9e-06  Score=68.26  Aligned_cols=34  Identities=32%  Similarity=0.354  Sum_probs=31.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      ..+|++|||+|++|+.+|.+|++ .+.+|+|+|+.
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~-~g~~v~lie~~   47 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSAR-YMLKTLVIGET   47 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             CccCEEEECccHHHHHHHHHHHH-CCCcEEEEecc
Confidence            47999999999999999999998 69999999995

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.00  E-value=4.5e-06  Score=76.57  Aligned_cols=38  Identities=29%  Similarity=0.458  Sum_probs=31.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..+||+||||+|++|+++|..|++ .|.+|+|||+.+..
T Consensus        47 ~~~~DVvIVGaG~aGL~~A~~La~-~G~~V~VlEr~~~~   84 (570)
T 3fmw_A           47 ALTTDVVVVGGGPVGLMLAGELRA-GGVGALVLEKLVEP   84 (570)
T ss_dssp             ----CEEEECCSHHHHHHHHHHHH-TTCCEEEEBSCSSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH-CCCCEEEEcCCCCC
Confidence            357999999999999999999998 79999999998653

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.00  E-value=4.8e-06  Score=76.34  Aligned_cols=36  Identities=28%  Similarity=0.413  Sum_probs=33.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ..+|+||||+|++|+.+|..|++ .|.+|+|||++..
T Consensus       106 ~~~DVVIVGgGpaGL~aA~~La~-~G~kV~VlEr~~~  141 (549)
T 3nlc_A          106 LTERPIVIGFGPCGLFAGLVLAQ-MGFNPIIVERGKE  141 (549)
T ss_dssp             CCCCCEEECCSHHHHHHHHHHHH-TTCCCEEECSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH-CCCeEEEEEccCc
Confidence            46899999999999999999998 7999999999964

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.00  E-value=6.2e-06  Score=72.77  Aligned_cols=38  Identities=21%  Similarity=0.393  Sum_probs=34.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ++++|+||||+|.+|+++|.+|++ .|++|+|+|+....
T Consensus         4 ~~~~~v~iiG~G~~gl~~a~~l~~-~g~~v~~~e~~~~~   41 (433)
T 1d5t_A            4 DEEYDVIVLGTGLTECILSGIMSV-NGKKVLHMDRNPYY   41 (433)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCCc
Confidence            357999999999999999999998 79999999998764

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.00  E-value=4e-06  Score=69.85  Aligned_cols=37  Identities=24%  Similarity=0.166  Sum_probs=32.6

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+..+|++|||+|++|+.+|.+|++ .+.+|+|+|+.+
T Consensus        19 ~~~~~~vvIIG~G~aGl~aA~~l~~-~g~~v~vie~~~   55 (338)
T 3itj_A           19 SHVHNKVTIIGSGPAAHTAAIYLAR-AEIKPILYEGMM   55 (338)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHH-TTCCCEEECCSS
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHH-CCCCEEEEecCC
Confidence            3458999999999999999999998 699999999954

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.00  E-value=4.3e-06  Score=74.33  Aligned_cols=37  Identities=27%  Similarity=0.432  Sum_probs=33.3

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ....||+||||+|++|+.+|.+|++ .|.+|+|+|++.
T Consensus        17 ~~~~~dVvIIGgG~aGl~aA~~la~-~G~~V~liE~~~   53 (478)
T 3dk9_A           17 AVASYDYLVIGGGSGGLASARRAAE-LGARAAVVESHK   53 (478)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHh-CCCeEEEEecCC
Confidence            3457999999999999999999998 699999999774

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.00  E-value=5.6e-06  Score=71.63  Aligned_cols=36  Identities=17%  Similarity=0.179  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ..+|++|||+|++|+++|..|++ .|.+|+|+|+.+.
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~   39 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRD-AGVDVDVYERSPQ   39 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence            36899999999999999999998 7999999999865

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=97.99  E-value=5.2e-06  Score=74.44  Aligned_cols=37  Identities=27%  Similarity=0.487  Sum_probs=33.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..+|+||||+|.+|+++|.+|++ .|.+|+|||+....
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~-~G~~V~vlE~~~~~   39 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHD-SGLNVVVLEARDRV   39 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHH-CCCCEEEEeCCCCC
Confidence            36899999999999999999998 69999999998664

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.98  E-value=6.1e-06  Score=67.48  Aligned_cols=35  Identities=46%  Similarity=0.627  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .+|++|||+|++|+.+|.+|++ .+.+|+|+|++..
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~~   36 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGR-ARKNILLVDAGER   36 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-TTCCEEEEECCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHh-CCCCEEEEeCCCc
Confidence            4899999999999999999998 6999999998653

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.97  E-value=3.1e-06  Score=73.95  Aligned_cols=36  Identities=25%  Similarity=0.344  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCC------CeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRS------WNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g------~~VLvLEaG~~~   78 (197)
                      .+|+||||+|.+|+++|++|++ .|      .+|+|||+....
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~-~G~~~~~~~~V~vlEa~~~~   46 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEK-EIKEKNLPLELTLVEASPRV   46 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-HHTTTTCSEEEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHH-hccccCCCCCEEEEECCCCC
Confidence            5899999999999999999998 57      999999998654

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.97  E-value=5.5e-06  Score=73.43  Aligned_cols=33  Identities=18%  Similarity=0.370  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      +||+||||+|++|+.+|.+|++ .|++|+|||++
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~-~G~~V~liEk~   37 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAA-LGKKVAIAEEF   37 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHT-TTCCEEEEESS
T ss_pred             CCcEEEECcCHHHHHHHHHHHh-CCCEEEEEeCC
Confidence            6999999999999999999998 69999999994

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.97  E-value=5.7e-06  Score=75.23  Aligned_cols=38  Identities=39%  Similarity=0.544  Sum_probs=34.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..++|+||||+|++|+++|..|++ .|.+|+|||+.+..
T Consensus        24 ~~~~dVlIVGaGpaGl~~A~~La~-~G~~V~vlEr~~~~   61 (549)
T 2r0c_A           24 PIETDVLILGGGPVGMALALDLAH-RQVGHLVVEQTDGT   61 (549)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH-CCCCEEEEeCCCCC
Confidence            457999999999999999999998 79999999998653

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=97.97  E-value=5.7e-06  Score=74.60  Aligned_cols=37  Identities=35%  Similarity=0.451  Sum_probs=33.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|+||||+|++|+++|..|++ .|.+|+|||+.+..
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~-~G~~v~viEr~~~~   40 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLAR-QGVRVLVVERRPGL   40 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHT-TTCCEEEECSSSSC
T ss_pred             ccCcEEEECcCHHHHHHHHHHHH-CCCCEEEEeCCCCC
Confidence            46999999999999999999998 79999999998653

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=97.97  E-value=5.7e-06  Score=72.46  Aligned_cols=37  Identities=30%  Similarity=0.409  Sum_probs=33.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|+||||+|.+|+++|.+|++ .|.+|+|||+....
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~-~g~~v~v~E~~~~~   40 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRK-AGLSVAVIEARDRV   40 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-CCCcEEEEECCCCC
Confidence            36899999999999999999998 69999999998654

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.95  E-value=6.2e-06  Score=68.93  Aligned_cols=35  Identities=17%  Similarity=0.395  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .||++|||+|++|+.+|.+|++ .+.+|+|||+.+.
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~-~g~~v~vie~~~~   37 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRR-SGLSYVILDAEAS   37 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-SSCCEEEECCSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence            6899999999999999999998 6999999999864

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.95  E-value=4.9e-06  Score=75.79  Aligned_cols=36  Identities=33%  Similarity=0.602  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|+||||+|.+|+++|.+|++  |.+|+|||++...
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~--G~~V~vlEk~~~~   42 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD--QHQVIVLSKGPVT   42 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT--TSCEEEECSSCTT
T ss_pred             CCCCEEEECccHHHHHHHHHHhc--CCcEEEEECCCCC
Confidence            47999999999999999999996  8999999998753

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=97.95  E-value=5.9e-06  Score=77.24  Aligned_cols=36  Identities=19%  Similarity=0.242  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|+||||+|.+|+.+|..|++ .|.+|+|||+...
T Consensus         4 ~~~DVvVIGgG~AGL~AAl~aae-~G~~V~vlEK~~~   39 (660)
T 2bs2_A            4 QYCDSLVIGGGLAGLRAAVATQQ-KGLSTIVLSLIPV   39 (660)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHT-TTCCEEEECSSCG
T ss_pred             ccccEEEECchHHHHHHHHHHHH-CCCcEEEEeccCC
Confidence            47899999999999999999998 6999999999864

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.95  E-value=8.1e-06  Score=62.75  Aligned_cols=34  Identities=32%  Similarity=0.580  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ||++|||+|++|+.+|..|++ .+.+|+|||+++.
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~-~g~~v~lie~~~~   35 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLAR-AGLKVLVLDGGRS   35 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH-TTCCEEEEECSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCCC
Confidence            799999999999999999998 6999999999863

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.95  E-value=7.9e-06  Score=68.39  Aligned_cols=36  Identities=25%  Similarity=0.373  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ..+|++|||+|++|+.+|.+|++ .+.+|+|+|+...
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~~   39 (335)
T 2zbw_A            4 DHTDVLIVGAGPTGLFAGFYVGM-RGLSFRFVDPLPE   39 (335)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSSS
T ss_pred             CcCcEEEECCCHHHHHHHHHHHh-CCCCEEEEeCCCC
Confidence            36999999999999999999997 6999999999864

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=97.95  E-value=6.4e-06  Score=76.73  Aligned_cols=35  Identities=26%  Similarity=0.367  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+||+||||+|+||+.+|..|++ .|.+|+|||++.
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr-~G~kVlLIEk~~   60 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAAR-MGAKTAMFVLNA   60 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHH-TTCCEEEEESCG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-CCCCEEEEEecc
Confidence            46999999999999999999998 799999999974

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.95  E-value=7.2e-06  Score=69.64  Aligned_cols=36  Identities=19%  Similarity=0.274  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ..+|++|||+|++|+.+|..|++ .+.+|+|||+.+.
T Consensus        13 ~~~dvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~~   48 (360)
T 3ab1_A           13 DMRDLTIIGGGPTGIFAAFQCGM-NNISCRIIESMPQ   48 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence            46999999999999999999997 7999999999764

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.94  E-value=4.2e-06  Score=77.74  Aligned_cols=39  Identities=28%  Similarity=0.327  Sum_probs=34.0

Q ss_pred             CCCcccEEEECCChHHHHHHHHHH---hhCCCeEEEEecCCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLA---EVRSWNILLVEAGGD   77 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~La---e~~g~~VLvLEaG~~   77 (197)
                      ...++|+||||+|.+|+++|..|+   +..|.+|+|||++..
T Consensus        19 ~~~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~   60 (643)
T 1jnr_A           19 EVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   60 (643)
T ss_dssp             EEEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             eeccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence            445799999999999999999999   325899999999874

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.94  E-value=6.4e-06  Score=73.11  Aligned_cols=36  Identities=28%  Similarity=0.478  Sum_probs=33.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ++|+||||+|.+|+++|.+|++ .|.+|+|||+....
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~-~g~~v~v~E~~~~~   74 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTV-AGFKTLLLEARDRI   74 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHH-TTCCEEEECSSSBS
T ss_pred             CCCEEEECCcHHHHHHHHHHHH-CCCCEEEEeCCCCC
Confidence            4999999999999999999998 79999999997654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.94  E-value=6.7e-06  Score=73.75  Aligned_cols=34  Identities=29%  Similarity=0.470  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .||+||||+|+||..+|.+|++ .|.+|+|+|++.
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~-~G~~V~liE~~~   41 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKK-HTDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT-TCSCEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHh-CCCcEEEEeCCC
Confidence            5999999999999999999997 799999999975

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.94  E-value=4.7e-06  Score=70.64  Aligned_cols=32  Identities=22%  Similarity=0.238  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHHhhCC------CeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRS------WNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g------~~VLvLEaG~   76 (197)
                      |+||||+|.+|+++|..|++. |      .+|+|||++.
T Consensus         2 dVvIIGgGi~Gls~A~~La~~-G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHER-YHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-HTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHh-ccccCCCceEEEEECCC
Confidence            899999999999999999984 5      8999999985

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.93  E-value=6.5e-06  Score=72.46  Aligned_cols=35  Identities=20%  Similarity=0.387  Sum_probs=32.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCC--eEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSW--NILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~--~VLvLEaG~~~   78 (197)
                      +|+||||+|.+|+++|++|++ .|.  +|+|||+....
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~-~G~~~~V~vlEa~~~~   39 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSR-APCPPKVVLVESSERL   39 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHT-SSSCCEEEEECSSSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHh-CCCCCcEEEEeCCCCC
Confidence            699999999999999999998 688  99999997654

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.93  E-value=7.7e-06  Score=67.92  Aligned_cols=36  Identities=22%  Similarity=0.331  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ..+|++|||+|++|+.+|..|++ .+.+|+|+|+.+.
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~~   41 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGM-RQASVKIIESLPQ   41 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHH-CCCCEEEEEcCCC
Confidence            36899999999999999999998 7999999999864

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.93  E-value=6.8e-06  Score=73.41  Aligned_cols=34  Identities=24%  Similarity=0.450  Sum_probs=31.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      .+||+||||+|+||..+|.+|++ .|.+|+|||+.
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~-~G~~V~liEk~   38 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQ-LGKKVAVADYV   38 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh-CCCeEEEEEec
Confidence            47999999999999999999998 69999999973

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.93  E-value=1e-05  Score=75.50  Aligned_cols=41  Identities=27%  Similarity=0.493  Sum_probs=36.9

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCC
Q psy6708          38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPS   79 (197)
Q Consensus        38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~   79 (197)
                      +.+.+|||||||+|..|+++|..|++ .|++||+||+.....
T Consensus         4 ~~~~~~D~~i~GtGl~~~~~a~~~~~-~g~~vl~id~~~~~g   44 (650)
T 1vg0_A            4 NLPSDFDVIVIGTGLPESIIAAACSR-SGQRVLHVDSRSYYG   44 (650)
T ss_dssp             CCCSBCSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSSC
T ss_pred             cCCCcCCEEEECCcHHHHHHHHHHHh-CCCEEEEEcCCCccc
Confidence            34568999999999999999999998 799999999998863

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.92  E-value=6.4e-06  Score=72.48  Aligned_cols=35  Identities=29%  Similarity=0.271  Sum_probs=31.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ..+|+||||+|++|+++|..|++ .|.+|+|||+..
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~-~G~~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQ-HDVDVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHH-TTCEEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHH-CCCeEEEEcCCC
Confidence            35899999999999999999998 799999999876

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.92  E-value=6.7e-06  Score=75.20  Aligned_cols=34  Identities=24%  Similarity=0.517  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +||+||||+|+||.++|.++++ .|++|+|||+..
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~-~G~kValIE~~~   75 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAA-HGARVLLFDYVK   75 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHT-TTCCEEEECCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccc
Confidence            4999999999999999999998 799999999754

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.92  E-value=7.8e-06  Score=68.37  Aligned_cols=34  Identities=29%  Similarity=0.578  Sum_probs=32.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      ..+|++|||+|++|+.+|.+|++ .+.+|+|||+.
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~   40 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGR-AQLSTLILEKG   40 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHH-cCCcEEEEeCC
Confidence            47999999999999999999998 69999999998

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.91  E-value=6.3e-06  Score=77.06  Aligned_cols=37  Identities=24%  Similarity=0.300  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHhh-----CCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEV-----RSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~-----~g~~VLvLEaG~~   77 (197)
                      .+||+||||+|.||+.+|.+|++.     +|.+|+|||++..
T Consensus        21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~   62 (662)
T 3gyx_A           21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASL   62 (662)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCT
T ss_pred             EEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCC
Confidence            379999999999999999999983     2899999999865

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.91  E-value=1.1e-05  Score=73.27  Aligned_cols=38  Identities=37%  Similarity=0.592  Sum_probs=34.4

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .+..+|+||||+|++|+.+|.+|++ .|.+|+|||+++.
T Consensus        13 ~~~~~dVvIIGaG~aGl~aA~~L~~-~G~~v~iiE~~~~   50 (542)
T 1w4x_A           13 PPEEVDVLVVGAGFSGLYALYRLRE-LGRSVHVIETAGD   50 (542)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCCCCEEEECccHHHHHHHHHHHh-CCCCEEEEeCCCC
Confidence            4568999999999999999999998 6999999999864

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.90  E-value=8.2e-06  Score=72.45  Aligned_cols=35  Identities=37%  Similarity=0.723  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +||+||||+|++|+.+|.+|++ .|.+|+|||+...
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~-~G~~V~liEk~~~   38 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAK-AKYNVLMADPKGE   38 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-TTCCEEEECTTSS
T ss_pred             cceEEEECCCHHHHHHHHHHHh-CCCeEEEEECCCC
Confidence            6999999999999999999998 7999999996554

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.90  E-value=8.9e-06  Score=72.23  Aligned_cols=37  Identities=22%  Similarity=0.473  Sum_probs=33.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +..||+||||+|++|..+|.+|++ .+.+|+|||+.+.
T Consensus         4 ~~~~dvvIIGgG~aGl~aA~~l~~-~g~~V~liE~~~~   40 (474)
T 1zmd_A            4 PIDADVTVIGSGPGGYVAAIKAAQ-LGFKTVCIEKNET   40 (474)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEECSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCCC
Confidence            457999999999999999999998 6999999999863

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.89  E-value=9.1e-06  Score=72.19  Aligned_cols=37  Identities=27%  Similarity=0.414  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +.+|+||||+|.+|+++|.+|++ .|.+|+|||+....
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~-~g~~v~v~E~~~~~   48 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKI-HGLNVTVFEAEGKA   48 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHT-TSCEEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH-CCCcEEEEEeCCCC
Confidence            46899999999999999999997 79999999998764

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=97.89  E-value=9e-06  Score=70.02  Aligned_cols=37  Identities=32%  Similarity=0.453  Sum_probs=32.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~   78 (197)
                      ++|++|||+|++|+.+|..|++. ++.+|+|+|++...
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~  102 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccc
Confidence            57999999999999999999972 28999999997653

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.88  E-value=1e-05  Score=72.20  Aligned_cols=35  Identities=34%  Similarity=0.615  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+||+||||+|++|..+|.+|++ .|.+|+|+|++.
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~-~g~~V~liE~~~   44 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAAS-YGAKTLLVEAKA   44 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH-TSCCEEEEESSC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHH-CCCcEEEEeCCC
Confidence            47999999999999999999998 799999999974

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.88  E-value=1.6e-05  Score=71.77  Aligned_cols=38  Identities=29%  Similarity=0.414  Sum_probs=34.5

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +.+..+|+||||+|++|+.+|.+|++ .|.+|+|||++.
T Consensus        39 ~~~~~~dVvIIGgG~aGl~aA~~l~~-~G~~V~liE~~~   76 (523)
T 1mo9_A           39 NDPREYDAIFIGGGAAGRFGSAYLRA-MGGRQLIVDRWP   76 (523)
T ss_dssp             TCCSCBSEEEECCSHHHHHHHHHHHH-TTCCEEEEESSS
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHH-CCCCEEEEeCCC
Confidence            34568999999999999999999998 699999999987

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.87  E-value=1.2e-05  Score=68.18  Aligned_cols=34  Identities=29%  Similarity=0.515  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGG   76 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~   76 (197)
                      ++|++|||+|++|+.+|.+|++ .+. +|+|||+..
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~-~g~~~v~lie~~~   38 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKD-FGITDVIILEKGT   38 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-TTCCCEEEECSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHH-cCCCcEEEEecCC
Confidence            6899999999999999999997 688 999999985

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.87  E-value=1.2e-05  Score=72.66  Aligned_cols=35  Identities=23%  Similarity=0.471  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+||+||||+|+||..+|.+|++ .|.+|+|||+.+
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~-~G~~V~liEk~~   65 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQ-YGKKVMVLDFVT   65 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHH-TTCCEEEECCCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh-CCCeEEEEeccC
Confidence            47999999999999999999998 699999999853

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=97.87  E-value=1.4e-05  Score=71.92  Aligned_cols=38  Identities=29%  Similarity=0.253  Sum_probs=34.1

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ...+|++|||+|++|+.+|..|++ .|.+|+|||+.+..
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~-~G~~V~liEk~~~~  127 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELAL-LGARVVLVEKRIKF  127 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCSSC
T ss_pred             cCCCCEEEECccHHHHHHHHHHHH-CCCeEEEEEecccc
Confidence            357899999999999999999998 69999999998653

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.86  E-value=9.1e-06  Score=75.01  Aligned_cols=36  Identities=33%  Similarity=0.279  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCC--CeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRS--WNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g--~~VLvLEaG~~   77 (197)
                      .++|+||||+|.+|+.+|..|++ .|  .+|+|||+...
T Consensus         4 ~~~DVvIVG~G~AGl~aAl~la~-~G~~~~V~vlEk~~~   41 (602)
T 1kf6_A            4 FQADLAIVGAGGAGLRAAIAAAQ-ANPNAKIALISKVYP   41 (602)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH-HCTTCCEEEEESSCG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHh-cCCCCcEEEEeCCCC
Confidence            36899999999999999999998 57  99999999854

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.86  E-value=1.1e-05  Score=71.49  Aligned_cols=35  Identities=29%  Similarity=0.480  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +.||+||||+|++|..+|.+|++ .+.+|+|+|++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~-~g~~V~liE~~~   37 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAM-YGQKCALIEAKE   37 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHT-TTCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHh-CCCeEEEEcCCC
Confidence            47999999999999999999997 799999999974

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.86  E-value=1.1e-05  Score=66.75  Aligned_cols=32  Identities=31%  Similarity=0.426  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCC-eEEEEecC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSW-NILLVEAG   75 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG   75 (197)
                      ||++|||+|++|+.+|..|++ .+. +|+|+|+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~-~g~~~v~lie~~   34 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATR-GGVKNAVLFEKG   34 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH-TTCSSEEEECSS
T ss_pred             ceEEEECccHHHHHHHHHHHH-CCCCcEEEEcCC
Confidence            799999999999999999998 699 99999996

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=97.86  E-value=1e-05  Score=68.37  Aligned_cols=35  Identities=29%  Similarity=0.419  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhh--CCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEV--RSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~--~g~~VLvLEaG~~   77 (197)
                      +|+||||+|++|+++|..|++.  .|.+|+|+|++..
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~   38 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADD   38 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCC
Confidence            5899999999999999999961  5899999999854

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=97.86  E-value=1.1e-05  Score=76.69  Aligned_cols=36  Identities=36%  Similarity=0.665  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~   77 (197)
                      .++|+||||+|.+|+++|++|++ .|. +|+|||++..
T Consensus         3 ~~~dVvIIGgGi~Gls~A~~La~-~G~~~V~vlE~~~~   39 (830)
T 1pj5_A            3 STPRIVIIGAGIVGTNLADELVT-RGWNNITVLDQGPL   39 (830)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHH-TTCCCEEEECSSCT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHh-CCCCcEEEEeCCCC
Confidence            46899999999999999999998 687 9999999864

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.84  E-value=1.3e-05  Score=71.31  Aligned_cols=35  Identities=31%  Similarity=0.552  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +.||+||||+|++|..+|.+|++ .+.+|+|+|++.
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~-~g~~V~liE~~~   37 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAA-FGKRVALIESKA   37 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHh-CCCcEEEEcCCC
Confidence            36999999999999999999998 799999999974

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.84  E-value=1.3e-05  Score=70.85  Aligned_cols=35  Identities=29%  Similarity=0.503  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +||+||||+|++|..+|.+|++ .+.+|+|+|+.+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~-~g~~V~lie~~~~   35 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQ-LGMKVGVVEKEKA   35 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSSS
T ss_pred             CCCEEEECCChhHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            4899999999999999999998 6999999999853

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.84  E-value=1.4e-05  Score=71.69  Aligned_cols=34  Identities=32%  Similarity=0.570  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +||+||||+|++|..+|.+|++ .+.+|+|+|++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~-~g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAAR-HNAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHH-TTCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCC
Confidence            5899999999999999999998 699999999985

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.84  E-value=1.4e-05  Score=69.92  Aligned_cols=37  Identities=27%  Similarity=0.425  Sum_probs=33.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecC-CC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG-GD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG-~~   77 (197)
                      +..+|++|||+|++|+++|.+|++ .|.+|+|+|+. ..
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~-~G~~V~VlE~~~~~   79 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTR-AGHDVTILEANANR   79 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHH-TSCEEEEECSCSSC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHH-CCCcEEEEeccccc
Confidence            357899999999999999999998 79999999998 54

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.84  E-value=1.4e-05  Score=72.30  Aligned_cols=37  Identities=38%  Similarity=0.467  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhh--CCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEV--RSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~--~g~~VLvLEaG~~   77 (197)
                      ..+|+||||+|++|+++|..|++.  .|.+|+|||+...
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   42 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAI   42 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence            368999999999999999999962  5899999999653

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.84  E-value=1.1e-05  Score=71.10  Aligned_cols=35  Identities=34%  Similarity=0.410  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCC--CeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRS--WNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g--~~VLvLEaG~~   77 (197)
                      .+|+||||+|.+|+++|++|++ .|  .+|+|||+...
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~-~g~~~~v~v~E~~~~   40 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAER-AFPDLNITLLEAGER   40 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHH-HCTTSEEEEECSSSS
T ss_pred             cccEEEECCCHHHHHHHHHHHH-hCCCCCEEEEECCCC
Confidence            5899999999999999999998 57  99999999755

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.84  E-value=1.2e-05  Score=71.78  Aligned_cols=31  Identities=23%  Similarity=0.319  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      |+||||+|++|+++|.+|++ .|.+|+|||++
T Consensus         1 DVvVIG~G~AGl~aA~~la~-~G~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRR-AGKKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-TTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHH-CCCCEEEEeCC
Confidence            89999999999999999998 69999999998

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.84  E-value=1.4e-05  Score=70.89  Aligned_cols=35  Identities=23%  Similarity=0.488  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +||+||||+|++|..+|.+|++ .|.+|+|+|+.+.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~-~g~~V~lie~~~~   36 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQ-LGMKTACVEKRGA   36 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            5899999999999999999998 6999999999853

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.83  E-value=1.4e-05  Score=70.65  Aligned_cols=34  Identities=35%  Similarity=0.534  Sum_probs=31.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      .+||+||||+|++|..+|.+|++ .+.+|+|+|+.
T Consensus         2 ~~~dvvIIGgG~aGl~aA~~l~~-~g~~V~lie~~   35 (455)
T 1ebd_A            2 IETETLVVGAGPGGYVAAIRAAQ-LGQKVTIVEKG   35 (455)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh-CCCeEEEEECC
Confidence            46999999999999999999998 69999999997

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.83  E-value=2.7e-05  Score=72.11  Aligned_cols=38  Identities=37%  Similarity=0.562  Sum_probs=33.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ++++|+||||+|++|+++|..|++..|.+|+|||+.+.
T Consensus        30 ~~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~   67 (639)
T 2dkh_A           30 PSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEG   67 (639)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSS
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            45899999999999999999999514999999999865

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.82  E-value=1.3e-05  Score=66.33  Aligned_cols=32  Identities=31%  Similarity=0.454  Sum_probs=29.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEA   74 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa   74 (197)
                      +||++|||+|++|+.+|.+|++ .+.+|+|||.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~-~g~~v~li~~   32 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSAR-KGIRTGLMGE   32 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHT-TTCCEEEECS
T ss_pred             CCCEEEECcCHHHHHHHHHHHH-CCCcEEEEeC
Confidence            4899999999999999999997 6999999986

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.82  E-value=1.2e-05  Score=69.18  Aligned_cols=35  Identities=34%  Similarity=0.695  Sum_probs=31.2

Q ss_pred             cEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~   78 (197)
                      |+||||+|++|+++|..|++. +|.+|+|||+.+..
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            899999999999999999982 39999999998653

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.81  E-value=1.5e-05  Score=70.58  Aligned_cols=36  Identities=28%  Similarity=0.504  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +.||+||||+|++|..+|.+|++ .+.+|+|+|+.+.
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~-~g~~V~liE~~~~   40 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQ-LGFKTTCIEKRGA   40 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHH-HTCCEEEEECSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            47999999999999999999998 5999999999853

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.81  E-value=1.1e-05  Score=71.05  Aligned_cols=37  Identities=35%  Similarity=0.486  Sum_probs=33.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCC-----CeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRS-----WNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g-----~~VLvLEaG~~~   78 (197)
                      +.||+||||+|++|+.+|..|++ .+     .+|+|||+.+..
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~-~g~~~~~~~v~liE~~~~~   70 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQE-RAQAQGALEVLFLDKQGDY   70 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHH-HHHHHCCCCEEEEESCSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh-cccccCcccEEEEecCCCC
Confidence            57999999999999999999998 47     899999998753

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.80  E-value=1.7e-05  Score=70.48  Aligned_cols=35  Identities=34%  Similarity=0.573  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+||+||||+|++|+.+|.+|++ .|.+|+|+|+.+
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~-~G~~V~liE~~~   38 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQ-LGFNTACVEKRG   38 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-CCCeEEEEecCC
Confidence            36999999999999999999998 699999999964

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.80  E-value=1.9e-05  Score=68.72  Aligned_cols=36  Identities=25%  Similarity=0.538  Sum_probs=33.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ++|++|||+|.+|+++|.+|++ .|++|+|+|+....
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~-~g~~v~v~E~~~~~   38 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAE-KGHQVHIIDQRDHI   38 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TTCEEEEEESSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHH-CCCcEEEEEecCCc
Confidence            4899999999999999999997 69999999998664

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.80  E-value=1.1e-05  Score=72.01  Aligned_cols=36  Identities=39%  Similarity=0.489  Sum_probs=30.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhh--CCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEV--RSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~--~g~~VLvLEaG~~   77 (197)
                      .+|+||||+|++|+++|..|++.  .|.+|+|||+...
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            47999999999999999999971  5899999999753

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.80  E-value=1.9e-05  Score=69.91  Aligned_cols=35  Identities=23%  Similarity=0.386  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +.+|+||||+|++|+.+|.+|++ .+.+|+|||++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~-~g~~V~lie~~~   37 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVE-QGAQVTLIERGT   37 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence            36899999999999999999998 699999999983

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.79  E-value=1.9e-05  Score=67.38  Aligned_cols=33  Identities=27%  Similarity=0.429  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .|+|||+|++|+++|..|++ .|.+|+|+|+.+.
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~-~G~~v~v~Er~~~   35 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRK-HGIKVTIYERNSA   35 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSCS
T ss_pred             EEEEECcCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence            58999999999999999998 7999999998764

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.78  E-value=1.2e-05  Score=66.15  Aligned_cols=34  Identities=24%  Similarity=0.347  Sum_probs=31.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEE-EecC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILL-VEAG   75 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLv-LEaG   75 (197)
                      +.+|++|||+|++|+.+|.+|++ .+.+|+| +|+.
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~-~g~~v~li~e~~   37 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATR-GGLKNVVMFEKG   37 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHH-HTCSCEEEECSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHH-CCCCeEEEEeCC
Confidence            46899999999999999999998 5899999 9983

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.78  E-value=1.4e-05  Score=66.27  Aligned_cols=34  Identities=24%  Similarity=0.341  Sum_probs=31.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      ..+|++|||+|++|+.+|.+|++ .+.+|+|+|+.
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~-~g~~v~lie~~   37 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAAR-ANLQPVLITGM   37 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHT-TTCCCEEECCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH-CCCcEEEEccC
Confidence            46899999999999999999997 69999999964

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.77  E-value=2e-05  Score=70.24  Aligned_cols=36  Identities=25%  Similarity=0.437  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .+||+||||+|++|..+|.+|++ .|.+|+|||+.+.
T Consensus         5 ~~~dVvIIGaG~aGl~aA~~l~~-~G~~V~liE~~~~   40 (482)
T 1ojt_A            5 AEYDVVVLGGGPGGYSAAFAAAD-EGLKVAIVERYKT   40 (482)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCCC
Confidence            36999999999999999999998 7999999999643

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.77  E-value=1.5e-05  Score=66.64  Aligned_cols=33  Identities=30%  Similarity=0.334  Sum_probs=31.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA   74 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa   74 (197)
                      ..+|++|||+|++|+.+|..|++ .+.+|+|||+
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~-~g~~v~lie~   39 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAAR-AELKPLLFEG   39 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCCEEECC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH-CCCeEEEEec
Confidence            46899999999999999999998 6999999998

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.77  E-value=1.8e-05  Score=70.01  Aligned_cols=33  Identities=30%  Similarity=0.555  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      +||+||||+|++|+.+|.+|++ .|.+|+|+|+.
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~-~G~~V~liE~~   35 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQ-LGLSTAIVEPK   35 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHh-CCCeEEEEeCC
Confidence            5899999999999999999998 69999999997

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.76  E-value=2.5e-05  Score=69.95  Aligned_cols=37  Identities=35%  Similarity=0.411  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCC-CeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRS-WNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g-~~VLvLEaG~~~   78 (197)
                      ..+|++|||+|++|+++|.+|++ .| .+|+|+|+....
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~-~g~~~v~v~E~~~~~   45 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTE-LGYKNWHLYECNDTP   45 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHH-TTCCSEEEEESSSSS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHH-cCCCCEEEEeCCCCC
Confidence            47899999999999999999998 56 899999998764

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.76  E-value=1.6e-05  Score=66.88  Aligned_cols=35  Identities=29%  Similarity=0.319  Sum_probs=31.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      ...+|++|||+|++|+.+|.+|++ .+.+|+|+|+.
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~-~g~~v~lie~~   46 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAAR-AQLAPLVFEGT   46 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHH-TTCCCEEECCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHh-CCCeEEEEecC
Confidence            357999999999999999999998 69999999964

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.76  E-value=1.8e-05  Score=70.10  Aligned_cols=35  Identities=26%  Similarity=0.424  Sum_probs=32.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ..||+||||+|+||..+|.+|++ .+.+|+|+|++.
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~-~g~~V~lie~~~   38 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQ-LGIPTVLVEGQA   38 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH-HTCCEEEECSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-CCCEEEEEccCC
Confidence            47999999999999999999998 589999999953

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.75  E-value=1.6e-05  Score=71.16  Aligned_cols=35  Identities=23%  Similarity=0.338  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhh-C-CCeEEEEecCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEV-R-SWNILLVEAGG   76 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~-~-g~~VLvLEaG~   76 (197)
                      .||+||||+|++|+.+|.+|++. + |.+|+|||++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            48999999999999999999983 1 89999999985

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=97.74  E-value=2.7e-05  Score=68.59  Aligned_cols=36  Identities=28%  Similarity=0.393  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCC--eEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSW--NILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~--~VLvLEaG~~   77 (197)
                      ..+|++|||+|++|+++|..|++ .|.  +|+|+|+...
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~-~G~~~~V~v~E~~~~   42 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLA-EKAFDQVTLFERRGS   42 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHT-TTCCSEEEEECSSSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHh-cCCCCCeEEEecCCC
Confidence            46899999999999999999997 688  9999999754

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.74  E-value=2.5e-05  Score=70.97  Aligned_cols=37  Identities=35%  Similarity=0.399  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHhh--CCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEV--RSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~--~g~~VLvLEaG~~   77 (197)
                      ..+|+||||+|++|+++|..|++.  .|.+|+|||+...
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   62 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI   62 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Confidence            478999999999999999999972  5899999999653

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.73  E-value=2.1e-05  Score=69.88  Aligned_cols=37  Identities=35%  Similarity=0.442  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..+|+||||+|.+|+.+|..|++ .|.+|+|||+....
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~-~g~~v~vlE~~~~~   68 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAG-AGHQVTVLEASERP   68 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh-CCCeEEEEECCCCC
Confidence            46899999999999999999998 69999999998654

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.72  E-value=2.6e-05  Score=69.22  Aligned_cols=34  Identities=38%  Similarity=0.640  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +||+||||+|+||..+|.+|++ .+.+|+|+|++.
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~-~g~~V~lie~~~   39 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQ-LGLKVLAVEAGE   39 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence            6999999999999999999998 699999999985

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.72  E-value=2.9e-05  Score=69.48  Aligned_cols=33  Identities=18%  Similarity=0.491  Sum_probs=29.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEe
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVE   73 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLE   73 (197)
                      .+||+||||+|++|..+|.+|++..|++|+|+|
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE   34 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVID   34 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEe
Confidence            369999999999999999999961389999999

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.70  E-value=2.9e-05  Score=68.74  Aligned_cols=37  Identities=35%  Similarity=0.473  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~~   78 (197)
                      +.+|++|||+|.+|+++|.+|++ .+. +|+|+|++...
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~-~g~~~v~~~e~~~~~   40 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSE-AGITDLLILEATDHI   40 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHH-TTCCCEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh-cCCCceEEEeCCCCC
Confidence            46899999999999999999998 688 89999998654

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.70  E-value=2.5e-05  Score=70.39  Aligned_cols=37  Identities=43%  Similarity=0.470  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhh-----------CCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEV-----------RSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~-----------~g~~VLvLEaG~~   77 (197)
                      ..+|+||||+|++|+++|..|++.           .|.+|+|||+...
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~   53 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDV   53 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCC
Confidence            368999999999999999999971           6899999998643

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.68  E-value=3.4e-05  Score=68.53  Aligned_cols=34  Identities=32%  Similarity=0.235  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +|+||||+|.+|+.+|..|++ .|.+|+|+|+.+.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~-~G~~V~liE~~~~   35 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLR-LGVPVRLFEMRPK   35 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH-TTCCEEEECCTTT
T ss_pred             CCEEEECchHHHHHHHHHHHH-CCCcEEEEeccCC
Confidence            699999999999999999998 7999999998774

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.66  E-value=3.5e-05  Score=70.34  Aligned_cols=37  Identities=27%  Similarity=0.484  Sum_probs=33.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ...+|+||||+|++|+.+|.+|++ .|.+|+|||+++.
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~-~G~~v~iiE~~~~   55 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRS-QGLTVRAFEAASG   55 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCCCEEEECchHHHHHHHHHHHh-CCCCEEEEeCCCC
Confidence            357999999999999999999998 7999999999754

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.66  E-value=3.8e-05  Score=70.05  Aligned_cols=36  Identities=31%  Similarity=0.517  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ..+|+||||+|++|+.+|.+|.+ .+.+|+|||+++.
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~-~g~~v~iiE~~~~   43 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQ-AGMKVLGIEAGED   43 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHh-CCCCEEEEeCCCC
Confidence            47999999999999999999997 7999999999864

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.66  E-value=3.3e-05  Score=70.35  Aligned_cols=36  Identities=19%  Similarity=0.344  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHH-hhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLA-EVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~La-e~~g~~VLvLEaG~~   77 (197)
                      ..+|+||||+|++|+.+|.+|+ + .|.+|+|||+.+.
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~-~G~~v~viE~~~~   43 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHE-LGLTTVGFDKADG   43 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCCEEEEESSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHc-CCCCEEEEECCCC
Confidence            4799999999999999999999 6 7999999999764

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.63  E-value=3.8e-05  Score=70.21  Aligned_cols=35  Identities=17%  Similarity=0.371  Sum_probs=32.0

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      ...||++|||+|+||..+|.+|++ .|.+|+|+|+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~-~g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAK-YGAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHH-TTCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHh-CCCeEEEEecc
Confidence            357999999999999999999998 69999999974

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.63  E-value=4.9e-05  Score=70.96  Aligned_cols=39  Identities=33%  Similarity=0.528  Sum_probs=34.6

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ....+|++|||+|++|+.+|..|++ .|++|+|+|++...
T Consensus       388 ~~~~~~VvIIGgG~AGl~aA~~La~-~G~~V~liE~~~~~  426 (690)
T 3k30_A          388 KESDARVLVVGAGPSGLEAARALGV-RGYDVVLAEAGRDL  426 (690)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             ccccceEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence            3457999999999999999999998 59999999998643

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=97.62  E-value=3.9e-05  Score=70.18  Aligned_cols=37  Identities=27%  Similarity=0.433  Sum_probs=33.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..+|+||||+|++|+.+|..|++ .|.+|+|||+.+..
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~-~g~~v~~~e~~~~~  161 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARD-AGAKVILLEKEPIP  161 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHS-SSCCEEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence            47899999999999999999997 79999999998754

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.59  E-value=4.6e-05  Score=71.07  Aligned_cols=36  Identities=31%  Similarity=0.477  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhh----CCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEV----RSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~----~g~~VLvLEaG~~   77 (197)
                      ++|++|||+|++|+++|..|++.    .|.+|+|||+.+.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~   47 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   47 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence            79999999999999999999962    5999999999754

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.56  E-value=5.3e-05  Score=66.79  Aligned_cols=35  Identities=17%  Similarity=0.275  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~   77 (197)
                      +|+||||+|++|..+|.+|++. ++.+|+|||+...
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~   36 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDN   36 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            5899999999999999999973 3899999999875

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.55  E-value=5.8e-05  Score=67.70  Aligned_cols=33  Identities=24%  Similarity=0.489  Sum_probs=29.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEe
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVE   73 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLE   73 (197)
                      ..||+||||+|++|..+|.+|++..|++|+|+|
T Consensus         6 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE   38 (495)
T 2wpf_A            6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVD   38 (495)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             cccCEEEECCChhHHHHHHHHHHhcCCeEEEEe
Confidence            379999999999999999999961389999999

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.54  E-value=6.2e-05  Score=67.97  Aligned_cols=34  Identities=29%  Similarity=0.435  Sum_probs=31.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA   74 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa   74 (197)
                      ...||++|||+|+||+.+|.+|++ .|.+|+|+|.
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~-~G~~v~lie~  243 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSAR-KGIRTGLMGE  243 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHH-TTCCEEEECS
T ss_pred             cCcccEEEECCcHHHHHHHHHHHh-CCCeEEEEEC
Confidence            357999999999999999999998 6999999986

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.52  E-value=5.6e-05  Score=71.87  Aligned_cols=38  Identities=29%  Similarity=0.348  Sum_probs=33.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ...+|+||||+|.+|+++|..|++ .|.+|+|||++...
T Consensus       334 ~~~~~v~viG~G~~Gl~aA~~l~~-~g~~v~v~E~~~~~  371 (776)
T 4gut_A          334 YHNKSVIIIGAGPAGLAAARQLHN-FGIKVTVLEAKDRI  371 (776)
T ss_dssp             GTSCEEEEECCSHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHH-CCCcEEEEecccce
Confidence            346899999999999999999998 69999999997654

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.50  E-value=0.0001  Score=65.70  Aligned_cols=37  Identities=19%  Similarity=0.311  Sum_probs=33.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..+|++|||+|+||+.+|..|++ .|.+|+|+|+....
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~-~G~~V~v~e~~~~~  157 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRA-KGYEVHVYDRYDRM  157 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHH-HTCCEEEECSSSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCCC
Confidence            46899999999999999999998 59999999998653

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.48  E-value=0.0001  Score=64.10  Aligned_cols=37  Identities=27%  Similarity=0.488  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCe--EEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWN--ILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~--VLvLEaG~~~   78 (197)
                      +.+|+||||+|++|+.+|.+|++ .+.+  |+|+|+.+..
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~-~g~~~~V~lie~~~~~   46 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQ-NGFEGRVLVIGREPEI   46 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH-TTCCSCEEEEESSSSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHc-cCcCCCEEEEecCCCC
Confidence            57999999999999999999998 5665  9999998753

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.47  E-value=0.0001  Score=65.69  Aligned_cols=37  Identities=22%  Similarity=0.400  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~   78 (197)
                      .+|+||||+|++|+.+|.+|++. ++.+|+|||+....
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   73 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIY   73 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCC
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            47999999999999999999973 48999999998653

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.43  E-value=0.00012  Score=63.02  Aligned_cols=34  Identities=26%  Similarity=0.413  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCC--CeEEEEecCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRS--WNILLVEAGG   76 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g--~~VLvLEaG~   76 (197)
                      .+|+||||+|++|..+|.+|++ .+  .+|+|+|+..
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~-~g~~~~V~lie~~~   39 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRK-LDGETPLLMITADD   39 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHT-TCSSSCEEEECSSC
T ss_pred             CCcEEEECChHHHHHHHHHHHh-hCCCCCEEEEECCC
Confidence            5899999999999999999997 46  5799999864

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.42  E-value=0.00012  Score=65.66  Aligned_cols=40  Identities=23%  Similarity=0.367  Sum_probs=34.2

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHh-hCCCeEEEEecCCCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAE-VRSWNILLVEAGGDP   78 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~~~   78 (197)
                      .+..+|+||||+|+||+.+|..|.+ ..+.+|+|||+.+..
T Consensus         8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~   48 (493)
T 1m6i_A            8 APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   48 (493)
T ss_dssp             CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            3468999999999999999999976 348999999998653

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.41  E-value=0.00014  Score=63.88  Aligned_cols=35  Identities=37%  Similarity=0.511  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCC--eEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSW--NILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~--~VLvLEaG~~   77 (197)
                      .+|+||||+|++|+.+|.+|++ .+.  +|+|+|+.+.
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~-~g~~~~V~lie~~~~   40 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRA-SGWEGNIRLVGDATV   40 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHH-TTCCSEEEEECSCCS
T ss_pred             CCcEEEEcCHHHHHHHHHHHHc-cCcCCCEEEEECCCC
Confidence            5899999999999999999998 576  8999998764

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.41  E-value=0.00011  Score=64.92  Aligned_cols=36  Identities=22%  Similarity=0.256  Sum_probs=32.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~   78 (197)
                      .|+||||+|++|+.+|.+|++. ++.+|+|+|+++..
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   39 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATV   39 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            5899999999999999999972 48999999999764

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.40  E-value=0.00016  Score=67.17  Aligned_cols=38  Identities=26%  Similarity=0.369  Sum_probs=34.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ...+|++|||+|++|+.+|..|++ .|.+|+|+|+....
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~-~g~~v~~~e~~~~~  142 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQS-FGMDVTLLEARDRV  142 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence            356899999999999999999998 79999999998654

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.39  E-value=8.9e-05  Score=66.20  Aligned_cols=36  Identities=17%  Similarity=0.321  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhh--CCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEV--RSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~--~g~~VLvLEaG~~   77 (197)
                      .+|+||||+|++|..+|.+|++.  ++.+|+|||+...
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~   72 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSN   72 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCC
Confidence            59999999999999999999983  2399999999864

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.39  E-value=0.00012  Score=64.38  Aligned_cols=35  Identities=20%  Similarity=0.281  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~   77 (197)
                      .|+||||+|++|..+|.+|++. ++.+|+|||+...
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~   36 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDF   36 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCc
Confidence            3899999999999999999973 4899999999875

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.39  E-value=8.1e-05  Score=66.72  Aligned_cols=35  Identities=31%  Similarity=0.378  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .+|++|||+|++|+.+|.+|++ . .+|+|||+++..
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~-~-~~V~vie~~~~~  142 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQ-Y-LTVALIEERGWL  142 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTT-T-CCEEEECTTSSS
T ss_pred             cCCEEEECccHHHHHHHHHHHh-c-CCEEEEeCCCCC
Confidence            5899999999999999999998 5 999999998754

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.38  E-value=0.00021  Score=67.19  Aligned_cols=38  Identities=29%  Similarity=0.416  Sum_probs=34.0

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ...+|++|||+|+||+.+|..|++ .|++|+|+|+....
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~-~G~~Vtlie~~~~~  424 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLME-SGYTVHLTDTAEKI  424 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSST
T ss_pred             cCCceEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCCc
Confidence            346899999999999999999998 69999999998653

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.37  E-value=0.00013  Score=62.98  Aligned_cols=34  Identities=24%  Similarity=0.388  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -.|++|||+|+||..+|.+|++ .+ +|+|+|++..
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~-~g-~V~lie~~~~   41 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQ-TY-EVTVIDKEPV   41 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTT-TS-EEEEECSSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHhh-cC-CEEEEECCCC
Confidence            4699999999999999999987 57 9999999875

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.36  E-value=0.00031  Score=65.28  Aligned_cols=38  Identities=32%  Similarity=0.437  Sum_probs=33.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ...+|++|||+|+||..+|..|++ .+.+|+|+|+.+..
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~-~g~~V~lie~~~~~  408 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAA-RGHQVTLFDAHSEI  408 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHT-TTCEEEEEESSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCCCC
Confidence            346899999999999999999997 69999999998653

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.36  E-value=0.00014  Score=63.98  Aligned_cols=37  Identities=30%  Similarity=0.471  Sum_probs=32.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~   78 (197)
                      .+|+||||+|++|+.+|.+|++. ++.+|+|+|+.+..
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~   40 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWV   40 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCcc
Confidence            47999999999999999999973 47899999999754

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.33  E-value=0.00012  Score=64.80  Aligned_cols=37  Identities=14%  Similarity=0.259  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~   78 (197)
                      ..|++|||+|++|+.+|.+|++. ++.+|+|+|+.+..
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~   40 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRI   40 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcc
Confidence            36899999999999999999972 48999999998763

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.32  E-value=0.00017  Score=64.07  Aligned_cols=35  Identities=20%  Similarity=0.308  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHh--hCCCe---EEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAE--VRSWN---ILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae--~~g~~---VLvLEaG~~   77 (197)
                      +|++|||+|++|+.+|..|++  ..|.+   |+|+|+...
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~   42 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQAD   42 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSS
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCC
Confidence            699999999999999999996  14888   999999864

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.31  E-value=0.00018  Score=62.67  Aligned_cols=37  Identities=19%  Similarity=0.334  Sum_probs=32.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCC--eEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSW--NILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~--~VLvLEaG~~~   78 (197)
                      ..+|+||||+|++|+.+|.+|++ .+.  +|+|+|+.+..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~-~g~~~~V~lie~~~~~   44 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQ-AGYQGLITVVGDEAER   44 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHH-HTCCSCEEEEESSCSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHc-cCCCCeEEEEECCCCC
Confidence            46899999999999999999998 455  69999998653

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.30  E-value=0.00017  Score=69.95  Aligned_cols=36  Identities=25%  Similarity=0.460  Sum_probs=33.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .+|+||||+|+||..+|.+|++ .+.+|+|+|+.+..
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~-~G~~V~lie~~~~~  163 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASR-SGARVMLLDERAEA  163 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHh-CCCcEEEEeCCCCC
Confidence            6899999999999999999998 79999999998654

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.26  E-value=0.00023  Score=61.59  Aligned_cols=34  Identities=9%  Similarity=0.101  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHh--hCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAE--VRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae--~~g~~VLvLEaG~~   77 (197)
                      |+||||+|++|+.+|.+|++  .++.+|+|||+...
T Consensus         3 ~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~   38 (409)
T 3h8l_A            3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRF   38 (409)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence            79999999999999999996  15899999999875

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.22  E-value=0.00024  Score=64.63  Aligned_cols=38  Identities=26%  Similarity=0.407  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~   78 (197)
                      ...|++|||+|++|+.+|.+|++. ++.+|+|+|+.+..
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   73 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYI   73 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            367999999999999999999972 38999999999764

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.20  E-value=0.00031  Score=60.92  Aligned_cols=35  Identities=29%  Similarity=0.390  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCC--eEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSW--NILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~--~VLvLEaG~~~   78 (197)
                      .|+||||+|++|+.+|.+|++ .+.  +|+|+|+.+..
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~-~g~~~~V~lie~~~~~   38 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQ-AKYPGRIALINDEKHL   38 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH-TTCCSCEEEECCSSSS
T ss_pred             CCEEEEcChHHHHHHHHHHHh-hCcCCCEEEEeCCCCC
Confidence            479999999999999999998 576  89999998753

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.16  E-value=0.00043  Score=66.50  Aligned_cols=38  Identities=26%  Similarity=0.369  Sum_probs=34.0

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ...+|++|||+|++|+.+|..|++ .|.+|+|+|+....
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~-~g~~v~v~E~~~~~  313 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQS-FGMDVTLLEARDRV  313 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHH-CCCcEEEEEecCcC
Confidence            346899999999999999999998 79999999998654

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.05  E-value=0.00043  Score=61.62  Aligned_cols=36  Identities=25%  Similarity=0.260  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCC--CeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRS--WNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g--~~VLvLEaG~~~   78 (197)
                      .+|++|||+|++|..+|.+|++. +  .+|+|+|+.+..
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~-g~~~~V~vie~~~~~   43 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKH-HSRAHVDIYEKQLVP   43 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH-CSSCEEEEECSSSSS
T ss_pred             CceEEEECcCHHHHHHHHHHHhc-CCCCCEEEEeCCCcC
Confidence            57999999999999999999983 5  999999998653

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.04  E-value=0.00042  Score=62.49  Aligned_cols=36  Identities=22%  Similarity=0.366  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~   78 (197)
                      .|++|||+|++|+.+|.+|++. ++.+|+|+|+.+..
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~   38 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYV   38 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            3799999999999999999973 37899999999764

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.02  E-value=0.00057  Score=66.68  Aligned_cols=36  Identities=28%  Similarity=0.296  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~   77 (197)
                      ..+|++|||+|+||+.+|.+|++ .|. +|+|+|+...
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~-~G~~~Vtv~E~~~~  222 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLAR-LGYSDITIFEKQEY  222 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHH-TTCCCEEEEESSSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHh-cCCCcEEEEeCCCC
Confidence            36899999999999999999998 688 7999999754

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.01  E-value=0.00043  Score=60.72  Aligned_cols=36  Identities=28%  Similarity=0.375  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHh--hCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAE--VRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae--~~g~~VLvLEaG~~   77 (197)
                      ..|+||||+|++|+.+|.+|++  .++.+|.|||+.+.
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~   41 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDY   41 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCC
Confidence            3689999999999999999997  25899999999875

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.00  E-value=0.00067  Score=58.35  Aligned_cols=34  Identities=26%  Similarity=0.423  Sum_probs=29.2

Q ss_pred             cEEEECCChHHHHHHHHHHh-hCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAE-VRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~~   77 (197)
                      .+||||+|+||..+|.+|.+ .++.+|.|||+...
T Consensus         4 kVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET   38 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence            38999999999999999986 34579999998764

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=96.98  E-value=0.0005  Score=61.15  Aligned_cols=36  Identities=19%  Similarity=0.274  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHHh-h-C----CCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAE-V-R----SWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae-~-~----g~~VLvLEaG~~   77 (197)
                      .+|++|||+|+||+.+|..|++ . +    +.+|.|+|+.+.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~   44 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   44 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCC
Confidence            5899999999999999999986 3 2    799999999864

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=96.93  E-value=0.00081  Score=58.53  Aligned_cols=35  Identities=23%  Similarity=0.327  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCe--EEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWN--ILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~--VLvLEaG~~~   78 (197)
                      .|++|||+|++|+.+|.+|.+ .+.+  |+|+|+.+..
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~-~g~~~~V~li~~~~~~   39 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRA-EGFEGRISLIGDEPHL   39 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCCSEEEEEECSSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHc-cCcCCeEEEEECCCCC
Confidence            389999999999999999998 5655  9999998753

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.83  E-value=0.00094  Score=58.82  Aligned_cols=35  Identities=26%  Similarity=0.478  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~   78 (197)
                      .+||||+|+||..+|.+|++. .+.+|+|+|+++..
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~   37 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   37 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            489999999999999999873 34689999998653

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=96.67  E-value=0.00086  Score=63.29  Aligned_cols=35  Identities=23%  Similarity=0.374  Sum_probs=31.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCC--------CeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRS--------WNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g--------~~VLvLEaG~   76 (197)
                      ...+++|||+|.+|+++|.+|++ .+        .+|.|+|+..
T Consensus        55 ~~~~v~IiGaGiaGL~aA~~L~~-~g~~~~~~~~~~V~v~E~~~   97 (721)
T 3ayj_A           55 GNYRIAIVGGGAGGIAALYELGR-LAATLPAGSGIDVQIYEADP   97 (721)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHH-HHTTSCTTCEEEEEEECCCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH-cCcccccCCCceEEEEeccC
Confidence            35899999999999999999997 46        8999999987

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.65  E-value=0.00041  Score=62.32  Aligned_cols=38  Identities=24%  Similarity=0.292  Sum_probs=30.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhh-------------CCCeEEEEecCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEV-------------RSWNILLVEAGGD   77 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~-------------~g~~VLvLEaG~~   77 (197)
                      .+.||+||||+|++|+.+|..|.+.             .+..++.+|+-+.
T Consensus        37 ~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~   87 (501)
T 4b63_A           37 DELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQ   87 (501)
T ss_dssp             TSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSS
T ss_pred             CCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCC
Confidence            3569999999999999999999762             2346788888664

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.62  E-value=0.0019  Score=56.07  Aligned_cols=37  Identities=22%  Similarity=0.255  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +...++|||+|+||..+|.+|. ..+.+|+|+|+.+..
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~-~~~~~itlie~~~~~   44 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAAL-GKCDDITMINSEKYL   44 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHT-TTCSCEEEECSSSSC
T ss_pred             CCCCEEEEcCcHHHHHHHHHHh-CCCCEEEEEECCCCC
Confidence            5678999999999999999995 478999999998764

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=96.60  E-value=0.002  Score=56.46  Aligned_cols=34  Identities=21%  Similarity=0.368  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHh-hCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAE-VRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~~   77 (197)
                      .+||||+|+||..+|.+|.+ .++.+|.|||+.+.
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~   38 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPY   38 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSE
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCC
Confidence            48999999999999999987 34689999998764

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=96.43  E-value=0.0022  Score=57.68  Aligned_cols=36  Identities=11%  Similarity=0.335  Sum_probs=31.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +...+||||+|.||..+|.+|.+ .+.+|.|||+.+.
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~-~~~~VtLId~~~~   76 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDT-KKYNVSIISPRSY   76 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCT-TTCEEEEEESSSE
T ss_pred             CCCCEEEECCcHHHHHHHHHhhh-CCCcEEEECCCCC
Confidence            35579999999999999999986 6899999998754

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=95.15  E-value=0.022  Score=49.77  Aligned_cols=37  Identities=16%  Similarity=0.336  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ...+++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~-~g~~Vtlv~~~~~~  184 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAK-AGKKVTVIDILDRP  184 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSST
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH-CCCeEEEEecCccc
Confidence            34689999999999999999997 79999999998753

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.99  E-value=0.03  Score=41.19  Aligned_cols=33  Identities=24%  Similarity=0.511  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||.|..|..+|.+|.+ .|.+|.++|..+.
T Consensus         9 ~viIiG~G~~G~~la~~L~~-~g~~v~vid~~~~   41 (140)
T 3fwz_A            9 HALLVGYGRVGSLLGEKLLA-SDIPLVVIETSRT   41 (140)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-TTCCEEEEESCHH
T ss_pred             CEEEECcCHHHHHHHHHHHH-CCCCEEEEECCHH
Confidence            69999999999999999997 6999999998754

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.75  E-value=0.038  Score=40.27  Aligned_cols=32  Identities=25%  Similarity=0.479  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .++|+|+|..|..+|..|.+ .|.+|.++|..+
T Consensus         8 ~v~I~G~G~iG~~la~~L~~-~g~~V~~id~~~   39 (141)
T 3llv_A            8 EYIVIGSEAAGVGLVRELTA-AGKKVLAVDKSK   39 (141)
T ss_dssp             SEEEECCSHHHHHHHHHHHH-TTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHH-CCCeEEEEECCH
Confidence            59999999999999999997 699999999854

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.74  E-value=0.042  Score=39.40  Aligned_cols=32  Identities=34%  Similarity=0.584  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .++|||+|..|..+|..|.+ .+.+|.++++.+
T Consensus         6 ~i~IiG~G~iG~~~a~~L~~-~g~~v~~~d~~~   37 (140)
T 1lss_A            6 YIIIAGIGRVGYTLAKSLSE-KGHDIVLIDIDK   37 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence            58999999999999999997 689999998753

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=94.49  E-value=0.049  Score=40.58  Aligned_cols=35  Identities=20%  Similarity=0.379  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .-.++|+|+|..|..+|..|.+ .|.+|.++++.+.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~-~g~~V~vid~~~~   53 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASS-SGHSVVVVDKNEY   53 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCGG
T ss_pred             CCcEEEECCCHHHHHHHHHHHh-CCCeEEEEECCHH
Confidence            3469999999999999999997 6899999987643

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.42  E-value=0.049  Score=40.45  Aligned_cols=31  Identities=19%  Similarity=0.280  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      .++|+|+|..|..+|..|.+ .+.+|.++|..
T Consensus         5 ~vlI~G~G~vG~~la~~L~~-~g~~V~vid~~   35 (153)
T 1id1_A            5 HFIVCGHSILAINTILQLNQ-RGQNVTVISNL   35 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-TTCCEEEEECC
T ss_pred             cEEEECCCHHHHHHHHHHHH-CCCCEEEEECC
Confidence            58999999999999999997 69999999985

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=94.26  E-value=0.046  Score=44.90  Aligned_cols=34  Identities=12%  Similarity=0.228  Sum_probs=31.1

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus       147 ~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          147 RLFVIGGGDSAVEEGTFLTK-FADKVTIVHRRDEL  180 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TCSEEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHHh-cCCEEEEEeccccc
Confidence            68999999999999999997 79999999998764

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=94.12  E-value=0.042  Score=47.42  Aligned_cols=34  Identities=21%  Similarity=0.193  Sum_probs=31.2

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|+|+.+..
T Consensus       148 ~vvVIGgG~~g~E~A~~l~~-~g~~Vtvv~~~~~~  181 (385)
T 3klj_A          148 KAFIIGGGILGIELAQAIID-SGTPASIGIILEYP  181 (385)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-HTCCEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHh-CCCeEEEEEcCCcc
Confidence            69999999999999999998 58999999998764

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.07  E-value=0.057  Score=47.22  Aligned_cols=35  Identities=20%  Similarity=0.406  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~  205 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYAN-FGTKVTILEGAGEI  205 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCcEEEEEcCCcc
Confidence            479999999999999999997 69999999998653

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=94.04  E-value=0.055  Score=47.32  Aligned_cols=35  Identities=20%  Similarity=0.231  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~-~g~~V~lv~~~~~~  202 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHR-LGAEVIVLEYMDRI  202 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCEEEEEecCCcc
Confidence            368999999999999999997 69999999998753

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=94.01  E-value=0.056  Score=47.58  Aligned_cols=35  Identities=17%  Similarity=0.258  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~  204 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRR-LGAEVTLIEYMPEI  204 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHH-CCCeEEEEEcCCcc
Confidence            369999999999999999997 69999999998753

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=93.91  E-value=0.067  Score=45.65  Aligned_cols=35  Identities=20%  Similarity=0.350  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -+++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       146 ~~v~ViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~  180 (384)
T 2v3a_A          146 RRVLLLGAGLIGCEFANDLSS-GGYQLDVVAPCEQV  180 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCCeEEEEecCcch
Confidence            468999999999999999997 69999999998753

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=93.87  E-value=0.048  Score=47.92  Aligned_cols=34  Identities=24%  Similarity=0.299  Sum_probs=31.1

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus       173 ~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~  206 (458)
T 1lvl_A          173 HLVVVGGGYIGLELGIAYRK-LGAQVSVVEARERI  206 (458)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             eEEEECcCHHHHHHHHHHHH-CCCeEEEEEcCCcc
Confidence            69999999999999999997 59999999998764

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=93.76  E-value=0.059  Score=46.05  Aligned_cols=35  Identities=34%  Similarity=0.469  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  178 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAE-AGYHVKLIHRGAMF  178 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHH-TTCEEEEECSSSCC
T ss_pred             CcEEEECCCHHHHHHHHHHHh-CCCEEEEEeCCCee
Confidence            368999999999999999997 69999999998753

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=93.41  E-value=0.083  Score=46.43  Aligned_cols=35  Identities=20%  Similarity=0.227  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~  218 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSR-LGSKVTVVEFQPQI  218 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHH-cCCEEEEEEeCCcc
Confidence            368999999999999999997 79999999998754

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=93.35  E-value=0.084  Score=43.01  Aligned_cols=35  Identities=17%  Similarity=0.217  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.|+|+....
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~-~G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTK-YGSKVIILHRRDAF  187 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTT-TSSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHH-hCCeeeeecccccc
Confidence            369999999999999999997 79999999987653

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=93.19  E-value=0.094  Score=45.91  Aligned_cols=33  Identities=24%  Similarity=0.208  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|+|+++.
T Consensus       169 ~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~  201 (450)
T 1ges_A          169 RVAVVGAGYIGVELGGVING-LGAKTHLFEMFDA  201 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHh-cCCEEEEEEeCCc
Confidence            69999999999999999997 6999999999865

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.14  E-value=0.085  Score=40.19  Aligned_cols=34  Identities=24%  Similarity=0.264  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhhC-CCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVR-SWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~-g~~VLvLEaG~~   77 (197)
                      -.++|||.|..|..+|.+|.+ . |.+|.++|..+.
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~-~~g~~V~vid~~~~   74 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRA-RYGKISLGIEIREE   74 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH-HHCSCEEEEESCHH
T ss_pred             CcEEEECCCHHHHHHHHHHHh-ccCCeEEEEECCHH
Confidence            369999999999999999997 6 899999998643

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=93.06  E-value=0.099  Score=37.48  Aligned_cols=32  Identities=22%  Similarity=0.466  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .++|+|+|..|..+|..|.+ .+.+|.++++..
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~-~g~~v~~~d~~~   39 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHR-MGHEVLAVDINE   39 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHH-TTCCCEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence            48999999999999999997 688999998753

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=93.00  E-value=0.11  Score=44.80  Aligned_cols=35  Identities=29%  Similarity=0.335  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  180 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATART-AGVHVSLVETQPRL  180 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCCEEEEEEeCCcc
Confidence            479999999999999999997 69999999998753

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=92.97  E-value=0.1  Score=43.45  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++.
T Consensus       168 ~vvVvG~G~~g~e~a~~l~~-~g~~V~lv~~~~~  200 (369)
T 3d1c_A          168 QYVVIGGNESGFDAAYQLAK-NGSDIALYTSTTG  200 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECC---
T ss_pred             EEEEECCCcCHHHHHHHHHh-cCCeEEEEecCCC
Confidence            69999999999999999997 6899999999865

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=92.86  E-value=0.14  Score=35.46  Aligned_cols=32  Identities=25%  Similarity=0.508  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCC-CeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRS-WNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g-~~VLvLEaG~   76 (197)
                      .++|+|+|..|..++..|.+ .| .+|.++++.+
T Consensus         7 ~v~I~G~G~iG~~~~~~l~~-~g~~~v~~~~r~~   39 (118)
T 3ic5_A            7 NICVVGAGKIGQMIAALLKT-SSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-CSSEEEEEEESCH
T ss_pred             eEEEECCCHHHHHHHHHHHh-CCCceEEEEeCCH
Confidence            58999999999999999997 57 8999998754

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=92.80  E-value=0.097  Score=41.16  Aligned_cols=33  Identities=21%  Similarity=0.498  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|..|..+|.+|.+ .+.+|.++|.-+.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~-~g~~v~vid~~~~   34 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLS-RKYGVVIINKDRE   34 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHH-TTCCEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCeEEEEECCHH
Confidence            38999999999999999997 6999999997543

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=92.65  E-value=0.079  Score=46.81  Aligned_cols=35  Identities=23%  Similarity=0.362  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .-+++|||+|..|+-+|..|++ .+.+|.++|+++.
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~  220 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVE-LGKKVRMIERNDH  220 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHH-TTCEEEEECCGGG
T ss_pred             CCeEEEECCCHHHHHHHHHHHh-cCCeEEEEEeCCc
Confidence            3479999999999999999997 6999999999865

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=92.61  E-value=0.14  Score=45.33  Aligned_cols=35  Identities=23%  Similarity=0.337  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~~  229 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQR-KGKEVVLIDVVDTC  229 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSST
T ss_pred             ceEEEECCCHHHHHHHHHHHH-CCCeEEEEEcccch
Confidence            358999999999999999997 69999999998753

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=92.37  E-value=0.15  Score=42.60  Aligned_cols=32  Identities=22%  Similarity=0.485  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+.|||+|.-|+.+|.+|++ .|.+|.++.+..
T Consensus         4 kI~IiGaGaiG~~~a~~L~~-~g~~V~~~~r~~   35 (320)
T 3i83_A            4 NILVIGTGAIGSFYGALLAK-TGHCVSVVSRSD   35 (320)
T ss_dssp             EEEEESCCHHHHHHHHHHHH-TTCEEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCh
Confidence            48899999999999999998 689999998865

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=92.27  E-value=0.15  Score=44.74  Aligned_cols=33  Identities=27%  Similarity=0.293  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++.
T Consensus       168 ~vvVvGgG~~g~e~A~~l~~-~G~~Vtlv~~~~~  200 (463)
T 2r9z_A          168 RVAIIGAGYIGIELAGLLRS-FGSEVTVVALEDR  200 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHh-cCCEEEEEEcCCc
Confidence            68999999999999999997 6999999999865

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=92.19  E-value=0.16  Score=44.55  Aligned_cols=34  Identities=26%  Similarity=0.356  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       180 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  213 (474)
T 1zmd_A          180 KMVVIGAGVIGVELGSVWQR-LGADVTAVEFLGHV  213 (474)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCEEEEEeccCcc
Confidence            69999999999999999997 69999999998753

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=92.10  E-value=0.18  Score=41.07  Aligned_cols=35  Identities=17%  Similarity=0.177  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.++++++..
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~-~g~~Vtlv~~~~~~  178 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLAN-ICKKVYLIHRRDGF  178 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHT-TSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHh-cCCEEEEEeeCCcc
Confidence            468999999999999999997 68999999998653

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=92.09  E-value=0.16  Score=41.36  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++++.+..
T Consensus       146 ~v~VvG~G~~g~e~A~~l~~-~g~~Vtlv~~~~~~  179 (310)
T 1fl2_A          146 RVAVIGGGNSGVEAAIDLAG-IVEHVTLLEFAPEM  179 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHT-TBSEEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHHH-hCCEEEEEEeCccc
Confidence            68999999999999999997 68999999988653

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=92.01  E-value=0.17  Score=44.20  Aligned_cols=34  Identities=26%  Similarity=0.316  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus       173 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  206 (464)
T 2a8x_A          173 SIIIAGAGAIGMEFGYVLKN-YGVDVTIVEFLPRA  206 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             eEEEECCcHHHHHHHHHHHH-cCCeEEEEEcCCcc
Confidence            68999999999999999997 69999999998753

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=91.93  E-value=0.18  Score=43.85  Aligned_cols=34  Identities=24%  Similarity=0.451  Sum_probs=31.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       150 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  183 (449)
T 3kd9_A          150 NVVIIGGGYIGIEMAEAFAA-QGKNVTMIVRGERV  183 (449)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSST
T ss_pred             eEEEECCCHHHHHHHHHHHh-CCCeEEEEEcCCcc
Confidence            79999999999999999997 69999999998754

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=91.86  E-value=0.16  Score=44.30  Aligned_cols=34  Identities=21%  Similarity=0.295  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCe-EEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWN-ILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~-VLvLEaG~~   77 (197)
                      -.++|||+|..|+-+|..|++ .+.+ |.++++++.
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~-~~~~~V~l~~r~~~  247 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTP-VAKHPIYQSLLGGG  247 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTT-TSCSSEEEECTTCC
T ss_pred             CEEEEEccCcCHHHHHHHHHH-HhCCcEEEEeCCCC
Confidence            369999999999999999997 5777 999998763

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=91.84  E-value=0.16  Score=42.42  Aligned_cols=32  Identities=22%  Similarity=0.298  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+.|||+|.-|+.+|..|++ .|.+|.++.+..
T Consensus         4 kI~IiGaGaiG~~~a~~L~~-~g~~V~~~~r~~   35 (312)
T 3hn2_A            4 RIAIVGAGALGLYYGALLQR-SGEDVHFLLRRD   35 (312)
T ss_dssp             CEEEECCSTTHHHHHHHHHH-TSCCEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHH-CCCeEEEEEcCc
Confidence            48999999999999999998 689999998865

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=91.70  E-value=0.2  Score=43.59  Aligned_cols=35  Identities=14%  Similarity=0.338  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.++|+.+..
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~-~G~~Vtlv~~~~~~  184 (431)
T 1q1r_A          150 NRLVVIGGGYIGLEVAATAIK-ANMHVTLLDTAARV  184 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCCEEEEEEeCCcc
Confidence            368999999999999999997 69999999998653

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=91.68  E-value=0.2  Score=44.39  Aligned_cols=34  Identities=18%  Similarity=0.267  Sum_probs=31.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       176 ~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~~  209 (492)
T 3ic9_A          176 SVAVFGPGVIGLELGQALSR-LGVIVKVFGRSGSV  209 (492)
T ss_dssp             EEEEESSCHHHHHHHHHHHH-TTCEEEEECCTTCC
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEEECCcc
Confidence            69999999999999999997 69999999998764

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=91.59  E-value=0.24  Score=40.03  Aligned_cols=32  Identities=13%  Similarity=0.229  Sum_probs=28.9

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +.|||+|.-|+.+|..|++ .|.+|.++++...
T Consensus         3 i~iiG~G~~G~~~a~~l~~-~g~~V~~~~r~~~   34 (291)
T 1ks9_A            3 ITVLGCGALGQLWLTALCK-QGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEECCSHHHHHHHHHHHH-TTCEEEEECSSCC
T ss_pred             EEEECcCHHHHHHHHHHHh-CCCCEEEEEcCcc
Confidence            7899999999999999997 7899999988754

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=91.58  E-value=0.21  Score=44.06  Aligned_cols=33  Identities=30%  Similarity=0.341  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++.
T Consensus       187 ~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~  219 (479)
T 2hqm_A          187 KVVVVGAGYIGIELAGVFHG-LGSETHLVIRGET  219 (479)
T ss_dssp             EEEEECSSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCceEEEEeCCc
Confidence            68999999999999999997 6999999999875

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=91.55  E-value=0.21  Score=43.12  Aligned_cols=35  Identities=26%  Similarity=0.459  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.++|+.+..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~-~g~~Vtvv~~~~~~  178 (410)
T 3ef6_A          144 TRLLIVGGGLIGCEVATTARK-LGLSVTILEAGDEL  178 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCCeEEEEecCCcc
Confidence            369999999999999999997 79999999998763

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=91.51  E-value=0.16  Score=44.74  Aligned_cols=35  Identities=17%  Similarity=0.208  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~-~G~~Vtlv~~~~~~  220 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYST-LGSRLDVVEMMDGL  220 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCeEEEEEECCcc
Confidence            369999999999999999997 68999999998753

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=91.41  E-value=0.14  Score=44.76  Aligned_cols=35  Identities=20%  Similarity=0.304  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtli~~~~~~  212 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGR-IGSEVTVVEFASEI  212 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCcEEEEEcCCcc
Confidence            368999999999999999997 58999999998753

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=91.38  E-value=0.21  Score=44.36  Aligned_cols=33  Identities=18%  Similarity=0.239  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++.
T Consensus       178 ~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~  210 (500)
T 1onf_A          178 KIGIVGSGYIAVELINVIKR-LGIDSYIFARGNR  210 (500)
T ss_dssp             EEEEECCSHHHHHHHHHHHT-TTCEEEEECSSSS
T ss_pred             eEEEECChHHHHHHHHHHHH-cCCeEEEEecCCc
Confidence            58999999999999999997 6999999999875

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=91.23  E-value=0.2  Score=43.77  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=31.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.|+|++...
T Consensus       149 ~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~l  182 (437)
T 4eqs_A          149 KVLVVGAGYVSLEVLENLYE-RGLHPTLIHRSDKI  182 (437)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-HTCEEEEEESSSCC
T ss_pred             EEEEECCccchhhhHHHHHh-cCCcceeeeeeccc
Confidence            69999999999999999997 69999999999764

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=91.23  E-value=0.2  Score=44.10  Aligned_cols=33  Identities=12%  Similarity=0.100  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++++.+.
T Consensus       199 ~VvVVG~G~sg~eiA~~l~~-~g~~V~li~~~~~  231 (464)
T 2xve_A          199 TVLLVGSSYSAEDIGSQCYK-YGAKKLISCYRTA  231 (464)
T ss_dssp             EEEEECCSTTHHHHHHHHHH-TTCSEEEEECSSC
T ss_pred             EEEEEcCCCCHHHHHHHHHH-hCCeEEEEEECCC
Confidence            59999999999999999997 6899999998754

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=91.21  E-value=0.24  Score=43.15  Aligned_cols=34  Identities=24%  Similarity=0.476  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       151 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  184 (452)
T 2cdu_A          151 TITIIGSGYIGAELAEAYSN-QNYNVNLIDGHERV  184 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHT-TTCEEEEEESSSST
T ss_pred             eEEEECcCHHHHHHHHHHHh-cCCEEEEEEcCCch
Confidence            68999999999999999997 69999999998753

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=91.15  E-value=0.22  Score=40.85  Aligned_cols=35  Identities=11%  Similarity=0.170  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.++++.+..
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~-~g~~V~lv~~~~~~  194 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTK-YGSKVYIIHRRDAF  194 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTT-TSSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHh-cCCeEEEEecCCcC
Confidence            369999999999999999997 68999999998653

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=91.06  E-value=0.18  Score=41.43  Aligned_cols=35  Identities=23%  Similarity=0.252  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.++++++..
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~-~g~~V~~v~~~~~~  187 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLD-TARRITLIHRRPQF  187 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTT-TSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHh-hCCEEEEEEcCCcc
Confidence            369999999999999999997 68999999998754

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=91.06  E-value=0.25  Score=43.22  Aligned_cols=35  Identities=23%  Similarity=0.272  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  209 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWAR-LGAEVTVVEFAPRC  209 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHH-hCCEEEEEecCCcc
Confidence            368999999999999999997 79999999998753

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=91.04  E-value=0.26  Score=43.10  Aligned_cols=34  Identities=12%  Similarity=0.137  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       178 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  211 (467)
T 1zk7_A          178 RLAVIGSSVVALELAQAFAR-LGSKVTVLARNTLF  211 (467)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSCTT
T ss_pred             EEEEECCCHHHHHHHHHHHH-cCCEEEEEEECCcc
Confidence            58999999999999999997 69999999998753

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=90.97  E-value=0.24  Score=40.95  Aligned_cols=35  Identities=20%  Similarity=0.257  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.++++++..
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~-~g~~V~l~~~~~~~  190 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTR-FARSVTLVHRRDEF  190 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTT-TCSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHH-hCCeEEEEEcCCcC
Confidence            468999999999999999997 68999999988653

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=90.91  E-value=0.23  Score=42.24  Aligned_cols=32  Identities=28%  Similarity=0.440  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+.|||+|.-|+-.|..++. .|.+|.|+|.-+
T Consensus         8 ~VaViGaG~MG~giA~~~a~-~G~~V~l~D~~~   39 (319)
T 3ado_A            8 DVLIVGSGLVGRSWAMLFAS-GGFRVKLYDIEP   39 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCCEEEECSCH
T ss_pred             eEEEECCcHHHHHHHHHHHh-CCCeEEEEECCH
Confidence            58899999999999999997 799999998654

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=90.76  E-value=0.26  Score=40.12  Aligned_cols=35  Identities=14%  Similarity=0.159  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.++++.+..
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~-~g~~Vtlv~~~~~~  180 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSN-IASEVHLIHRRDGF  180 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTT-TSSEEEEECSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHh-cCCeEEEEEeCCcc
Confidence            368999999999999999997 69999999988653

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=90.74  E-value=0.25  Score=41.59  Aligned_cols=31  Identities=39%  Similarity=0.531  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      .+.|||+|.-|+.+|.+|++ .|.+|.++.+.
T Consensus         5 kI~IiGaG~~G~~~a~~L~~-~g~~V~~~~r~   35 (335)
T 3ghy_A            5 RICIVGAGAVGGYLGARLAL-AGEAINVLARG   35 (335)
T ss_dssp             CEEEESCCHHHHHHHHHHHH-TTCCEEEECCH
T ss_pred             EEEEECcCHHHHHHHHHHHH-CCCEEEEEECh
Confidence            58999999999999999998 68999999875

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=90.65  E-value=0.27  Score=40.33  Aligned_cols=33  Identities=12%  Similarity=0.213  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++++++.
T Consensus       154 ~v~VvG~G~~g~e~A~~l~~-~g~~Vtlv~~~~~  186 (325)
T 2q7v_A          154 KVVVIGGGDAAVEEGMFLTK-FADEVTVIHRRDT  186 (325)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TCSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHh-cCCEEEEEeCCCc
Confidence            68999999999999999997 6899999998864

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=90.62  E-value=0.36  Score=37.90  Aligned_cols=36  Identities=14%  Similarity=0.305  Sum_probs=30.0

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ..-.+.|||+|..|..+|..|++ .+.+|.++++.+.
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~-~g~~V~~~~~~~~   53 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEI-AGHEVTYYGSKDQ   53 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHH-TTCEEEEECTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEcCCHH
Confidence            34569999999999999999997 6899999987643

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=90.62  E-value=0.24  Score=44.76  Aligned_cols=34  Identities=15%  Similarity=0.250  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.|+++.+.
T Consensus       186 krV~VIG~G~tgve~a~~la~-~~~~Vtv~~r~~~  219 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAE-TAKELYVFQRTPN  219 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TBSEEEEEESSCC
T ss_pred             CeEEEECCCccHHHHHHHHHh-hCCEEEEEEcCCC
Confidence            369999999999999999997 6899999999986

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=90.61  E-value=0.27  Score=44.43  Aligned_cols=34  Identities=15%  Similarity=0.224  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.|+++.+.
T Consensus       179 krV~VIG~G~sgve~a~~l~~-~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          179 RRVGVIGTGSTGQQVITSLAP-EVEHLTVFVRTPQ  212 (540)
T ss_dssp             SEEEEECCSHHHHHHHHHHTT-TCSEEEEEESSCC
T ss_pred             ceEEEECCCchHHHHHHHHHh-hCCEEEEEECCCC
Confidence            369999999999999999997 6899999999986

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=90.57  E-value=0.29  Score=43.71  Aligned_cols=34  Identities=21%  Similarity=0.251  Sum_probs=31.2

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       153 ~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~  186 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHH-LGIKTTLLELADQV  186 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHh-cCCcEEEEEcCCcc
Confidence            69999999999999999997 69999999998754

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=90.55  E-value=0.29  Score=40.46  Aligned_cols=32  Identities=22%  Similarity=0.401  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+.|||+|.-|..+|..|++ .|.+|.++++.+
T Consensus        17 ~I~VIG~G~mG~~iA~~la~-~G~~V~~~d~~~   48 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAA-TGHTVVLVDQTE   48 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence            48999999999999999997 799999998753

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=90.53  E-value=0.27  Score=43.11  Aligned_cols=33  Identities=24%  Similarity=0.388  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .+||||.|..|..+|..|.+ .|.+|++||..+.
T Consensus         6 ~viIiG~Gr~G~~va~~L~~-~g~~vvvId~d~~   38 (413)
T 3l9w_A            6 RVIIAGFGRFGQITGRLLLS-SGVKMVVLDHDPD   38 (413)
T ss_dssp             SEEEECCSHHHHHHHHHHHH-TTCCEEEEECCHH
T ss_pred             eEEEECCCHHHHHHHHHHHH-CCCCEEEEECCHH
Confidence            59999999999999999997 6999999998754

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=90.51  E-value=0.19  Score=41.50  Aligned_cols=32  Identities=22%  Similarity=0.362  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+.|||+|.-|+.+|..|++ .|.+|.++.+..
T Consensus         4 kI~iiGaGa~G~~~a~~L~~-~g~~V~~~~r~~   35 (294)
T 3g17_A            4 SVAIIGPGAVGTTIAYELQQ-SLPHTTLIGRHA   35 (294)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-HCTTCEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHH-CCCeEEEEEecc
Confidence            48999999999999999997 588999998874

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=90.46  E-value=0.29  Score=39.97  Aligned_cols=35  Identities=11%  Similarity=0.182  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.++++++..
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~-~g~~v~~v~~~~~~  208 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTK-YGSKVFMLVRKDHL  208 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTT-TSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHh-cCCEEEEEEcCCcc
Confidence            458999999999999999997 68999999998754

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=90.30  E-value=0.16  Score=45.08  Aligned_cols=33  Identities=39%  Similarity=0.668  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .+||+|+|-.|..+|..|++ .+++|.|||..+.
T Consensus         5 ~iiI~G~G~vG~~la~~L~~-~~~~v~vId~d~~   37 (461)
T 4g65_A            5 KIIILGAGQVGGTLAENLVG-ENNDITIVDKDGD   37 (461)
T ss_dssp             EEEEECCSHHHHHHHHHTCS-TTEEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHH-CCCCEEEEECCHH
Confidence            38999999999999999997 6999999998754

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=90.28  E-value=0.32  Score=39.73  Aligned_cols=32  Identities=28%  Similarity=0.380  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+.|||+|..|..+|..|++ .|.+|.++++.+
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~-~g~~V~~~~r~~   36 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQ-GGNDVTLIDQWP   36 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             eEEEECcCHHHHHHHHHHHh-CCCcEEEEECCH
Confidence            48899999999999999997 689999998743

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=90.25  E-value=0.33  Score=42.55  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       174 ~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~  207 (466)
T 3l8k_A          174 DMVIIGAGYIGLEIASIFRL-MGVQTHIIEMLDRA  207 (466)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCEEEEEEeCCcC
Confidence            69999999999999999997 79999999998754

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=90.22  E-value=0.36  Score=41.45  Aligned_cols=34  Identities=26%  Similarity=0.315  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+.+..
T Consensus       154 ~vvViGgG~~g~e~A~~l~~-~g~~Vtvv~~~~~~  187 (415)
T 3lxd_A          154 NAVVIGGGYIGLEAAAVLTK-FGVNVTLLEALPRV  187 (415)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSST
T ss_pred             eEEEECCCHHHHHHHHHHHh-cCCeEEEEecCCch
Confidence            58999999999999999997 79999999998764

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=90.16  E-value=0.33  Score=39.87  Aligned_cols=32  Identities=19%  Similarity=0.337  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      -+.|||+|.-|..+|..|++ .|.+|.+.++.+
T Consensus         6 kV~VIGaG~mG~~iA~~la~-~G~~V~l~d~~~   37 (283)
T 4e12_A            6 NVTVLGTGVLGSQIAFQTAF-HGFAVTAYDINT   37 (283)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence            47899999999999999997 799999998764

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=90.05  E-value=0.27  Score=43.35  Aligned_cols=34  Identities=29%  Similarity=0.305  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       200 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  233 (491)
T 3urh_A          200 SMIVVGGGVIGLELGSVWAR-LGAKVTVVEFLDTI  233 (491)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCEEEEEeccccc
Confidence            58999999999999999997 58999999998764

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=89.99  E-value=0.35  Score=42.38  Aligned_cols=33  Identities=24%  Similarity=0.203  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++++++.
T Consensus       189 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~  221 (478)
T 3dk9_A          189 RSVIVGAGYIAVEMAGILSA-LGSKTSLMIRHDK  221 (478)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHH-cCCeEEEEEeCCc
Confidence            58999999999999999997 6999999999865

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=89.98  E-value=0.35  Score=41.42  Aligned_cols=34  Identities=21%  Similarity=0.340  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+.+..
T Consensus       144 ~vvViGgG~~g~e~A~~l~~-~g~~Vtvv~~~~~~  177 (404)
T 3fg2_P          144 HVVVIGAGFIGLEFAATARA-KGLEVDVVELAPRV  177 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSST
T ss_pred             eEEEECCCHHHHHHHHHHHh-CCCEEEEEeCCCcc
Confidence            58999999999999999997 69999999998764

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=89.88  E-value=0.28  Score=44.37  Aligned_cols=34  Identities=15%  Similarity=0.308  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.|+++.+.
T Consensus       192 krV~VIG~G~sgve~a~~l~~-~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          192 KRVGVIGTGSSGIQSIPIIAE-QAEQLFVFQRSAN  225 (549)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-HBSEEEEEESSCC
T ss_pred             CEEEEECCCchHHHHHHHHHh-hCCEEEEEECCCC
Confidence            469999999999999999998 5899999999986

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=89.87  E-value=0.35  Score=40.08  Aligned_cols=33  Identities=33%  Similarity=0.501  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCC--eEEEEecCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSW--NILLVEAGG   76 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~--~VLvLEaG~   76 (197)
                      -.+.|||+|..|..+|..|++ .+.  +|.++++..
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~-~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQ-RGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCCCCEEEEEeCCh
Confidence            358999999999999999997 677  899998764

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=89.87  E-value=0.34  Score=43.86  Aligned_cols=31  Identities=16%  Similarity=0.161  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|++
T Consensus       288 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~  318 (598)
T 2x8g_A          288 KTLVIGASYVALECAGFLAS-LGGDVTVMVRS  318 (598)
T ss_dssp             SEEEECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHH-cCCEEEEEECC
Confidence            58999999999999999997 68999999987

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=89.83  E-value=0.24  Score=43.02  Aligned_cols=37  Identities=14%  Similarity=0.162  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~   78 (197)
                      .-.++|||+|..|+-+|..|++. ++.+|.++++.+..
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL  264 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence            45799999999999999999973 38899999998754

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=89.69  E-value=0.33  Score=39.68  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++++++..
T Consensus       157 ~v~viG~G~~g~e~a~~l~~-~g~~V~~i~~~~~~  190 (319)
T 3cty_A          157 RVVTIGGGNSGAIAAISMSE-YVKNVTIIEYMPKY  190 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TBSEEEEECSSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHh-hCCcEEEEEcCCcc
Confidence            68999999999999999997 68999999987643

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=89.67  E-value=0.28  Score=40.94  Aligned_cols=34  Identities=24%  Similarity=0.333  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++++++..
T Consensus       165 ~vvVvG~G~~g~e~A~~l~~-~g~~V~lv~~~~~~  198 (360)
T 3ab1_A          165 RVVIVGGGDSALDWTVGLIK-NAASVTLVHRGHEF  198 (360)
T ss_dssp             EEEEECSSHHHHHHHHHTTT-TSSEEEEECSSSSC
T ss_pred             cEEEECCCHHHHHHHHHHHh-cCCEEEEEEcCCCC
Confidence            68999999999999999997 68999999998653

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=89.40  E-value=0.44  Score=41.65  Aligned_cols=34  Identities=26%  Similarity=0.274  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       182 ~v~ViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~  215 (476)
T 3lad_A          182 KLGVIGAGVIGLELGSVWAR-LGAEVTVLEAMDKF  215 (476)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCc
Confidence            58999999999999999997 69999999998753

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=89.27  E-value=0.36  Score=42.86  Aligned_cols=33  Identities=15%  Similarity=0.119  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhC---CCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVR---SWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~---g~~VLvLEaG~~   77 (197)
                      .++|||+|..|+-+|..|++ .   +.+|.++|+++.
T Consensus       193 ~vvViGgG~ig~E~A~~l~~-~~~~g~~Vtlv~~~~~  228 (495)
T 2wpf_A          193 RVLTVGGGFISVEFAGIFNA-YKPPGGKVTLCYRNNL  228 (495)
T ss_dssp             EEEEECSSHHHHHHHHHHHH-HCCTTCEEEEEESSSS
T ss_pred             eEEEECCCHHHHHHHHHHHh-hCCCCCeEEEEEcCCc
Confidence            69999999999999999997 5   899999999875

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=89.11  E-value=0.48  Score=41.23  Aligned_cols=34  Identities=18%  Similarity=0.212  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       149 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  182 (452)
T 3oc4_A          149 TVAVIGAGPIGMEAIDFLVK-MKKTVHVFESLENL  182 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCeEEEEEccCcc
Confidence            58999999999999999997 79999999998753

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=88.93  E-value=0.42  Score=39.96  Aligned_cols=35  Identities=29%  Similarity=0.494  Sum_probs=27.8

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      +...-.+.|||+|.-|+.+|..|++ .|.+|.++ +.
T Consensus        16 ~~~~~kI~IiGaGa~G~~~a~~L~~-~G~~V~l~-~~   50 (318)
T 3hwr_A           16 YFQGMKVAIMGAGAVGCYYGGMLAR-AGHEVILI-AR   50 (318)
T ss_dssp             ----CEEEEESCSHHHHHHHHHHHH-TTCEEEEE-CC
T ss_pred             hccCCcEEEECcCHHHHHHHHHHHH-CCCeEEEE-Ec
Confidence            3345578999999999999999998 78999988 54

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=88.92  E-value=0.39  Score=42.49  Aligned_cols=33  Identities=18%  Similarity=0.127  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhC---CCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVR---SWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~---g~~VLvLEaG~~   77 (197)
                      .++|||+|..|+-+|..|++ .   +.+|.++|+++.
T Consensus       189 ~vvViGgG~ig~E~A~~l~~-~~~~g~~Vtlv~~~~~  224 (490)
T 1fec_A          189 RALCVGGGYISIEFAGIFNA-YKARGGQVDLAYRGDM  224 (490)
T ss_dssp             EEEEECSSHHHHHHHHHHHH-HSCTTCEEEEEESSSS
T ss_pred             eEEEECCCHHHHHHHHHHHh-hccCcCeEEEEEcCCC
Confidence            68999999999999999997 5   899999999875

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=88.79  E-value=0.3  Score=43.68  Aligned_cols=35  Identities=31%  Similarity=0.367  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHhh-------------CCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEV-------------RSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~-------------~g~~VLvLEaG~~~   78 (197)
                      .++|||+|+.|+-+|..|++.             .+.+|.|+|+++..
T Consensus       219 ~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~i  266 (502)
T 4g6h_A          219 SIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIV  266 (502)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSS
T ss_pred             ceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEecccccc
Confidence            589999999999999998751             23689999999864

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=88.71  E-value=0.46  Score=42.84  Aligned_cols=34  Identities=26%  Similarity=0.433  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       189 ~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~  222 (588)
T 3ics_A          189 HATVIGGGFIGVEMVENLRE-RGIEVTLVEMANQV  222 (588)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHh-CCCeEEEEecCCcc
Confidence            68999999999999999997 79999999998753

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=88.71  E-value=0.41  Score=38.65  Aligned_cols=35  Identities=17%  Similarity=0.135  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.++++++..
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~-~g~~v~~~~~~~~~  189 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSS-YSTKVYLIHRRDTF  189 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-HSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHH-hCCeEEEEEeCCCC
Confidence            469999999999999999998 58999999998754

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=88.70  E-value=0.48  Score=39.60  Aligned_cols=32  Identities=22%  Similarity=0.441  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+.|||+|..|..+|..|++ .|.+|.++++.+
T Consensus         6 ki~iiG~G~~G~~~a~~L~~-~g~~V~~~~r~~   37 (359)
T 1bg6_A            6 TYAVLGLGNGGHAFAAYLAL-KGQSVLAWDIDA   37 (359)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHh-CCCEEEEEeCCH
Confidence            58999999999999999997 689999998753

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=88.43  E-value=0.54  Score=41.94  Aligned_cols=35  Identities=6%  Similarity=0.081  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~-~G~~Vtlv~~~~~~  249 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNA-TGRRTVMLVRTEPL  249 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCeEEEEEecCcc
Confidence            468999999999999999997 69999999998753

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=88.36  E-value=0.44  Score=38.66  Aligned_cols=35  Identities=26%  Similarity=0.337  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~   77 (197)
                      .-.++|||+|-.|+.+|..|++ .|. ++.|++....
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~-~Gv~~i~lvD~d~v   66 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLAS-AGVGNLTLLDFDTV   66 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHH-HTCSEEEEECCCBC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHH-cCCCeEEEEcCCCc
Confidence            4579999999999999999998 685 8899988753

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=88.24  E-value=0.42  Score=39.61  Aligned_cols=29  Identities=28%  Similarity=0.421  Sum_probs=26.9

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEA   74 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa   74 (197)
                      +.|||+|..|..+|..|++ .|.+|.++++
T Consensus         3 I~iiG~G~mG~~~a~~L~~-~g~~V~~~~r   31 (335)
T 1txg_A            3 VSILGAGAMGSALSVPLVD-NGNEVRIWGT   31 (335)
T ss_dssp             EEEESCCHHHHHHHHHHHH-HCCEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHh-CCCeEEEEEc
Confidence            7899999999999999997 6899999987

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=88.18  E-value=0.54  Score=39.38  Aligned_cols=34  Identities=29%  Similarity=0.531  Sum_probs=30.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +..+.|||+|.-|+.+|.+|++ .|.+|.++.+.+
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~-~G~~V~~~~r~~   47 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHE-NGEEVILWARRK   47 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSH
T ss_pred             CCcEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence            5679999999999999999997 799999997753

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=88.16  E-value=0.58  Score=41.20  Aligned_cols=32  Identities=16%  Similarity=0.076  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+..
T Consensus       187 ~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~  218 (488)
T 3dgz_A          187 KTLVVGASYVALECAGFLTG-IGLDTTVMMRSI  218 (488)
T ss_dssp             SEEEECCSHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCceEEEEcCc
Confidence            58999999999999999997 699999999874

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=88.13  E-value=0.55  Score=41.48  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~~  217 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTE-LGVPVTVVASQDHV  217 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCCcc
Confidence            368999999999999999997 69999999998753

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=88.02  E-value=0.57  Score=38.96  Aligned_cols=31  Identities=23%  Similarity=0.330  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+.|||+|.-|+.+|..|+  .+.+|.++.+..
T Consensus         4 kI~IiGaGa~G~~~a~~L~--~g~~V~~~~r~~   34 (307)
T 3ego_A            4 KIGIIGGGSVGLLCAYYLS--LYHDVTVVTRRQ   34 (307)
T ss_dssp             EEEEECCSHHHHHHHHHHH--TTSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHh--cCCceEEEECCH
Confidence            4899999999999999999  489999998875

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=87.85  E-value=0.54  Score=41.95  Aligned_cols=34  Identities=18%  Similarity=0.490  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ...+.|||.|.-|+.+|..|++ .|.+|.+++..+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~-~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLAD-IGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHh-CCCEEEEEECCH
Confidence            4578999999999999999998 799999998754

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=87.74  E-value=0.43  Score=42.68  Aligned_cols=35  Identities=23%  Similarity=0.253  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~-~g~~Vtlv~~~~~l  390 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAG-IVEHVTLLEFAPEM  390 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-HBSEEEEECSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHh-hCCEEEEEEeCccc
Confidence            368999999999999999997 58999999988653

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=87.56  E-value=0.69  Score=35.71  Aligned_cols=31  Identities=29%  Similarity=0.377  Sum_probs=27.5

Q ss_pred             EEEEC-CChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          45 FIIVG-AGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        45 ~IIVG-sG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +.||| +|..|..+|.+|++ .+.+|.++++..
T Consensus         3 i~iiGa~G~~G~~ia~~l~~-~g~~V~~~~r~~   34 (212)
T 1jay_A            3 VALLGGTGNLGKGLALRLAT-LGHEIVVGSRRE   34 (212)
T ss_dssp             EEEETTTSHHHHHHHHHHHT-TTCEEEEEESSH
T ss_pred             EEEEcCCCHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence            68999 99999999999997 689999998753

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=87.45  E-value=0.64  Score=40.89  Aligned_cols=34  Identities=24%  Similarity=0.283  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.++|+++.
T Consensus       192 ~~v~ViGgG~~g~e~A~~l~~-~g~~Vtli~~~~~  225 (484)
T 3o0h_A          192 KSIVIVGGGYIGVEFANIFHG-LGVKTTLLHRGDL  225 (484)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHH-cCCeEEEEECCCc
Confidence            368999999999999999997 6999999999875

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=87.42  E-value=0.58  Score=37.96  Aligned_cols=35  Identities=14%  Similarity=0.118  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.++++++..
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~-~~~~v~~~~~~~~~  189 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEP-IAKEVSIIHRRDKF  189 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTT-TBSEEEEECSSSSC
T ss_pred             CEEEEECCCHhHHHHHHHHHh-hCCeEEEEEecCcC
Confidence            368999999999999999997 68999999998764

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=87.40  E-value=0.66  Score=37.32  Aligned_cols=35  Identities=20%  Similarity=0.199  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.++++++..
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~-~g~~v~~~~~~~~~  182 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLAN-ICSKIYLIHRRDEF  182 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHT-TSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHh-hCCEEEEEEeCCCC
Confidence            368999999999999999997 68999999998754

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=87.36  E-value=0.51  Score=41.24  Aligned_cols=35  Identities=29%  Similarity=0.337  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhhC-CCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVR-SWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~-g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ . +.+|.++|+++..
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~-~~g~~Vtlv~~~~~~  195 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLAD-MWGIDTTVVELADQI  195 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-HHCCEEEEECSSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHH-hcCCcEEEEEccCcc
Confidence            369999999999999999997 6 8999999998753

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=87.20  E-value=0.64  Score=41.43  Aligned_cols=31  Identities=19%  Similarity=0.187  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++|+.
T Consensus       212 ~vvVIGgG~ig~E~A~~l~~-~G~~Vtlv~~~  242 (519)
T 3qfa_A          212 KTLVVGASYVALECAGFLAG-IGLDVTVMVRS  242 (519)
T ss_dssp             SEEEECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             eEEEECCcHHHHHHHHHHHH-cCCeEEEEecc
Confidence            48999999999999999997 69999999985

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=87.04  E-value=0.44  Score=39.61  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=29.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      --++|||+|..|...|..|.+ .|.+|.|++...
T Consensus        14 k~VLVVGgG~va~rka~~Ll~-~Ga~VtViap~~   46 (274)
T 1kyq_A           14 KRILLIGGGEVGLTRLYKLMP-TGCKLTLVSPDL   46 (274)
T ss_dssp             CEEEEEEESHHHHHHHHHHGG-GTCEEEEEEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHh-CCCEEEEEcCCC
Confidence            458999999999999999997 799999998643

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=86.87  E-value=0.81  Score=41.14  Aligned_cols=35  Identities=23%  Similarity=0.388  Sum_probs=31.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.+||||.|..|..+|..|.+ .+.+|++||.-+..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~-~g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDR-KPVPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH-TTCCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHH-CCCCEEEEECChHH
Confidence            569999999999999999997 69999999988764

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=86.79  E-value=0.58  Score=37.35  Aligned_cols=33  Identities=12%  Similarity=-0.001  Sum_probs=29.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -.++|||+|..|+-+|..|++ .+ +|.+++++..
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~-~g-~v~~v~~~~~  174 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPD-WG-ETTFFTNGIV  174 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGG-TS-EEEEECTTTC
T ss_pred             CEEEEEecCccHHHHHHHhhh-cC-cEEEEECCCC
Confidence            468999999999999999997 57 9999998865

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=86.66  E-value=0.66  Score=41.11  Aligned_cols=32  Identities=25%  Similarity=0.340  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+.|||+|.-|+.+|..|++ .|.+|.+++..+
T Consensus        39 kV~VIGaG~MG~~iA~~la~-~G~~V~l~D~~~   70 (463)
T 1zcj_A           39 SVGVLGLGTMGRGIAISFAR-VGISVVAVESDP   70 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHT-TTCEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence            48999999999999999997 799999998754

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=86.53  E-value=0.52  Score=38.64  Aligned_cols=30  Identities=20%  Similarity=0.366  Sum_probs=27.2

Q ss_pred             cEEEECCChHHHHHHHHHHhhC-----C-CeEEEEec
Q psy6708          44 DFIIVGAGTAGSILASRLAEVR-----S-WNILLVEA   74 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~-----g-~~VLvLEa   74 (197)
                      .+.|||+|.-|+.+|.+|++ .     | .+|.++++
T Consensus        10 ~I~iiG~G~mG~~~a~~L~~-~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A           10 KIAVFGLGGVGGYYGAMLAL-RAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-HHHHTTSSEEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHh-CccccCCCCCEEEEEc
Confidence            58999999999999999997 5     7 89999876

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=86.50  E-value=0.81  Score=40.64  Aligned_cols=35  Identities=14%  Similarity=0.194  Sum_probs=30.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ....+.|||.|.-|+.+|..||+ .|.+|+.+|..+
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~-~G~~V~g~Did~   54 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFAL-LGHRVVGYDVNP   54 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH-HTCEEEEECSCH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHh-CCCcEEEEECCH
Confidence            45689999999999999999997 699999998654

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=86.49  E-value=0.54  Score=40.37  Aligned_cols=30  Identities=13%  Similarity=0.252  Sum_probs=26.5

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEe
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVE   73 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLE   73 (197)
                      .+.|||+|..|+.+|..|++..|.+|.+++
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            478999999999999999862489999998

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=86.43  E-value=0.69  Score=38.65  Aligned_cols=33  Identities=15%  Similarity=0.423  Sum_probs=28.8

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~   77 (197)
                      .+.|||+|..|..+|..|++ .+. +|.+++....
T Consensus         6 kI~VIGaG~~G~~ia~~la~-~g~~~V~l~D~~~~   39 (317)
T 2ewd_A            6 KIAVIGSGQIGGNIAYIVGK-DNLADVVLFDIAEG   39 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-HTCCEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCceEEEEeCCch
Confidence            58999999999999999997 577 8999988653

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=86.42  E-value=0.79  Score=39.97  Aligned_cols=34  Identities=18%  Similarity=0.218  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.++|+++.
T Consensus       171 ~~v~ViGgG~~g~e~A~~l~~-~g~~Vt~v~~~~~  204 (463)
T 4dna_A          171 ESILIAGGGYIAVEFANIFHG-LGVKTTLIYRGKE  204 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCCc
Confidence            368999999999999999997 6999999999875

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=86.35  E-value=0.64  Score=40.66  Aligned_cols=31  Identities=26%  Similarity=0.455  Sum_probs=28.0

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +.|||.|..|+.+|..|++ .|.+|.++++.+
T Consensus         3 I~VIG~G~vG~~~A~~la~-~G~~V~~~d~~~   33 (436)
T 1mv8_A            3 ISIFGLGYVGAVCAGCLSA-RGHEVIGVDVSS   33 (436)
T ss_dssp             EEEECCSTTHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             EEEECCCHHHHHHHHHHHH-CCCEEEEEECCH
Confidence            7899999999999999998 799999998753

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=86.32  E-value=0.88  Score=35.72  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      -.+.|||+|..|..+|..|++ .+.+|.++++..
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~-~g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVG-SGFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH-TTCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence            459999999999999999997 688999988754

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=86.32  E-value=0.67  Score=37.35  Aligned_cols=33  Identities=18%  Similarity=0.239  Sum_probs=28.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      .--++|||+|..|...|..|.+ .|.+|.|+..-
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~-~GA~VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQ-EGAAITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGG-GCCCEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-CCCEEEEECCC
Confidence            3478999999999999999997 69999999753

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=86.18  E-value=0.37  Score=38.09  Aligned_cols=33  Identities=15%  Similarity=0.076  Sum_probs=28.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -.++|+|.|..|..+|..|.+ .+. |.++|+-+.
T Consensus        10 ~~viI~G~G~~G~~la~~L~~-~g~-v~vid~~~~   42 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRG-SEV-FVLAEDENV   42 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTT-SEE-EEEESCGGG
T ss_pred             CEEEEECCChHHHHHHHHHHh-CCe-EEEEECCHH
Confidence            359999999999999999987 588 999987643

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=86.10  E-value=0.84  Score=38.03  Aligned_cols=31  Identities=32%  Similarity=0.401  Sum_probs=27.4

Q ss_pred             EEEECCChHHHHHHHHHHhhCCC--eEEEEecCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSW--NILLVEAGG   76 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~--~VLvLEaG~   76 (197)
                      +.|||+|..|..+|..|++ .+.  .|.++|...
T Consensus         3 I~VIGaG~vG~~la~~la~-~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            3 VGVVGTGFVGSTAAFALVL-RGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEECCSHHHHHHHHHHHH-TTCCSEEEEECSSH
T ss_pred             EEEECCCHHHHHHHHHHHh-CCCCCEEEEEeCCH
Confidence            7899999999999999997 577  899998754

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=86.00  E-value=0.93  Score=39.76  Aligned_cols=32  Identities=22%  Similarity=0.203  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .++|||+|..|+-+|..|++ .+.+|.++++..
T Consensus       189 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~  220 (483)
T 3dgh_A          189 KTLVVGAGYIGLECAGFLKG-LGYEPTVMVRSI  220 (483)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHH-cCCEEEEEeCCC
Confidence            58999999999999999997 699999999853

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=85.83  E-value=0.82  Score=40.43  Aligned_cols=32  Identities=28%  Similarity=0.423  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+.|||.|.-|+.+|..|++ .|.+|.+++..+
T Consensus         4 kI~VIG~G~vG~~lA~~La~-~G~~V~~~D~~~   35 (450)
T 3gg2_A            4 DIAVVGIGYVGLVSATCFAE-LGANVRCIDTDR   35 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHh-cCCEEEEEECCH
Confidence            47899999999999999998 699999998764

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=85.80  E-value=0.76  Score=37.53  Aligned_cols=32  Identities=13%  Similarity=0.342  Sum_probs=27.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      -.++|||+|..|+-+|..|++ .+ +|.+++++.
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~-~~-~v~~v~~~~  195 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVST-VA-ETTWITQHE  195 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTT-TS-EEEEECSSC
T ss_pred             CEEEEECCCcCHHHHHHHHHh-hC-CEEEEECCC
Confidence            479999999999999999997 45 698888874

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=85.78  E-value=0.82  Score=40.76  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -+.|||+|.-|..+|..|++ .|.+|.+.|.-+.
T Consensus        56 kVaVIGaG~MG~~IA~~la~-aG~~V~l~D~~~e   88 (460)
T 3k6j_A           56 SVAIIGGGTMGKAMAICFGL-AGIETFLVVRNEQ   88 (460)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHH
T ss_pred             EEEEECCCHHHHHHHHHHHH-CCCeEEEEECcHH
Confidence            58999999999999999997 7999999987543

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=85.74  E-value=1  Score=36.06  Aligned_cols=35  Identities=20%  Similarity=0.388  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .-.+.|||.|.-|..+|..|++ .|.+|.+.++.+.
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~-~G~~V~~~~r~~~   53 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALAD-LGHEVTIGTRDPK   53 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-CCCEEEEEeCChh
Confidence            4568999999999999999997 6999999987643

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=85.68  E-value=0.88  Score=40.07  Aligned_cols=35  Identities=20%  Similarity=0.218  Sum_probs=29.3

Q ss_pred             ccEEEECCChHHHHHHHHHHh-------------------hCCC-eEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAE-------------------VRSW-NILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae-------------------~~g~-~VLvLEaG~~   77 (197)
                      -.++|||+|..|+-+|..|++                   ..+. +|.|+++.+.
T Consensus       146 ~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          146 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence            469999999999999999983                   2465 7999998864

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=85.57  E-value=0.8  Score=39.20  Aligned_cols=33  Identities=30%  Similarity=0.367  Sum_probs=29.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      -.+.|||+|.-|..+|..|++ .|.+|.+.++.+
T Consensus        30 mkI~VIGaG~mG~alA~~La~-~G~~V~l~~r~~   62 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLAR-KGQKVRLWSYES   62 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHT-TTCCEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHH-CCCeEEEEeCCH
Confidence            469999999999999999997 689999998754

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=85.27  E-value=1.1  Score=37.81  Aligned_cols=34  Identities=24%  Similarity=0.403  Sum_probs=29.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~   77 (197)
                      -.+.|||+|..|..+|..|++ .+. +|.++|.-..
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~-~g~~~V~L~Di~~~   49 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQ-KDLGDVYMFDIIEG   49 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCCEEEEECSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCCCeEEEEECCHH
Confidence            369999999999999999997 577 8999988653

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=85.06  E-value=0.6  Score=39.47  Aligned_cols=32  Identities=19%  Similarity=0.375  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+.|||+|.-|..+|..|++ .|.+|.++++.+
T Consensus        17 kI~iIG~G~mG~~la~~L~~-~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSK-KCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHh-CCCEEEEEECCH
Confidence            59999999999999999997 689999997753

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=85.04  E-value=0.79  Score=41.52  Aligned_cols=33  Identities=12%  Similarity=0.106  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|..|+-+|.-+++ -|.+|.|+++...
T Consensus       225 ~lvIIGgG~IGlE~A~~~~~-lG~~VTii~~~~~  257 (542)
T 4b1b_A          225 KTLVVGASYVALECSGFLNS-LGYDVTVAVRSIV  257 (542)
T ss_dssp             SEEEECCSHHHHHHHHHHHH-HTCCEEEEESSCS
T ss_pred             eEEEECCCHHHHHHHHHHHh-cCCeEEEeccccc
Confidence            58999999999999999997 6999999997543

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=84.96  E-value=0.44  Score=34.76  Aligned_cols=32  Identities=16%  Similarity=0.295  Sum_probs=27.8

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+.|||+|..|..+|..|.+ .+.+|.+.++-.
T Consensus        23 ~v~iiG~G~iG~~~a~~l~~-~g~~v~v~~r~~   54 (144)
T 3oj0_A           23 KILLVGNGMLASEIAPYFSY-PQYKVTVAGRNI   54 (144)
T ss_dssp             EEEEECCSHHHHHHGGGCCT-TTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCEEEEEcCCH
Confidence            48999999999999999987 688888888754

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=84.89  E-value=1.2  Score=37.05  Aligned_cols=33  Identities=30%  Similarity=0.492  Sum_probs=28.5

Q ss_pred             EEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708          45 FIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD   77 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~   77 (197)
                      +.|||+|..|..+|..|++. .+..|.++|....
T Consensus         3 I~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~   36 (310)
T 1guz_A            3 ITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (310)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence            78999999999999999973 3689999998654

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=84.52  E-value=1.3  Score=35.52  Aligned_cols=33  Identities=24%  Similarity=0.415  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -++|.|+|.-|..++.+|.+ .|.+|.++.+...
T Consensus         5 ~ilVtGaG~iG~~l~~~L~~-~g~~V~~~~r~~~   37 (286)
T 3gpi_A            5 KILIAGCGDLGLELARRLTA-QGHEVTGLRRSAQ   37 (286)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-TTCCEEEEECTTS
T ss_pred             cEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCcc
Confidence            38999999999999999997 6899999987644

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=84.52  E-value=1.1  Score=37.02  Aligned_cols=33  Identities=24%  Similarity=0.442  Sum_probs=29.1

Q ss_pred             cEEEEC-CChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVG-AGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVG-sG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .+.||| .|.-|..+|..|++ .|.+|.++++...
T Consensus        23 ~I~iIGg~G~mG~~la~~l~~-~G~~V~~~~~~~~   56 (298)
T 2pv7_A           23 KIVIVGGYGKLGGLFARYLRA-SGYPISILDREDW   56 (298)
T ss_dssp             CEEEETTTSHHHHHHHHHHHT-TTCCEEEECTTCG
T ss_pred             EEEEEcCCCHHHHHHHHHHHh-CCCeEEEEECCcc
Confidence            589999 99999999999997 6899999987643

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=84.40  E-value=1.2  Score=36.39  Aligned_cols=33  Identities=21%  Similarity=0.407  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .+.|||.|.-|..+|..|++ .|.+|.+.++.+.
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~-~G~~V~~~dr~~~   35 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVK-AGCSVTIWNRSPE   35 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSGG
T ss_pred             EEEEEeecHHHHHHHHHHHH-CCCeEEEEcCCHH
Confidence            37899999999999999997 7999999987654

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=84.35  E-value=1.2  Score=35.96  Aligned_cols=31  Identities=29%  Similarity=0.369  Sum_probs=27.4

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +.|||+|.-|..+|..|.+ .+.+|.++++.+
T Consensus         3 i~iiG~G~~G~~~a~~l~~-~g~~V~~~~~~~   33 (279)
T 2f1k_A            3 IGVVGLGLIGASLAGDLRR-RGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEECCSHHHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             EEEEcCcHHHHHHHHHHHH-CCCEEEEEECCH
Confidence            6899999999999999997 688999987653

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=84.34  E-value=1.3  Score=37.42  Aligned_cols=34  Identities=18%  Similarity=0.309  Sum_probs=29.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~   77 (197)
                      -.+.|||+|..|..+|..|++ .+. +|.|+|.-..
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~-~g~~~V~L~D~~~~   44 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCAL-RELADVVLYDVVKG   44 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-HTCCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCCCeEEEEECChh
Confidence            469999999999999999997 476 8999988653

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=84.15  E-value=1.2  Score=36.98  Aligned_cols=34  Identities=12%  Similarity=0.271  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -.+.|||.|.-|..+|..|++ .|.+|.+.++-+.
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~-~G~~V~~~dr~~~   55 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLK-NGFKVTVWNRTLS   55 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSGG
T ss_pred             CEEEEECccHHHHHHHHHHHH-CCCeEEEEeCCHH
Confidence            469999999999999999997 7999999987654

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=84.14  E-value=1.2  Score=36.73  Aligned_cols=33  Identities=21%  Similarity=0.175  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      -.+.|||.|.-|..+|..|++ .|.+|.+.++.+
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~-~G~~V~~~dr~~   40 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLR-AGLSTWGADLNP   40 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHH-CCCeEEEEECCH
Confidence            358999999999999999997 799999998754

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=83.61  E-value=0.82  Score=38.91  Aligned_cols=33  Identities=12%  Similarity=0.145  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHhhCC-------CeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRS-------WNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g-------~~VLvLEaG~~   77 (197)
                      .+.|||+|.-|+.+|..|++ .|       .+|.++++.+.
T Consensus        23 kI~iIGaG~mG~alA~~L~~-~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           23 KISILGSGNWASAISKVVGT-NAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-HHHHCTTBCSCEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHH-cCCccCCCCCeEEEEECChh
Confidence            48999999999999999997 57       89999987654

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=83.55  E-value=0.98  Score=37.83  Aligned_cols=31  Identities=29%  Similarity=0.454  Sum_probs=27.4

Q ss_pred             EEEECCChHHHHHHHHHHhhCCC--eEEEEecCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSW--NILLVEAGG   76 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~--~VLvLEaG~   76 (197)
                      +.|||+|..|..+|..|++ .+.  .|.+++...
T Consensus         3 I~VIGaG~~G~~la~~l~~-~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            3 IGIVGLGRVGSSTAFALLM-KGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEECCSHHHHHHHHHHHH-HTCCSEEEEECSSH
T ss_pred             EEEECCCHHHHHHHHHHHh-CCCCCeEEEEeCCh
Confidence            7899999999999999997 577  899998754

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=83.53  E-value=1.2  Score=37.43  Aligned_cols=33  Identities=18%  Similarity=0.573  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~   77 (197)
                      .+.|||+|..|..+|..|++ .+. +|.|+|.-..
T Consensus         6 kI~VIGaG~vG~~ia~~la~-~g~~~v~L~Di~~~   39 (322)
T 1t2d_A            6 KIVLVGSGMIGGVMATLIVQ-KNLGDVVLFDIVKN   39 (322)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCCEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCCeEEEEeCCHH
Confidence            58999999999999999997 576 8999987543

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=83.51  E-value=1.2  Score=39.94  Aligned_cols=33  Identities=18%  Similarity=0.295  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhC-CC-eEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVR-SW-NILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~-g~-~VLvLEaG~~   77 (197)
                      .+.|||.|.-|+.+|..|++ . |. +|.+++..+.
T Consensus        20 kIaVIGlG~mG~~lA~~la~-~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           20 KIGVLGMGYVGIPAAVLFAD-APCFEKVLGFQRNSK   54 (478)
T ss_dssp             EEEEECCSTTHHHHHHHHHH-STTCCEEEEECCCCT
T ss_pred             EEEEECcCHHHHHHHHHHHH-hCCCCeEEEEECChh
Confidence            58999999999999999998 6 89 9999998876

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=83.31  E-value=1.3  Score=36.59  Aligned_cols=34  Identities=18%  Similarity=0.218  Sum_probs=29.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -.+.|||.|.-|..+|..|++ .|.+|.++++.+.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~-~g~~V~~~~~~~~   64 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLK-MGHTVTVWNRTAE   64 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHH-TTCCEEEECSSGG
T ss_pred             CeEEEEcccHHHHHHHHHHHh-CCCEEEEEeCCHH
Confidence            359999999999999999997 6899999987543

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=83.22  E-value=1.4  Score=35.92  Aligned_cols=31  Identities=16%  Similarity=0.253  Sum_probs=27.5

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      -++|+|+|-.|..+|..|++ .|.+|.+..+-
T Consensus       121 ~vlViGaGg~g~a~a~~L~~-~G~~V~v~~R~  151 (271)
T 1nyt_A          121 RILLIGAGGASRGVLLPLLS-LDCAVTITNRT  151 (271)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSS
T ss_pred             EEEEECCcHHHHHHHHHHHH-cCCEEEEEECC
Confidence            48999999999999999997 68899998665

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=83.16  E-value=1.1  Score=35.73  Aligned_cols=31  Identities=19%  Similarity=0.496  Sum_probs=27.4

Q ss_pred             EEEECCChHHHHHHHHHHhhCC-CeEEEEecCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRS-WNILLVEAGG   76 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g-~~VLvLEaG~   76 (197)
                      +.|||.|.-|..+|..|++ .+ .+|.+.++.+
T Consensus         3 i~iiG~G~mG~~~a~~l~~-~g~~~v~~~~r~~   34 (263)
T 1yqg_A            3 VYFLGGGNMAAAVAGGLVK-QGGYRIYIANRGA   34 (263)
T ss_dssp             EEEECCSHHHHHHHHHHHH-HCSCEEEEECSSH
T ss_pred             EEEECchHHHHHHHHHHHH-CCCCeEEEECCCH
Confidence            6899999999999999997 58 8999998753

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=83.00  E-value=1.2  Score=39.78  Aligned_cols=32  Identities=25%  Similarity=0.452  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      -+.|||+|.-|..+|..|++ .|.+|.+.+.-.
T Consensus         7 kVgVIGaG~MG~~IA~~la~-aG~~V~l~D~~~   38 (483)
T 3mog_A            7 TVAVIGSGTMGAGIAEVAAS-HGHQVLLYDISA   38 (483)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-TTCCEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHH-CCCeEEEEECCH
Confidence            48899999999999999997 799999998654

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=82.87  E-value=1.8  Score=32.88  Aligned_cols=31  Identities=23%  Similarity=0.376  Sum_probs=27.4

Q ss_pred             EEEEC-CChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          45 FIIVG-AGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        45 ~IIVG-sG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ++|+| +|..|..++.+|.+ .|.+|.++.+.+
T Consensus         3 vlVtGatG~iG~~l~~~L~~-~g~~V~~~~R~~   34 (221)
T 3ew7_A            3 IGIIGATGRAGSRILEEAKN-RGHEVTAIVRNA   34 (221)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-TTCEEEEEESCS
T ss_pred             EEEEcCCchhHHHHHHHHHh-CCCEEEEEEcCc
Confidence            78999 59999999999998 689999998764

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=82.76  E-value=0.78  Score=38.40  Aligned_cols=33  Identities=24%  Similarity=0.285  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHhhCC-------CeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRS-------WNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g-------~~VLvLEaG~~   77 (197)
                      .+.|||+|.-|+.+|..|++ .|       .+|.++++.+.
T Consensus        10 kI~iIG~G~mG~~~a~~l~~-~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A           10 KVCIVGSGNWGSAIAKIVGG-NAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-HHHHCTTEEEEEEEECCCCB
T ss_pred             eEEEECCCHHHHHHHHHHHh-cCCcccCCCCeEEEEEcChh
Confidence            58999999999999999997 57       89999987654

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=82.76  E-value=1.1  Score=37.12  Aligned_cols=32  Identities=22%  Similarity=0.414  Sum_probs=27.7

Q ss_pred             cEEEECCChHHHHHHHHHHhhCC--CeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRS--WNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g--~~VLvLEaG~   76 (197)
                      .+.|||+|..|..+|..|++ .+  ..|.+++...
T Consensus         3 kI~VIGaG~~G~~la~~L~~-~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIA-QGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-HTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCCCEEEEEcCCH
Confidence            37899999999999999997 46  6899998754

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=82.46  E-value=1.5  Score=35.66  Aligned_cols=32  Identities=19%  Similarity=0.444  Sum_probs=28.4

Q ss_pred             cEEEECC-ChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGA-GTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGs-G~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+.|||+ |.-|..+|..|++ .|.+|.+.++.+
T Consensus        13 ~I~iIG~tG~mG~~la~~l~~-~g~~V~~~~r~~   45 (286)
T 3c24_A           13 TVAILGAGGKMGARITRKIHD-SAHHLAAIEIAP   45 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-SSSEEEEECCSH
T ss_pred             EEEEECCCCHHHHHHHHHHHh-CCCEEEEEECCH
Confidence            5899999 9999999999997 689999988653

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=82.46  E-value=1.5  Score=35.37  Aligned_cols=31  Identities=26%  Similarity=0.408  Sum_probs=27.0

Q ss_pred             EEEECCChHHHHHHHHHHhhCCC--eEEEEecCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSW--NILLVEAGG   76 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~--~VLvLEaG~   76 (197)
                      +.|||.|.-|..+|..|++ .|.  +|.+.++.+
T Consensus         4 I~iIG~G~mG~~~a~~l~~-~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            4 VLIVGVGFMGGSFAKSLRR-SGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEESCSHHHHHHHHHHHH-TTCCSEEEEECSCH
T ss_pred             EEEEecCHHHHHHHHHHHh-cCCCcEEEEEeCCH
Confidence            7899999999999999997 677  899987653

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=82.32  E-value=1.2  Score=39.01  Aligned_cols=34  Identities=24%  Similarity=0.451  Sum_probs=29.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGG   76 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~   76 (197)
                      .-.++|+|+|.+|..+|..|.. .|. +|.++|+-+
T Consensus       188 d~kVVi~GAGaAG~~iA~ll~~-~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          188 EVSIVVNGGGSAGLSITRKLLA-AGATKVTVVDKFG  222 (398)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHH-HTCCEEEEEETTE
T ss_pred             ccEEEEECCCHHHHHHHHHHHH-cCCCeEEEEECCC
Confidence            5678999999999999999986 577 999999875

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=82.15  E-value=1.4  Score=35.15  Aligned_cols=33  Identities=24%  Similarity=0.503  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -++|.|+|.-|..++.+|.+ .|.+|.++.+...
T Consensus         7 ~ilVtGaG~iG~~l~~~L~~-~g~~V~~~~r~~~   39 (286)
T 3ius_A            7 TLLSFGHGYTARVLSRALAP-QGWRIIGTSRNPD   39 (286)
T ss_dssp             EEEEETCCHHHHHHHHHHGG-GTCEEEEEESCGG
T ss_pred             cEEEECCcHHHHHHHHHHHH-CCCEEEEEEcChh
Confidence            48999999999999999997 5899999987643

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=82.13  E-value=1.8  Score=38.80  Aligned_cols=38  Identities=24%  Similarity=0.348  Sum_probs=31.1

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCC---eEEEEecCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSW---NILLVEAGG   76 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~---~VLvLEaG~   76 (197)
                      ..-.-.++|||+|..|.++|..|+++.+.   .|++++.-.
T Consensus        10 ~~~~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~   50 (480)
T 2ph5_A           10 ILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEG   50 (480)
T ss_dssp             BCCCSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSC
T ss_pred             ecCCCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccch
Confidence            33456799999999999999999997665   799998643

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=82.11  E-value=1.4  Score=35.88  Aligned_cols=32  Identities=13%  Similarity=0.360  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+.|||.|..|..+|..|++ .+.+|.+.++.+
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~-~g~~V~~~~~~~   38 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLK-AGYSLVVSDRNP   38 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             eEEEECchHHHHHHHHHHHh-CCCEEEEEeCCH
Confidence            58999999999999999997 689999997753

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=82.08  E-value=1.4  Score=36.80  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=29.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      -.+.|||.|.-|..+|..|++ .|.+|.+.++.+
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~-~G~~V~~~dr~~   64 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCE-AGYALQVWNRTP   64 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHh-CCCeEEEEcCCH
Confidence            369999999999999999997 799999998764

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=82.08  E-value=1.2  Score=39.28  Aligned_cols=33  Identities=24%  Similarity=0.302  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhh---CCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEV---RSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~---~g~~VLvLEaG~   76 (197)
                      .++|||+|..|+-+|..|++.   .+.+|.++++..
T Consensus       182 ~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~  217 (493)
T 1m6i_A          182 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEK  217 (493)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCc
Confidence            589999999999999999862   368899999874

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=82.06  E-value=1.3  Score=36.45  Aligned_cols=35  Identities=17%  Similarity=0.333  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.+.|||.|.-|..+|.+|++ .|.+|.+.++.+..
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~-~G~~V~~~dr~~~~   50 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTE-WPGGVTVYDIRIEA   50 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTT-STTCEEEECSSTTT
T ss_pred             CeEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCHHH
Confidence            468999999999999999997 79999999887653

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=81.97  E-value=1.3  Score=41.44  Aligned_cols=32  Identities=19%  Similarity=0.225  Sum_probs=29.7

Q ss_pred             cEEEEC--CChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVG--AGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVG--sG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .++|||  +|..|+-+|..|++ .+.+|.|+|+++
T Consensus       530 ~VvVIG~GgG~~g~e~A~~l~~-~G~~Vtlv~~~~  563 (729)
T 1o94_A          530 RVVILNADTYFMAPSLAEKLAT-AGHEVTIVSGVH  563 (729)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHH-TTCEEEEEESSC
T ss_pred             eEEEEcCCCCchHHHHHHHHHH-cCCEEEEEeccc
Confidence            699998  99999999999998 699999999987

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=81.94  E-value=1.3  Score=38.73  Aligned_cols=33  Identities=24%  Similarity=0.389  Sum_probs=29.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCC-eEEEEecC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAG   75 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG   75 (197)
                      .-.++|+|+|.+|..+|..|.. .|. +|.|+++-
T Consensus       192 ~~kVVv~GAGaAG~~iAkll~~-~G~~~I~v~Dr~  225 (388)
T 1vl6_A          192 EVKVVVNGIGAAGYNIVKFLLD-LGVKNVVAVDRK  225 (388)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH-HTCCEEEEEETT
T ss_pred             CcEEEEECCCHHHHHHHHHHHh-CCCCeEEEEECC
Confidence            5679999999999999999987 466 89999987

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=81.77  E-value=1.8  Score=38.30  Aligned_cols=36  Identities=11%  Similarity=0.322  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ...+-|||.|.-|+.+|..|++ .|.+|.+.+.-+..
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~-~G~~V~~~D~~~~k   43 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSD-FGHEVVCVDKDARK   43 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCSTT
T ss_pred             ceEEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCHHH
Confidence            5678999999999999999998 79999999987654

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=81.77  E-value=1.5  Score=35.59  Aligned_cols=31  Identities=16%  Similarity=0.367  Sum_probs=27.8

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +.|||.|.-|..+|..|++ .|.+|.+.++.+
T Consensus         3 i~iiG~G~mG~~~a~~l~~-~g~~V~~~~~~~   33 (296)
T 2gf2_A            3 VGFIGLGNMGNPMAKNLMK-HGYPLIIYDVFP   33 (296)
T ss_dssp             EEEECCSTTHHHHHHHHHH-TTCCEEEECSST
T ss_pred             EEEEeccHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence            7899999999999999997 689999998754

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=81.74  E-value=1.9  Score=32.93  Aligned_cols=31  Identities=29%  Similarity=0.478  Sum_probs=27.4

Q ss_pred             EEEECC-ChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          45 FIIVGA-GTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        45 ~IIVGs-G~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ++|.|+ |.-|..++.+|.+ .|.+|.++.+..
T Consensus         3 ilVtGatG~iG~~l~~~L~~-~g~~V~~~~R~~   34 (224)
T 3h2s_A            3 IAVLGATGRAGSAIVAEARR-RGHEVLAVVRDP   34 (224)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-TTCEEEEEESCH
T ss_pred             EEEEcCCCHHHHHHHHHHHH-CCCEEEEEEecc
Confidence            789997 9999999999998 699999997754

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=81.63  E-value=1.6  Score=36.44  Aligned_cols=32  Identities=19%  Similarity=0.227  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHhhCC-CeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRS-WNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g-~~VLvLEaG~   76 (197)
                      .+.|||.|.-|..+|..|++ .| .+|.+.++.+
T Consensus        26 ~IgvIG~G~mG~~lA~~L~~-~G~~~V~~~dr~~   58 (317)
T 4ezb_A           26 TIAFIGFGEAAQSIAGGLGG-RNAARLAAYDLRF   58 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHT-TTCSEEEEECGGG
T ss_pred             eEEEECccHHHHHHHHHHHH-cCCCeEEEEeCCC
Confidence            48999999999999999997 78 9999998875

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=81.45  E-value=2  Score=32.18  Aligned_cols=32  Identities=16%  Similarity=0.353  Sum_probs=27.9

Q ss_pred             EEEECC-ChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          45 FIIVGA-GTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        45 ~IIVGs-G~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ++|+|+ |.-|..++.+|.+ .|.+|.++.+...
T Consensus         6 ilVtGatG~iG~~l~~~l~~-~g~~V~~~~r~~~   38 (206)
T 1hdo_A            6 IAIFGATGQTGLTTLAQAVQ-AGYEVTVLVRDSS   38 (206)
T ss_dssp             EEEESTTSHHHHHHHHHHHH-TTCEEEEEESCGG
T ss_pred             EEEEcCCcHHHHHHHHHHHH-CCCeEEEEEeChh
Confidence            789997 9999999999998 6899999987643

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=81.15  E-value=1.8  Score=36.87  Aligned_cols=33  Identities=18%  Similarity=0.289  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      --++|+|+|..|..+|..|.. .|.+|.++++..
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~-~Ga~V~~~d~~~  199 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALG-MGAQVTILDVNH  199 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCCEEEEEECCH
Confidence            358999999999999999987 689999998754

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=81.13  E-value=1.8  Score=36.25  Aligned_cols=33  Identities=24%  Similarity=0.379  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCC--eEEEEecCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSW--NILLVEAGG   76 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~--~VLvLEaG~   76 (197)
                      -.+.|||.|.-|..+|..|.+ .|.  +|.+.++.+
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~-~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRR-SGFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHH-TTCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHh-CCCCCEEEEEECCH
Confidence            358999999999999999997 687  899988754

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=81.06  E-value=1.8  Score=36.46  Aligned_cols=31  Identities=29%  Similarity=0.509  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCC-eEEEEecC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSW-NILLVEAG   75 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG   75 (197)
                      .+.|||+|..|..+|..|++ .+. .|.++|.-
T Consensus        10 kv~ViGaG~vG~~ia~~l~~-~g~~~v~l~D~~   41 (315)
T 3tl2_A           10 KVSVIGAGFTGATTAFLLAQ-KELADVVLVDIP   41 (315)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCCeEEEEecc
Confidence            58999999999999999997 688 89999886

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=80.91  E-value=1.6  Score=34.83  Aligned_cols=29  Identities=28%  Similarity=0.355  Sum_probs=26.0

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEA   74 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa   74 (197)
                      +.|||.|.-|..+|..|++ .|.+|.+.++
T Consensus         3 I~iIG~G~mG~~la~~l~~-~g~~V~~~~~   31 (264)
T 1i36_A            3 VGFIGFGEVAQTLASRLRS-RGVEVVTSLE   31 (264)
T ss_dssp             EEEESCSHHHHHHHHHHHH-TTCEEEECCT
T ss_pred             EEEEechHHHHHHHHHHHH-CCCeEEEeCC
Confidence            6799999999999999997 6899988765

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=80.89  E-value=1.2  Score=36.36  Aligned_cols=33  Identities=15%  Similarity=0.355  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .+.|||.|.-|..+|.+|++ .|.+|.+.++.+.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~-~G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVR-AGFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHH-HTCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHH-CCCeEEEEcCCHH
Confidence            37899999999999999998 5899999987654

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=80.66  E-value=0.87  Score=35.82  Aligned_cols=33  Identities=30%  Similarity=0.512  Sum_probs=28.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEE-EecCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILL-VEAGG   76 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLv-LEaG~   76 (197)
                      -.+.|||+|.-|..+|..|++ .+.+|.+ .++.+
T Consensus        24 mkI~IIG~G~mG~~la~~l~~-~g~~V~~v~~r~~   57 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTA-AQIPAIIANSRGP   57 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHH-TTCCEEEECTTCG
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCCEEEEEECCCH
Confidence            368999999999999999997 6888888 66654

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=80.60  E-value=1.9  Score=36.00  Aligned_cols=32  Identities=34%  Similarity=0.501  Sum_probs=27.5

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCC-eEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSW-NILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~   76 (197)
                      .+.|||+|..|..+|..|++ .+. +|.++|.-.
T Consensus         4 kI~VIGaG~vG~~~a~~la~-~g~~~v~L~Di~~   36 (309)
T 1ur5_A            4 KISIIGAGFVGSTTAHWLAA-KELGDIVLLDIVE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHH-CCCCeEEEEeCCc
Confidence            48899999999999999997 565 899998754

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=80.45  E-value=2.1  Score=35.19  Aligned_cols=32  Identities=16%  Similarity=0.280  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      -+.|||.|..|..+|.+|.. .|.+|++.++-.
T Consensus       157 ~v~IiG~G~iG~~~a~~l~~-~G~~V~~~dr~~  188 (293)
T 3d4o_A          157 NVAVLGLGRVGMSVARKFAA-LGAKVKVGARES  188 (293)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEEESSH
T ss_pred             EEEEEeeCHHHHHHHHHHHh-CCCEEEEEECCH
Confidence            58999999999999999986 689999998754

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=80.43  E-value=1.7  Score=35.29  Aligned_cols=32  Identities=16%  Similarity=0.238  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+.|||.|..|..+|..|++ .+.+|.+.++.+
T Consensus         6 ~i~iiG~G~~G~~~a~~l~~-~g~~V~~~~~~~   37 (301)
T 3cky_A            6 KIGFIGLGAMGKPMAINLLK-EGVTVYAFDLME   37 (301)
T ss_dssp             EEEEECCCTTHHHHHHHHHH-TTCEEEEECSSH
T ss_pred             EEEEECccHHHHHHHHHHHH-CCCeEEEEeCCH
Confidence            58899999999999999997 689999987753

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=80.36  E-value=2.1  Score=37.62  Aligned_cols=34  Identities=6%  Similarity=0.075  Sum_probs=29.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~   77 (197)
                      -.++|||+|..|.-+|..+.+ .|. +|.++++...
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r-~Ga~~Vtiv~r~~~  299 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIR-QGATSVKCLYRRDR  299 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHH-TTCSEEEEECSSCS
T ss_pred             CEEEEECCChhHHHHHHHHHH-cCCCEEEEEEeCCc
Confidence            369999999999999999887 465 6999998865

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=80.35  E-value=2.2  Score=37.44  Aligned_cols=34  Identities=15%  Similarity=0.150  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -.++|||+|..|..+|..+.. .|.+|.+.+.-+.
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~-lGa~V~v~D~~~~  224 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARR-LGAVVSATDVRPA  224 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSTT
T ss_pred             CEEEEECCcHHHHHHHHHHHH-CCCEEEEEcCCHH
Confidence            469999999999999999886 7999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	197
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	3e-29
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	4e-26
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	7e-24
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	3e-23
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	8e-21
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	6e-17
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	4e-16
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	2e-05
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	2e-05
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	3e-05
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	3e-05
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	3e-05
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	5e-05
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	7e-05
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	8e-05
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	1e-04
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	1e-04
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	1e-04
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	2e-04
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	2e-04
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	3e-04
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	4e-04
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	4e-04
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	4e-04
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	4e-04
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	5e-04
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	5e-04
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	6e-04
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	6e-04
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	7e-04
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	7e-04
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	9e-04
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	0.001
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	0.001
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	0.001
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	0.002
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	0.002
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	0.003
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	0.003
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	0.003
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	0.003
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	0.003

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score =  109 bits (273), Expect = 3e-29
 Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 23/173 (13%)

Query: 35  DPDQWP-QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYF---PENRGQ 90
           DP +   + +D+II G G  G  +A++L E     +L++E G   SN       P   GQ
Sbjct: 16  DPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQ 75

Query: 91  LYGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW--- 147
           ++G+++D  ++T         ++N+   I  GKGLGGS+ I+   +TR D    D W   
Sbjct: 76  IFGTTVDQNYLTVPL------INNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKV 129

Query: 148 -GYDAFKFDNVLKYFKKSE---------FMTDSSKYNEFHGTQGPFVVKPSPR 190
            G + + +DN+ +Y KK+E              S     HGT G         
Sbjct: 130 FGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDN 182

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score =  101 bits (251), Expect = 4e-26
 Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 13/144 (9%)

Query: 34  QDPDQWP-QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYF---PENRG 89
            DP     +  D+II G G  G   A+RL E  + ++L++E+G   S+           G
Sbjct: 8   TDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYG 67

Query: 90  QLYGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW-- 147
            ++GSS+D A+ T E      + +NQ   I  G GLGGS+ ++   +TR      D W  
Sbjct: 68  DIFGSSVDHAYETVEL-----ATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWET 122

Query: 148 --GYDAFKFDNVLKYFKKSEFMTD 169
             G + + +DNV  Y  ++E    
Sbjct: 123 VFGNEGWNWDNVAAYSLQAERARA 146

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 94.7 bits (234), Expect = 7e-24
 Identities = 21/163 (12%), Positives = 45/163 (27%), Gaps = 16/163 (9%)

Query: 41  QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAF 100
            ++D +IVG+G  G   A  L     + + + + G   S +      +  +        F
Sbjct: 3   IKYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKF 61

Query: 101 VTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEW------------- 147
           V   Q    L   +          L  +S   S ++ R  S    +              
Sbjct: 62  VNVIQGQ--LMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVV 119

Query: 148 GYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVKPSPR 190
           G  +  +      F + +         +    +   +   +  
Sbjct: 120 GGMSTHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAES 162

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score = 92.6 bits (229), Expect = 3e-23
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 25  NTTSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYF 84
           +  S  +   D +     +D++IVG GT+G  LA+ L+E   + +L++E G  P+     
Sbjct: 10  SYLSFAYDATDLEL-EGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNV 66

Query: 85  PENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDY 144
               G +Y    +    T  +  +    S        G+ LGG+S I++  Y R ++  Y
Sbjct: 67  LTADGFVYNLQQEDDGKTPVERFV----SEDGIDNVRGRVLGGTSIINAGVYARANTSIY 122

Query: 145 DEWGYDAFKFDNVLKYFKKSE 165
              G   +  D V + ++  E
Sbjct: 123 SASG-VDWDMDLVNQTYEWVE 142

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 86.5 bits (213), Expect = 8e-21
 Identities = 20/162 (12%), Positives = 46/162 (28%), Gaps = 20/162 (12%)

Query: 41  QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFP--------------- 85
                +++G+G  G++ A RL +       +VE G                         
Sbjct: 6   DRVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMW 64

Query: 86  ----ENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDS 141
                ++              +   G+  S       +  G+G+GG S ++         
Sbjct: 65  LADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKR 124

Query: 142 RDYDEWGYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPF 183
             ++E        +   KYF ++      +  ++       +
Sbjct: 125 NYFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQAWFESTEW 166

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 75.4 bits (184), Expect = 6e-17
 Identities = 26/157 (16%), Positives = 56/157 (35%), Gaps = 21/157 (13%)

Query: 44  DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD----------------PSNISYFPEN 87
             +++G G   ++ A RL E      L++E G                  P   S + +N
Sbjct: 4   PAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKN 62

Query: 88  RGQLYGSSMDWAFVT----EEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRD 143
           R +    S  W  V     +  +G+   ++  + ++  G+G+GG S ++           
Sbjct: 63  RTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSY 122

Query: 144 YDEWGYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQ 180
           ++E        +   +YF ++  M   +  +      
Sbjct: 123 FEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFED 159

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 73.1 bits (178), Expect = 4e-16
 Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 13/145 (8%)

Query: 42  EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSM----- 96
            +D+IIVGAG  G I A RL+E     +LL+E GG  +  +           S +     
Sbjct: 2   PYDYIIVGAGPGGIIAADRLSE-AGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDI 60

Query: 97  ---DWAFVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDAFK 153
                +  T+     +     +  T+  G  +GG +S++   Y   +  D+         
Sbjct: 61  PGLFESLFTDSNPFWW----CKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSS 116

Query: 154 FDNVLKYFKKSEFMTDSSKYNEFHG 178
           + N   Y  K      S+ +    G
Sbjct: 117 WTNHAPYTSKLSSRLPSTDHPSTDG 141

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
          E D ++VGAG+AG   A  +++  +  + ++E    P
Sbjct: 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP 69

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.8 bits (96), Expect = 2e-05
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLY 92
          +E+D I++G G    IL+  ++      +L ++        S       +LY
Sbjct: 5  EEYDVIVLGTGLTECILSGIMSV-NGKKVLHMDRNPYYGGESSSITPLEELY 55

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 41.6 bits (96), Expect = 3e-05
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 7/64 (10%)

Query: 21 DTTTNTTSVPHTPQDPDQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSN 80
          D +    ++   P D        D ++VG+G AG   A    +     ++L+E       
Sbjct: 1  DKSERQAALASAPHD------TVDVVVVGSGGAGFSAAISATD-SGAKVILIEKEPVIGG 53

Query: 81 ISYF 84
           +  
Sbjct: 54 NAKL 57

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
           +D I++G G +G + A   AE    N+LL++ G   
Sbjct: 2  HYDVIVIGGGPSGLMAAIGAAE-EGANVLLLDKGNKL 37

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 42 EFDFIIVGAGTAGSILASRLAEVRS-----WNILLVEAGGDP 78
          E D +IVGAG AG   A+RL ++ +       + LVE     
Sbjct: 32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI 73

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 5e-05
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75
           ++D I++G G    IL+  L+      +L ++  
Sbjct: 4  TDYDVIVLGTGITECILSGLLSV-DGKKVLHIDKQ 37

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 40.1 bits (92), Expect = 7e-05
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDW 98
          + ++ +++G G  GS +A  LA+  + N  L E+G      +      G L   +   
Sbjct: 3  RHYEAVVIGGGIIGSAIAYYLAK-ENKNTALFESGTMGGRTTSA--AAGMLGAHAECE 57

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 39.7 bits (91), Expect = 8e-05
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEA---GGDPSNISYFP 85
          +D I++G G+ G   A R A   +  + LVE    GG   N+   P
Sbjct: 2  YDLIVIGGGSGGMAAARRAAR-HNAKVALVEKSRLGGTCVNVGCVP 46

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 10/41 (24%), Positives = 17/41 (41%)

Query: 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISY 83
           D +I GAG  G   A  L +     + L+E+  +   +  
Sbjct: 2  IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGV 42

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
            FD I+VGAG+ G     +LA+ +    LLV+A   P
Sbjct: 2  THFDVIVVGAGSMGMAAGYQLAK-QGVKTLLVDAFDPP 38

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 5/72 (6%)

Query: 41  QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA----GGDPSNISYFPENRGQLYGSSM 96
           +  D +I+G G AG + A + A+   +N   VE     GG   N+   P           
Sbjct: 4   KSHDVVIIGGGPAGYVAAIKAAQ-LGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLF 62

Query: 97  DWAFVTEEQSGM 108
                  ++ G+
Sbjct: 63  HQMHTEAQKRGI 74

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
          Q  + II+GAG AG   A++LA+    ++ + + G   
Sbjct: 3  QYSENIIIGAGAAGLFCAAQLAK-LGKSVTVFDNGKKI 39

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYF 84
            +  D +I+G+G AG   A    +     ++L+E    P   +  
Sbjct: 20 VKETTDVVIIGSGGAGLAAAVSARD-AGAKVILLEKEPIPGGNTKL 64

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEA 74
          +D+IIVG+G  G++ A+ L +  +  +L++E 
Sbjct: 2  YDYIIVGSGLFGAVCANELKK-LNKKVLVIEK 32

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 37.9 bits (87), Expect = 4e-04
 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 41  QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEA----GGDPSNISYFPENRGQLYGSSM 96
            E D +I+G G  G + A + A+   +    +E     GG   N+   P           
Sbjct: 2   DENDVVIIGGGPGGYVAAIKAAQ-LGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 60

Query: 97  DWAFVTEEQSG 107
             A  +    G
Sbjct: 61  HEAKHSFANHG 71

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 37.6 bits (86), Expect = 4e-04
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 42  EFDFIIVGAGTAGSILASRLAEVRSWNILLVEA---GGDPSNISYFPENRGQLYGSSMDW 98
            +D+I +G G+ G    +R A        L+EA   GG   N+   P+          + 
Sbjct: 2   HYDYIAIGGGSGGIASINRAAM-YGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREA 60

Query: 99  AFVTEEQSGM 108
             +     G 
Sbjct: 61  IHMYGPDYGF 70

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 38.0 bits (87), Expect = 4e-04
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 39  WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDW 98
             +    ++VGAG+AG   +    +    N++LV+        S          G+    
Sbjct: 16  PSETTQVLVVGAGSAGFNASLAAKK-AGANVILVDKAPFSGGNSMISAGGMNAVGTKQQT 74

Query: 99  AFVTEE 104
           A   E+
Sbjct: 75  AHGVED 80

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 37.6 bits (86), Expect = 4e-04
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD 77
          P+E+D I +G G AG   ++ L        L+V+    
Sbjct: 40 PREYDAIFIGGGAAGRFGSAYLRA-MGGRQLIVDRWPF 76

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.1 bits (85), Expect = 5e-04
 Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 13/149 (8%)

Query: 42  EFDFIIVGAGTAGSILASRLAEVRSWNILLVEA---GGDPSNISYFPENRGQLYGSSMDW 98
           E + ++VGAG  G + A R A+     + +VE    GG   N+   P           + 
Sbjct: 3   ETETLVVGAGPGGYVAAIRAAQ-LGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQ 61

Query: 99  AFVTEEQSGMFLSLSNQRTTIPCG---------KGLGGSSSIHSLYYTRGDSRDYDEWGY 149
           A  +EE      +++     +             G+ G    + +   +G++   D    
Sbjct: 62  AKHSEEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTV 121

Query: 150 DAFKFDNVLKYFKKSEFMTDSSKYNEFHG 178
                D+   Y  K+  +   S+  E  G
Sbjct: 122 RVVNGDSAQTYTFKNAIIATGSRPIELVG 150

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 37.2 bits (85), Expect = 5e-04
 Identities = 7/58 (12%), Positives = 20/58 (34%)

Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDW 98
          + +D +++GAG+ G       A +    + +++         Y       +    +  
Sbjct: 2  RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPK 59

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 37.3 bits (85), Expect = 6e-04
 Identities = 8/58 (13%), Positives = 21/58 (36%)

Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDW 98
          + FD +++GAG+ G   A   A +    + +++         +       +    +  
Sbjct: 2  KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPK 59

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 36.9 bits (84), Expect = 6e-04
 Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 41  QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAF 100
           Q+FD I++GAG  G + A + A+       L+E        +        +         
Sbjct: 2   QKFDVIVIGAGPGGYVAAIKSAQ-LGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALL 60

Query: 101 VTEEQSGMF 109
            +  +    
Sbjct: 61  DSSYKFHEA 69

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 7e-04
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEA---GGDPSNISYFP 85
           +D++++G G+ G   A R AE       +VE+   GG   N+   P
Sbjct: 3  SYDYLVIGGGSGGLASARRAAE-LGARAAVVESHKLGGTCVNVGCVP 48

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 36.9 bits (84), Expect = 7e-04
 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75
          +   +I+G G  G + A R  +      +LVE  
Sbjct: 5  QTTLLIIGGGPGGYVAAIRAGQ-LGIPTVLVEGQ 37

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (84), Expect = 9e-04
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 42 EFDFIIVGAGTAGSILASRLAEVR-SWNILLVEAGGDP 78
            D IIVGAG++G   A  +A+ R    + ++E+   P
Sbjct: 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 87

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG 76
          E+D +++G G  G   A   A+     + +VE   
Sbjct: 6  EYDVVVLGGGPGGYSAAFAAAD-EGLKVAIVERYK 39

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 20/75 (26%)

Query: 41  QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAF 100
           +EFD +++GAG AG   A ++++       L+               +     S    A 
Sbjct: 6   REFDAVVIGAGGAGMRAALQISQ-SGQTCALLS--------------KVFPTRSHTVSA- 49

Query: 101 VTEEQSGMFLSLSNQ 115
               Q G+ ++L N 
Sbjct: 50  ----QGGITVALGNT 60

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 1/39 (2%)

Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
          P      +VG   +G   A  L +    ++ + E    P
Sbjct: 2  PTTDRIAVVGGSISGLTAALMLRD-AGVDVDVYERSPQP 39

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75
             D +I+G+G AG  LA RLA+     ++++  G
Sbjct: 6  HSCDVLIIGSGAAGLSLALRLAD--QHQVIVLSKG 38

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG 75
          Q  D +++G G AG   A    + +  + +++   
Sbjct: 4  QYCDSLVIGGGLAGLRAAVATQQ-KGLSTIVLSLI 37

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 4/43 (9%)

Query: 44 DFIIVGAGTAGSILASRLAE----VRSWNILLVEAGGDPSNIS 82
          D +IVGAG AG + A  L+E         + +++         
Sbjct: 9  DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNG 51

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 40 PQEFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDPS 79
          P    F+++G GTA    A  +        +L+V    +  
Sbjct: 2  PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP 42

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNIS 82
             I+GAG +G +L   L +    + +++E       + 
Sbjct: 4  QVAIIGAGPSGLLLGQLLHK-AGIDNVILERQTPDYVLG 41

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP 78
          P+E D ++VGAG +G     RL E    ++ ++E  GD 
Sbjct: 5  PEEVDVLVVGAGFSGLYALYRLRE-LGRSVHVIETAGDV 42

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPS 79
          +FD II+G G+ G   A   A+     +++++      
Sbjct: 3  DFDLIIIGGGSGGLAAAKEAAK-FDKKVMVLDFVTPTP 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	197
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	100.0
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	100.0
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	99.94
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	99.93
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	99.88
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	99.86
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	99.64
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.08
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.08
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.77
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.72
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.71
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.69
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.69
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.66
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.65
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.65
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.63
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.62
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.61
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.59
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.58
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.58
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.57
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.57
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.55
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.55
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.55
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.54
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.53
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.51
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.49
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.44
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.41
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.41
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.41
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.4
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.4
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.38
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.35
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.34
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.31
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.3
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.3
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.26
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.26
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.25
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.21
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.2
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.17
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.16
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.14
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.09
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.09
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.07
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.05
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.95
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.88
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.81
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.63
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.62
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.51
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.4
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	97.38
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.33
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.27
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.22
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.2
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.1
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.1
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.01
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.94
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.93
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.92
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.91
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.83
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.67
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.59
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.58
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.58
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.49
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	96.38
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.14
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.13
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.09
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.09
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.05
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.02
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.99
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.92
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.88
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	95.77
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	95.7
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.69
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	94.45
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	94.08
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	93.81
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	93.06
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	93.04
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	92.77
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	92.44
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	92.16
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	91.86
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	91.85
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	91.81
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	91.3
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	90.58
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	90.47
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	90.36
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	88.32
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	86.88
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	86.77
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	86.21
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	85.92
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	85.84
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	85.8
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	85.26
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	84.5
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	84.27
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	84.05
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	83.79
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	83.69
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	83.69
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	83.32
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	82.51
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	82.12
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	81.98
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	81.23
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	81.1
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	81.07
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	80.79
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	80.71
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	80.56

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=100.00  E-value=4.6e-34  Score=249.56  Aligned_cols=145  Identities=32%  Similarity=0.555  Sum_probs=125.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCC---CcccCCccccCccCCCCcccccccccccccccCCCCcc
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPS---NISYFPENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRT  117 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~---~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~  117 (197)
                      ++|||||||||++||++|.||+|+++.+|||||+|+...   ....+|..+....++.++|+|.++|+.      +++.+
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~~------~~r~~   96 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVPLI------NNRTN   96 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCCCT------TSCCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCCCCCCceeeCHHHHHHhhCCCcccCceeeecC------CCcEe
Confidence            589999999999999999999996558999999998653   234567666666778899999998874      67889


Q ss_pred             ccccccccCCCccccccccccCChhhHhhh----CCCCCCHhhHHHHHHHHhhhcCCC---------CCCCCCCCCCCEE
Q psy6708         118 TIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKFDNVLKYFKKSEFMTDSS---------KYNEFHGTQGPFV  184 (197)
Q Consensus       118 ~~~~g~~vGG~S~in~~~~~R~~~~df~~w----g~~~W~~d~l~pyy~~~E~~~~~~---------~~~~~hG~~Gpl~  184 (197)
                      .+++|++|||+|+||+|+|+|+++.||+.|    |+++|+|++++|||+|+|++.++.         .+...||..||++
T Consensus        97 ~~~~G~~lGGsS~in~~~~~rg~~~d~~~w~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~~~~~~~~~~g~~~~~~  176 (391)
T d1gpea1          97 NIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQ  176 (391)
T ss_dssp             EECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCCBSSSEE
T ss_pred             eeceeeccCcccceeeeEEeeccccccccccccCCCCccccchhHHHHHHhhhccCCcchhcccccCccccccCCCCccc
Confidence            999999999999999999999999999999    788999999999999999987653         2467899999999


Q ss_pred             eecCCCC
Q psy6708         185 VKPSPRV  191 (197)
Q Consensus       185 vs~~~~~  191 (197)
                      +++.+..
T Consensus       177 ~~~~~~~  183 (391)
T d1gpea1         177 SGARDNG  183 (391)
T ss_dssp             EBCCCCS
T ss_pred             ccccccc
Confidence            9886543

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=100.00  E-value=2.8e-33  Score=243.57  Aligned_cols=145  Identities=32%  Similarity=0.510  Sum_probs=123.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCC---CcccCCccccCccCCCCcccccccccccccccCCCCcc
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPS---NISYFPENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRT  117 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~---~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~  117 (197)
                      ++|||||||||+|||++|.||+|+++.+|||||+|+...   +....|..+.....+.++|.|.+.++.     ++++.+
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~dw~~~t~~~~-----~~~r~~   90 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELA-----TNNQTA   90 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCCT-----TTSCCC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCCCCCCCccccCHhHHhhhcCCCCCcCccccCcC-----CCCcee
Confidence            579999999999999999999997678999999998643   233445555555677899999887654     578899


Q ss_pred             ccccccccCCCccccccccccCChhhHhhh----CCCCCCHhhHHHHHHHHhhhcCCC---------CCCCCCCCCCCEE
Q psy6708         118 TIPCGKGLGGSSSIHSLYYTRGDSRDYDEW----GYDAFKFDNVLKYFKKSEFMTDSS---------KYNEFHGTQGPFV  184 (197)
Q Consensus       118 ~~~~g~~vGG~S~in~~~~~R~~~~df~~w----g~~~W~~d~l~pyy~~~E~~~~~~---------~~~~~hG~~Gpl~  184 (197)
                      .+++|++|||||.||+|+|+|+.+.|||.|    +.++|+|++++|||+|+|++..+.         .+...||..||++
T Consensus        91 ~~~~G~~lGGsS~in~~~~~R~~~~d~d~w~~~~~~~gw~~~~l~Pyf~k~E~~~~~~~~~~~~~~~~~~~~~g~~~~~~  170 (385)
T d1cf3a1          91 LIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVH  170 (385)
T ss_dssp             EECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSCSSSSEE
T ss_pred             eecccccccccceeeeeeeeccChhhhcccccccCCCcCchhhhHHHHHHHHhhcCCCcccccccccccccccCCccccc
Confidence            999999999999999999999999999999    678999999999999999987664         2356799999999


Q ss_pred             eecCCC
Q psy6708         185 VKPSPR  190 (197)
Q Consensus       185 vs~~~~  190 (197)
                      ++....
T Consensus       171 ~~~~~~  176 (385)
T d1cf3a1         171 AGPRDT  176 (385)
T ss_dssp             EBCCCC
T ss_pred             cccccc
Confidence            987643

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.94  E-value=8.5e-28  Score=207.10  Aligned_cols=137  Identities=25%  Similarity=0.310  Sum_probs=103.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCCCcc---cCCcccc--CccC---CCCcccccccccccccccCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNIS---YFPENRG--QLYG---SSMDWAFVTEEQSGMFLSLS  113 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~~~~---~~p~~~~--~~~~---~~~~w~~~~~p~~~~~~~~~  113 (197)
                      .|||||||||+|||++|.||+| ++++|||||+|+......   ....+..  ....   ....|.+.+.+++.    ..
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae-~g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~   76 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSE-AGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNPF----WW   76 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCCT----TB
T ss_pred             cCCEEEECcCHHHHHHHHHHhh-CCCeEEEEEccCCCCcccccccccchhhccCcccccCcccccccccCCCcc----cC
Confidence            6999999999999999999998 699999999997643211   1111110  0111   12345556666654    46


Q ss_pred             CCccccccccccCCCccccccccccCChhhHhhhCCCCCCHhhHHHHHHHHhhhcCCCCCCCCCCCCCCEEee
Q psy6708         114 NQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDAFKFDNVLKYFKKSEFMTDSSKYNEFHGTQGPFVVK  186 (197)
Q Consensus       114 ~~~~~~~~g~~vGG~S~in~~~~~R~~~~df~~wg~~~W~~d~l~pyy~~~E~~~~~~~~~~~hG~~Gpl~vs  186 (197)
                      ++.+.+++|++|||+|+||+|+++|+.+.||+.|-.-.|+|++++|||+|+|++++.   ..+|+..|++.+.
T Consensus        77 ~~~~~~~~G~~lGGsS~in~~~~~r~~~~D~~~~~gwp~~~~~l~py~~~~e~~~~~---~~~~~~~g~~~~~  146 (360)
T d1kdga1          77 CKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHAPYTSKLSSRLPS---TDHPSTDGQRYLE  146 (360)
T ss_dssp             CTTBSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTCCGGGSCCHHHHHHHHHHSCC---BSCCSTTSCCCSC
T ss_pred             Cccccccceeeecchhccccccccccchhhheecccccccccchhhhhhhhhccccc---cceecCCCccccc
Confidence            788999999999999999999999999999998821124899999999999999865   3567777777553

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=99.93  E-value=2.4e-27  Score=203.94  Aligned_cols=126  Identities=25%  Similarity=0.361  Sum_probs=95.4

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCCCcccCCccccCccCCCCcccccccccccccccCCCCcc
Q psy6708          38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQLYGSSMDWAFVTEEQSGMFLSLSNQRT  117 (197)
Q Consensus        38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~  117 (197)
                      +.+++|||||||||+|||++|.|||| . .+|||||+|+.......++............|.+.+.+++.    +.++.+
T Consensus        22 ~~~~~YD~IIVGsG~aG~vlA~rLae-~-~kVLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~   95 (351)
T d1ju2a1          22 ELEGSYDYVIVGGGTSGCPLAATLSE-K-YKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERF----VSEDGI   95 (351)
T ss_dssp             CSEEEEEEEEECCSTTHHHHHHHHTT-T-SCEEEECSSBCGGGSGGGGBGGGHHHHHHSCCCSSSSEEEE----ECTTSC
T ss_pred             cccCCccEEEECccHHHHHHHHHhcC-C-CCEEEEecCCCCcCccccccchhhhccCcCCCCCCCccccc----cCCCce
Confidence            45568999999999999999999998 3 89999999986322111111000001112334444555543    466789


Q ss_pred             ccccccccCCCccccccccccCChhhHhhhCCCCCCHhhHHHHHHHHhhhcCC
Q psy6708         118 TIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDAFKFDNVLKYFKKSEFMTDS  170 (197)
Q Consensus       118 ~~~~g~~vGG~S~in~~~~~R~~~~df~~wg~~~W~~d~l~pyy~~~E~~~~~  170 (197)
                      .+++|++|||+|+||+|+++|+.+.||+.|. .+|+|++++|||+++|+....
T Consensus        96 ~~~rG~~lGGsS~in~~~~~R~~~~dfd~~~-~~W~~~~~~p~~~~~e~~~~~  147 (351)
T d1ju2a1          96 DNVRGRVLGGTSIINAGVYARANTSIYSASG-VDWDMDLVNQTYEWVEDTIVY  147 (351)
T ss_dssp             EEEEECBTTGGGGTSCCEECBCCTTSSTTSS-SCCCHHHHHHHHHHHHHHHCB
T ss_pred             eeeeeeecccccccceeeeccCCHHHHhhcc-cccChhHhCcceeeccccccc
Confidence            9999999999999999999999999999995 589999999999999987643

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=99.88  E-value=3.7e-23  Score=176.57  Aligned_cols=132  Identities=15%  Similarity=0.112  Sum_probs=94.7

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCCCcccCCccccCc-------------------cCCCCccc
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISYFPENRGQL-------------------YGSSMDWA   99 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~~~~~~p~~~~~~-------------------~~~~~~w~   99 (197)
                      ..++||+||||||++|+++|.||+| +|++|||||+|.+.......+......                   ....+.|.
T Consensus         4 ~~~~~dvIVVGsG~aG~v~A~rLae-aG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (370)
T d3coxa1           4 DGDRVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGIN   82 (370)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCCSCSCCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBSCC
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCCCCCCcccccccccccccccccccccccccccccccccccccC
Confidence            4478999999999999999999998 799999999997642111110000000                   00122344


Q ss_pred             ccccccccccccCCCCccccccccccCCCccccccccccCChhhHhhhCCCCCCHhhHHHHHHHHhhhcCCC
Q psy6708         100 FVTEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDAFKFDNVLKYFKKSEFMTDSS  171 (197)
Q Consensus       100 ~~~~p~~~~~~~~~~~~~~~~~g~~vGG~S~in~~~~~R~~~~df~~wg~~~W~~d~l~pyy~~~E~~~~~~  171 (197)
                      +...+..........+.+.+.++++|||+|.+|++++.|+.+.||+.|....+.+++++|||+++|+.+...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~g~~vGG~S~~~~~~~~r~~~~df~~~~~~~~~~~~~~~~y~~~e~~lgv~  154 (370)
T d3coxa1          83 KSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPSVDSNEMYNKYFPRANTGLGVN  154 (370)
T ss_dssp             CBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCB
T ss_pred             cccccccccccccCCCcceeeeeccccccccccCceeccCCHHHhhcccccCCcHHHHHHHHHHHHHhcCCc
Confidence            433333333333455778889999999999999999999999999999433345788999999999998654

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=99.86  E-value=3.2e-22  Score=170.31  Aligned_cols=129  Identities=17%  Similarity=0.213  Sum_probs=88.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCCCccc-CCccccCcc-CCCCcccc--ccc--------------
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNISY-FPENRGQLY-GSSMDWAF--VTE--------------  103 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~~~~~-~p~~~~~~~-~~~~~w~~--~~~--------------  103 (197)
                      -+|+||||||++|+++|.||+| +|++|||||+|.+...... .+.+..... .....|..  ...              
T Consensus         2 ~v~VIVVGsG~aG~v~A~rLae-aG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (367)
T d1n4wa1           2 YVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRN   80 (367)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCCB
T ss_pred             cCeEEEeCcCHHHHHHHHHHHH-CcCeEEEEecCCCCCCccccccccccccccccccccccccccccccccccccCCCcc
Confidence            3799999999999999999998 7999999999976432111 111110000 01111111  000              


Q ss_pred             --ccccccccCCCCccccccccccCCCccccccccccCChhhHhhhCCCCCCHhhHHHHHHHHhhhcCCC
Q psy6708         104 --EQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGYDAFKFDNVLKYFKKSEFMTDSS  171 (197)
Q Consensus       104 --p~~~~~~~~~~~~~~~~~g~~vGG~S~in~~~~~R~~~~df~~wg~~~W~~d~l~pyy~~~E~~~~~~  171 (197)
                        +..........+.+.++++++|||+|.+|++++.|+.+.||+.|....|.+++|.|||+++|+++.+.
T Consensus        81 ~~~~~g~~~~~~~~~~~~~~g~~lGG~S~i~~~~~~r~~~~~f~~~~~~~~~~~~l~pyy~~ae~~l~~~  150 (367)
T d1n4wa1          81 IDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPRVDSSEMYDRYFPRANSMLRVN  150 (367)
T ss_dssp             CCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCB
T ss_pred             cccccCccccccCCccceeeEEecCCCCceecceeeccChhHhhccccccCcHHHHHHHHHHHHHHhCCC
Confidence              01110111234567888999999999999999999999999999433445899999999999998664

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=99.64  E-value=1e-17  Score=140.73  Aligned_cols=127  Identities=15%  Similarity=0.212  Sum_probs=77.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCCCc--ccCCccccCcc------------------CC------
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPSNI--SYFPENRGQLY------------------GS------   94 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~~~--~~~p~~~~~~~------------------~~------   94 (197)
                      .+|||||||||++|+++|.+|++ +|+||||||+|+.....  ...+.......                  ..      
T Consensus         3 ~~yDviIVGsG~aG~v~A~~La~-~G~kVlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (379)
T d2f5va1           3 IKYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLVV   81 (379)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSCCCSSSSTTCCTTCSHHHHHCGGGHHHHHHHTCEESCCCCCCCCC
T ss_pred             CcccEEEECcCHHHHHHHHHHhh-CCCeEEEEecCCCCCCcccccchhhccccccccccccccccccccccccccccccc
Confidence            68999999999999999999998 79999999999865321  11111000000                  00      


Q ss_pred             ----CCccccc-----ccccccccccCCCCccccccccccCCCccccccccccCChhhHhhhCC-------CCC--CHhh
Q psy6708          95 ----SMDWAFV-----TEEQSGMFLSLSNQRTTIPCGKGLGGSSSIHSLYYTRGDSRDYDEWGY-------DAF--KFDN  156 (197)
Q Consensus        95 ----~~~w~~~-----~~p~~~~~~~~~~~~~~~~~g~~vGG~S~in~~~~~R~~~~df~~wg~-------~~W--~~d~  156 (197)
                          ...|...     .......  ........+..++.+||.+.+|.+.+.|+.+.||+.+..       ..|  .|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Gg~~~~~~~~~~r~~~~d~~~~~~~~~~~~~~~~~~~~~~  159 (379)
T d2f5va1          82 DTLSPTSWQASTFFVRNGSNPEQ--DPLRNLSGQAVTRVVGGMSTHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTK  159 (379)
T ss_dssp             CCSCTTSCCCSSCCCCTTCCTTC--CTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGGSCCSSSSCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCccCCCeEeccCCCchh--hhhhccccchhhhcCCCCccccccEeccCCHHHhhhccccCCCccCCcCccchhh
Confidence                0000000     0000000  000111234467899999999999999999999987621       124  5677


Q ss_pred             HHHHHHHHhhhcCC
Q psy6708         157 VLKYFKKSEFMTDS  170 (197)
Q Consensus       157 l~pyy~~~E~~~~~  170 (197)
                      +++||.+.++.+..
T Consensus       160 ~~~~~~~~~~~~~~  173 (379)
T d2f5va1         160 AESYFQTGTDQFKE  173 (379)
T ss_dssp             HHHHHTEESCTTTT
T ss_pred             hhhhhhHHHHHHHH
Confidence            77777776655443

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=4.5e-11  Score=91.58  Aligned_cols=37  Identities=22%  Similarity=0.447  Sum_probs=34.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .+||+||||||.+|+++|.+|++ .|++|+|||+....
T Consensus         4 ~~yDviViGaG~~Gl~~A~~La~-~G~~V~vlE~~~~~   40 (297)
T d2bcgg1           4 TDYDVIVLGTGITECILSGLLSV-DGKKVLHIDKQDHY   40 (297)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH-CCCCEEEEcCCCCC
Confidence            58999999999999999999998 79999999998654

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.77  E-value=4.6e-09  Score=89.85  Aligned_cols=37  Identities=41%  Similarity=0.559  Sum_probs=33.9

Q ss_pred             cccEEEECCChHHHHHHHHHHh-----hCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAE-----VRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae-----~~g~~VLvLEaG~~~   78 (197)
                      +|||||||+|+||+++|.+|++     ..|.+|||||++...
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p   73 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   73 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence            7999999999999999999996     369999999999764

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.72  E-value=4.5e-09  Score=83.10  Aligned_cols=36  Identities=33%  Similarity=0.621  Sum_probs=33.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +||+||||+|++|+++|.+|++ .|.+|+|||++...
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~-~G~~V~liEk~~~~   37 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAE-EGANVLLLDKGNKL   37 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            6999999999999999999998 79999999998754

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.71  E-value=4.2e-09  Score=81.64  Aligned_cols=36  Identities=33%  Similarity=0.517  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ++||+||||+|+||+.+|.++++ .|++|+|||+...
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar-~G~~V~viE~~~~   37 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQ-LGLKTALIEKYKG   37 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH-HTCCEEEEECCBC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH-CCCeEEEEecccC
Confidence            68999999999999999999998 6999999998653

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.69  E-value=5.8e-09  Score=85.26  Aligned_cols=38  Identities=24%  Similarity=0.342  Sum_probs=34.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++||+||||+|++|+++|.+|++ .|.+|+|||+++..
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~-~G~~V~lvEK~~~~   51 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATD-SGAKVILIEKEPVI   51 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence            358999999999999999999998 79999999998754

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.69  E-value=6.2e-09  Score=83.29  Aligned_cols=36  Identities=31%  Similarity=0.530  Sum_probs=33.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ++||+||||+|.+|+++|++|++ .|.+|+|||++..
T Consensus         3 ~~~DvvIIGaGi~Gls~A~~La~-~G~~V~vlE~~~~   38 (276)
T d1ryia1           3 RHYEAVVIGGGIIGSAIAYYLAK-ENKNTALFESGTM   38 (276)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSST
T ss_pred             ccCCEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCCC
Confidence            57999999999999999999998 6999999999753

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.66  E-value=7.8e-09  Score=82.71  Aligned_cols=37  Identities=32%  Similarity=0.435  Sum_probs=34.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +.||+||||+|++|+++|.+|++ .|.+|+|||+++..
T Consensus         3 ~~~DViIIGaG~aGl~aA~~la~-~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           3 QYSENIIIGAGAAGLFCAAQLAK-LGKSVTVFDNGKKI   39 (253)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence            47999999999999999999998 79999999998754

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.65  E-value=8.4e-09  Score=82.95  Aligned_cols=36  Identities=39%  Similarity=0.558  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .+||+||||+|.+|+++|++|++ .|.+|+|||+...
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~-~G~~V~viE~~~~   37 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAK-QGVKTLLVDAFDP   37 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCCC
Confidence            48999999999999999999998 7999999999754

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=9.2e-09  Score=79.99  Aligned_cols=35  Identities=29%  Similarity=0.480  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ++||+||||+|+||+.+|.++++ .|++|+|||++.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~-~G~kV~iiE~~~   35 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAM-YGQKCALIEAKE   35 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHT-TTCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-CCCEEEEEeccC
Confidence            47999999999999999999997 799999999874

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.63  E-value=1.2e-08  Score=79.28  Aligned_cols=36  Identities=28%  Similarity=0.504  Sum_probs=33.3

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ++||+||||+|++|+.+|..+++ .|++|+|||++..
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~-~G~kV~vie~~~~   37 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQ-LGFKTTCIEKRGA   37 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHH-HTCCEEEEECSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-CCCcEEEEEecCC
Confidence            58999999999999999999998 6999999998754

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=1.2e-08  Score=79.58  Aligned_cols=36  Identities=33%  Similarity=0.562  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ++||+||||+|+||+.+|.++++ .|++|+|||+...
T Consensus         4 ~~yDviVIG~GpAGl~aA~~aa~-~G~kV~lie~~~~   39 (233)
T d1v59a1           4 KSHDVVIIGGGPAGYVAAIKAAQ-LGFNTACVEKRGK   39 (233)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSSS
T ss_pred             cccCEEEECCCHHHHHHHHHHHH-CCCcEEEEEecCC
Confidence            68999999999999999999998 7999999998754

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.61  E-value=1.4e-08  Score=83.69  Aligned_cols=40  Identities=25%  Similarity=0.366  Sum_probs=36.1

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..++++||||||+|++|+++|.+|++ .|.+|+|||+++..
T Consensus        19 ~~~et~DVvVIG~G~aGl~aA~~la~-~G~~V~llEk~~~~   58 (322)
T d1d4ca2          19 GVKETTDVVIIGSGGAGLAAAVSARD-AGAKVILLEKEPIP   58 (322)
T ss_dssp             CCCEECSEEEECSSHHHHHHHHHHHT-TTCCEEEECSSSSS
T ss_pred             CCCCcceEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            45678999999999999999999998 79999999998754

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.59  E-value=1.4e-08  Score=79.82  Aligned_cols=35  Identities=26%  Similarity=0.481  Sum_probs=32.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +||+||||+|+||..+|.++++ .|++|+|||+++.
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~-~G~kV~viE~~~~   37 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAK-FDKKVMVLDFVTP   37 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGG-GCCCEEEECCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCC
Confidence            6999999999999999999998 7999999998765

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=1.4e-08  Score=83.65  Aligned_cols=35  Identities=31%  Similarity=0.602  Sum_probs=32.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ||+||||||++|+++|++|++ .|.+|+|+|+....
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~-~g~~V~iiEk~~~i   36 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKK-LNKKVLVIEKRNHI   36 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGG-GTCCEEEECSSSSS
T ss_pred             ccEEEECCcHHHHHHHHHHHh-CCCcEEEEECCCCc
Confidence            899999999999999999998 69999999997664

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.58  E-value=2e-08  Score=81.46  Aligned_cols=38  Identities=29%  Similarity=0.483  Sum_probs=34.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|+||||+|++|+.+|.+|+++.|++|+|||+.+..
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~   69 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP   69 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCC
Confidence            47999999999999999999997569999999998754

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.4e-08  Score=78.73  Aligned_cols=37  Identities=27%  Similarity=0.384  Sum_probs=33.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ++.+|||||||.+|+++|++|++ .|.+|+|||+..+.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~-~G~~V~VlEa~~r~   40 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQS-FGMDVTLLEARDRV   40 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh-CCCCEEEEeCCCCC
Confidence            56789999999999999999998 79999999998764

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.57  E-value=2.1e-08  Score=78.81  Aligned_cols=36  Identities=25%  Similarity=0.437  Sum_probs=33.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .+||+||||+|+||+.+|..|++ .|++|+|||+.+.
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~-~G~~V~viE~~~~   40 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAAD-EGLKVAIVERYKT   40 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSSC
T ss_pred             CccCEEEECcCHHHHHHHHHHHH-CCCeEEEEeccCC
Confidence            47999999999999999999998 7999999998764

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.55  E-value=2.4e-08  Score=78.22  Aligned_cols=34  Identities=26%  Similarity=0.469  Sum_probs=31.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ||+|||||++|+++|++|++ .|.+|+|||+.+..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~-~G~~V~vlE~~~~~   35 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRS-RGTDAVLLESSARL   35 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHT-TTCCEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCCC
Confidence            79999999999999999998 79999999997653

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.55  E-value=2.2e-08  Score=82.41  Aligned_cols=36  Identities=19%  Similarity=0.242  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +.||+||||+|+||+++|.+|++ .|.+|+|||+++.
T Consensus         4 ~~~DVvVIG~G~AGl~AAl~aa~-~G~~V~liEK~~~   39 (336)
T d2bs2a2           4 QYCDSLVIGGGLAGLRAAVATQQ-KGLSTIVLSLIPV   39 (336)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHT-TTCCEEEECSSCG
T ss_pred             eecCEEEECcCHHHHHHHHHHHH-CCCCEEEEecCCC
Confidence            46899999999999999999998 7999999999764

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.55  E-value=3.1e-08  Score=76.64  Aligned_cols=35  Identities=34%  Similarity=0.503  Sum_probs=32.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +||+||||+|+||+.+|..+++ .|++|+|||++..
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar-~G~kV~vIEk~~~   37 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQ-LGQKVTIVEKGNL   37 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH-TTCCEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHH-CCCEEEEEecCCC
Confidence            7999999999999999999997 7999999999863

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=3.4e-08  Score=76.68  Aligned_cols=35  Identities=29%  Similarity=0.471  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +||+||||+|++|+.+|.++++ .|++|+|||++..
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar-~G~kV~vIEk~~~   37 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAE-LGARAAVVESHKL   37 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH-TTCCEEEEESSCT
T ss_pred             ccCEEEECCCHHHHHHHHHHHH-CCCEEEEEeccCC
Confidence            7999999999999999999998 7999999998753

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.53  E-value=3.4e-08  Score=74.99  Aligned_cols=35  Identities=37%  Similarity=0.522  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~~   78 (197)
                      .||||||+|++|+++|.+|++ .|. +|+|||+....
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~-~G~~~V~vlE~~~~~   36 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSE-AGITDLLILEATDHI   36 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHH-TTCCCEEEECSSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHh-CCCCcEEEEECCCCC
Confidence            489999999999999999998 685 79999997653

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3.6e-08  Score=79.53  Aligned_cols=34  Identities=29%  Similarity=0.519  Sum_probs=31.5

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      |+||||+|++|+++|.+|++ .|++|+|||+....
T Consensus         1 DViVIGaG~aGL~aA~~L~~-~G~~V~VlE~~~~~   34 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHD-SGLNVVVLEARDRV   34 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHH-TTCCEEEEESSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCCC
Confidence            89999999999999999998 79999999997653

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.49  E-value=3.5e-08  Score=81.36  Aligned_cols=39  Identities=23%  Similarity=0.282  Sum_probs=35.3

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..+++||||||+|.+|+.+|.+|++ .|.+|+|||+++..
T Consensus        16 ~~e~~DVvVIGaG~aGl~AA~~aa~-~G~~V~vlEK~~~~   54 (317)
T d1qo8a2          16 PSETTQVLVVGAGSAGFNASLAAKK-AGANVILVDKAPFS   54 (317)
T ss_dssp             CSEEEEEEEECCSHHHHHHHHHHHH-HTCCEEEECSSSSS
T ss_pred             CCCccCEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            3468999999999999999999998 69999999998764

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.44  E-value=8.2e-08  Score=76.99  Aligned_cols=33  Identities=33%  Similarity=0.607  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      ||+||||+|+||..+|.++++ .|++|+|||++.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~-~G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAAR-HNAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH-TTCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHH-CCCeEEEEecCC
Confidence            999999999999999999998 799999999875

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.41  E-value=9.7e-08  Score=74.40  Aligned_cols=34  Identities=29%  Similarity=0.480  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .|||||+|+||+++|.+|++ .|++|+|||+.+..
T Consensus         3 kV~IIGaG~aGL~aA~~La~-~G~~V~vlE~~~~~   36 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKI-HGLNVTVFEAEGKA   36 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHT-TSCEEEEECSSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHh-CCCCEEEEeCCCCC
Confidence            38999999999999999998 79999999997653

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=8.2e-08  Score=72.32  Aligned_cols=33  Identities=30%  Similarity=0.430  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      .||+||||+|++|+.+|..+++ .|++|+|||+.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar-~G~~v~iie~~   33 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSAR-KGIRTGLMGER   33 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHT-TTCCEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHH-cCCeEEEEEEe
Confidence            3999999999999999999997 79999999973

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=5.9e-08  Score=80.51  Aligned_cols=37  Identities=27%  Similarity=0.379  Sum_probs=34.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ++||+||||+|+||+.+|.++++ .|.+|+|||+++..
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~-~G~~V~lleK~~~~   42 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQ-SGQTCALLSKVFPT   42 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHH-TTCCCEEECSSCGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHH-cCCeEEEEeCCCCC
Confidence            48999999999999999999998 79999999998654

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.40  E-value=1.1e-07  Score=78.69  Aligned_cols=37  Identities=30%  Similarity=0.373  Sum_probs=33.0

Q ss_pred             cccEEEECCChHHHHHHHHHHh---hCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAE---VRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae---~~g~~VLvLEaG~~~   78 (197)
                      ++|+||||+|+||+++|.+|++   ++|.+|+|||+++..
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~   60 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   60 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCC
Confidence            7999999999999999999975   468999999998653

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=8.1e-08  Score=78.54  Aligned_cols=36  Identities=33%  Similarity=0.620  Sum_probs=32.1

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ++||+||||+|+||+++|.++++ .+ +|+|||+++..
T Consensus         6 ~~~DVvVVG~G~AGl~AA~~a~~-~g-~V~llEK~~~~   41 (305)
T d1chua2           6 HSCDVLIIGSGAAGLSLALRLAD-QH-QVIVLSKGPVT   41 (305)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT-TS-CEEEECSSCTT
T ss_pred             ccCCEEEECccHHHHHHHHHhhc-CC-CEEEEECCCCC
Confidence            48999999999999999999987 46 99999998754

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.38  E-value=1e-07  Score=74.19  Aligned_cols=35  Identities=26%  Similarity=0.424  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      .+||+||||+|++|+.+|.++++ .|++|+|||++.
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~-~G~~V~liE~~~   38 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQ-LGIPTVLVEGQA   38 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH-HTCCEEEECSSC
T ss_pred             cccCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCC
Confidence            47999999999999999999998 699999999875

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.35  E-value=2e-07  Score=76.98  Aligned_cols=40  Identities=38%  Similarity=0.570  Sum_probs=36.2

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +.++++|+||||+|++|+++|.+|.+ .|.+|+|+|+++..
T Consensus         3 ~p~~~~dV~IIGAG~sGl~~a~~L~~-~G~~v~i~Ek~~~i   42 (298)
T d1w4xa1           3 QPPEEVDVLVVGAGFSGLYALYRLRE-LGRSVHVIETAGDV   42 (298)
T ss_dssp             CCCSEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCCCCCCEEEECccHHHHHHHHHHHh-CCCCEEEEEcCCCc
Confidence            45679999999999999999999997 79999999998764

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.34  E-value=1.8e-07  Score=74.59  Aligned_cols=36  Identities=36%  Similarity=0.447  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .-+|+|||||++|+++|.+|++ .|++|+|||+....
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~-~G~~V~vlE~~~~~   65 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAG-AGHQVTVLEASERP   65 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-CCCCEEEEeCCCCC
Confidence            3489999999999999999998 69999999997653

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.31  E-value=3.5e-07  Score=73.24  Aligned_cols=40  Identities=28%  Similarity=0.337  Sum_probs=35.9

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          38 QWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        38 ~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ..+++||+||||+|++|+.+|..+++ .|.+|+|||+++..
T Consensus        38 ~~~k~yDvvVIGgG~aG~~aA~~~a~-~G~kv~vve~~~~l   77 (261)
T d1mo9a1          38 NDPREYDAIFIGGGAAGRFGSAYLRA-MGGRQLIVDRWPFL   77 (261)
T ss_dssp             TCCSCBSEEEECCSHHHHHHHHHHHH-TTCCEEEEESSSSS
T ss_pred             CCCccCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCcc
Confidence            45679999999999999999999998 79999999997653

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.30  E-value=3e-07  Score=71.43  Aligned_cols=37  Identities=22%  Similarity=0.358  Sum_probs=31.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +.||+||||+|+||..+|.++++...++|+|+|....
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~   38 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMV   38 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence            5899999999999999999999733357999998643

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.30  E-value=3.3e-07  Score=71.27  Aligned_cols=35  Identities=17%  Similarity=0.319  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +-+|||||+|.+|+++|.+|++ .|.+|+|||++..
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~-~G~~V~vier~~~   40 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILAR-KGYSVHILARDLP   40 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSCT
T ss_pred             CCcEEEECccHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            4579999999999999999998 7999999999753

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.26  E-value=3.6e-07  Score=73.23  Aligned_cols=33  Identities=30%  Similarity=0.466  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      .||+||||+|+||+.+|...|+ .|.+|||||.-
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR-~G~ktllit~~   34 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQ-KGVRVGLLTQS   34 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH-TTCCEEEEESC
T ss_pred             CCcEEEECcCHHHHHHHHHHHH-CCCcEEEEEec
Confidence            5999999999999999999997 79999999864

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.26  E-value=3.5e-07  Score=74.57  Aligned_cols=37  Identities=30%  Similarity=0.453  Sum_probs=33.0

Q ss_pred             cccEEEECCChHHHHHHHHHHh----hCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAE----VRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae----~~g~~VLvLEaG~~~   78 (197)
                      .|||||||+|++|+++|..|++    ..|.+|+|||+.+..
T Consensus         7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            6999999999999999999984    479999999997653

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.25  E-value=3.8e-07  Score=73.75  Aligned_cols=34  Identities=35%  Similarity=0.529  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCC-CeEEEEecCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRS-WNILLVEAGGD   77 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g-~~VLvLEaG~~   77 (197)
                      .||||||+|.+|+++|++|++ .| ++|+|||++..
T Consensus         2 ~dViIIGaGi~G~s~A~~La~-~G~~~V~liE~~~~   36 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVT-RGWNNITVLDQGPL   36 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH-TTCCCEEEECSSCT
T ss_pred             CCEEEECcCHHHHHHHHHHHH-cCCCcEEEEeCCCC
Confidence            499999999999999999998 57 57999999853

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.21  E-value=4.6e-07  Score=71.20  Aligned_cols=37  Identities=16%  Similarity=0.412  Sum_probs=31.8

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ++||+||||+|+||..+|.++++...++|+|+|....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            5899999999999999999999842367999998754

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.20  E-value=6.4e-07  Score=70.41  Aligned_cols=35  Identities=29%  Similarity=0.448  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~~   78 (197)
                      +||+|||+|++|+++|..|++ .|. +|+|+|+.+..
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~-~Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQ-AGIGKVTLLESSSEI   37 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCSEEEEEESSSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHh-CCCCeEEEEeCCCCC
Confidence            699999999999999999998 684 99999998754

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=7.7e-07  Score=73.28  Aligned_cols=36  Identities=33%  Similarity=0.302  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~   77 (197)
                      ++|+||||+|.||+.+|.++++. ++.+|+|||++..
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~   41 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYP   41 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCG
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence            79999999999999999999973 5789999999864

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.16  E-value=6.1e-07  Score=71.94  Aligned_cols=35  Identities=23%  Similarity=0.395  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ++||+|||+|++|+++|..|++ .|.+|+|||+.+.
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~-~G~~v~vlE~~~~   36 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHK-AGIDNVILERQTP   36 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHH-HTCCEEEECSSCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            5799999999999999999998 6999999999763

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.14  E-value=8.9e-07  Score=73.26  Aligned_cols=34  Identities=26%  Similarity=0.600  Sum_probs=31.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||||++|+++|.+|++ .|.+|+|+|+....
T Consensus         4 KI~IIGaG~sGL~aA~~L~k-~G~~V~viEk~~~i   37 (314)
T d2bi7a1           4 KILIVGAGFSGAVIGRQLAE-KGHQVHIIDQRDHI   37 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHT-TTCEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHh-CCCCEEEEECCCCC
Confidence            58999999999999999998 69999999998775

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.09  E-value=1.6e-06  Score=68.04  Aligned_cols=35  Identities=17%  Similarity=0.184  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .-.|+|||+|++|+++|..|++ .|.+|.|||+.+.
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~-~G~~v~v~Er~~~   38 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRD-AGVDVDVYERSPQ   38 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            4569999999999999999998 7999999998654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=8.7e-07  Score=67.39  Aligned_cols=36  Identities=22%  Similarity=0.319  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +..|++|||+|++|+.+|..|++ .+++|+|||+...
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar-~g~~v~iie~~~~   39 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAAR-ANLQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHT-TTCCCEEECCSST
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH-cCCceEEEEeecc
Confidence            57899999999999999999997 7999999998754

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.07  E-value=1.5e-06  Score=71.17  Aligned_cols=37  Identities=32%  Similarity=0.455  Sum_probs=33.7

Q ss_pred             cccEEEECCChHHHHHHHHHHh-hCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAE-VRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~~~   78 (197)
                      ++|++|||+|++|+.+|..|++ +++.+|+|+|+....
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~   87 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP   87 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence            6899999999999999999997 468999999998764

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.05  E-value=1.4e-06  Score=66.58  Aligned_cols=35  Identities=29%  Similarity=0.229  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .+|++|||+|++|+.+|..|++ .+++|+|+|++..
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar-~g~~v~vie~~~~   39 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAAR-AELKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-TTCCCEEECCSSB
T ss_pred             cceEEEECCCHHHHHHHHHHHH-cCCcEEEEEeecc
Confidence            6899999999999999999997 7999999997754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=9.6e-06  Score=62.18  Aligned_cols=38  Identities=32%  Similarity=0.437  Sum_probs=34.1

Q ss_pred             CCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .....++|||+|+||+.+|..|++ .|++|.|+|+.+..
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~-~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAA-RGHQVTLFDAHSEI   78 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHT-TTCEEEEEESSSSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHh-hccceEEEeccCcc
Confidence            345789999999999999999997 79999999998765

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.88  E-value=9.4e-06  Score=63.61  Aligned_cols=39  Identities=28%  Similarity=0.376  Sum_probs=35.0

Q ss_pred             CCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          39 WPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        39 ~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      ....-+++|||+|++|+.+|..|++ .|.+|.|+|+....
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~-~G~~v~l~E~~~~~   84 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLME-SGYTVHLTDTAEKI   84 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSST
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHH-hccceeeEeecccc
Confidence            3457899999999999999999998 79999999998865

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.81  E-value=9.9e-06  Score=60.81  Aligned_cols=34  Identities=29%  Similarity=0.320  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCe-EEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWN-ILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~-VLvLEaG~~~   78 (197)
                      -++|||+|++|+.+|..|++ .|.+ |.|+|+.+..
T Consensus         6 kVaIIGaGpaGl~aA~~l~~-~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           6 KIALLGAGPASISCASFLAR-LGYSDITIFEKQEYV   40 (196)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-TTCCCEEEEESSSSC
T ss_pred             EEEEECChHHHHHHHHHHHH-CCCCeEEEEEecCcc
Confidence            58999999999999999998 6874 9999999875

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.63  E-value=2.5e-05  Score=60.50  Aligned_cols=36  Identities=25%  Similarity=0.259  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~   78 (197)
                      ..++|||+|+||+.+|..|.+. .+.+|.|+|+.+..
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            3689999999999999999762 47899999999764

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.62  E-value=1.5e-05  Score=61.42  Aligned_cols=36  Identities=22%  Similarity=0.345  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCC-------CeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRS-------WNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g-------~~VLvLEaG~~~   78 (197)
                      .+.+.|||||+||+++|+.|++ .|       .+|.|+|+.+..
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~-~G~~~~~~~~~V~v~E~~~~~   44 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLK-AADTTEDLDMAVDMLEMLPTP   44 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-HHHHSTTCCEEEEEEESSSSC
T ss_pred             CcEEEEECcCHHHHHHHHHHHH-cCCccccCCCceEEEecCCCC
Confidence            3689999999999999999987 34       589999998764

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.51  E-value=4.2e-05  Score=59.74  Aligned_cols=33  Identities=24%  Similarity=0.404  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHh--hCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAE--VRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae--~~g~~VLvLEaG~   76 (197)
                      ++||||+|+||..+|.++++  ..+++|.|+|++.
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            68999999999999998876  2457899999865

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.40  E-value=6.6e-05  Score=61.40  Aligned_cols=35  Identities=31%  Similarity=0.462  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~~   78 (197)
                      .|+|||+|++|+++|..|.+. .+.+|.|+|+....
T Consensus         6 rVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~i   41 (335)
T d2gv8a1           6 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSP   41 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            489999999999999999863 23699999999754

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.38  E-value=9.9e-05  Score=64.59  Aligned_cols=42  Identities=29%  Similarity=0.518  Sum_probs=38.5

Q ss_pred             CCCCCcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCCC
Q psy6708          37 DQWPQEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDPS   79 (197)
Q Consensus        37 ~~~~~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~~   79 (197)
                      ++.|++||+||+|.|..=|++|..||+ .|+|||-||+.....
T Consensus         1 d~lP~e~DVII~GTGL~ESILAaAlSr-~GkkVLHiD~N~yYG   42 (491)
T d1vg0a1           1 DNLPSDFDVIVIGTGLPESIIAAACSR-SGQRVLHVDSRSYYG   42 (491)
T ss_dssp             CCCCSBCSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSSC
T ss_pred             CCCCCccCEEEECCChHHHHHHHHHHh-cCCEEEEecCCCcCC
Confidence            367899999999999999999999998 799999999998763

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00014  Score=56.11  Aligned_cols=39  Identities=23%  Similarity=0.407  Sum_probs=32.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHHh-hCCCeEEEEecCCCC
Q psy6708          40 PQEFDFIIVGAGTAGSILASRLAE-VRSWNILLVEAGGDP   78 (197)
Q Consensus        40 ~~~~D~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~~~   78 (197)
                      |.++++||||+|++|+.+|.+|.+ ....+|++|++.+..
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            578999999999999999999976 345789999876543

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.27  E-value=1.7e-05  Score=60.99  Aligned_cols=30  Identities=27%  Similarity=0.329  Sum_probs=26.1

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      ++|||+|.+|+++|.+|++ .|.+|+++|+.
T Consensus         3 V~VIGaGi~GlstA~~L~~-~G~~v~v~e~~   32 (246)
T d1kifa1           3 VVVIGAGVIGLSTALCIHE-RYHSVLQPLDV   32 (246)
T ss_dssp             EEEECCSHHHHHHHHHHHH-HHTTTSSSCEE
T ss_pred             EEEECchHHHHHHHHHHHH-CCCCceEEeee
Confidence            8999999999999999998 58777777663

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.22  E-value=0.00018  Score=52.22  Aligned_cols=34  Identities=29%  Similarity=0.495  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHhh-CCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEV-RSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~-~g~~VLvLEaG~~   77 (197)
                      .+||||+|++|+.+|.+|.+. +..+|.|||+.+.
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            489999999999999999873 4579999998764

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.20  E-value=0.00022  Score=49.91  Aligned_cols=34  Identities=21%  Similarity=0.450  Sum_probs=31.6

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|+.|+-+|..|++ .|.+|.|+|+++..
T Consensus        24 ~v~IiGgG~ig~E~A~~l~~-~G~~Vtlve~~~~i   57 (117)
T d1ebda2          24 SLVVIGGGYIGIELGTAYAN-FGTKVTILEGAGEI   57 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSSS
T ss_pred             eEEEECCCccceeeeeeecc-cccEEEEEEeccee
Confidence            59999999999999999997 79999999999864

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.10  E-value=0.00024  Score=50.29  Aligned_cols=34  Identities=35%  Similarity=0.534  Sum_probs=31.2

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +++|||+|+.|+-+|..|++ .|.+|.|+|+++..
T Consensus        34 ~vvIiGgG~iG~E~A~~l~~-~g~~Vtlv~~~~~l   67 (122)
T d1xhca2          34 EAIIIGGGFIGLELAGNLAE-AGYHVKLIHRGAMF   67 (122)
T ss_dssp             EEEEEECSHHHHHHHHHHHH-TTCEEEEECSSSCC
T ss_pred             cEEEECCcHHHHHHHHHhhc-ccceEEEEeccccc
Confidence            58999999999999999997 79999999998754

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.10  E-value=0.00033  Score=49.66  Aligned_cols=35  Identities=29%  Similarity=0.335  Sum_probs=31.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|+.|+-+|..|++ .|++|.|+|+++..
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~-~g~~Vtli~~~~~~   65 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATART-AGVHVSLVETQPRL   65 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSST
T ss_pred             CeEEEECcchhHHHHHHHhhc-ccceEEEEeecccc
Confidence            469999999999999999998 79999999998763

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00042  Score=48.56  Aligned_cols=34  Identities=26%  Similarity=0.276  Sum_probs=31.2

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|+.|+-+|..|++ .|.+|.|+|+++..
T Consensus        23 ~vvIiGgG~ig~E~A~~l~~-~G~~Vtlve~~~~~   56 (116)
T d1gesa2          23 RVAVVGAGYIGVELGGVING-LGAKTHLFEMFDAP   56 (116)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             EEEEECCChhhHHHHHHhhc-cccEEEEEeecchh
Confidence            38999999999999999997 79999999999764

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.94  E-value=0.00055  Score=48.46  Aligned_cols=34  Identities=18%  Similarity=0.397  Sum_probs=31.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|+.|+-+|..|++ .|++|.|+|+.+..
T Consensus        32 ~vvViGgG~iG~E~A~~l~~-~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          32 NVVVIGSGYIGIEAAEAFAK-AGKKVTVIDILDRP   65 (123)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSST
T ss_pred             EEEEECChHHHHHHHHHhhc-cceEEEEEEecCcc
Confidence            68999999999999999998 79999999998653

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.93  E-value=0.00041  Score=48.44  Aligned_cols=34  Identities=24%  Similarity=0.299  Sum_probs=31.2

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|+.|+-+|..|++ .|.+|.|+|+++..
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~-~g~~Vtlve~~~~i   56 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRK-LGAQVSVVEARERI   56 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHhh-cccceEEEeeeccc
Confidence            59999999999999999998 69999999999764

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.92  E-value=0.00054  Score=49.20  Aligned_cols=35  Identities=14%  Similarity=0.338  Sum_probs=32.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|+.|+-+|..|++ .|.+|.|+|+++..
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~-~g~~Vtvie~~~~~   70 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIK-ANMHVTLLDTAARV   70 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSST
T ss_pred             CEEEEECCchHHHHHHHHHHh-hCcceeeeeecccc
Confidence            469999999999999999998 79999999999764

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.91  E-value=0.00055  Score=48.17  Aligned_cols=34  Identities=18%  Similarity=0.207  Sum_probs=31.1

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .|.+|.|+|++...
T Consensus        24 ~v~IiGgG~iG~E~A~~l~~-~g~~Vtlv~~~~~i   57 (117)
T d1onfa2          24 KIGIVGSGYIAVELINVIKR-LGIDSYIFARGNRI   57 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHT-TTCEEEEECSSSSS
T ss_pred             EEEEECCchHHHHHHHHHHh-ccccceeeehhccc
Confidence            48999999999999999997 79999999998753

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.83  E-value=0.00094  Score=48.95  Aligned_cols=34  Identities=29%  Similarity=0.460  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +++|||+|++|+-+|..|++ .+.+|.|++.....
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~-~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           5 NVVIVGTGLAGVEVAFGLRA-SGWEGNIRLVGDAT   38 (185)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCCSEEEEECSCC
T ss_pred             CEEEECCcHHHHHHHHHHHH-cCCceEEEEecCcc
Confidence            69999999999999999997 57777777776543

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.0011  Score=46.84  Aligned_cols=34  Identities=24%  Similarity=0.179  Sum_probs=31.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .|.+|.++|+++..
T Consensus        24 ~vvIvGgG~iG~E~A~~l~~-~G~~Vtlv~~~~~~   57 (125)
T d3grsa2          24 RSVIVGAGYIAVEMAGILSA-LGSKTSLMIRHDKV   57 (125)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             EEEEEcCCccHHHHHHHHhc-CCcEEEEEeecccc
Confidence            58999999999999999997 79999999999764

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.59  E-value=0.0014  Score=46.23  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=31.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|+.|+-+|..|++ .|.+|.|+|+.+..
T Consensus        25 ~~vIiG~G~ig~E~A~~l~~-lG~~Vtii~~~~~~   58 (122)
T d1v59a2          25 RLTIIGGGIIGLEMGSVYSR-LGSKVTVVEFQPQI   58 (122)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             eEEEECCCchHHHHHHHHHh-hCcceeEEEecccc
Confidence            58999999999999999997 79999999998764

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.58  E-value=0.0013  Score=49.27  Aligned_cols=34  Identities=21%  Similarity=0.206  Sum_probs=29.7

Q ss_pred             EEEECCChHHHHHHHHHHh-hCCCeEEEEecCCCC
Q psy6708          45 FIIVGAGTAGSILASRLAE-VRSWNILLVEAGGDP   78 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae-~~g~~VLvLEaG~~~   78 (197)
                      ++|||+|.+|+.+|..|.+ .++.+|.++|++...
T Consensus         3 VvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            7999999999999999987 356789999998654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.58  E-value=0.0015  Score=45.74  Aligned_cols=34  Identities=26%  Similarity=0.274  Sum_probs=31.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .|.+|.++|+....
T Consensus        24 ~i~IiG~G~ig~E~A~~l~~-~G~~Vtiv~~~~~l   57 (119)
T d3lada2          24 KLGVIGAGVIGLELGSVWAR-LGAEVTVLEAMDKF   57 (119)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSSS
T ss_pred             eEEEECCChHHHHHHHHHHH-cCCceEEEEeeccc
Confidence            48999999999999999997 79999999998764

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.49  E-value=0.0018  Score=44.97  Aligned_cols=35  Identities=6%  Similarity=0.081  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~-~g~~vt~i~~~~~~   57 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNA-TGRRTVMLVRTEPL   57 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHh-cchhheEeeccchh
Confidence            368999999999999999997 79999999998754

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.38  E-value=0.0016  Score=47.10  Aligned_cols=32  Identities=25%  Similarity=0.529  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -++|||+|++|+-+|..|++  +.+|.|+|+.+.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~--~~~Vtvv~~~~~   33 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ--TYEVTVIDKEPV   33 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT--TSEEEEECSSSS
T ss_pred             eEEEECCcHHHHHHHHHHHc--CCCEEEEecccc
Confidence            37999999999999999975  679999998764

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.14  E-value=0.0026  Score=45.12  Aligned_cols=34  Identities=18%  Similarity=0.264  Sum_probs=31.4

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|.-|++ .|.+|.++|+++..
T Consensus        28 ~vvIiGgG~IG~E~A~~~~~-~G~~Vtive~~~~i   61 (125)
T d1ojta2          28 KLLIIGGGIIGLEMGTVYST-LGSRLDVVEMMDGL   61 (125)
T ss_dssp             EEEEESCSHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHhhc-CCCEEEEEEeeccc
Confidence            58999999999999999997 69999999999764

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.13  E-value=0.0016  Score=48.15  Aligned_cols=33  Identities=21%  Similarity=0.455  Sum_probs=26.7

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|++|+-+|..|.+ .+.+|.+++.+..
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~-~g~~v~i~~~~~~   37 (183)
T d1d7ya1           5 PVVVLGAGLASVSFVAELRQ-AGYQGLITVVGDE   37 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHH-HTCCSCEEEEESS
T ss_pred             CEEEECccHHHHHHHHHHHh-cCCceEEEEEecc
Confidence            49999999999999999997 4666666665544

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.09  E-value=0.0022  Score=45.11  Aligned_cols=34  Identities=21%  Similarity=0.345  Sum_probs=31.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|..|+-+|..|++ .|.+|.|||+++..
T Consensus        27 ~~viiG~G~iglE~A~~~~~-~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGR-IGSEVTVVEFASEI   60 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             eEEEEccchHHHHHHHHHHh-cCCeEEEEEEcccc
Confidence            58899999999999999997 69999999999864

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.09  E-value=0.0042  Score=43.13  Aligned_cols=35  Identities=17%  Similarity=0.171  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHHh--hCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAE--VRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae--~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|+.|+-+|..|++  ..+.+|.|+|+++..
T Consensus        22 ~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i   58 (117)
T d1aoga2          22 RVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI   58 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             eEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh
Confidence            59999999999999977665  245689999998754

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.004  Score=44.87  Aligned_cols=33  Identities=15%  Similarity=0.299  Sum_probs=30.3

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      +.|||+|.-|+.+|.+|++ .|.+|.++.+....
T Consensus         3 I~IiGaG~iG~~~a~~L~~-~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           3 ITVLGCGALGQLWLTALCK-QGHEVQGWLRVPQP   35 (167)
T ss_dssp             EEEECCSHHHHHHHHHHHH-TTCEEEEECSSCCS
T ss_pred             EEEECcCHHHHHHHHHHHH-CCCceEEEEcCHHH
Confidence            7899999999999999998 79999999988764

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.02  E-value=0.0035  Score=45.99  Aligned_cols=32  Identities=22%  Similarity=0.450  Sum_probs=29.2

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +.|||+|..|+.+|..|++ .|++|.++++.+.
T Consensus         4 iaIiGaG~~G~~~A~~l~~-~G~~V~~~~r~~~   35 (184)
T d1bg6a2           4 YAVLGLGNGGHAFAAYLAL-KGQSVLAWDIDAQ   35 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHH-TTCEEEEECSCHH
T ss_pred             EEEECccHHHHHHHHHHHH-CCCEEEEEECCHH
Confidence            7899999999999999998 7999999998643

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.99  E-value=0.0031  Score=45.69  Aligned_cols=32  Identities=9%  Similarity=0.161  Sum_probs=29.2

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      ++|||+|..|..+|.+|++ .|.+|.|+++-..
T Consensus         5 IliiGaG~~G~~~a~~L~~-~g~~V~v~dr~~~   36 (182)
T d1e5qa1           5 VLMLGSGFVTRPTLDVLTD-SGIKVTVACRTLE   36 (182)
T ss_dssp             EEEECCSTTHHHHHHHHHT-TTCEEEEEESCHH
T ss_pred             EEEECCCHHHHHHHHHHHh-CCCEEEEEECChH
Confidence            7899999999999999998 6999999998754

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.92  E-value=0.0036  Score=44.02  Aligned_cols=33  Identities=21%  Similarity=0.479  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .|||||.|..|..+|.+|.+ .|..|+++|.-+.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~-~g~~vvvid~d~~   34 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHR-MGHEVLAVDINEE   34 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-TTCCCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHH-CCCeEEEecCcHH
Confidence            48999999999999999998 6999999998654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.88  E-value=0.0052  Score=43.12  Aligned_cols=31  Identities=19%  Similarity=0.187  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      .++|||+|..|+-+|..|++ -|.+|.||++.
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~-lG~~Vtii~~~   52 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAG-IGLDVTVMVRS   52 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             eEEEECCCccHHHHHHHHhh-cCCeEEEEEec
Confidence            59999999999999999997 79999999975

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=95.77  E-value=0.0071  Score=41.73  Aligned_cols=35  Identities=20%  Similarity=0.158  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHHh--hCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAE--VRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae--~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|+.|+-+|..|++  ..+.+|.++|+++..
T Consensus        20 ~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i   56 (117)
T d1feca2          20 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI   56 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             eEEEECCChHHHHHHHHhHhhcccccccceecccccc
Confidence            59999999999999987665  247899999998764

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0052  Score=43.82  Aligned_cols=35  Identities=23%  Similarity=0.294  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHh---hCCCeEEEEecCCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAE---VRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae---~~g~~VLvLEaG~~~   78 (197)
                      .++|||+|+.|+-+|..|++   ..+.+|.+||+++..
T Consensus        39 ~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~   76 (137)
T d1m6ia2          39 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN   76 (137)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccC
Confidence            69999999999999999974   258899999998763

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.69  E-value=0.0066  Score=42.75  Aligned_cols=32  Identities=38%  Similarity=0.662  Sum_probs=29.4

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +||+|.|.-|..+|.+|.+ .|.+|++||.-+.
T Consensus         3 IvI~G~G~~G~~la~~L~~-~g~~v~vid~d~~   34 (132)
T d1lssa_           3 IIIAGIGRVGYTLAKSLSE-KGHDIVLIDIDKD   34 (132)
T ss_dssp             EEEECCSHHHHHHHHHHHH-TTCEEEEEESCHH
T ss_pred             EEEECCCHHHHHHHHHHHH-CCCCcceecCChh
Confidence            7899999999999999997 6999999999764

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=94.45  E-value=0.024  Score=37.50  Aligned_cols=33  Identities=15%  Similarity=0.240  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .+.|+|.|.+|..+|..|.+ .|.+|.+.|....
T Consensus         7 ~v~ViGlG~sG~s~a~~L~~-~g~~v~~~D~~~~   39 (93)
T d2jfga1           7 NVVIIGLGLTGLSCVDFFLA-RGVTPRVMDTRMT   39 (93)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-TTCCCEEEESSSS
T ss_pred             EEEEEeECHHHHHHHHHHHH-CCCEEEEeeCCcC
Confidence            48999999999999999997 6999999998654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.08  E-value=0.034  Score=39.73  Aligned_cols=34  Identities=18%  Similarity=0.173  Sum_probs=29.2

Q ss_pred             cEEEE--CCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIV--GAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIV--GsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .+||+  |+|..|+-+|..|++ .|++|.|||+.+..
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~-~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLAT-AGHEVTIVSGVHLA   76 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHH-TTCEEEEEESSCTT
T ss_pred             ceEEEecCCChHHHHHHHHHHH-cCCeEEEEecCCcc
Confidence            44554  999999999999998 79999999998654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.81  E-value=0.033  Score=41.84  Aligned_cols=33  Identities=24%  Similarity=0.436  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -+.|||+|.-|.-.|..++. .|.+|.++|.-+.
T Consensus         6 kvaViGaG~mG~~iA~~~a~-~G~~V~l~D~~~~   38 (192)
T d1f0ya2           6 HVTVIGGGLMGAGIAQVAAA-TGHTVVLVDQTED   38 (192)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHH
T ss_pred             EEEEECcCHHHHHHHHHHHh-CCCcEEEEECChH
Confidence            37899999999999999997 7999999987653

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=93.06  E-value=0.035  Score=41.64  Aligned_cols=33  Identities=18%  Similarity=0.333  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      -.+.|||+|.-|.++|..|++ .+++|.+..+.+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~-~g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSK-KCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT-TEEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHH-cCCeEEEEEecH
Confidence            359999999999999999997 588999987643

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=93.04  E-value=0.039  Score=41.19  Aligned_cols=32  Identities=25%  Similarity=0.357  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      -+.|||+|.-|.-.|..++. .|.+|.++|.-+
T Consensus         6 ~vaViGaG~mG~~iA~~~a~-~G~~V~l~D~~~   37 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSAS-KGTPILMKDINE   37 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHH-TTCCEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence            38899999999999999997 799999998754

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.77  E-value=0.05  Score=40.85  Aligned_cols=31  Identities=26%  Similarity=0.455  Sum_probs=28.2

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +.|||.|.-|+.+|..||+ .|.+|..+|...
T Consensus         3 I~ViGlG~vGl~~a~~la~-~g~~V~g~D~n~   33 (202)
T d1mv8a2           3 ISIFGLGYVGAVCAGCLSA-RGHEVIGVDVSS   33 (202)
T ss_dssp             EEEECCSTTHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             EEEECCCHhHHHHHHHHHh-CCCcEEEEeCCH
Confidence            6899999999999999997 799999999754

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.44  E-value=0.075  Score=37.77  Aligned_cols=31  Identities=29%  Similarity=0.377  Sum_probs=27.3

Q ss_pred             EEEE-CCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          45 FIIV-GAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        45 ~IIV-GsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +.|| |+|.-|..+|.+|++ .|.+|.|..+.+
T Consensus         3 i~vigGaG~iG~alA~~la~-~G~~V~l~~R~~   34 (212)
T d1jaya_           3 VALLGGTGNLGKGLALRLAT-LGHEIVVGSRRE   34 (212)
T ss_dssp             EEEETTTSHHHHHHHHHHHT-TTCEEEEEESSH
T ss_pred             EEEEeCCcHHHHHHHHHHHH-CCCEEEEEECCH
Confidence            5788 789999999999997 799999998764

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.16  E-value=0.064  Score=39.57  Aligned_cols=30  Identities=27%  Similarity=0.398  Sum_probs=26.5

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      +.|||+|.-|.++|..|++ .+.+|.+..+.
T Consensus         3 I~ViGaG~~GtalA~~la~-~g~~V~l~~r~   32 (180)
T d1txga2           3 VSILGAGAMGSALSVPLVD-NGNEVRIWGTE   32 (180)
T ss_dssp             EEEESCCHHHHHHHHHHHH-HCCEEEEECCG
T ss_pred             EEEECCCHHHHHHHHHHHH-CCCEEEEEEec
Confidence            6899999999999999998 58999998553

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=91.86  E-value=0.098  Score=37.53  Aligned_cols=31  Identities=29%  Similarity=0.369  Sum_probs=27.7

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +-|||.|.-|..+|..|.+ .|.+|.+.++..
T Consensus         3 I~iIG~G~mG~~lA~~l~~-~g~~V~~~d~~~   33 (165)
T d2f1ka2           3 IGVVGLGLIGASLAGDLRR-RGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEECCSHHHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             EEEEeecHHHHHHHHHHHH-CCCEEEEEECCc
Confidence            5799999999999999997 799999998754

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=91.85  E-value=0.11  Score=36.82  Aligned_cols=33  Identities=18%  Similarity=0.274  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -+||+|.|..|..++.+|.+ .+.+|.+||.-++
T Consensus         5 HiII~G~g~~g~~l~~~L~~-~~~~v~vId~d~~   37 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQ-RGQNVTVISNLPE   37 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-TTCCEEEEECCCH
T ss_pred             EEEEECCCHHHHHHHHHHHH-cCCCEEEEeccch
Confidence            48999999999999999997 6999999997653

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=91.81  E-value=0.11  Score=34.94  Aligned_cols=31  Identities=16%  Similarity=0.242  Sum_probs=24.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEec
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEA   74 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEa   74 (197)
                      =+++|||+|.+|.=+|..|++. .++|.++-+
T Consensus        33 K~VlVVG~g~Sa~dia~~l~~~-ak~v~~~~~   63 (107)
T d2gv8a2          33 ESVLVVGGASSANDLVRHLTPV-AKHPIYQSL   63 (107)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTT-SCSSEEEEC
T ss_pred             CeEEEECCCCCHHHHHHHHHHh-cCEEEEEEe
Confidence            4899999999999999999974 445444433

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.30  E-value=0.14  Score=34.69  Aligned_cols=32  Identities=25%  Similarity=0.237  Sum_probs=28.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      --++|||+|..|...|..|.+ .|.+|.|+..-
T Consensus        13 k~vlVvG~G~va~~ka~~ll~-~ga~v~v~~~~   44 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLE-AGARLTVNALT   44 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTBEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHH-CCCeEEEEecc
Confidence            468999999999999999998 79999998643

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.58  E-value=0.19  Score=36.17  Aligned_cols=34  Identities=24%  Similarity=0.264  Sum_probs=27.6

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|||+|-.|+=+|..+.+....+|.++++...
T Consensus        47 kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          47 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             EEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            5999999999999999988732367889887543

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=90.47  E-value=0.14  Score=36.11  Aligned_cols=33  Identities=24%  Similarity=0.442  Sum_probs=29.5

Q ss_pred             cEEEEC-CChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVG-AGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVG-sG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      -+.||| .|.-|..+|.+|.+ .|..|.+.++-..
T Consensus        11 kI~iIGg~G~mG~~la~~L~~-~G~~V~~~d~~~~   44 (152)
T d2pv7a2          11 KIVIVGGYGKLGGLFARYLRA-SGYPISILDREDW   44 (152)
T ss_dssp             CEEEETTTSHHHHHHHHHHHT-TTCCEEEECTTCG
T ss_pred             eEEEEcCCCHHHHHHHHHHHH-cCCCcEecccccc
Confidence            689999 79999999999997 7999999988654

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.36  E-value=0.095  Score=37.24  Aligned_cols=31  Identities=19%  Similarity=0.385  Sum_probs=27.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEe
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVE   73 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLE   73 (197)
                      .=-++|||+|..|.-.|..|.+ .|.+|.|+-
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~-~GA~VtVva   43 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMP-TGCKLTLVS   43 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGG-GTCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-CCCEEEEEe
Confidence            3468999999999999999997 799999994

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=88.32  E-value=0.31  Score=33.72  Aligned_cols=35  Identities=23%  Similarity=0.253  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      =+++|||+|-+.+-.|..|++ -..+|.||-+++..
T Consensus        31 k~V~VvGgG~sA~~~A~~L~~-~a~~V~li~r~~~~   65 (126)
T d1fl2a2          31 KRVAVIGGGNSGVEAAIDLAG-IVEHVTLLEFAPEM   65 (126)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TBSEEEEECSSSSC
T ss_pred             ceEEEEeCCHHHHHHHHhhhc-cCCceEEEeccccc
Confidence            389999999999999999997 57899999988654

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=86.88  E-value=0.14  Score=35.63  Aligned_cols=36  Identities=25%  Similarity=0.313  Sum_probs=26.4

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCe-EEEEecCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWN-ILLVEAGG   76 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~-VLvLEaG~   76 (197)
                      +.+-++|+|+|.+|..++..|.++.+.+ |.+++--+
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~   38 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDP   38 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCch
Confidence            4678999999999999998776544544 45565443

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.77  E-value=0.41  Score=33.40  Aligned_cols=35  Identities=11%  Similarity=0.170  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      =+++|||+|-+.+--|..|++ --.+|.||-++...
T Consensus        35 k~V~VvGgGdsA~e~A~~L~~-~a~~V~li~r~~~~   69 (130)
T d1vdca2          35 KPLAVIGGGDSAMEEANFLTK-YGSKVYIIHRRDAF   69 (130)
T ss_dssp             SEEEEECCSHHHHHHHHHHTT-TSSEEEEECSSSSC
T ss_pred             CEEEEEcCchHHHHHHHHHhC-CCCcEEEEEecccc
Confidence            489999999999999999997 56899999888654

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=86.21  E-value=0.47  Score=32.70  Aligned_cols=35  Identities=14%  Similarity=0.159  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      =+++|||+|-++.-.|..|++ -..+|.+|-++...
T Consensus        28 k~V~VvGgGdsA~e~A~~L~~-~a~~V~li~r~~~~   62 (126)
T d1trba2          28 QKVAVIGGGNTAVEEALYLSN-IASEVHLIHRRDGF   62 (126)
T ss_dssp             SEEEEECSSHHHHHHHHHHTT-TSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHhh-cCCcEEEEeecccc
Confidence            389999999999999999997 57899999988754

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=85.92  E-value=0.45  Score=34.27  Aligned_cols=33  Identities=15%  Similarity=0.225  Sum_probs=28.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      -.++|+|+|-++-++++.|.+ .+.+|.++.+-.
T Consensus        19 k~vlIlGaGGaarai~~al~~-~g~~i~I~nRt~   51 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLS-LDCAVTITNRTV   51 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHhcc-cceEEEeccchH
Confidence            468999999999999999997 688888886643

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=85.84  E-value=0.5  Score=33.30  Aligned_cols=33  Identities=33%  Similarity=0.385  Sum_probs=26.7

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +.|||+|.-|..+|..|+.+.-..+++++.-..
T Consensus         4 I~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~   36 (142)
T d1uxja1           4 ISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   36 (142)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence            679999999999999999853358888876443

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=85.80  E-value=0.52  Score=33.45  Aligned_cols=33  Identities=12%  Similarity=0.190  Sum_probs=26.9

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .++|+|+|+.|..++.-+. ..|.+|.++|..+.
T Consensus        29 ~vlV~G~G~vG~~~~~~ak-~~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAK-AYGAFVVCTARSPR   61 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HTTCEEEEEESCHH
T ss_pred             EEEEEcccccchhhHhhHh-hhcccccccchHHH
Confidence            4789999999999876655 47899999997654

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=85.26  E-value=0.4  Score=35.12  Aligned_cols=30  Identities=20%  Similarity=0.264  Sum_probs=26.0

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +.|||.|.-|+.+|..|++  |.+|..+|-.+
T Consensus         3 I~ViGlG~vGl~~a~~~a~--g~~V~g~Din~   32 (196)
T d1dlja2           3 IAVAGSGYVGLSLGVLLSL--QNEVTIVDILP   32 (196)
T ss_dssp             EEEECCSHHHHHHHHHHTT--TSEEEEECSCH
T ss_pred             EEEECCChhHHHHHHHHHC--CCcEEEEECCH
Confidence            6899999999999988863  89999998664

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=84.50  E-value=0.78  Score=32.73  Aligned_cols=37  Identities=14%  Similarity=0.198  Sum_probs=29.5

Q ss_pred             CcccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          41 QEFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        41 ~~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +..-+.|||+|.-|..+|..|+++.-..++|++.-..
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~   42 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   42 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccc
Confidence            4677999999999999999998753347888876543

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=84.27  E-value=0.39  Score=35.27  Aligned_cols=34  Identities=12%  Similarity=0.227  Sum_probs=25.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAG   75 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG   75 (197)
                      .-+|+|||+|.+|.=+|..|++...+.+++.-++
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            4579999999999999999998533344444443

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=84.05  E-value=0.7  Score=33.90  Aligned_cols=35  Identities=14%  Similarity=0.212  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      .-.++|||+|.+|..++..... -|.+|.++|....
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~-lGA~V~~~D~~~~   66 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVG-LGAQVQIFDINVE   66 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCHH
T ss_pred             CcEEEEECCChHHHHHHHHHhh-CCCEEEEEeCcHH
Confidence            5689999999999999998876 6999999998643

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=83.79  E-value=0.036  Score=42.19  Aligned_cols=35  Identities=17%  Similarity=0.075  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -.++|||+|..|+-+|..|++ .+.+|.|+++....
T Consensus       181 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtli~r~~~~  215 (233)
T d1djqa3         181 APRLIADATFTGHRVAREIEE-ANPQIAIPYKRETI  215 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTS-SCTTSCCCCCCCCC
T ss_pred             CceeEecCchHHHHHHHHHHh-cCCceEEEEecccc
Confidence            468999999999999999997 68999999988653

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=83.69  E-value=0.54  Score=33.39  Aligned_cols=35  Identities=23%  Similarity=0.324  Sum_probs=27.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCC-CeEEEEecCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRS-WNILLVEAGG   76 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g-~~VLvLEaG~   76 (197)
                      +--+.|||+|.-|..+|..|++..- ..+.|+|.-.
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            3468999999999999999998421 4688988643

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=83.69  E-value=0.69  Score=32.42  Aligned_cols=32  Identities=28%  Similarity=0.386  Sum_probs=27.6

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +-|||.|..|..+|.+|.+ .|..|.+......
T Consensus         3 IgiIG~G~mG~~ia~~l~~-~g~~v~~~~~~~~   34 (152)
T d1i36a2           3 VGFIGFGEVAQTLASRLRS-RGVEVVTSLEGRS   34 (152)
T ss_dssp             EEEESCSHHHHHHHHHHHH-TTCEEEECCTTCC
T ss_pred             EEEEcHHHHHHHHHHHHHH-CCCeEEEEcCchh
Confidence            6799999999999999998 6999988876543

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.32  E-value=0.62  Score=33.15  Aligned_cols=31  Identities=16%  Similarity=0.337  Sum_probs=27.8

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +-|||-|.-|..+|.+|.+ .|.+|.+.++..
T Consensus         4 Ig~IGlG~MG~~iA~~L~~-~g~~v~~~d~~~   34 (162)
T d3cuma2           4 IAFIGLGHMGAPMATNLLK-AGYLLNVFDLVQ   34 (162)
T ss_dssp             EEEECCSTTHHHHHHHHHH-TTCEEEEECSSH
T ss_pred             EEEEEEHHHHHHHHHHHHH-CCCeEEEEECch
Confidence            6799999999999999997 799999988754

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=82.51  E-value=0.79  Score=32.96  Aligned_cols=33  Identities=12%  Similarity=0.235  Sum_probs=29.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          43 FDFIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        43 ~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      -.+=|||-|.-|..+|.+|.+ .|.+|.+.++-+
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~-~G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMND-HGFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH-TTCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHH-CCCeEEEEcCCH
Confidence            467899999999999999997 799999998654

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=82.12  E-value=1  Score=33.41  Aligned_cols=36  Identities=11%  Similarity=0.171  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      .-.++|||+|.+|..+|..... -|.+|.++|.....
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~-lGA~V~v~D~~~~~   64 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKR-LGAVVMATDVRAAT   64 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCSTT
T ss_pred             CcEEEEEcCcHHHHHHHHHHHH-cCCEEEEEeccHHH
Confidence            4589999999999999888765 69999999987653

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.98  E-value=0.94  Score=32.18  Aligned_cols=33  Identities=12%  Similarity=0.268  Sum_probs=26.5

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGD   77 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~   77 (197)
                      .++|+|+|+.|..++.-+.. .|. +|.++|..+.
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~-~G~~~Vi~~d~~~~   62 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKA-MGAAQVVVTDLSAT   62 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCSEEEEEESCHH
T ss_pred             EEEEECCCccHHHHHHHHHH-cCCceEEeccCCHH
Confidence            48999999999988877665 575 7999987654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=81.23  E-value=0.74  Score=32.98  Aligned_cols=31  Identities=26%  Similarity=0.412  Sum_probs=27.2

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGG   76 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~   76 (197)
                      +=|||-|.-|..+|.+|.+ .|.+|.+-++.+
T Consensus         4 IGvIGlG~MG~~ma~~L~~-~G~~V~~~dr~~   34 (178)
T d1pgja2           4 VGVVGLGVMGANLALNIAE-KGFKVAVFNRTY   34 (178)
T ss_dssp             EEEECCSHHHHHHHHHHHH-TTCCEEEECSSH
T ss_pred             EEEEeehHHHHHHHHHHHH-CCCeEEEEECCH
Confidence            5699999999999999997 799999987643

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=81.10  E-value=0.98  Score=31.85  Aligned_cols=31  Identities=26%  Similarity=0.326  Sum_probs=25.7

Q ss_pred             EEEECCChHHHHHHHHHHhhCC--CeEEEEecCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRS--WNILLVEAGG   76 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g--~~VLvLEaG~   76 (197)
                      +.|||.|.-|..+|..|.+ .+  .+|...++-.
T Consensus         4 I~IIG~G~mG~sla~~L~~-~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           4 VLIVGVGFMGGSFAKSLRR-SGFKGKIYGYDINP   36 (171)
T ss_dssp             EEEESCSHHHHHHHHHHHH-TTCCSEEEEECSCH
T ss_pred             EEEEccCHHHHHHHHHHHh-cCCCeEEEEEECCh
Confidence            7899999999999999987 45  5788777644

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=81.07  E-value=0.83  Score=34.14  Aligned_cols=34  Identities=18%  Similarity=0.303  Sum_probs=29.6

Q ss_pred             cEEEECC-ChHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy6708          44 DFIIVGA-GTAGSILASRLAEVRSWNILLVEAGGDP   78 (197)
Q Consensus        44 D~IIVGs-G~aG~~~A~~Lae~~g~~VLvLEaG~~~   78 (197)
                      -++|+|+ |.-|..++.+|.+ .|.+|.++.+....
T Consensus         5 KILVtGatG~iG~~l~~~L~~-~G~~V~~l~R~~~~   39 (307)
T d1qyca_           5 RILLIGATGYIGRHVAKASLD-LGHPTFLLVRESTA   39 (307)
T ss_dssp             CEEEESTTSTTHHHHHHHHHH-TTCCEEEECCCCCT
T ss_pred             EEEEECCCcHHHHHHHHHHHH-CCCeEEEEECCCcc
Confidence            4899996 9999999999997 69999999887653

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=80.79  E-value=1  Score=31.73  Aligned_cols=32  Identities=31%  Similarity=0.470  Sum_probs=25.5

Q ss_pred             cEEEECCChHHHHHHHHHHhhCCC--eEEEEecCC
Q psy6708          44 DFIIVGAGTAGSILASRLAEVRSW--NILLVEAGG   76 (197)
Q Consensus        44 D~IIVGsG~aG~~~A~~Lae~~g~--~VLvLEaG~   76 (197)
                      -+.|||+|.-|+.+|+.|+.+ +.  .++|++.-+
T Consensus         3 Ki~IIGaG~VG~~~a~~l~~~-~l~~ElvL~D~~~   36 (143)
T d1llda1           3 KLAVIGAGAVGSTLAFAAAQR-GIAREIVLEDIAK   36 (143)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCCcEEEEEEecc
Confidence            378999999999999999973 43  578877543

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=80.71  E-value=0.65  Score=35.25  Aligned_cols=36  Identities=25%  Similarity=0.331  Sum_probs=30.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhhCCC-eEEEEecCCCC
Q psy6708          42 EFDFIIVGAGTAGSILASRLAEVRSW-NILLVEAGGDP   78 (197)
Q Consensus        42 ~~D~IIVGsG~aG~~~A~~Lae~~g~-~VLvLEaG~~~   78 (197)
                      .--++|||.|.-|+.+|..|+. .|+ ++.++|.....
T Consensus        30 ~~~VliiG~GglGs~va~~La~-~Gvg~i~lvD~D~Ve   66 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLAS-AGVGNLTLLDFDTVS   66 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHH-HTCSEEEEECCCBCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHH-cCCCeEEEECCcccc
Confidence            4679999999999999999998 575 77888766543

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.56  E-value=0.9  Score=32.14  Aligned_cols=32  Identities=13%  Similarity=0.383  Sum_probs=28.1

Q ss_pred             EEEECCChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy6708          45 FIIVGAGTAGSILASRLAEVRSWNILLVEAGGD   77 (197)
Q Consensus        45 ~IIVGsG~aG~~~A~~Lae~~g~~VLvLEaG~~   77 (197)
                      +-|||-|.-|..+|.+|.+ .|.+|.+.++.+.
T Consensus         3 IgiIGlG~MG~~~A~~L~~-~G~~V~~~d~~~~   34 (161)
T d1vpda2           3 VGFIGLGIMGKPMSKNLLK-AGYSLVVSDRNPE   34 (161)
T ss_dssp             EEEECCSTTHHHHHHHHHH-TTCEEEEECSCHH
T ss_pred             EEEEehhHHHHHHHHHHHH-CCCeEEEEeCCcc
Confidence            5689999999999999997 7999999877543