Psyllid ID: psy6714
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 303 | 2.2.26 [Sep-21-2011] | |||||||
| Q5R9X6 | 319 | Pyrroline-5-carboxylate r | yes | N/A | 0.435 | 0.413 | 0.451 | 6e-28 | |
| P32322 | 319 | Pyrroline-5-carboxylate r | yes | N/A | 0.435 | 0.413 | 0.451 | 6e-28 | |
| Q17QJ7 | 320 | Pyrroline-5-carboxylate r | yes | N/A | 0.435 | 0.412 | 0.451 | 2e-27 | |
| Q58DT4 | 320 | Pyrroline-5-carboxylate r | no | N/A | 0.435 | 0.412 | 0.437 | 3e-27 | |
| Q4R6W7 | 320 | Pyrroline-5-carboxylate r | N/A | N/A | 0.435 | 0.412 | 0.444 | 5e-27 | |
| Q6AY23 | 320 | Pyrroline-5-carboxylate r | yes | N/A | 0.435 | 0.412 | 0.444 | 5e-27 | |
| Q922Q4 | 320 | Pyrroline-5-carboxylate r | yes | N/A | 0.435 | 0.412 | 0.444 | 5e-27 | |
| Q9DCC4 | 274 | Pyrroline-5-carboxylate r | no | N/A | 0.429 | 0.474 | 0.407 | 1e-26 | |
| Q5PQJ6 | 274 | Pyrroline-5-carboxylate r | no | N/A | 0.429 | 0.474 | 0.407 | 1e-26 | |
| Q53H96 | 274 | Pyrroline-5-carboxylate r | no | N/A | 0.429 | 0.474 | 0.4 | 1e-26 |
| >sp|Q5R9X6|P5CR1_PONAB Pyrroline-5-carboxylate reductase 1, mitochondrial OS=Pongo abelii GN=PYCR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 88/135 (65%), Gaps = 3/135 (2%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
MG K+T NKE +S+V+ LAVKPHI+P L++I + ++++S A GV I ++E+
Sbjct: 48 MGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKK 107
Query: 222 LPKNS---RIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLL 278
L R+IR M NTP +VR+GA+V+ G+ A +D + + L SVG C EV E L+
Sbjct: 108 LSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLI 167
Query: 279 DGITGLSGSGPAYRY 293
D +TGLSGSGPAY +
Sbjct: 168 DAVTGLSGSGPAYAF 182
|
Housekeeping enzyme that catalyzes the last step in proline biosynthesis. Can utilize both NAD and NADP, but has higher affinity for NAD. Involved in the cellular response to oxidative stress. Pongo abelii (taxid: 9601) EC: 1EC: .EC: 5EC: .EC: 1EC: .EC: 2 |
| >sp|P32322|P5CR1_HUMAN Pyrroline-5-carboxylate reductase 1, mitochondrial OS=Homo sapiens GN=PYCR1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 88/135 (65%), Gaps = 3/135 (2%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
MG K+T NKE +S+V+ LAVKPHI+P L++I + ++++S A GV I ++E+
Sbjct: 48 MGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKK 107
Query: 222 LPKNS---RIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLL 278
L R+IR M NTP +VR+GA+V+ G+ A +D + + L SVG C EV E L+
Sbjct: 108 LSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLI 167
Query: 279 DGITGLSGSGPAYRY 293
D +TGLSGSGPAY +
Sbjct: 168 DAVTGLSGSGPAYAF 182
|
Housekeeping enzyme that catalyzes the last step in proline biosynthesis. Can utilize both NAD and NADP, but has higher affinity for NAD. Involved in the cellular response to oxidative stress. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q17QJ7|P5CR2_BOVIN Pyrroline-5-carboxylate reductase 2 OS=Bos taurus GN=PYCR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 86/135 (63%), Gaps = 3/135 (2%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
MG +T NKE +S+V+ LAVKPHI+P L++I ++++S A GV I ++E+
Sbjct: 48 MGVNLTRSNKETVRHSDVLFLAVKPHIIPFILDEIGADVQARHIVVSCAAGVTISSVEKK 107
Query: 222 LPKNS---RIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLL 278
L ++IR M NTP LVR+GA+V+ G+ A +D Q + L SVG C EV E L+
Sbjct: 108 LMAFQPAPKVIRCMTNTPVLVREGATVYATGTHALVEDGQLLEQLMSSVGFCTEVEEDLI 167
Query: 279 DGITGLSGSGPAYRY 293
D +TGLSGSGPAY +
Sbjct: 168 DAVTGLSGSGPAYAF 182
|
Housekeeping enzyme that catalyzes the last step in proline biosynthesis. In some cell types, such as erythrocytes, its primary function may be the generation of NADP(+). Can utilize both NAD and NADP. Has higher affinity for NADP, but higher catalytic efficiency with NADH. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q58DT4|P5CR1_BOVIN Pyrroline-5-carboxylate reductase 1, mitochondrial OS=Bos taurus GN=PYCR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 86/135 (63%), Gaps = 3/135 (2%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
MG +T NKE +S+V+ LAVKPHI+P L++I ++++S A GV I ++E+
Sbjct: 48 MGVNLTHHNKETVQHSDVLFLAVKPHIIPFILDEIAANIEARHIVVSCAAGVTISSIEKK 107
Query: 222 LPKNS---RIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLL 278
L ++IR M NTP +VR+GA+V+ G+ A +D + + L SVG C EV E L+
Sbjct: 108 LTAFQPAPKVIRCMTNTPVVVREGATVYATGTHAQVEDGRLLEQLMSSVGFCTEVEEDLI 167
Query: 279 DGITGLSGSGPAYRY 293
D +TGLSGSGPAY +
Sbjct: 168 DAVTGLSGSGPAYAF 182
|
Housekeeping enzyme that catalyzes the last step in proline biosynthesis. Can utilize both NAD and NADP, but has higher affinity for NAD. Involved in the cellular response to oxidative stress. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q4R6W7|P5CR2_MACFA Pyrroline-5-carboxylate reductase 2 OS=Macaca fascicularis GN=PYCR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 86/135 (63%), Gaps = 3/135 (2%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
MG +T NKE +S+V+ LAVKPHI+P L++I ++++S A GV I ++E+
Sbjct: 48 MGVNLTRSNKETVKHSDVLFLAVKPHIIPFILDEIGADVQARHIVVSCAAGVTISSVEKK 107
Query: 222 LPKNS---RIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLL 278
L ++IR M NTP +VR+GA+V+ G+ A +D Q + L SVG C EV E L+
Sbjct: 108 LMAFQPAPKVIRCMTNTPVVVREGATVYAMGTHALVEDGQLLEQLMSSVGFCTEVEEDLI 167
Query: 279 DGITGLSGSGPAYRY 293
D +TGLSGSGPAY +
Sbjct: 168 DAVTGLSGSGPAYAF 182
|
Housekeeping enzyme that catalyzes the last step in proline biosynthesis. In some cell types, such as erythrocytes, its primary function may be the generation of NADP(+). Can utilize both NAD and NADP. Has higher affinity for NADP, but higher catalytic efficiency with NADH. Macaca fascicularis (taxid: 9541) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q6AY23|P5CR2_RAT Pyrroline-5-carboxylate reductase 2 OS=Rattus norvegicus GN=Pycr2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 87/135 (64%), Gaps = 3/135 (2%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
MG +T NK+ +S+V+ LAVKPHI+P L++I E ++++S A GV I ++E+
Sbjct: 48 MGVNLTRSNKDTVRHSDVLFLAVKPHIIPFILDEIGADVQERHIVVSCAAGVTISSVEKK 107
Query: 222 LPKNS---RIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLL 278
L ++IR M NTP +VR+GA+V+ G+ A +D + + L SVG C EV E L+
Sbjct: 108 LMAFQPAPKVIRCMTNTPVVVREGATVYATGTHALVEDGKLLEQLMSSVGFCTEVEEDLI 167
Query: 279 DGITGLSGSGPAYRY 293
D ITGLSGSGPAY +
Sbjct: 168 DAITGLSGSGPAYAF 182
|
Housekeeping enzyme that catalyzes the last step in proline biosynthesis. In some cell types, such as erythrocytes, its primary function may be the generation of NADP(+). Can utilize both NAD and NADP. Has higher affinity for NADP, but higher catalytic efficiency with NADH. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q922Q4|P5CR2_MOUSE Pyrroline-5-carboxylate reductase 2 OS=Mus musculus GN=Pycr2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 87/135 (64%), Gaps = 3/135 (2%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
MG +T NK+ +S+V+ LAVKPHI+P L++I E ++++S A GV I ++E+
Sbjct: 48 MGVNLTRSNKDTVRHSDVLFLAVKPHIIPFILDEIGADVQERHIVVSCAAGVTISSVEKK 107
Query: 222 LPKNS---RIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLL 278
L ++IR M NTP +VR+GA+V+ G+ A +D + + L SVG C EV E L+
Sbjct: 108 LMAFQPAPKVIRCMTNTPVVVREGATVYATGTHALVEDGKLLEQLMSSVGFCTEVEEDLI 167
Query: 279 DGITGLSGSGPAYRY 293
D ITGLSGSGPAY +
Sbjct: 168 DAITGLSGSGPAYAF 182
|
Housekeeping enzyme that catalyzes the last step in proline biosynthesis. In some cell types, such as erythrocytes, its primary function may be the generation of NADP(+). Can utilize both NAD and NADP. Has higher affinity for NADP, but higher catalytic efficiency with NADH. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q9DCC4|P5CR3_MOUSE Pyrroline-5-carboxylate reductase 3 OS=Mus musculus GN=Pycrl PE=2 SV=2 | Back alignment and function description |
|---|
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 81/130 (62%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
+G + T N EV N ++I A KP ++P L ++ P+ ++++SVA G+ + ME
Sbjct: 54 LGCQTTHSNHEVLQNCPLVIFATKPQVLPTVLAEVAPIVTTEHIIVSVAAGISLSTMEGL 113
Query: 222 LPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDGI 281
LP N+R++R PN P +V++GA V RG A + DA+ + NL ++ G C EVPE +D
Sbjct: 114 LPPNTRVLRVSPNLPCVVQEGAMVMARGHHAGNDDAELLQNLLEACGQCIEVPESYVDIH 173
Query: 282 TGLSGSGPAY 291
TGLSGSG A+
Sbjct: 174 TGLSGSGVAF 183
|
Mus musculus (taxid: 10090) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q5PQJ6|P5CR3_RAT Pyrroline-5-carboxylate reductase 3 OS=Rattus norvegicus GN=Pycrl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 83/130 (63%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
+G + T N EV N ++I A KP ++P L ++ PV ++++SVA G+ + +ME+
Sbjct: 54 LGCQTTHSNHEVLQNCPLVIFATKPQVLPAVLAEVAPVVTTEHIIVSVAAGISLSSMEEL 113
Query: 222 LPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDGI 281
LP +R++R PN P +V++GA V RG A ++DA+ + NL ++ G C EVPE +D
Sbjct: 114 LPPKTRVLRVSPNLPCVVQEGAMVMTRGHHAGNEDAKLLQNLLEACGQCIEVPESYVDIH 173
Query: 282 TGLSGSGPAY 291
TGLSGSG A+
Sbjct: 174 TGLSGSGVAF 183
|
Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q53H96|P5CR3_HUMAN Pyrroline-5-carboxylate reductase 3 OS=Homo sapiens GN=PYCRL PE=1 SV=2 | Back alignment and function description |
|---|
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 82/130 (63%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
+G + T N+EV + ++I A KPH++P L ++ PV ++L+SVA GV + +E+
Sbjct: 54 LGCRTTHSNQEVLQSCLLVIFATKPHVLPAVLAEVAPVVTTEHILVSVAAGVSLSTLEEL 113
Query: 222 LPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDGI 281
LP N+R++R +PN P +V++GA V RG + + +L ++ G CEEVPE +D
Sbjct: 114 LPPNTRVLRVLPNLPCVVQEGAIVMARGRHVGSSETNLLQHLLEACGRCEEVPEAYVDIH 173
Query: 282 TGLSGSGPAY 291
TGLSGSG A+
Sbjct: 174 TGLSGSGVAF 183
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 303 | ||||||
| 91079134 | 279 | PREDICTED: similar to pyrroline-5-carbox | 0.455 | 0.494 | 0.557 | 7e-36 | |
| 321454186 | 275 | hypothetical protein DAPPUDRAFT_65532 [D | 0.435 | 0.48 | 0.537 | 1e-34 | |
| 332373662 | 276 | unknown [Dendroctonus ponderosae] | 0.452 | 0.496 | 0.528 | 8e-34 | |
| 241647500 | 281 | pyrroline-5-carboxylate reductase, putat | 0.435 | 0.469 | 0.515 | 3e-33 | |
| 242018398 | 271 | Pyrroline-5-carboxylate reductase, putat | 0.435 | 0.487 | 0.522 | 6e-33 | |
| 242247397 | 271 | pyrroline-5-carboxylate reductase 3-like | 0.442 | 0.494 | 0.525 | 6e-32 | |
| 260815383 | 268 | hypothetical protein BRAFLDRAFT_63455 [B | 0.435 | 0.492 | 0.477 | 8e-32 | |
| 291232897 | 288 | PREDICTED: pyrroline-5-carboxylate reduc | 0.442 | 0.465 | 0.477 | 2e-31 | |
| 110611286 | 247 | pyrroline-5-carboxylate reductase 1 [Glo | 0.481 | 0.591 | 0.476 | 2e-31 | |
| 357528295 | 237 | pyrroline-5-carboxylate reductase [Lepti | 0.455 | 0.582 | 0.503 | 3e-31 |
| >gi|91079134|ref|XP_975446.1| PREDICTED: similar to pyrroline-5-carboxylate reductase [Tribolium castaneum] gi|270004224|gb|EFA00672.1| hypothetical protein TcasGA2_TC003549 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 78/140 (55%), Positives = 99/140 (70%), Gaps = 2/140 (1%)
Query: 156 SKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPV--FNESNLLISVAGGV 213
+KA +GA+ F+N V S+VII++VKP +VP+AL DIK L +S+A GV
Sbjct: 47 AKAFKELGAESLFENVPVVKKSDVIIVSVKPSVVPIALGDIKKAADVKADKLFLSIAMGV 106
Query: 214 PIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEV 273
IK +EQ LP SR++R MPNTPALVR G SVFV GS A+++DA+T L ++VGTCE+V
Sbjct: 107 TIKQLEQFLPSESRVVRVMPNTPALVRSGTSVFVTGSRATEKDAETTKKLLQAVGTCEQV 166
Query: 274 PEYLLDGITGLSGSGPAYRY 293
PE LLD IT LSGSGPAY Y
Sbjct: 167 PEGLLDAITALSGSGPAYIY 186
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321454186|gb|EFX65367.1| hypothetical protein DAPPUDRAFT_65532 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/132 (53%), Positives = 92/132 (69%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
+G T +N +V +EV+I+A KP +VP L +I PV N +NL+IS+A G+P+ N+EQ
Sbjct: 54 IGCSTTHENAQVVEQAEVVIVATKPPLVPKVLTEINPVVNSNNLIISIAMGIPLINLEQM 113
Query: 222 LPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDGI 281
LP+ +R+IR MPNTP LVR GASVF G++ DA LF +VG CEEVPE L+D
Sbjct: 114 LPRKTRVIRIMPNTPVLVRSGASVFSCGTATRSGDATLTKKLFTAVGLCEEVPEVLIDAC 173
Query: 282 TGLSGSGPAYRY 293
TGLSGSGPAY Y
Sbjct: 174 TGLSGSGPAYMY 185
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332373662|gb|AEE61972.1| unknown [Dendroctonus ponderosae] | Back alignment and taxonomy information |
|---|
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 73/138 (52%), Positives = 98/138 (71%), Gaps = 1/138 (0%)
Query: 157 KATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPV-FNESNLLISVAGGVPI 215
KA +GA+ +N V S+++I++VKPHIVP+AL D+K ++ L +SVA GV I
Sbjct: 48 KAFKDLGAESITENIPVVQKSQIVIVSVKPHIVPIALGDLKDANIDDDKLYLSVAMGVTI 107
Query: 216 KNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPE 275
K +EQ LPK SR+IR MPNTPALV+ GASVFV+G+ A++ D L +S+GTCEEV E
Sbjct: 108 KQLEQILPKGSRVIRVMPNTPALVQSGASVFVKGNRATEGDTTIAKKLLQSIGTCEEVSE 167
Query: 276 YLLDGITGLSGSGPAYRY 293
++D +T LSGSGPAY Y
Sbjct: 168 GMMDAVTALSGSGPAYVY 185
|
Source: Dendroctonus ponderosae Species: Dendroctonus ponderosae Genus: Dendroctonus Family: Curculionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|241647500|ref|XP_002411149.1| pyrroline-5-carboxylate reductase, putative [Ixodes scapularis] gi|215503779|gb|EEC13273.1| pyrroline-5-carboxylate reductase, putative [Ixodes scapularis] | Back alignment and taxonomy information |
|---|
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/132 (51%), Positives = 92/132 (69%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
+G + T +NK + S+++ILA+KP +VP L ++ +L++S+A GV I +E
Sbjct: 52 LGCQTTHENKALVDGSDIVILALKPGVVPTVLQEVSTGVQSRHLVVSLAMGVTIGEIEGK 111
Query: 222 LPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDGI 281
LPK SR+IR MPNTP LVR+GASVF RGS+A+ D + V L SVG CEEVPE ++D +
Sbjct: 112 LPKRSRVIRVMPNTPCLVREGASVFARGSTATQSDGEEVRRLLTSVGLCEEVPEAMMDAV 171
Query: 282 TGLSGSGPAYRY 293
TGLSGSGPAY Y
Sbjct: 172 TGLSGSGPAYVY 183
|
Source: Ixodes scapularis Species: Ixodes scapularis Genus: Ixodes Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242018398|ref|XP_002429664.1| Pyrroline-5-carboxylate reductase, putative [Pediculus humanus corporis] gi|212514649|gb|EEB16926.1| Pyrroline-5-carboxylate reductase, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 97/132 (73%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
MGA FDNK V S+V+++AVKPHIVP AL+++K V +L++SVA GV ++++E+
Sbjct: 49 MGASAYFDNKIVVEKSDVVLVAVKPHIVPTALSEVKSVVTPKHLILSVAMGVTLEDLEKN 108
Query: 222 LPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDGI 281
LP +R++R MPNTPA+V++GASV+V G+SA+ +D L ++VGTCEE E LD +
Sbjct: 109 LPPKTRVVRVMPNTPAMVQKGASVYVPGTSATKEDGLMTKKLMEAVGTCEEAIESYLDPV 168
Query: 282 TGLSGSGPAYRY 293
T LSGSGPAY Y
Sbjct: 169 TALSGSGPAYVY 180
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242247397|ref|NP_001156103.1| pyrroline-5-carboxylate reductase 3-like [Acyrthosiphon pisum] gi|239787990|dbj|BAH70693.1| ACYPI002263 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 71/135 (52%), Positives = 95/135 (70%), Gaps = 1/135 (0%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNES-NLLISVAGGVPIKNMEQ 220
G+K+TFDN+ V N++V++LAVKP +V L+ I+P F S +LL+SVA GV + +E
Sbjct: 49 FGSKVTFDNQSVADNADVLLLAVKPSVVKTVLDQIRPNFTSSRHLLLSVAMGVTVNQLEN 108
Query: 221 ALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDG 280
LP SR++R MPNTPALV+ GASV+V G+ A+ +D + L SVGT E V EYL+D
Sbjct: 109 LLPDGSRVMRVMPNTPALVQCGASVYVPGNRATVEDEKLTAKLLSSVGTAERVQEYLMDP 168
Query: 281 ITGLSGSGPAYRYEV 295
IT LSGSGPAY Y +
Sbjct: 169 ITALSGSGPAYVYVI 183
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|260815383|ref|XP_002602453.1| hypothetical protein BRAFLDRAFT_63455 [Branchiostoma floridae] gi|229287762|gb|EEN58465.1| hypothetical protein BRAFLDRAFT_63455 [Branchiostoma floridae] | Back alignment and taxonomy information |
|---|
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 94/132 (71%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
+G + T +NKE NS++I L+VKPHI+P L +I PV + +L++SVA GVP++ +E+
Sbjct: 46 IGCQFTHNNKEAVENSDIIFLSVKPHILPGVLQEIAPVVTKRHLMVSVAAGVPLQFLEEK 105
Query: 222 LPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDGI 281
LP SR++R MPNTP +VRQGASV+V GS +D++ + +L S+G C E E ++ +
Sbjct: 106 LPPKSRVMRVMPNTPCVVRQGASVYVPGSHVEKEDSEIIKSLLSSLGYCSESNEGMISAV 165
Query: 282 TGLSGSGPAYRY 293
TGL+GSGPAY +
Sbjct: 166 TGLAGSGPAYAF 177
|
Source: Branchiostoma floridae Species: Branchiostoma floridae Genus: Branchiostoma Family: Branchiostomidae Order: Class: Phylum: Chordata Superkingdom: Eukaryota |
| >gi|291232897|ref|XP_002736390.1| PREDICTED: pyrroline-5-carboxylate reductase family, member 2-like [Saccoglossus kowalevskii] | Back alignment and taxonomy information |
|---|
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/134 (47%), Positives = 93/134 (69%)
Query: 160 GTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNME 219
G +G + T+DN + S ++ LAVKP+I+P L++I PV NE +L++S+A G+ I +E
Sbjct: 44 GRLGVRTTYDNMDAVKPSNIVFLAVKPNIMPAVLDEIAPVINERHLVVSLAAGITIDFLE 103
Query: 220 QALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLD 279
Q LP N+R+IR M NTP +V +GA+VF RGS+A D+ V F S+G C+E E +LD
Sbjct: 104 QKLPANARVIRVMCNTPCIVGEGATVFSRGSAAKQTDSIIVQKFFTSLGFCDEGDESILD 163
Query: 280 GITGLSGSGPAYRY 293
+TG+SGSGPAY +
Sbjct: 164 AVTGVSGSGPAYAF 177
|
Source: Saccoglossus kowalevskii Species: Saccoglossus kowalevskii Genus: Saccoglossus Family: Harrimaniidae Order: Class: Enteropneusta Phylum: Hemichordata Superkingdom: Eukaryota |
| >gi|110611286|gb|ABG77992.1| pyrroline-5-carboxylate reductase 1 [Glossina morsitans morsitans] | Back alignment and taxonomy information |
|---|
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 105/151 (69%), Gaps = 5/151 (3%)
Query: 147 ALIASLN----IVSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNE 202
ALIAS++ + ++ +G + N V NS+++ ++VKP +VP L ++KP+ ++
Sbjct: 33 ALIASVHPADTLSLESFQQLGVETIVKNDPVVNNSDIVFVSVKPQVVPEVLTEVKPI-SD 91
Query: 203 SNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVIN 262
+ L ISVA G+ IK +EQ L +R+IR MPNTPA+V+ G SVFVRG+ A++QDA+
Sbjct: 92 NKLFISVAMGITIKTLEQNLSPKARVIRVMPNTPAVVQSGCSVFVRGAKATEQDAKNTQA 151
Query: 263 LFKSVGTCEEVPEYLLDGITGLSGSGPAYRY 293
L +++GTCEEV EYLLD IT LSGSGPAY +
Sbjct: 152 LLEAIGTCEEVGEYLLDPITALSGSGPAYVF 182
|
Source: Glossina morsitans morsitans Species: Glossina morsitans Genus: Glossina Family: Glossinidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357528295|gb|AET80386.1| pyrroline-5-carboxylate reductase [Leptinotarsa decemlineata] | Back alignment and taxonomy information |
|---|
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/139 (50%), Positives = 97/139 (69%), Gaps = 1/139 (0%)
Query: 156 SKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIK-PVFNESNLLISVAGGVP 214
+KA +GA+ F+N V S+V+I++VKP +VP+AL++IK L +S+A GV
Sbjct: 47 AKAFKDLGAESVFENLPVVEKSDVVIVSVKPSVVPIALDEIKRSNIKTDKLFLSIAMGVS 106
Query: 215 IKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVP 274
+ +E+ LP +SR++RAMPNT AL+R ASVFV G +A++ D + NL SVGTCEEVP
Sbjct: 107 TRQLEKMLPSDSRVVRAMPNTAALIRNAASVFVTGKNATEADVEITKNLLDSVGTCEEVP 166
Query: 275 EYLLDGITGLSGSGPAYRY 293
E LLD +T LSGSGPAY +
Sbjct: 167 EGLLDPVTALSGSGPAYVF 185
|
Source: Leptinotarsa decemlineata Species: Leptinotarsa decemlineata Genus: Leptinotarsa Family: Chrysomelidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 303 | ||||||
| WB|WBGene00010924 | 279 | M153.1 [Caenorhabditis elegans | 0.438 | 0.476 | 0.488 | 4.9e-30 | |
| FB|FBgn0038516 | 273 | CG5840 [Drosophila melanogaste | 0.481 | 0.534 | 0.443 | 3.9e-28 | |
| ZFIN|ZDB-GENE-050522-26 | 362 | zgc:110655 "zgc:110655" [Danio | 0.435 | 0.364 | 0.451 | 1.7e-27 | |
| ZFIN|ZDB-GENE-040426-1675 | 320 | pycr1 "pyrroline-5-carboxylate | 0.435 | 0.412 | 0.459 | 4.5e-27 | |
| UNIPROTKB|B4DMU0 | 346 | PYCR1 "Pyrroline-5-carboxylate | 0.435 | 0.381 | 0.451 | 1.2e-26 | |
| UNIPROTKB|J3KQ22 | 253 | PYCR1 "Pyrroline-5-carboxylate | 0.435 | 0.521 | 0.451 | 1.2e-26 | |
| UNIPROTKB|J3QKT4 | 242 | PYCR1 "Pyrroline-5-carboxylate | 0.435 | 0.545 | 0.451 | 1.2e-26 | |
| UNIPROTKB|J3QL24 | 225 | PYCR1 "Pyrroline-5-carboxylate | 0.435 | 0.586 | 0.451 | 1.2e-26 | |
| UNIPROTKB|J3QL32 | 217 | PYCR1 "Pyrroline-5-carboxylate | 0.435 | 0.608 | 0.451 | 1.2e-26 | |
| UNIPROTKB|P32322 | 319 | PYCR1 "Pyrroline-5-carboxylate | 0.435 | 0.413 | 0.451 | 1.2e-26 |
| WB|WBGene00010924 M153.1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 66/135 (48%), Positives = 92/135 (68%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKP-HIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQ 220
+G T DN EV S+V+ LAVKP H+ VA ++I P ++ +L++S+A G+ I+N+E
Sbjct: 48 LGLNTTHDNAEVVQKSDVVFLAVKPVHVSKVA-SEIAPALSKEHLVVSIALGITIRNIES 106
Query: 221 ALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDG 280
LP SR++R MPNTP++VR GAS F GS+ D DA+TV L +VG EVPE +D
Sbjct: 107 LLPTKSRVVRVMPNTPSVVRAGASAFAMGSACRDGDAETVEKLLSTVGFAVEVPEIHIDP 166
Query: 281 ITGLSGSGPAYRYEV 295
+TGLSGSGP+Y + V
Sbjct: 167 VTGLSGSGPSYMFAV 181
|
|
| FB|FBgn0038516 CG5840 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 67/151 (44%), Positives = 94/151 (62%)
Query: 145 PGALIASLNIVSKAT----GTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVF 200
P LIAS++ K + ++G + N V S+V+ ++VKP +VP L++I+P+
Sbjct: 31 PNTLIASVHPADKLSLQSFQSLGVETVIKNAPVVQQSDVVFVSVKPQVVPSVLSEIQPL- 89
Query: 201 NESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTV 260
+ L +SVA G+ + +E +L +R+IR MPN PA+V G SVFVRGS A+D DA
Sbjct: 90 SSGKLFLSVAMGITLSTIESSLSPQARVIRVMPNLPAVVCSGCSVFVRGSKATDADADIT 149
Query: 261 INLFKSVGTCEEVPEYLLDGITGLSGSGPAY 291
L +SVGTCE V E LD +T LSGSGPAY
Sbjct: 150 QKLLQSVGTCEPVDESQLDVVTALSGSGPAY 180
|
|
| ZFIN|ZDB-GENE-050522-26 zgc:110655 "zgc:110655" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 61/135 (45%), Positives = 90/135 (66%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
MG +T NKE T S+V+ LAVKPHI+P L++I P + +L++S A GV I ++E+
Sbjct: 93 MGVNLTTSNKEATHRSDVLFLAVKPHIIPFVLDEIGPDIEDRHLIVSCAAGVTISSIEKK 152
Query: 222 L---PKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLL 278
L ++ +++R M NTP +VR+GA+V+ G+ A +D + + L SVG C EV E L+
Sbjct: 153 LLQYRESPKVMRCMTNTPVVVREGATVYATGTHAHLEDGKLLEQLMASVGFCTEVEEDLI 212
Query: 279 DGITGLSGSGPAYRY 293
D +TGLSGSGPAY +
Sbjct: 213 DAVTGLSGSGPAYAF 227
|
|
| ZFIN|ZDB-GENE-040426-1675 pycr1 "pyrroline-5-carboxylate reductase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 62/135 (45%), Positives = 88/135 (65%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
MGA T NKE S+V+ LAVKPHI+P L++I P + +L++S A GV I ++E+
Sbjct: 48 MGAFFTTSNKETVSKSDVLFLAVKPHIIPFVLDEIGPDIEDRHLIVSCAAGVTISSIEKK 107
Query: 222 LPKNS---RIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLL 278
L + ++IR M NTP +VR+GA+V+ G+ A +D + + L SVG C EV E L+
Sbjct: 108 LLQYRSAPKVIRCMTNTPVVVREGATVYATGTHAEVEDGKLLEQLMASVGYCTEVEEDLI 167
Query: 279 DGITGLSGSGPAYRY 293
D +TGLSGSGPAY +
Sbjct: 168 DAVTGLSGSGPAYAF 182
|
|
| UNIPROTKB|B4DMU0 PYCR1 "Pyrroline-5-carboxylate reductase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 61/135 (45%), Positives = 88/135 (65%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
MG K+T NKE +S+V+ LAVKPHI+P L++I + ++++S A GV I ++E+
Sbjct: 75 MGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKK 134
Query: 222 LPK---NSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLL 278
L R+IR M NTP +VR+GA+V+ G+ A +D + + L SVG C EV E L+
Sbjct: 135 LSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLI 194
Query: 279 DGITGLSGSGPAYRY 293
D +TGLSGSGPAY +
Sbjct: 195 DAVTGLSGSGPAYAF 209
|
|
| UNIPROTKB|J3KQ22 PYCR1 "Pyrroline-5-carboxylate reductase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 61/135 (45%), Positives = 88/135 (65%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
MG K+T NKE +S+V+ LAVKPHI+P L++I + ++++S A GV I ++E+
Sbjct: 48 MGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKK 107
Query: 222 LPK---NSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLL 278
L R+IR M NTP +VR+GA+V+ G+ A +D + + L SVG C EV E L+
Sbjct: 108 LSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLI 167
Query: 279 DGITGLSGSGPAYRY 293
D +TGLSGSGPAY +
Sbjct: 168 DAVTGLSGSGPAYAF 182
|
|
| UNIPROTKB|J3QKT4 PYCR1 "Pyrroline-5-carboxylate reductase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 61/135 (45%), Positives = 88/135 (65%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
MG K+T NKE +S+V+ LAVKPHI+P L++I + ++++S A GV I ++E+
Sbjct: 18 MGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKK 77
Query: 222 LPK---NSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLL 278
L R+IR M NTP +VR+GA+V+ G+ A +D + + L SVG C EV E L+
Sbjct: 78 LSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLI 137
Query: 279 DGITGLSGSGPAYRY 293
D +TGLSGSGPAY +
Sbjct: 138 DAVTGLSGSGPAYAF 152
|
|
| UNIPROTKB|J3QL24 PYCR1 "Pyrroline-5-carboxylate reductase 1, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 61/135 (45%), Positives = 88/135 (65%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
MG K+T NKE +S+V+ LAVKPHI+P L++I + ++++S A GV I ++E+
Sbjct: 48 MGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKK 107
Query: 222 LPK---NSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLL 278
L R+IR M NTP +VR+GA+V+ G+ A +D + + L SVG C EV E L+
Sbjct: 108 LSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLI 167
Query: 279 DGITGLSGSGPAYRY 293
D +TGLSGSGPAY +
Sbjct: 168 DAVTGLSGSGPAYAF 182
|
|
| UNIPROTKB|J3QL32 PYCR1 "Pyrroline-5-carboxylate reductase 1, isoform CRA_a" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 61/135 (45%), Positives = 88/135 (65%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
MG K+T NKE +S+V+ LAVKPHI+P L++I + ++++S A GV I ++E+
Sbjct: 48 MGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKK 107
Query: 222 LPK---NSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLL 278
L R+IR M NTP +VR+GA+V+ G+ A +D + + L SVG C EV E L+
Sbjct: 108 LSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLI 167
Query: 279 DGITGLSGSGPAYRY 293
D +TGLSGSGPAY +
Sbjct: 168 DAVTGLSGSGPAYAF 182
|
|
| UNIPROTKB|P32322 PYCR1 "Pyrroline-5-carboxylate reductase 1, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 61/135 (45%), Positives = 88/135 (65%)
Query: 162 MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
MG K+T NKE +S+V+ LAVKPHI+P L++I + ++++S A GV I ++E+
Sbjct: 48 MGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKK 107
Query: 222 LPK---NSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLL 278
L R+IR M NTP +VR+GA+V+ G+ A +D + + L SVG C EV E L+
Sbjct: 108 LSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLI 167
Query: 279 DGITGLSGSGPAYRY 293
D +TGLSGSGPAY +
Sbjct: 168 DAVTGLSGSGPAYAF 182
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 1.5.1.2 | LOW CONFIDENCE prediction! |
| 3rd Layer | 1.5.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 303 | |||
| PLN02688 | 266 | PLN02688, PLN02688, pyrroline-5-carboxylate reduct | 1e-42 | |
| PRK11880 | 267 | PRK11880, PRK11880, pyrroline-5-carboxylate reduct | 5e-41 | |
| TIGR00112 | 245 | TIGR00112, proC, pyrroline-5-carboxylate reductase | 5e-41 | |
| COG0345 | 266 | COG0345, ProC, Pyrroline-5-carboxylate reductase [ | 3e-38 | |
| PTZ00431 | 260 | PTZ00431, PTZ00431, pyrroline carboxylate reductas | 4e-27 | |
| PRK07679 | 279 | PRK07679, PRK07679, pyrroline-5-carboxylate reduct | 5e-27 | |
| PRK12491 | 272 | PRK12491, PRK12491, pyrroline-5-carboxylate reduct | 9e-25 | |
| PRK07634 | 245 | PRK07634, PRK07634, pyrroline-5-carboxylate reduct | 4e-15 | |
| PRK07680 | 273 | PRK07680, PRK07680, late competence protein ComER; | 8e-10 | |
| pfam03807 | 93 | pfam03807, F420_oxidored, NADP oxidoreductase coen | 1e-04 | |
| PRK06928 | 277 | PRK06928, PRK06928, pyrroline-5-carboxylate reduct | 5e-04 |
| >gnl|CDD|178291 PLN02688, PLN02688, pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 1e-42
Identities = 58/133 (43%), Positives = 84/133 (63%), Gaps = 1/133 (0%)
Query: 161 TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQ 220
++G K N EV +S+VIILAVKP +V L +++P+ ++ LL+SVA G+ + ++++
Sbjct: 46 SLGVKTAASNTEVVKSSDVIILAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQE 105
Query: 221 ALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDG 280
R++R MPNTP LV + ASV G +A+ D V LF +VG V E LLD
Sbjct: 106 WAGGR-RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGKIWVVDEKLLDA 164
Query: 281 ITGLSGSGPAYRY 293
+TGLSGSGPAY +
Sbjct: 165 VTGLSGSGPAYIF 177
|
Length = 266 |
| >gnl|CDD|237008 PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 142 bits (362), Expect = 5e-41
Identities = 47/130 (36%), Positives = 76/130 (58%), Gaps = 3/130 (2%)
Query: 163 GAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQAL 222
G + DN+E ++V++LAVKP ++ L+++K + L++S+A GV + +E+ L
Sbjct: 49 GVRAATDNQEAAQEADVVVLAVKPQVMEEVLSELKGQLD--KLVVSIAAGVTLARLERLL 106
Query: 223 PKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVP-EYLLDGI 281
+ ++RAMPNTPALV G + + S +D + V NL + G V E +D +
Sbjct: 107 GADLPVVRAMPNTPALVGAGMTALTANALVSAEDRELVENLLSAFGKVVWVDDEKQMDAV 166
Query: 282 TGLSGSGPAY 291
T +SGSGPAY
Sbjct: 167 TAVSGSGPAY 176
|
Length = 267 |
| >gnl|CDD|232829 TIGR00112, proC, pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 5e-41
Identities = 52/135 (38%), Positives = 80/135 (59%)
Query: 161 TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQ 220
+G + D +E ++V+ LAVKP + L+++K + LLIS+A GV ++ + Q
Sbjct: 28 ELGIVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKLSQ 87
Query: 221 ALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDG 280
L R++R MPNTPA V G + ++ S++D V+ LFK+VG E+PE L+D
Sbjct: 88 LLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDA 147
Query: 281 ITGLSGSGPAYRYEV 295
+T LSGSGPAY +
Sbjct: 148 VTALSGSGPAYVFLF 162
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs [Amino acid biosynthesis, Glutamate family]. Length = 245 |
| >gnl|CDD|223422 COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 3e-38
Identities = 54/135 (40%), Positives = 79/135 (58%), Gaps = 2/135 (1%)
Query: 161 TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQ 220
G T DN+E ++V+ LAVKP + L+ +KP+ + L+IS+A GV I+ +E+
Sbjct: 47 EYGVVTTTDNQEAVEEADVVFLAVKPQDLEEVLSKLKPLTKDK-LVISIAAGVSIETLER 105
Query: 221 ALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDG 280
L R++R MPNTPALV G + ++ S++D V L +VG EV E L+D
Sbjct: 106 LLG-GLRVVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGKVVEVEESLMDA 164
Query: 281 ITGLSGSGPAYRYEV 295
+T LSGSGPAY +
Sbjct: 165 VTALSGSGPAYVFLF 179
|
Length = 266 |
| >gnl|CDD|173621 PTZ00431, PTZ00431, pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 4e-27
Identities = 49/124 (39%), Positives = 78/124 (62%), Gaps = 1/124 (0%)
Query: 170 NKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRII 229
N+E+ ++I+LAVKP + L +IKP S LLIS+ GG+ +K +E+ + ++I+
Sbjct: 51 NEELAKTCDIIVLAVKPDLAGKVLLEIKPYLG-SKLLISICGGLNLKTLEEMVGVEAKIV 109
Query: 230 RAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDGITGLSGSGP 289
R MPNTP+LV QG+ VF ++ D + VI++F + G +E+ E +D T +SG GP
Sbjct: 110 RVMPNTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGIIQEIKEKDMDIATAISGCGP 169
Query: 290 AYRY 293
AY +
Sbjct: 170 AYVF 173
|
Length = 260 |
| >gnl|CDD|181079 PRK07679, PRK07679, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 5e-27
Identities = 49/135 (36%), Positives = 73/135 (54%)
Query: 161 TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQ 220
G K T + KE+ ++ ++ LA+KP V AL K + + L+IS+ GV ++
Sbjct: 50 KYGVKGTHNKKELLTDANILFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN 109
Query: 221 ALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDG 280
L K+ IIRAMPNT A + + A+ A+ + QT LF+++G V E +
Sbjct: 110 LLQKDVPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFETIGLVSVVEEEDMHA 169
Query: 281 ITGLSGSGPAYRYEV 295
+T LSGSGPAY Y V
Sbjct: 170 VTALSGSGPAYIYYV 184
|
Length = 279 |
| >gnl|CDD|105695 PRK12491, PRK12491, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 100 bits (249), Expect = 9e-25
Identities = 53/152 (34%), Positives = 86/152 (56%), Gaps = 3/152 (1%)
Query: 145 PGALIAS-LNIVS--KATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFN 201
P +I S LN+ + A+ G IT +N EV +++++IL++KP + +N IK
Sbjct: 29 PDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSVINQIKDQIK 88
Query: 202 ESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVI 261
+++++A G IK+ E + ++IR MPNTP LV +G S +++D + V+
Sbjct: 89 NDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVL 148
Query: 262 NLFKSVGTCEEVPEYLLDGITGLSGSGPAYRY 293
N+F G E V E L+D +T +SGS PAY Y
Sbjct: 149 NIFNIFGQTEVVNEKLMDVVTSISGSSPAYVY 180
|
Length = 272 |
| >gnl|CDD|181063 PRK07634, PRK07634, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 4e-15
Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Query: 161 TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQ 220
T D K+ + + I+LA+ P L ++ P+ + + L+++VA G+ +E+
Sbjct: 51 RYNVSTTTDWKQHVTSVDTIVLAMPPSAHEELLAELSPLLS-NQLVVTVAAGIGPSYLEE 109
Query: 221 ALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDG 280
LPK + + MPNT A + + S++ G S ++ +T+ + K +GT + E +
Sbjct: 110 RLPKGTPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQLCTEEEVHQ 169
Query: 281 ITGLSGSGPAYRYE 294
+T ++GS PA+ Y
Sbjct: 170 LTAVTGSAPAFLYY 183
|
Length = 245 |
| >gnl|CDD|181080 PRK07680, PRK07680, late competence protein ComER; Validated | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 8e-10
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 163 GAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQAL 222
G + +EV S++I + VKP + L + P + + L+S+ + ++ +E +
Sbjct: 49 GIHVAKTIEEVISQSDLIFICVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLV 108
Query: 223 PKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDGIT 282
P ++ R +P+ GAS+F GS S++D Q + LF ++ T P + + IT
Sbjct: 109 P--CQVARIIPSITNRALSGASLFTFGSRCSEEDQQKLERLFSNIST----PLVIEEDIT 162
Query: 283 ----GLSGSGPAY 291
+ GPA+
Sbjct: 163 RVSSDIVSCGPAF 175
|
Length = 273 |
| >gnl|CDD|202773 pfam03807, F420_oxidored, NADP oxidoreductase coenzyme F420-dependent | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 1e-04
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 129 RWNRSDKQIAGTTERGPGALIASLNIVSKATGTMGAKIT-FDNKEVTLNSEVIILAVKPH 187
+ ++ R P A + G K T N+E ++V+ LAVKP
Sbjct: 17 GLAAAGHEVVIANSRNPEKAAALAEEL-------GVKATAVSNEEAVEEADVVFLAVKPE 69
Query: 188 IVPVALNDIKPVFNESNLLISVAGG 212
P L ++ + L+IS+ G
Sbjct: 70 DAPEVLAELADLLKGK-LVISITNG 93
|
Length = 93 |
| >gnl|CDD|235888 PRK06928, PRK06928, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%)
Query: 170 NKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRII 229
E+ + + V P V L D PV ++S+A GV + ++ + P +
Sbjct: 58 EAEIFTKCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQ-VS 116
Query: 230 RAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDGITGLSGSGP 289
R +P+ + V G S+ + ++ + + + E +D + L+ S P
Sbjct: 117 RLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSHVMTIREENMDIASNLTSSSP 176
Query: 290 AY 291
+
Sbjct: 177 GF 178
|
Length = 277 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 303 | |||
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 100.0 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 100.0 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.97 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.97 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.96 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.96 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.96 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.95 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 99.95 | |
| KOG3124|consensus | 267 | 99.94 | ||
| PRK07680 | 273 | late competence protein ComER; Validated | 99.94 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.94 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.9 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.77 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.77 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.76 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.76 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.75 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.7 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.69 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.69 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.68 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.65 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.63 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.63 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.53 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.53 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.53 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.5 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.48 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.47 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.47 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.46 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.44 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.41 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.4 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.36 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.35 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.35 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 99.33 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.33 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.29 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.27 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.27 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.26 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.26 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.25 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.23 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.23 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.22 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.22 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.2 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.2 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.19 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.18 | |
| KOG0409|consensus | 327 | 99.18 | ||
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.17 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.16 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.15 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.14 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.13 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.12 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.11 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 99.1 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.09 | |
| KOG2380|consensus | 480 | 99.09 | ||
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.07 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.04 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.02 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.91 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.89 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 98.88 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 98.85 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 98.84 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.83 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 98.82 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.81 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.79 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 98.78 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 98.74 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 98.69 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 98.65 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 98.62 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 98.58 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 98.55 | |
| KOG2711|consensus | 372 | 98.54 | ||
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.54 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.46 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 98.35 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 98.22 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 98.22 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 98.22 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 98.22 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 98.18 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 98.16 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 98.13 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 98.09 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 98.05 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.03 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.02 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 97.99 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 97.94 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 97.93 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 97.88 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 97.83 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 97.83 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 97.76 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 97.75 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 97.68 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 97.59 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 97.59 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 97.57 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.54 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.53 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 97.52 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 97.5 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 97.49 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 97.46 | |
| PLN02928 | 347 | oxidoreductase family protein | 97.46 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 97.45 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 97.45 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 97.44 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 97.42 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.42 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 97.41 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 97.39 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 97.33 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.3 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 97.27 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 97.24 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.21 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 97.2 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 97.2 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.17 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 97.15 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.14 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.12 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.11 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.08 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 97.04 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 97.02 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 97.01 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 96.95 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 96.9 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 96.88 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.87 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 96.83 | |
| KOG0069|consensus | 336 | 96.73 | ||
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 96.72 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 96.66 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 96.66 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.63 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 96.62 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 96.55 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.54 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.49 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 96.4 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.4 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 96.37 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.35 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 96.3 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 96.29 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 96.25 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 96.2 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 96.18 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 96.05 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 95.98 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 95.97 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 95.96 | |
| KOG2653|consensus | 487 | 95.95 | ||
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 95.93 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 95.8 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 95.64 | |
| KOG2304|consensus | 298 | 95.64 | ||
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 95.63 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 95.57 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 95.52 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 95.48 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 95.47 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 95.38 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 95.36 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 95.3 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 95.22 | |
| PLN02602 | 350 | lactate dehydrogenase | 95.19 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 94.97 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 94.9 | |
| COG4074 | 343 | Mth H2-forming N5,N10-methylenetetrahydromethanopt | 94.89 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 94.88 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 94.86 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 94.86 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 94.73 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 94.73 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 94.7 | |
| KOG2305|consensus | 313 | 94.67 | ||
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 94.61 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 94.6 | |
| KOG2666|consensus | 481 | 94.53 | ||
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 94.5 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 94.49 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 94.41 | |
| KOG0068|consensus | 406 | 94.38 | ||
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 94.34 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 94.22 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 94.1 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 93.98 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 93.92 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 93.88 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 93.7 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 93.59 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 93.55 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 93.42 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 93.41 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 93.39 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 93.39 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 93.31 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 93.2 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 93.17 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 93.13 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 93.11 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 93.1 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 93.07 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 92.86 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 92.85 | |
| PLN02494 | 477 | adenosylhomocysteinase | 92.81 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 92.79 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 92.76 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 92.69 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 92.67 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 92.62 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 92.61 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 92.38 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 92.36 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 92.35 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.22 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 92.12 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 92.06 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 92.05 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 92.04 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 91.91 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 91.87 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 91.65 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 91.64 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 91.3 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 91.23 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 90.89 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 90.65 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.48 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 90.4 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 90.35 | |
| PLN00106 | 323 | malate dehydrogenase | 90.21 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 90.07 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 90.03 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 89.97 | |
| COG4408 | 431 | Uncharacterized protein conserved in bacteria [Fun | 89.91 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 89.89 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 89.79 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.67 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 89.58 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.13 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 89.12 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 88.78 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 88.65 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 88.63 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 88.51 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 88.34 | |
| CHL00188 | 210 | hisH imidazole glycerol phosphate synthase subunit | 88.17 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 88.11 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 88.02 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 87.71 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 87.45 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 87.33 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 87.32 | |
| KOG2741|consensus | 351 | 87.17 | ||
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 86.93 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 86.82 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 86.77 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 86.41 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 86.33 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 86.0 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.93 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 85.85 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 85.73 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.6 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 85.47 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.41 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 85.39 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 85.21 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 85.2 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 85.11 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.11 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 84.87 | |
| PRK06813 | 346 | homoserine dehydrogenase; Validated | 84.8 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 84.74 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 84.67 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.6 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 84.5 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.2 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.09 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.05 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 83.86 | |
| PRK13146 | 209 | hisH imidazole glycerol phosphate synthase subunit | 83.45 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 83.16 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 83.05 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 82.99 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 82.72 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 82.42 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 82.23 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 82.18 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 82.16 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 81.97 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 81.95 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 81.92 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 81.89 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 81.82 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 81.62 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 81.6 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 81.43 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 81.43 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 81.11 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 80.86 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 80.55 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 80.49 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 80.41 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 80.13 | |
| COG0118 | 204 | HisH Glutamine amidotransferase [Amino acid transp | 80.03 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 80.03 |
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=271.89 Aligned_cols=168 Identities=35% Similarity=0.524 Sum_probs=150.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHh-------------hcHHH----HhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLN-------------IVSKA----TGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~-------------r~~e~----l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
+|||||||.|+||.+++...++ +..++ ..++|+..+.++.++++++|+|||||||+++++||.
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKPq~~~~vl~ 80 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKPQDLEEVLS 80 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeChHhHHHHHH
Confidence 5899999999999954332221 22222 336788766777899999999999999999999999
Q ss_pred hhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEcC
Q psy6714 195 DIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVP 274 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~vd 274 (303)
++++ +.++++|||+++|++++.|+.+++ +.+++|+|||+|+.++.|++.++++.++++++.+.+.+||+.+|.+++|+
T Consensus 81 ~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~v~~v~ 158 (266)
T COG0345 81 KLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGKVVEVE 158 (266)
T ss_pred Hhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCCeEEec
Confidence 9998 778999999999999999999999 68999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 275 EYLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 275 E~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
|++||++||++||||||+|+|+|+|+.
T Consensus 159 E~~~da~TaisGSgPAyv~~~iEal~~ 185 (266)
T COG0345 159 ESLMDAVTALSGSGPAYVFLFIEALAD 185 (266)
T ss_pred hHHhhHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999974
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=269.78 Aligned_cols=169 Identities=30% Similarity=0.515 Sum_probs=150.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHh--------------hcHH---HHh-hCCCeEecChHHhhcCCCEEEEeeCCccHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLN--------------IVSK---ATG-TMGAKITFDNKEVTLNSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~--------------r~~e---~l~-e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL 193 (303)
.|||+|||+|+||.+ ++..+. +..+ .+. ++|+.++.++.+++++||+|||||||+++.+|+
T Consensus 2 ~~~IgfIG~G~MG~a-ia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl 80 (272)
T PRK12491 2 NKQIGFIGCGNMGIA-MIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSVI 80 (272)
T ss_pred CCeEEEECccHHHHH-HHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeChHHHHHHH
Confidence 468999999999994 554321 1122 233 378877788888999999999999999999999
Q ss_pred HhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEc
Q psy6714 194 NDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEV 273 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~v 273 (303)
+++.++++++++|||+++|++++.|++.++...+++|+|||+|+.+++|++.+++++..++++++.+++||+.+|.++++
T Consensus 81 ~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~~ 160 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQTEVV 160 (272)
T ss_pred HHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCCEEEE
Confidence 99998888888999999999999999999755689999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 274 PEYLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 274 dE~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
+|+++|+++|++||||||+|+|+|+|+.
T Consensus 161 ~E~~~d~~talsgsgPAf~~~~~eal~~ 188 (272)
T PRK12491 161 NEKLMDVVTSISGSSPAYVYMFIEAMAD 188 (272)
T ss_pred cHHHhhhHHHhccCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999874
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=247.00 Aligned_cols=168 Identities=15% Similarity=0.224 Sum_probs=146.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh--------------c-HHHH---h-hC-CCeEecChHHhhcCCCEEEEeeCCccHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI--------------V-SKAT---G-TM-GAKITFDNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r--------------~-~e~l---~-e~-Gv~v~~d~~eav~~ADIVILAVpP~~v~~ 191 (303)
||||+|||+|+||. .++..+.+ . .+++ . .. ++.+..++.++++++|+|||||||+.+.+
T Consensus 1 m~~I~iIG~G~mG~-ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~~~~ 79 (277)
T PRK06928 1 MEKIGFIGYGSMAD-MIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLAVLP 79 (277)
T ss_pred CCEEEEECccHHHH-HHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHHHHH
Confidence 57899999999999 45544211 1 1111 1 23 34556778888899999999999999999
Q ss_pred HHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcE
Q psy6714 192 ALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCE 271 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v 271 (303)
++.++.+++.++++|||+++|++++.|++.++. .+++|+|||+|+.++.|++.++++++.++++++.++.||+.+|.++
T Consensus 80 vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~ 158 (277)
T PRK06928 80 LLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSHVM 158 (277)
T ss_pred HHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCCEE
Confidence 999999888788899999999999999999974 6899999999999999999999988999999999999999999999
Q ss_pred EcCCCCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 272 EVPEYLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 272 ~vdE~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
+++|+++|+++|++||||||+|+|+|+|+.
T Consensus 159 ~v~E~~~d~~tal~gsgPA~~~~~~~al~~ 188 (277)
T PRK06928 159 TIREENMDIASNLTSSSPGFIAAIFEEFAE 188 (277)
T ss_pred EEchhhCceeeeeecCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999974
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-31 Score=243.45 Aligned_cols=169 Identities=31% Similarity=0.511 Sum_probs=145.8
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcH----HH-------HhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccc
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNIVS----KA-------TGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPV 199 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r~~----e~-------l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~ 199 (303)
+.|||+|||+|+||+ +++..+.+.. +. ....++....++.++++++|+|||||||+++.+++.++.++
T Consensus 2 ~~mkI~iIG~G~mG~-ai~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~D~Vilavkp~~~~~vl~~i~~~ 80 (260)
T PTZ00431 2 ENIRVGFIGLGKMGS-ALAYGIENSNIIGKENIYYHTPSKKNTPFVYLQSNEELAKTCDIIVLAVKPDLAGKVLLEIKPY 80 (260)
T ss_pred CCCEEEEECccHHHH-HHHHHHHhCCCCCcceEEEECCChhcCCeEEeCChHHHHHhCCEEEEEeCHHHHHHHHHHHHhh
Confidence 358999999999999 5665543211 10 11234555677888889999999999999999999999987
Q ss_pred cCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEcCCCCch
Q psy6714 200 FNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLD 279 (303)
Q Consensus 200 L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~vdE~~~D 279 (303)
+. +++|||+++|++.+.++..++....++|+|||+|..++.|.+++++.++.++++.+.++++|+.+|.+++++|+++|
T Consensus 81 l~-~~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~~~d 159 (260)
T PTZ00431 81 LG-SKLLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGIIQEIKEKDMD 159 (260)
T ss_pred cc-CCEEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCcEEEEChHHcc
Confidence 75 46889999999999999998755678999999999999999999998888999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHhhhh
Q psy6714 280 GITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 280 a~tAlsGsgPAf~~~~ie~~~~ 301 (303)
++++++||||||+|+|+++|+.
T Consensus 160 ~~ta~~gsgPA~~~~~~~al~~ 181 (260)
T PTZ00431 160 IATAISGCGPAYVFLFIESLID 181 (260)
T ss_pred hhhhhcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999874
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=228.87 Aligned_cols=168 Identities=31% Similarity=0.438 Sum_probs=148.3
Q ss_pred CCcEEEEcCChhhHHHHHHHH-h-------------hcH-HH---Hh-hCCCeEecChHHhhcCCCEEEEeeCCccHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASL-N-------------IVS-KA---TG-TMGAKITFDNKEVTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-~-------------r~~-e~---l~-e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~V 192 (303)
.|||+|||+|+||.+ ++..+ + +.. ++ +. ++|+.+..++.+++++||+|||||||+++.++
T Consensus 3 ~mkI~~IG~G~mG~a-ia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~~v 81 (279)
T PRK07679 3 IQNISFLGAGSIAEA-IIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVAEA 81 (279)
T ss_pred CCEEEEECccHHHHH-HHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHHHH
Confidence 579999999999995 44432 1 111 12 22 35888888888899999999999999999999
Q ss_pred HHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEE
Q psy6714 193 LNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEE 272 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~ 272 (303)
+.++.+.++++++|||+++|++.+.++++++.+.+|+|.|||++..++++.+++++++..++++++.+++||+.+|.+++
T Consensus 82 l~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~ 161 (279)
T PRK07679 82 LIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFETIGLVSV 161 (279)
T ss_pred HHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEeeCCCCCHHHHHHHHHHHHhCCcEEE
Confidence 99998888788999999999999999998876678999999999999999999999888889999999999999999999
Q ss_pred cCCCCchhhhhhccchHHHHHHHHHhhh
Q psy6714 273 VPEYLLDGITGLSGSGPAYRYEVTSNEV 300 (303)
Q Consensus 273 vdE~~~Da~tAlsGsgPAf~~~~ie~~~ 300 (303)
++|+++|++++++||||||++.++++|.
T Consensus 162 v~e~~~~~~~a~~Gsgpa~~~~~~eal~ 189 (279)
T PRK07679 162 VEEEDMHAVTALSGSGPAYIYYVVEAME 189 (279)
T ss_pred eCHHHhhhHHHhhcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999986
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-28 Score=219.13 Aligned_cols=168 Identities=23% Similarity=0.389 Sum_probs=146.1
Q ss_pred CCcEEEEcCChhhHHHHHHHH--------------hh-cHHHH---h-hCCCeEecChHHhhcCCCEEEEeeCCccHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASL--------------NI-VSKAT---G-TMGAKITFDNKEVTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al--------------~r-~~e~l---~-e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~V 192 (303)
.|||+|||+|.||.. ++..+ ++ ..+++ . ++|+..+.++.++++++|+||+||||+.+.++
T Consensus 4 ~~kI~iIG~G~mg~a-la~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~~~~v 82 (245)
T PRK07634 4 KHRILFIGAGRMAEA-IFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSAHEEL 82 (245)
T ss_pred CCeEEEECcCHHHHH-HHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHHHHHH
Confidence 478999999999994 54331 11 11222 2 35777778888889999999999999999999
Q ss_pred HHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEE
Q psy6714 193 LNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEE 272 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~ 272 (303)
++++.++++ +++|||+++|++++.|++.++.+..++++|||++.+++.|.+.+++..+.++++.+.+++||+.+|.+++
T Consensus 83 ~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~~~ 161 (245)
T PRK07634 83 LAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQL 161 (245)
T ss_pred HHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 999988774 6799999999999999999986668999999999999999999988888899999999999999999999
Q ss_pred cCCCCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 273 VPEYLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 273 vdE~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
++|+++|.++|++||+|||+|+|+++++.
T Consensus 162 ~~e~~~~~~~a~~gs~pa~~~~~~~a~~~ 190 (245)
T PRK07634 162 CTEEEVHQLTAVTGSAPAFLYYFAESLIE 190 (245)
T ss_pred ECHHHcchHHhhhcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999863
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=220.93 Aligned_cols=167 Identities=36% Similarity=0.553 Sum_probs=146.7
Q ss_pred CcEEEEcCChhhHHHHHHHH---------------hhcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 133 SDKQIAGTTERGPGALIASL---------------NIVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al---------------~r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
|||+|||+|+||.+ ++..+ ++..+ .+.+.|+.+..++.+++++||+||+||||+++.+++.
T Consensus 1 ~kI~~IG~G~mG~a-~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~ 79 (266)
T PLN02688 1 FRVGFIGAGKMAEA-IARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVKPQVVKDVLT 79 (266)
T ss_pred CeEEEECCcHHHHH-HHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEECcHHHHHHHH
Confidence 78999999999995 44331 22222 2446789888888899999999999999999999999
Q ss_pred hhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEcC
Q psy6714 195 DIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVP 274 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~vd 274 (303)
++.+.+.++++|||+++|++.+.+++.++. .+++++|||+|..++.+.+.++++...++++++.+++||+.+|.+++++
T Consensus 80 ~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~-~~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~~~~~~ 158 (266)
T PLN02688 80 ELRPLLSKDKLLVSVAAGITLADLQEWAGG-RRVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGKIWVVD 158 (266)
T ss_pred HHHhhcCCCCEEEEecCCCcHHHHHHHcCC-CCEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCCEEEeC
Confidence 998878888999999999999999998874 3799999999999999999999888889999999999999999977889
Q ss_pred CCCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 275 EYLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 275 E~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
|++||.+++++||||||+|.+++++..
T Consensus 159 e~~~d~~~~~~g~g~a~~~~~~~a~~e 185 (266)
T PLN02688 159 EKLLDAVTGLSGSGPAYIFLAIEALAD 185 (266)
T ss_pred HHHcchhHhhhcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999863
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=220.56 Aligned_cols=168 Identities=31% Similarity=0.481 Sum_probs=145.8
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh-------------hcHH---HHhh-CCCeEecChHHhhcCCCEEEEeeCCccHHHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN-------------IVSK---ATGT-MGAKITFDNKEVTLNSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~-------------r~~e---~l~e-~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL 193 (303)
+||||+|||+|.||. .++..+. +..+ .+.+ +|+.+..++.++++++|+|||||||+++.+++
T Consensus 1 ~mm~I~iIG~G~mG~-~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~~~~v~ 79 (267)
T PRK11880 1 MMKKIGFIGGGNMAS-AIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQVMEEVL 79 (267)
T ss_pred CCCEEEEEechHHHH-HHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHHHHHHH
Confidence 478999999999999 5655421 1122 2333 47877788888889999999999999999999
Q ss_pred HhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEc
Q psy6714 194 NDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEV 273 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~v 273 (303)
+++.+++ +++|||+++|++.+.++..++.+.+++++|||+|..++.+.++++++...+++.++.++.||+.+|.++++
T Consensus 80 ~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~lG~~~~~ 157 (267)
T PRK11880 80 SELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANALVSAEDRELVENLLSAFGKVVWV 157 (267)
T ss_pred HHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCCCCCHHHHHHHHHHHHhCCeEEEE
Confidence 9998876 57899999999999999998755789999999999999999999988888999999999999999998888
Q ss_pred C-CCCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 274 P-EYLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 274 d-E~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
+ |++||++++++||+|||+++|++++..
T Consensus 158 ~~e~~~d~~~a~~~~~pa~~~~~~~~~~~ 186 (267)
T PRK11880 158 DDEKQMDAVTAVSGSGPAYVFLFIEALAD 186 (267)
T ss_pred CChHhcchHHHHhcChHHHHHHHHHHHHH
Confidence 6 999999999999999999999998863
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=220.22 Aligned_cols=142 Identities=37% Similarity=0.593 Sum_probs=133.0
Q ss_pred hhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhh
Q psy6714 160 GTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALV 239 (303)
Q Consensus 160 ~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v 239 (303)
.++|+.+..++.++++++|+|||||||+++.+++.++.+.+.++++|||+++|++++.|+++++.+.+++|+|||++..+
T Consensus 27 ~~~g~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~ 106 (245)
T TIGR00112 27 KELGIVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKV 106 (245)
T ss_pred HHcCcEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHH
Confidence 35688888889999999999999999999999999998877778899999999999999999976568999999999999
Q ss_pred hCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEcCCCCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 240 RQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 240 ~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~vdE~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
++|+++++++.+.++++.+.+++||+.+|.+++++|+++|.+++++||||||+|+|+++|..
T Consensus 107 ~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~~talsgsgPA~~~~~~~al~~ 168 (245)
T TIGR00112 107 GAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDAVTALSGSGPAYVFLFIEALAD 168 (245)
T ss_pred hCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchHHhhccCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999864
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >KOG3124|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.6e-27 Score=213.92 Aligned_cols=168 Identities=37% Similarity=0.617 Sum_probs=151.1
Q ss_pred CcEEEEcCChhhHHHHHHHH-----------------hhcHHH-HhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 133 SDKQIAGTTERGPGALIASL-----------------NIVSKA-TGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al-----------------~r~~e~-l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
|++||||.|+|.. +++..+ .+.... +...|++.+.++.++++.+|++|+||||+.+.+++.
T Consensus 1 ~~~gfigag~ma~-ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svKp~~i~~vls 79 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQ-ALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVKPQVIESVLS 79 (267)
T ss_pred CceeEechhhhHH-HHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeecchhHHHHhh
Confidence 7899999999998 455431 111122 667899888888999999999999999999999999
Q ss_pred hhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEcC
Q psy6714 195 DIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVP 274 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~vd 274 (303)
+++..+..++||||+++|++++.++..++...+++|.|||+|+.++.|.++++.+.+...++.+.+++||+.+|.+.+++
T Consensus 80 ~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~vG~~~evp 159 (267)
T KOG3124|consen 80 EIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCHATNEDLELVEELLSAVGLCEEVP 159 (267)
T ss_pred cCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCCcchhhHHHHHHHHHhcCcceeCc
Confidence 99876778899999999999999999998667899999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 275 EYLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 275 E~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
|+.+|++|+++||||||.|.++|+|..
T Consensus 160 E~~iDavTgLsGSgPAy~f~~ieaLad 186 (267)
T KOG3124|consen 160 EKCIDAVTGLSGSGPAYVFVAIEALAD 186 (267)
T ss_pred HHhhhHHhhccCCcHHHHHHHHHHHhc
Confidence 999999999999999999999999864
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-26 Score=213.21 Aligned_cols=166 Identities=22% Similarity=0.353 Sum_probs=143.8
Q ss_pred CcEEEEcCChhhHHHHHHHHh--------------hcHHH---Hhh-C-CCeEecChHHhhcCCCEEEEeeCCccHHHHH
Q psy6714 133 SDKQIAGTTERGPGALIASLN--------------IVSKA---TGT-M-GAKITFDNKEVTLNSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~--------------r~~e~---l~e-~-Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL 193 (303)
|+|+|||+|+||. .++..+. +..++ +.+ . |+.+..++.++++++|+|||||||+++.+++
T Consensus 1 m~I~iIG~G~mG~-ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGT-ILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLDIYPLL 79 (273)
T ss_pred CEEEEECccHHHH-HHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHHHHHHH
Confidence 6899999999999 4554421 12222 222 3 6777788888899999999999999999999
Q ss_pred HhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEc
Q psy6714 194 NDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEV 273 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~v 273 (303)
+++.++++++++|||+++|++.+.|++.++ ..++++|||++..++.|.+.++.+...++++.+.++++|+.+|.++++
T Consensus 80 ~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G~~~~i 157 (273)
T PRK07680 80 QKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGSRCSEEDQQKLERLFSNISTPLVI 157 (273)
T ss_pred HHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCCCEEEE
Confidence 999988888899999999999999999987 479999999998888999888888777888999999999999999999
Q ss_pred CCCCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 274 PEYLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 274 dE~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
+|+.+|.+++++||+|||++.|+++|+.
T Consensus 158 ~e~~~~~~~~l~gs~pa~~~~~~~al~~ 185 (273)
T PRK07680 158 EEDITRVSSDIVSCGPAFFSYLLQRFID 185 (273)
T ss_pred ChHhcchhhhhccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999863
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-26 Score=217.07 Aligned_cols=168 Identities=18% Similarity=0.197 Sum_probs=142.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh-----------c---HHHHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHHHh
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI-----------V---SKATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVALND 195 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r-----------~---~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL~e 195 (303)
..+||+|||+|+||. .++..+.. . .+.+.+.|+.+ .++.+++++||+|||||||+ +...++++
T Consensus 2 ~~kkIgiIG~G~mG~-AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~-~s~~ea~~~ADiVvLaVpp~~~~~~v~~e 79 (314)
T TIGR00465 2 KGKTVAIIGYGSQGH-AQALNLRDSGLNVIVGLRKGGASWKKATEDGFKV-GTVEEAIPQADLIMNLLPDEVQHEVYEAE 79 (314)
T ss_pred CcCEEEEEeEcHHHH-HHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEE-CCHHHHHhcCCEEEEeCCcHhHHHHHHHH
Confidence 357899999999999 45544311 1 12334668875 46788899999999999999 77777778
Q ss_pred hccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHh-h------hCCcEEEE-eCCCCCHHHHHHHHHHHHhc
Q psy6714 196 IKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPAL-V------RQGASVFV-RGSSASDQDAQTVINLFKSV 267 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~-v------~~G~til~-~g~~~~~e~~e~V~~Lfs~i 267 (303)
+.+.++++. +||+++|+++..++..++.+.+|+|+|||+|.. + +.|++.++ ...+.+.++.+.+..+|+.+
T Consensus 80 i~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~i 158 (314)
T TIGR00465 80 IQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAI 158 (314)
T ss_pred HHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHc
Confidence 988887675 899999999999999998777999999999998 5 89998886 77788999999999999999
Q ss_pred CCc-------E---EcCCCCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 268 GTC-------E---EVPEYLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 268 G~~-------v---~vdE~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
|.. . +++|++||..++++||+|||+|.++|+|+.
T Consensus 159 G~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~ealv~ 202 (314)
T TIGR00465 159 GGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVE 202 (314)
T ss_pred CCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHHHH
Confidence 988 5 778999999999999999999999999963
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-23 Score=190.09 Aligned_cols=157 Identities=22% Similarity=0.300 Sum_probs=130.8
Q ss_pred CcEEEEcCChhhHHHHHHHH-------------hhcHHH---Hhh-C-CCeEecChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 133 SDKQIAGTTERGPGALIASL-------------NIVSKA---TGT-M-GAKITFDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al-------------~r~~e~---l~e-~-Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
|||||||+|+||. .++..+ ++..++ +.+ . |+.++.++.++++++|+|||||||+++.+++.
T Consensus 1 m~IgiIG~G~mG~-aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~~~vl~ 79 (258)
T PRK06476 1 MKIGFIGTGAITE-AMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLR 79 (258)
T ss_pred CeEEEECcCHHHH-HHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHHHHHHH
Confidence 6899999999999 455432 122232 222 3 46777888888999999999999999999998
Q ss_pred hhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEc-
Q psy6714 195 DIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEV- 273 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~v- 273 (303)
++. +.++++|||+++|++.+.|++.++....++++|||++...+.|++.++++ .+.+++||+.+|.++++
T Consensus 80 ~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~-------~~~~~~l~~~lG~~~~~~ 150 (258)
T PRK06476 80 ALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP-------DPFVAALFDALGTAVECD 150 (258)
T ss_pred Hhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC-------HHHHHHHHHhcCCcEEEC
Confidence 873 45788999999999999999999765689999999999999999887754 25899999999998877
Q ss_pred CCCCchhhhhhccchHHHHHHHHHhhh
Q psy6714 274 PEYLLDGITGLSGSGPAYRYEVTSNEV 300 (303)
Q Consensus 274 dE~~~Da~tAlsGsgPAf~~~~ie~~~ 300 (303)
+|+++|.+++++ |+|||+|.+++++.
T Consensus 151 ~e~~~d~~~a~~-s~~a~~~~~~~~~~ 176 (258)
T PRK06476 151 SEEEYDLLAAAS-ALMATYFGILETAT 176 (258)
T ss_pred ChHhccceeehh-ccHHHHHHHHHHHH
Confidence 599999999996 69999999999875
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-18 Score=160.42 Aligned_cols=162 Identities=14% Similarity=0.097 Sum_probs=123.1
Q ss_pred CcEEEEcCChhhHHHHHHHHhh----------cH---HHHhhCCCe-EecChHHhhcCCCEEEEeeCCccHHHHHHhhcc
Q psy6714 133 SDKQIAGTTERGPGALIASLNI----------VS---KATGTMGAK-ITFDNKEVTLNSEVIILAVKPHIVPVALNDIKP 198 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~r----------~~---e~l~e~Gv~-v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~ 198 (303)
|||+|||+|+||+ +++..+.. .. +.+.+.|+. ...+..+++++||+||+|||++.+.++++++.+
T Consensus 1 m~I~IIG~G~mG~-sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~~l~~ 79 (279)
T PRK07417 1 MKIGIVGLGLIGG-SLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSEQLIP 79 (279)
T ss_pred CeEEEEeecHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHHHHHH
Confidence 6899999999999 67765422 22 234455642 233344578899999999999999999999988
Q ss_pred ccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHh-----------hhCCcEEEEeCCCCCHHHHHHHHHHHHhc
Q psy6714 199 VFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPAL-----------VRQGASVFVRGSSASDQDAQTVINLFKSV 267 (303)
Q Consensus 199 ~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~-----------v~~G~til~~g~~~~~e~~e~V~~Lfs~i 267 (303)
+++++. +|+++++++...++........+++.||....+ +.....++++....+++.++.++.+|+.+
T Consensus 80 ~l~~~~-ii~d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~l 158 (279)
T PRK07417 80 ALPPEA-IVTDVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSL 158 (279)
T ss_pred hCCCCc-EEEeCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHc
Confidence 886665 567889999887776543223588888854321 22334577887778899999999999999
Q ss_pred CCc-EEcCCCCchhhhhhccchHHHHHHHH
Q psy6714 268 GTC-EEVPEYLLDGITGLSGSGPAYRYEVT 296 (303)
Q Consensus 268 G~~-v~vdE~~~Da~tAlsGsgPAf~~~~i 296 (303)
|.. +++++++||.++++++++|+|+...+
T Consensus 159 G~~~v~~~~~~hD~~~a~~shlp~~~a~~l 188 (279)
T PRK07417 159 GSKIYTADPEEHDRAVALISHLPVMVSAAL 188 (279)
T ss_pred CCEEEEcCHHHHHHHHHHHcchHHHHHHHH
Confidence 975 57899999999999999999988654
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.8e-18 Score=160.95 Aligned_cols=169 Identities=15% Similarity=0.151 Sum_probs=130.2
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhc------------HHHHhhCCCeEecChHHhh-cCCCEEEEeeCCccHHHHHHhh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIV------------SKATGTMGAKITFDNKEVT-LNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~------------~e~l~e~Gv~v~~d~~eav-~~ADIVILAVpP~~v~~VL~eI 196 (303)
+.+|+|+|||+|.||+ +++..+... .+...+.|+....+..+++ .++|+||||||++.+.++++++
T Consensus 34 ~~~~kI~IIG~G~mG~-slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~~l 112 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQ-FLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRSL 112 (304)
T ss_pred CCCCEEEEEeeCHHHH-HHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHHhh
Confidence 3468999999999999 677654321 1223456887667777766 4799999999999999999998
Q ss_pred -ccccCCCCEEEEecC--CCcHHHHHhhCCCCCceEEEecCcHHhhhC----CcEEEEeC-----CCCCHHHHHHHHHHH
Q psy6714 197 -KPVFNESNLLISVAG--GVPIKNMEQALPKNSRIIRAMPNTPALVRQ----GASVFVRG-----SSASDQDAQTVINLF 264 (303)
Q Consensus 197 -~~~L~~g~IVVSiaa--GV~ie~L~~~l~~~~~VVr~mPn~p~~v~~----G~til~~g-----~~~~~e~~e~V~~Lf 264 (303)
.++++++++|+++.+ |...+.+++.++.+..+|++||+.+.+.+. +..++... +..+++..+.++++|
T Consensus 113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~l~ 192 (304)
T PLN02256 113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERFLDIF 192 (304)
T ss_pred hhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHHHHHH
Confidence 567888888887766 455677888887656899999999877652 22332221 345778899999999
Q ss_pred HhcCC-cEEcCCCCchhhhhhccchHHHHHHHHHhh
Q psy6714 265 KSVGT-CEEVPEYLLDGITGLSGSGPAYRYEVTSNE 299 (303)
Q Consensus 265 s~iG~-~v~vdE~~~Da~tAlsGsgPAf~~~~ie~~ 299 (303)
+.+|. +++++.++||.++|.+++.|-.+...+-.+
T Consensus 193 ~~lGa~v~~~~~eeHD~~vA~iShLpH~la~~L~~~ 228 (304)
T PLN02256 193 EEEGCRMVEMSCEEHDRYAAGSQFITHTVGRILGKM 228 (304)
T ss_pred HHCCCEEEEeCHHHHhHHHHhhhhHHHHHHHHHHHc
Confidence 99997 577899999999999999999888777544
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.9e-18 Score=162.50 Aligned_cols=162 Identities=15% Similarity=0.184 Sum_probs=120.8
Q ss_pred CcEEEEcCChhhHHHHHHHHhhc------------HHH-Hhh--CCCe--EecChHHhhcCCCEEEEeeCCccHHHHHHh
Q psy6714 133 SDKQIAGTTERGPGALIASLNIV------------SKA-TGT--MGAK--ITFDNKEVTLNSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~r~------------~e~-l~e--~Gv~--v~~d~~eav~~ADIVILAVpP~~v~~VL~e 195 (303)
++|+|||+|+||+ +++..+.+. ... ... .|+. ...+..+++++||+||||||++.+.+++++
T Consensus 1 ~~I~iIG~GliG~-siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~~ 79 (359)
T PRK06545 1 RTVLIVGLGLIGG-SLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAALLAE 79 (359)
T ss_pred CeEEEEEeCHHHH-HHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHHHHHH
Confidence 4699999999999 677664321 111 112 3332 235667788999999999999999999999
Q ss_pred hcc-ccCCCCEEEEecCCCcHHHH---HhhCCCCCceEEEecCcHH-----------hhhCCcEEEEeCCCCCHHHHHHH
Q psy6714 196 IKP-VFNESNLLISVAGGVPIKNM---EQALPKNSRIIRAMPNTPA-----------LVRQGASVFVRGSSASDQDAQTV 260 (303)
Q Consensus 196 I~~-~L~~g~IVVSiaaGV~ie~L---~~~l~~~~~VVr~mPn~p~-----------~v~~G~til~~g~~~~~e~~e~V 260 (303)
+.+ .++++ .||+++++++...+ ++.++....++..||+... .+....+++++....+++.++.+
T Consensus 80 l~~~~l~~~-~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v 158 (359)
T PRK06545 80 LADLELKPG-VIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAEL 158 (359)
T ss_pred HhhcCCCCC-cEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHH
Confidence 987 36666 56778999987644 4444433467777664322 12344578888877889999999
Q ss_pred HHHHHhcCCc-EEcCCCCchhhhhhccchHHHHHHHH
Q psy6714 261 INLFKSVGTC-EEVPEYLLDGITGLSGSGPAYRYEVT 296 (303)
Q Consensus 261 ~~Lfs~iG~~-v~vdE~~~Da~tAlsGsgPAf~~~~i 296 (303)
+++|+.+|.. +++++++||.++|++||+|+|++..+
T Consensus 159 ~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al 195 (359)
T PRK06545 159 KDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSL 195 (359)
T ss_pred HHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHH
Confidence 9999999986 46899999999999999999998755
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5e-18 Score=177.27 Aligned_cols=165 Identities=16% Similarity=0.198 Sum_probs=129.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh------------cHH---HHhhCCCe--EecChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI------------VSK---ATGTMGAK--ITFDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r------------~~e---~l~e~Gv~--v~~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
..||+|||+|+||. +++..+.. ..+ .+.+.|+. ...+..++++++|+||+|||++.+.++++
T Consensus 3 ~~~I~IIG~G~mG~-ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~ 81 (735)
T PRK14806 3 FGRVVVIGLGLIGG-SFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLAMEKVLA 81 (735)
T ss_pred CcEEEEEeeCHHHH-HHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHHHHHHHH
Confidence 36799999999999 56654321 112 23456764 34566778899999999999999999999
Q ss_pred hhccccCCCCEEEEecCCCc---HHHHHhhCCCCCceEEEecCcHHhhh--------------CCcEEEEeCCCCCHHHH
Q psy6714 195 DIKPVFNESNLLISVAGGVP---IKNMEQALPKNSRIIRAMPNTPALVR--------------QGASVFVRGSSASDQDA 257 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV~---ie~L~~~l~~~~~VVr~mPn~p~~v~--------------~G~til~~g~~~~~e~~ 257 (303)
++.+++++++ ||+++++++ .+.+++.++. .++++|||||+... .+.+++++....+++..
T Consensus 82 ~l~~~~~~~~-ii~d~~svk~~~~~~l~~~~~~--~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~ 158 (735)
T PRK14806 82 DLKPLLSEHA-IVTDVGSTKGNVVDAARAVFGE--LPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAAL 158 (735)
T ss_pred HHHHhcCCCc-EEEEcCCCchHHHHHHHHhccc--cCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHH
Confidence 9998886664 677888888 6677777763 36899999997522 23457788777888999
Q ss_pred HHHHHHHHhcCC-cEEcCCCCchhhhhhccchHH-HHHHHHHhhh
Q psy6714 258 QTVINLFKSVGT-CEEVPEYLLDGITGLSGSGPA-YRYEVTSNEV 300 (303)
Q Consensus 258 e~V~~Lfs~iG~-~v~vdE~~~Da~tAlsGsgPA-f~~~~ie~~~ 300 (303)
+.++++|+.+|. +++++|++||.++|++||+|+ |.|.|++++.
T Consensus 159 ~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph~~~~~l~~~l~ 203 (735)
T PRK14806 159 ARVDRLWRAVGADVLHMDVAHHDEVLAATSHLPHLLAFSLVDQLA 203 (735)
T ss_pred HHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHHHHHHHHHHHHh
Confidence 999999999997 567799999999999999999 8999998874
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=156.51 Aligned_cols=164 Identities=13% Similarity=0.193 Sum_probs=119.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh------------cH---HHHhhCCC--eEecChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI------------VS---KATGTMGA--KITFDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r------------~~---e~l~e~Gv--~v~~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
.+||+|||+|.||. +++..+.. .. +.+.+.|+ ....+..+++++||+||+|+|+..+.++++
T Consensus 6 ~~~I~IIG~G~mG~-sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~ 84 (307)
T PRK07502 6 FDRVALIGIGLIGS-SLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAVAA 84 (307)
T ss_pred CcEEEEEeeCHHHH-HHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHHHH
Confidence 57899999999999 56655321 11 23345565 244566778899999999999999999999
Q ss_pred hhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhh--------------hCCcEEEEeCCCCCHHHHHHH
Q psy6714 195 DIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALV--------------RQGASVFVRGSSASDQDAQTV 260 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v--------------~~G~til~~g~~~~~e~~e~V 260 (303)
++.++++++.+| +++++++...++.........+++++++|+.. .....++++....+++.++.+
T Consensus 85 ~l~~~l~~~~iv-~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~ 163 (307)
T PRK07502 85 EIAPHLKPGAIV-TDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVARL 163 (307)
T ss_pred HHHhhCCCCCEE-EeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHH
Confidence 998888777754 56788886655443221112345555555431 112345677666788899999
Q ss_pred HHHHHhcCCc-EEcCCCCchhhhhhccchHHHHHHHHH
Q psy6714 261 INLFKSVGTC-EEVPEYLLDGITGLSGSGPAYRYEVTS 297 (303)
Q Consensus 261 ~~Lfs~iG~~-v~vdE~~~Da~tAlsGsgPAf~~~~ie 297 (303)
.++|+.+|.. +++++++||.++|++|++|+|+++++-
T Consensus 164 ~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~~l~ 201 (307)
T PRK07502 164 TAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAYTIV 201 (307)
T ss_pred HHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHHHHH
Confidence 9999999975 567999999999999999999888763
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=147.73 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=116.0
Q ss_pred CcEEEEcCChhhHHHHHHHHh------------hcHH---HHhhCCCe-EecChHHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 133 SDKQIAGTTERGPGALIASLN------------IVSK---ATGTMGAK-ITFDNKEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~------------r~~e---~l~e~Gv~-v~~d~~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
|||+|||+|+||+ +++..+. +..+ .+.+.|+. ...+..++. +||+||+|||++.+.+++.++
T Consensus 1 m~I~iIG~G~mG~-sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~~l 78 (275)
T PRK08507 1 MKIGIIGLGLMGG-SLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAIIEILPKL 78 (275)
T ss_pred CEEEEEccCHHHH-HHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHHHHHHHHH
Confidence 6899999999999 5665532 1122 23456763 344666655 599999999999999999999
Q ss_pred ccccCCCCEEEEecCCCcHHHHHhhCCC--CCceEEEecCcHH------h----hhCC-cEEEEeCCCCCHHHHHHHHHH
Q psy6714 197 KPVFNESNLLISVAGGVPIKNMEQALPK--NSRIIRAMPNTPA------L----VRQG-ASVFVRGSSASDQDAQTVINL 263 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV~ie~L~~~l~~--~~~VVr~mPn~p~------~----v~~G-~til~~g~~~~~e~~e~V~~L 263 (303)
.+ ++++++|++ ++.++....+ .+.. ...+++.||+... . ..+| .+++++.+..+++..+.++.+
T Consensus 79 ~~-l~~~~iv~d-~gs~k~~i~~-~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l 155 (275)
T PRK08507 79 LD-IKENTTIID-LGSTKAKIIE-SVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEI 155 (275)
T ss_pred hc-cCCCCEEEE-CccchHHHHH-HHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHH
Confidence 88 888888775 4555544333 2221 1468999998532 1 1144 456777666788899999999
Q ss_pred HHhcCC-cEEcCCCCchhhhhhccchHHHHHHHH
Q psy6714 264 FKSVGT-CEEVPEYLLDGITGLSGSGPAYRYEVT 296 (303)
Q Consensus 264 fs~iG~-~v~vdE~~~Da~tAlsGsgPAf~~~~i 296 (303)
|+.+|. ++++++++||.++++++..|-++...+
T Consensus 156 ~~~~G~~~~~~~~~~hD~~~a~vs~lph~~a~~l 189 (275)
T PRK08507 156 FSGLGMRIVYMDAKEHDLHAAYISHLPHIISFAL 189 (275)
T ss_pred HHHhCCEEEEeCHHHHHHHHHHHhHHHHHHHHHH
Confidence 999995 678899999999999999998766544
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.2e-16 Score=148.66 Aligned_cols=167 Identities=17% Similarity=0.194 Sum_probs=127.4
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhh--------------cHHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHH-H
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNI--------------VSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVAL-N 194 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r--------------~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL-~ 194 (303)
+..++|||||+|+||.+ ++..+.. ..+.+.+.|+.+. +..+++++||+|||+||+....+++ +
T Consensus 15 L~gktIgIIG~GsmG~A-lA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~~~V~~~ 92 (330)
T PRK05479 15 IKGKKVAIIGYGSQGHA-HALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQAEVYEE 92 (330)
T ss_pred hCCCEEEEEeeHHHHHH-HHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHHHHHHHH
Confidence 34678999999999994 5544321 1123345688764 8889999999999999999999999 7
Q ss_pred hhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHh-------hhCCcEEEE-eCCCCCHHHHHHHHHHHHh
Q psy6714 195 DIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPAL-------VRQGASVFV-RGSSASDQDAQTVINLFKS 266 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~-------v~~G~til~-~g~~~~~e~~e~V~~Lfs~ 266 (303)
++.+.++++++| +.++|+++..+...++.+..|+++|||.|.. ++.|++.++ ...+.+.++.+.+..+|+.
T Consensus 93 ~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~a 171 (330)
T PRK05479 93 EIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKG 171 (330)
T ss_pred HHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 899889888876 8999999999988888778999999999988 889999887 6677789999999999999
Q ss_pred cCCc-E-----EcC-CC---CchhhhhhccchHHHHHHHHHhh
Q psy6714 267 VGTC-E-----EVP-EY---LLDGITGLSGSGPAYRYEVTSNE 299 (303)
Q Consensus 267 iG~~-v-----~vd-E~---~~Da~tAlsGsgPAf~~~~ie~~ 299 (303)
+|.. . .+. |. .+..-+.++|...+.+-.-++-+
T Consensus 172 iG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l 214 (330)
T PRK05479 172 IGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETL 214 (330)
T ss_pred cCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHH
Confidence 9964 2 333 33 23334455555555544444443
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-16 Score=155.53 Aligned_cols=165 Identities=18% Similarity=0.253 Sum_probs=126.2
Q ss_pred CcEEEEc-CChhhHHHHHHHHhh----------cHHH----HhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhc
Q psy6714 133 SDKQIAG-TTERGPGALIASLNI----------VSKA----TGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 133 mkIgIIG-lG~MG~~~La~al~r----------~~e~----l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~ 197 (303)
|||+||| +|.||+ +++..+.. ..+. ..+.|+....+..+++.++|+||+|||++.+.+++.++.
T Consensus 1 MkI~IIGG~G~mG~-slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~~l~ 79 (437)
T PRK08655 1 MKISIIGGTGGLGK-WFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVIKEVA 79 (437)
T ss_pred CEEEEEecCCHHHH-HHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHHHHHH
Confidence 7899997 999999 57665422 2222 235688777778888999999999999999999999999
Q ss_pred cccCCCCEEEEecC--CCcHHHHHhhCCCCCceEEEecCcHH---hhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCc-E
Q psy6714 198 PVFNESNLLISVAG--GVPIKNMEQALPKNSRIIRAMPNTPA---LVRQGASVFVRGSSASDQDAQTVINLFKSVGTC-E 271 (303)
Q Consensus 198 ~~L~~g~IVVSiaa--GV~ie~L~~~l~~~~~VVr~mPn~p~---~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v 271 (303)
+.++++++|+++.+ +...+.+++.++.+..++.+||.... .+.....++++++..+++..+.++++|+.+|.. +
T Consensus 80 ~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~ 159 (437)
T PRK08655 80 PHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVI 159 (437)
T ss_pred hhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 98888998886653 33446677777655678888865321 222334567777667888999999999999975 5
Q ss_pred EcCCCCchhhhhhccchHHHHHHHHHh
Q psy6714 272 EVPEYLLDGITGLSGSGPAYRYEVTSN 298 (303)
Q Consensus 272 ~vdE~~~Da~tAlsGsgPAf~~~~ie~ 298 (303)
++++++||.++|+++++|.|++..+-.
T Consensus 160 ~~~~e~HD~~~a~vs~lph~~a~al~~ 186 (437)
T PRK08655 160 VTSPEEHDRIMSVVQGLTHFAYISIAS 186 (437)
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999998776543
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.9e-16 Score=145.79 Aligned_cols=168 Identities=17% Similarity=0.217 Sum_probs=126.1
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhc------------HH---HHhhCCCeEe--cCh-HHhhcCCCEEEEeeCCccHHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNIV------------SK---ATGTMGAKIT--FDN-KEVTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r~------------~e---~l~e~Gv~v~--~d~-~eav~~ADIVILAVpP~~v~~V 192 (303)
.+|+|+|+|+|+||+ +|++.++.. .. ...++|+.-. .+. .+.+.++|+||+|||...+.++
T Consensus 2 ~~~~v~IvG~GliG~-s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~~~ 80 (279)
T COG0287 2 ASMKVGIVGLGLMGG-SLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEEV 80 (279)
T ss_pred CCcEEEEECCchHHH-HHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHHHH
Confidence 368999999999999 888875432 11 2224566422 233 5667789999999999999999
Q ss_pred HHhhccccCCCCEEEEecCCCcHHHHH---hhCCCCCceEEEecCcHHh-----hhCCcEEEEeCCCCCHHHHHHHHHHH
Q psy6714 193 LNDIKPVFNESNLLISVAGGVPIKNME---QALPKNSRIIRAMPNTPAL-----VRQGASVFVRGSSASDQDAQTVINLF 264 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSiaaGV~ie~L~---~~l~~~~~VVr~mPn~p~~-----v~~G~til~~g~~~~~e~~e~V~~Lf 264 (303)
++++.++++++++| +++++++...++ +..+....++..||+...+ +.....++|+....+.+.++.+.++|
T Consensus 81 l~~l~~~l~~g~iv-~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~~ 159 (279)
T COG0287 81 LKELAPHLKKGAIV-TDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRLW 159 (279)
T ss_pred HHHhcccCCCCCEE-EecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 99999999899865 577788875544 4454323566777665431 12335688888777788999999999
Q ss_pred HhcCC-cEEcCCCCchhhhhhccchHHHHHHHHHhhh
Q psy6714 265 KSVGT-CEEVPEYLLDGITGLSGSGPAYRYEVTSNEV 300 (303)
Q Consensus 265 s~iG~-~v~vdE~~~Da~tAlsGsgPAf~~~~ie~~~ 300 (303)
+.+|. +++++.++||.++|.+++.|-|+++-+-...
T Consensus 160 ~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~al~~~~ 196 (279)
T COG0287 160 EALGARLVEMDAEEHDRVMAAVSHLPHAAALALANAL 196 (279)
T ss_pred HHcCCEEEEcChHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99996 5778999999999999999999888765544
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=148.31 Aligned_cols=159 Identities=13% Similarity=0.106 Sum_probs=115.5
Q ss_pred CCcEEEEcC-ChhhHHHHHHHHhhcHHHHhhCCC----eEecChHHhhcCCCEEEEeeCCccHHHHHHhhccc---cCCC
Q psy6714 132 RSDKQIAGT-TERGPGALIASLNIVSKATGTMGA----KITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPV---FNES 203 (303)
Q Consensus 132 ~mkIgIIGl-G~MG~~~La~al~r~~e~l~e~Gv----~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~---L~~g 203 (303)
.++|+|||+ |+||+ +|++.++.... ..=.|+ ....++.+++.+||+||||||+..+.++++++.++ ++++
T Consensus 4 ~~~I~IIGl~GliGg-slA~alk~~~~-~~V~g~D~~d~~~~~~~~~v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~~ 81 (370)
T PRK08818 4 QPVVGIVGSAGAYGR-WLARFLRTRMQ-LEVIGHDPADPGSLDPATLLQRADVLIFSAPIRHTAALIEEYVALAGGRAAG 81 (370)
T ss_pred CCEEEEECCCCHHHH-HHHHHHHhcCC-CEEEEEcCCccccCCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCCC
Confidence 468999999 99999 89988775311 000011 11345667889999999999999999999999875 6677
Q ss_pred CEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhh---CC-cEEEEeCCCCCHHHHHHHHHHHHhcCC-cEEcCCCCc
Q psy6714 204 NLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVR---QG-ASVFVRGSSASDQDAQTVINLFKSVGT-CEEVPEYLL 278 (303)
Q Consensus 204 ~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~---~G-~til~~g~~~~~e~~e~V~~Lfs~iG~-~v~vdE~~~ 278 (303)
+ +|+++++++...++..++....+|..||+...+.. +| ..++|+. ...+..++++++|+.+|. +++++.++|
T Consensus 82 ~-iVtDVgSvK~~i~~~~~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~aeeH 158 (370)
T PRK08818 82 Q-LWLDVTSIKQAPVAAMLASQAEVVGLHPMTAPPKSPTLKGRVMVVCEA--RLQHWSPWVQSLCSALQAECVYATPEHH 158 (370)
T ss_pred e-EEEECCCCcHHHHHHHHhcCCCEEeeCCCCCCCCCcccCCCeEEEeCC--CchhHHHHHHHHHHHcCCEEEEcCHHHH
Confidence 6 56788999987777766544568888887654321 34 3466654 244557899999999996 577899999
Q ss_pred hhhhhhccchHHHHHHH
Q psy6714 279 DGITGLSGSGPAYRYEV 295 (303)
Q Consensus 279 Da~tAlsGsgPAf~~~~ 295 (303)
|.++|+++..|-+....
T Consensus 159 D~~~A~vS~LsHl~~l~ 175 (370)
T PRK08818 159 DRVMALVQAMVHATHLA 175 (370)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999997555544443
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.6e-15 Score=152.71 Aligned_cols=195 Identities=18% Similarity=0.178 Sum_probs=134.4
Q ss_pred hccccccccCCCcCCCCCCCCCCCCcccccCCCcEEEEcCChhhHHHHHHHHhhc------------HHHHhhCCCeEec
Q psy6714 101 REGNECASRTPTRADATEAPTTPSSREARWNRSDKQIAGTTERGPGALIASLNIV------------SKATGTMGAKITF 168 (303)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIgIIGlG~MG~~~La~al~r~------------~e~l~e~Gv~v~~ 168 (303)
|---.|.+++++-.|-- .++-..-.-+.+|+|||||+|+||+ .|+..+... .+.+.+.|+....
T Consensus 24 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~kIgIIG~G~mG~-slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~ 99 (667)
T PLN02712 24 RLSLSIKSQSATATDKQ---PLPNSNPDNTTQLKIAIIGFGNYGQ-FLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFL 99 (667)
T ss_pred hhhhhhcccccccCCCC---CCCCCCCccCCCCEEEEEccCHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeC
Confidence 33344766666544433 1121111224468999999999999 677664321 1234467887777
Q ss_pred ChHHhh-cCCCEEEEeeCCccHHHHHHhhc-cccCCCCEEEEecCCCcH---HHHHhhCCCCCceEEEecCcHHhhh---
Q psy6714 169 DNKEVT-LNSEVIILAVKPHIVPVALNDIK-PVFNESNLLISVAGGVPI---KNMEQALPKNSRIIRAMPNTPALVR--- 240 (303)
Q Consensus 169 d~~eav-~~ADIVILAVpP~~v~~VL~eI~-~~L~~g~IVVSiaaGV~i---e~L~~~l~~~~~VVr~mPn~p~~v~--- 240 (303)
+..+++ +++|+||||||+..+.+++.++. ++++++++|+++ ++++. +.+...++.+..++.+||+...+..
T Consensus 100 d~~e~~~~~aDvViLavP~~~~~~vl~~l~~~~l~~g~iVvDv-~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g 178 (667)
T PLN02712 100 DPHDLCERHPDVILLCTSIISTENVLKSLPLQRLKRNTLFVDV-LSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHG 178 (667)
T ss_pred CHHHHhhcCCCEEEEcCCHHHHHHHHHhhhhhcCCCCeEEEEC-CCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccch
Confidence 777755 57999999999999999999886 567788877765 56775 3566677765678999998754411
Q ss_pred -CCcE-EEEe---C-CCCCHHHHHHHHHHHHhcCC-cEEcCCCCchhhhhhccchHHHHHHHHHhhh
Q psy6714 241 -QGAS-VFVR---G-SSASDQDAQTVINLFKSVGT-CEEVPEYLLDGITGLSGSGPAYRYEVTSNEV 300 (303)
Q Consensus 241 -~G~t-il~~---g-~~~~~e~~e~V~~Lfs~iG~-~v~vdE~~~Da~tAlsGsgPAf~~~~ie~~~ 300 (303)
.+.. +++. + +....+..+++.++|+.+|. .++++.++||.+.|.+++.|-++.+++..+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms~eeHD~~~A~vshLpH~la~~L~~~~ 245 (667)
T PLN02712 179 WDGLRFVYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMSCTEHDKYAAESQFITHTVGRVLEMLK 245 (667)
T ss_pred hccCcEEEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2222 3331 1 22223456788899999996 5778999999999999999998888887654
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-15 Score=155.77 Aligned_cols=174 Identities=16% Similarity=0.118 Sum_probs=128.2
Q ss_pred CcccccCCCcEEEEcCChhhHHHHHHHHhhc------------HHHHhhCCCeEecChHHhhc-CCCEEEEeeCCccHHH
Q psy6714 125 SREARWNRSDKQIAGTTERGPGALIASLNIV------------SKATGTMGAKITFDNKEVTL-NSEVIILAVKPHIVPV 191 (303)
Q Consensus 125 ~~~~~~~~mkIgIIGlG~MG~~~La~al~r~------------~e~l~e~Gv~v~~d~~eav~-~ADIVILAVpP~~v~~ 191 (303)
+.+..+..|||||||+|+||+ +++..+... .+.+.+.|+....+..+++. .+|+||||||+..+.+
T Consensus 362 ~~~~~~~~~kIgIIGlG~mG~-slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~ 440 (667)
T PLN02712 362 GCVNDGSKLKIAIVGFGNFGQ-FLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEK 440 (667)
T ss_pred hccCCCCCCEEEEEecCHHHH-HHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHH
Confidence 334445679999999999999 677654321 12344678876677777765 5999999999999999
Q ss_pred HHHhhcc-ccCCCCEEEEecCC--CcHHHHHhhCCCCCceEEEecCcHHhhh-CC---cE-----EEEeCCCCCHHHHHH
Q psy6714 192 ALNDIKP-VFNESNLLISVAGG--VPIKNMEQALPKNSRIIRAMPNTPALVR-QG---AS-----VFVRGSSASDQDAQT 259 (303)
Q Consensus 192 VL~eI~~-~L~~g~IVVSiaaG--V~ie~L~~~l~~~~~VVr~mPn~p~~v~-~G---~t-----il~~g~~~~~e~~e~ 259 (303)
++.++.. .++++++||++.++ ...+.+.+.++.+..+++.||+.+.+.+ .| .. .++.++....+..+.
T Consensus 441 vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~ 520 (667)
T PLN02712 441 VLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDS 520 (667)
T ss_pred HHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHH
Confidence 9998875 57788888877543 4567778888766689999999887654 23 11 122233334456677
Q ss_pred HHHHHHhcCC-cEEcCCCCchhhhhhccchHHHHHHHHHhh
Q psy6714 260 VINLFKSVGT-CEEVPEYLLDGITGLSGSGPAYRYEVTSNE 299 (303)
Q Consensus 260 V~~Lfs~iG~-~v~vdE~~~Da~tAlsGsgPAf~~~~ie~~ 299 (303)
+.++|+.+|. .++++.++||.++|.+++.|..+..++..+
T Consensus 521 l~~l~~~lGa~vv~ms~eeHD~~~A~vShLpHlla~~L~~~ 561 (667)
T PLN02712 521 FLDIFAREGCRMVEMSCAEHDWHAAGSQFITHTMGRLLEKL 561 (667)
T ss_pred HHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 7899999996 577899999999999999998877776543
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.9e-14 Score=138.13 Aligned_cols=158 Identities=12% Similarity=0.113 Sum_probs=111.0
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhcHHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEec
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIVSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVA 210 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSia 210 (303)
+++|+||| +|.||+ +|++.+........-.+.....+..+++.+||+||+|||+..+.+++.++.+ ++++++|+++
T Consensus 98 ~~~I~IiGG~GlmG~-slA~~l~~~G~~V~~~d~~~~~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~~~iv~Dv- 174 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-LFAKMLTLSGYQVRILEQDDWDRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPEDCILVDL- 174 (374)
T ss_pred cceEEEEcCCChhhH-HHHHHHHHCCCeEEEeCCCcchhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCCCcEEEEC-
Confidence 67899998 999999 6876654321111001111113456778899999999999999999999988 8788876644
Q ss_pred CCCcHHHH---HhhCCCCCceEEEecCcHHhhh--CCcEEEEeCCCCCHHHHHHHHHHHHhcCC-cEEcCCCCchhhhhh
Q psy6714 211 GGVPIKNM---EQALPKNSRIIRAMPNTPALVR--QGASVFVRGSSASDQDAQTVINLFKSVGT-CEEVPEYLLDGITGL 284 (303)
Q Consensus 211 aGV~ie~L---~~~l~~~~~VVr~mPn~p~~v~--~G~til~~g~~~~~e~~e~V~~Lfs~iG~-~v~vdE~~~Da~tAl 284 (303)
++++...+ .+.++ ..++..||..+.... .+..+ +..+..+++..+.+.++|+.+|. ++++++++||.++|+
T Consensus 175 ~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~v-v~~~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~ 251 (374)
T PRK11199 175 TSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVV-VVCDGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAF 251 (374)
T ss_pred CCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEE-EEcCCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHH
Confidence 77765444 44443 257888887654322 22222 22334466788999999999997 567899999999999
Q ss_pred ccchHHHHHHH
Q psy6714 285 SGSGPAYRYEV 295 (303)
Q Consensus 285 sGsgPAf~~~~ 295 (303)
+++.|-++.+.
T Consensus 252 vshLpH~~a~a 262 (374)
T PRK11199 252 IQALRHFATFA 262 (374)
T ss_pred HHHHHHHHHHH
Confidence 99999887555
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=123.49 Aligned_cols=134 Identities=25% Similarity=0.342 Sum_probs=99.8
Q ss_pred CcEEEEc-CChhhHHHHHHHHh----------hcHHHHh-----------hCCC--eE-ecChHHhhcCCCEEEEeeCCc
Q psy6714 133 SDKQIAG-TTERGPGALIASLN----------IVSKATG-----------TMGA--KI-TFDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 133 mkIgIIG-lG~MG~~~La~al~----------r~~e~l~-----------e~Gv--~v-~~d~~eav~~ADIVILAVpP~ 187 (303)
|||+||| +|+||. .|+..+- +..+++. ..|+ .+ ..+..++++++|+||||||++
T Consensus 1 MkI~IIGG~G~mG~-ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~ 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGK-GLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD 79 (219)
T ss_pred CEEEEEcCCCHHHH-HHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH
Confidence 7899997 999999 4554421 2222211 1132 12 246677889999999999999
Q ss_pred cHHHHHHhhccccCCCCEEEEecCCCcH-----------------HHHHhhCCCCCceEEEecCcHHhhhCC------cE
Q psy6714 188 IVPVALNDIKPVFNESNLLISVAGGVPI-----------------KNMEQALPKNSRIIRAMPNTPALVRQG------AS 244 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVVSiaaGV~i-----------------e~L~~~l~~~~~VVr~mPn~p~~v~~G------~t 244 (303)
.+.++++++.+.+. +++|||+++|++. +.+++.++...+||++|||+++.+..+ ..
T Consensus 80 ~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~~~~~~~~~~~~~ 158 (219)
T TIGR01915 80 HVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAVLLQDVDDEVDCD 158 (219)
T ss_pred HHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHHHhcCCCCCCCCC
Confidence 99999999887664 5899999999987 567888875468999999999765432 34
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhc-CCc
Q psy6714 245 VFVRGSSASDQDAQTVINLFKSV-GTC 270 (303)
Q Consensus 245 il~~g~~~~~e~~e~V~~Lfs~i-G~~ 270 (303)
+++.|+ ++++++.|.+|.+.+ |..
T Consensus 159 ~~v~Gd--d~~ak~~v~~L~~~~~G~~ 183 (219)
T TIGR01915 159 VLVCGD--DEEAKEVVAELAGRIDGLR 183 (219)
T ss_pred EEEECC--CHHHHHHHHHHHHhcCCCC
Confidence 555554 577899999999999 874
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=129.96 Aligned_cols=141 Identities=21% Similarity=0.321 Sum_probs=106.6
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHH---HHhh-----CC--------------CeEecChHHhhcCCCE
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSK---ATGT-----MG--------------AKITFDNKEVTLNSEV 179 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e-----~G--------------v~v~~d~~eav~~ADI 179 (303)
.+||+|||+|.||.+ ++..+ +...+ .+.+ .| +..+.+..+++++||+
T Consensus 4 ~~~I~vIGaG~mG~~-iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDl 82 (311)
T PRK06130 4 IQNLAIIGAGTMGSG-IAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADL 82 (311)
T ss_pred ccEEEEECCCHHHHH-HHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCE
Confidence 568999999999995 44331 11111 1111 12 2455677778899999
Q ss_pred EEEeeCCcc--HHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHH
Q psy6714 180 IILAVKPHI--VPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDA 257 (303)
Q Consensus 180 VILAVpP~~--v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~ 257 (303)
||+|||++. ..+++.++.+.++++++|+|.++|+++..+.+.+....+++++||+.|..... ...+++++..+++.+
T Consensus 83 Vi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~-l~~i~~g~~t~~~~~ 161 (311)
T PRK06130 83 VIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIP-LVEVVRGDKTSPQTV 161 (311)
T ss_pred EEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCc-eEEEeCCCCCCHHHH
Confidence 999999874 67888888887777888889999999999998886546799999999876655 445667778899999
Q ss_pred HHHHHHHHhcCCc-EEcC
Q psy6714 258 QTVINLFKSVGTC-EEVP 274 (303)
Q Consensus 258 e~V~~Lfs~iG~~-v~vd 274 (303)
+.+.++|+.+|.. +.+.
T Consensus 162 ~~v~~l~~~~G~~~v~~~ 179 (311)
T PRK06130 162 ATTMALLRSIGKRPVLVK 179 (311)
T ss_pred HHHHHHHHHcCCEEEEEc
Confidence 9999999999985 4443
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.6e-13 Score=125.67 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=90.5
Q ss_pred CeEecChHHhhcCCCEEEEeeCCccH--HHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVKPHIV--PVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQ 241 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVpP~~v--~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~ 241 (303)
+..+++.. .+++||+||+|||++.. .+++.++.++++++++|+|.++|+++..|.+.++...+++++||+.|..+..
T Consensus 71 l~~~~~~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~ 149 (282)
T PRK05808 71 ITGTTDLD-DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMK 149 (282)
T ss_pred eEEeCCHH-HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCc
Confidence 34455554 57899999999987655 5888999888888999889999999999999886445899999999988887
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEc
Q psy6714 242 GASVFVRGSSASDQDAQTVINLFKSVGTC-EEV 273 (303)
Q Consensus 242 G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~v 273 (303)
++. ++.+...+++..+.+..+|+.+|+. +.+
T Consensus 150 ~ve-v~~g~~t~~e~~~~~~~l~~~lGk~pv~~ 181 (282)
T PRK05808 150 LVE-IIRGLATSDATHEAVEALAKKIGKTPVEV 181 (282)
T ss_pred cEE-EeCCCCCCHHHHHHHHHHHHHcCCeeEEe
Confidence 775 6777889999999999999999985 444
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.7e-13 Score=134.92 Aligned_cols=152 Identities=16% Similarity=0.185 Sum_probs=112.0
Q ss_pred CCCcEEEEcCChhhHHHHHHHH---------hhcHHH---H-------------------hhCC-CeEecChHHhhcCCC
Q psy6714 131 NRSDKQIAGTTERGPGALIASL---------NIVSKA---T-------------------GTMG-AKITFDNKEVTLNSE 178 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al---------~r~~e~---l-------------------~e~G-v~v~~d~~eav~~AD 178 (303)
+.|||+|||+|.||.++....+ +...+. + ...| +..+.++.+++++||
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD 82 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGAD 82 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCC
Confidence 4578999999999996533321 111111 1 0123 567778888999999
Q ss_pred EEEEeeCCcc-HH-HHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHH
Q psy6714 179 VIILAVKPHI-VP-VALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQD 256 (303)
Q Consensus 179 IVILAVpP~~-v~-~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~ 256 (303)
+||.|||++. ++ .++.++...++++.+|+|.++|++...+.+.+.....++..||+.|..... .+.+++++..+++.
T Consensus 83 ~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~-Lvevv~g~~t~~e~ 161 (495)
T PRK07531 83 WIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLP-LVELVGGGKTSPET 161 (495)
T ss_pred EEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCc-eEEEcCCCCCCHHH
Confidence 9999999775 44 456777777778888889999999999988886545789999988875443 44677888888999
Q ss_pred HHHHHHHHHhcCCcEEcCCCCchhhhh
Q psy6714 257 AQTVINLFKSVGTCEEVPEYLLDGITG 283 (303)
Q Consensus 257 ~e~V~~Lfs~iG~~v~vdE~~~Da~tA 283 (303)
++.+..+|+.+|+..++-+++++-+++
T Consensus 162 ~~~~~~~~~~lG~~~v~~~k~~~gfi~ 188 (495)
T PRK07531 162 IRRAKEILREIGMKPVHIAKEIDAFVG 188 (495)
T ss_pred HHHHHHHHHHcCCEEEeecCCCcchhH
Confidence 999999999999876655555554443
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-13 Score=117.78 Aligned_cols=137 Identities=18% Similarity=0.282 Sum_probs=91.0
Q ss_pred CCcEEEEcCChhhHHHHHHH---------HhhcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCC-ccHHHHHHh--h
Q psy6714 132 RSDKQIAGTTERGPGALIAS---------LNIVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKP-HIVPVALND--I 196 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a---------l~r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL~e--I 196 (303)
||||||||+|.||.++.... +++..+ .+.+.|+..+.++.|++++||+||+||++ .++++++.+ +
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i 80 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENI 80 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHH
Confidence 78999999999999643332 233333 45567999999999999999999999985 779999988 8
Q ss_pred ccccCCCCEEEEecCCCcHH---HHHhhCC-CCCceEEE-ecCcHHhhhCCc-EEEEeCCCCCHHHHHHHHHHHHhcCCc
Q psy6714 197 KPVFNESNLLISVAGGVPIK---NMEQALP-KNSRIIRA-MPNTPALVRQGA-SVFVRGSSASDQDAQTVINLFKSVGTC 270 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV~ie---~L~~~l~-~~~~VVr~-mPn~p~~v~~G~-til~~g~~~~~e~~e~V~~Lfs~iG~~ 270 (303)
.+.+.++++||.+. .++.+ .+.+.+. .+..++.+ +...+.....|. ++++.| +++.++.++.+|+.+|..
T Consensus 81 ~~~l~~g~iiid~s-T~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG---~~~~~~~~~~~l~~~~~~ 156 (163)
T PF03446_consen 81 LAGLRPGKIIIDMS-TISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGG---DEEAFERVRPLLEAMGKN 156 (163)
T ss_dssp GGGS-TTEEEEE-S-S--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES----HHHHHHHHHHHHHHEEE
T ss_pred hhccccceEEEecC-CcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccC---CHHHHHHHHHHHHHHhCC
Confidence 88888999998553 44443 4444442 22333322 223333444554 677776 788999999999999975
Q ss_pred EE
Q psy6714 271 EE 272 (303)
Q Consensus 271 v~ 272 (303)
++
T Consensus 157 v~ 158 (163)
T PF03446_consen 157 VY 158 (163)
T ss_dssp EE
T ss_pred ce
Confidence 43
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.9e-13 Score=127.67 Aligned_cols=144 Identities=17% Similarity=0.186 Sum_probs=108.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh---------cHH---HHhh-------C--C------CeEecChHHhhcCCCEEEEee
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI---------VSK---ATGT-------M--G------AKITFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r---------~~e---~l~e-------~--G------v~v~~d~~eav~~ADIVILAV 184 (303)
+|||+|||.|.||+ .++..+.+ +.+ .+.+ + + +..+.|..++++++|+||+||
T Consensus 7 ~mkI~IiGaGa~G~-alA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilav 85 (341)
T PRK12439 7 EPKVVVLGGGSWGT-TVASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGV 85 (341)
T ss_pred CCeEEEECCCHHHH-HHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEe
Confidence 68999999999999 45543211 111 1111 1 1 234567777889999999999
Q ss_pred CCccHHHHHHhhccccCCCCEEEEecCCCcH-------HHHHhhCCCCCceEEEecCcHHhhhCCcEE-EEeCCCCCHHH
Q psy6714 185 KPHIVPVALNDIKPVFNESNLLISVAGGVPI-------KNMEQALPKNSRIIRAMPNTPALVRQGASV-FVRGSSASDQD 256 (303)
Q Consensus 185 pP~~v~~VL~eI~~~L~~g~IVVSiaaGV~i-------e~L~~~l~~~~~VVr~mPn~p~~v~~G~ti-l~~g~~~~~e~ 256 (303)
|++.++++++++.++++++++|||+++|+.. +.+++.++.....+..+||++.++..|.+. ++.+ ..+++.
T Consensus 86 ps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~via-~~~~~~ 164 (341)
T PRK12439 86 PSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLA-MPDQHL 164 (341)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEEE-eCCHHH
Confidence 9999999999999999888899999999986 577777764334678889999999888642 2332 236778
Q ss_pred HHHHHHHHHhcCCcEEcCCCC
Q psy6714 257 AQTVINLFKSVGTCEEVPEYL 277 (303)
Q Consensus 257 ~e~V~~Lfs~iG~~v~vdE~~ 277 (303)
.+.+.++|+.-|..++++++.
T Consensus 165 ~~~v~~lf~~~~~~v~~s~Di 185 (341)
T PRK12439 165 ATRLSPLFRTRRFRVYTTDDV 185 (341)
T ss_pred HHHHHHHhCCCCEEEEEcCch
Confidence 899999999999888776654
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.1e-13 Score=124.36 Aligned_cols=143 Identities=19% Similarity=0.223 Sum_probs=102.3
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHH---HHhhC--------------CCeEecChHHhhcCCCEEEEee
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSK---ATGTM--------------GAKITFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e~--------------Gv~v~~d~~eav~~ADIVILAV 184 (303)
||||+|||+|.||.. ++..+ ++..+ .+.+. ++....+..++++++|+||+||
T Consensus 1 mmkI~iiG~G~mG~~-~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v 79 (325)
T PRK00094 1 MMKIAVLGAGSWGTA-LAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAV 79 (325)
T ss_pred CCEEEEECCCHHHHH-HHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeC
Confidence 689999999999995 44332 12222 23332 3555667777889999999999
Q ss_pred CCccHHHHHHhhccccCCCCEEEEecCCCcH-------HHHHhhCCCC-CceEEEecCcHHhhhCCc-EEEEeCCCCCHH
Q psy6714 185 KPHIVPVALNDIKPVFNESNLLISVAGGVPI-------KNMEQALPKN-SRIIRAMPNTPALVRQGA-SVFVRGSSASDQ 255 (303)
Q Consensus 185 pP~~v~~VL~eI~~~L~~g~IVVSiaaGV~i-------e~L~~~l~~~-~~VVr~mPn~p~~v~~G~-til~~g~~~~~e 255 (303)
|++++.+++.++.+.+.++++||++++|+.. +.+++.++.. ...+...|+.+.....+. ..+..+ ..+.+
T Consensus 80 ~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~-~~~~~ 158 (325)
T PRK00094 80 PSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIA-STDEE 158 (325)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEE-eCCHH
Confidence 9999999999999888889999999988885 3455555531 235667799887766553 222222 23678
Q ss_pred HHHHHHHHHHhcCCcEEcCCC
Q psy6714 256 DAQTVINLFKSVGTCEEVPEY 276 (303)
Q Consensus 256 ~~e~V~~Lfs~iG~~v~vdE~ 276 (303)
..+.+.++|+..|..+.+.++
T Consensus 159 ~~~~~~~~l~~~~~~~~~~~d 179 (325)
T PRK00094 159 LAERVQELFHSPYFRVYTNTD 179 (325)
T ss_pred HHHHHHHHhCCCCEEEEecCC
Confidence 889999999999986666544
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=122.39 Aligned_cols=106 Identities=17% Similarity=0.232 Sum_probs=85.7
Q ss_pred ecChHHhhcCCCEEEEeeC--CccHHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcE
Q psy6714 167 TFDNKEVTLNSEVIILAVK--PHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGAS 244 (303)
Q Consensus 167 ~~d~~eav~~ADIVILAVp--P~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~t 244 (303)
..++.+++++||+||+||+ ++....++.++.+.++++++|+|.++++++..+.+.+....+++++|+..|..... .+
T Consensus 74 ~~~~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~-lv 152 (295)
T PLN02545 74 CTTNLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMK-LV 152 (295)
T ss_pred eeCCHHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCc-eE
Confidence 3444567899999999998 77777888888888888889889999999999999876445788998776654433 35
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCcEEc
Q psy6714 245 VFVRGSSASDQDAQTVINLFKSVGTCEEV 273 (303)
Q Consensus 245 il~~g~~~~~e~~e~V~~Lfs~iG~~v~v 273 (303)
.++.+...+++..+.++.+|+.+|+.+.+
T Consensus 153 eiv~g~~t~~e~~~~~~~ll~~lG~~~~~ 181 (295)
T PLN02545 153 EIIRGADTSDEVFDATKALAERFGKTVVC 181 (295)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeeEE
Confidence 66777888999999999999999986544
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.8e-13 Score=125.83 Aligned_cols=139 Identities=14% Similarity=0.197 Sum_probs=96.5
Q ss_pred CcEEEEcCChhhHHHHHHH---------HhhcHHH----HhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHHH---h
Q psy6714 133 SDKQIAGTTERGPGALIAS---------LNIVSKA----TGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVALN---D 195 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~a---------l~r~~e~----l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL~---e 195 (303)
|||+|||||+||.+|..+. ++++.++ +++.|.....++.|+++.+|+||+||+ +.++++|+. .
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 6899999999999865554 2444444 457799999999999999999999996 788999994 5
Q ss_pred hccccCCCCEEEEecCCCcH---HHHHhhCCC-CCceEEE--ecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCC
Q psy6714 196 IKPVFNESNLLISVAGGVPI---KNMEQALPK-NSRIIRA--MPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGT 269 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~i---e~L~~~l~~-~~~VVr~--mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~ 269 (303)
+...++++++||.+ +.++. ..+.+.+.. +..++.. .-..+.......++++.+ +++.++.++.+|+.+|.
T Consensus 81 ~~~~~~~G~i~IDm-STisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG---~~~~f~r~~pvl~~~g~ 156 (286)
T COG2084 81 LLEGLKPGAIVIDM-STISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGG---DAEAFERAKPVLEAMGK 156 (286)
T ss_pred hhhcCCCCCEEEEC-CCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCC---CHHHHHHHHHHHHHhcC
Confidence 77777899999844 34544 344444321 2222222 011122222335677776 88999999999999998
Q ss_pred -cEEcCC
Q psy6714 270 -CEEVPE 275 (303)
Q Consensus 270 -~v~vdE 275 (303)
.+.+-+
T Consensus 157 ~i~~~G~ 163 (286)
T COG2084 157 NIVHVGP 163 (286)
T ss_pred ceEEECC
Confidence 556644
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.5e-13 Score=104.19 Aligned_cols=77 Identities=34% Similarity=0.533 Sum_probs=59.6
Q ss_pred cEEEEcCChhhHHHHHHHH-h-------------hcHHH----HhhCCCeEec-ChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 134 DKQIAGTTERGPGALIASL-N-------------IVSKA----TGTMGAKITF-DNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 134 kIgIIGlG~MG~~~La~al-~-------------r~~e~----l~e~Gv~v~~-d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
||||||.|+||.+ |+..+ + +..++ ..+.++.+.. ++.++++++|+|||||||+++.+++.
T Consensus 1 kI~iIG~G~mg~a-l~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~ 79 (96)
T PF03807_consen 1 KIGIIGAGNMGSA-LARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVLS 79 (96)
T ss_dssp EEEEESTSHHHHH-HHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHH
T ss_pred CEEEECCCHHHHH-HHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHHH
Confidence 7999999999994 55432 1 12222 2466777666 88999999999999999999999999
Q ss_pred hhccccCCCCEEEEecCC
Q psy6714 195 DIKPVFNESNLLISVAGG 212 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaG 212 (303)
++ ..+.++++|||+++|
T Consensus 80 ~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 80 EI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HH-HHHHTTSEEEEESTT
T ss_pred HH-hhccCCCEEEEeCCC
Confidence 99 556689999999987
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=115.24 Aligned_cols=156 Identities=19% Similarity=0.260 Sum_probs=106.0
Q ss_pred CcEEEEcCChhhHHHHHHHHh----------hcH---HHHhhCCCeE-----------ecChHHhhcCCCEEEEeeCCcc
Q psy6714 133 SDKQIAGTTERGPGALIASLN----------IVS---KATGTMGAKI-----------TFDNKEVTLNSEVIILAVKPHI 188 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~----------r~~---e~l~e~Gv~v-----------~~d~~eav~~ADIVILAVpP~~ 188 (303)
|||+|||+|.||+ .++..+. +.. +.+.+.|+.+ ..+..++ +++|+||+|||+++
T Consensus 1 m~I~IiG~G~~G~-~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~~ 78 (304)
T PRK06522 1 MKIAILGAGAIGG-LFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAYQ 78 (304)
T ss_pred CEEEEECCCHHHH-HHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccccc
Confidence 7899999999999 5654421 111 2333445532 2334444 89999999999999
Q ss_pred HHHHHHhhccccCCCCEEEEecCCCc-HHHHHhhCCCCCceEEE---------ecCcHHhhhCCcEEEEeCCCCCHHHHH
Q psy6714 189 VPVALNDIKPVFNESNLLISVAGGVP-IKNMEQALPKNSRIIRA---------MPNTPALVRQGASVFVRGSSASDQDAQ 258 (303)
Q Consensus 189 v~~VL~eI~~~L~~g~IVVSiaaGV~-ie~L~~~l~~~~~VVr~---------mPn~p~~v~~G~til~~g~~~~~e~~e 258 (303)
+.++++++.+.+.++++||++.+|+. .+.+.+.++. ..++.. .|++....+.|...+...+ ...+..+
T Consensus 79 ~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~~-~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~-~~~~~~~ 156 (304)
T PRK06522 79 LPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIGP-ERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPD-GESAAAE 156 (304)
T ss_pred HHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcCc-ccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCC-CCcHHHH
Confidence 99999999998888889999999997 4667777764 234322 2443333344443332222 2234577
Q ss_pred HHHHHHHhcCCcEEcCCC-------------CchhhhhhccchHHHH
Q psy6714 259 TVINLFKSVGTCEEVPEY-------------LLDGITGLSGSGPAYR 292 (303)
Q Consensus 259 ~V~~Lfs~iG~~v~vdE~-------------~~Da~tAlsGsgPAf~ 292 (303)
.+.++|+..|..++++++ .++.++|+.+|.++-+
T Consensus 157 ~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l 203 (304)
T PRK06522 157 ALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGEL 203 (304)
T ss_pred HHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHH
Confidence 899999999988777765 4677888988876643
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.1e-12 Score=116.72 Aligned_cols=139 Identities=18% Similarity=0.270 Sum_probs=101.3
Q ss_pred HhhCCCeE-ecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCCCcHH---HHHhhCCCCCceEEEecC
Q psy6714 159 TGTMGAKI-TFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIK---NMEQALPKNSRIIRAMPN 234 (303)
Q Consensus 159 l~e~Gv~v-~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie---~L~~~l~~~~~VVr~mPn 234 (303)
..+.|+.. ..+..++++++|+||||||+..+.++++++.++++++++ |+++++++.. .+++.++.+..+|..||+
T Consensus 27 a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~~~i-v~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM 105 (258)
T PF02153_consen 27 ALELGIIDEASTDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLKPGAI-VTDVGSVKAPIVEAMERLLPEGVRFVGGHPM 105 (258)
T ss_dssp HHHTTSSSEEESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-TTSE-EEE--S-CHHHHHHHHHHHTSSGEEEEEEES
T ss_pred HHHCCCeeeccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCCCcE-EEEeCCCCHHHHHHHHHhcCcccceeecCCC
Confidence 44677742 223367899999999999999999999999999988875 5577889874 455666655688999988
Q ss_pred cHHh-----------hhCCcEEEEeCCCCCHHHHHHHHHHHHhcCC-cEEcCCCCchhhhhhccchHHHHHHHHHh
Q psy6714 235 TPAL-----------VRQGASVFVRGSSASDQDAQTVINLFKSVGT-CEEVPEYLLDGITGLSGSGPAYRYEVTSN 298 (303)
Q Consensus 235 ~p~~-----------v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~-~v~vdE~~~Da~tAlsGsgPAf~~~~ie~ 298 (303)
...+ +.+...++|+....+++..+.++++|+.+|. +++++.++||.++|++++.|-++...+-.
T Consensus 106 ~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~eeHD~~~A~vshlpH~~a~al~~ 181 (258)
T PF02153_consen 106 AGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEMDAEEHDRIMAYVSHLPHLLASALAN 181 (258)
T ss_dssp CSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE--HHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6541 1123467888877788999999999999996 57789999999999999999998877655
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.8e-12 Score=118.75 Aligned_cols=142 Identities=15% Similarity=0.099 Sum_probs=98.8
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHH---HHhhC--------C------CeEecChHHhhcCCCEEEEee
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSK---ATGTM--------G------AKITFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e~--------G------v~v~~d~~eav~~ADIVILAV 184 (303)
+|||+|||+|.||.+ ++..+ ++..+ .+... | +..+.++.++++++|+||+||
T Consensus 4 ~m~I~iIG~G~mG~~-ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v 82 (328)
T PRK14618 4 GMRVAVLGAGAWGTA-LAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAV 82 (328)
T ss_pred CCeEEEECcCHHHHH-HHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEEC
Confidence 689999999999995 44331 22222 22221 3 345667888889999999999
Q ss_pred CCccHHHHHHhhccccCCCCEEEEecCCCc-----HHHHHhhCCC---CCceEEEecCcHHhhhCCcEEEEeCCCCCHHH
Q psy6714 185 KPHIVPVALNDIKPVFNESNLLISVAGGVP-----IKNMEQALPK---NSRIIRAMPNTPALVRQGASVFVRGSSASDQD 256 (303)
Q Consensus 185 pP~~v~~VL~eI~~~L~~g~IVVSiaaGV~-----ie~L~~~l~~---~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~ 256 (303)
|+++++++++.++ ++.+||++++|+. ...+.+.+.. ....+...|+.+..+..+...++.....+++.
T Consensus 83 ~~~~~~~v~~~l~----~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~~~~ 158 (328)
T PRK14618 83 PSKALRETLAGLP----RALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPEPGL 158 (328)
T ss_pred chHHHHHHHHhcC----cCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCCHHH
Confidence 9999998886654 5678899999876 4455555432 22346778999988877643222112337888
Q ss_pred HHHHHHHHHhcCCcEEcCCCCc
Q psy6714 257 AQTVINLFKSVGTCEEVPEYLL 278 (303)
Q Consensus 257 ~e~V~~Lfs~iG~~v~vdE~~~ 278 (303)
.+.++++|+..|..++++++..
T Consensus 159 ~~~v~~ll~~~~~~v~~~~di~ 180 (328)
T PRK14618 159 ARRVQAAFSGPSFRVYTSRDRV 180 (328)
T ss_pred HHHHHHHhCCCcEEEEecCCcc
Confidence 9999999999998887765543
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=111.13 Aligned_cols=136 Identities=13% Similarity=0.108 Sum_probs=101.0
Q ss_pred CcEEEEcC-ChhhHHHHHHHHhhcHHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecC
Q psy6714 133 SDKQIAGT-TERGPGALIASLNIVSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAG 211 (303)
Q Consensus 133 mkIgIIGl-G~MG~~~La~al~r~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaa 211 (303)
|||+|||. |.||. .|+. .+.+.|+.+. +.+||+||||||+..+.++++++.+ + |.+++
T Consensus 1 ~~~~iiG~~G~mG~-~~~~-------~~~~~g~~v~------~~~~DlVilavPv~~~~~~i~~~~~------~-v~Dv~ 59 (197)
T PRK06444 1 MMEIIIGKNGRLGR-VLCS-------ILDDNGLGVY------IKKADHAFLSVPIDAALNYIESYDN------N-FVEIS 59 (197)
T ss_pred CEEEEEecCCcHHH-HHHH-------HHHhCCCEEE------ECCCCEEEEeCCHHHHHHHHHHhCC------e-EEecc
Confidence 78999985 99999 5643 4556677764 5789999999999999999988752 4 55888
Q ss_pred CCcHHHHHhhCCCCCceEEEecCcHHhhh-CC---cEEEEeCCCCCHHHHHHHHHHHHhcCC-cEEcCCCCchhhhhhcc
Q psy6714 212 GVPIKNMEQALPKNSRIIRAMPNTPALVR-QG---ASVFVRGSSASDQDAQTVINLFKSVGT-CEEVPEYLLDGITGLSG 286 (303)
Q Consensus 212 GV~ie~L~~~l~~~~~VVr~mPn~p~~v~-~G---~til~~g~~~~~e~~e~V~~Lfs~iG~-~v~vdE~~~Da~tAlsG 286 (303)
+++....+ . ...++..||...-... .+ ..+++ .+..+++..+.++++|+ |. .++++.++||.++|+++
T Consensus 60 SvK~~i~~-~---~~~~vg~HPMfGp~~a~~~lf~~~iv~-~~~~~~~~~~~~~~l~~--G~~~~~~t~eeHD~~~A~is 132 (197)
T PRK06444 60 SVKWPFKK-Y---SGKIVSIHPLFGPMSYNDGVHRTVIFI-NDISRDNYLNEINEMFR--GYHFVEMTADEHDLLMSEIM 132 (197)
T ss_pred ccCHHHHH-h---cCCEEecCCCCCCCcCcccccceEEEE-CCCCCHHHHHHHHHHHc--CCEEEEeCHHHHHHHHHHHH
Confidence 99886433 2 2368888887642211 22 23333 45667788899999998 65 57789999999999999
Q ss_pred chHHHHHHHH
Q psy6714 287 SGPAYRYEVT 296 (303)
Q Consensus 287 sgPAf~~~~i 296 (303)
..|-++...+
T Consensus 133 hLpH~ia~al 142 (197)
T PRK06444 133 VKPYIISMIL 142 (197)
T ss_pred HHHHHHHHHH
Confidence 9998876554
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-11 Score=118.54 Aligned_cols=142 Identities=20% Similarity=0.280 Sum_probs=107.5
Q ss_pred HhhCCCeEecChHHhhcCCCEEEEeeCCcc-HHHHHHhhccccCCCCEEEEecCCCcH---HHHHhhCCCCCceEEEecC
Q psy6714 159 TGTMGAKITFDNKEVTLNSEVIILAVKPHI-VPVALNDIKPVFNESNLLISVAGGVPI---KNMEQALPKNSRIIRAMPN 234 (303)
Q Consensus 159 l~e~Gv~v~~d~~eav~~ADIVILAVpP~~-v~~VL~eI~~~L~~g~IVVSiaaGV~i---e~L~~~l~~~~~VVr~mPn 234 (303)
+.+.|+.++.++.+++++||+||+|||+.. +++++.++.+.+.++++||+++.+... +.+.+.++.....++++++
T Consensus 64 l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~ 143 (342)
T PRK12557 64 VEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSM 143 (342)
T ss_pred HHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeec
Confidence 456788888888899999999999999888 899999999889888888866544332 3445566432345566666
Q ss_pred cHHhh----hCCcEEEEeC-----CCCCHHHHHHHHHHHHhcCC-cEEcCCCCchh-------hhhhccchHHHHHHHHH
Q psy6714 235 TPALV----RQGASVFVRG-----SSASDQDAQTVINLFKSVGT-CEEVPEYLLDG-------ITGLSGSGPAYRYEVTS 297 (303)
Q Consensus 235 ~p~~v----~~G~til~~g-----~~~~~e~~e~V~~Lfs~iG~-~v~vdE~~~Da-------~tAlsGsgPAf~~~~ie 297 (303)
+|+.+ ..+.++++.+ ...+++.++.++++|+.+|. ++++++...+. +++++.++++++|.+.+
T Consensus 144 ~p~~v~Gae~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~ 223 (342)
T PRK12557 144 HPAAVPGTPQHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGT 223 (342)
T ss_pred CCccccccccchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66543 2345565532 23478889999999999998 56778777777 99999999999999988
Q ss_pred hhh
Q psy6714 298 NEV 300 (303)
Q Consensus 298 ~~~ 300 (303)
.+.
T Consensus 224 ~~~ 226 (342)
T PRK12557 224 KII 226 (342)
T ss_pred HhC
Confidence 764
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.4e-11 Score=111.64 Aligned_cols=107 Identities=22% Similarity=0.293 Sum_probs=87.5
Q ss_pred EecChHHhhcCCCEEEEeeCCcc--HHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCc
Q psy6714 166 ITFDNKEVTLNSEVIILAVKPHI--VPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGA 243 (303)
Q Consensus 166 v~~d~~eav~~ADIVILAVpP~~--v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~ 243 (303)
...+. +++++||+||+||+++. ..++++++.+.++++++|+|.++|+.+..+.+.+....+++.+|++.|..+..++
T Consensus 76 ~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~v 154 (291)
T PRK06035 76 TSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLI 154 (291)
T ss_pred eeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccE
Confidence 33444 57889999999998775 5678888888888899999999999999999988644579999999887776666
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCCc-EEcC
Q psy6714 244 SVFVRGSSASDQDAQTVINLFKSVGTC-EEVP 274 (303)
Q Consensus 244 til~~g~~~~~e~~e~V~~Lfs~iG~~-v~vd 274 (303)
-+ +.+...+++.++.+..+++.+|+. +.+.
T Consensus 155 Ev-~~g~~T~~e~~~~~~~~~~~lgk~~v~v~ 185 (291)
T PRK06035 155 EV-VRAALTSEETFNTTVELSKKIGKIPIEVA 185 (291)
T ss_pred EE-eCCCCCCHHHHHHHHHHHHHcCCeEEEeC
Confidence 54 577888999999999999999985 4453
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.2e-11 Score=111.99 Aligned_cols=140 Identities=11% Similarity=0.188 Sum_probs=94.0
Q ss_pred CcEEEEcCChhhHHHHHHHH---------hhcHH---HHhhCCCeEecChHHhhcC---CCEEEEeeCCc-cHHHHHHhh
Q psy6714 133 SDKQIAGTTERGPGALIASL---------NIVSK---ATGTMGAKITFDNKEVTLN---SEVIILAVKPH-IVPVALNDI 196 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al---------~r~~e---~l~e~Gv~v~~d~~eav~~---ADIVILAVpP~-~v~~VL~eI 196 (303)
|+|||||+|.||.+|..... +++.+ .+.+.|+....++++++++ +|+||+|||+. ++++++.++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i 80 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDL 80 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHH
Confidence 68999999999996433221 22322 3456788888888888876 69999999987 899999999
Q ss_pred ccccCCCCEEEEecCCC--cHHHHHhhCC-CCCceEEE-ecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCC---
Q psy6714 197 KPVFNESNLLISVAGGV--PIKNMEQALP-KNSRIIRA-MPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGT--- 269 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV--~ie~L~~~l~-~~~~VVr~-mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~--- 269 (303)
.+.++++++||.+.... ....+.+.+. .+..++.+ +...+.....|.++++.| +++.++.++++|+.+|.
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG---~~~~~~~~~~~l~~~~~~~~ 157 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGG---DKEIYDRLEPVFKALAPEGP 157 (299)
T ss_pred hccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecC---CHHHHHHHHHHHHHhcCcCC
Confidence 88888899999664332 3344444442 12223321 112233334566666665 78899999999999996
Q ss_pred -cEEcCC
Q psy6714 270 -CEEVPE 275 (303)
Q Consensus 270 -~v~vdE 275 (303)
.+.+.+
T Consensus 158 ~~~~~G~ 164 (299)
T PRK12490 158 GYVHAGP 164 (299)
T ss_pred cEEEECC
Confidence 455543
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.4e-11 Score=112.74 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=93.7
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcHHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccc-cCCCCEEEEe
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNIVSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPV-FNESNLLISV 209 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~-L~~g~IVVSi 209 (303)
+.|||+|||+|.||.+ ++..+........-++-....+..++++++|+||+|||...+.++++++.++ ++++++||++
T Consensus 3 ~~m~I~iiG~G~~G~~-lA~~l~~~G~~V~~~~r~~~~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~~~ivi~~ 81 (308)
T PRK14619 3 QPKTIAILGAGAWGST-LAGLASANGHRVRVWSRRSGLSLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPPETIIVTA 81 (308)
T ss_pred CCCEEEEECccHHHHH-HHHHHHHCCCEEEEEeCCCCCCHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 5689999999999994 6544322110000000001245678889999999999999999999988764 6778899998
Q ss_pred cCCCcHH-------HHHhhCCCCCceE-EEecCcHHhhhCCc---EEEEeCCCCCHHHHHHHHHHHHhcCCcEEcCCC
Q psy6714 210 AGGVPIK-------NMEQALPKNSRII-RAMPNTPALVRQGA---SVFVRGSSASDQDAQTVINLFKSVGTCEEVPEY 276 (303)
Q Consensus 210 aaGV~ie-------~L~~~l~~~~~VV-r~mPn~p~~v~~G~---til~~g~~~~~e~~e~V~~Lfs~iG~~v~vdE~ 276 (303)
+.|++.+ .+...+.. .+++ -..|+.+.++..+. ++++.+ +.+..+.++++|+..|..++...+
T Consensus 82 s~gi~~~~~~~~s~~~~~~~~~-~~v~~i~gp~~a~ei~~~~~~~~~~ag~---~~~~~~~v~~ll~~~~~~~~~~~d 155 (308)
T PRK14619 82 TKGLDPETTRTPSQIWQAAFPN-HPVVVLSGPNLSKEIQQGLPAATVVASR---DLAAAETVQQIFSSERFRVYTNSD 155 (308)
T ss_pred CCcccCCCCcCHHHHHHHHcCC-CceEEEECCCcHHHHhcCCCeEEEEEeC---CHHHHHHHHHHhCCCcEEEEecCC
Confidence 8777642 33444442 4554 23477776665442 233333 788899999999999976655443
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-10 Score=108.25 Aligned_cols=146 Identities=10% Similarity=0.122 Sum_probs=103.0
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHH--------------HHhhCCC-------------eEecChHHhh
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSK--------------ATGTMGA-------------KITFDNKEVT 174 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e--------------~l~e~Gv-------------~v~~d~~eav 174 (303)
+|+|+|||+|.||.+ ++..+ ++..+ .+.+.|. ..+.+..+++
T Consensus 2 ~~~V~VIG~G~mG~~-iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~ 80 (308)
T PRK06129 2 MGSVAIIGAGLIGRA-WAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAV 80 (308)
T ss_pred CcEEEEECccHHHHH-HHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence 468999999999995 44331 11111 1223442 5667888888
Q ss_pred cCCCEEEEeeCCc--cHHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCC
Q psy6714 175 LNSEVIILAVKPH--IVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSA 252 (303)
Q Consensus 175 ~~ADIVILAVpP~--~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~ 252 (303)
++||+||+|++.. ....++.++.....++.+|+|...+.....+.+.+.....++..||..|.... ....++++...
T Consensus 81 ~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~-~lveiv~~~~t 159 (308)
T PRK06129 81 ADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLI-PVVEVVPAPWT 159 (308)
T ss_pred CCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccC-ceEEEeCCCCC
Confidence 9999999999865 35566677776666777777888888888888887643467777777653221 24457777788
Q ss_pred CHHHHHHHHHHHHhcCC-cEEcCCCCch
Q psy6714 253 SDQDAQTVINLFKSVGT-CEEVPEYLLD 279 (303)
Q Consensus 253 ~~e~~e~V~~Lfs~iG~-~v~vdE~~~D 279 (303)
+++.++.++++|+.+|+ ++.+..+...
T Consensus 160 ~~~~~~~~~~~~~~lG~~~v~v~~~~~G 187 (308)
T PRK06129 160 APATLARAEALYRAAGQSPVRLRREIDG 187 (308)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCcc
Confidence 99999999999999997 4666544333
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=109.62 Aligned_cols=108 Identities=16% Similarity=0.239 Sum_probs=79.8
Q ss_pred CeEecChHHhhcCCCEEEEeeCCc--cHHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVKPH--IVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQ 241 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVpP~--~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~ 241 (303)
+....+. +.+++||+||+|||.+ ....+++++.+.++++++|+|.++++++..+.+.+....+++.+|+..|..+..
T Consensus 72 i~~~~~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~ 150 (292)
T PRK07530 72 ISTATDL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMK 150 (292)
T ss_pred eEeeCCH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCc
Confidence 3445555 4578999999999854 455777888888888999999999999988888765323566655444433334
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEc
Q psy6714 242 GASVFVRGSSASDQDAQTVINLFKSVGTCEEV 273 (303)
Q Consensus 242 G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~v 273 (303)
++ -++.+...+++.++.+.++|+.+|+...+
T Consensus 151 ~v-ei~~g~~t~~~~~~~~~~~~~~~gk~~v~ 181 (292)
T PRK07530 151 LV-ELIRGIATDEATFEAAKEFVTKLGKTITV 181 (292)
T ss_pred eE-EEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 43 45667788999999999999999985444
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.8e-11 Score=114.48 Aligned_cols=144 Identities=22% Similarity=0.254 Sum_probs=109.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh----------cHH-------------HHh----hCCCeEecChHHhhcCCCEEEEee
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI----------VSK-------------ATG----TMGAKITFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r----------~~e-------------~l~----e~Gv~v~~d~~eav~~ADIVILAV 184 (303)
+|||+|||.|.+|+ .|+..+.+ ..+ .+. ..++..+.|..+++++||+||++|
T Consensus 1 ~~kI~ViGaGswGT-ALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~av 79 (329)
T COG0240 1 MMKIAVIGAGSWGT-ALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAV 79 (329)
T ss_pred CceEEEEcCChHHH-HHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEEC
Confidence 58999999999999 57654211 111 111 123456788999999999999999
Q ss_pred CCccHHHHHHhhccccCCCCEEEEecCCCcH-------HHHHhhCCCCCceEEEecCcHHhhhCCcE-EEEeCCCCCHHH
Q psy6714 185 KPHIVPVALNDIKPVFNESNLLISVAGGVPI-------KNMEQALPKNSRIIRAMPNTPALVRQGAS-VFVRGSSASDQD 256 (303)
Q Consensus 185 pP~~v~~VL~eI~~~L~~g~IVVSiaaGV~i-------e~L~~~l~~~~~VVr~mPn~p~~v~~G~t-il~~g~~~~~e~ 256 (303)
|.+.++++++++++++.++.+||+++.|+.. +.+++.++...-++-+.||++.++.+|.+ .++. ...+++.
T Consensus 80 Ps~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~v-as~d~~~ 158 (329)
T COG0240 80 PSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVV-ASNDQEA 158 (329)
T ss_pred ChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEE-ecCCHHH
Confidence 9999999999999889899999999999975 45677888544566778999999998864 3333 3447888
Q ss_pred HHHHHHHHHhcCCcEEcCCCC
Q psy6714 257 AQTVINLFKSVGTCEEVPEYL 277 (303)
Q Consensus 257 ~e~V~~Lfs~iG~~v~vdE~~ 277 (303)
.+.++.+|++=-..++.+++.
T Consensus 159 a~~v~~~f~~~~Frvy~~~Dv 179 (329)
T COG0240 159 AEKVQALFSSPYFRVYTSTDV 179 (329)
T ss_pred HHHHHHHhCCCcEEEEecCch
Confidence 899999999854556665554
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.3e-11 Score=106.18 Aligned_cols=137 Identities=21% Similarity=0.329 Sum_probs=100.4
Q ss_pred CCcEEEEcCChhhHHHHHHHH-----------hhcHHHH----hhCCCe-EecChHHhhcCCCEEEEeeCCccHHHHHHh
Q psy6714 132 RSDKQIAGTTERGPGALIASL-----------NIVSKAT----GTMGAK-ITFDNKEVTLNSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-----------~r~~e~l----~e~Gv~-v~~d~~eav~~ADIVILAVpP~~v~~VL~e 195 (303)
||+|+|+|+|+||.+ |++.+ ++..+.+ +.++.. ...++.++++.+|||||+||-..+.+++++
T Consensus 1 m~~~~i~GtGniG~a-lA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~ 79 (211)
T COG2085 1 MMIIAIIGTGNIGSA-LALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAE 79 (211)
T ss_pred CcEEEEeccChHHHH-HHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHH
Confidence 789999999999994 76653 1222221 233443 236788999999999999999999999999
Q ss_pred hccccCCCCEEEEecCCCc-----------------HHHHHhhCCCCCceEEEecCcHHhhh-----C--CcEEEEeCCC
Q psy6714 196 IKPVFNESNLLISVAGGVP-----------------IKNMEQALPKNSRIIRAMPNTPALVR-----Q--GASVFVRGSS 251 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~-----------------ie~L~~~l~~~~~VVr~mPn~p~~v~-----~--G~til~~g~~ 251 (303)
+++.+. ++|||+.++++. .+.+.+.+|. .++|+.+.+++...- . ...+++.++
T Consensus 80 l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~-akVVkAFn~i~a~~l~~~~~~~~~~~v~vagD- 156 (211)
T COG2085 80 LRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPG-AKVVKAFNTIPAAVLADLAKPGGRRDVLVAGD- 156 (211)
T ss_pred HHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCC-cchhhhhcccCHHHhccCCCcCCceeEEEecC-
Confidence 998884 899999888742 2456677774 589999888775432 1 223444443
Q ss_pred CCHHHHHHHHHHHHhcCC-cEEc
Q psy6714 252 ASDQDAQTVINLFKSVGT-CEEV 273 (303)
Q Consensus 252 ~~~e~~e~V~~Lfs~iG~-~v~v 273 (303)
+.++++.|.+|.+.+|. .+.+
T Consensus 157 -D~~Ak~~v~~L~~~iG~~~ld~ 178 (211)
T COG2085 157 -DAEAKAVVAELAEDIGFRPLDA 178 (211)
T ss_pred -cHHHHHHHHHHHHhcCcceeec
Confidence 78899999999999996 4554
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-10 Score=107.99 Aligned_cols=133 Identities=14% Similarity=0.176 Sum_probs=89.8
Q ss_pred CcEEEEcCChhhHHHHHHHH----------hhcHH---HHhhCCCeEecChHHhh---cCCCEEEEeeCCccHHHHHHhh
Q psy6714 133 SDKQIAGTTERGPGALIASL----------NIVSK---ATGTMGAKITFDNKEVT---LNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e~Gv~v~~d~~eav---~~ADIVILAVpP~~v~~VL~eI 196 (303)
|||||||+|.||.+ ++..+ +++.+ .+.+.|+....+..+++ ..+|+||+|||+..+.++++++
T Consensus 1 M~Ig~IGlG~mG~~-la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l 79 (298)
T TIGR00872 1 MQLGLIGLGRMGAN-IVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEEL 79 (298)
T ss_pred CEEEEEcchHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHH
Confidence 68999999999994 55442 22333 34456766556665543 5689999999999999999999
Q ss_pred ccccCCCCEEEEecCCCcH--HHHHhhC-CCCCceEEEecC-cHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCC
Q psy6714 197 KPVFNESNLLISVAGGVPI--KNMEQAL-PKNSRIIRAMPN-TPALVRQGASVFVRGSSASDQDAQTVINLFKSVGT 269 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV~i--e~L~~~l-~~~~~VVr~mPn-~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~ 269 (303)
.+.++++++||++.++... ..+.+.+ ..+..++.+... .+.....|.++++.| +++.++.++.+|+.+|.
T Consensus 80 ~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG---~~~~~~~~~~~l~~~~~ 153 (298)
T TIGR00872 80 APTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGG---DGEAFARAEPLFADVAP 153 (298)
T ss_pred HhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCC---CHHHHHHHHHHHHHhcC
Confidence 9989889999987665433 3333333 223344443211 122233566555555 78899999999999985
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-10 Score=112.25 Aligned_cols=144 Identities=17% Similarity=0.139 Sum_probs=102.9
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhc-------------------------HHHHhh--------------CCCeEecChH
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNIV-------------------------SKATGT--------------MGAKITFDNK 171 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r~-------------------------~e~l~e--------------~Gv~v~~d~~ 171 (303)
..|||+|||.|.||+ .|+..+... .+.+.+ .++..+.|..
T Consensus 10 ~~~ki~ViGaG~wGt-AlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ 88 (365)
T PTZ00345 10 GPLKVSVIGSGNWGS-AISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK 88 (365)
T ss_pred CCCeEEEECCCHHHH-HHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence 468999999999999 466443111 011110 1344567888
Q ss_pred HhhcCCCEEEEeeCCccHHHHHHhhcc--ccCCCCEEEEecCCCcHH---------HHHhhCCCCCceEEEecCcHHhhh
Q psy6714 172 EVTLNSEVIILAVKPHIVPVALNDIKP--VFNESNLLISVAGGVPIK---------NMEQALPKNSRIIRAMPNTPALVR 240 (303)
Q Consensus 172 eav~~ADIVILAVpP~~v~~VL~eI~~--~L~~g~IVVSiaaGV~ie---------~L~~~l~~~~~VVr~mPn~p~~v~ 240 (303)
++++++|+||++|||+.++++++++++ ++.++.+|||+++|++.+ .+++.++. ...+-..||++.++.
T Consensus 89 eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~-~~~~LsGPs~A~Eva 167 (365)
T PTZ00345 89 EAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI-PCCALSGANVANDVA 167 (365)
T ss_pred HHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC-CeEEEECCCHHHHHH
Confidence 899999999999999999999999998 777777999999999743 34555642 233567799999998
Q ss_pred CCcE-EEEeCCCCCHHHHHHHHHHHHhcCCcEEcCCCC
Q psy6714 241 QGAS-VFVRGSSASDQDAQTVINLFKSVGTCEEVPEYL 277 (303)
Q Consensus 241 ~G~t-il~~g~~~~~e~~e~V~~Lfs~iG~~v~vdE~~ 277 (303)
.+.. .++.+ ..+.+..+.++++|+.=-..++.+++.
T Consensus 168 ~~~pt~~via-s~~~~~a~~~~~lf~~~~frvy~s~Dv 204 (365)
T PTZ00345 168 REEFSEATIG-CEDKDDALIWQRLFDRPYFKINCVPDV 204 (365)
T ss_pred cCCCcEEEEE-eCCHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 8753 33332 237788889999998655556665543
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.3e-10 Score=106.29 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=90.5
Q ss_pred CCeEecChHHhhcCCCEEEEeeCCc--cHHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhh
Q psy6714 163 GAKITFDNKEVTLNSEVIILAVKPH--IVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVR 240 (303)
Q Consensus 163 Gv~v~~d~~eav~~ADIVILAVpP~--~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~ 240 (303)
++..+.+..+++++||+||+|++.+ ...++++++.++++++++|+|..+++.+..+.+.+....+++.+|+..|.. .
T Consensus 71 ~i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~-~ 149 (287)
T PRK08293 71 RITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIW-K 149 (287)
T ss_pred CeEEeCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCC-c
Confidence 3456677788899999999999855 567888888888888888878778888888887765334678888766532 2
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEcCCCCchhhhh
Q psy6714 241 QGASVFVRGSSASDQDAQTVINLFKSVGTC-EEVPEYLLDGITG 283 (303)
Q Consensus 241 ~G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~vdE~~~Da~tA 283 (303)
....-++.+...+++.++.+.++++.+|+. +.+..+.++.++.
T Consensus 150 ~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~n 193 (287)
T PRK08293 150 NNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILN 193 (287)
T ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHH
Confidence 344566777888999999999999999985 6666555554443
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.3e-10 Score=105.62 Aligned_cols=139 Identities=14% Similarity=0.190 Sum_probs=95.1
Q ss_pred CcEEEEcCChhhHHHHHHHH---------hhcHH---HHhhCCCeEecChHHhhcC---CCEEEEeeCCc-cHHHHHHhh
Q psy6714 133 SDKQIAGTTERGPGALIASL---------NIVSK---ATGTMGAKITFDNKEVTLN---SEVIILAVKPH-IVPVALNDI 196 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al---------~r~~e---~l~e~Gv~v~~d~~eav~~---ADIVILAVpP~-~v~~VL~eI 196 (303)
|||||||+|.||.++..... +++.+ .+.+.|+.+..+..++++. +|+||+|||+. .+.+++.++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l 80 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDEL 80 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHH
Confidence 68999999999996433322 22322 3456788888888888775 69999999977 889999888
Q ss_pred ccccCCCCEEEEecCCCc--HHHHHhhCC-CCCceEEEecCc--HHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCC--
Q psy6714 197 KPVFNESNLLISVAGGVP--IKNMEQALP-KNSRIIRAMPNT--PALVRQGASVFVRGSSASDQDAQTVINLFKSVGT-- 269 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV~--ie~L~~~l~-~~~~VVr~mPn~--p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~-- 269 (303)
.+.++++++||++..+.. ...+.+.+. .+..++. .|.. +.....|.++++.| +++.++.++.+|+.+|.
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~d-apvsG~~~~a~~g~~~~~gG---~~~~~~~~~~~l~~~~~~~ 156 (301)
T PRK09599 81 APLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVD-VGTSGGVWGLERGYCLMIGG---DKEAVERLEPIFKALAPRA 156 (301)
T ss_pred HhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEe-CCCCcCHHHHhcCCeEEecC---CHHHHHHHHHHHHHHcccc
Confidence 888888899997655443 233444332 2334443 3332 22334566666655 78899999999999997
Q ss_pred ---cEEcCC
Q psy6714 270 ---CEEVPE 275 (303)
Q Consensus 270 ---~v~vdE 275 (303)
.+++.+
T Consensus 157 ~~~~~~~G~ 165 (301)
T PRK09599 157 EDGYLHAGP 165 (301)
T ss_pred cCCeEeECC
Confidence 355554
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.6e-11 Score=102.02 Aligned_cols=104 Identities=15% Similarity=0.276 Sum_probs=65.0
Q ss_pred ccCCCcEEEEcCChhhHHHHHHHHhh-----------cH---HHHh-hCCCeEecChHHhhcCCCEEEEeeCCccHHHHH
Q psy6714 129 RWNRSDKQIAGTTERGPGALIASLNI-----------VS---KATG-TMGAKITFDNKEVTLNSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 129 ~~~~mkIgIIGlG~MG~~~La~al~r-----------~~---e~l~-e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL 193 (303)
|..+|||+|||.|.+|. .|++.+.+ .. +++. ..+-....+..++++++|+|||+||++.+.+++
T Consensus 7 ~~~~l~I~iIGaGrVG~-~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~va 85 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGT-ALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEVA 85 (127)
T ss_dssp -----EEEEECTSCCCC-HHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHHH
T ss_pred CCCccEEEEECCCHHHH-HHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHHH
Confidence 44589999999999999 57776432 11 2222 234444466778899999999999999999999
Q ss_pred Hhhccc--cCCCCEEEEecCCCcHHHHHhhCCCCCceEEEec
Q psy6714 194 NDIKPV--FNESNLLISVAGGVPIKNMEQALPKNSRIIRAMP 233 (303)
Q Consensus 194 ~eI~~~--L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mP 233 (303)
++|... +.++++||++++..+.+.|+..-..++.+..+||
T Consensus 86 ~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 86 EQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp HHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred HHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 999876 7789999999999998887765544456666665
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-10 Score=109.80 Aligned_cols=139 Identities=18% Similarity=0.192 Sum_probs=92.0
Q ss_pred CcEEEEcCChhhHHHHHHHHh---------hc--HHHHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHHHh---hc
Q psy6714 133 SDKQIAGTTERGPGALIASLN---------IV--SKATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVALND---IK 197 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~---------r~--~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL~e---I~ 197 (303)
|||||||+|+||.+|.....+ +. .+.+.+.|+....++.+++++||+||+|||.. ++++++.. +.
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~ 80 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT 80 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence 689999999999964332211 11 23455678888888999999999999999854 77888743 44
Q ss_pred cccCCCCEEEEecCCCcHH---HHHhhCC-CCCceEEEecCcHH--hhhCCc-EEEEeCCCCCHHHHHHHHHHHHhcCC-
Q psy6714 198 PVFNESNLLISVAGGVPIK---NMEQALP-KNSRIIRAMPNTPA--LVRQGA-SVFVRGSSASDQDAQTVINLFKSVGT- 269 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV~ie---~L~~~l~-~~~~VVr~mPn~p~--~v~~G~-til~~g~~~~~e~~e~V~~Lfs~iG~- 269 (303)
..+.++++||.+ +.++.. .+.+.+. .+..++.. |-... ....|. ++++.+ +++.++.++++|+.+|.
T Consensus 81 ~~~~~g~ivvd~-sT~~p~~~~~~~~~~~~~G~~~vda-PVsGg~~~a~~g~l~~~~gG---~~~~~~~~~p~l~~~g~~ 155 (292)
T PRK15059 81 KASLKGKTIVDM-SSISPIETKRFARQVNELGGDYLDA-PVSGGEIGAREGTLSIMVGG---DEAVFERVKPLFELLGKN 155 (292)
T ss_pred ccCCCCCEEEEC-CCCCHHHHHHHHHHHHHcCCCEEEe-cCCCCHHHHhcCcEEEEEcC---CHHHHHHHHHHHHHHcCC
Confidence 456678888854 445544 3434332 23345543 43322 223454 555555 78899999999999996
Q ss_pred cEEcCCC
Q psy6714 270 CEEVPEY 276 (303)
Q Consensus 270 ~v~vdE~ 276 (303)
.+++.+.
T Consensus 156 ~~~~G~~ 162 (292)
T PRK15059 156 ITLVGGN 162 (292)
T ss_pred cEEeCCc
Confidence 5677653
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.8e-10 Score=105.81 Aligned_cols=110 Identities=14% Similarity=0.173 Sum_probs=82.2
Q ss_pred CeEecChHHhhcCCCEEEEeeCCcc-H-HHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVKPHI-V-PVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQ 241 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVpP~~-v-~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~ 241 (303)
++.+.+..+++++||+||+||+.+. + ..++.++.+.++++++|++.++.+++..+.+.+..-.+++..++-.|... .
T Consensus 69 i~~~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~-~ 147 (288)
T PRK09260 69 LSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHK-M 147 (288)
T ss_pred eEEeCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCccc-C
Confidence 4456777788999999999998554 3 35667787778888888788888999988887753234566665545432 2
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEcC
Q psy6714 242 GASVFVRGSSASDQDAQTVINLFKSVGTC-EEVP 274 (303)
Q Consensus 242 G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~vd 274 (303)
....++.++..+++.++.++.+|+.+|+. +.+.
T Consensus 148 ~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~ 181 (288)
T PRK09260 148 KLVELIRGLETSDETVQVAKEVAEQMGKETVVVN 181 (288)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEec
Confidence 35567788888999999999999999974 5554
|
|
| >KOG0409|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=109.35 Aligned_cols=139 Identities=17% Similarity=0.234 Sum_probs=92.0
Q ss_pred CCCcEEEEcCChhhHHHHHHH---------HhhcHH---HHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHHHh--
Q psy6714 131 NRSDKQIAGTTERGPGALIAS---------LNIVSK---ATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVALND-- 195 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~a---------l~r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL~e-- 195 (303)
.+++|||||||+||.+|.... ++++.+ .+.+.|..+..++.|++++||+||.+|+ |.++++++..
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~ 113 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKS 113 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCC
Confidence 378899999999999764433 244444 4667899999999999999999999997 8899999854
Q ss_pred -hccccCCCCEE-EEecCCCcH---HHHHhhCC-CCCceEEEecCcHH--hhhCCc-EEEEeCCCCCHHHHHHHHHHHHh
Q psy6714 196 -IKPVFNESNLL-ISVAGGVPI---KNMEQALP-KNSRIIRAMPNTPA--LVRQGA-SVFVRGSSASDQDAQTVINLFKS 266 (303)
Q Consensus 196 -I~~~L~~g~IV-VSiaaGV~i---e~L~~~l~-~~~~VVr~mPn~p~--~v~~G~-til~~g~~~~~e~~e~V~~Lfs~ 266 (303)
+...+++++.. | ++.-++. .+|.+.+. .++.++.+ |-... ...+|. ++++.+ +++.+++...+|+.
T Consensus 114 Gvl~g~~~g~~~~v-DmSTidp~~s~ei~~~i~~~~~~~vDA-PVSGg~~~A~~G~LtimagG---de~~~~~~~~~~~~ 188 (327)
T KOG0409|consen 114 GVLSGIRPGKKATV-DMSTIDPDTSLEIAKAISNKGGRFVDA-PVSGGVKGAEEGTLTIMAGG---DEALFEAASPVFKL 188 (327)
T ss_pred cceeeccCCCceEE-eccccCHHHHHHHHHHHHhCCCeEEec-cccCCchhhhcCeEEEEecC---cHHHHHHHHHHHHH
Confidence 23334455544 4 3334443 45555443 23344433 11111 112343 455554 88999999999999
Q ss_pred cCC-cEEcC
Q psy6714 267 VGT-CEEVP 274 (303)
Q Consensus 267 iG~-~v~vd 274 (303)
+|+ .+++-
T Consensus 189 mGk~~~~~G 197 (327)
T KOG0409|consen 189 MGKNVVFLG 197 (327)
T ss_pred hcceEEEec
Confidence 996 45554
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.6e-10 Score=104.51 Aligned_cols=141 Identities=12% Similarity=0.173 Sum_probs=90.8
Q ss_pred CCcEEEEcCChhhHHHHHHH---------HhhcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHHH---h
Q psy6714 132 RSDKQIAGTTERGPGALIAS---------LNIVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVALN---D 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a---------l~r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL~---e 195 (303)
|+||+|||+|.||.++.... ++++.+ .+.+.|+....++.+++++||+||+|||+. +++.++. .
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~ 80 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENG 80 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCccc
Confidence 46899999999999543322 123333 344668877788889999999999999987 4888874 3
Q ss_pred hccccCCCCEEEEecCCCcH--HHHHhhCC-CCCceEEE-ecCcHHhhhCCcE-EEEeCCCCCHHHHHHHHHHHHhcCC-
Q psy6714 196 IKPVFNESNLLISVAGGVPI--KNMEQALP-KNSRIIRA-MPNTPALVRQGAS-VFVRGSSASDQDAQTVINLFKSVGT- 269 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~i--e~L~~~l~-~~~~VVr~-mPn~p~~v~~G~t-il~~g~~~~~e~~e~V~~Lfs~iG~- 269 (303)
+.+.++++++||.+..+... ..+.+.+. .+..++.+ +...+.....|.. +++.+ +++.++.++.+|+.+|.
T Consensus 81 i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg---~~~~~~~~~p~l~~~g~~ 157 (296)
T PRK15461 81 VCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGG---TAEQVERATPILMAMGNE 157 (296)
T ss_pred HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECC---CHHHHHHHHHHHHHHcCC
Confidence 55557788888866544332 34444442 12233322 1111222334544 55544 78899999999999996
Q ss_pred cEEcCC
Q psy6714 270 CEEVPE 275 (303)
Q Consensus 270 ~v~vdE 275 (303)
.+++.+
T Consensus 158 ~~~~g~ 163 (296)
T PRK15461 158 LINAGG 163 (296)
T ss_pred eEeeCC
Confidence 455654
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.7e-10 Score=105.10 Aligned_cols=138 Identities=18% Similarity=0.201 Sum_probs=89.2
Q ss_pred CCCcEEEEcCChhhHHHHHHHH----------hhcHH---HHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH---
Q psy6714 131 NRSDKQIAGTTERGPGALIASL----------NIVSK---ATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL--- 193 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL--- 193 (303)
++|||||||+|.||.+ ++..+ ++..+ .+.+.|+....+..+++++||+||+||| +.+++.++
T Consensus 1 ~~~~IgviG~G~mG~~-~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~ 79 (296)
T PRK11559 1 MTMKVGFIGLGIMGKP-MSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGE 79 (296)
T ss_pred CCceEEEEccCHHHHH-HHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCc
Confidence 3679999999999994 44432 22222 3456788777788889999999999998 55677776
Q ss_pred HhhccccCCCCEEEEecCCCcH---HHHHhhCCC-CCceEEEecC---cHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHh
Q psy6714 194 NDIKPVFNESNLLISVAGGVPI---KNMEQALPK-NSRIIRAMPN---TPALVRQGASVFVRGSSASDQDAQTVINLFKS 266 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaGV~i---e~L~~~l~~-~~~VVr~mPn---~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~ 266 (303)
.++.+.++++++||.+. .++. ..+.+.+.. +..++.. |. .+.......++++.+ +++.++.+..+|+.
T Consensus 80 ~~~~~~~~~g~iiid~s-t~~~~~~~~l~~~~~~~g~~~~d~-pv~g~~~~a~~g~l~i~~gg---~~~~~~~~~~~l~~ 154 (296)
T PRK11559 80 NGIIEGAKPGTVVIDMS-SIAPLASREIAAALKAKGIEMLDA-PVSGGEPKAIDGTLSVMVGG---DKAIFDKYYDLMKA 154 (296)
T ss_pred chHhhcCCCCcEEEECC-CCCHHHHHHHHHHHHHcCCcEEEc-CCCCCHHHHhhCcEEEEECC---CHHHHHHHHHHHHH
Confidence 44666777889888543 3443 345555432 2223222 21 122222224555554 67889999999999
Q ss_pred cCCc-EEcC
Q psy6714 267 VGTC-EEVP 274 (303)
Q Consensus 267 iG~~-v~vd 274 (303)
+|.. +.+.
T Consensus 155 ~~~~~~~~g 163 (296)
T PRK11559 155 MAGSVVHTG 163 (296)
T ss_pred hcCCeEEeC
Confidence 9974 5454
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.5e-10 Score=113.49 Aligned_cols=136 Identities=15% Similarity=0.151 Sum_probs=90.7
Q ss_pred CCCcEEEEcCChhhHHHHHHH---------HhhcHHH---Hhh----CCCe---EecChHHhhcC---CCEEEEeeC-Cc
Q psy6714 131 NRSDKQIAGTTERGPGALIAS---------LNIVSKA---TGT----MGAK---ITFDNKEVTLN---SEVIILAVK-PH 187 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~a---------l~r~~e~---l~e----~Gv~---v~~d~~eav~~---ADIVILAVp-P~ 187 (303)
.+++|||||||.||.+|.... +|++.++ +.+ .|.. ...++.++++. +|+||+||+ +.
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~ 84 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGA 84 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcH
Confidence 467899999999999653332 2444433 322 2543 56788888875 999999997 77
Q ss_pred cHHHHHHhhccccCCCCEEEEecCCCc--HHHHHhhCC-CCCceEEE-ecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHH
Q psy6714 188 IVPVALNDIKPVFNESNLLISVAGGVP--IKNMEQALP-KNSRIIRA-MPNTPALVRQGASVFVRGSSASDQDAQTVINL 263 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVVSiaaGV~--ie~L~~~l~-~~~~VVr~-mPn~p~~v~~G~til~~g~~~~~e~~e~V~~L 263 (303)
.+++|+.++.+.+.+|++||.+..... ...+.+.+. .+..++.+ +-..+.....|.++++.| +++..+.++.+
T Consensus 85 aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG---~~~a~~~v~pv 161 (493)
T PLN02350 85 PVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGG---SFEAYKNIEDI 161 (493)
T ss_pred HHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecC---CHHHHHHHHHH
Confidence 788999889888889999996644332 234444442 22333322 112222334566666665 78899999999
Q ss_pred HHhcCC
Q psy6714 264 FKSVGT 269 (303)
Q Consensus 264 fs~iG~ 269 (303)
|+.+|.
T Consensus 162 L~~ia~ 167 (493)
T PLN02350 162 LEKVAA 167 (493)
T ss_pred HHHHhh
Confidence 999994
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.2e-10 Score=105.91 Aligned_cols=143 Identities=15% Similarity=0.172 Sum_probs=95.0
Q ss_pred CcEEEEcCChhhHHHHHHHHh----------hcHH---HHhh--------------CCCeEecChHHhh-cCCCEEEEee
Q psy6714 133 SDKQIAGTTERGPGALIASLN----------IVSK---ATGT--------------MGAKITFDNKEVT-LNSEVIILAV 184 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e--------------~Gv~v~~d~~eav-~~ADIVILAV 184 (303)
|||+|||.|.||+ .|+..+. +..+ .+.+ .++....+..+++ .++|+||+||
T Consensus 1 MkI~IiGaGa~G~-ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiav 79 (326)
T PRK14620 1 MKISILGAGSFGT-AIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAV 79 (326)
T ss_pred CEEEEECcCHHHH-HHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEe
Confidence 6899999999999 4664421 1122 1211 0223445666665 5899999999
Q ss_pred CCccHHHHHHhhcc-ccCCCCEEEEecCCCcH-------HHHHhhCCCCCceEEEecCcHHhhhCCc-EEEEeCCCCCHH
Q psy6714 185 KPHIVPVALNDIKP-VFNESNLLISVAGGVPI-------KNMEQALPKNSRIIRAMPNTPALVRQGA-SVFVRGSSASDQ 255 (303)
Q Consensus 185 pP~~v~~VL~eI~~-~L~~g~IVVSiaaGV~i-------e~L~~~l~~~~~VVr~mPn~p~~v~~G~-til~~g~~~~~e 255 (303)
|++++.++++++.+ ++.+++.||++++|+.. +.+.+.++...-.+...|+.+.++..+. +.+... ..+.+
T Consensus 80 ks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~-~~~~~ 158 (326)
T PRK14620 80 PTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLA-GQNET 158 (326)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEe-cCCHH
Confidence 99999999999998 88778888999999965 5677777742222344577665555442 223332 22455
Q ss_pred HHHHHHHHHHhcCCcEEcCCCC
Q psy6714 256 DAQTVINLFKSVGTCEEVPEYL 277 (303)
Q Consensus 256 ~~e~V~~Lfs~iG~~v~vdE~~ 277 (303)
..+.+.++|+.-+..++++++.
T Consensus 159 ~~~~l~~~l~~~~~~~~~~~Di 180 (326)
T PRK14620 159 LGSSLISKLSNENLKIIYSQDI 180 (326)
T ss_pred HHHHHHHHHCCCCeEEEecCcc
Confidence 5677778887777777776554
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-09 Score=102.41 Aligned_cols=159 Identities=14% Similarity=0.177 Sum_probs=103.9
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh-----------cHHHHhhCCCeEe-------------cChHHhhcCCCEEEEeeCC
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI-----------VSKATGTMGAKIT-------------FDNKEVTLNSEVIILAVKP 186 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r-----------~~e~l~e~Gv~v~-------------~d~~eav~~ADIVILAVpP 186 (303)
++|||+|||+|.||+ .|+..+.+ ..+.+.+.|+... .+..+.+..+|+||||||.
T Consensus 4 ~~m~I~IiG~GaiG~-~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~ 82 (313)
T PRK06249 4 ETPRIGIIGTGAIGG-FYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKT 82 (313)
T ss_pred cCcEEEEECCCHHHH-HHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecC
Confidence 368999999999999 66654321 1223334444321 1223346789999999999
Q ss_pred ccHHHHHHhhccccCCCCEEEEecCCCcH-HHHHhhCCCCCceEEEecCcH------Hhhh---CCcEEEEeCCCCC---
Q psy6714 187 HIVPVALNDIKPVFNESNLLISVAGGVPI-KNMEQALPKNSRIIRAMPNTP------ALVR---QGASVFVRGSSAS--- 253 (303)
Q Consensus 187 ~~v~~VL~eI~~~L~~g~IVVSiaaGV~i-e~L~~~l~~~~~VVr~mPn~p------~~v~---~G~til~~g~~~~--- 253 (303)
.++.++++.+.+.+.++.+||++.+|+.. +.+.+.++. .+++.....+. ..+. .|.+.+-.....+
T Consensus 83 ~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~-~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~ 161 (313)
T PRK06249 83 TANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPA-EHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGPAADD 161 (313)
T ss_pred CChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCCCcccc
Confidence 99999999999988888899999999986 568888875 35554432222 1111 2222222112212
Q ss_pred --HHHHHHHHHHHHhcCCcEEcCCCC-------------chhhhhhccchHHH
Q psy6714 254 --DQDAQTVINLFKSVGTCEEVPEYL-------------LDGITGLSGSGPAY 291 (303)
Q Consensus 254 --~e~~e~V~~Lfs~iG~~v~vdE~~-------------~Da~tAlsGsgPAf 291 (303)
.+..+.+.++|+..|..+.++++. ++.++|+.+|.-+.
T Consensus 162 ~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~ 214 (313)
T PRK06249 162 GITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDP 214 (313)
T ss_pred hHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHH
Confidence 456677889999999877666543 56678887775443
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-09 Score=104.47 Aligned_cols=137 Identities=14% Similarity=0.154 Sum_probs=89.7
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh----------hc--HHHHhhCCCeE----------------ecChHHhhcCCCEEEE
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN----------IV--SKATGTMGAKI----------------TFDNKEVTLNSEVIIL 182 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~----------r~--~e~l~e~Gv~v----------------~~d~~eav~~ADIVIL 182 (303)
+||||+|||+|.||+ .++..+. +. .+.+.+.|+.+ ..+..+.+.++|+||+
T Consensus 1 ~~mkI~IiG~G~mG~-~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil 79 (341)
T PRK08229 1 MMARICVLGAGSIGC-YLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLV 79 (341)
T ss_pred CCceEEEECCCHHHH-HHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEE
Confidence 478999999999999 4554321 11 12334445432 1222356789999999
Q ss_pred eeCCccHHHHHHhhccccCCCCEEEEecCCCcH-HHHHhhCCCCCceEEE-ec--------CcHHhhhCCcEEEEeCCCC
Q psy6714 183 AVKPHIVPVALNDIKPVFNESNLLISVAGGVPI-KNMEQALPKNSRIIRA-MP--------NTPALVRQGASVFVRGSSA 252 (303)
Q Consensus 183 AVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~i-e~L~~~l~~~~~VVr~-mP--------n~p~~v~~G~til~~g~~~ 252 (303)
|||+.++.++++++.+.+.++++||++.+|+.. +.+++.++. ..++.. ++ ........|. +..+.
T Consensus 80 ~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~-~~~~~g~~~~~~~~~~pg~~~~~~~g~--l~~~~-- 154 (341)
T PRK08229 80 TVKSAATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPG-ATVLAGMVPFNVISRGPGAFHQGTSGA--LAIEA-- 154 (341)
T ss_pred EecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCC-CcEEEEEEEEEEEecCCceEEecCCCc--eEecC--
Confidence 999999999999999888888999999999974 678888774 333332 11 1111111222 22222
Q ss_pred CHHHHHHHHHHHHhcCCcEEcC
Q psy6714 253 SDQDAQTVINLFKSVGTCEEVP 274 (303)
Q Consensus 253 ~~e~~e~V~~Lfs~iG~~v~vd 274 (303)
.+..+.+.++|+..|..+++.
T Consensus 155 -~~~~~~~~~~l~~~g~~~~~~ 175 (341)
T PRK08229 155 -SPALRPFAAAFARAGLPLVTH 175 (341)
T ss_pred -CchHHHHHHHHHhcCCCceec
Confidence 244688999999999765554
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-10 Score=97.82 Aligned_cols=114 Identities=21% Similarity=0.298 Sum_probs=78.3
Q ss_pred cEEEEcCChhhHHHHHHHHh----------hcHH---HHhh--------------CCCeEecChHHhhcCCCEEEEeeCC
Q psy6714 134 DKQIAGTTERGPGALIASLN----------IVSK---ATGT--------------MGAKITFDNKEVTLNSEVIILAVKP 186 (303)
Q Consensus 134 kIgIIGlG~MG~~~La~al~----------r~~e---~l~e--------------~Gv~v~~d~~eav~~ADIVILAVpP 186 (303)
||+|||.|+||.+ ++..+. +..+ .+.+ ..+.++.|.+++++++|+||++||.
T Consensus 1 KI~ViGaG~~G~A-lA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTA-LAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS 79 (157)
T ss_dssp EEEEESSSHHHHH-HHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G
T ss_pred CEEEECcCHHHHH-HHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH
Confidence 7999999999994 554321 1111 1111 1345678888999999999999999
Q ss_pred ccHHHHHHhhccccCCCCEEEEecCCCcH-------HHHHhhCCCCCceEEEecCcHHhhhCCc-EEEEe
Q psy6714 187 HIVPVALNDIKPVFNESNLLISVAGGVPI-------KNMEQALPKNSRIIRAMPNTPALVRQGA-SVFVR 248 (303)
Q Consensus 187 ~~v~~VL~eI~~~L~~g~IVVSiaaGV~i-------e~L~~~l~~~~~VVr~mPn~p~~v~~G~-til~~ 248 (303)
+.++++++++.++++++++||++.+|+.. +.+++.++...-++-..|+++.++..+. +.++.
T Consensus 80 ~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~pt~~~~ 149 (157)
T PF01210_consen 80 QAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGKPTAVVI 149 (157)
T ss_dssp GGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT--EEEEE
T ss_pred HHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcCCCeEEEE
Confidence 99999999999999999999999999842 5677777753345566799999998874 34443
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.5e-10 Score=107.70 Aligned_cols=113 Identities=14% Similarity=0.092 Sum_probs=83.9
Q ss_pred CeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCCCcHH---------HHHhhCCCCCceEEEecC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIK---------NMEQALPKNSRIIRAMPN 234 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie---------~L~~~l~~~~~VVr~mPn 234 (303)
++.+.|.+++++++|+||++||++.++++++++.++++++++|||++.|++.+ .+++.++. ...+-..||
T Consensus 70 i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~-~~~~lsGP~ 148 (342)
T TIGR03376 70 LVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI-PCGVLSGAN 148 (342)
T ss_pred eEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC-CeEEeeCcc
Confidence 34567888999999999999999999999999999998889999999999865 34555632 234567799
Q ss_pred cHHhhhCCcE-EEEe-CCCCC--HHHHHHHHHHHHhcCCcEEcCCCC
Q psy6714 235 TPALVRQGAS-VFVR-GSSAS--DQDAQTVINLFKSVGTCEEVPEYL 277 (303)
Q Consensus 235 ~p~~v~~G~t-il~~-g~~~~--~e~~e~V~~Lfs~iG~~v~vdE~~ 277 (303)
++.++..|.. .++. +.+.+ .+..+.++++|+.=-..++.+.+.
T Consensus 149 ~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv 195 (342)
T TIGR03376 149 LANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDV 195 (342)
T ss_pred hHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCc
Confidence 9999988752 2222 22111 778899999998644445555443
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-09 Score=101.09 Aligned_cols=142 Identities=20% Similarity=0.277 Sum_probs=92.4
Q ss_pred CcEEEEcCChhhHHHHHHHHhhc---------H---HHHhhCCCeE-------------ecChHHhhcCCCEEEEeeCCc
Q psy6714 133 SDKQIAGTTERGPGALIASLNIV---------S---KATGTMGAKI-------------TFDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~r~---------~---e~l~e~Gv~v-------------~~d~~eav~~ADIVILAVpP~ 187 (303)
|||+|||+|.||. .++..+.+. . +.+.+.|+.+ ..+..++++.+|+||+|||..
T Consensus 1 mkI~IiG~G~iG~-~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGG-TFGGRLLEAGRDVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred CeEEEECCCHHHH-HHHHHHHHCCCceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 7899999999999 565443210 1 2233444432 234455568899999999999
Q ss_pred cHHHHHHhhccccCCCCEEEEecCCCc-HHHHHhhCCCCCceEEEecCcHHh------hh-CCcEEEEeCC--CCCHHHH
Q psy6714 188 IVPVALNDIKPVFNESNLLISVAGGVP-IKNMEQALPKNSRIIRAMPNTPAL------VR-QGASVFVRGS--SASDQDA 257 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVVSiaaGV~-ie~L~~~l~~~~~VVr~mPn~p~~------v~-~G~til~~g~--~~~~e~~ 257 (303)
+++++++++.+.+.++++||++.+|+. .+.+.+.++. ..++..+...+.. +. .+...+..|. ....+..
T Consensus 80 ~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~~~~~ 158 (305)
T PRK12921 80 QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQRSERT 158 (305)
T ss_pred CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCcCHHH
Confidence 999999999988888889999999997 4668877774 2444332222211 11 1111122322 2234566
Q ss_pred HHHHHHHHhcCCcEEcCCC
Q psy6714 258 QTVINLFKSVGTCEEVPEY 276 (303)
Q Consensus 258 e~V~~Lfs~iG~~v~vdE~ 276 (303)
+.+.++|+..|..++++++
T Consensus 159 ~~l~~~l~~~g~~~~~~~d 177 (305)
T PRK12921 159 RAVRDALAGARLEVVLSEN 177 (305)
T ss_pred HHHHHHHHhCCCCceecHH
Confidence 7888999999987666544
|
|
| >KOG2380|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=105.30 Aligned_cols=165 Identities=18% Similarity=0.172 Sum_probs=117.4
Q ss_pred CCCCCcccccC-CCcEEEEcCChhhHHHHHHHHh----------h--cHHHHhhCCCeEecChHHhh-cCCCEEEEeeCC
Q psy6714 121 TTPSSREARWN-RSDKQIAGTTERGPGALIASLN----------I--VSKATGTMGAKITFDNKEVT-LNSEVIILAVKP 186 (303)
Q Consensus 121 ~~~~~~~~~~~-~mkIgIIGlG~MG~~~La~al~----------r--~~e~l~e~Gv~v~~d~~eav-~~ADIVILAVpP 186 (303)
.+.....-||. -.+|||||.|+||. .++..+- + ..+.....|..-.+++.+++ +..|+|++||..
T Consensus 40 ~~~~~s~~~~k~tl~IaIIGfGnmGq-flAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsi 118 (480)
T KOG2380|consen 40 MVSEDSIEQWKATLVIAIIGFGNMGQ-FLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI 118 (480)
T ss_pred ccCcchhhhcccceEEEEEecCcHHH-HHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehh
Confidence 34445555555 36899999999999 6665421 1 11223355665555666654 579999999999
Q ss_pred ccHHHHHHhhccc-cCCCCEEEEec--CCCcHHHHHhhCCCCCceEEEecCcHHh-hh---CCcEEEEeCCCC-----CH
Q psy6714 187 HIVPVALNDIKPV-FNESNLLISVA--GGVPIKNMEQALPKNSRIIRAMPNTPAL-VR---QGASVFVRGSSA-----SD 254 (303)
Q Consensus 187 ~~v~~VL~eI~~~-L~~g~IVVSia--aGV~ie~L~~~l~~~~~VVr~mPn~p~~-v~---~G~til~~g~~~-----~~ 254 (303)
..++.++....+. ++.+++++... .-...+.+++.||++..++..||++.-. ++ +|...++..... -+
T Consensus 119 lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ 198 (480)
T KOG2380|consen 119 LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRP 198 (480)
T ss_pred hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccch
Confidence 9999999887665 77888887443 2233466788999999999999988543 44 455554432222 37
Q ss_pred HHHHHHHHHHHhcCC-cEEcCCCCchhhhhhcc
Q psy6714 255 QDAQTVINLFKSVGT-CEEVPEYLLDGITGLSG 286 (303)
Q Consensus 255 e~~e~V~~Lfs~iG~-~v~vdE~~~Da~tAlsG 286 (303)
+..+.+.++|.+.|. .++++-++||.++|=+-
T Consensus 199 ercE~fleIf~cegckmVemS~eeHDkiaAdsQ 231 (480)
T KOG2380|consen 199 ERCEFFLEIFACEGCKMVEMSYEEHDKIAADSQ 231 (480)
T ss_pred HHHHHHHHHHHhcCCeEEEEEeecccccccchh
Confidence 889999999999995 79999889999887653
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=109.90 Aligned_cols=135 Identities=15% Similarity=0.167 Sum_probs=91.0
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHHH---Hhh----CC--CeEecChHHhhc---CCCEEEEeeC-Ccc
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSKA---TGT----MG--AKITFDNKEVTL---NSEVIILAVK-PHI 188 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e~---l~e----~G--v~v~~d~~eav~---~ADIVILAVp-P~~ 188 (303)
|++|||||+|.||.+ |+..+ +++.++ +.+ .| +..+.+++++++ ++|+||++|+ ++.
T Consensus 1 ~~~IgvIGLG~MG~~-lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~ 79 (470)
T PTZ00142 1 MSDIGLIGLAVMGQN-LALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEA 79 (470)
T ss_pred CCEEEEEeEhHHHHH-HHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHH
Confidence 468999999999995 55442 333332 222 25 346778888886 5899999986 668
Q ss_pred HHHHHHhhccccCCCCEEEEecCCCcHHHH--HhhC-CCCCceEEEe-cCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHH
Q psy6714 189 VPVALNDIKPVFNESNLLISVAGGVPIKNM--EQAL-PKNSRIIRAM-PNTPALVRQGASVFVRGSSASDQDAQTVINLF 264 (303)
Q Consensus 189 v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L--~~~l-~~~~~VVr~m-Pn~p~~v~~G~til~~g~~~~~e~~e~V~~Lf 264 (303)
+++|++++.+++.++++||...++...+.. .+.+ ..+..++.+- ..-+.....|.++++.| +++..+.++++|
T Consensus 80 v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG---~~~a~~~~~piL 156 (470)
T PTZ00142 80 VDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGG---NKEAYDHVKDIL 156 (470)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeC---CHHHHHHHHHHH
Confidence 899999999999999999988776654332 2222 2223333221 11122233566666666 788999999999
Q ss_pred HhcCCc
Q psy6714 265 KSVGTC 270 (303)
Q Consensus 265 s~iG~~ 270 (303)
+.+|..
T Consensus 157 ~~ia~~ 162 (470)
T PTZ00142 157 EKCSAK 162 (470)
T ss_pred HHHhhh
Confidence 999954
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.8e-09 Score=99.14 Aligned_cols=135 Identities=16% Similarity=0.236 Sum_probs=91.4
Q ss_pred EEcCChhhHHHHHHHH----------hhcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCC-ccHHHHH---Hhhccc
Q psy6714 137 IAGTTERGPGALIASL----------NIVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKP-HIVPVAL---NDIKPV 199 (303)
Q Consensus 137 IIGlG~MG~~~La~al----------~r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL---~eI~~~ 199 (303)
|||+|.||.+ ++..+ +++.+ .+.+.|+..+.++.++++++|+||+|||+ +++++++ +++.+.
T Consensus 1 ~IGlG~mG~~-mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~ 79 (288)
T TIGR01692 1 FIGLGNMGGP-MAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPK 79 (288)
T ss_pred CCcccHhHHH-HHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhc
Confidence 7999999995 44332 23322 34567888888899999999999999996 7788898 677777
Q ss_pred cCCCCEEEEecCCCcHHH---HHhhCC-CCCceEEEecCc--HHhhhCCc-EEEEeCCCCCHHHHHHHHHHHHhcCC-cE
Q psy6714 200 FNESNLLISVAGGVPIKN---MEQALP-KNSRIIRAMPNT--PALVRQGA-SVFVRGSSASDQDAQTVINLFKSVGT-CE 271 (303)
Q Consensus 200 L~~g~IVVSiaaGV~ie~---L~~~l~-~~~~VVr~mPn~--p~~v~~G~-til~~g~~~~~e~~e~V~~Lfs~iG~-~v 271 (303)
+.++++||++. +++.+. +.+.+. .+..++.+ |-. +.....|. ++++.+ +++.++.++.+|+.+|. .+
T Consensus 80 ~~~g~~vid~s-t~~p~~~~~~~~~~~~~g~~~vda-Pv~Gg~~~a~~g~l~~~~gg---~~~~~~~~~~~l~~~g~~~~ 154 (288)
T TIGR01692 80 VAKGSLLIDCS-TIDPDSARKLAELAAAHGAVFMDA-PVSGGVGGARAGTLTFMVGG---VAEEFAAAEPVLGPMGRNIV 154 (288)
T ss_pred CCCCCEEEECC-CCCHHHHHHHHHHHHHcCCcEEEC-CCCCCHHHHhhCcEEEEECC---CHHHHHHHHHHHHHhcCCeE
Confidence 88889888665 676643 333332 22344433 322 22223454 455555 67788999999999997 56
Q ss_pred EcCCCC
Q psy6714 272 EVPEYL 277 (303)
Q Consensus 272 ~vdE~~ 277 (303)
++.+..
T Consensus 155 ~~g~~g 160 (288)
T TIGR01692 155 HCGDHG 160 (288)
T ss_pred eeCCCC
Confidence 676643
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.5e-09 Score=98.45 Aligned_cols=136 Identities=20% Similarity=0.212 Sum_probs=88.5
Q ss_pred cEEEEcCChhhHHHHHHHH----------hhcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHH---Hhh
Q psy6714 134 DKQIAGTTERGPGALIASL----------NIVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVAL---NDI 196 (303)
Q Consensus 134 kIgIIGlG~MG~~~La~al----------~r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL---~eI 196 (303)
||||||+|.||.+ ++..+ ++..+ .+.+.|.....+..+++++||+||+|||.. .++.++ ..+
T Consensus 1 ~IgvIG~G~mG~~-iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~ 79 (291)
T TIGR01505 1 KVGFIGLGIMGSP-MSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGI 79 (291)
T ss_pred CEEEEEecHHHHH-HHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchH
Confidence 5999999999995 44332 23333 345667777778888999999999999864 666676 335
Q ss_pred ccccCCCCEEEEecCCCcH---HHHHhhCCC-CCceEEEecCcH--HhhhCCc-EEEEeCCCCCHHHHHHHHHHHHhcCC
Q psy6714 197 KPVFNESNLLISVAGGVPI---KNMEQALPK-NSRIIRAMPNTP--ALVRQGA-SVFVRGSSASDQDAQTVINLFKSVGT 269 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV~i---e~L~~~l~~-~~~VVr~mPn~p--~~v~~G~-til~~g~~~~~e~~e~V~~Lfs~iG~ 269 (303)
...++++++||++. .++. ..+.+.+.. +..++. .|-.. .....|. .+++.+ +++.++.++++|+.+|.
T Consensus 80 ~~~~~~g~iivd~s-t~~~~~~~~l~~~l~~~g~~~~~-~pv~g~~~~a~~g~l~i~~gg---~~~~~~~~~~ll~~lg~ 154 (291)
T TIGR01505 80 IEGAKPGKTLVDMS-SISPIESKRFAKAVKEKGIDYLD-APVSGGEIGAIEGTLSIMVGG---DQAVFDRVKPLFEALGK 154 (291)
T ss_pred hhcCCCCCEEEECC-CCCHHHHHHHHHHHHHcCCCEEe-cCCCCCHHHHhcCCEEEEecC---CHHHHHHHHHHHHHhcC
Confidence 55667888888654 3333 345555532 234444 24321 1122343 455554 67889999999999997
Q ss_pred -cEEcCC
Q psy6714 270 -CEEVPE 275 (303)
Q Consensus 270 -~v~vdE 275 (303)
.+++.+
T Consensus 155 ~~~~~g~ 161 (291)
T TIGR01505 155 NIVLVGG 161 (291)
T ss_pred CeEEeCC
Confidence 456654
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.6e-09 Score=115.96 Aligned_cols=135 Identities=8% Similarity=0.114 Sum_probs=91.8
Q ss_pred CcEEEEcCChhhHHHHHHH---------HhhcHH---HHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH---Hhh
Q psy6714 133 SDKQIAGTTERGPGALIAS---------LNIVSK---ATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL---NDI 196 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~a---------l~r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL---~eI 196 (303)
+||||||+|.||.+|.... ++++.+ .+.+.|+..+.++.+++++||+||+||+ +.++++|+ ..+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~ 84 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGA 84 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhH
Confidence 5699999999999754433 234433 4567799888999999999999999997 67788887 456
Q ss_pred ccccCCCCEEEEecCCCcH---HHHHhhCCC-C--CceEEE-ecCcHHhhhCC-cEEEEeCCCCCHHHHHHHHHHHHhcC
Q psy6714 197 KPVFNESNLLISVAGGVPI---KNMEQALPK-N--SRIIRA-MPNTPALVRQG-ASVFVRGSSASDQDAQTVINLFKSVG 268 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV~i---e~L~~~l~~-~--~~VVr~-mPn~p~~v~~G-~til~~g~~~~~e~~e~V~~Lfs~iG 268 (303)
.+.+.++++||.+ +-++. ..+.+.+.. + ..++.+ +-..+.....| .++++.| +++.++.++.+|+.+|
T Consensus 85 ~~~l~~g~iivd~-STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG---~~~~~~~~~p~l~~~g 160 (1378)
T PLN02858 85 AKGLQKGAVILIR-STILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASG---RSDAITRAQPFLSAMC 160 (1378)
T ss_pred HhcCCCcCEEEEC-CCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcC---CHHHHHHHHHHHHHhc
Confidence 6667788888844 33443 345444432 2 122322 11222233345 4566666 7888999999999999
Q ss_pred CcE
Q psy6714 269 TCE 271 (303)
Q Consensus 269 ~~v 271 (303)
..+
T Consensus 161 ~~i 163 (1378)
T PLN02858 161 QKL 163 (1378)
T ss_pred Cce
Confidence 754
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-08 Score=113.15 Aligned_cols=137 Identities=12% Similarity=0.151 Sum_probs=92.2
Q ss_pred CCcEEEEcCChhhHHHHHHHH---------hhcHH---HHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHHH---h
Q psy6714 132 RSDKQIAGTTERGPGALIASL---------NIVSK---ATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVALN---D 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al---------~r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL~---e 195 (303)
+++|||||+|.||.+|....+ ++..+ .+.+.|.....++.+++++||+||+||| |+++++|+. .
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 578999999999997544332 23333 3456788777889999999999999998 888999983 4
Q ss_pred hccccCCCCEEEEecCCCcH---HHHHhhCCC---CCceEEE-ecCcHHhhhCC-cEEEEeCCCCCHHHHHHHHHHHHhc
Q psy6714 196 IKPVFNESNLLISVAGGVPI---KNMEQALPK---NSRIIRA-MPNTPALVRQG-ASVFVRGSSASDQDAQTVINLFKSV 267 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~i---e~L~~~l~~---~~~VVr~-mPn~p~~v~~G-~til~~g~~~~~e~~e~V~~Lfs~i 267 (303)
+.+.+.++++||.+ +.++. ..+.+.+.. +..++.+ +-..+.....| .++++.| +++.++.++.+|+.+
T Consensus 404 ~~~~l~~g~ivVd~-STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG---~~~~~~~~~plL~~l 479 (1378)
T PLN02858 404 AVSALPAGASIVLS-STVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASG---TDEALKSAGSVLSAL 479 (1378)
T ss_pred HHhcCCCCCEEEEC-CCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEEC---CHHHHHHHHHHHHHH
Confidence 55667788888844 33443 344444421 2233322 11223333445 4667776 678899999999999
Q ss_pred CCcEE
Q psy6714 268 GTCEE 272 (303)
Q Consensus 268 G~~v~ 272 (303)
|..++
T Consensus 480 g~~i~ 484 (1378)
T PLN02858 480 SEKLY 484 (1378)
T ss_pred hCcEE
Confidence 97543
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3e-08 Score=94.68 Aligned_cols=142 Identities=20% Similarity=0.285 Sum_probs=96.1
Q ss_pred CcEEEEcCChhhHHHHHHHHhh------------cHHHHhhCCCeEe------------cChHHhhcCCCEEEEeeCCcc
Q psy6714 133 SDKQIAGTTERGPGALIASLNI------------VSKATGTMGAKIT------------FDNKEVTLNSEVIILAVKPHI 188 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~r------------~~e~l~e~Gv~v~------------~d~~eav~~ADIVILAVpP~~ 188 (303)
|||+|+|+|.||+ .++..+.+ ..+++++.|+.+. .+..+....+|+||++||..+
T Consensus 1 mkI~IlGaGAvG~-l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q 79 (307)
T COG1893 1 MKILILGAGAIGS-LLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQ 79 (307)
T ss_pred CeEEEECCcHHHH-HHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecccc
Confidence 7999999999999 55543211 1245555565432 222345568999999999999
Q ss_pred HHHHHHhhccccCCCCEEEEecCCCcHHH-HHhhCCCCCceEEEecCcHHh---------hhCCcEEEEeCCCCCHHHHH
Q psy6714 189 VPVALNDIKPVFNESNLLISVAGGVPIKN-MEQALPKNSRIIRAMPNTPAL---------VRQGASVFVRGSSASDQDAQ 258 (303)
Q Consensus 189 v~~VL~eI~~~L~~g~IVVSiaaGV~ie~-L~~~l~~~~~VVr~mPn~p~~---------v~~G~til~~g~~~~~e~~e 258 (303)
+.++++.+.+++++++.|+++.+|+...+ +.+.++.. .++..+-.+.+. .+.|.+.+-......++..+
T Consensus 80 ~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~-~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~~~~~ 158 (307)
T COG1893 80 LEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKE-TVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRDELVK 158 (307)
T ss_pred HHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcc-eEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCchHHHH
Confidence 99999999999999999999999998754 77777753 344433222221 11122222222232446788
Q ss_pred HHHHHHHhcCCcEEcCCC
Q psy6714 259 TVINLFKSVGTCEEVPEY 276 (303)
Q Consensus 259 ~V~~Lfs~iG~~v~vdE~ 276 (303)
.+.++|+..|..+.++++
T Consensus 159 ~i~~~~~~a~~~~~~~~d 176 (307)
T COG1893 159 ALAELFKEAGLEVELHPD 176 (307)
T ss_pred HHHHHHHhCCCCeEEcHH
Confidence 899999999988777654
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.7e-08 Score=98.64 Aligned_cols=141 Identities=13% Similarity=0.150 Sum_probs=97.8
Q ss_pred CCcEEEEcCChhhHHHHHHHH---------hhcHH--------------HHhhCC-------------CeEecChHHhhc
Q psy6714 132 RSDKQIAGTTERGPGALIASL---------NIVSK--------------ATGTMG-------------AKITFDNKEVTL 175 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al---------~r~~e--------------~l~e~G-------------v~v~~d~~eav~ 175 (303)
..+|||||+|.||.++..... ++..+ ++.+.| ++.+.+..+ +.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~ 85 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LA 85 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hC
Confidence 357999999999996433221 11111 123445 466667655 56
Q ss_pred CCCEEEEeeC-CccHHHHH-HhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCC
Q psy6714 176 NSEVIILAVK-PHIVPVAL-NDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSAS 253 (303)
Q Consensus 176 ~ADIVILAVp-P~~v~~VL-~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~ 253 (303)
+||+||.||+ ...++..+ .++....+++++|.|.++.+++..|...+....+++.+|.--|..+. ..+.++.+...+
T Consensus 86 ~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~-~LvEvv~g~~Ts 164 (507)
T PRK08268 86 DCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLM-KLVEVVSGLATD 164 (507)
T ss_pred CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccC-eeEEEeCCCCCC
Confidence 9999999997 56666554 56766677888887888999999888877533356666544433332 356667777889
Q ss_pred HHHHHHHHHHHHhcCCc-EEcC
Q psy6714 254 DQDAQTVINLFKSVGTC-EEVP 274 (303)
Q Consensus 254 ~e~~e~V~~Lfs~iG~~-v~vd 274 (303)
++.++.+..+++.+|+. +.+.
T Consensus 165 ~~~~~~~~~l~~~lgk~pv~v~ 186 (507)
T PRK08268 165 PAVADALYALARAWGKTPVRAK 186 (507)
T ss_pred HHHHHHHHHHHHHcCCceEEec
Confidence 99999999999999974 5554
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-08 Score=102.05 Aligned_cols=133 Identities=17% Similarity=0.212 Sum_probs=86.9
Q ss_pred cEEEEcCChhhHHHHHHHH----------hhcHH---HHhhC-----CCeEecChHHhh---cCCCEEEEeeCC-ccHHH
Q psy6714 134 DKQIAGTTERGPGALIASL----------NIVSK---ATGTM-----GAKITFDNKEVT---LNSEVIILAVKP-HIVPV 191 (303)
Q Consensus 134 kIgIIGlG~MG~~~La~al----------~r~~e---~l~e~-----Gv~v~~d~~eav---~~ADIVILAVpP-~~v~~ 191 (303)
+|||||+|.||.+ |+..+ +++.+ .+.+. ++....+..+++ +++|+||+|||+ ..+.+
T Consensus 1 ~IG~IGLG~MG~~-mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~ 79 (467)
T TIGR00873 1 DIGVIGLAVMGSN-LALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDA 79 (467)
T ss_pred CEEEEeeHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHH
Confidence 4999999999995 55432 23333 23333 255666777766 468999999987 78999
Q ss_pred HHHhhccccCCCCEEEEecCCCcHH--HHHhhC-CCCCceEEEec-CcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhc
Q psy6714 192 ALNDIKPVFNESNLLISVAGGVPIK--NMEQAL-PKNSRIIRAMP-NTPALVRQGASVFVRGSSASDQDAQTVINLFKSV 267 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSiaaGV~ie--~L~~~l-~~~~~VVr~mP-n~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~i 267 (303)
|+.++.+++.++++||...+....+ ...+.+ ..+..++.+-. ..+.....|.++++.| +++..+.++++|+.+
T Consensus 80 Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG---~~~a~~~~~p~L~~i 156 (467)
T TIGR00873 80 VINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGG---SAEAWPLVAPIFQKI 156 (467)
T ss_pred HHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCC---CHHHHHHHHHHHHHH
Confidence 9999999998999999776544333 222223 22333333321 1122233566555555 788999999999999
Q ss_pred CCc
Q psy6714 268 GTC 270 (303)
Q Consensus 268 G~~ 270 (303)
|..
T Consensus 157 a~~ 159 (467)
T TIGR00873 157 AAK 159 (467)
T ss_pred hhh
Confidence 964
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.6e-08 Score=93.57 Aligned_cols=155 Identities=15% Similarity=0.154 Sum_probs=98.1
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh----------hcHHH---Hhh-CCCeEec-----------ChHHhhcCCCEEEEeeC
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN----------IVSKA---TGT-MGAKITF-----------DNKEVTLNSEVIILAVK 185 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~----------r~~e~---l~e-~Gv~v~~-----------d~~eav~~ADIVILAVp 185 (303)
+.|||+|||+|.||+ .++..+. +..++ +.+ .|+.+.. ...+....+|+||+|||
T Consensus 1 ~~m~I~IiGaGaiG~-~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK 79 (305)
T PRK05708 1 MSMTWHILGAGSLGS-LWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACK 79 (305)
T ss_pred CCceEEEECCCHHHH-HHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECC
Confidence 358999999999999 5554432 11122 322 3454321 11122357899999999
Q ss_pred CccHHHHHHhhccccCCCCEEEEecCCCcH-HHHHhhCCCCCceEEEecCcHHh------hh-CCcEEEEeCCCCCHHHH
Q psy6714 186 PHIVPVALNDIKPVFNESNLLISVAGGVPI-KNMEQALPKNSRIIRAMPNTPAL------VR-QGASVFVRGSSASDQDA 257 (303)
Q Consensus 186 P~~v~~VL~eI~~~L~~g~IVVSiaaGV~i-e~L~~~l~~~~~VVr~mPn~p~~------v~-~G~til~~g~~~~~e~~ 257 (303)
..++.++++++.+++.++++||++.+|+.. +.+.+.++. .+++.....+.+. +. .+...+.+|.. +.+..
T Consensus 80 ~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~-~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~-~~~~~ 157 (305)
T PRK05708 80 AYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPH-ARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDP-RNPTA 157 (305)
T ss_pred HHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCC-CcEEEEEeeeceecCCCCEEEEeceEEEEEcCC-CCcch
Confidence 999999999999999999999999999986 567888874 3455443333221 11 12212233422 22345
Q ss_pred HHHHHHHHhcCCcEEcCCCC-------------chhhhhhccch
Q psy6714 258 QTVINLFKSVGTCEEVPEYL-------------LDGITGLSGSG 288 (303)
Q Consensus 258 e~V~~Lfs~iG~~v~vdE~~-------------~Da~tAlsGsg 288 (303)
+.+.++|...|..+.++++. ++.++|+..+-
T Consensus 158 ~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~ 201 (305)
T PRK05708 158 PAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCR 201 (305)
T ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCC
Confidence 67888899888776665432 55666665543
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.5e-08 Score=96.99 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=97.2
Q ss_pred CCcEEEEcCChhhHHHHHHHH---------hhcHH--------------HHhhCC-------------CeEecChHHhhc
Q psy6714 132 RSDKQIAGTTERGPGALIASL---------NIVSK--------------ATGTMG-------------AKITFDNKEVTL 175 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al---------~r~~e--------------~l~e~G-------------v~v~~d~~eav~ 175 (303)
-.||+|||+|.||.++..... ++..+ .+.+.| ++.+.+..+ +.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~ 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence 467999999999996433221 11111 122334 345667654 56
Q ss_pred CCCEEEEeeC-CccHHHH-HHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCC
Q psy6714 176 NSEVIILAVK-PHIVPVA-LNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSAS 253 (303)
Q Consensus 176 ~ADIVILAVp-P~~v~~V-L~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~ 253 (303)
+||+||.||+ ...++.. +.++....+++++|.|-++++++..|.+.+....+++.+|.--|..+. ...-++.+...+
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~-~LvEvv~g~~Ts 162 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVM-ALVEVVSGLATA 162 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccC-ceEEEeCCCCCC
Confidence 9999999997 4555544 566777777888888888899998888877533456666644333222 456677888889
Q ss_pred HHHHHHHHHHHHhcCCc-EEcC
Q psy6714 254 DQDAQTVINLFKSVGTC-EEVP 274 (303)
Q Consensus 254 ~e~~e~V~~Lfs~iG~~-v~vd 274 (303)
++.++.+..+++.+|+. +.+.
T Consensus 163 ~e~~~~~~~l~~~lgk~pv~v~ 184 (503)
T TIGR02279 163 AEVAEQLYETALAWGKQPVHCH 184 (503)
T ss_pred HHHHHHHHHHHHHcCCeeeEeC
Confidence 99999999999999985 5553
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-07 Score=90.65 Aligned_cols=141 Identities=11% Similarity=0.164 Sum_probs=98.7
Q ss_pred CCcEEEEcCChhhHHHHHHHH---------hhcH--------------HHHhhCC---------CeEecChHHhhcCCCE
Q psy6714 132 RSDKQIAGTTERGPGALIASL---------NIVS--------------KATGTMG---------AKITFDNKEVTLNSEV 179 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al---------~r~~--------------e~l~e~G---------v~v~~d~~eav~~ADI 179 (303)
..||+|||+|.||.++..... +... +.+.+.| +..+.+.++++++||+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 457999999999996433221 1111 1111222 2455677788999999
Q ss_pred EEEeeC-CccHH-HHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHH
Q psy6714 180 IILAVK-PHIVP-VALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDA 257 (303)
Q Consensus 180 VILAVp-P~~v~-~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~ 257 (303)
||-||+ ...++ +++.++..+.+++++|-|-.+++.+..+.+.+..-.+++.+|+--|...- ...=++++...+++..
T Consensus 87 ViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~-pLVEVv~g~~T~~e~~ 165 (321)
T PRK07066 87 IQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLL-PLVEVLGGERTAPEAV 165 (321)
T ss_pred EEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccC-ceEEEeCCCCCCHHHH
Confidence 999997 44455 45577877788888777777899999999887643578888875553221 1233467788899999
Q ss_pred HHHHHHHHhcCC-cEEc
Q psy6714 258 QTVINLFKSVGT-CEEV 273 (303)
Q Consensus 258 e~V~~Lfs~iG~-~v~v 273 (303)
+.+.+++..+|+ ++.+
T Consensus 166 ~~~~~f~~~lGk~pV~v 182 (321)
T PRK07066 166 DAAMGIYRALGMRPLHV 182 (321)
T ss_pred HHHHHHHHHcCCEeEec
Confidence 999999999996 5566
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-07 Score=89.35 Aligned_cols=107 Identities=17% Similarity=0.173 Sum_probs=78.1
Q ss_pred EecChHHhhcCCCEEEEeeC-CccHH-HHHHhhcccc-CCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCC
Q psy6714 166 ITFDNKEVTLNSEVIILAVK-PHIVP-VALNDIKPVF-NESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQG 242 (303)
Q Consensus 166 v~~d~~eav~~ADIVILAVp-P~~v~-~VL~eI~~~L-~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G 242 (303)
.+.+. +.+++||+||-||+ ...++ +++..+.... +++++|+|...++.+..+...+....+++.+|.-.|..+...
T Consensus 75 ~~~~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~l 153 (286)
T PRK07819 75 FTTDL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPL 153 (286)
T ss_pred eeCCH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCce
Confidence 55666 56899999999997 44455 4446666666 789999999999999999887654346777776655444444
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHH-hcCCc-EEcC
Q psy6714 243 ASVFVRGSSASDQDAQTVINLFK-SVGTC-EEVP 274 (303)
Q Consensus 243 ~til~~g~~~~~e~~e~V~~Lfs-~iG~~-v~vd 274 (303)
+ =++.+...+++.++.+..++. .+|+. +.+.
T Consensus 154 v-Elv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~ 186 (286)
T PRK07819 154 V-ELVPTLVTSEATVARAEEFASDVLGKQVVRAQ 186 (286)
T ss_pred E-EEeCCCCCCHHHHHHHHHHHHHhCCCCceEec
Confidence 3 345667889999999999988 59975 4453
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.3e-08 Score=94.56 Aligned_cols=134 Identities=19% Similarity=0.266 Sum_probs=82.7
Q ss_pred CcEEEEcCChhhHHHHHHHH----------hhcHHHH---h-------------------hCC-CeEecChHHhhcCCCE
Q psy6714 133 SDKQIAGTTERGPGALIASL----------NIVSKAT---G-------------------TMG-AKITFDNKEVTLNSEV 179 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al----------~r~~e~l---~-------------------e~G-v~v~~d~~eav~~ADI 179 (303)
|||+|||+|.||.+ ++..+ ++..++. . +.| +..+.+..+++++||+
T Consensus 1 mkI~vIGlG~~G~~-lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~adv 79 (411)
T TIGR03026 1 MKIAVIGLGYVGLP-LAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADV 79 (411)
T ss_pred CEEEEECCCchhHH-HHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCE
Confidence 68999999999995 44332 1122211 1 124 5566777888999999
Q ss_pred EEEeeC-Cc---------cHHHHHHhhccccCCCCEEEEecCCCc---HHHH-HhhCCC------CC-ceEEEecCcHHh
Q psy6714 180 IILAVK-PH---------IVPVALNDIKPVFNESNLLISVAGGVP---IKNM-EQALPK------NS-RIIRAMPNTPAL 238 (303)
Q Consensus 180 VILAVp-P~---------~v~~VL~eI~~~L~~g~IVVSiaaGV~---ie~L-~~~l~~------~~-~VVr~mPn~p~~ 238 (303)
||+||| |. .+.++++++.++++++++||.. +++. ...+ ...+.. .. ..+...|...
T Consensus 80 vii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~-STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~-- 156 (411)
T TIGR03026 80 IIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLE-STVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFL-- 156 (411)
T ss_pred EEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEe-CcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcC--
Confidence 999998 43 3788888888888888888843 2332 2233 222211 01 1234444332
Q ss_pred hhCCc---------EEEEeCCCCCHHHHHHHHHHHHhcC--CcEEcC
Q psy6714 239 VRQGA---------SVFVRGSSASDQDAQTVINLFKSVG--TCEEVP 274 (303)
Q Consensus 239 v~~G~---------til~~g~~~~~e~~e~V~~Lfs~iG--~~v~vd 274 (303)
..|. .++.. .+++..+.++++|+.++ .++.+.
T Consensus 157 -~~G~~~~~~~~~~~iv~G---~~~~~~~~~~~l~~~~~~~~~~~~~ 199 (411)
T TIGR03026 157 -REGNAVHDLLNPDRIVGG---ETEEAGEAVAELYAPIIEDGPVLVT 199 (411)
T ss_pred -CCCChhhhhcCCCEEEEe---CCHHHHHHHHHHHHHhccCCCEEcC
Confidence 2222 34444 27889999999999997 355554
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-07 Score=91.32 Aligned_cols=128 Identities=18% Similarity=0.205 Sum_probs=90.1
Q ss_pred HhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCC-------CCCceEE
Q psy6714 159 TGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALP-------KNSRIIR 230 (303)
Q Consensus 159 l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~-------~~~~VVr 230 (303)
+.+.|+.++.+..++++++|+||+||| +.++.+|+..+.+.+.+|++||.+ +-++.+.+...|. .+..|..
T Consensus 64 LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~-STIsP~t~~~~~e~~l~~~r~d~~v~s 142 (341)
T TIGR01724 64 VEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNT-CTVSPVVLYYSLEKILRLKRTDVGISS 142 (341)
T ss_pred HHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEEC-CCCCHHHHHHHHHHHhhcCccccCeec
Confidence 567799988899999999999999998 556889988888888899988844 5566665555432 2345566
Q ss_pred EecC-cHHhhhCCcEEEEeC-----CCCCHHHHHHHHHHHHhcCC-cEEcCCCCchhhhhhccc
Q psy6714 231 AMPN-TPALVRQGASVFVRG-----SSASDQDAQTVINLFKSVGT-CEEVPEYLLDGITGLSGS 287 (303)
Q Consensus 231 ~mPn-~p~~v~~G~til~~g-----~~~~~e~~e~V~~Lfs~iG~-~v~vdE~~~Da~tAlsGs 287 (303)
+||. +|..-+++..++... .-.++++++.+.+|.+++|+ .+.++.+....+..+++.
T Consensus 143 ~HP~~vP~~~~~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~~v~Dm~s~ 206 (341)
T TIGR01724 143 MHPAAVPGTPQHGHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPADVTSAVADMGSL 206 (341)
T ss_pred cCCCCCCCCCCCceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHHH
Confidence 6654 244445554443321 24478999999999999997 566776665555544443
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.2e-08 Score=101.34 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=94.3
Q ss_pred EEEeeCCccHHHHHHhhccccCCCCEEEEecCCCcHHHHHh---hCCCC-CceEEEecCcHHhh-----------hCCcE
Q psy6714 180 IILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQ---ALPKN-SRIIRAMPNTPALV-----------RQGAS 244 (303)
Q Consensus 180 VILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~---~l~~~-~~VVr~mPn~p~~v-----------~~G~t 244 (303)
||||||+..+.++++++.+++++++ +|+++++++...++. .++.. ..+|..||+...+. ....+
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~-~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~ 79 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDAST-IVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNV 79 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCc-EEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeE
Confidence 7999999999999999999997775 577889999765444 55431 34677777654332 22356
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcCC-cEEcCCCCchhhhhhccchHHHHHHHHHhh
Q psy6714 245 VFVRGSSASDQDAQTVINLFKSVGT-CEEVPEYLLDGITGLSGSGPAYRYEVTSNE 299 (303)
Q Consensus 245 il~~g~~~~~e~~e~V~~Lfs~iG~-~v~vdE~~~Da~tAlsGsgPAf~~~~ie~~ 299 (303)
++|+.+..+++..++++++++.+|. +++++.++||.++|++|+.|-++...+-..
T Consensus 80 il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l~~~ 135 (673)
T PRK11861 80 VLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFALVEQ 135 (673)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8888888889999999999999996 577899999999999999999988776443
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.7e-07 Score=80.67 Aligned_cols=109 Identities=19% Similarity=0.264 Sum_probs=74.6
Q ss_pred CCeEecChHHhhcCCCEEEEeeCC-ccH-HHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhh
Q psy6714 163 GAKITFDNKEVTLNSEVIILAVKP-HIV-PVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVR 240 (303)
Q Consensus 163 Gv~v~~d~~eav~~ADIVILAVpP-~~v-~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~ 240 (303)
.+....+..+++ +||+||=|++- -.+ .+++.+|...+.++++|.|-..++++..|...+....+++.+|+-.|....
T Consensus 66 ~i~~~~dl~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~ 144 (180)
T PF02737_consen 66 RISFTTDLEEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLM 144 (180)
T ss_dssp TEEEESSGGGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT-
T ss_pred hcccccCHHHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccC
Confidence 345677888877 99999999962 222 377888888888999999999999999999988654578888866554221
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEc
Q psy6714 241 QGASVFVRGSSASDQDAQTVINLFKSVGTC-EEV 273 (303)
Q Consensus 241 ~G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~v 273 (303)
...=++.+...+++.++.+..++..+|+. +.+
T Consensus 145 -~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v 177 (180)
T PF02737_consen 145 -PLVEVVPGPKTSPETVDRVRALLRSLGKTPVVV 177 (180)
T ss_dssp --EEEEEE-TTS-HHHHHHHHHHHHHTT-EEEEE
T ss_pred -ceEEEeCCCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 22334677888999999999999999985 444
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.9e-07 Score=78.62 Aligned_cols=100 Identities=21% Similarity=0.285 Sum_probs=72.4
Q ss_pred EEEEcCChhhHHHHHHHHhh------------cHHHHhhCCCeEecC--------------hHHhhcCCCEEEEeeCCcc
Q psy6714 135 KQIAGTTERGPGALIASLNI------------VSKATGTMGAKITFD--------------NKEVTLNSEVIILAVKPHI 188 (303)
Q Consensus 135 IgIIGlG~MG~~~La~al~r------------~~e~l~e~Gv~v~~d--------------~~eav~~ADIVILAVpP~~ 188 (303)
|+|+|.|.||. .++-.+.+ ..+.+++.|+.+... ..+..+.+|+||+|||..+
T Consensus 1 I~I~G~GaiG~-~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGS-LYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ 79 (151)
T ss_dssp EEEESTSHHHH-HHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG
T ss_pred CEEECcCHHHH-HHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc
Confidence 78999999999 56654421 123344555543221 1235678999999999999
Q ss_pred HHHHHHhhccccCCCCEEEEecCCCcH-HHHHhhCCCCCceEEEecCcH
Q psy6714 189 VPVALNDIKPVFNESNLLISVAGGVPI-KNMEQALPKNSRIIRAMPNTP 236 (303)
Q Consensus 189 v~~VL~eI~~~L~~g~IVVSiaaGV~i-e~L~~~l~~~~~VVr~mPn~p 236 (303)
++++++.+++++.+++.||++.+|+.. +.+.+.++. ..++..+....
T Consensus 80 ~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~-~~v~~g~~~~g 127 (151)
T PF02558_consen 80 LEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPR-PRVLGGVTTIG 127 (151)
T ss_dssp HHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTG-SGEEEEEEEEE
T ss_pred hHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCC-CcEEEEEEeEe
Confidence 999999999999888899999999985 567778864 46766665543
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.9e-07 Score=91.21 Aligned_cols=95 Identities=18% Similarity=0.194 Sum_probs=56.9
Q ss_pred hcCCCEEEEeeCC----------ccHHHHHHhhccccCCCCEEE--EecCCCcHHHHHhhCCC---C--C--------c-
Q psy6714 174 TLNSEVIILAVKP----------HIVPVALNDIKPVFNESNLLI--SVAGGVPIKNMEQALPK---N--S--------R- 227 (303)
Q Consensus 174 v~~ADIVILAVpP----------~~v~~VL~eI~~~L~~g~IVV--SiaaGV~ie~L~~~l~~---~--~--------~- 227 (303)
+++||+||+|||. ..+.+++++|.++++++++|| |++..-+.+.+...+.. . . .
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f 152 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADI 152 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCe
Confidence 3479999999985 578888888988898999887 34333334444332211 0 0 0
Q ss_pred eEEEec-----CcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCc
Q psy6714 228 IIRAMP-----NTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTC 270 (303)
Q Consensus 228 VVr~mP-----n~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~ 270 (303)
.+.+-| .....-......++.+. +++..+.++++|+.++..
T Consensus 153 ~v~~~PE~~~~G~~~~~~~~~~~vvgG~--~~~~~~~~~~ly~~~~~~ 198 (415)
T PRK11064 153 NIAYCPERVLPGQVMVELIKNDRVIGGM--TPVCSARASELYKIFLEG 198 (415)
T ss_pred EEEECCCccCCCChhhhhcCCCEEEEeC--CHHHHHHHHHHHHHhcCC
Confidence 112223 11111111223445542 678899999999999853
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.6e-07 Score=90.95 Aligned_cols=135 Identities=13% Similarity=0.096 Sum_probs=75.3
Q ss_pred CCcEEEEcCChhhHHHHHHH--------HhhcHHH---Hh---------------hCCCeEecChHHhhcCCCEEEEeeC
Q psy6714 132 RSDKQIAGTTERGPGALIAS--------LNIVSKA---TG---------------TMGAKITFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a--------l~r~~e~---l~---------------e~Gv~v~~d~~eav~~ADIVILAVp 185 (303)
.|||||||+|.||.+|.... ++.+.++ +. +.|....++..+++++||+||+||+
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp 85 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP 85 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence 58999999999999754432 1122222 21 1122233455567899999999997
Q ss_pred -C------c---cHHHHHHhhccccCCCCEEE--EecCCCcHH-HHHhhCCC--C-----CceEEEecCc-----HHhhh
Q psy6714 186 -P------H---IVPVALNDIKPVFNESNLLI--SVAGGVPIK-NMEQALPK--N-----SRIIRAMPNT-----PALVR 240 (303)
Q Consensus 186 -P------~---~v~~VL~eI~~~L~~g~IVV--SiaaGV~ie-~L~~~l~~--~-----~~VVr~mPn~-----p~~v~ 240 (303)
| . .+....+.|.++++++++|| |++..-+.+ .++..+.. + ...+.+-|-. ...--
T Consensus 86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~ 165 (425)
T PRK15182 86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRL 165 (425)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccc
Confidence 5 2 34444567888888888888 444433333 23332221 1 1223322221 11101
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHhcC
Q psy6714 241 QGASVFVRGSSASDQDAQTVINLFKSVG 268 (303)
Q Consensus 241 ~G~til~~g~~~~~e~~e~V~~Lfs~iG 268 (303)
.....++.|. +++..+.+..+++.+.
T Consensus 166 ~~~~riv~G~--~~~~~~~~~~ly~~~~ 191 (425)
T PRK15182 166 TNIKKITSGS--TAQIAELIDEVYQQII 191 (425)
T ss_pred cCCCeEEECC--CHHHHHHHHHHHHHHh
Confidence 1223345553 5677788999999885
|
|
| >KOG2711|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.3e-07 Score=85.97 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=83.9
Q ss_pred CeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCCCcH-----------HHHHhhCCCCCceEEEe
Q psy6714 164 AKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPI-----------KNMEQALPKNSRIIRAM 232 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~i-----------e~L~~~l~~~~~VVr~m 232 (303)
+.+.+|..+++++|||+|+.||.+.+..++++|..+++++...||+..|+.. +.|.+.++-.+ -+-+.
T Consensus 93 vvAv~dl~ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~-~vL~G 171 (372)
T KOG2711|consen 93 VVAVPDLVEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPC-SVLMG 171 (372)
T ss_pred eEecchHHHHhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCc-eeecC
Confidence 4556788999999999999999999999999999999999999999999984 24555665322 26667
Q ss_pred cCcHHhhhCCc---EEEEeCCCCCHHHHHHHHHHHHhcCCcEEcC--CCCchhhhhh
Q psy6714 233 PNTPALVRQGA---SVFVRGSSASDQDAQTVINLFKSVGTCEEVP--EYLLDGITGL 284 (303)
Q Consensus 233 Pn~p~~v~~G~---til~~g~~~~~e~~e~V~~Lfs~iG~~v~vd--E~~~Da~tAl 284 (303)
||++.++.+.. +.+... .+.+.-..+.+||+.--..+++- -+-+.++-||
T Consensus 172 aNiA~EVa~~~f~e~tIg~~--~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaL 226 (372)
T KOG2711|consen 172 ANIASEVANEKFCETTIGYK--DKKEAGILLKKLFRTPYFRVVVVEDADGVEICGAL 226 (372)
T ss_pred CchHHHHHhccccceeEecc--chhhcchHHHHHhCCCceEEEEeccchHhHHhhhH
Confidence 99999887553 222222 13333346888998877655442 3344444444
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1e-06 Score=85.05 Aligned_cols=168 Identities=15% Similarity=0.185 Sum_probs=112.4
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------hcH---HHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHH-Hh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------IVS---KATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVAL-ND 195 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r~~---e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL-~e 195 (303)
+..++|||||+|.||.+ ++..+. +.. +.+.+.|+.+ .+..++++.||+|++++|...-.+++ .+
T Consensus 14 LkgKtVGIIG~GsIG~a-mA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaak~ADVV~llLPd~~t~~V~~~e 91 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHA-QAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAVRTAQVVQMLLPDEQQAHVYKAE 91 (335)
T ss_pred hCcCEEEEEeEcHHHHH-HHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHHhcCCEEEEeCCChHHHHHHHHH
Confidence 45688999999999995 443321 111 2334568865 48899999999999999966667887 46
Q ss_pred hccccCCCCEEEEecCCCcHHHHHhhC-CCCCceEEEecCcHHh-------hhCCcEEEE-eCCCCCHHHHHHHHHHHHh
Q psy6714 196 IKPVFNESNLLISVAGGVPIKNMEQAL-PKNSRIIRAMPNTPAL-------VRQGASVFV-RGSSASDQDAQTVINLFKS 266 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~ie~L~~~l-~~~~~VVr~mPn~p~~-------v~~G~til~-~g~~~~~e~~e~V~~Lfs~ 266 (303)
+.+.++++.++ ..+-|..+. ..... |++..|+-+-|--|.. -+.|++.++ .-.+.+..+.+........
T Consensus 92 il~~MK~GaiL-~f~hgfni~-~~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala~a~~ 169 (335)
T PRK13403 92 VEENLREGQML-LFSHGFNIH-FGQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALAYAKG 169 (335)
T ss_pred HHhcCCCCCEE-EECCCccee-cCceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHHHHHH
Confidence 88888888855 488888773 33333 4566777776655531 235665433 3345566788999999999
Q ss_pred cCCc----EEc---CC---CCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 267 VGTC----EEV---PE---YLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 267 iG~~----v~v---dE---~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
+|.. ++- +| +.|..=+.|+|...+.+-.=+|-|+.
T Consensus 170 iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lve 214 (335)
T PRK13403 170 VGCTRAGVIETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTE 214 (335)
T ss_pred cCCCceeEEecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 9953 222 23 44555567788777777666666553
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.46 E-value=6e-07 Score=78.64 Aligned_cols=135 Identities=19% Similarity=0.306 Sum_probs=86.5
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh--------------cHHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHH-Hh
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI--------------VSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVAL-ND 195 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r--------------~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL-~e 195 (303)
..++|+|||.|..|. .-++.++. ..+++++.|+.+ .+..|+++++|+|++.+|+....++. ++
T Consensus 3 ~~k~IAViGyGsQG~-a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v-~~~~eAv~~aDvV~~L~PD~~q~~vy~~~ 80 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGH-AHALNLRDSGVNVIVGLREGSASWEKAKADGFEV-MSVAEAVKKADVVMLLLPDEVQPEVYEEE 80 (165)
T ss_dssp CTSEEEEES-SHHHH-HHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-EC-CEHHHHHHC-SEEEE-S-HHHHHHHHHHH
T ss_pred CCCEEEEECCChHHH-HHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCee-ccHHHHHhhCCEEEEeCChHHHHHHHHHH
Confidence 467899999999998 34443321 234667889986 57788999999999999999999998 78
Q ss_pred hccccCCCCEEEEecCCCcHHHHHhhC-CCCCceEEEecCcHHh-----h--hCCcEEEE-eCCCCCHHHHHHHHHHHHh
Q psy6714 196 IKPVFNESNLLISVAGGVPIKNMEQAL-PKNSRIIRAMPNTPAL-----V--RQGASVFV-RGSSASDQDAQTVINLFKS 266 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~ie~L~~~l-~~~~~VVr~mPn~p~~-----v--~~G~til~-~g~~~~~e~~e~V~~Lfs~ 266 (303)
|.+.|+++++++ ..-|..+- ..... +++..++-+.|-.|.. + +.|+..++ ...+.+....+........
T Consensus 81 I~p~l~~G~~L~-fahGfni~-~~~i~pp~~vdV~mvAPKgpG~~vR~~y~~G~Gvp~l~AV~qD~sg~A~~~ala~A~~ 158 (165)
T PF07991_consen 81 IAPNLKPGATLV-FAHGFNIH-YGLIKPPKDVDVIMVAPKGPGHLVRREYVEGRGVPALIAVHQDASGKAKELALAYAKA 158 (165)
T ss_dssp HHHHS-TT-EEE-ESSSHHHH-CTTS---TTSEEEEEEESSSCHHHHHHHHCCTS--EEEEEEE-SSS-HHHHHHHHHHH
T ss_pred HHhhCCCCCEEE-eCCcchhh-cCcccCCCCCeEEEEecCCCChHHHHHHHcCCCceEEEEEEECCCchHHHHHHHHHHH
Confidence 999999998654 77777663 22222 3456777777776642 2 35665433 3345566778888888888
Q ss_pred cCC
Q psy6714 267 VGT 269 (303)
Q Consensus 267 iG~ 269 (303)
+|.
T Consensus 159 iG~ 161 (165)
T PF07991_consen 159 IGG 161 (165)
T ss_dssp TTH
T ss_pred hCC
Confidence 773
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.1e-06 Score=81.88 Aligned_cols=127 Identities=17% Similarity=0.235 Sum_probs=75.3
Q ss_pred CcEEEEcCChhhHHHHHHHH---------hhcHHHH---h----------------hCCCeE--ecChHHhhcCCCEEEE
Q psy6714 133 SDKQIAGTTERGPGALIASL---------NIVSKAT---G----------------TMGAKI--TFDNKEVTLNSEVIIL 182 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al---------~r~~e~l---~----------------e~Gv~v--~~d~~eav~~ADIVIL 182 (303)
|||+|||+|.||.++. ..+ +.+.+++ . +.+... +.+..+++.+||+||+
T Consensus 1 mkI~VIGlGyvGl~~A-~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNG-LLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHH-HHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 6899999999998643 221 1122211 1 123333 3446678899999999
Q ss_pred eeC-C----------ccHHHHHHhhccccCCCCEEE--EecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCc------
Q psy6714 183 AVK-P----------HIVPVALNDIKPVFNESNLLI--SVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGA------ 243 (303)
Q Consensus 183 AVp-P----------~~v~~VL~eI~~~L~~g~IVV--SiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~------ 243 (303)
||| | ..+++++++|.. ++++++|| |++..-+.+.+.+.+.. ..+.+- |.-...|.
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~--~~v~~~---PE~l~~G~a~~d~~ 153 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRT--ENIIFS---PEFLREGKALYDNL 153 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhc--CcEEEC---cccccCCccccccc
Confidence 998 4 367788888876 57888877 55555555666665432 123333 32233332
Q ss_pred ---EEEEeCCCCCHHHHHHHHHHHHh--cCC
Q psy6714 244 ---SVFVRGSSASDQDAQTVINLFKS--VGT 269 (303)
Q Consensus 244 ---til~~g~~~~~e~~e~V~~Lfs~--iG~ 269 (303)
.++.++ +++..+.+.++|.. ++.
T Consensus 154 ~p~rvv~G~---~~~~~~~~~~~l~~~~~~~ 181 (388)
T PRK15057 154 HPSRIVIGE---RSERAERFAALLQEGAIKQ 181 (388)
T ss_pred CCCEEEEEc---CcHHHHHHHHHHHhhhhcC
Confidence 344444 34556777777754 554
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.6e-05 Score=82.21 Aligned_cols=109 Identities=18% Similarity=0.175 Sum_probs=81.8
Q ss_pred CeEecChHHhhcCCCEEEEeeCCc-cH-HHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVKPH-IV-PVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQ 241 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVpP~-~v-~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~ 241 (303)
++.+++. +.+++||+||=||+-+ .+ .+++.++..++++++|+.|-.+++++..|.+.+....+++.+|+-.|...-.
T Consensus 373 i~~~~~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~ 451 (699)
T TIGR02440 373 ITGTTDY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMP 451 (699)
T ss_pred eEEeCCh-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCc
Confidence 3455555 5678999999999733 23 3778888888889999999999999999998876435788888665543222
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEcC
Q psy6714 242 GASVFVRGSSASDQDAQTVINLFKSVGTC-EEVP 274 (303)
Q Consensus 242 G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~vd 274 (303)
..=++.+...+++.++.+..++..+|+. +.+.
T Consensus 452 -lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~ 484 (699)
T TIGR02440 452 -LVEVIPHAGTSEQTIATTVALAKKQGKTPIVVA 484 (699)
T ss_pred -eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 2224567788999999999999999984 5553
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.1e-05 Score=73.16 Aligned_cols=132 Identities=14% Similarity=0.269 Sum_probs=91.1
Q ss_pred CcEEEEcCChhhHHHHHHH-Hh---------hcH---HHHhhCCCeEecChHHhh---cCCCEEEEeeCCc-cHHHHHHh
Q psy6714 133 SDKQIAGTTERGPGALIAS-LN---------IVS---KATGTMGAKITFDNKEVT---LNSEVIILAVKPH-IVPVALND 195 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~a-l~---------r~~---e~l~e~Gv~v~~d~~eav---~~ADIVILAVpP~-~v~~VL~e 195 (303)
|+||.||||.||.. +.+. ++ .+. +.++..|++...+..+.+ ...-+|-|.||.- .+..++++
T Consensus 1 M~iGmiGLGrMG~n-~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~ 79 (300)
T COG1023 1 MQIGMIGLGRMGAN-LVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDD 79 (300)
T ss_pred CcceeeccchhhHH-HHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHH
Confidence 78999999999994 5443 22 222 356677877767766654 3578999999966 78899999
Q ss_pred hccccCCCCEEEEecCCCcHHHHHh---hCCCCCceEEEecCcHHh-hhCCcEEEEeCCCCCHHHHHHHHHHHHhcC
Q psy6714 196 IKPVFNESNLLISVAGGVPIKNMEQ---ALPKNSRIIRAMPNTPAL-VRQGASVFVRGSSASDQDAQTVINLFKSVG 268 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~ie~L~~---~l~~~~~VVr~mPn~p~~-v~~G~til~~g~~~~~e~~e~V~~Lfs~iG 268 (303)
+.+.|.++.+||.-=+.---+.+++ +...+..++.+..+-.+. ...|..+++.+ +++..+.++.+|..+-
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG---~~~a~~~~~pif~~lA 153 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGG---DEEAVERLEPIFKALA 153 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecC---cHHHHHHHHHHHHhhC
Confidence 9999999999885433222233333 333455666665443322 23577777777 7899999999999874
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.3e-05 Score=82.87 Aligned_cols=108 Identities=20% Similarity=0.226 Sum_probs=80.9
Q ss_pred CeEecChHHhhcCCCEEEEeeC-CccH-HHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVK-PHIV-PVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQ 241 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVp-P~~v-~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~ 241 (303)
++.+.+. +.+++||+||=||+ .-.+ .+++.++..++++++||.|-.+++++..|.+.+....+++.+|.-.|...-.
T Consensus 381 i~~~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~ 459 (715)
T PRK11730 381 IRPTLDY-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMP 459 (715)
T ss_pred eEEeCCH-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccc
Confidence 3445555 55789999999996 3333 3777888888889999989999999999999886434788888655543222
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEc
Q psy6714 242 GASVFVRGSSASDQDAQTVINLFKSVGTC-EEV 273 (303)
Q Consensus 242 G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~v 273 (303)
..=++.+...+++.++.+..++..+|+. +.+
T Consensus 460 -lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v 491 (715)
T PRK11730 460 -LVEVIRGEKTSDETIATVVAYASKMGKTPIVV 491 (715)
T ss_pred -eEEeeCCCCCCHHHHHHHHHHHHHhCCceEEe
Confidence 2224567788999999999999999984 545
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.1e-05 Score=83.47 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=81.2
Q ss_pred CeEecChHHhhcCCCEEEEeeC-CccHH-HHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVK-PHIVP-VALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQ 241 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVp-P~~v~-~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~ 241 (303)
++.+.+. +.+++||+||=||+ .-.++ +++.++..++++++|+.|-.+++++..|.+.+..-.+++.+|.-.|...-.
T Consensus 403 i~~~~~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~ 481 (737)
T TIGR02441 403 LTPTLDY-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQ 481 (737)
T ss_pred eEEeCCH-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCc
Confidence 3445555 46789999999996 33343 777888888889999999999999999999876434788888665543322
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEc
Q psy6714 242 GASVFVRGSSASDQDAQTVINLFKSVGTC-EEV 273 (303)
Q Consensus 242 G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~v 273 (303)
..=++.+...+++.++.+..++..+|+. +.+
T Consensus 482 -LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v 513 (737)
T TIGR02441 482 -LLEIITHDGTSKDTLASAVAVGLKQGKVVIVV 513 (737)
T ss_pred -eEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 2224567788999999999999999985 444
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.9e-05 Score=82.00 Aligned_cols=108 Identities=17% Similarity=0.151 Sum_probs=81.6
Q ss_pred CeEecChHHhhcCCCEEEEeeCC-ccH-HHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVKP-HIV-PVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQ 241 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVpP-~~v-~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~ 241 (303)
++.+++. +.+++||+||=||+- -.+ .+++.++..++++++|+.|-.+++++..|.+.+....+++.+|.-.|...-.
T Consensus 378 i~~~~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~ 456 (708)
T PRK11154 378 ISGTTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMP 456 (708)
T ss_pred EEEeCCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCc
Confidence 3445555 567899999999962 223 4778888888889999999999999999998876434788888665543222
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEc
Q psy6714 242 GASVFVRGSSASDQDAQTVINLFKSVGTC-EEV 273 (303)
Q Consensus 242 G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~v 273 (303)
..=++.++..+++..+.+..++..+|+. +.+
T Consensus 457 -lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v 488 (708)
T PRK11154 457 -LVEVIPHAKTSAETIATTVALAKKQGKTPIVV 488 (708)
T ss_pred -eEEEECCCCCCHHHHHHHHHHHHHcCCceEEE
Confidence 2224577888999999999999999984 555
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.3e-05 Score=81.68 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=81.0
Q ss_pred CeEecChHHhhcCCCEEEEeeC-CccH-HHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVK-PHIV-PVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQ 241 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVp-P~~v-~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~ 241 (303)
++.+.+. +.+++||+||=||+ .-.+ .+++.++..++++++|+-|-.+++++..|...+..-.+++.+|.-.|...-.
T Consensus 381 i~~~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~ 459 (714)
T TIGR02437 381 ITPTLSY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMP 459 (714)
T ss_pred eEEeCCH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCc
Confidence 3445555 45789999999996 3333 3778888888889999999999999999998776434788888665543221
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEc
Q psy6714 242 GASVFVRGSSASDQDAQTVINLFKSVGTC-EEV 273 (303)
Q Consensus 242 G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~v 273 (303)
..=++.+...+++.++.+..++..+|+. +.+
T Consensus 460 -lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v 491 (714)
T TIGR02437 460 -LVEVIRGEKSSDETIATVVAYASKMGKTPIVV 491 (714)
T ss_pred -eEeecCCCCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 2224567788999999999999999985 544
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.1e-06 Score=74.49 Aligned_cols=45 Identities=27% Similarity=0.496 Sum_probs=32.9
Q ss_pred CCeEecChHHhhcCCCEEEEeeC-Cc---------cHHHHHHhhccccCCCCEEE
Q psy6714 163 GAKITFDNKEVTLNSEVIILAVK-PH---------IVPVALNDIKPVFNESNLLI 207 (303)
Q Consensus 163 Gv~v~~d~~eav~~ADIVILAVp-P~---------~v~~VL~eI~~~L~~g~IVV 207 (303)
.+..+.+..+++.++|++|+||| |. .+.+++++|.++++++++||
T Consensus 63 ~l~~t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV 117 (185)
T PF03721_consen 63 RLRATTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV 117 (185)
T ss_dssp SEEEESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE
T ss_pred cchhhhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE
Confidence 35677788888999999999997 32 27788889999898888877
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.2e-05 Score=81.17 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=42.0
Q ss_pred CeEecChHHhhcCCCEEEEeeC-Cc--------------cHHHHHHhhccccCCCCEEE--EecCCCcHHHHHhh
Q psy6714 164 AKITFDNKEVTLNSEVIILAVK-PH--------------IVPVALNDIKPVFNESNLLI--SVAGGVPIKNMEQA 221 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVp-P~--------------~v~~VL~eI~~~L~~g~IVV--SiaaGV~ie~L~~~ 221 (303)
+..+++..+++++||++||||+ |. .+.+++++|.++++++++|| |++-+-+.+.+...
T Consensus 66 l~~t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~ 140 (473)
T PLN02353 66 LFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKI 140 (473)
T ss_pred EEEEcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHH
Confidence 4556677778999999999995 43 57788899999998898888 44433334444443
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.7e-05 Score=71.61 Aligned_cols=98 Identities=18% Similarity=0.304 Sum_probs=74.1
Q ss_pred hhcCCCEEEEeeC-CccHH-HHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCC
Q psy6714 173 VTLNSEVIILAVK-PHIVP-VALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGS 250 (303)
Q Consensus 173 av~~ADIVILAVp-P~~v~-~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~ 250 (303)
.+++||+||=+|+ ...++ +++.++-.+.+++.|+=|-.+++++..|.+.+..-.+++.+|+--|..+-. ..=++.+.
T Consensus 79 ~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~-LVEvI~g~ 157 (307)
T COG1250 79 ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMP-LVEVIRGE 157 (307)
T ss_pred HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcce-eEEEecCC
Confidence 6889999999996 44444 677888878888888888889999999998875334688887544432211 12235677
Q ss_pred CCCHHHHHHHHHHHHhcCCcE
Q psy6714 251 SASDQDAQTVINLFKSVGTCE 271 (303)
Q Consensus 251 ~~~~e~~e~V~~Lfs~iG~~v 271 (303)
..+++.++.+.++...+|+..
T Consensus 158 ~T~~e~~~~~~~~~~~igK~~ 178 (307)
T COG1250 158 KTSDETVERVVEFAKKIGKTP 178 (307)
T ss_pred CCCHHHHHHHHHHHHHcCCCC
Confidence 888999999999999999863
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.3e-06 Score=78.33 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=61.9
Q ss_pred ccCCCcEEEEcCChhhHHHHHHHH-hh----------cHHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHH--Hh
Q psy6714 129 RWNRSDKQIAGTTERGPGALIASL-NI----------VSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVAL--ND 195 (303)
Q Consensus 129 ~~~~mkIgIIGlG~MG~~~La~al-~r----------~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL--~e 195 (303)
.+..|+|||||+|.||. .++..+ +. ........++....+..+++++||+|++++|.......+ .+
T Consensus 143 ~l~g~~VgIIG~G~IG~-~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~ 221 (332)
T PRK08605 143 SIKDLKVAVIGTGRIGL-AVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNAD 221 (332)
T ss_pred eeCCCEEEEECCCHHHH-HHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHH
Confidence 35678999999999999 455443 21 111111223444457888999999999999865544444 34
Q ss_pred hccccCCCCEEEEecCCCcH--HHHHhhCC
Q psy6714 196 IKPVFNESNLLISVAGGVPI--KNMEQALP 223 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~i--e~L~~~l~ 223 (303)
+...++++.+||.+.-|... +.|.+.+.
T Consensus 222 ~l~~mk~gailIN~sRG~~vd~~aL~~aL~ 251 (332)
T PRK08605 222 LFKHFKKGAVFVNCARGSLVDTKALLDALD 251 (332)
T ss_pred HHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 45567889999988866554 45555554
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.8e-05 Score=73.89 Aligned_cols=66 Identities=11% Similarity=0.084 Sum_probs=48.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh-------------cHHH---H-hhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI-------------VSKA---T-GTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r-------------~~e~---l-~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
||||||||+|.||. .++..+.. ..++ + ...|.....+..+++.++|+|++|++++.+.+++.
T Consensus 1 mmrIgIIG~G~iG~-~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~~~~~~ 79 (265)
T PRK13304 1 MLKIGIVGCGAIAS-LITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAVEEVVP 79 (265)
T ss_pred CCEEEEECccHHHH-HHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHHHHHHH
Confidence 58999999999998 45443221 1122 2 24567777888888889999999999999998887
Q ss_pred hhcc
Q psy6714 195 DIKP 198 (303)
Q Consensus 195 eI~~ 198 (303)
++..
T Consensus 80 ~al~ 83 (265)
T PRK13304 80 KSLE 83 (265)
T ss_pred HHHH
Confidence 7654
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.4e-05 Score=76.73 Aligned_cols=138 Identities=12% Similarity=0.178 Sum_probs=97.2
Q ss_pred cCCCcEEEEcCChhhHHHHHHH-----------Hhh--------cHHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHH
Q psy6714 130 WNRSDKQIAGTTERGPGALIAS-----------LNI--------VSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVP 190 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~a-----------l~r--------~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~ 190 (303)
+..++|+|||+|.+|. ..+.. +++ ..+++.+.|+.+ .+..|+++.||+|++.+|...-.
T Consensus 34 LkgKtIaIIGyGSqG~-AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt~q~ 111 (487)
T PRK05225 34 LKGKKIVIVGCGAQGL-NQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDKQHS 111 (487)
T ss_pred hCCCEEEEEccCHHHH-HHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChHHHH
Confidence 4568999999999999 33322 111 122444568866 67889999999999999988766
Q ss_pred HHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHH-----hh--hCCcEEEE-eC--CCCCHHHHHHH
Q psy6714 191 VALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPA-----LV--RQGASVFV-RG--SSASDQDAQTV 260 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~-----~v--~~G~til~-~g--~~~~~e~~e~V 260 (303)
.+.+++.+.++++.++ ..+-|..+....-..+++..|+-+-|--|. .+ +.|++.++ .- .+.+....+.+
T Consensus 112 ~v~~~i~p~LK~Ga~L-~fsHGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~qD~~g~a~~~a 190 (487)
T PRK05225 112 DVVRAVQPLMKQGAAL-GYSHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEGMAIA 190 (487)
T ss_pred HHHHHHHhhCCCCCEE-EecCCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecCCCCchHHHHH
Confidence 7778899999998864 577788765443344666778877766553 12 35665433 32 35667788999
Q ss_pred HHHHHhcCCc
Q psy6714 261 INLFKSVGTC 270 (303)
Q Consensus 261 ~~Lfs~iG~~ 270 (303)
......+|..
T Consensus 191 la~a~~iG~~ 200 (487)
T PRK05225 191 KAWAAATGGH 200 (487)
T ss_pred HHHHHHhCCC
Confidence 9999999854
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00014 Score=69.66 Aligned_cols=168 Identities=19% Similarity=0.207 Sum_probs=111.4
Q ss_pred cCCCcEEEEcCChhhHHH-HHHH---------Hhh---cHHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHH-h
Q psy6714 130 WNRSDKQIAGTTERGPGA-LIAS---------LNI---VSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALN-D 195 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~-La~a---------l~r---~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~-e 195 (303)
++.+||+|||.|.=|.+- +-+. ++. .-+++.+.|+.+ .+..|+++++|+|++-+|+..-.+|.+ +
T Consensus 16 LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V-~~v~ea~k~ADvim~L~PDe~q~~vy~~~ 94 (338)
T COG0059 16 LKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKV-YTVEEAAKRADVVMILLPDEQQKEVYEKE 94 (338)
T ss_pred hcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEe-ecHHHHhhcCCEEEEeCchhhHHHHHHHH
Confidence 356799999999999831 2111 111 124566889986 678899999999999999999999997 8
Q ss_pred hccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHh-------hhCCcEEEE-eCCCCCHHHHHHHHHHHHhc
Q psy6714 196 IKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPAL-------VRQGASVFV-RGSSASDQDAQTVINLFKSV 267 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~-------v~~G~til~-~g~~~~~e~~e~V~~Lfs~i 267 (303)
|.|.|+.++. +..+-|..+..-.-..|++..|+-+-|--|.. -+.|++.++ .-.+.+....+........+
T Consensus 95 I~p~Lk~G~a-L~FaHGfNihf~~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~sG~a~~~Ala~Akgi 173 (338)
T COG0059 95 IAPNLKEGAA-LGFAHGFNIHFGLIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDASGKALDIALAYAKGI 173 (338)
T ss_pred hhhhhcCCce-EEeccccceecceecCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEEeCCCchHHHHHHHHHHhc
Confidence 9999999884 56888887743222334566777776665542 135665444 33455677889999999999
Q ss_pred CC----cEE---cCC---CCchhhhhhccchHHHHHHHHHhh
Q psy6714 268 GT----CEE---VPE---YLLDGITGLSGSGPAYRYEVTSNE 299 (303)
Q Consensus 268 G~----~v~---vdE---~~~Da~tAlsGsgPAf~~~~ie~~ 299 (303)
|. +++ ..| +.|-.-+.|+|..-+.+-.=+|-|
T Consensus 174 Gg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetL 215 (338)
T COG0059 174 GGTRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETL 215 (338)
T ss_pred CCCccceEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHH
Confidence 93 222 223 345555566654444443333333
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.3e-05 Score=75.69 Aligned_cols=93 Identities=15% Similarity=0.100 Sum_probs=62.0
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------hcHHHHhhCCCeEecChHHhhcCCCEEEEeeCCcc-HHHHH-Hhhc
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------IVSKATGTMGAKITFDNKEVTLNSEVIILAVKPHI-VPVAL-NDIK 197 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~-v~~VL-~eI~ 197 (303)
+..|+|||||+|.||. .++..+. +..+.... .+....+..+++++||+|++++|... ...++ +++.
T Consensus 144 l~g~~VgIIG~G~IG~-~vA~~L~~~G~~V~~~d~~~~~~~~-~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l 221 (330)
T PRK12480 144 VKNMTVAIIGTGRIGA-ATAKIYAGFGATITAYDAYPNKDLD-FLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMF 221 (330)
T ss_pred cCCCEEEEECCCHHHH-HHHHHHHhCCCEEEEEeCChhHhhh-hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHH
Confidence 5678999999999999 4554432 11111111 12234577889999999999998543 44444 5566
Q ss_pred cccCCCCEEEEecCCCc--HHHHHhhCCC
Q psy6714 198 PVFNESNLLISVAGGVP--IKNMEQALPK 224 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV~--ie~L~~~l~~ 224 (303)
..++++.++|.+.-|.- .+.|.+.|.+
T Consensus 222 ~~mk~gavlIN~aRG~~vd~~aL~~aL~~ 250 (330)
T PRK12480 222 DHVKKGAILVNAARGAVINTPDLIAAVND 250 (330)
T ss_pred hcCCCCcEEEEcCCccccCHHHHHHHHHc
Confidence 67889999998886654 4567666653
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.88 E-value=6.8e-05 Score=75.61 Aligned_cols=105 Identities=15% Similarity=0.236 Sum_probs=73.1
Q ss_pred CCeEecChHHhhcC---CCEEEEeeC-CccHHHHHHhhccccCCCCEEEEecCCCcHH--HHHhhCC-CCCceEEE-ecC
Q psy6714 163 GAKITFDNKEVTLN---SEVIILAVK-PHIVPVALNDIKPVFNESNLLISVAGGVPIK--NMEQALP-KNSRIIRA-MPN 234 (303)
Q Consensus 163 Gv~v~~d~~eav~~---ADIVILAVp-P~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie--~L~~~l~-~~~~VVr~-mPn 234 (303)
|+....+++++++. +|+||+||| ...+++|+.++.+++.++.+||...+....+ .+.+.+. .+..++.+ +..
T Consensus 38 g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSG 117 (459)
T PRK09287 38 KIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSG 117 (459)
T ss_pred CeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCC
Confidence 47788899998874 899999998 6688999999999998999999665433322 3333332 22333332 112
Q ss_pred cHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCc
Q psy6714 235 TPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTC 270 (303)
Q Consensus 235 ~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~ 270 (303)
.+.....|.++++.| +++..+.++.+|+.+|..
T Consensus 118 G~~gA~~G~siM~GG---~~~a~~~~~piL~~ia~~ 150 (459)
T PRK09287 118 GEEGALHGPSIMPGG---QKEAYELVAPILEKIAAK 150 (459)
T ss_pred CHHHHhcCCEEEEeC---CHHHHHHHHHHHHHHhhh
Confidence 222334566676666 788999999999999964
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.4e-05 Score=74.72 Aligned_cols=93 Identities=13% Similarity=0.178 Sum_probs=65.2
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH----------hhcH---HHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHHH-
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL----------NIVS---KATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVALN- 194 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al----------~r~~---e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL~- 194 (303)
+..|+|||||+|.||.. ++..+ ++.. +...+.|+....+..++++.||+|++++| ......++.
T Consensus 190 L~gktVGIvG~G~IG~~-vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~ 268 (385)
T PRK07574 190 LEGMTVGIVGAGRIGLA-VLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDA 268 (385)
T ss_pred cCCCEEEEECCCHHHHH-HHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCH
Confidence 55789999999999994 55432 2221 22335577656788999999999999998 555677763
Q ss_pred hhccccCCCCEEEEecCCC--cHHHHHhhCC
Q psy6714 195 DIKPVFNESNLLISVAGGV--PIKNMEQALP 223 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV--~ie~L~~~l~ 223 (303)
++...++++.++|.+.=|- +.+.|.+.|.
T Consensus 269 ~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~ 299 (385)
T PRK07574 269 DVLSRMKRGSYLVNTARGKIVDRDAVVRALE 299 (385)
T ss_pred HHHhcCCCCcEEEECCCCchhhHHHHHHHHH
Confidence 4555688999999876443 3456666654
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.1e-05 Score=73.29 Aligned_cols=94 Identities=20% Similarity=0.214 Sum_probs=64.1
Q ss_pred ccCCCcEEEEcCChhhHHHHHHHHh----------hcHH--HHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH-H
Q psy6714 129 RWNRSDKQIAGTTERGPGALIASLN----------IVSK--ATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL-N 194 (303)
Q Consensus 129 ~~~~mkIgIIGlG~MG~~~La~al~----------r~~e--~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL-~ 194 (303)
.+..++|||||+|.||. .++..++ +... .....|+.. .+..+++++||+|++++| ......++ .
T Consensus 147 ~L~gktvgIiG~G~IG~-~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T~~~i~~ 224 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQ-AVARRAKGFGMRILYYSRTRKPEAEKELGAEY-RPLEELLRESDFVSLHVPLTKETYHMINE 224 (333)
T ss_pred CCCCCEEEEECcCHHHH-HHHHHHHHCCCEEEEECCCCChhhHHHcCCEe-cCHHHHHhhCCEEEEeCCCChHHhhccCH
Confidence 35678999999999999 5665432 2111 122445543 578889999999999998 44456665 3
Q ss_pred hhccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 195 DIKPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
+....++++.++|.+.-| ++.+.|.+.|.+
T Consensus 225 ~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 225 ERLKLMKPTAILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred HHHhcCCCCeEEEECcCchhcCHHHHHHHHHc
Confidence 455567889999977644 344667776654
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=7.8e-05 Score=73.65 Aligned_cols=94 Identities=14% Similarity=0.186 Sum_probs=66.2
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH----------hhc---HHHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH-H
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL----------NIV---SKATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL-N 194 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al----------~r~---~e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL-~ 194 (303)
+..++|||||+|.||.. ++..+ ++. .+...+.|+....+..+++.+||+|++++| ......++ +
T Consensus 197 L~gktVGIVG~G~IG~~-vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~ 275 (386)
T PLN03139 197 LEGKTVGTVGAGRIGRL-LLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNK 275 (386)
T ss_pred CCCCEEEEEeecHHHHH-HHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCH
Confidence 55789999999999994 55432 221 122345677665688999999999999998 56677776 3
Q ss_pred hhccccCCCCEEEEecCCC--cHHHHHhhCCC
Q psy6714 195 DIKPVFNESNLLISVAGGV--PIKNMEQALPK 224 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV--~ie~L~~~l~~ 224 (303)
++...++++.++|.+.=|- +.+.|.+.|.+
T Consensus 276 ~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s 307 (386)
T PLN03139 276 ERIAKMKKGVLIVNNARGAIMDTQAVADACSS 307 (386)
T ss_pred HHHhhCCCCeEEEECCCCchhhHHHHHHHHHc
Confidence 4556688999999876443 34567666653
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00019 Score=66.39 Aligned_cols=102 Identities=16% Similarity=0.271 Sum_probs=68.8
Q ss_pred hcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCCCcH-HHHHhhCCCCCceEEEecCcHHhh-hCC------cEE
Q psy6714 174 TLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPI-KNMEQALPKNSRIIRAMPNTPALV-RQG------ASV 245 (303)
Q Consensus 174 v~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~i-e~L~~~l~~~~~VVr~mPn~p~~v-~~G------~ti 245 (303)
+..+|+||+|||..++.++++.+++++.++++||++.+|+.. +.+.+.++. ..++..+..+.+.. +.| ...
T Consensus 57 ~~~~D~iiv~vKs~~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~-~~v~~g~~~~~~~~~~pg~v~~~~~~~ 135 (293)
T TIGR00745 57 LPPADLVIITVKAYQTEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPA-RRILGGVVTHGAVREEPGVVHHAGLGA 135 (293)
T ss_pred cCCCCEEEEeccchhHHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCc-cCEEEEEEEEeeEEcCCcEEEEecccc
Confidence 568999999999999999999999999888999999999975 557777764 24544443332211 111 111
Q ss_pred EEeCC-CCCHHHHHHHHHHHHhcCCcEEcCCC
Q psy6714 246 FVRGS-SASDQDAQTVINLFKSVGTCEEVPEY 276 (303)
Q Consensus 246 l~~g~-~~~~e~~e~V~~Lfs~iG~~v~vdE~ 276 (303)
+..|. +...+..+.+.++|+..|..+.+.++
T Consensus 136 ~~iG~~~~~~~~~~~l~~~l~~~~~~~~~~~d 167 (293)
T TIGR00745 136 TKIGDYVGENEAVEALAELLNEAGIPAELHGD 167 (293)
T ss_pred EEEecCCCchHHHHHHHHHHHhCCCCCEecch
Confidence 22222 11225567888899998976655543
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0011 Score=62.44 Aligned_cols=121 Identities=17% Similarity=0.202 Sum_probs=81.7
Q ss_pred HHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHHHhhccccCCCCEEEEecCCCcH---HHHHhhCCCCCceEEEec
Q psy6714 158 ATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVALNDIKPVFNESNLLISVAGGVPI---KNMEQALPKNSRIIRAMP 233 (303)
Q Consensus 158 ~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL~eI~~~L~~g~IVVSiaaGV~i---e~L~~~l~~~~~VVr~mP 233 (303)
+..+.|+++++|..++++.++|.+|-+|-- ..-.+.++|.+++..|.+|..++.--+. ..|+..|.-...-|.+++
T Consensus 64 ~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvss 143 (340)
T COG4007 64 RVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSS 143 (340)
T ss_pred HHHhcCcEEecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccc
Confidence 345789999999999999999999999955 7788889999999888876655432222 234444432223345555
Q ss_pred CcHHhh----hCCcEEEEeC-----CCCCHHHHHHHHHHHHhcCCc-EEcCCCCc
Q psy6714 234 NTPALV----RQGASVFVRG-----SSASDQDAQTVINLFKSVGTC-EEVPEYLL 278 (303)
Q Consensus 234 n~p~~v----~~G~til~~g-----~~~~~e~~e~V~~Lfs~iG~~-v~vdE~~~ 278 (303)
.||..+ .++..++..- +-.++++.+...+|.+++|+. +.++.+..
T Consensus 144 mHPAgvPGtp~h~~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~padv~ 198 (340)
T COG4007 144 MHPAGVPGTPQHGHYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPADVV 198 (340)
T ss_pred cCCCCCCCCCCCceEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCHHHH
Confidence 555433 4555554411 223688999999999999986 45564433
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00027 Score=69.83 Aligned_cols=133 Identities=14% Similarity=0.223 Sum_probs=85.4
Q ss_pred CCcEEEEcCChhhHHHHHHH----------HhhcHHH----HhhC----CCeEecChHHh---hcCCCEEEEeeCC-ccH
Q psy6714 132 RSDKQIAGTTERGPGALIAS----------LNIVSKA----TGTM----GAKITFDNKEV---TLNSEVIILAVKP-HIV 189 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a----------l~r~~e~----l~e~----Gv~v~~d~~ea---v~~ADIVILAVpP-~~v 189 (303)
.+.||+||||.||. -|++- +|++.++ +++. .+..+.+.+|. ++..--|+|.|+. ..+
T Consensus 3 ~~~iGviGLaVMG~-NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~V 81 (473)
T COG0362 3 KADIGVIGLAVMGS-NLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPV 81 (473)
T ss_pred ccceeeEehhhhhH-HHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcH
Confidence 45799999999999 57654 3444432 2322 23445566554 5678999999986 668
Q ss_pred HHHHHhhccccCCCCEEEEecCCCcHHHH---HhhCCCCCceEEEecCcHHh-hhCCcEEEEeCCCCCHHHHHHHHHHHH
Q psy6714 190 PVALNDIKPVFNESNLLISVAGGVPIKNM---EQALPKNSRIIRAMPNTPAL-VRQGASVFVRGSSASDQDAQTVINLFK 265 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSiaaGV~ie~L---~~~l~~~~~VVr~mPn~p~~-v~~G~til~~g~~~~~e~~e~V~~Lfs 265 (303)
..++++|+|+|.++.|||.-=+..=.+++ +++...+..+|.+.-+-..+ ...|.+++..| +++..+.|..+|+
T Consensus 82 D~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpGG---~~eay~~v~pil~ 158 (473)
T COG0362 82 DAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPGG---QKEAYELVAPILT 158 (473)
T ss_pred HHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCCC---CHHHHHHHHHHHH
Confidence 89999999999999999854333322333 33334344555542111111 11355555554 7899999999999
Q ss_pred hcC
Q psy6714 266 SVG 268 (303)
Q Consensus 266 ~iG 268 (303)
.+.
T Consensus 159 ~Ia 161 (473)
T COG0362 159 KIA 161 (473)
T ss_pred HHH
Confidence 985
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00013 Score=74.67 Aligned_cols=94 Identities=11% Similarity=0.148 Sum_probs=65.0
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------h--cHHHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH-Hh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------I--VSKATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL-ND 195 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r--~~e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL-~e 195 (303)
+..++|||||+|.||. .++..++ + ..+...+.|+....+..+++++||+|++++| ......++ .+
T Consensus 136 l~gktvgIiG~G~IG~-~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~ 214 (525)
T TIGR01327 136 LYGKTLGVIGLGRIGS-IVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAE 214 (525)
T ss_pred cCCCEEEEECCCHHHH-HHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHH
Confidence 4568999999999999 4554422 2 1233456677665688999999999999998 44556665 23
Q ss_pred hccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 196 IKPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
....++++.++|.+.=| ++.+.|.+.|..
T Consensus 215 ~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 245 (525)
T TIGR01327 215 ELAKMKKGVIIVNCARGGIIDEAALYEALEE 245 (525)
T ss_pred HHhcCCCCeEEEEcCCCceeCHHHHHHHHHc
Confidence 44467789999977643 344567666653
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0018 Score=64.04 Aligned_cols=108 Identities=19% Similarity=0.328 Sum_probs=61.9
Q ss_pred CeEecChHHhhcCCCEEEEeeC-Cc---------cHHHHHHhhccccCCCCEEE--EecCCCcHHHHHhhCCCCC--ceE
Q psy6714 164 AKITFDNKEVTLNSEVIILAVK-PH---------IVPVALNDIKPVFNESNLLI--SVAGGVPIKNMEQALPKNS--RII 229 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVp-P~---------~v~~VL~eI~~~L~~g~IVV--SiaaGV~ie~L~~~l~~~~--~VV 229 (303)
+..++|..++++++|++||||+ |+ .++.++++|.++++..++|| |++--=+.+.+++.+.... +-+
T Consensus 64 l~fTtd~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f 143 (414)
T COG1004 64 LRFTTDYEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDF 143 (414)
T ss_pred EEEEcCHHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCc
Confidence 5678889999999999999995 33 36678888988886656666 5543223445554332111 111
Q ss_pred EEecCcHHhhhCCcE--------EEEeCCCCCHHHHHHHHHHHHhc---CCcEEc
Q psy6714 230 RAMPNTPALVRQGAS--------VFVRGSSASDQDAQTVINLFKSV---GTCEEV 273 (303)
Q Consensus 230 r~mPn~p~~v~~G~t--------il~~g~~~~~e~~e~V~~Lfs~i---G~~v~v 273 (303)
.+.-| |.=.++|.. -++.|.. ++...+.+.+|+..+ ..++.+
T Consensus 144 ~v~~N-PEFLREG~Av~D~~~PdRIViG~~-~~~a~~~~~ely~~~~~~~~p~l~ 196 (414)
T COG1004 144 EVASN-PEFLREGSAVYDFLYPDRIVIGVR-SERAAAVLRELYAPFLRQDVPILF 196 (414)
T ss_pred eEecC-hHHhcCcchhhhccCCCeEEEccC-ChhHHHHHHHHHhhhhhcCCCEEE
Confidence 22223 322223321 1233322 334677888888775 555444
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00016 Score=74.00 Aligned_cols=93 Identities=13% Similarity=0.150 Sum_probs=65.0
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH----------hh--cHHHHhhCCCeEecChHHhhcCCCEEEEeeCC-ccHHHHH-Hh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL----------NI--VSKATGTMGAKITFDNKEVTLNSEVIILAVKP-HIVPVAL-ND 195 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al----------~r--~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL-~e 195 (303)
+..++|||||+|.||. .++..+ ++ ..+...+.|+... +..+++++||+|++++|. .....++ .+
T Consensus 138 l~gktvgIiG~G~IG~-~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~ 215 (526)
T PRK13581 138 LYGKTLGIIGLGRIGS-EVAKRAKAFGMKVIAYDPYISPERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLIGAE 215 (526)
T ss_pred cCCCEEEEECCCHHHH-HHHHHHHhCCCEEEEECCCCChhHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcCHH
Confidence 4578999999999999 455442 22 1233446677654 788999999999999984 4566666 34
Q ss_pred hccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 196 IKPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
....++++.++|.+.=| ++.+.|.+.|..
T Consensus 216 ~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 216 ELAKMKPGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred HHhcCCCCeEEEECCCCceeCHHHHHHHHhc
Confidence 55567789999977643 344567666653
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0015 Score=62.66 Aligned_cols=105 Identities=10% Similarity=0.132 Sum_probs=77.9
Q ss_pred hHHhhcCCCEEEEeeC-CccHH-HHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEE
Q psy6714 170 NKEVTLNSEVIILAVK-PHIVP-VALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFV 247 (303)
Q Consensus 170 ~~eav~~ADIVILAVp-P~~v~-~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~ 247 (303)
..+++++||+||.||+ ...++ .++.++...+++++||.|..+++.+..|.+.+....+++.+|.-.|...- ...=++
T Consensus 73 ~~~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~-~lvEVv 151 (314)
T PRK08269 73 AADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLM-PLVEVS 151 (314)
T ss_pred hHHHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccC-ceEEEe
Confidence 5678899999999997 44455 45577877888999999999999999999877533467777654443211 122245
Q ss_pred eCCCCCHHHHHHHHHHHHhcCCc-EEcCC
Q psy6714 248 RGSSASDQDAQTVINLFKSVGTC-EEVPE 275 (303)
Q Consensus 248 ~g~~~~~e~~e~V~~Lfs~iG~~-v~vdE 275 (303)
.+...+++.++.+..+|..+|+. +.+.+
T Consensus 152 ~g~~t~~e~~~~~~~ll~~lGk~~v~v~d 180 (314)
T PRK08269 152 PSDATDPAVVDRLAALLERIGKVPVVCGP 180 (314)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEecC
Confidence 66788999999999999999975 55543
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00015 Score=69.31 Aligned_cols=94 Identities=13% Similarity=0.173 Sum_probs=60.5
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcH-------HHHhhCCCeE-ecChHHhhcCCCEEEEeeC-CccHHHHH-Hhhccc
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIVS-------KATGTMGAKI-TFDNKEVTLNSEVIILAVK-PHIVPVAL-NDIKPV 199 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~~-------e~l~e~Gv~v-~~d~~eav~~ADIVILAVp-P~~v~~VL-~eI~~~ 199 (303)
+..++|||||+|.||.. ++..++... ....+.|+.. ..+..+++++||+|++++| ......++ .+....
T Consensus 120 L~gktvgIiG~G~IG~~-vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~ 198 (303)
T PRK06436 120 LYNKSLGILGYGGIGRR-VALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSL 198 (303)
T ss_pred CCCCEEEEECcCHHHHH-HHHHHHHCCCEEEEECCCCcccCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhc
Confidence 45789999999999994 554322110 0111234322 4577889999999999998 44455555 234445
Q ss_pred cCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 200 FNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 200 L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
++++.++|.+.=| ++.+.|.+.+..
T Consensus 199 mk~ga~lIN~sRG~~vd~~aL~~aL~~ 225 (303)
T PRK06436 199 FRKGLAIINVARADVVDKNDMLNFLRN 225 (303)
T ss_pred CCCCeEEEECCCccccCHHHHHHHHHc
Confidence 7789999976633 445667766653
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00033 Score=67.19 Aligned_cols=94 Identities=16% Similarity=0.132 Sum_probs=59.5
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcH------HHH-h-hCCCeE---ecChHHhhcCCCEEEEeeC-CccHHHHHH-hh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIVS------KAT-G-TMGAKI---TFDNKEVTLNSEVIILAVK-PHIVPVALN-DI 196 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~~------e~l-~-e~Gv~v---~~d~~eav~~ADIVILAVp-P~~v~~VL~-eI 196 (303)
+..++|||||+|.||.. ++..++..- ... . ..++.. ..+..+++++||+|++++| ......++. +.
T Consensus 134 l~g~tvgIvG~G~IG~~-vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~ 212 (312)
T PRK15469 134 REDFTIGILGAGVLGSK-VAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQL 212 (312)
T ss_pred cCCCEEEEECCCHHHHH-HHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHH
Confidence 34679999999999994 554322110 000 0 012221 2356788999999999998 455666663 35
Q ss_pred ccccCCCCEEEEecCCC--cHHHHHhhCCC
Q psy6714 197 KPVFNESNLLISVAGGV--PIKNMEQALPK 224 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV--~ie~L~~~l~~ 224 (303)
...++++.++|.+.=|- +.+.|.+.|..
T Consensus 213 l~~mk~ga~lIN~aRG~vVde~aL~~aL~~ 242 (312)
T PRK15469 213 LEQLPDGAYLLNLARGVHVVEDDLLAALDS 242 (312)
T ss_pred HhcCCCCcEEEECCCccccCHHHHHHHHhc
Confidence 55678899999877443 44567776654
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00017 Score=63.24 Aligned_cols=93 Identities=16% Similarity=0.193 Sum_probs=58.3
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCC-ccHHHHH-H
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------IVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKP-HIVPVAL-N 194 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL-~ 194 (303)
+..++|||||+|.||. .++..++ +... .....++. ..+..++++.||+|++++|- .....++ +
T Consensus 34 l~g~tvgIiG~G~IG~-~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~-~~~l~ell~~aDiv~~~~plt~~T~~li~~ 111 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGR-AVARRLKAFGMRVIGYDRSPKPEEGADEFGVE-YVSLDELLAQADIVSLHLPLTPETRGLINA 111 (178)
T ss_dssp STTSEEEEESTSHHHH-HHHHHHHHTT-EEEEEESSCHHHHHHHHTTEE-ESSHHHHHHH-SEEEE-SSSSTTTTTSBSH
T ss_pred cCCCEEEEEEEcCCcC-eEeeeeecCCceeEEecccCChhhhcccccce-eeehhhhcchhhhhhhhhccccccceeeee
Confidence 3467899999999999 5665432 2222 13455664 46888999999999999983 2233333 2
Q ss_pred hhccccCCCCEEEEecCCC--cHHHHHhhCCC
Q psy6714 195 DIKPVFNESNLLISVAGGV--PIKNMEQALPK 224 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV--~ie~L~~~l~~ 224 (303)
+....++++.++|.+.=|- +.+.|.+.+.+
T Consensus 112 ~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 112 EFLAKMKPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp HHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred eeeeccccceEEEeccchhhhhhhHHHHHHhh
Confidence 2333466888999887443 44567776653
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00038 Score=66.67 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=61.0
Q ss_pred ccCCCcEEEEcCChhhHHHHHHHHh----------hcHHHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH-Hhh
Q psy6714 129 RWNRSDKQIAGTTERGPGALIASLN----------IVSKATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL-NDI 196 (303)
Q Consensus 129 ~~~~mkIgIIGlG~MG~~~La~al~----------r~~e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL-~eI 196 (303)
.+..+++||||+|.||. .++..++ +.. .....++. ..+..+++++||+|++++| -.....++ ++.
T Consensus 142 ~L~gktvGIiG~G~IG~-~vA~~~~~fgm~V~~~d~~~-~~~~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~ 218 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGK-RVAKIAQAFGAKVVYYSTSG-KNKNEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLIAYKE 218 (311)
T ss_pred ccCCCEEEEECCCHHHH-HHHHHHhhcCCEEEEECCCc-cccccCce-eecHHHHhhcCCEEEEeCCCCchhhcccCHHH
Confidence 45678999999999999 4554322 111 01122333 2467899999999999998 44455555 233
Q ss_pred ccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 197 KPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
...++++.++|.+.=| |+.+.|.+.|..
T Consensus 219 ~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~ 248 (311)
T PRK08410 219 LKLLKDGAILINVGRGGIVNEKDLAKALDE 248 (311)
T ss_pred HHhCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 3457789999988743 345677777754
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00035 Score=67.99 Aligned_cols=93 Identities=15% Similarity=0.131 Sum_probs=58.6
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH----------hhcHH--HHhh-------------CCCeEecChHHhhcCCCEEEEee
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL----------NIVSK--ATGT-------------MGAKITFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al----------~r~~e--~l~e-------------~Gv~v~~d~~eav~~ADIVILAV 184 (303)
+..++|||||+|.||.. ++..+ ++... .... .+. ...+..+++.+||+|++++
T Consensus 157 l~gktvGIiG~G~IG~~-vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~l 234 (347)
T PLN02928 157 LFGKTVFILGYGAIGIE-LAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCC 234 (347)
T ss_pred CCCCEEEEECCCHHHHH-HHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECC
Confidence 55789999999999994 44432 22110 1100 011 2346788999999999999
Q ss_pred C-CccHHHHH-HhhccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 185 K-PHIVPVAL-NDIKPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 185 p-P~~v~~VL-~eI~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
| ......++ ++....++++.++|.+.=| |+.+.|.+.|..
T Consensus 235 Plt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~ 278 (347)
T PLN02928 235 TLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALES 278 (347)
T ss_pred CCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 8 33344454 2344457789999987633 345667776654
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0017 Score=64.40 Aligned_cols=84 Identities=25% Similarity=0.300 Sum_probs=55.8
Q ss_pred CCcEEEEcCChhhHHHHHHHH--------------------hhc--------HH----HHhhCC-CeEecChHHhhcCCC
Q psy6714 132 RSDKQIAGTTERGPGALIASL--------------------NIV--------SK----ATGTMG-AKITFDNKEVTLNSE 178 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al--------------------~r~--------~e----~l~e~G-v~v~~d~~eav~~AD 178 (303)
.++|||||||-||-+ ++..+ ++- .+ ...+.| ++.++|..++ +.||
T Consensus 9 ~~~I~ViGLGYVGLP-lA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-~~~d 86 (436)
T COG0677 9 SATIGVIGLGYVGLP-LAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-KECD 86 (436)
T ss_pred ceEEEEEccccccHH-HHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-ccCC
Confidence 489999999999975 33221 100 01 122344 5677777764 4899
Q ss_pred EEEEeeC-Cc---------cHHHHHHhhccccCCCCEEE--EecCCCcHHH
Q psy6714 179 VIILAVK-PH---------IVPVALNDIKPVFNESNLLI--SVAGGVPIKN 217 (303)
Q Consensus 179 IVILAVp-P~---------~v~~VL~eI~~~L~~g~IVV--SiaaGV~ie~ 217 (303)
++|+||| |- .+++..+.|+++|++|.+|| |++-.=+.+.
T Consensus 87 v~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~ 137 (436)
T COG0677 87 VFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEE 137 (436)
T ss_pred EEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHH
Confidence 9999997 31 25677788999999999988 6554333443
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00012 Score=61.63 Aligned_cols=106 Identities=12% Similarity=0.097 Sum_probs=58.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHh-----------hcHHH---H-hhCCC----eEecChHHhhcCCCEEEEeeCCccH--H
Q psy6714 132 RSDKQIAGTTERGPGALIASLN-----------IVSKA---T-GTMGA----KITFDNKEVTLNSEVIILAVKPHIV--P 190 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~-----------r~~e~---l-~e~Gv----~v~~d~~eav~~ADIVILAVpP~~v--~ 190 (303)
.++|+|||+|.||.. ++..+. +..++ + .+.+. ....+..++++++|+||+|+|+... .
T Consensus 19 ~~~i~iiG~G~~g~~-~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~ 97 (155)
T cd01065 19 GKKVLILGAGGAARA-VAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGD 97 (155)
T ss_pred CCEEEEECCcHHHHH-HHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCC
Confidence 578999999999994 444321 11222 1 23332 1345666778999999999997764 2
Q ss_pred HHHHhhccccCCCCEEEEecCCCcH-HHHHhhCCCCCceEEEecCcHHhhhCC
Q psy6714 191 VALNDIKPVFNESNLLISVAGGVPI-KNMEQALPKNSRIIRAMPNTPALVRQG 242 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSiaaGV~i-e~L~~~l~~~~~VVr~mPn~p~~v~~G 242 (303)
.+... ...++++++|+.+. .++. ..+.+.+.. .-+++++.+++.+.++
T Consensus 98 ~~~~~-~~~~~~~~~v~D~~-~~~~~~~l~~~~~~--~g~~~v~g~~~~~~q~ 146 (155)
T cd01065 98 ELPLP-PSLLKPGGVVYDVV-YNPLETPLLKEARA--LGAKTIDGLEMLVYQA 146 (155)
T ss_pred CCCCC-HHHcCCCCEEEEcC-cCCCCCHHHHHHHH--CCCceeCCHHHHHHHH
Confidence 22111 12245777777442 2222 134333321 1246677777665544
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00067 Score=54.57 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=55.6
Q ss_pred CcEEEEcCChhhHHHHHHHHh-------------hcHH---H-HhhCCCeEecChHHhhc--CCCEEEEeeCCccHHHHH
Q psy6714 133 SDKQIAGTTERGPGALIASLN-------------IVSK---A-TGTMGAKITFDNKEVTL--NSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~-------------r~~e---~-l~e~Gv~v~~d~~eav~--~ADIVILAVpP~~v~~VL 193 (303)
|||||||+|.+|.. ....+. ...+ . .+.+|+...+|..++++ +.|+|++|+|+..-.+++
T Consensus 1 i~v~iiG~G~~g~~-~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~ 79 (120)
T PF01408_consen 1 IRVGIIGAGSIGRR-HLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIA 79 (120)
T ss_dssp EEEEEESTSHHHHH-HHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHH
T ss_pred CEEEEECCcHHHHH-HHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHH
Confidence 58999999999983 332221 1112 2 34678998889998887 799999999988877777
Q ss_pred HhhccccCCCCEEEEec-CCCcHHHHHhh
Q psy6714 194 NDIKPVFNESNLLISVA-GGVPIKNMEQA 221 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSia-aGV~ie~L~~~ 221 (303)
..... .|.-|+.-- -+.+.+.++++
T Consensus 80 ~~~l~---~g~~v~~EKP~~~~~~~~~~l 105 (120)
T PF01408_consen 80 KKALE---AGKHVLVEKPLALTLEEAEEL 105 (120)
T ss_dssp HHHHH---TTSEEEEESSSSSSHHHHHHH
T ss_pred HHHHH---cCCEEEEEcCCcCCHHHHHHH
Confidence 66543 344444221 23355555443
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00036 Score=68.84 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=58.1
Q ss_pred cccCCCcEEEEcCChhhHHHHHHHHhhcH------HH-HhhCCC-eEecChHHhhcCCCEEEEeeCCcc-----HHHHH-
Q psy6714 128 ARWNRSDKQIAGTTERGPGALIASLNIVS------KA-TGTMGA-KITFDNKEVTLNSEVIILAVKPHI-----VPVAL- 193 (303)
Q Consensus 128 ~~~~~mkIgIIGlG~MG~~~La~al~r~~------e~-l~e~Gv-~v~~d~~eav~~ADIVILAVpP~~-----v~~VL- 193 (303)
+.+..++|||||+|+||. .++..++..- .. ..+.+. ....+..+++++||||++.+|-.. ...++
T Consensus 112 ~~L~gktvGIIG~G~IG~-~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~ 190 (378)
T PRK15438 112 FSLHDRTVGIVGVGNVGR-RLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLAD 190 (378)
T ss_pred CCcCCCEEEEECcCHHHH-HHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccC
Confidence 346688999999999999 4554322110 00 011111 123567889999999999998322 33333
Q ss_pred HhhccccCCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 194 NDIKPVFNESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
++....++++.++|.+.=| |+.+.|.+.+.
T Consensus 191 ~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~ 222 (378)
T PRK15438 191 EKLIRSLKPGAILINACRGAVVDNTALLTCLN 222 (378)
T ss_pred HHHHhcCCCCcEEEECCCchhcCHHHHHHHHH
Confidence 2334457789999988733 34556766664
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0003 Score=58.47 Aligned_cols=82 Identities=20% Similarity=0.202 Sum_probs=54.5
Q ss_pred CcEEEEcC-ChhhHHHHHHHHhhcH-----------H---------HH---hhCCCeEecChHHhhcCCCEEEEeeCCcc
Q psy6714 133 SDKQIAGT-TERGPGALIASLNIVS-----------K---------AT---GTMGAKITFDNKEVTLNSEVIILAVKPHI 188 (303)
Q Consensus 133 mkIgIIGl-G~MG~~~La~al~r~~-----------e---------~l---~e~Gv~v~~d~~eav~~ADIVILAVpP~~ 188 (303)
|||+|+|+ |.||. +++..+.... . .+ ...|+.+..+.+++++.+|+||-.+.|+.
T Consensus 1 mrV~i~G~~GrMG~-~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~p~~ 79 (124)
T PF01113_consen 1 MRVGIVGASGRMGR-AIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTNPDA 79 (124)
T ss_dssp EEEEEETTTSHHHH-HHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES-HHH
T ss_pred CEEEEECCCCHHHH-HHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCChHH
Confidence 78999999 99999 5665533211 0 11 14567788889999989999999999988
Q ss_pred HHHHHHhhccccCCCCEEEEecCCCcHHHH
Q psy6714 189 VPVALNDIKPVFNESNLLISVAGGVPIKNM 218 (303)
Q Consensus 189 v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L 218 (303)
+.+.++.... .+.-+|+-..|.+.+++
T Consensus 80 ~~~~~~~~~~---~g~~~ViGTTG~~~~~~ 106 (124)
T PF01113_consen 80 VYDNLEYALK---HGVPLVIGTTGFSDEQI 106 (124)
T ss_dssp HHHHHHHHHH---HT-EEEEE-SSSHHHHH
T ss_pred hHHHHHHHHh---CCCCEEEECCCCCHHHH
Confidence 8888876544 35566666778876543
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00045 Score=64.95 Aligned_cols=65 Identities=11% Similarity=0.154 Sum_probs=46.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh-------------cHHH----HhhCCC-eEecChHHhhcCCCEEEEeeCCccHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI-------------VSKA----TGTMGA-KITFDNKEVTLNSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r-------------~~e~----l~e~Gv-~v~~d~~eav~~ADIVILAVpP~~v~~VL 193 (303)
+|||||||+|.||. .++..+.. ..++ ..++|. ....+.++++.++|+|++|+++....++.
T Consensus 6 ~irIGIIG~G~IG~-~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h~e~~ 84 (271)
T PRK13302 6 ELRVAIAGLGAIGK-AIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVLRAIV 84 (271)
T ss_pred eeEEEEECccHHHH-HHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHHHHHH
Confidence 48999999999998 45543321 1222 224454 45678888889999999999998888887
Q ss_pred Hhhc
Q psy6714 194 NDIK 197 (303)
Q Consensus 194 ~eI~ 197 (303)
..+.
T Consensus 85 ~~aL 88 (271)
T PRK13302 85 EPVL 88 (271)
T ss_pred HHHH
Confidence 6654
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00048 Score=66.12 Aligned_cols=93 Identities=13% Similarity=0.135 Sum_probs=58.3
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcH------HH--HhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH-Hhhccc
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIVS------KA--TGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL-NDIKPV 199 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~~------e~--l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL-~eI~~~ 199 (303)
+..+++||||+|.||. .++..++-.. +. ....... ..+..+++.+||+|++++| ......++ ++....
T Consensus 145 l~gktvgIiG~G~IG~-~va~~l~~fg~~V~~~~~~~~~~~~~~-~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~ 222 (314)
T PRK06932 145 VRGSTLGVFGKGCLGT-EVGRLAQALGMKVLYAEHKGASVCREG-YTPFEEVLKQADIVTLHCPLTETTQNLINAETLAL 222 (314)
T ss_pred cCCCEEEEECCCHHHH-HHHHHHhcCCCEEEEECCCcccccccc-cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHh
Confidence 5578999999999999 4554322110 00 0000111 2367889999999999998 44455555 233445
Q ss_pred cCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 200 FNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 200 L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
++++.++|.+.=| |+.+.|.+.|.+
T Consensus 223 mk~ga~lIN~aRG~~Vde~AL~~aL~~ 249 (314)
T PRK06932 223 MKPTAFLINTGRGPLVDEQALLDALEN 249 (314)
T ss_pred CCCCeEEEECCCccccCHHHHHHHHHc
Confidence 7789999988733 345667776653
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0005 Score=67.86 Aligned_cols=94 Identities=15% Similarity=0.139 Sum_probs=57.7
Q ss_pred ccCCCcEEEEcCChhhHHHHHHHHhhcH--------HHHhhCCCeEecChHHhhcCCCEEEEeeCCc-----cHHHHH-H
Q psy6714 129 RWNRSDKQIAGTTERGPGALIASLNIVS--------KATGTMGAKITFDNKEVTLNSEVIILAVKPH-----IVPVAL-N 194 (303)
Q Consensus 129 ~~~~mkIgIIGlG~MG~~~La~al~r~~--------e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-----~v~~VL-~ 194 (303)
.+..++|||||+|+||. .++..+...- ......+.....+..+++++||+|++++|-. ....++ +
T Consensus 113 ~l~gktvGIIG~G~IG~-~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~ 191 (381)
T PRK00257 113 DLAERTYGVVGAGHVGG-RLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDE 191 (381)
T ss_pred CcCcCEEEEECCCHHHH-HHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCH
Confidence 35678999999999999 4554422110 0000111122346788899999999999843 234444 2
Q ss_pred hhccccCCCCEEEEecCCC--cHHHHHhhCC
Q psy6714 195 DIKPVFNESNLLISVAGGV--PIKNMEQALP 223 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV--~ie~L~~~l~ 223 (303)
+....++++.++|.+.=|- +.+.|.+.+.
T Consensus 192 ~~l~~mk~gailIN~aRG~vVde~AL~~aL~ 222 (381)
T PRK00257 192 AFLASLRPGAWLINASRGAVVDNQALREALL 222 (381)
T ss_pred HHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 3444577899999877443 3456666554
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0021 Score=62.35 Aligned_cols=151 Identities=13% Similarity=0.140 Sum_probs=82.6
Q ss_pred CCCcEEEEcC-ChhhHHHHHHHHhhcH--------------HHHhh-CC-Ce-----EecChH-HhhcCCCEEEEeeCCc
Q psy6714 131 NRSDKQIAGT-TERGPGALIASLNIVS--------------KATGT-MG-AK-----ITFDNK-EVTLNSEVIILAVKPH 187 (303)
Q Consensus 131 ~~mkIgIIGl-G~MG~~~La~al~r~~--------------e~l~e-~G-v~-----v~~d~~-eav~~ADIVILAVpP~ 187 (303)
+||||+|||. |.+|. .++..+.... +.+.+ .+ +. ...+.. ...+++|+||+|+|..
T Consensus 1 ~m~kVaIiGAtG~vG~-~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~ 79 (343)
T PRK00436 1 MMIKVGIVGASGYTGG-ELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHG 79 (343)
T ss_pred CCeEEEEECCCCHHHH-HHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcH
Confidence 4789999995 99998 4554432111 01111 11 11 112222 2456899999999999
Q ss_pred cHHHHHHhhccccCCCCEEEEecCCCcH---HHHHhhCCC-------CCceEEEecCcHH-hhhCCcEEEEeCCCCCHHH
Q psy6714 188 IVPVALNDIKPVFNESNLLISVAGGVPI---KNMEQALPK-------NSRIIRAMPNTPA-LVRQGASVFVRGSSASDQD 256 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVVSiaaGV~i---e~L~~~l~~-------~~~VVr~mPn~p~-~v~~G~til~~g~~~~~e~ 256 (303)
...+++..+.. .|+.||+..+..-. +...++.+. ...++..+|.... .+..+ .+ +..+++....
T Consensus 80 ~~~~~v~~a~~---aG~~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe~~~~~i~~~-~i-IanPgC~~t~ 154 (343)
T PRK00436 80 VSMDLAPQLLE---AGVKVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPELNREEIKGA-RL-IANPGCYPTA 154 (343)
T ss_pred HHHHHHHHHHh---CCCEEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCccCHHHhcCC-CE-EECCCCHHHH
Confidence 88888877643 57889988877654 233344321 1136677777643 23333 23 3334444444
Q ss_pred H-HHHHHHHHhcCCcEEcCCCCchhhhhhccchH
Q psy6714 257 A-QTVINLFKSVGTCEEVPEYLLDGITGLSGSGP 289 (303)
Q Consensus 257 ~-e~V~~Lfs~iG~~v~vdE~~~Da~tAlsGsgP 289 (303)
. -.+..|.+.-+.. -..-..+...++||.|-
T Consensus 155 ~~l~L~PL~~~~~i~--~~~i~v~~~~g~SGaG~ 186 (343)
T PRK00436 155 SLLALAPLLKAGLID--PDSIIIDAKSGVSGAGR 186 (343)
T ss_pred HHHHHHHHHHcCCCC--CCCEEEEEEEecccCCC
Confidence 3 3456665532222 11334555666666663
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0016 Score=61.75 Aligned_cols=125 Identities=13% Similarity=0.292 Sum_probs=84.7
Q ss_pred hCCCeEecChHHhhcCCCEEEEeeCCcc-HHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCC----CCCceEEEecCc
Q psy6714 161 TMGAKITFDNKEVTLNSEVIILAVKPHI-VPVALNDIKPVFNESNLLISVAGGVPIKNMEQALP----KNSRIIRAMPNT 235 (303)
Q Consensus 161 e~Gv~v~~d~~eav~~ADIVILAVpP~~-v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~----~~~~VVr~mPn~ 235 (303)
+.|+++++|..|+++++|++|+=+|--. -.++++.+.++++.|.+|-+++ -++.-.|...|. .+..|..+||..
T Consensus 126 daGvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tC-TIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 126 DLGLKVTTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHAC-TIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred HcCceEecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccc-cCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 5689999999999999999999998554 5788899999998888765543 455544544442 344566666532
Q ss_pred -HHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCC-cEEcCCCCchhhhhhccchH
Q psy6714 236 -PALVRQGASVFVRGSSASDQDAQTVINLFKSVGT-CEEVPEYLLDGITGLSGSGP 289 (303)
Q Consensus 236 -p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~-~v~vdE~~~Da~tAlsGsgP 289 (303)
|.. .|...+.- .-.++++.+.+.+|.++.|+ .+.++.+....+..+++..-
T Consensus 205 VPgt--~Gq~~i~e-gyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~DMgS~VT 257 (342)
T PRK00961 205 VPEM--KGQVYIAE-GYADEEAVEKLYEIGKKARGNAFKMPANLIGPVCDMCSAVT 257 (342)
T ss_pred CCCC--CCceeccc-ccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHHHHH
Confidence 222 23332222 34589999999999999997 56677665555544444333
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00088 Score=64.60 Aligned_cols=94 Identities=17% Similarity=0.178 Sum_probs=62.4
Q ss_pred ccCCCcEEEEcCChhhHHHHHHHHh-----------hc--HHHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH-
Q psy6714 129 RWNRSDKQIAGTTERGPGALIASLN-----------IV--SKATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL- 193 (303)
Q Consensus 129 ~~~~mkIgIIGlG~MG~~~La~al~-----------r~--~e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL- 193 (303)
.+..+++||||+|.||. .++..++ +. .+.....|+.. .+..+++++||+|++++| ......++
T Consensus 142 ~L~gktvGIiG~G~IG~-~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~ 219 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGM-ALAQRAHFGFNMPILYNARRHHKEAEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLFG 219 (323)
T ss_pred CCCCCEEEEEcccHHHH-HHHHHHHhcCCCEEEEECCCCchhhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccC
Confidence 35678999999999999 4554322 11 11123445554 478899999999999998 44455555
Q ss_pred HhhccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 194 NDIKPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
.+....++++.++|.+.=| |+.+.|.+.|..
T Consensus 220 ~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~ 252 (323)
T PRK15409 220 AEQFAKMKSSAIFINAGRGPVVDENALIAALQK 252 (323)
T ss_pred HHHHhcCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 2344457789999987733 344667776653
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0011 Score=61.74 Aligned_cols=85 Identities=20% Similarity=0.255 Sum_probs=54.8
Q ss_pred CCcEEEEcC-ChhhHHHHHHHHhhcH------------HHH---hhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHh
Q psy6714 132 RSDKQIAGT-TERGPGALIASLNIVS------------KAT---GTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 132 ~mkIgIIGl-G~MG~~~La~al~r~~------------e~l---~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~e 195 (303)
+|||+|||+ |.||. .++..+.... +.. ...|+....+..++++++|+||.+++|....+++..
T Consensus 1 ~mkV~IiG~~G~mG~-~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~~~~~~~~ 79 (257)
T PRK00048 1 MIKVAVAGASGRMGR-ELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEATLENLEF 79 (257)
T ss_pred CcEEEEECCCCHHHH-HHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHHHHHHHHH
Confidence 589999998 99999 4554432211 111 123455567777778889999999999988888766
Q ss_pred hccccCCCCEEEEecCCCcHHHHHh
Q psy6714 196 IKPVFNESNLLISVAGGVPIKNMEQ 220 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~ie~L~~ 220 (303)
... .++-||.-..|.+.+.+++
T Consensus 80 al~---~G~~vvigttG~s~~~~~~ 101 (257)
T PRK00048 80 ALE---HGKPLVIGTTGFTEEQLAE 101 (257)
T ss_pred HHH---cCCCEEEECCCCCHHHHHH
Confidence 543 3443343345777655443
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00088 Score=64.78 Aligned_cols=94 Identities=17% Similarity=0.155 Sum_probs=63.1
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH----------hhc-H-HHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHHH-h
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL----------NIV-S-KATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVALN-D 195 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al----------~r~-~-e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL~-e 195 (303)
+..+++||||+|.||. .++..+ +.. . +.....|+....+..+++.+||+|++.+| -.....++. +
T Consensus 140 l~gkTvGIiG~G~IG~-~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~ 218 (324)
T COG0111 140 LAGKTVGIIGLGRIGR-AVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAE 218 (324)
T ss_pred ccCCEEEEECCCHHHH-HHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHH
Confidence 3467999999999999 455432 221 1 12223455555778999999999999998 555666662 2
Q ss_pred hccccCCCCEEEEecCCC--cHHHHHhhCCC
Q psy6714 196 IKPVFNESNLLISVAGGV--PIKNMEQALPK 224 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV--~ie~L~~~l~~ 224 (303)
....++++.++|.+.=|- +.+.|.+.+..
T Consensus 219 ~~a~MK~gailIN~aRG~vVde~aL~~AL~~ 249 (324)
T COG0111 219 ELAKMKPGAILINAARGGVVDEDALLAALDS 249 (324)
T ss_pred HHhhCCCCeEEEECCCcceecHHHHHHHHHc
Confidence 333577889999887443 44567776654
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00094 Score=64.34 Aligned_cols=143 Identities=14% Similarity=0.144 Sum_probs=80.7
Q ss_pred CCCcEEEEc-CChhhHHHHHHHHhhcHHH-H----hhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCC
Q psy6714 131 NRSDKQIAG-TTERGPGALIASLNIVSKA-T----GTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESN 204 (303)
Q Consensus 131 ~~mkIgIIG-lG~MG~~~La~al~r~~e~-l----~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~ 204 (303)
+++||+||| +|..|. .|...+...++- + .+.+... .+..+.++++|+||+|+|.....+++.++.. .++
T Consensus 1 ~~~~VaIvGAtGy~G~-eLlrlL~~hp~~~l~~~~s~~~~~~-~~~~~~~~~~DvvFlalp~~~s~~~~~~~~~---~g~ 75 (313)
T PRK11863 1 MKPKVFIDGEAGTTGL-QIRERLAGRSDIELLSIPEAKRKDA-AARRELLNAADVAILCLPDDAAREAVALIDN---PAT 75 (313)
T ss_pred CCcEEEEECCCCHHHH-HHHHHHhcCCCeEEEEEecCCCCcc-cCchhhhcCCCEEEECCCHHHHHHHHHHHHh---CCC
Confidence 468999999 899998 576665544320 0 1111111 2334456789999999999888888877643 577
Q ss_pred EEEEecCCCcHHHHHhhCCCCCceEEEecCcHH----hhhCCcEEEEeCCCCCHHH-HHHHHHHHHhcCCcEEcCCCCch
Q psy6714 205 LLISVAGGVPIKNMEQALPKNSRIIRAMPNTPA----LVRQGASVFVRGSSASDQD-AQTVINLFKSVGTCEEVPEYLLD 279 (303)
Q Consensus 205 IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~----~v~~G~til~~g~~~~~e~-~e~V~~Lfs~iG~~v~vdE~~~D 279 (303)
.||++.+..-.+ ..++..+|.+.. .+... .++. .+.+.... .-.+..|++. |..-..-.-.+|
T Consensus 76 ~VIDlSadfRl~---------~~~~yglPEvn~~~~~~i~~~-~~Ia-nPgC~~Ta~~laL~PL~~~-~li~~~~~i~i~ 143 (313)
T PRK11863 76 RVIDASTAHRTA---------PGWVYGFPELAPGQRERIAAA-KRVA-NPGCYPTGAIALLRPLVDA-GLLPADYPVSIN 143 (313)
T ss_pred EEEECChhhhcC---------CCCeEEcCccCHHHHHHhhcC-CeEE-cCCcHHHHHHHHHHHHHHc-CCcccCceEEEE
Confidence 888776533211 146777777632 12222 2222 23334333 3345666653 432111123466
Q ss_pred hhhhhccchHH
Q psy6714 280 GITGLSGSGPA 290 (303)
Q Consensus 280 a~tAlsGsgPA 290 (303)
..+++||.|-.
T Consensus 144 a~SG~SGAG~~ 154 (313)
T PRK11863 144 AVSGYSGGGKA 154 (313)
T ss_pred EccccccCCcc
Confidence 77777776643
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00065 Score=55.85 Aligned_cols=76 Identities=18% Similarity=0.176 Sum_probs=48.9
Q ss_pred cEEEEc-CChhhHHHHHHHHhhcH---------------HHHhh-----CCC---eEecChHHhhcCCCEEEEeeCCccH
Q psy6714 134 DKQIAG-TTERGPGALIASLNIVS---------------KATGT-----MGA---KITFDNKEVTLNSEVIILAVKPHIV 189 (303)
Q Consensus 134 kIgIIG-lG~MG~~~La~al~r~~---------------e~l~e-----~Gv---~v~~d~~eav~~ADIVILAVpP~~v 189 (303)
||+||| +|.+|.. |...+.... ..+.. .+. .+.....+.+.++|+||+|++....
T Consensus 1 rV~IvGAtG~vG~~-l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRE-LLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGAS 79 (121)
T ss_dssp EEEEESTTSHHHHH-HHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHH
T ss_pred CEEEECCCCHHHHH-HHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHH
Confidence 699999 9999994 554432211 01111 112 2333344556899999999999988
Q ss_pred HHHHHhhccccCCCCEEEEecCCC
Q psy6714 190 PVALNDIKPVFNESNLLISVAGGV 213 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSiaaGV 213 (303)
.++...+. ..+..||+..+..
T Consensus 80 ~~~~~~~~---~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 80 KELAPKLL---KAGIKVIDLSGDF 100 (121)
T ss_dssp HHHHHHHH---HTTSEEEESSSTT
T ss_pred HHHHHHHh---hCCcEEEeCCHHH
Confidence 88887763 3677888876644
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00088 Score=64.34 Aligned_cols=87 Identities=17% Similarity=0.219 Sum_probs=58.3
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcHHHHhhCCCeE-------------ecChHHhhcCCCEEEEeeC-CccHHHHH-H
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIVSKATGTMGAKI-------------TFDNKEVTLNSEVIILAVK-PHIVPVAL-N 194 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~~e~l~e~Gv~v-------------~~d~~eav~~ADIVILAVp-P~~v~~VL-~ 194 (303)
+..++|||||+|.||. .++..+ +.+|.++ ..+..+++++||+|++++| -.....++ +
T Consensus 146 l~gktvgIiG~G~IG~-~vA~~l-------~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~ 217 (317)
T PRK06487 146 LEGKTLGLLGHGELGG-AVARLA-------EAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGA 217 (317)
T ss_pred cCCCEEEEECCCHHHH-HHHHHH-------hhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCH
Confidence 4578999999999999 455432 2222221 2356889999999999998 34455555 2
Q ss_pred hhccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 195 DIKPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
+....++++.++|.+.=| |+.+.|.+.|.+
T Consensus 218 ~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~ 249 (317)
T PRK06487 218 RELALMKPGALLINTARGGLVDEQALADALRS 249 (317)
T ss_pred HHHhcCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 334457789999988733 344567776653
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0013 Score=63.08 Aligned_cols=66 Identities=14% Similarity=0.238 Sum_probs=46.6
Q ss_pred cCCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEeeC-CccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~ 201 (303)
+..++|+|||.| .||.+|..+. .+.|+++ + .++.+++++||+||+||. +..+..+. ++
T Consensus 157 l~Gk~V~vIG~s~ivG~PmA~~L--------~~~gatVtv~~~~t~~l~e~~~~ADIVIsavg~~~~v~~~~------ik 222 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPMAALL--------LQAHCSVTVVHSRSTDAKALCRQADIVVAAVGRPRLIDADW------LK 222 (301)
T ss_pred CCCCEEEEECCCCccHHHHHHHH--------HHCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhcccHhh------cc
Confidence 346789999996 9999743322 2334432 2 357888999999999995 66555543 56
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 223 ~GaiVIDv 230 (301)
T PRK14194 223 PGAVVIDV 230 (301)
T ss_pred CCcEEEEe
Confidence 88888865
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0012 Score=61.83 Aligned_cols=65 Identities=9% Similarity=0.086 Sum_probs=44.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcH--------------HHHh---hCCCeEecChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVS--------------KATG---TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~--------------e~l~---e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
||||||||+|.||. .++..+.... +... ..++.++.|..++..+.|+|+.|+++....++..
T Consensus 1 m~rVgIiG~G~iG~-~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~~e~~~ 79 (265)
T PRK13303 1 MMKVAMIGFGAIGA-AVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAALKEHVV 79 (265)
T ss_pred CcEEEEECCCHHHH-HHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHHHHHHH
Confidence 68999999999999 4555432211 1111 1256667777766456999999999888877776
Q ss_pred hhc
Q psy6714 195 DIK 197 (303)
Q Consensus 195 eI~ 197 (303)
.+.
T Consensus 80 ~aL 82 (265)
T PRK13303 80 PIL 82 (265)
T ss_pred HHH
Confidence 654
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0011 Score=65.86 Aligned_cols=94 Identities=18% Similarity=0.170 Sum_probs=61.3
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhc---------HHHHhhCCCeEecChHHhhcCCCEEEEeeCC-ccHHHHH-Hhhcc
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIV---------SKATGTMGAKITFDNKEVTLNSEVIILAVKP-HIVPVAL-NDIKP 198 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~---------~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL-~eI~~ 198 (303)
+..++|||||+|.||. .++..++.. .......++....+..+++++||+|++++|- .....++ ++...
T Consensus 149 L~gktvGIiG~G~IG~-~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~ 227 (409)
T PRK11790 149 VRGKTLGIVGYGHIGT-QLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELA 227 (409)
T ss_pred CCCCEEEEECCCHHHH-HHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHh
Confidence 5578999999999999 455442211 0111112344445789999999999999984 4455555 23444
Q ss_pred ccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 199 VFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 199 ~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
.++++.++|.+.=| ++.+.|.+.|..
T Consensus 228 ~mk~ga~lIN~aRG~~vde~aL~~aL~~ 255 (409)
T PRK11790 228 LMKPGAILINASRGTVVDIDALADALKS 255 (409)
T ss_pred cCCCCeEEEECCCCcccCHHHHHHHHHc
Confidence 57789999987733 345667666653
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0014 Score=61.42 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=54.4
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhcH-------------HH----Hh------hCCCeEecChHHhhcCCCEEEEeeCCc
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIVS-------------KA----TG------TMGAKITFDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~~-------------e~----l~------e~Gv~v~~d~~eav~~ADIVILAVpP~ 187 (303)
||||+|+| +|.||. .++..+.... +. +. ..|+.++.+.+++...+|+||.+++|.
T Consensus 1 ~ikV~IiGa~G~MG~-~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p~ 79 (266)
T TIGR00036 1 TIKVAVAGAAGRMGR-ELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTPE 79 (266)
T ss_pred CeEEEEECCCCHHHH-HHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCChH
Confidence 47999999 699999 4554422110 01 10 135666677777655799999999999
Q ss_pred cHHHHHHhhccccCCCC-EEEEecCCCcHHHHHh
Q psy6714 188 IVPVALNDIKPVFNESN-LLISVAGGVPIKNMEQ 220 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~-IVVSiaaGV~ie~L~~ 220 (303)
...+++..... .++ +|+.. .|.+.+.+++
T Consensus 80 ~~~~~~~~al~---~g~~vVigt-tg~~~e~~~~ 109 (266)
T TIGR00036 80 GVLNHLKFALE---HGVRLVVGT-TGFSEEDKQE 109 (266)
T ss_pred HHHHHHHHHHH---CCCCEEEEC-CCCCHHHHHH
Confidence 98888876543 333 44434 4787665544
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0037 Score=59.28 Aligned_cols=100 Identities=15% Similarity=0.230 Sum_probs=58.9
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCCCeEe--cChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------IVSK---ATGTMGAKIT--FDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~Gv~v~--~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
+...+++|||+|.||. +++..+. +..+ .+.+.|.... .+..+.++++|+||.++|...+. .
T Consensus 149 l~gk~v~IiG~G~iG~-avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~---~ 224 (287)
T TIGR02853 149 IHGSNVMVLGFGRTGM-TIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLT---A 224 (287)
T ss_pred CCCCEEEEEcChHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhC---H
Confidence 3457899999999999 4655432 2222 2334566533 24467788999999999765332 2
Q ss_pred hhccccCCCCEEEEec---CCCcHHHHHhhCCCCCceEEEecCcHH
Q psy6714 195 DIKPVFNESNLLISVA---GGVPIKNMEQALPKNSRIIRAMPNTPA 237 (303)
Q Consensus 195 eI~~~L~~g~IVVSia---aGV~ie~L~~~l~~~~~VVr~mPn~p~ 237 (303)
++...++++.+||.+. ++++.+ ..+..+ .+ ....|+.|.
T Consensus 225 ~~l~~~k~~aliIDlas~Pg~tdf~-~Ak~~G--~~-a~~~~glPg 266 (287)
T TIGR02853 225 DVLSKLPKHAVIIDLASKPGGTDFE-YAKKRG--IK-ALLAPGLPG 266 (287)
T ss_pred HHHhcCCCCeEEEEeCcCCCCCCHH-HHHHCC--CE-EEEeCCCCc
Confidence 2333456788888665 355553 333333 12 233466664
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.007 Score=57.62 Aligned_cols=126 Identities=16% Similarity=0.261 Sum_probs=85.9
Q ss_pred hCCCeEecChHHhhcCCCEEEEeeCCcc-HHHHHHhhccccCCCCEEEEecCCCcHHHHHhhC---C-CCCceEEEecCc
Q psy6714 161 TMGAKITFDNKEVTLNSEVIILAVKPHI-VPVALNDIKPVFNESNLLISVAGGVPIKNMEQAL---P-KNSRIIRAMPNT 235 (303)
Q Consensus 161 e~Gv~v~~d~~eav~~ADIVILAVpP~~-v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l---~-~~~~VVr~mPn~ 235 (303)
+.|+++++|..|+++++|++|+=+|--. -.++++++.++++.|.+|-+++ -++.-.|...| + .+..|..+||..
T Consensus 124 daGvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tC-TIpt~~ly~ilE~l~R~DvgVsS~HPaa 202 (340)
T TIGR01723 124 DLGLKVTTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHAC-TIPTTKFAKIFEDLGREDLNVTSYHPGC 202 (340)
T ss_pred HcCceEecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccc-cCChHHHHHHHHhhCcccCCeeccCCCC
Confidence 5689999999999999999999998554 5788899999998888766544 45554444443 2 344566666542
Q ss_pred -HHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCC-cEEcCCCCchhhhhhccchHH
Q psy6714 236 -PALVRQGASVFVRGSSASDQDAQTVINLFKSVGT-CEEVPEYLLDGITGLSGSGPA 290 (303)
Q Consensus 236 -p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~-~v~vdE~~~Da~tAlsGsgPA 290 (303)
|..- ++..++ -.-.++++.+.+.+|.++.|+ .+.++.+....+..+++..-|
T Consensus 203 VPgt~-~q~Yi~--egyAtEEqI~klveL~~sa~k~ay~~PA~LvspV~DMgS~VTA 256 (340)
T TIGR01723 203 VPEMK-GQVYIA--EGYASEEAVNKLYELGKKARGKAFKMPANLLGPVCDMCSAVTA 256 (340)
T ss_pred CCCCC-CceEee--cccCCHHHHHHHHHHHHHhCCCeeecchhhccchhhHHHHHHH
Confidence 3222 233332 234589999999999999997 566776665555544443333
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0016 Score=53.21 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=31.3
Q ss_pred cCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCCC
Q psy6714 175 LNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGV 213 (303)
Q Consensus 175 ~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV 213 (303)
.++|+||+|+++....+++..+...+.+|++||++.+..
T Consensus 64 ~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 64 LAVDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred cCCCEEEEcCCcHHHHHHHHHHHhhhcCCCEEEECCccc
Confidence 489999999999999998776555567899988776543
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0019 Score=62.20 Aligned_cols=73 Identities=8% Similarity=0.110 Sum_probs=46.8
Q ss_pred CCcEEEEcCChhhHHHHHHH------------HhhcHH-------HHhhCC--CeEecChHHhhcCCCEEEEeeCCccHH
Q psy6714 132 RSDKQIAGTTERGPGALIAS------------LNIVSK-------ATGTMG--AKITFDNKEVTLNSEVIILAVKPHIVP 190 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a------------l~r~~e-------~l~e~G--v~v~~d~~eav~~ADIVILAVpP~~v~ 190 (303)
-.++||||+|.||... +.. +++..+ .+.++| +.++.+.++++++||||++|++...
T Consensus 128 ~~~lgiiG~G~qA~~~-l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~-- 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQ-LEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK-- 204 (325)
T ss_pred CCEEEEECCCHHHHHH-HHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC--
Confidence 3579999999999832 222 122222 233456 4567889999999999999997542
Q ss_pred HHHHhhccccCCCCEEEEe
Q psy6714 191 VALNDIKPVFNESNLLISV 209 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSi 209 (303)
.++. ...+++|..|+++
T Consensus 205 P~~~--~~~l~~g~~v~~v 221 (325)
T TIGR02371 205 PVVK--ADWVSEGTHINAI 221 (325)
T ss_pred cEec--HHHcCCCCEEEec
Confidence 2321 1235678776544
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0027 Score=62.79 Aligned_cols=95 Identities=14% Similarity=0.163 Sum_probs=59.8
Q ss_pred ccCCCcEEEEcCChhhHHHHHHHH-----------hhcH-HHH----hhCC------------CeEecChHHhhcCCCEE
Q psy6714 129 RWNRSDKQIAGTTERGPGALIASL-----------NIVS-KAT----GTMG------------AKITFDNKEVTLNSEVI 180 (303)
Q Consensus 129 ~~~~mkIgIIGlG~MG~~~La~al-----------~r~~-e~l----~e~G------------v~v~~d~~eav~~ADIV 180 (303)
.+..++|||||+|.||. .++..+ +... ... ..+| +....+..+++++||+|
T Consensus 162 ~L~gktvGIiG~G~IG~-~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV 240 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGS-AYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI 240 (386)
T ss_pred CCCCCEEEEECCCHHHH-HHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEE
Confidence 35678999999999999 454332 1111 111 1122 12234788999999999
Q ss_pred EEeeC-CccHHHHH-HhhccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 181 ILAVK-PHIVPVAL-NDIKPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 181 ILAVp-P~~v~~VL-~eI~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
++++| ......++ .+....++++.++|.+.=| |+.+.|.+.|..
T Consensus 241 ~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred EEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 99998 44455555 2344457789999987733 344567666643
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0026 Score=60.85 Aligned_cols=73 Identities=14% Similarity=0.087 Sum_probs=45.9
Q ss_pred CCCcEEEEcCChhhHHHHHH-H----------HhhcHHH-------HhhCC--CeEecChHHhhcCCCEEEEeeCCccHH
Q psy6714 131 NRSDKQIAGTTERGPGALIA-S----------LNIVSKA-------TGTMG--AKITFDNKEVTLNSEVIILAVKPHIVP 190 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~-a----------l~r~~e~-------l~e~G--v~v~~d~~eav~~ADIVILAVpP~~v~ 190 (303)
...+|+|||+|.||..++.. . +++..++ +.+.| +.+..+.++++++||||+.|++.. .
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--~ 201 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--E 201 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC--C
Confidence 35689999999999954331 1 1222222 22235 556678888999999998888755 3
Q ss_pred HHHHhhccccCCCCEEE
Q psy6714 191 VALNDIKPVFNESNLLI 207 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVV 207 (303)
.++.. ..++++++|.
T Consensus 202 pvl~~--~~l~~g~~i~ 216 (314)
T PRK06141 202 PLVRG--EWLKPGTHLD 216 (314)
T ss_pred CEecH--HHcCCCCEEE
Confidence 44321 3466787544
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0042 Score=59.33 Aligned_cols=83 Identities=14% Similarity=0.120 Sum_probs=51.4
Q ss_pred CCCcEEEEcCChhhHHHHHHHH-----------hhcHHH----HhhCCCeEe--cChHHhhcCCCEEEEeeCCccHHHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASL-----------NIVSKA----TGTMGAKIT--FDNKEVTLNSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al-----------~r~~e~----l~e~Gv~v~--~d~~eav~~ADIVILAVpP~~v~~VL 193 (303)
..++|+|||+|.||. .++..+ ++..++ ..++|..+. .+..+.+.++|+||.|++.....+++
T Consensus 177 ~~~~V~ViGaG~iG~-~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~ 255 (311)
T cd05213 177 KGKKVLVIGAGEMGE-LAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHYAKIV 255 (311)
T ss_pred cCCEEEEECcHHHHH-HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCchHHHH
Confidence 478999999999998 444432 122222 235566432 34566788999999999866665555
Q ss_pred Hhhcccc-CCCCEEEEecCCCc
Q psy6714 194 NDIKPVF-NESNLLISVAGGVP 214 (303)
Q Consensus 194 ~eI~~~L-~~g~IVVSiaaGV~ 214 (303)
..+.... ..+.+||.+..+-+
T Consensus 256 ~~~~~~~~~~~~~viDlavPrd 277 (311)
T cd05213 256 ERAMKKRSGKPRLIVDLAVPRD 277 (311)
T ss_pred HHHHhhCCCCCeEEEEeCCCCC
Confidence 4432222 24567777754433
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0038 Score=60.44 Aligned_cols=92 Identities=20% Similarity=0.210 Sum_probs=60.3
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------hc--HHHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH-Hh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------IV--SKATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL-ND 195 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r~--~e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL-~e 195 (303)
...+++||||+|.||. .+++.++ +. .+..++.++.... ..+++++||+|+|.+| -.....++ .+
T Consensus 144 l~gktvGIiG~GrIG~-avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~~ 221 (324)
T COG1052 144 LRGKTLGIIGLGRIGQ-AVARRLKGFGMKVLYYDRSPNPEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLINAE 221 (324)
T ss_pred CCCCEEEEECCCHHHH-HHHHHHhcCCCEEEEECCCCChHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhcCHH
Confidence 3478999999999999 4665432 22 1222344455444 8899999999999998 44455555 23
Q ss_pred hccccCCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 196 IKPVFNESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
....++++.++|.+.=| |+.+.|.+.|.
T Consensus 222 ~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~ 251 (324)
T COG1052 222 ELAKMKPGAILVNTARGGLVDEQALIDALK 251 (324)
T ss_pred HHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 33457788899977633 34455666554
|
|
| >KOG0069|consensus | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0053 Score=59.73 Aligned_cols=92 Identities=18% Similarity=0.229 Sum_probs=62.2
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcH-------------HHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH-Hh
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNIVS-------------KATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL-ND 195 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r~~-------------e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL-~e 195 (303)
..++|||+|+|.||. .++..++... +...+.+.. ..|..+.+.++|+|++|+| -.....++ ++
T Consensus 161 ~gK~vgilG~G~IG~-~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~ 238 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGK-AIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLINKK 238 (336)
T ss_pred cCCEEEEecCcHHHH-HHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHhhHH
Confidence 457999999999999 4554432211 112223333 3577788999999999998 55566666 45
Q ss_pred hccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 196 IKPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
+...++++.+||.+.=| ++.+.+.+.+.+
T Consensus 239 ~~~~mk~g~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 239 FIEKMKDGAVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred HHHhcCCCeEEEeccccccccHHHHHHHHhc
Confidence 66678889999988733 344667777764
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0058 Score=57.77 Aligned_cols=81 Identities=26% Similarity=0.277 Sum_probs=48.4
Q ss_pred CCcEEEEcCChhhHHHHHHHH-h----------hcHHH-------Hh----hC--CCeEe--cChHHhhcCCCEEEEeeC
Q psy6714 132 RSDKQIAGTTERGPGALIASL-N----------IVSKA-------TG----TM--GAKIT--FDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-~----------r~~e~-------l~----e~--Gv~v~--~d~~eav~~ADIVILAVp 185 (303)
||||+|||+|.||.+ ++..+ . ...++ +. .. ...+. .+. +.+++||+||+++.
T Consensus 2 ~~KI~VIGaG~vG~~-ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 2 RKKISIIGAGNVGAT-LAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred CCEEEEECCCHHHHH-HHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 689999999999984 43321 1 11110 10 11 12332 344 56899999999973
Q ss_pred --C--------------ccHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 --P--------------HIVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 --P--------------~~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
. ..+.++++++.++. ++.++|-..+++++
T Consensus 80 ~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~d~ 124 (307)
T PRK06223 80 VPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPVDA 124 (307)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHH
Confidence 2 22556667777665 45566667777765
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.034 Score=53.46 Aligned_cols=73 Identities=4% Similarity=-0.010 Sum_probs=46.7
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcHHHHh-hC-CCeEecChHHhhc--CCCEEEEeeCCccHHHHHHh
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVSKATG-TM-GAKITFDNKEVTL--NSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~e~l~-e~-Gv~v~~d~~eav~--~ADIVILAVpP~~v~~VL~e 195 (303)
++||||||+|.||....+..+ +...+++. ++ +.....|..++++ +.|+|++|+|+..-.+++..
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~~ 83 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAKA 83 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH
Confidence 479999999999973222221 12223333 33 4556788888885 57999999997666666544
Q ss_pred hccccCCCCEEE
Q psy6714 196 IKPVFNESNLLI 207 (303)
Q Consensus 196 I~~~L~~g~IVV 207 (303)
.. ..|+-|+
T Consensus 84 al---~aGkhVl 92 (346)
T PRK11579 84 AL---EAGKHVV 92 (346)
T ss_pred HH---HCCCeEE
Confidence 33 3455555
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0034 Score=58.10 Aligned_cols=77 Identities=17% Similarity=0.216 Sum_probs=54.7
Q ss_pred CcEEEEcCChhhHHHHHHHH-------------hhcHHHHh----hCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHh
Q psy6714 133 SDKQIAGTTERGPGALIASL-------------NIVSKATG----TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al-------------~r~~e~l~----e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~e 195 (303)
|+|||||+|.||.. +.... ++..++++ ..+.....+..|.+.+.|+|+=|-.++.+++.+.+
T Consensus 1 l~vgiVGcGaIG~~-l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~~ 79 (255)
T COG1712 1 LKVGIVGCGAIGKF-LLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPEAVREYVPK 79 (255)
T ss_pred CeEEEEeccHHHHH-HHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHHHHHHHhHH
Confidence 68999999999994 55443 23334443 33444557788888999999999999999999877
Q ss_pred hccccCCCCEEEEecC
Q psy6714 196 IKPVFNESNLLISVAG 211 (303)
Q Consensus 196 I~~~L~~g~IVVSiaa 211 (303)
+... ..+.+|+|+-+
T Consensus 80 ~L~~-g~d~iV~SVGA 94 (255)
T COG1712 80 ILKA-GIDVIVMSVGA 94 (255)
T ss_pred HHhc-CCCEEEEechh
Confidence 6532 24566777643
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.015 Score=56.47 Aligned_cols=149 Identities=16% Similarity=0.232 Sum_probs=83.1
Q ss_pred CcEEEEcC-ChhhHHHHHHHHhhcH---------------HHHhh-C----C---CeEe-cChHHhhcCCCEEEEeeCCc
Q psy6714 133 SDKQIAGT-TERGPGALIASLNIVS---------------KATGT-M----G---AKIT-FDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 133 mkIgIIGl-G~MG~~~La~al~r~~---------------e~l~e-~----G---v~v~-~d~~eav~~ADIVILAVpP~ 187 (303)
|||+|||. |.+|. .++..+.... +.+.+ + + ..+. .+..++++++|+||+|+|..
T Consensus 1 ~kVaIiGATG~vG~-ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~ 79 (346)
T TIGR01850 1 IKVAIVGASGYTGG-ELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG 79 (346)
T ss_pred CEEEEECCCCHHHH-HHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch
Confidence 68999996 99999 4554432111 01111 1 1 1121 14455556899999999999
Q ss_pred cHHHHHHhhccccCCCCEEEEecCCCcH---HHHHhhCCCC-------CceEEEecCcHHhhhCCcEEEEeCCCCCHHHH
Q psy6714 188 IVPVALNDIKPVFNESNLLISVAGGVPI---KNMEQALPKN-------SRIIRAMPNTPALVRQGASVFVRGSSASDQDA 257 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVVSiaaGV~i---e~L~~~l~~~-------~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~ 257 (303)
...+++..+.. .|+.||+..+..-. +..+++.+.. ..++..+|....+--.+..+ +..+++.....
T Consensus 80 ~s~~~~~~~~~---~G~~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n~~~i~~~~i-ianPgC~~t~~ 155 (346)
T TIGR01850 80 VSAELAPELLA---AGVKVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELHREEIKGARL-IANPGCYPTAT 155 (346)
T ss_pred HHHHHHHHHHh---CCCEEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccCHHHhCCCcE-EEcCCcHHHHH
Confidence 88888877643 57788887765533 2344444311 14677777764332233333 33344554443
Q ss_pred -HHHHHHHHhcCCcEEcCCCCchhhhhhccch
Q psy6714 258 -QTVINLFKSVGTCEEVPEYLLDGITGLSGSG 288 (303)
Q Consensus 258 -e~V~~Lfs~iG~~v~vdE~~~Da~tAlsGsg 288 (303)
-.+..|++.-+.. .+.-..|...++||.|
T Consensus 156 ~l~L~PL~~~~~i~--~~~i~v~~~sgvSGaG 185 (346)
T TIGR01850 156 LLALAPLLKEGLID--PTSIIVDAKSGVSGAG 185 (346)
T ss_pred HHHHHHHHHcCCCC--CCcEEEEEEEECcccC
Confidence 3466666543221 1112466667777766
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0045 Score=59.16 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=49.4
Q ss_pred CCcEEEEcCChhhHHHHHHHH-h----------hcH--H--H-H---h-----hCC--CeEecChHHhhcCCCEEEEeeC
Q psy6714 132 RSDKQIAGTTERGPGALIASL-N----------IVS--K--A-T---G-----TMG--AKITFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-~----------r~~--e--~-l---~-----e~G--v~v~~d~~eav~~ADIVILAVp 185 (303)
+|||+|||+|.||.+ ++..+ . ... . . + . ... +..+.|..+ +++||+||+++.
T Consensus 1 ~~KV~VIGaG~vG~~-iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag 78 (305)
T TIGR01763 1 RKKISVIGAGFVGAT-TAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAG 78 (305)
T ss_pred CCEEEEECcCHHHHH-HHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCC
Confidence 479999999999984 33221 1 000 0 1 1 0 111 223356555 789999999995
Q ss_pred -Cc---------------cHHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 186 -PH---------------IVPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 186 -P~---------------~v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
|. .+.+++++|.++. ++.+||...+++++-
T Consensus 79 ~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~di~ 124 (305)
T TIGR01763 79 LPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPLDAM 124 (305)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHH
Confidence 22 2345556677665 566777788888763
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0055 Score=59.06 Aligned_cols=143 Identities=13% Similarity=0.141 Sum_probs=79.5
Q ss_pred CcEEEEc-CChhhHHHHHHHHhhcHHH-Hh---hC-CCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEE
Q psy6714 133 SDKQIAG-TTERGPGALIASLNIVSKA-TG---TM-GAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLL 206 (303)
Q Consensus 133 mkIgIIG-lG~MG~~~La~al~r~~e~-l~---e~-Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IV 206 (303)
-||+|+| .|-.|. .|.+.+....+- +. .. .+. ..+..++++++|+||+|+|.....+++..+. ..+..|
T Consensus 2 ~~v~IvGasGy~G~-el~rlL~~HP~~el~~l~s~~~~~-~~~~~~~~~~~D~vFlalp~~~s~~~~~~~~---~~g~~V 76 (310)
T TIGR01851 2 PKVFIDGEAGTTGL-QIRERLSGRDDIELLSIAPDRRKD-AAERAKLLNAADVAILCLPDDAAREAVSLVD---NPNTCI 76 (310)
T ss_pred CeEEEECCCChhHH-HHHHHHhCCCCeEEEEEecccccC-cCCHhHhhcCCCEEEECCCHHHHHHHHHHHH---hCCCEE
Confidence 3799998 788888 566655443321 10 00 011 1234456678999999999988888877654 257778
Q ss_pred EEecCCCcHHHHHhhCCCCCceEEEecCcHHhhh---CCcEEEEeCCCCCHHHH-HHHHHHHHhcCCcEEcCCCCchhhh
Q psy6714 207 ISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVR---QGASVFVRGSSASDQDA-QTVINLFKSVGTCEEVPEYLLDGIT 282 (303)
Q Consensus 207 VSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~---~G~til~~g~~~~~e~~-e~V~~Lfs~iG~~v~vdE~~~Da~t 282 (303)
|++.+..-.+ ..++..+|....... .+..++. .+.+..... -.+..|++. |..-..-.--+|..+
T Consensus 77 IDlSadfRl~---------~~~~yglPEln~~~~~~i~~a~lIA-nPgC~aTa~~LaL~PL~~~-~li~~~~~~~~~a~S 145 (310)
T TIGR01851 77 IDASTAYRTA---------DDWAYGFPELAPGQREKIRNSKRIA-NPGCYPTGFIALMRPLVEA-GILPADFPITINAVS 145 (310)
T ss_pred EECChHHhCC---------CCCeEEccccCHHHHHhhccCCEEE-CCCCHHHHHHHHHHHHHHc-CCccccceEEEEecc
Confidence 8775532111 257778887743222 1222323 334444433 345566553 432111124467777
Q ss_pred hhccchHHH
Q psy6714 283 GLSGSGPAY 291 (303)
Q Consensus 283 AlsGsgPAf 291 (303)
.+||.|=+-
T Consensus 146 G~SGAGr~~ 154 (310)
T TIGR01851 146 GYSGGGKAM 154 (310)
T ss_pred ccCccChhh
Confidence 777766443
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0055 Score=58.70 Aligned_cols=66 Identities=18% Similarity=0.208 Sum_probs=46.2
Q ss_pred cCCCcEEEEc-CChhhHHHHHHHHhhcHHHHhhCCCe--Eec----ChHHhhcCCCEEEEeeC-CccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAG-TTERGPGALIASLNIVSKATGTMGAK--ITF----DNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIG-lG~MG~~~La~al~r~~e~l~e~Gv~--v~~----d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~ 201 (303)
+..++|+||| .|.||.+|..+. .+.|+. ++. +..+++++|||||.||. +..+..++ ++
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L--------~~~g~tVtv~~~rT~~l~e~~~~ADIVIsavg~~~~v~~~~------lk 221 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLL--------LAANATVTIAHSRTRDLPAVCRRADILVAAVGRPEMVKGDW------IK 221 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHH--------HhCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhhcchhe------ec
Confidence 4468999999 999999743322 233443 332 56788999999999996 55444433 66
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 222 ~GavVIDv 229 (296)
T PRK14188 222 PGATVIDV 229 (296)
T ss_pred CCCEEEEc
Confidence 88888865
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0083 Score=57.18 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=46.6
Q ss_pred cCCCcEEEEcC-ChhhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEeeC-CccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGT-TERGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGl-G~MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~ 201 (303)
+..++|+|||. |.||.+|..+.+ +.|.++ +.+..+.+++||+||.|+. |..+.... ++
T Consensus 156 l~Gk~v~vIG~S~ivG~Pla~lL~--------~~gatVtv~~s~t~~l~~~~~~ADIVI~avg~~~~v~~~~------ik 221 (284)
T PRK14179 156 LEGKHAVVIGRSNIVGKPMAQLLL--------DKNATVTLTHSRTRNLAEVARKADILVVAIGRGHFVTKEF------VK 221 (284)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHH--------HCCCEEEEECCCCCCHHHHHhhCCEEEEecCccccCCHHH------cc
Confidence 44679999998 999997443332 233332 2356778999999999995 66665543 66
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 222 ~GavVIDv 229 (284)
T PRK14179 222 EGAVVIDV 229 (284)
T ss_pred CCcEEEEe
Confidence 88888865
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.021 Score=55.38 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=39.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHh------------hcH-HHHh-hCCCeEecChHHhhcCCCEEEEeeCCcc-HHHHHHh
Q psy6714 132 RSDKQIAGTTERGPGALIASLN------------IVS-KATG-TMGAKITFDNKEVTLNSEVIILAVKPHI-VPVALND 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~------------r~~-e~l~-e~Gv~v~~d~~eav~~ADIVILAVpP~~-v~~VL~e 195 (303)
++||+|||+|+||.. ++..+. +.. +.+. ..++....+..+++.+.|+|++|+|+.. ++.++..
T Consensus 3 kIRVgIVG~GnIGr~-~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~~~ 80 (324)
T TIGR01921 3 KIRAAIVGYGNLGRS-VEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATDIPEQAPY 80 (324)
T ss_pred CcEEEEEeecHHHHH-HHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccCHHHHHHH
Confidence 479999999999994 444322 121 2222 2344444566667788999999998544 4333333
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.022 Score=55.64 Aligned_cols=150 Identities=17% Similarity=0.221 Sum_probs=81.0
Q ss_pred CCCcEEEEc-CChhhHHHHHHHHhhcH--------------HHHh-----hCCC---eE-ecChHHh-hcCCCEEEEeeC
Q psy6714 131 NRSDKQIAG-TTERGPGALIASLNIVS--------------KATG-----TMGA---KI-TFDNKEV-TLNSEVIILAVK 185 (303)
Q Consensus 131 ~~mkIgIIG-lG~MG~~~La~al~r~~--------------e~l~-----e~Gv---~v-~~d~~ea-v~~ADIVILAVp 185 (303)
+|+||+||| .|--|. -|.+.+.... +.+. ..|. .. ..++.++ .++||+||||+|
T Consensus 1 ~~~kV~IvGasGYtG~-EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalP 79 (349)
T COG0002 1 MMIKVGIVGASGYTGL-ELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALP 79 (349)
T ss_pred CCceEEEEcCCCCcHH-HHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecC
Confidence 478999998 676676 5665532211 0111 1121 11 1233333 456999999999
Q ss_pred CccHHHHHHhhccccCCCCEEEEecCCCcH---HHHHhhCCCC-------CceEEEecCcHH-hhhCCcEEEEeCCCCCH
Q psy6714 186 PHIVPVALNDIKPVFNESNLLISVAGGVPI---KNMEQALPKN-------SRIIRAMPNTPA-LVRQGASVFVRGSSASD 254 (303)
Q Consensus 186 P~~v~~VL~eI~~~L~~g~IVVSiaaGV~i---e~L~~~l~~~-------~~VVr~mPn~p~-~v~~G~til~~g~~~~~ 254 (303)
...-.+++.++.. .+..||.+++..-+ +..+++.+.. ...+..+|-... ++.+..-+-.+| +-+
T Consensus 80 hg~s~~~v~~l~~---~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~~A~lIAnPG--Cyp 154 (349)
T COG0002 80 HGVSAELVPELLE---AGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHREKIRGAKLIANPG--CYP 154 (349)
T ss_pred chhHHHHHHHHHh---CCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCHHHHhcCCEeeCCC--chH
Confidence 9999888887653 45568888776544 3455555421 146667776553 333333333333 333
Q ss_pred H-HHHHHHHHHHhcCCcEEcCC-CCchhhhhhccch
Q psy6714 255 Q-DAQTVINLFKSVGTCEEVPE-YLLDGITGLSGSG 288 (303)
Q Consensus 255 e-~~e~V~~Lfs~iG~~v~vdE-~~~Da~tAlsGsg 288 (303)
. ..-.+..|++. |. +..+- -..|+.+.+||.|
T Consensus 155 Ta~iLal~PL~~~-~l-l~~~~~~ivdakSG~SGaG 188 (349)
T COG0002 155 TAAILALAPLVKA-GL-LDPDSPPIVDAKSGVSGAG 188 (349)
T ss_pred HHHHHHHHHHHHc-CC-cCCCCceEEEEeEecCcCC
Confidence 3 33445555543 21 11111 1366777776654
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.01 Score=56.98 Aligned_cols=74 Identities=12% Similarity=0.127 Sum_probs=48.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHh-----------hcH-----HHHhhCCCeEe-cChHHhhc-----CCCEEEEeeCCccH
Q psy6714 132 RSDKQIAGTTERGPGALIASLN-----------IVS-----KATGTMGAKIT-FDNKEVTL-----NSEVIILAVKPHIV 189 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~-----------r~~-----e~l~e~Gv~v~-~d~~eav~-----~ADIVILAVpP~~v 189 (303)
++||||||+|.||...+....+ .+. ...+++|+... .+.+++++ +.|+||+|++...-
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H 83 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH 83 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence 5789999999999942222211 111 22346788653 56667764 58999999998877
Q ss_pred HHHHHhhccccCCCCEEEE
Q psy6714 190 PVALNDIKPVFNESNLLIS 208 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVS 208 (303)
.+....+.+ .|+.||.
T Consensus 84 ~e~a~~a~e---aGk~VID 99 (302)
T PRK08300 84 VRHAAKLRE---AGIRAID 99 (302)
T ss_pred HHHHHHHHH---cCCeEEE
Confidence 777655543 4566663
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.015 Score=56.62 Aligned_cols=79 Identities=14% Similarity=0.158 Sum_probs=48.4
Q ss_pred CCCcEEEEc-CChhhHHHHHHHHhh--cHH----------H----HhhCC--CeEecChHHhhcCCCEEEEeeCCccHHH
Q psy6714 131 NRSDKQIAG-TTERGPGALIASLNI--VSK----------A----TGTMG--AKITFDNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 131 ~~mkIgIIG-lG~MG~~~La~al~r--~~e----------~----l~e~G--v~v~~d~~eav~~ADIVILAVpP~~v~~ 191 (303)
+||||+|+| +|.+|. .|...+.+ .+. . +...| +.+.....+.++++|+||+|+|+.....
T Consensus 3 ~~~~IaIvGATG~vG~-eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~~~~vD~vFla~p~~~s~~ 81 (336)
T PRK05671 3 QPLDIAVVGATGTVGE-ALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFDFSQVQLAFFAAGAAVSRS 81 (336)
T ss_pred CCCEEEEEccCCHHHH-HHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHHhcCCCEEEEcCCHHHHHH
Confidence 468999999 799999 46655432 110 0 11112 1221111223578999999999877777
Q ss_pred HHHhhccccCCCCEEEEecCCC
Q psy6714 192 ALNDIKPVFNESNLLISVAGGV 213 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSiaaGV 213 (303)
++..+.. .|..||+..+..
T Consensus 82 ~v~~~~~---~G~~VIDlS~~f 100 (336)
T PRK05671 82 FAEKARA---AGCSVIDLSGAL 100 (336)
T ss_pred HHHHHHH---CCCeEEECchhh
Confidence 7666543 567788776644
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0095 Score=57.89 Aligned_cols=72 Identities=7% Similarity=0.021 Sum_probs=47.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh------------cHH---H-Hhh------------------CCCeEecChHHhhcCC
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI------------VSK---A-TGT------------------MGAKITFDNKEVTLNS 177 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r------------~~e---~-l~e------------------~Gv~v~~d~~eav~~A 177 (303)
|+||||+|+|.||. .++..+.. ..+ + ++. .++.+..+..+++.++
T Consensus 1 ~ikVaI~G~GrIGr-~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~v 79 (341)
T PRK04207 1 MIKVGVNGYGTIGK-RVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKA 79 (341)
T ss_pred CeEEEEECCCHHHH-HHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccC
Confidence 57999999999999 55554221 111 1 111 2344555667777889
Q ss_pred CEEEEeeCCccHHHHHHhhccccCCCCEEE
Q psy6714 178 EVIILAVKPHIVPVALNDIKPVFNESNLLI 207 (303)
Q Consensus 178 DIVILAVpP~~v~~VL~eI~~~L~~g~IVV 207 (303)
|+||.|+++....+.+..... .|+.+|
T Consensus 80 DVVIdaT~~~~~~e~a~~~~~---aGk~VI 106 (341)
T PRK04207 80 DIVVDATPGGVGAKNKELYEK---AGVKAI 106 (341)
T ss_pred CEEEECCCchhhHHHHHHHHH---CCCEEE
Confidence 999999999888877765432 445555
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.017 Score=54.93 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=49.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCCCeEe--cChHHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 132 RSDKQIAGTTERGPGALIASLN----------IVSK---ATGTMGAKIT--FDNKEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~Gv~v~--~d~~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
..|++|||.|.+|.. ++..++ +..+ .+...|+... .+..+.+.++|+||.|+|+..+. ++.
T Consensus 152 g~kvlViG~G~iG~~-~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~---~~~ 227 (296)
T PRK08306 152 GSNVLVLGFGRTGMT-LARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLT---KEV 227 (296)
T ss_pred CCEEEEECCcHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhh---HHH
Confidence 578999999999994 444322 2222 2345677643 24567788999999999865332 233
Q ss_pred ccccCCCCEEEEec
Q psy6714 197 KPVFNESNLLISVA 210 (303)
Q Consensus 197 ~~~L~~g~IVVSia 210 (303)
...++++.+||.+.
T Consensus 228 l~~~~~g~vIIDla 241 (296)
T PRK08306 228 LSKMPPEALIIDLA 241 (296)
T ss_pred HHcCCCCcEEEEEc
Confidence 33456788888665
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.051 Score=50.73 Aligned_cols=140 Identities=13% Similarity=0.027 Sum_probs=82.2
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHHHHhhCCCeEecChHHh---hcCCCEEEEeeCCccHHHHHHhhcc
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSKATGTMGAKITFDNKEV---TLNSEVIILAVKPHIVPVALNDIKP 198 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e~l~e~Gv~v~~d~~ea---v~~ADIVILAVpP~~v~~VL~eI~~ 198 (303)
.|.+||||+|..|...|.++. .+..++.+.+-=.....+.++ .+-.++||.-||...+..+.....
T Consensus 10 ~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~~~s~vaa~~~- 88 (289)
T COG5495 10 RVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDALYSGVAATSL- 88 (289)
T ss_pred eeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHHHHHHHHHhcc-
Confidence 578999999999995354442 222333322110111222233 344577777777765666654443
Q ss_pred ccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHh-----hh--CCcEEEEeCCCCCHHHHHHHHHHHHhcCC-c
Q psy6714 199 VFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPAL-----VR--QGASVFVRGSSASDQDAQTVINLFKSVGT-C 270 (303)
Q Consensus 199 ~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~-----v~--~G~til~~g~~~~~e~~e~V~~Lfs~iG~-~ 270 (303)
..++++|+++++....+.|...-..+|--..+||+.... .. .+..+ +....|+-....+++|...||. .
T Consensus 89 -~rpg~iv~HcSga~~~~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~--~i~eaD~~g~ai~q~la~emgg~~ 165 (289)
T COG5495 89 -NRPGTIVAHCSGANGSGILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIF--GITEADDVGYAIVQSLALEMGGEP 165 (289)
T ss_pred -cCCCeEEEEccCCCchhhhhhhhhcCCcceeecccccccCCHHHHHhCcccEE--EeecccccccHHHHHHHHHhCCCc
Confidence 458999998887777776666544455556788875432 11 22222 2223355566889999999985 5
Q ss_pred EEcCC
Q psy6714 271 EEVPE 275 (303)
Q Consensus 271 v~vdE 275 (303)
+.+.|
T Consensus 166 f~V~~ 170 (289)
T COG5495 166 FCVRE 170 (289)
T ss_pred eeech
Confidence 66654
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.012 Score=56.21 Aligned_cols=81 Identities=14% Similarity=0.185 Sum_probs=44.6
Q ss_pred CcEEEEcCChhhHHHHHHHH------------hhcHHHHh----hC--------CCeEecChHHhhcCCCEEEEeeCCc-
Q psy6714 133 SDKQIAGTTERGPGALIASL------------NIVSKATG----TM--------GAKITFDNKEVTLNSEVIILAVKPH- 187 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al------------~r~~e~l~----e~--------Gv~v~~d~~eav~~ADIVILAVpP~- 187 (303)
|||+|||+|.+|.. ++..+ ++..+++. ++ ...+..+..+.+++||+||+|+...
T Consensus 1 mkI~IIGaG~VG~~-~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~~ 79 (308)
T cd05292 1 MKVAIVGAGFVGST-TAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGANQ 79 (308)
T ss_pred CEEEEECCCHHHHH-HHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCCC
Confidence 79999999999994 44331 11111111 00 1122223346689999999999631
Q ss_pred ----c-----------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 188 ----I-----------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 188 ----~-----------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
. +.+++++|..+-.++ +|+-..+.++.
T Consensus 80 ~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~g-iiiv~tNP~d~ 121 (308)
T cd05292 80 KPGETRLDLLKRNVAIFKEIIPQILKYAPDA-ILLVVTNPVDV 121 (308)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEecCcHHH
Confidence 1 345555666554344 44434455543
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.011 Score=50.12 Aligned_cols=81 Identities=17% Similarity=0.259 Sum_probs=47.0
Q ss_pred CcEEEEcC-ChhhHHHHHHHH------------hhcHH----------HHh-hC--CCeEecChHHhhcCCCEEEEeeC-
Q psy6714 133 SDKQIAGT-TERGPGALIASL------------NIVSK----------ATG-TM--GAKITFDNKEVTLNSEVIILAVK- 185 (303)
Q Consensus 133 mkIgIIGl-G~MG~~~La~al------------~r~~e----------~l~-e~--Gv~v~~d~~eav~~ADIVILAVp- 185 (303)
|||+|||+ |++|. .++..+ +...+ +.. .. ...+..+..+.+++||+||++.-
T Consensus 1 ~KV~IiGa~G~VG~-~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGS-TLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHH-HHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHH-HHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccc
Confidence 79999999 99999 455432 11111 111 11 23444566778899999999982
Q ss_pred ---C-ccH-----------HHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 ---P-HIV-----------PVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 ---P-~~v-----------~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
| +.- .++.+.+..+- ++.++|-+.++++.
T Consensus 80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPvd~ 123 (141)
T PF00056_consen 80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPVDV 123 (141)
T ss_dssp SSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSHHH
T ss_pred cccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcHHH
Confidence 2 112 22333444443 55667767777764
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.019 Score=54.83 Aligned_cols=73 Identities=12% Similarity=0.250 Sum_probs=46.5
Q ss_pred CCCcEEEEcCChhhHHHHHHHH------------hhcHH-------HHhhCCCeE-ecChHHhhcCCCEEEEeeCCccHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASL------------NIVSK-------ATGTMGAKI-TFDNKEVTLNSEVIILAVKPHIVP 190 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al------------~r~~e-------~l~e~Gv~v-~~d~~eav~~ADIVILAVpP~~v~ 190 (303)
...+++|||+|.+|. +.+..+ +++.+ .+...++.+ ..+.++++.++|+||.|++...
T Consensus 124 ~~~~v~IiGaG~qa~-~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~-- 200 (304)
T PRK07340 124 PPGDLLLIGTGVQAR-AHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT-- 200 (304)
T ss_pred CCCEEEEECCcHHHH-HHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC--
Confidence 346899999999998 333321 22222 222334443 3677788999999999998664
Q ss_pred HHHHhhccccCCCCEEEEe
Q psy6714 191 VALNDIKPVFNESNLLISV 209 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSi 209 (303)
.++.. .+++|+.|+.+
T Consensus 201 Pl~~~---~~~~g~hi~~i 216 (304)
T PRK07340 201 PVYPE---AARAGRLVVAV 216 (304)
T ss_pred ceeCc---cCCCCCEEEec
Confidence 44432 36788866543
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.06 Score=48.32 Aligned_cols=134 Identities=15% Similarity=0.135 Sum_probs=70.3
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------hcHH---HHh-hCCCeEecChHHhh-cCCCEEEEeeCCc-cHHHHH
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------IVSK---ATG-TMGAKITFDNKEVT-LNSEVIILAVKPH-IVPVAL 193 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~-e~Gv~v~~d~~eav-~~ADIVILAVpP~-~v~~VL 193 (303)
+..|+|+|+|+|.||.. ++..+. ...+ .+. .+|..... ..++. .+||++|.|..-. .-.+.+
T Consensus 26 l~gk~v~I~G~G~vG~~-~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~-~~~l~~~~~Dv~vp~A~~~~I~~~~~ 103 (200)
T cd01075 26 LEGKTVAVQGLGKVGYK-LAEHLLEEGAKLIVADINEEAVARAAELFGATVVA-PEEIYSVDADVFAPCALGGVINDDTI 103 (200)
T ss_pred CCCCEEEEECCCHHHHH-HHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEc-chhhccccCCEEEecccccccCHHHH
Confidence 34688999999999994 555432 1222 222 34666543 34444 3799999775433 233444
Q ss_pred HhhccccCCCCEEEEecCCCcH-HHHHhhCCCCCceEEEecCcHHhhhCCcEEEE---eCCCCCHHHHHHHHHHHHhcCC
Q psy6714 194 NDIKPVFNESNLLISVAGGVPI-KNMEQALPKNSRIIRAMPNTPALVRQGASVFV---RGSSASDQDAQTVINLFKSVGT 269 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaGV~i-e~L~~~l~~~~~VVr~mPn~p~~v~~G~til~---~g~~~~~e~~e~V~~Lfs~iG~ 269 (303)
+++. .++|+.-.++... ..-.+.|.. ..|.++|..-..- .|+..-+ .+ ...++..+.++.+++.+-.
T Consensus 104 ~~l~-----~~~v~~~AN~~~~~~~~~~~L~~--~Gi~~~Pd~~~Na-GGv~~~~~e~~~-~~~~~~~~~~~~~~~~~~~ 174 (200)
T cd01075 104 PQLK-----AKAIAGAANNQLADPRHGQMLHE--RGILYAPDYVVNA-GGLINVADELYG-GNEARVLAKVEAIYDTLLE 174 (200)
T ss_pred HHcC-----CCEEEECCcCccCCHhHHHHHHH--CCCEEeCceeeeC-cCceeehhHHhC-CcHHHHHHHHHHHHHHHHH
Confidence 4443 4577766665333 233334431 3466666543211 1332211 11 1133556677777766655
Q ss_pred cEEcC
Q psy6714 270 CEEVP 274 (303)
Q Consensus 270 ~v~vd 274 (303)
++...
T Consensus 175 v~~~a 179 (200)
T cd01075 175 IFAQA 179 (200)
T ss_pred HHHHH
Confidence 54443
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.02 Score=55.02 Aligned_cols=99 Identities=23% Similarity=0.281 Sum_probs=53.6
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcHHH----------Hhh-C---CCeEecChHHhhcCCCEEEEeeC
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVSKA----------TGT-M---GAKITFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~e~----------l~e-~---Gv~v~~d~~eav~~ADIVILAVp 185 (303)
++||+|||+|++|. .++..+ +...+. ... . .+..+.+.+ .+++|||||++.-
T Consensus 3 ~~Ki~IiGaG~VG~-~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG 80 (312)
T cd05293 3 RNKVTVVGVGQVGM-ACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAG 80 (312)
T ss_pred CCEEEEECCCHHHH-HHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCC
Confidence 57999999999998 454331 111111 110 1 122234555 4899999999762
Q ss_pred ----Ccc------------HHHHHHhhccccCCCCEEEEecCCCcHH--HHHhh--CCCCCceEEEecC
Q psy6714 186 ----PHI------------VPVALNDIKPVFNESNLLISVAGGVPIK--NMEQA--LPKNSRIIRAMPN 234 (303)
Q Consensus 186 ----P~~------------v~~VL~eI~~~L~~g~IVVSiaaGV~ie--~L~~~--l~~~~~VVr~mPn 234 (303)
|.. +.++.+.|..+ .++.++|-+.+++++- .+.+. ++. .+++.+...
T Consensus 81 ~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d~~t~~~~k~sg~p~-~~viG~gt~ 147 (312)
T cd05293 81 ARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPVDIMTYVAWKLSGLPK-HRVIGSGCN 147 (312)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChHHHHHHHHHHHhCCCH-HHEEecCch
Confidence 221 23344455555 3556677677777653 23333 442 355555433
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.028 Score=53.60 Aligned_cols=71 Identities=14% Similarity=0.161 Sum_probs=45.4
Q ss_pred CcEEEEcCChhhHHHHHHH-Hh-----------hc-----HHHHhhCCCeEe-cChHHhhc--CCCEEEEeeCCccHHHH
Q psy6714 133 SDKQIAGTTERGPGALIAS-LN-----------IV-----SKATGTMGAKIT-FDNKEVTL--NSEVIILAVKPHIVPVA 192 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~a-l~-----------r~-----~e~l~e~Gv~v~-~d~~eav~--~ADIVILAVpP~~v~~V 192 (303)
+||||||+|.||. .+... ++ .+ .+..+++|+... .+.+++++ +.|+||+|++...-.+.
T Consensus 2 lrVAIIG~G~IG~-~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~ 80 (285)
T TIGR03215 2 VKVAIIGSGNIGT-DLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARH 80 (285)
T ss_pred cEEEEEeCcHHHH-HHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence 6899999999998 33322 11 11 122346787654 46666664 57999999998777666
Q ss_pred HHhhccccCCCCEEE
Q psy6714 193 LNDIKPVFNESNLLI 207 (303)
Q Consensus 193 L~eI~~~L~~g~IVV 207 (303)
...... .|+.||
T Consensus 81 a~~al~---aGk~VI 92 (285)
T TIGR03215 81 ARLLAE---LGKIVI 92 (285)
T ss_pred HHHHHH---cCCEEE
Confidence 655432 455554
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >KOG2653|consensus | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.019 Score=56.49 Aligned_cols=132 Identities=18% Similarity=0.267 Sum_probs=78.0
Q ss_pred CCcEEEEcCChhhHHHHHHH----------HhhcHHH----Hh--hCCCe--EecChHHhh---cCCCEEEEeeC-CccH
Q psy6714 132 RSDKQIAGTTERGPGALIAS----------LNIVSKA----TG--TMGAK--ITFDNKEVT---LNSEVIILAVK-PHIV 189 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a----------l~r~~e~----l~--e~Gv~--v~~d~~eav---~~ADIVILAVp-P~~v 189 (303)
.+.||.|||+.||. .|++- +|++..+ +. ..|.. -..+++|.+ +..-+|+|-|+ -..+
T Consensus 6 ~~digLiGLaVMGq-nLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pV 84 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQ-NLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPV 84 (487)
T ss_pred ccchhhhhHhhhhh-hhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcH
Confidence 46799999999999 56643 3333322 21 22333 345666654 57889999998 5557
Q ss_pred HHHHHhhccccCCCCEEEEecCCCc---HHHHHhhCCCCCceEEEecCcHHh-hhCCcEEEEeCCCCCHHHHHHHHHHHH
Q psy6714 190 PVALNDIKPVFNESNLLISVAGGVP---IKNMEQALPKNSRIIRAMPNTPAL-VRQGASVFVRGSSASDQDAQTVINLFK 265 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSiaaGV~---ie~L~~~l~~~~~VVr~mPn~p~~-v~~G~til~~g~~~~~e~~e~V~~Lfs 265 (303)
..++++|.++|.++.+||.-=+..- ....+++...+.-+|.+.-+-..+ .+.|.+++..+ ++++...++.+|+
T Consensus 85 D~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMpGg---~~~Awp~ik~ifq 161 (487)
T KOG2653|consen 85 DQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMPGG---SKEAWPHIKDIFQ 161 (487)
T ss_pred HHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCCCC---ChHHHHHHHHHHH
Confidence 7788999999999999885433221 223444333333333332111111 11234444433 7778888888888
Q ss_pred hc
Q psy6714 266 SV 267 (303)
Q Consensus 266 ~i 267 (303)
.+
T Consensus 162 ~i 163 (487)
T KOG2653|consen 162 KI 163 (487)
T ss_pred HH
Confidence 76
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.021 Score=54.35 Aligned_cols=81 Identities=15% Similarity=0.209 Sum_probs=46.5
Q ss_pred CcEEEEcCChhhHHHHHHHH------------hhcHHH-------Hh------hCCCeEecChHHhhcCCCEEEEeeCCc
Q psy6714 133 SDKQIAGTTERGPGALIASL------------NIVSKA-------TG------TMGAKITFDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al------------~r~~e~-------l~------e~Gv~v~~d~~eav~~ADIVILAVpP~ 187 (303)
+||+|||+|.+|. .++..+ ++..++ +. ..+..+.....+.+++||+||+++...
T Consensus 1 ~kI~IIGaG~vG~-~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~ 79 (306)
T cd05291 1 RKVVIIGAGHVGS-SFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCHHHH-HHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence 4899999999999 454431 111111 10 112233334445678999999999531
Q ss_pred ----------------cHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 188 ----------------IVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 188 ----------------~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
.+.++.+.+..+- ++.+||-..+++++
T Consensus 80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP~d~ 122 (306)
T cd05291 80 QKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNPVDV 122 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecChHHH
Confidence 1344445565544 45566666677765
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.013 Score=56.23 Aligned_cols=82 Identities=16% Similarity=0.302 Sum_probs=49.4
Q ss_pred CCCcEEEEcCChhhHHHHHHHH-----------hhcHH-----HH-----h-hCC--CeE--ecChHHhhcCCCEEEEee
Q psy6714 131 NRSDKQIAGTTERGPGALIASL-----------NIVSK-----AT-----G-TMG--AKI--TFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al-----------~r~~e-----~l-----~-e~G--v~v--~~d~~eav~~ADIVILAV 184 (303)
+++||+|||+|.||.. ++..+ +...+ .+ . ..+ ..+ ..+.+ .+++||+||++.
T Consensus 4 ~~~KI~IIGaG~vG~~-ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 4 KRKKISMIGAGQIGST-VALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCcEEEEECCCHHHHH-HHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 3679999999999984 44321 11111 11 0 112 222 24444 789999999999
Q ss_pred --C--C------------ccHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 185 --K--P------------HIVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 185 --p--P------------~~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
+ + ..+.++++.+..+. ++.++|-..+++++
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~di 127 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPLDC 127 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChHHH
Confidence 2 3 33567777777654 55556656676654
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.095 Score=51.34 Aligned_cols=145 Identities=12% Similarity=0.131 Sum_probs=78.0
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhh--cHH---------------HH--hhCCCeEecChHHhhcCCCEEEEeeCCccHHH
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNI--VSK---------------AT--GTMGAKITFDNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r--~~e---------------~l--~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~ 191 (303)
.+|||||| +|..|. .|...+.. ..+ .+ ....+.+.....+.+.++|+||+|++.....+
T Consensus 5 ~~~VaIvGATG~vG~-ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~~~~Divf~a~~~~~s~~ 83 (347)
T PRK06728 5 GYHVAVVGATGAVGQ-KIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQ 83 (347)
T ss_pred CCEEEEEeCCCHHHH-HHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHhcCCCEEEECCChHHHHH
Confidence 57999999 799999 45555432 111 00 00112222222334578999999999888888
Q ss_pred HHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHH-hhhCCcEEEEeCCCCCHHHH-HHHHHHHHhcCC
Q psy6714 192 ALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPA-LVRQGASVFVRGSSASDQDA-QTVINLFKSVGT 269 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~-~v~~G~til~~g~~~~~e~~-e~V~~Lfs~iG~ 269 (303)
+...+.. .|..||+..+..-. . ..+-..+|.+.. .+..... ++..+++..... -.+..|++..+.
T Consensus 84 ~~~~~~~---~G~~VID~Ss~fR~-------~--~~vplvvPEvN~e~i~~~~~-iIanPnC~tt~~~laL~PL~~~~~i 150 (347)
T PRK06728 84 FVNQAVS---SGAIVIDNTSEYRM-------A--HDVPLVVPEVNAHTLKEHKG-IIAVPNCSALQMVTALQPIRKVFGL 150 (347)
T ss_pred HHHHHHH---CCCEEEECchhhcC-------C--CCCCeEeCCcCHHHHhccCC-EEECCCCHHHHHHHHHHHHHHcCCc
Confidence 8776543 57788877653322 1 122245555432 2222111 233344544433 345666665554
Q ss_pred cEEcCCCCchhhhhhccchHHHHHH
Q psy6714 270 CEEVPEYLLDGITGLSGSGPAYRYE 294 (303)
Q Consensus 270 ~v~vdE~~~Da~tAlsGsgPAf~~~ 294 (303)
+.-..+...++||.|-.-+-.
T Consensus 151 ----~~v~V~t~qavSGAG~~gv~e 171 (347)
T PRK06728 151 ----ERIIVSTYQAVSGSGIHAIQE 171 (347)
T ss_pred ----cEEEEEEeecccccchhhHHH
Confidence 223345556777777555443
|
|
| >KOG2304|consensus | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.016 Score=53.98 Aligned_cols=103 Identities=16% Similarity=0.291 Sum_probs=66.7
Q ss_pred EecChHHhhcCCCEEEEee-CCccH-HHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEe--cCcHHhhhC
Q psy6714 166 ITFDNKEVTLNSEVIILAV-KPHIV-PVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAM--PNTPALVRQ 241 (303)
Q Consensus 166 v~~d~~eav~~ADIVILAV-pP~~v-~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~m--Pn~p~~v~~ 241 (303)
.+++..+++.++|+||=++ -.-++ .+++++|-...++++++.|-...+.+..+...+.....+...| .-.|+. +
T Consensus 86 ~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvM--K 163 (298)
T KOG2304|consen 86 TSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVM--K 163 (298)
T ss_pred HcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhH--H
Confidence 4567778899999998776 23333 3556666666667888888888888888877665433444433 333321 1
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhcCCcE
Q psy6714 242 GASVFVRGSSASDQDAQTVINLFKSVGTCE 271 (303)
Q Consensus 242 G~til~~g~~~~~e~~e~V~~Lfs~iG~~v 271 (303)
=+- ++-.+..+++.+..+..+-+.+|+..
T Consensus 164 LvE-Vir~~~TS~eTf~~l~~f~k~~gKtt 192 (298)
T KOG2304|consen 164 LVE-VIRTDDTSDETFNALVDFGKAVGKTT 192 (298)
T ss_pred Hhh-hhcCCCCCHHHHHHHHHHHHHhCCCc
Confidence 111 12345667888888888888888753
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.022 Score=53.90 Aligned_cols=66 Identities=6% Similarity=0.005 Sum_probs=46.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh--------------cHHHHhh--CCCeEecChHHh-hcCCCEEEEeeCCccHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI--------------VSKATGT--MGAKITFDNKEV-TLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r--------------~~e~l~e--~Gv~v~~d~~ea-v~~ADIVILAVpP~~v~~VL~ 194 (303)
.+||||||+|.||. .++..+.. ..++..+ ..+.++.+..++ ...+|+|+=|-.++.+.+...
T Consensus 2 ~~rvgiIG~GaIG~-~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~av~e~~~ 80 (267)
T PRK13301 2 THRIAFIGLGAIAS-DVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQAIAEHAE 80 (267)
T ss_pred ceEEEEECccHHHH-HHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHHHHHHHHH
Confidence 47899999999999 56654321 1112111 125567778885 578999999999999998887
Q ss_pred hhcc
Q psy6714 195 DIKP 198 (303)
Q Consensus 195 eI~~ 198 (303)
.+..
T Consensus 81 ~iL~ 84 (267)
T PRK13301 81 GCLT 84 (267)
T ss_pred HHHh
Confidence 7653
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.058 Score=51.84 Aligned_cols=82 Identities=11% Similarity=0.192 Sum_probs=46.6
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcHHH-------Hh---h--CCCeEecChHHhhcCCCEEEEeeC-C
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVSKA-------TG---T--MGAKITFDNKEVTLNSEVIILAVK-P 186 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~e~-------l~---e--~Gv~v~~d~~eav~~ADIVILAVp-P 186 (303)
.+||+|||+|.+|. .++..+ +...++ +. . ..+.+..+..+.+++||+||++-- |
T Consensus 6 ~~ki~iiGaG~vG~-~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~ 84 (315)
T PRK00066 6 HNKVVLVGDGAVGS-SYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAP 84 (315)
T ss_pred CCEEEEECCCHHHH-HHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCC
Confidence 46999999999999 455431 111111 11 1 133444455567899999999873 2
Q ss_pred cc---------------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 187 HI---------------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 187 ~~---------------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
.. +.+++..+..+- ++.+||-..+++++
T Consensus 85 ~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsNP~d~ 127 (315)
T PRK00066 85 QKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASNPVDI 127 (315)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCcHHH
Confidence 21 344445555443 44455556666654
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.028 Score=56.38 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=17.4
Q ss_pred eEecChHHhhcCCCEEEEeeCC
Q psy6714 165 KITFDNKEVTLNSEVIILAVKP 186 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVpP 186 (303)
..++|..+++++||+||.++..
T Consensus 64 ~~ttD~~eal~dADfVv~ti~v 85 (431)
T PRK15076 64 TATTDRREALQGADYVINAIQV 85 (431)
T ss_pred EEECCHHHHhCCCCEEeEeeee
Confidence 3456767889999999999953
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.13 Score=49.69 Aligned_cols=65 Identities=9% Similarity=0.012 Sum_probs=40.7
Q ss_pred CCcEEEEcCChhhHHHHHHHH-------------hhcHH--H-HhhCC-CeEecChHHhhc--CCCEEEEeeCCccHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASL-------------NIVSK--A-TGTMG-AKITFDNKEVTL--NSEVIILAVKPHIVPVA 192 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-------------~r~~e--~-l~e~G-v~v~~d~~eav~--~ADIVILAVpP~~v~~V 192 (303)
++||||||+|.++....+..+ ++..+ . ..+++ +.+..|.+++++ +.|+|++|+|+..-.++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~ 80 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEY 80 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHH
Confidence 468999999998752211111 11111 1 23454 556678888885 57999999997766666
Q ss_pred HHhh
Q psy6714 193 LNDI 196 (303)
Q Consensus 193 L~eI 196 (303)
+...
T Consensus 81 ~~~a 84 (344)
T PRK10206 81 AKRA 84 (344)
T ss_pred HHHH
Confidence 5443
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.063 Score=53.61 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=18.6
Q ss_pred eEecChHHhhcCCCEEEEeeCC
Q psy6714 165 KITFDNKEVTLNSEVIILAVKP 186 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVpP 186 (303)
..++|..+++++||+||.+++.
T Consensus 63 ~~ttD~~eal~~AD~Vi~ai~~ 84 (423)
T cd05297 63 EATTDRREALDGADFVINTIQV 84 (423)
T ss_pred EEeCCHHHHhcCCCEEEEeeEe
Confidence 3567778899999999999985
|
linked to 3D####ucture |
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.054 Score=51.07 Aligned_cols=74 Identities=11% Similarity=0.098 Sum_probs=47.2
Q ss_pred CCCcEEEEcCChhhHHHHHHHH-------------hhcHHH----HhhCCCe-EecChHHhhcC--CCEEEEeeCCccHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASL-------------NIVSKA----TGTMGAK-ITFDNKEVTLN--SEVIILAVKPHIVP 190 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al-------------~r~~e~----l~e~Gv~-v~~d~~eav~~--ADIVILAVpP~~v~ 190 (303)
+++||||||+|.++.......+ ++..++ .+++|+. ...|.++++++ .|+|+||+|+..=.
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhH
Confidence 4789999999977752222221 122222 3467874 77888888875 59999999976655
Q ss_pred HHHHhhccccCCCCEEE
Q psy6714 191 VALNDIKPVFNESNLLI 207 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVV 207 (303)
+++.. .|..|+-|+
T Consensus 82 e~~~~---AL~aGkhVl 95 (342)
T COG0673 82 ELALA---ALEAGKHVL 95 (342)
T ss_pred HHHHH---HHhcCCEEE
Confidence 55533 233566555
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.049 Score=53.11 Aligned_cols=78 Identities=9% Similarity=0.059 Sum_probs=48.8
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhh--cHH--------------HHhhCCC--eEecChHHhhcCCCEEEEeeCCccHHHH
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNI--VSK--------------ATGTMGA--KITFDNKEVTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r--~~e--------------~l~e~Gv--~v~~d~~eav~~ADIVILAVpP~~v~~V 192 (303)
.+||+||| +|..|. .|...+.. ... .+...|. .+.....+.++++|+||+|++.....++
T Consensus 7 ~~kVaVvGAtG~vG~-eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s~~~ 85 (344)
T PLN02383 7 GPSVAIVGVTGAVGQ-EFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSISKKF 85 (344)
T ss_pred CCeEEEEcCCChHHH-HHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHHHHH
Confidence 57999998 888888 45555432 110 0111121 1211223456889999999999988888
Q ss_pred HHhhccccCCCCEEEEecCCC
Q psy6714 193 LNDIKPVFNESNLLISVAGGV 213 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSiaaGV 213 (303)
+.++.. .|..||+..+..
T Consensus 86 ~~~~~~---~g~~VIDlS~~f 103 (344)
T PLN02383 86 GPIAVD---KGAVVVDNSSAF 103 (344)
T ss_pred HHHHHh---CCCEEEECCchh
Confidence 776532 577888776543
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.057 Score=53.40 Aligned_cols=78 Identities=5% Similarity=0.082 Sum_probs=46.8
Q ss_pred CCCcEEEEc-CChhhHHHHHHHHhhcHH--------------HHhhCC-----CeE--ecCh-HHhhcCCCEEEEeeCCc
Q psy6714 131 NRSDKQIAG-TTERGPGALIASLNIVSK--------------ATGTMG-----AKI--TFDN-KEVTLNSEVIILAVKPH 187 (303)
Q Consensus 131 ~~mkIgIIG-lG~MG~~~La~al~r~~e--------------~l~e~G-----v~v--~~d~-~eav~~ADIVILAVpP~ 187 (303)
++|||+||| +|..|. .|...+..... .+.... ... ..+. .+.++++|+||+|++..
T Consensus 37 ~~~kVaIvGATG~vG~-eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 37 EKKRIFVLGASGYTGA-EVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred cccEEEEECCCChHHH-HHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 578999999 799998 45544322110 011101 000 1111 22357899999999998
Q ss_pred cHHHHHHhhccccCCCCEEEEecCCC
Q psy6714 188 IVPVALNDIKPVFNESNLLISVAGGV 213 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVVSiaaGV 213 (303)
...+++..+. .+..||++.+..
T Consensus 116 ~s~~i~~~~~----~g~~VIDlSs~f 137 (381)
T PLN02968 116 TTQEIIKALP----KDLKIVDLSADF 137 (381)
T ss_pred HHHHHHHHHh----CCCEEEEcCchh
Confidence 7777777652 467788776543
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.045 Score=52.61 Aligned_cols=73 Identities=11% Similarity=0.138 Sum_probs=46.4
Q ss_pred CCcEEEEcCChhhHHHHHHH-----------HhhcHHH-------Hh-hCCC--eEecChHHhhcCCCEEEEeeCCccHH
Q psy6714 132 RSDKQIAGTTERGPGALIAS-----------LNIVSKA-------TG-TMGA--KITFDNKEVTLNSEVIILAVKPHIVP 190 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a-----------l~r~~e~-------l~-e~Gv--~v~~d~~eav~~ADIVILAVpP~~v~ 190 (303)
..+++|||+|.+|...+... +++..++ +. +.|+ ....+.++++.++|+||.|++..+
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~-- 204 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT-- 204 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC--
Confidence 45799999999998322211 1222222 21 2355 345677888999999999998653
Q ss_pred HHHHhhccccCCCCEEEEe
Q psy6714 191 VALNDIKPVFNESNLLISV 209 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSi 209 (303)
.++. ..+++|+.|+++
T Consensus 205 p~i~---~~l~~G~hV~~i 220 (325)
T PRK08618 205 PVFS---EKLKKGVHINAV 220 (325)
T ss_pred cchH---HhcCCCcEEEec
Confidence 3443 346788876654
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.054 Score=52.98 Aligned_cols=103 Identities=16% Similarity=0.231 Sum_probs=55.0
Q ss_pred ccccccCCCcCCCCCCCCCCCCcccccCCCcEEEEcCChhhHHHHHHHH------------hhcHH----------HHh-
Q psy6714 104 NECASRTPTRADATEAPTTPSSREARWNRSDKQIAGTTERGPGALIASL------------NIVSK----------ATG- 160 (303)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIgIIGlG~MG~~~La~al------------~r~~e----------~l~- 160 (303)
+-|..-.|..++.+.- .++ ..+||+|||+|++|. .++..+ +...+ +..
T Consensus 17 ~~~~~~~~~~~~~~~m----~~~----~~~KI~IIGaG~VG~-~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~ 87 (350)
T PLN02602 17 LSQAFFKPIHNSSPPS----PTR----RHTKVSVVGVGNVGM-AIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAA 87 (350)
T ss_pred hhhhhhhccccccccc----ccC----CCCEEEEECCCHHHH-HHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhh
Confidence 3466666666665511 001 127999999999999 455431 11111 111
Q ss_pred hCC-CeEec-ChHHhhcCCCEEEEeeC----Ccc------------HHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 161 TMG-AKITF-DNKEVTLNSEVIILAVK----PHI------------VPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 161 e~G-v~v~~-d~~eav~~ADIVILAVp----P~~------------v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
-.+ ..+.. ..-+.+++|||||++-- |.. +.++.+.|..+- ++.++|-..+++++-
T Consensus 88 ~~~~~~i~~~~dy~~~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~-p~~ivivvtNPvdv~ 160 (350)
T PLN02602 88 FLPRTKILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYS-PDTILLIVSNPVDVL 160 (350)
T ss_pred cCCCCEEEeCCCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCchHHH
Confidence 111 34432 22345899999999962 211 223334455433 555677677777653
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.039 Score=53.95 Aligned_cols=77 Identities=10% Similarity=0.080 Sum_probs=46.5
Q ss_pred CCcEEEEcCChhhHHHHH-HH----------HhhcHH-------HHhhCC--CeEecChHHhhcCCCEEEEeeCCccHHH
Q psy6714 132 RSDKQIAGTTERGPGALI-AS----------LNIVSK-------ATGTMG--AKITFDNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La-~a----------l~r~~e-------~l~e~G--v~v~~d~~eav~~ADIVILAVpP~~v~~ 191 (303)
-.+++|||+|..+...+. .. +++..+ .+.+.| +.++.+.++++++||||+.|++...-..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~~~P 208 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKTNAT 208 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCCCc
Confidence 357999999999972221 11 122222 233334 4456888999999999999997543223
Q ss_pred HHHhhccccCCCCEEEEecC
Q psy6714 192 ALNDIKPVFNESNLLISVAG 211 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSiaa 211 (303)
++.. +.+++|+.|. .++
T Consensus 209 vl~~--~~lkpG~hV~-aIG 225 (346)
T PRK07589 209 ILTD--DMVEPGMHIN-AVG 225 (346)
T ss_pred eecH--HHcCCCcEEE-ecC
Confidence 3321 2456777644 443
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.067 Score=51.90 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=16.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHh
Q psy6714 132 RSDKQIAGTTERGPGALIASLN 153 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~ 153 (303)
.++|+|||+|.||. .++..+.
T Consensus 2 ~i~V~IiG~G~VG~-~~~~~L~ 22 (341)
T PRK06270 2 EMKIALIGFGGVGQ-GVAELLA 22 (341)
T ss_pred eEEEEEECCCHHHH-HHHHHHH
Confidence 47899999999999 4555443
|
|
| >COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.14 Score=47.69 Aligned_cols=130 Identities=20% Similarity=0.328 Sum_probs=81.2
Q ss_pred hCCCeEecChHHhhcCCCEEEEeeCC-ccHHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCC----CCCceEEEecCc
Q psy6714 161 TMGAKITFDNKEVTLNSEVIILAVKP-HIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALP----KNSRIIRAMPNT 235 (303)
Q Consensus 161 e~Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~----~~~~VVr~mPn~ 235 (303)
+.|+.+++|..++++++|+||.=+|- ..-.++++.+.+-+.+|.||- -..-+...++.+.|. .+.++-.+||..
T Consensus 124 d~g~~vttddreavedad~iitwlpkg~~qpdiikkfiddipegaivt-hactipttkf~kifed~gredlnvtsyhpg~ 202 (343)
T COG4074 124 DMGIVVTTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVT-HACTIPTTKFKKIFEDMGREDLNVTSYHPGT 202 (343)
T ss_pred HceeEEecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCCCCceEe-eecccchHHHHHHHHHhCccccceeccCCCC
Confidence 56888889999999999999988863 333456666666666787654 444577666666553 245677777764
Q ss_pred HHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhc-CCcEEcCCCCchhhhhhccchHHHHH
Q psy6714 236 PALVRQGASVFVRGSSASDQDAQTVINLFKSV-GTCEEVPEYLLDGITGLSGSGPAYRY 293 (303)
Q Consensus 236 p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~i-G~~v~vdE~~~Da~tAlsGsgPAf~~ 293 (303)
--+ -+|..-+.-| -.+++....+-+|=+.. |..+.++...+.-+..++|..-|.+|
T Consensus 203 vpe-mkgqvyiaeg-yaseeavn~lyelg~karg~afk~pa~llgpvcdmcsavtaivy 259 (343)
T COG4074 203 VPE-MKGQVYIAEG-YASEEAVNALYELGEKARGLAFKVPAYLLGPVCDMCSAVTAIVY 259 (343)
T ss_pred Ccc-ccCcEEEecc-cccHHHHHHHHHHHHHhhcccccCcHHhhchHHHHHHHHHHHHH
Confidence 222 2444444433 34777766666665554 56777876665555555444444433
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.055 Score=53.13 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=34.0
Q ss_pred hcCCCEEEEeeCCccHHHHHHhhccccCC--------CCEEEEecCCCcHH-HHHh
Q psy6714 174 TLNSEVIILAVKPHIVPVALNDIKPVFNE--------SNLLISVAGGVPIK-NMEQ 220 (303)
Q Consensus 174 v~~ADIVILAVpP~~v~~VL~eI~~~L~~--------g~IVVSiaaGV~ie-~L~~ 220 (303)
+.++|+|+++|++.....++..|.+.|.. .-.|+|+.+++... .|++
T Consensus 78 ~~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng~~L~~ 133 (381)
T PRK02318 78 IAEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIRGTSFLKK 133 (381)
T ss_pred hcCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhhHHHHHHH
Confidence 34789999999999988887776655432 22688999988763 3443
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.087 Score=50.57 Aligned_cols=81 Identities=14% Similarity=0.242 Sum_probs=46.5
Q ss_pred cEEEEcCChhhHHHHHHHH------------hhcHHH-------H---hh---C-CCeEecChHHhhcCCCEEEEeeC--
Q psy6714 134 DKQIAGTTERGPGALIASL------------NIVSKA-------T---GT---M-GAKITFDNKEVTLNSEVIILAVK-- 185 (303)
Q Consensus 134 kIgIIGlG~MG~~~La~al------------~r~~e~-------l---~e---~-Gv~v~~d~~eav~~ADIVILAVp-- 185 (303)
||+|||+|++|. .++..+ +...++ + .. . .+++..+..+.+++|||||++.-
T Consensus 1 Ki~IIGaG~VG~-~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~ 79 (307)
T cd05290 1 KLVVIGAGHVGS-AVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPS 79 (307)
T ss_pred CEEEECCCHHHH-HHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCC
Confidence 799999999999 454331 111110 1 11 1 23444444577899999999872
Q ss_pred --CccH---H-----------HHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 186 --PHIV---P-----------VALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 186 --P~~v---~-----------~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
|..- . ++.+.+..+- ++.++|-+.++++.-
T Consensus 80 ~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsNPvDv~ 125 (307)
T cd05290 80 IDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITNPLDIA 125 (307)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCcHHHH
Confidence 3222 2 2333444443 556677677887763
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.12 Score=49.86 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=53.2
Q ss_pred CCcEEEEcCChhhHHHHHHHH-----------hhcHH-----HH------hhCC--CeEe--cChHHhhcCCCEEEEeeC
Q psy6714 132 RSDKQIAGTTERGPGALIASL-----------NIVSK-----AT------GTMG--AKIT--FDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-----------~r~~e-----~l------~e~G--v~v~--~d~~eav~~ADIVILAVp 185 (303)
++||+|||.|.||.+ ++..+ +...+ .+ ...+ ..+. .|. +.+++||+||++.-
T Consensus 6 ~~KI~IIGaG~vG~~-ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~tag 83 (321)
T PTZ00082 6 RRKISLIGSGNIGGV-MAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTAG 83 (321)
T ss_pred CCEEEEECCCHHHHH-HHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECCC
Confidence 469999999999984 44321 11111 11 1112 2333 444 57899999999772
Q ss_pred ----Ccc-----------------HHHHHHhhccccCCCCEEEEecCCCcHH--HHHhhCCC-CCceEEEe
Q psy6714 186 ----PHI-----------------VPVALNDIKPVFNESNLLISVAGGVPIK--NMEQALPK-NSRIIRAM 232 (303)
Q Consensus 186 ----P~~-----------------v~~VL~eI~~~L~~g~IVVSiaaGV~ie--~L~~~l~~-~~~VVr~m 232 (303)
+.. +.++++.+.++. ++.++|-..+++++- .+.+..+- ..+++.+.
T Consensus 84 ~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 84 LTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 222 445556666655 444555566766542 34333321 13566555
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.051 Score=54.14 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=45.6
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH-----------hhcHHH----HhhCCCeE--ecChHHhhcCCCEEEEeeC-CccH--
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL-----------NIVSKA----TGTMGAKI--TFDNKEVTLNSEVIILAVK-PHIV-- 189 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al-----------~r~~e~----l~e~Gv~v--~~d~~eav~~ADIVILAVp-P~~v-- 189 (303)
+..++|+|||+|.||. .++..+ ++..++ ..++|..+ ..+..+.+.++|+||.|++ +..+
T Consensus 180 ~~~~~vlViGaG~iG~-~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~~i~ 258 (423)
T PRK00045 180 LSGKKVLVIGAGEMGE-LVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHPIIG 258 (423)
T ss_pred ccCCEEEEECchHHHH-HHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCcEEc
Confidence 3467899999999998 344332 122222 23455432 2345567889999999996 3322
Q ss_pred HHHHHhhc-cccCCCCEEEEecC
Q psy6714 190 PVALNDIK-PVFNESNLLISVAG 211 (303)
Q Consensus 190 ~~VL~eI~-~~L~~g~IVVSiaa 211 (303)
.+.++... ..-..+.++|.+..
T Consensus 259 ~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 259 KGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred HHHHHHHHhhccCCCeEEEEeCC
Confidence 33443321 10013456666644
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.084 Score=50.79 Aligned_cols=72 Identities=10% Similarity=0.179 Sum_probs=44.2
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcHHH-------Hh-hCCC--eEecChHHhhcCCCEEEEeeCCccH
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVSKA-------TG-TMGA--KITFDNKEVTLNSEVIILAVKPHIV 189 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~e~-------l~-e~Gv--~v~~d~~eav~~ADIVILAVpP~~v 189 (303)
..+|+|||+|.+|... +..+ ++..++ +. ..|+ .+..+.+++++ +|+|++|+|...
T Consensus 129 ~~~vgiiG~G~qa~~h-~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~- 205 (326)
T PRK06046 129 SKVVGIIGAGNQARTQ-LLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK- 205 (326)
T ss_pred CCEEEEECCcHHHHHH-HHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC-
Confidence 3579999999999832 2221 122221 22 1354 44567788887 999999998653
Q ss_pred HHHHHhhccccCCCCEEEEe
Q psy6714 190 PVALNDIKPVFNESNLLISV 209 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSi 209 (303)
.++. ...+++++.|.++
T Consensus 206 -P~~~--~~~l~~g~hV~~i 222 (326)
T PRK06046 206 -PVVK--AEWIKEGTHINAI 222 (326)
T ss_pred -cEec--HHHcCCCCEEEec
Confidence 3332 1235678876544
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.047 Score=43.14 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=43.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhc------------HHHHh--hCCCeEecChHHhhcC--CCEEEEeeCCccHHHHHHh
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIV------------SKATG--TMGAKITFDNKEVTLN--SEVIILAVKPHIVPVALND 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~------------~e~l~--e~Gv~v~~d~~eav~~--ADIVILAVpP~~v~~VL~e 195 (303)
..+++|+|+|++|.. +....... .++.- -.|+.+..+..++.+. .|+.|||||+..+.+++.+
T Consensus 3 ~~~v~ivGag~~G~a-~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~~a~~~~~~ 81 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRA-LLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAEAAQEVADE 81 (96)
T ss_dssp TEEEEEETTTSHHHH-HHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HHHHHHHHHH
T ss_pred CCeEEEECCCCcHHH-HHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHHHHHHHHHH
Confidence 346999999999994 44321111 11111 1256666566666555 9999999999999999887
Q ss_pred hcc
Q psy6714 196 IKP 198 (303)
Q Consensus 196 I~~ 198 (303)
+..
T Consensus 82 ~~~ 84 (96)
T PF02629_consen 82 LVE 84 (96)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >KOG2305|consensus | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.094 Score=49.02 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=65.5
Q ss_pred EecChHHhhcCCCEEEEeeC-CccHH-HHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCc
Q psy6714 166 ITFDNKEVTLNSEVIILAVK-PHIVP-VALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGA 243 (303)
Q Consensus 166 v~~d~~eav~~ADIVILAVp-P~~v~-~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~ 243 (303)
.+++..|+++.+=.|==||| .-.++ .+.+++-..+.+.+|+-|-..-+-...+.+-+-+..+++-+||--|--+ --.
T Consensus 74 ~t~~l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyf-iPL 152 (313)
T KOG2305|consen 74 GTTSLNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYF-IPL 152 (313)
T ss_pred CCccHHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcc-cch
Confidence 35678899998888888887 33444 3335555545455444344444444555444433346667776443211 111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCC-cEEcC
Q psy6714 244 SVFVRGSSASDQDAQTVINLFKSVGT-CEEVP 274 (303)
Q Consensus 244 til~~g~~~~~e~~e~V~~Lfs~iG~-~v~vd 274 (303)
+=+++.+-.+++.++....|+..+|. ++.+.
T Consensus 153 vElVPaPwTsp~tVdrt~~lM~sigq~pV~l~ 184 (313)
T KOG2305|consen 153 VELVPAPWTSPDTVDRTRALMRSIGQEPVTLK 184 (313)
T ss_pred heeccCCCCChhHHHHHHHHHHHhCCCCcccc
Confidence 23456677788999999999999994 56554
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.095 Score=50.47 Aligned_cols=74 Identities=18% Similarity=0.151 Sum_probs=46.6
Q ss_pred CCcEEEEcCChhhHHHHHHH-----------HhhcHH-------HHhhCCCe--EecChHHhhcCCCEEEEeeCCccHHH
Q psy6714 132 RSDKQIAGTTERGPGALIAS-----------LNIVSK-------ATGTMGAK--ITFDNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a-----------l~r~~e-------~l~e~Gv~--v~~d~~eav~~ADIVILAVpP~~v~~ 191 (303)
-.+++|||+|..+...+... +++..+ .+++.|+. ++.+.++++++||||+.|++... .
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~--P 205 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE--P 205 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC--c
Confidence 35799999999997322211 122222 22333553 46788899999999999997553 4
Q ss_pred HHHhhccccCCCCEEEEe
Q psy6714 192 ALNDIKPVFNESNLLISV 209 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSi 209 (303)
+++ .+.+++|+.|+.+
T Consensus 206 ~~~--~~~l~~G~hi~~i 221 (315)
T PRK06823 206 LLQ--AEDIQPGTHITAV 221 (315)
T ss_pred eeC--HHHcCCCcEEEec
Confidence 442 1246688876644
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.063 Score=52.29 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=48.6
Q ss_pred CCCcEEEEc-CChhhHHHHHHHHhh--cHH--------------HHh--hCCCeEecChHHh-hcCCCEEEEeeCCccHH
Q psy6714 131 NRSDKQIAG-TTERGPGALIASLNI--VSK--------------ATG--TMGAKITFDNKEV-TLNSEVIILAVKPHIVP 190 (303)
Q Consensus 131 ~~mkIgIIG-lG~MG~~~La~al~r--~~e--------------~l~--e~Gv~v~~d~~ea-v~~ADIVILAVpP~~v~ 190 (303)
..+||+||| +|..|. .|...+.. .+. .+. ...+.+. +..+. ..++|+||+|+|.....
T Consensus 3 ~~~~vaIvGATG~vG~-ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~~s~ 80 (336)
T PRK08040 3 EGWNIALLGATGAVGE-ALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGREASA 80 (336)
T ss_pred CCCEEEEEccCCHHHH-HHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHHHHH
Confidence 368999999 799999 46655433 110 010 0112222 32222 36899999999988777
Q ss_pred HHHHhhccccCCCCEEEEecCCC
Q psy6714 191 VALNDIKPVFNESNLLISVAGGV 213 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSiaaGV 213 (303)
+++..+.. .|..||+..+..
T Consensus 81 ~~~~~~~~---~g~~VIDlS~~f 100 (336)
T PRK08040 81 AYAEEATN---AGCLVIDSSGLF 100 (336)
T ss_pred HHHHHHHH---CCCEEEECChHh
Confidence 88776643 577888776533
|
|
| >KOG2666|consensus | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.28 Score=47.92 Aligned_cols=64 Identities=20% Similarity=0.267 Sum_probs=40.5
Q ss_pred eEecChHHhhcCCCEEEEeeC-Ccc--------------HHHHHHhhccccCCCCEEE--EecCCCc-HHHHHhhCCCCC
Q psy6714 165 KITFDNKEVTLNSEVIILAVK-PHI--------------VPVALNDIKPVFNESNLLI--SVAGGVP-IKNMEQALPKNS 226 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVp-P~~--------------v~~VL~eI~~~L~~g~IVV--SiaaGV~-ie~L~~~l~~~~ 226 (303)
-..+|.+..++++|+||++|. |.- +++...-|.+.-...+||| |++ ++. .+.++..|..+.
T Consensus 67 ffstdiekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstv-pv~aaesi~~il~~n~ 145 (481)
T KOG2666|consen 67 FFSTDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTV-PVKAAESIEKILNHNS 145 (481)
T ss_pred eeecchHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccc-cchHHHHHHHHHhcCC
Confidence 346788889999999999994 432 3444455666555778877 443 333 356777775333
Q ss_pred ceE
Q psy6714 227 RII 229 (303)
Q Consensus 227 ~VV 229 (303)
+.+
T Consensus 146 ~~i 148 (481)
T KOG2666|consen 146 KGI 148 (481)
T ss_pred CCc
Confidence 333
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.15 Score=49.58 Aligned_cols=41 Identities=5% Similarity=0.148 Sum_probs=26.2
Q ss_pred ChHHhh--cCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCC
Q psy6714 169 DNKEVT--LNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGG 212 (303)
Q Consensus 169 d~~eav--~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaG 212 (303)
+..+++ .++||||=++.++...+++..+ +..++-||+...|
T Consensus 82 ~~~ell~~~~~DVvVd~t~~~~a~~~~~~a---l~~G~~VVtanK~ 124 (336)
T PRK08374 82 SPEEIVEEIDADIVVDVTNDKNAHEWHLEA---LKEGKSVVTSNKP 124 (336)
T ss_pred CHHHHHhcCCCCEEEECCCcHHHHHHHHHH---HhhCCcEEECCHH
Confidence 344555 4789999999877666666554 3356666655443
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.086 Score=51.32 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=47.9
Q ss_pred CcEEEEcCChhhHHHHHHHH------------hhcHH-------HHhhC-C--CeEecChHHhhcCCCEEEEeeCCccHH
Q psy6714 133 SDKQIAGTTERGPGALIASL------------NIVSK-------ATGTM-G--AKITFDNKEVTLNSEVIILAVKPHIVP 190 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al------------~r~~e-------~l~e~-G--v~v~~d~~eav~~ADIVILAVpP~~v~ 190 (303)
..++|||+|.++. .-+..+ .+..+ .+.+. + +..+.+.+++++.||||+.|++...
T Consensus 131 ~~laiIGaG~qA~-~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 131 STLAIIGAGAQAR-TQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred cEEEEECCcHHHH-HHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 4699999999998 333221 12222 23333 3 3566788999999999999998776
Q ss_pred HHHHhhccccCCCCEEEEecCC
Q psy6714 191 VALNDIKPVFNESNLLISVAGG 212 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSiaaG 212 (303)
.+++ .+++++++.|. .+++
T Consensus 208 Pil~--~~~l~~G~hI~-aiGa 226 (330)
T COG2423 208 PVLK--AEWLKPGTHIN-AIGA 226 (330)
T ss_pred Ceec--HhhcCCCcEEE-ecCC
Confidence 4442 23466787654 4443
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.073 Score=52.53 Aligned_cols=77 Identities=10% Similarity=0.073 Sum_probs=45.8
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhc-H--------------HHHhhC-C--CeEec-ChHHhhcCCCEEEEeeCCccHHH
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIV-S--------------KATGTM-G--AKITF-DNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~-~--------------e~l~e~-G--v~v~~-d~~eav~~ADIVILAVpP~~v~~ 191 (303)
||+|+||| +|..|..++-+.+... . .+...+ | ..+.. ...+.+.++|+||+|++.....+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~~~s~~ 80 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDIDALKKLDIIITCQGGDYTNE 80 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChhHhcCCCEEEECCCHHHHHH
Confidence 57999999 7999995332232211 0 011111 1 12222 22344578999999999888888
Q ss_pred HHHhhccccCCC--CEEEEecC
Q psy6714 192 ALNDIKPVFNES--NLLISVAG 211 (303)
Q Consensus 192 VL~eI~~~L~~g--~IVVSiaa 211 (303)
+...+.. .| .+||+..+
T Consensus 81 ~~~~~~~---aG~~~~VID~Ss 99 (369)
T PRK06598 81 VYPKLRA---AGWQGYWIDAAS 99 (369)
T ss_pred HHHHHHh---CCCCeEEEECCh
Confidence 8776643 45 45776654
|
|
| >KOG0068|consensus | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.11 Score=50.89 Aligned_cols=90 Identities=19% Similarity=0.237 Sum_probs=60.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh------------cHHHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHHH-hhc
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI------------VSKATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVALN-DIK 197 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r------------~~e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL~-eI~ 197 (303)
.+++||||+|.||+ .+++.++- ..+.+..+|++. .+.+|++..||+|-|=+| -...+.++. +-.
T Consensus 146 GKTLgvlG~GrIGs-eVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~-vsl~Eil~~ADFitlH~PLtP~T~~lin~~tf 223 (406)
T KOG0068|consen 146 GKTLGVLGLGRIGS-EVAVRAKAMGMHVIGYDPITPMALAEAFGVQL-VSLEEILPKADFITLHVPLTPSTEKLLNDETF 223 (406)
T ss_pred ccEEEEeecccchH-HHHHHHHhcCceEEeecCCCchHHHHhcccee-eeHHHHHhhcCEEEEccCCCcchhhccCHHHH
Confidence 36899999999999 57665331 224566788876 567889999999988887 444555552 222
Q ss_pred cccCCCCEEEEec-CCC-cHHHHHhhCC
Q psy6714 198 PVFNESNLLISVA-GGV-PIKNMEQALP 223 (303)
Q Consensus 198 ~~L~~g~IVVSia-aGV-~ie~L~~~l~ 223 (303)
..+++|.-||.++ +|+ +...|-+.+.
T Consensus 224 A~mKkGVriIN~aRGGvVDe~ALv~Al~ 251 (406)
T KOG0068|consen 224 AKMKKGVRIINVARGGVVDEPALVRALD 251 (406)
T ss_pred HHhhCCcEEEEecCCceechHHHHHHHh
Confidence 2356788888776 343 4445555443
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.058 Score=51.69 Aligned_cols=76 Identities=9% Similarity=0.082 Sum_probs=38.8
Q ss_pred CCcEEEEcCChhhHHHHHHH-----------HhhcH-------HHHhhCCC--eEecChHHhhcCCCEEEEeeCCccHHH
Q psy6714 132 RSDKQIAGTTERGPGALIAS-----------LNIVS-------KATGTMGA--KITFDNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a-----------l~r~~-------e~l~e~Gv--~v~~d~~eav~~ADIVILAVpP~~v~~ 191 (303)
..+++|||+|..+...+... +++.. +.+.++|+ ..+.+.++++++||||+.|++......
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~P 207 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPAP 207 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCCc
Confidence 34799999999998322211 12222 22333455 456788999999999999998665212
Q ss_pred HHHhhccccCCCCEEEEe
Q psy6714 192 ALNDIKPVFNESNLLISV 209 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSi 209 (303)
++. ...+++|+.|+++
T Consensus 208 ~~~--~~~l~~g~hi~~i 223 (313)
T PF02423_consen 208 VFD--AEWLKPGTHINAI 223 (313)
T ss_dssp SB---GGGS-TT-EEEE-
T ss_pred ccc--HHHcCCCcEEEEe
Confidence 322 2346688766544
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.16 Score=51.83 Aligned_cols=78 Identities=10% Similarity=0.130 Sum_probs=49.0
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHH-Hh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------IVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVAL-ND 195 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL-~e 195 (303)
+..++++|||+|.||.+ ++..++ .... .....|+.+ .+..++++.+|+||+|+-... ++ .+
T Consensus 252 LaGKtVgVIG~G~IGr~-vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atGt~~---iI~~e 326 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKG-CAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATGNKD---IITLE 326 (476)
T ss_pred cCCCEEEEECCCHHHHH-HHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCCccc---ccCHH
Confidence 34678999999999994 554422 1111 122357654 467788999999999985333 22 12
Q ss_pred hccccCCCCEEEEecCC
Q psy6714 196 IKPVFNESNLLISVAGG 212 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaG 212 (303)
....++++.+||.+.-+
T Consensus 327 ~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 327 HMRRMKNNAIVGNIGHF 343 (476)
T ss_pred HHhccCCCcEEEEcCCC
Confidence 33345678888866444
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.29 Score=47.46 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=33.6
Q ss_pred CeEecChHHhhcCCCEEEEeeC----Cc------------cHHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 164 AKITFDNKEVTLNSEVIILAVK----PH------------IVPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVp----P~------------~v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
+.+..+..+.+++|||||++-- |. .+.++.++|..+..++.+||-+.+++++-
T Consensus 68 ~~i~~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~ 136 (326)
T PRK05442 68 VVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTN 136 (326)
T ss_pred cEEecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHH
Confidence 3444555677899999999873 22 13445556666554466666677777753
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.13 Score=49.72 Aligned_cols=76 Identities=9% Similarity=0.066 Sum_probs=46.9
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhh--cHH----H----------HhhCCC--eEecChHHhhcCCCEEEEeeCCccHHHH
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNI--VSK----A----------TGTMGA--KITFDNKEVTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r--~~e----~----------l~e~Gv--~v~~d~~eav~~ADIVILAVpP~~v~~V 192 (303)
+|||+||| .|..|. .|+..+.. ... . +.-.|. .+.....+.++++|+||+|++.....++
T Consensus 1 ~~~V~IvGAtG~vG~-~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~ 79 (334)
T PRK14874 1 GYNVAVVGATGAVGR-EMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKKY 79 (334)
T ss_pred CCEEEEECCCCHHHH-HHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHHH
Confidence 57999998 899998 56655433 111 0 100121 2211122335789999999998888888
Q ss_pred HHhhccccCCCCEEEEecC
Q psy6714 193 LNDIKPVFNESNLLISVAG 211 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSiaa 211 (303)
+..+.. .|..||++.+
T Consensus 80 ~~~~~~---~G~~VIDlS~ 95 (334)
T PRK14874 80 APKAAA---AGAVVIDNSS 95 (334)
T ss_pred HHHHHh---CCCEEEECCc
Confidence 776543 5667886654
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.14 Score=48.90 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=46.3
Q ss_pred CCcEEEEcCChhhHHHHHH-H----------HhhcHH-------HHhh-CCC--eEecChHHhhcCCCEEEEeeCCccHH
Q psy6714 132 RSDKQIAGTTERGPGALIA-S----------LNIVSK-------ATGT-MGA--KITFDNKEVTLNSEVIILAVKPHIVP 190 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~-a----------l~r~~e-------~l~e-~Gv--~v~~d~~eav~~ADIVILAVpP~~v~ 190 (303)
-.+++|||+|..|...+.. . ++++.+ .+.+ .|+ .++.+.++++.+||||+.|++...
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~-- 194 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT-- 194 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC--
Confidence 3579999999999832211 1 122222 2222 354 456789999999999999998553
Q ss_pred HHHHhhccccCCCCEEEEecC
Q psy6714 191 VALNDIKPVFNESNLLISVAG 211 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSiaa 211 (303)
.++. ..++++++.|. .++
T Consensus 195 P~~~--~~~l~pg~hV~-aiG 212 (301)
T PRK06407 195 PIFN--RKYLGDEYHVN-LAG 212 (301)
T ss_pred cEec--HHHcCCCceEE-ecC
Confidence 3432 12456776654 444
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.26 Score=45.68 Aligned_cols=65 Identities=26% Similarity=0.255 Sum_probs=39.6
Q ss_pred EecChHHhhcCCCEEEEeeCC----------------ccHHHHHHhhccccCCCCEEEEecCCCcHH--HHHhh--CCCC
Q psy6714 166 ITFDNKEVTLNSEVIILAVKP----------------HIVPVALNDIKPVFNESNLLISVAGGVPIK--NMEQA--LPKN 225 (303)
Q Consensus 166 v~~d~~eav~~ADIVILAVpP----------------~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie--~L~~~--l~~~ 225 (303)
.++|..+.+++||+||++.-. ..+.++++++..+. ++.++|-..++++.- .+.+. ++.
T Consensus 60 ~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d~~t~~~~~~sg~~~- 137 (263)
T cd00650 60 ITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVDIITYLVWRYSGLPK- 137 (263)
T ss_pred ECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHhCCCc-
Confidence 345557889999999996622 23556666676655 556666667777653 34444 342
Q ss_pred CceEEEe
Q psy6714 226 SRIIRAM 232 (303)
Q Consensus 226 ~~VVr~m 232 (303)
.+++.+-
T Consensus 138 ~kviG~~ 144 (263)
T cd00650 138 EKVIGLG 144 (263)
T ss_pred hhEEEee
Confidence 3555554
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.17 Score=52.07 Aligned_cols=84 Identities=11% Similarity=0.162 Sum_probs=49.8
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH-----------hhcHHH---Hh-hC-CCe----EecChHHhhcCCCEEEEeeC---C
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL-----------NIVSKA---TG-TM-GAK----ITFDNKEVTLNSEVIILAVK---P 186 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al-----------~r~~e~---l~-e~-Gv~----v~~d~~eav~~ADIVILAVp---P 186 (303)
+...+|+|||+|.||.. ++..+ ++..++ +. ++ |.. ...+..+++.++|+||.|++ |
T Consensus 264 l~~kkVlVIGAG~mG~~-~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~p 342 (519)
T PLN00203 264 HASARVLVIGAGKMGKL-LVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETP 342 (519)
T ss_pred CCCCEEEEEeCHHHHHH-HHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCC
Confidence 44678999999999994 44332 222222 22 23 332 12455678899999999973 5
Q ss_pred ccHHHHHHhhcccc---CCCCEEEEecCCCc
Q psy6714 187 HIVPVALNDIKPVF---NESNLLISVAGGVP 214 (303)
Q Consensus 187 ~~v~~VL~eI~~~L---~~g~IVVSiaaGV~ 214 (303)
....+.++.+.+.- ....+||.++-+=+
T Consensus 343 vI~~e~l~~~~~~~~~~~~~~~~IDLAvPRd 373 (519)
T PLN00203 343 LFLKEHVEALPPASDTVGGKRLFVDISVPRN 373 (519)
T ss_pred eeCHHHHHHhhhcccccCCCeEEEEeCCCCC
Confidence 55667777654211 11247777654433
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.52 Score=47.18 Aligned_cols=85 Identities=11% Similarity=0.170 Sum_probs=52.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHH-hhc
Q psy6714 132 RSDKQIAGTTERGPGALIASLN----------IVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALN-DIK 197 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~-eI~ 197 (303)
..+++|+|+|.+|. .++..++ .+.. .+...|+.+ .+.+++++.+|+||.++.... ++. +..
T Consensus 195 Gk~VvViG~G~IG~-~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v-~~leeal~~aDVVItaTG~~~---vI~~~~~ 269 (406)
T TIGR00936 195 GKTVVVAGYGWCGK-GIAMRARGMGARVIVTEVDPIRALEAAMDGFRV-MTMEEAAKIGDIFITATGNKD---VIRGEHF 269 (406)
T ss_pred cCEEEEECCCHHHH-HHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEe-CCHHHHHhcCCEEEECCCCHH---HHHHHHH
Confidence 56899999999999 4554432 1121 223457755 355778899999999886433 332 233
Q ss_pred cccCCCCEEEEecC---CCcHHHHHhh
Q psy6714 198 PVFNESNLLISVAG---GVPIKNMEQA 221 (303)
Q Consensus 198 ~~L~~g~IVVSiaa---GV~ie~L~~~ 221 (303)
..++++.+|+...- .++.+.|.+.
T Consensus 270 ~~mK~GailiN~G~~~~eId~~aL~~~ 296 (406)
T TIGR00936 270 ENMKDGAIVANIGHFDVEIDVKALEEL 296 (406)
T ss_pred hcCCCCcEEEEECCCCceeCHHHHHHH
Confidence 45667877775432 1455556543
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.15 Score=48.21 Aligned_cols=44 Identities=23% Similarity=0.343 Sum_probs=27.9
Q ss_pred HHhhcCCCEEEEeeC-C---c------------cHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 171 KEVTLNSEVIILAVK-P---H------------IVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 171 ~eav~~ADIVILAVp-P---~------------~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
.+.+++||+||+++. | . .+.+++++|..+. ++.++|-..+++++
T Consensus 61 ~~~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~di 120 (300)
T cd01339 61 YEDIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPLDV 120 (300)
T ss_pred HHHhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHH
Confidence 456899999999883 1 1 1345666676655 44455556666654
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.25 Score=47.37 Aligned_cols=81 Identities=17% Similarity=0.203 Sum_probs=48.4
Q ss_pred CcEEEEcC-ChhhHHHHHHHHh-------------hcHH------HHhhCC--CeEe----cChHHhhcCCCEEEEeeC-
Q psy6714 133 SDKQIAGT-TERGPGALIASLN-------------IVSK------ATGTMG--AKIT----FDNKEVTLNSEVIILAVK- 185 (303)
Q Consensus 133 mkIgIIGl-G~MG~~~La~al~-------------r~~e------~l~e~G--v~v~----~d~~eav~~ADIVILAVp- 185 (303)
|||+|||. |.+|. .++..+. +... .+...+ ..+. .+..+.++++|+||+|.-
T Consensus 1 ~KI~IIGAsG~VG~-aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQ-ALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHH-HHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 79999998 99999 4553321 1110 011111 1221 343577889999999983
Q ss_pred ---Cc------------cHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 ---PH------------IVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 ---P~------------~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
+. .+.++++.+..+ .++.+|+-..+++++
T Consensus 80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~D~ 123 (312)
T PRK05086 80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPVNT 123 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchHH
Confidence 22 344555556554 356677778888865
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.29 Score=47.28 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=31.9
Q ss_pred eEecChHHhhcCCCEEEEeeC----Cc-c-----------HHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 165 KITFDNKEVTLNSEVIILAVK----PH-I-----------VPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVp----P~-~-----------v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
.+..+..+.+++|||||++-- |. . +.++..+|..+-.++.+||-+.++++.-
T Consensus 67 ~i~~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~ 134 (322)
T cd01338 67 VITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTN 134 (322)
T ss_pred EEecCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHH
Confidence 344555677899999999872 22 1 3444555665543355666566777653
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.33 Score=48.82 Aligned_cols=85 Identities=11% Similarity=0.209 Sum_probs=51.2
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh----------hcHHH---HhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHH-hh
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN----------IVSKA---TGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALN-DI 196 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~----------r~~e~---l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~-eI 196 (303)
...+++|+|+|.||. .++..++ ....+ +...|+.+ .+..++++.+|+||.|+.... ++. +.
T Consensus 211 ~Gk~VlViG~G~IG~-~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~---vI~~~~ 285 (425)
T PRK05476 211 AGKVVVVAGYGDVGK-GCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKD---VITAEH 285 (425)
T ss_pred CCCEEEEECCCHHHH-HHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHH---HHHHHH
Confidence 357899999999998 4554322 12222 23447764 466788899999999985433 332 23
Q ss_pred ccccCCCCEEEEec---CCCcHHHHHh
Q psy6714 197 KPVFNESNLLISVA---GGVPIKNMEQ 220 (303)
Q Consensus 197 ~~~L~~g~IVVSia---aGV~ie~L~~ 220 (303)
...++++.+++..- .-++...|++
T Consensus 286 ~~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 286 MEAMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred HhcCCCCCEEEEcCCCCCccChHHHhh
Confidence 33466777776432 1234455554
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.23 Score=48.29 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=27.3
Q ss_pred HHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecC
Q psy6714 171 KEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAG 211 (303)
Q Consensus 171 ~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaa 211 (303)
.+.+.++|+||+|++.....++++.+.. .+..||+..+
T Consensus 71 ~~~~~~~DvVf~a~p~~~s~~~~~~~~~---~G~~vIDls~ 108 (349)
T PRK08664 71 PEAVDDVDIVFSALPSDVAGEVEEEFAK---AGKPVFSNAS 108 (349)
T ss_pred HHHhcCCCEEEEeCChhHHHHHHHHHHH---CCCEEEECCc
Confidence 3445789999999999877777765543 4566776654
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.25 Score=47.83 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=46.2
Q ss_pred CCCcEEEEcC-ChhhHHHHHHHHh------------hcH--HHHhh-----CCCeE--ecCh---HHhhcCCCEEEEeeC
Q psy6714 131 NRSDKQIAGT-TERGPGALIASLN------------IVS--KATGT-----MGAKI--TFDN---KEVTLNSEVIILAVK 185 (303)
Q Consensus 131 ~~mkIgIIGl-G~MG~~~La~al~------------r~~--e~l~e-----~Gv~v--~~d~---~eav~~ADIVILAVp 185 (303)
.|.||+|||+ |++|. .++..+. ... ....+ ....+ .++. .+.+++||+||++.-
T Consensus 7 ~~~KI~IiGaaG~VGs-~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQ-PLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCEEEEECCCCHHHH-HHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 5779999998 99999 4554321 100 00001 01222 2221 578899999999882
Q ss_pred -Ccc---------------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 -PHI---------------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 -P~~---------------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
|.. +.++++.+..+ ..+.+|+-..++++.
T Consensus 86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv 130 (321)
T PTZ00325 86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNS 130 (321)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHH
Confidence 221 12233344443 345677767777765
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.32 Score=48.45 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=35.1
Q ss_pred CCCcEEEEcCChhhHHHHHHHH-----------hhcHHH---H-hhCCCeE--ecChHHhhcCCCEEEEeeC
Q psy6714 131 NRSDKQIAGTTERGPGALIASL-----------NIVSKA---T-GTMGAKI--TFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al-----------~r~~e~---l-~e~Gv~v--~~d~~eav~~ADIVILAVp 185 (303)
...+++|||+|.||. .++..+ ++..++ + ..+|... ..+..+++.++|+||.|++
T Consensus 179 ~~~~VlViGaG~iG~-~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~ 249 (417)
T TIGR01035 179 KGKKALLIGAGEMGE-LVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTG 249 (417)
T ss_pred cCCEEEEECChHHHH-HHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCC
Confidence 457899999999998 444432 122222 2 2445432 2345677889999999995
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.23 Score=47.85 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=47.2
Q ss_pred CcEEEEcC-ChhhHHHHHHHHh------------hcHH-----HHhh--CCCeEe---cC--hHHhhcCCCEEEEeeC--
Q psy6714 133 SDKQIAGT-TERGPGALIASLN------------IVSK-----ATGT--MGAKIT---FD--NKEVTLNSEVIILAVK-- 185 (303)
Q Consensus 133 mkIgIIGl-G~MG~~~La~al~------------r~~e-----~l~e--~Gv~v~---~d--~~eav~~ADIVILAVp-- 185 (303)
|||+|||+ |++|. .++..+- .... .+.. ....+. .+ ..+.+++||+||++.-
T Consensus 1 ~KI~IIGaaG~VG~-~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~ 79 (310)
T cd01337 1 VKVAVLGAAGGIGQ-PLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP 79 (310)
T ss_pred CEEEEECCCCHHHH-HHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence 79999999 99999 4554321 1110 0111 112222 22 2577899999999872
Q ss_pred --Ccc------------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 --PHI------------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 --P~~------------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
|.. +.++.+.|.++ .++.+||-..+++++
T Consensus 80 ~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvDv 122 (310)
T cd01337 80 RKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPVNS 122 (310)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchhh
Confidence 322 22333445554 367778888888865
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.32 Score=47.04 Aligned_cols=83 Identities=20% Similarity=0.217 Sum_probs=48.7
Q ss_pred CcEEEEcCChhhHHHHHHHH-h-----------hcHHHH-------------hhCCCeEec-ChHHhhcCCCEEEEee--
Q psy6714 133 SDKQIAGTTERGPGALIASL-N-----------IVSKAT-------------GTMGAKITF-DNKEVTLNSEVIILAV-- 184 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al-~-----------r~~e~l-------------~e~Gv~v~~-d~~eav~~ADIVILAV-- 184 (303)
|||+|||.|.+|. .++..+ . ...+.+ ......+.. ..-+.++++|+|||+-
T Consensus 1 ~KVaviGaG~VG~-s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~ 79 (313)
T COG0039 1 MKVAVIGAGNVGS-SLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGV 79 (313)
T ss_pred CeEEEECCChHHH-HHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCC
Confidence 6899999999999 455442 1 111110 011233333 2346688999999988
Q ss_pred --CCc------------cHHHHHHhhccccCCCCEEEEecCCCcHHH
Q psy6714 185 --KPH------------IVPVALNDIKPVFNESNLLISVAGGVPIKN 217 (303)
Q Consensus 185 --pP~------------~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~ 217 (303)
||- .+.++.+++..+- ++.+|+-+.+++++-.
T Consensus 80 prKpGmtR~DLl~~Na~I~~~i~~~i~~~~-~d~ivlVvtNPvD~~t 125 (313)
T COG0039 80 PRKPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDAIVLVVTNPVDILT 125 (313)
T ss_pred CCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCeEEEEecCcHHHHH
Confidence 344 1233444555544 4556666778887643
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.31 Score=46.33 Aligned_cols=44 Identities=11% Similarity=0.300 Sum_probs=28.6
Q ss_pred HHhhcCCCEEEEeeC-Cc-c--------------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 171 KEVTLNSEVIILAVK-PH-I--------------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 171 ~eav~~ADIVILAVp-P~-~--------------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
.+.+++||+||++.. |. . +.++.+.|..+- ++.+||-..+++++
T Consensus 61 ~~~l~~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP~d~ 120 (300)
T cd00300 61 YADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNPVDI 120 (300)
T ss_pred HHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccChHHH
Confidence 567899999999994 22 1 445555666554 55566656666654
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.5 Score=47.69 Aligned_cols=64 Identities=14% Similarity=0.295 Sum_probs=41.0
Q ss_pred eEecChHHhhcCCCEEEEeeCCcc------------------------------------HHHHHHhhccccCCCCEEEE
Q psy6714 165 KITFDNKEVTLNSEVIILAVKPHI------------------------------------VPVALNDIKPVFNESNLLIS 208 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVpP~~------------------------------------v~~VL~eI~~~L~~g~IVVS 208 (303)
..++|..+++++||+||..+..-. +.++++.|..+ .++.++|.
T Consensus 63 ~~Ttdr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~-~pda~lin 141 (437)
T cd05298 63 VYTTDPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKY-SPDAWILN 141 (437)
T ss_pred EEECCHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHH-CCCeEEEE
Confidence 456888999999999999986443 22334444443 36677788
Q ss_pred ecCCCcH--HHHHhhCCCCCceEE
Q psy6714 209 VAGGVPI--KNMEQALPKNSRIIR 230 (303)
Q Consensus 209 iaaGV~i--e~L~~~l~~~~~VVr 230 (303)
.++++.. ..+.+.++. .+++.
T Consensus 142 ~tNP~~~vt~~~~~~~~~-~kviG 164 (437)
T cd05298 142 YSNPAAIVAEALRRLFPN-ARILN 164 (437)
T ss_pred ecCcHHHHHHHHHHHCCC-CCEEE
Confidence 8887765 344545553 34443
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.21 Score=48.15 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=43.7
Q ss_pred CCcEEEEcCChhhHHHHH-HH----------HhhcHHH---H----h-hCCCe--EecChHHhhcCCCEEEEeeCCccHH
Q psy6714 132 RSDKQIAGTTERGPGALI-AS----------LNIVSKA---T----G-TMGAK--ITFDNKEVTLNSEVIILAVKPHIVP 190 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La-~a----------l~r~~e~---l----~-e~Gv~--v~~d~~eav~~ADIVILAVpP~~v~ 190 (303)
.++|+|||+|.+|...+. .. ++++.++ + . ++|+. ...+.++++.++|+||.|++...
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~-- 209 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE-- 209 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC--
Confidence 468999999999983221 11 1222222 2 1 23554 35677888999999999998653
Q ss_pred HHHHhhccccCCCCEEEE
Q psy6714 191 VALNDIKPVFNESNLLIS 208 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVS 208 (303)
.++.. ..+++++.|..
T Consensus 210 p~i~~--~~l~~g~~v~~ 225 (330)
T PRK08291 210 PILKA--EWLHPGLHVTA 225 (330)
T ss_pred cEecH--HHcCCCceEEe
Confidence 33321 12456665543
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.22 Score=47.97 Aligned_cols=73 Identities=12% Similarity=0.148 Sum_probs=44.7
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcHHH-------Hh-hCCCeE--ecChHHhhcCCCEEEEeeCCccH
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVSKA-------TG-TMGAKI--TFDNKEVTLNSEVIILAVKPHIV 189 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~e~-------l~-e~Gv~v--~~d~~eav~~ADIVILAVpP~~v 189 (303)
..+++|||+|.+|.. .+..+ +++.++ +. .+|+.+ ..+.++++.+||+||.|++...
T Consensus 129 ~~~v~iiGaG~qA~~-~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~- 206 (326)
T TIGR02992 129 SSVVAIFGAGMQARL-QLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET- 206 (326)
T ss_pred CcEEEEECCCHHHHH-HHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC-
Confidence 457999999999973 22221 222222 21 235543 5677888999999999998643
Q ss_pred HHHHHhhccccCCCCEEEEe
Q psy6714 190 PVALNDIKPVFNESNLLISV 209 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSi 209 (303)
.++. ...++++++|..+
T Consensus 207 -p~i~--~~~l~~g~~i~~v 223 (326)
T TIGR02992 207 -PILH--AEWLEPGQHVTAM 223 (326)
T ss_pred -cEec--HHHcCCCcEEEee
Confidence 3332 1235677766543
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=92.85 E-value=2 Score=43.13 Aligned_cols=107 Identities=11% Similarity=0.144 Sum_probs=60.1
Q ss_pred cChHHhhcCCCEEEEeeCCccHHHHHHhhccc-cCCCCEEEEecCCCcHHHH-HhhC---CCCCceEEEecCcHH-----
Q psy6714 168 FDNKEVTLNSEVIILAVKPHIVPVALNDIKPV-FNESNLLISVAGGVPIKNM-EQAL---PKNSRIIRAMPNTPA----- 237 (303)
Q Consensus 168 ~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~-L~~g~IVVSiaaGV~ie~L-~~~l---~~~~~VVr~mPn~p~----- 237 (303)
.+.+++..+=|.+||||+.++..+||++|... |+.=+.||=++......-| +..+ ..+..|+.+-.-...
T Consensus 75 ~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d 154 (429)
T PF10100_consen 75 QDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSD 154 (429)
T ss_pred cCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceecc
Confidence 45667777889999999999999999987432 3222233312222222221 2222 223444444211110
Q ss_pred -----h-hhCC--cEEEEeCCCCCHHHHHHHHHHHHhcCCcE-EcC
Q psy6714 238 -----L-VRQG--ASVFVRGSSASDQDAQTVINLFKSVGTCE-EVP 274 (303)
Q Consensus 238 -----~-v~~G--~til~~g~~~~~e~~e~V~~Lfs~iG~~v-~vd 274 (303)
. +-.| .-++.+..+.+.....++..+|+.+|..+ .++
T Consensus 155 ~~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~ 200 (429)
T PF10100_consen 155 GEQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMD 200 (429)
T ss_pred CCCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeC
Confidence 0 0111 12444555667788899999999999754 444
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.43 Score=48.68 Aligned_cols=84 Identities=10% Similarity=0.171 Sum_probs=53.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCCccH--HHHHHhh
Q psy6714 132 RSDKQIAGTTERGPGALIASLN----------IVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKPHIV--PVALNDI 196 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v--~~VL~eI 196 (303)
..+++|+|+|.||. .++..++ .... .....|+.+ .+..++++.+|+||.++....+ .+.+.
T Consensus 254 GKtVvViGyG~IGr-~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~v-v~leEal~~ADVVI~tTGt~~vI~~e~L~-- 329 (477)
T PLN02494 254 GKVAVICGYGDVGK-GCAAAMKAAGARVIVTEIDPICALQALMEGYQV-LTLEDVVSEADIFVTTTGNKDIIMVDHMR-- 329 (477)
T ss_pred CCEEEEECCCHHHH-HHHHHHHHCCCEEEEEeCCchhhHHHHhcCCee-ccHHHHHhhCCEEEECCCCccchHHHHHh--
Confidence 57899999999999 4554432 1221 233557765 3567888999999998764443 33443
Q ss_pred ccccCCCCEEEEecC---CCcHHHHHhh
Q psy6714 197 KPVFNESNLLISVAG---GVPIKNMEQA 221 (303)
Q Consensus 197 ~~~L~~g~IVVSiaa---GV~ie~L~~~ 221 (303)
.++++.+|+.+.- -|+...|.+.
T Consensus 330 --~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 330 --KMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred --cCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 3557778876543 2445566654
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.39 Score=48.17 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=38.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHH-----------hhcHHHH----hhCCCeE--ecChHHhhcCCCEEEEeeC
Q psy6714 131 NRSDKQIAGTTERGPGALIASL-----------NIVSKAT----GTMGAKI--TFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al-----------~r~~e~l----~e~Gv~v--~~d~~eav~~ADIVILAVp 185 (303)
...++.|||.|-||. ..+..+ |++.+++ .++|+.+ ..+..+.+.++||||.|+-
T Consensus 177 ~~~~vlvIGAGem~~-lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs 247 (414)
T COG0373 177 KDKKVLVIGAGEMGE-LVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS 247 (414)
T ss_pred ccCeEEEEcccHHHH-HHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC
Confidence 457899999999998 455442 4444443 4667543 3455678899999999984
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.27 Score=49.14 Aligned_cols=74 Identities=11% Similarity=0.141 Sum_probs=42.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcHH---------------------HHhh---CCCeEecChHHhhc--CCCEEEEeeC
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVSK---------------------ATGT---MGAKITFDNKEVTL--NSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~e---------------------~l~e---~Gv~v~~d~~eav~--~ADIVILAVp 185 (303)
++||||||+|.||.+ ++..+.+..+ +... .+..++.|..++++ +.|+|+.|+.
T Consensus 3 ~i~VgiiG~G~VG~~-~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg 81 (426)
T PRK06349 3 PLKVGLLGLGTVGSG-VVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMG 81 (426)
T ss_pred eEEEEEEeeCHHHHH-HHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCC
Confidence 478999999999995 4443322211 1111 12234566777775 4699999986
Q ss_pred CccH-HHHHHhhccccCCCCEEEEe
Q psy6714 186 PHIV-PVALNDIKPVFNESNLLISV 209 (303)
Q Consensus 186 P~~v-~~VL~eI~~~L~~g~IVVSi 209 (303)
+... .+.+. ..+..|+-||+.
T Consensus 82 ~~~~~~~~~~---~aL~~GkhVVta 103 (426)
T PRK06349 82 GIEPARELIL---KALEAGKHVVTA 103 (426)
T ss_pred CchHHHHHHH---HHHHCCCeEEEc
Confidence 5322 23332 334466667754
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.11 Score=46.98 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=40.6
Q ss_pred CCCcEEEEcCChhhHHHHHHHH-------------hhcHHHHh--hCCCeE--ecChHHhhc--CCCEEEEeeCCccHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASL-------------NIVSKATG--TMGAKI--TFDNKEVTL--NSEVIILAVKPHIVPV 191 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al-------------~r~~e~l~--e~Gv~v--~~d~~eav~--~ADIVILAVpP~~v~~ 191 (303)
++-++.|||.|++|.+ |+... +...+..- -.++.+ .++.+..++ +.|+.|||||.....+
T Consensus 83 ~~tnviiVG~GnlG~A-ll~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~ 161 (211)
T COG2344 83 KTTNVIIVGVGNLGRA-LLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEHAQE 161 (211)
T ss_pred cceeEEEEccChHHHH-HhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHHHHH
Confidence 4668999999999994 55431 11112110 112332 234445555 7899999999888887
Q ss_pred HHHhhc
Q psy6714 192 ALNDIK 197 (303)
Q Consensus 192 VL~eI~ 197 (303)
+++.|.
T Consensus 162 vad~Lv 167 (211)
T COG2344 162 VADRLV 167 (211)
T ss_pred HHHHHH
Confidence 776653
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.55 Score=47.55 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=40.7
Q ss_pred CeEecChHHhhcCCCEEEEeeC----Ccc------------HHHHHHhhccccCCCCEEEEecCCCcHHH--HHhhCCC-
Q psy6714 164 AKITFDNKEVTLNSEVIILAVK----PHI------------VPVALNDIKPVFNESNLLISVAGGVPIKN--MEQALPK- 224 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVp----P~~------------v~~VL~eI~~~L~~g~IVVSiaaGV~ie~--L~~~l~~- 224 (303)
+.+..+..+.+++|||||++-- |.. +.++.+.|..+..++.+||-+.+++++-. +.+..+.
T Consensus 164 v~i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~sg~~ 243 (444)
T PLN00112 164 VSIGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKNAPNI 243 (444)
T ss_pred eEEecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHHcCCC
Confidence 4444566678999999999872 221 34455556663345666666777777643 2232211
Q ss_pred CCceEEEecC
Q psy6714 225 NSRIIRAMPN 234 (303)
Q Consensus 225 ~~~VVr~mPn 234 (303)
..+++.+...
T Consensus 244 ~~rViGtgT~ 253 (444)
T PLN00112 244 PAKNFHALTR 253 (444)
T ss_pred CcceEEeecc
Confidence 1356665544
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.26 Score=43.37 Aligned_cols=71 Identities=18% Similarity=0.154 Sum_probs=43.5
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCC
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNES 203 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g 203 (303)
+...+|.|||.|.|.+..++.. +.+.|+.+ . .+..+.+.++|+||.|+....+ +-.+ .++++
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~-------L~~~g~~V~v~~r~~~~l~~~l~~aDiVIsat~~~~i--i~~~---~~~~~ 109 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAAL-------LLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPGL--VKGD---MVKPG 109 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHH-------HhhCCCEEEEEECCchhHHHHHhhCCEEEEcCCCCce--ecHH---HccCC
Confidence 4568999999999844234433 33344322 1 3455678999999999975433 1122 24456
Q ss_pred CEEEEecCC
Q psy6714 204 NLLISVAGG 212 (303)
Q Consensus 204 ~IVVSiaaG 212 (303)
.+||.+...
T Consensus 110 ~viIDla~p 118 (168)
T cd01080 110 AVVIDVGIN 118 (168)
T ss_pred eEEEEccCC
Confidence 778866443
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.27 Score=47.00 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=28.2
Q ss_pred HHhhcCCCEEEEeeC-Cc----c-----------HHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 171 KEVTLNSEVIILAVK-PH----I-----------VPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 171 ~eav~~ADIVILAVp-P~----~-----------v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
.+.+++||+||+|+- |. . +.++++.|..+. ++.+||-..+.++.-
T Consensus 67 ~~~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd~~ 127 (309)
T cd05294 67 LSDVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVDVM 127 (309)
T ss_pred HHHhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHHH
Confidence 456899999999994 11 1 344455566554 444556566766653
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.63 Score=46.66 Aligned_cols=73 Identities=10% Similarity=0.169 Sum_probs=46.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----------hc---HHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHH-hhc
Q psy6714 132 RSDKQIAGTTERGPGALIASLN----------IV---SKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALN-DIK 197 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~----------r~---~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~-eI~ 197 (303)
..+++|+|.|.||. .++..++ .. .+.+...|+.+. +..++++.+|+||.|+.... ++. ...
T Consensus 202 GktVvViG~G~IG~-~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~---~i~~~~l 276 (413)
T cd00401 202 GKVAVVAGYGDVGK-GCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKD---IITGEHF 276 (413)
T ss_pred CCEEEEECCCHHHH-HHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHH---HHHHHHH
Confidence 56899999999998 3443322 11 123456788643 45678889999999986433 222 223
Q ss_pred cccCCCCEEEEe
Q psy6714 198 PVFNESNLLISV 209 (303)
Q Consensus 198 ~~L~~g~IVVSi 209 (303)
..++++.+|+.+
T Consensus 277 ~~mk~Ggilvnv 288 (413)
T cd00401 277 EQMKDGAIVCNI 288 (413)
T ss_pred hcCCCCcEEEEe
Confidence 346677777644
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.37 Score=46.68 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=32.7
Q ss_pred eEecChHHhhcCCCEEEEeeC----Ccc------------HHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 165 KITFDNKEVTLNSEVIILAVK----PHI------------VPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVp----P~~------------v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
.+..+..+.+++|||||++-- |.. +.++.++|..+-.++.+||-..++++.-
T Consensus 68 ~i~~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~ 135 (323)
T TIGR01759 68 VATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTN 135 (323)
T ss_pred EEecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHH
Confidence 344455677899999999872 221 3445556666543366666677777653
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.67 Score=46.44 Aligned_cols=96 Identities=16% Similarity=0.228 Sum_probs=57.9
Q ss_pred CcEEEEcCChhhHHHHHHH---------------Hhhc-HHHH-----------hhCC----CeEecChHHhhcCCCEEE
Q psy6714 133 SDKQIAGTTERGPGALIAS---------------LNIV-SKAT-----------GTMG----AKITFDNKEVTLNSEVII 181 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~a---------------l~r~-~e~l-----------~e~G----v~v~~d~~eav~~ADIVI 181 (303)
|||.|||.|..-++.|... ++.+ .+++ ++.| +..++|..+++++||+||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi 80 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF 80 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 7999999998766434332 1222 3332 2334 245678899999999999
Q ss_pred EeeCCc------------------------------------cHHHHHHhhccccCCCCEEEEecCCCcH--HHHHhhCC
Q psy6714 182 LAVKPH------------------------------------IVPVALNDIKPVFNESNLLISVAGGVPI--KNMEQALP 223 (303)
Q Consensus 182 LAVpP~------------------------------------~v~~VL~eI~~~L~~g~IVVSiaaGV~i--e~L~~~l~ 223 (303)
.+...- .+.++++.+.++ .++.++|..++++.+ ..+.+..+
T Consensus 81 ~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~-~Pda~lin~TNP~~ivt~a~~k~~~ 159 (419)
T cd05296 81 TQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEEL-APDAWLINFTNPAGIVTEAVLRHTG 159 (419)
T ss_pred EEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHH-CCCeEEEEecCHHHHHHHHHHHhcc
Confidence 998422 122333444443 367778888887765 34444442
Q ss_pred CCCceEEE
Q psy6714 224 KNSRIIRA 231 (303)
Q Consensus 224 ~~~~VVr~ 231 (303)
.+++.+
T Consensus 160 --~rviGl 165 (419)
T cd05296 160 --DRVIGL 165 (419)
T ss_pred --CCEEee
Confidence 355555
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.4 Score=45.83 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=44.4
Q ss_pred cCCCcEEEEcCChh-hHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEeeC-CccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTTER-GPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG~M-G~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||.|.+ |.+ |+..+ ...|.++ +.+..+.+++||+||.+++ |..+.. +.++
T Consensus 156 l~Gk~vvViGrs~iVGkP-la~lL-------~~~~atVt~~hs~t~~l~~~~~~ADIVV~avG~~~~i~~------~~ik 221 (285)
T PRK14189 156 LRGAHAVVIGRSNIVGKP-MAMLL-------LQAGATVTICHSKTRDLAAHTRQADIVVAAVGKRNVLTA------DMVK 221 (285)
T ss_pred CCCCEEEEECCCCccHHH-HHHHH-------HHCCCEEEEecCCCCCHHHHhhhCCEEEEcCCCcCccCH------HHcC
Confidence 34678999998887 886 44332 2234433 2356678999999999996 443322 4567
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
++.+||.+
T Consensus 222 ~gavVIDV 229 (285)
T PRK14189 222 PGATVIDV 229 (285)
T ss_pred CCCEEEEc
Confidence 88888865
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.67 Score=40.80 Aligned_cols=83 Identities=14% Similarity=0.215 Sum_probs=48.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh----------cHHH---HhhCCCeEecChHHhhcCCCEEEEeeCCccH--HHHHHhh
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI----------VSKA---TGTMGAKITFDNKEVTLNSEVIILAVKPHIV--PVALNDI 196 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r----------~~e~---l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v--~~VL~eI 196 (303)
.+++.|+|.|.+|.+ ++..++. ++-+ +...|+.+ .+..+++..+|++|.++-...+ .+-+.+
T Consensus 23 Gk~vvV~GYG~vG~g-~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v-~~~~~a~~~adi~vtaTG~~~vi~~e~~~~- 99 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKG-IARALRGLGARVTVTEIDPIRALQAAMDGFEV-MTLEEALRDADIFVTATGNKDVITGEHFRQ- 99 (162)
T ss_dssp TSEEEEE--SHHHHH-HHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EE-E-HHHHTTT-SEEEE-SSSSSSB-HHHHHH-
T ss_pred CCEEEEeCCCcccHH-HHHHHhhCCCEEEEEECChHHHHHhhhcCcEe-cCHHHHHhhCCEEEECCCCccccCHHHHHH-
Confidence 468999999999995 6665432 2222 23458876 4678899999999999965543 344555
Q ss_pred ccccCCCCEEEEecCCC----cHHHHHhh
Q psy6714 197 KPVFNESNLLISVAGGV----PIKNMEQA 221 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV----~ie~L~~~ 221 (303)
++++.+|. -++.. +++.|++.
T Consensus 100 ---mkdgail~-n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 100 ---MKDGAILA-NAGHFDVEIDVDALEAN 124 (162)
T ss_dssp ---S-TTEEEE-ESSSSTTSBTHHHHHTC
T ss_pred ---hcCCeEEe-ccCcCceeEeecccccc
Confidence 44666554 44443 44566554
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.52 Score=44.61 Aligned_cols=85 Identities=21% Similarity=0.221 Sum_probs=56.4
Q ss_pred CCcEEEEcC-ChhhHHHHHHHHhhcH------------H--------HH---hhCCCeEecChHHhhcCCCEEEEeeCCc
Q psy6714 132 RSDKQIAGT-TERGPGALIASLNIVS------------K--------AT---GTMGAKITFDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 132 ~mkIgIIGl-G~MG~~~La~al~r~~------------e--------~l---~e~Gv~v~~d~~eav~~ADIVILAVpP~ 187 (303)
+|||+|.|. |.||. .+........ . .+ ...|+.+..+...+..++|++|=-+.|.
T Consensus 2 ~iki~V~Ga~GRMG~-~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~P~ 80 (266)
T COG0289 2 MIKVAVAGASGRMGR-TLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTTPE 80 (266)
T ss_pred CceEEEEcCCChHHH-HHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCCch
Confidence 789999995 99999 5666533211 0 11 2345666666666778999999999898
Q ss_pred cHHHHHHhhccccCCCCEEEEecCCCcHHHHHh
Q psy6714 188 IVPVALNDIKPVFNESNLLISVAGGVPIKNMEQ 220 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~ 220 (303)
...+.++-...+ +-.+|| -..|.+-+.++.
T Consensus 81 ~~~~~l~~~~~~--~~~lVI-GTTGf~~e~~~~ 110 (266)
T COG0289 81 ATLENLEFALEH--GKPLVI-GTTGFTEEQLEK 110 (266)
T ss_pred hhHHHHHHHHHc--CCCeEE-ECCCCCHHHHHH
Confidence 888887654432 223555 445787765544
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.4 Score=47.69 Aligned_cols=53 Identities=15% Similarity=0.124 Sum_probs=33.8
Q ss_pred CeEecChHHhhcCCCEEEEeeC----Cc-c-----------HHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 164 AKITFDNKEVTLNSEVIILAVK----PH-I-----------VPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVp----P~-~-----------v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
+.+..+..+.+++|||||++-- |. . +.++.+.|..+-+++.+||-+.+++++-
T Consensus 108 v~i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~ 176 (387)
T TIGR01757 108 VSIGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTN 176 (387)
T ss_pred eEEecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHH
Confidence 4445566678999999999762 22 2 3444455666554666666677777764
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.59 Score=35.96 Aligned_cols=64 Identities=17% Similarity=0.321 Sum_probs=35.4
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcHHHHhhC-CCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEE
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIVSKATGTM-GAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLIS 208 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~~e~l~e~-Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVS 208 (303)
+..++++|+|.|.+|.+ ++..+ .+. +.++.-.+. |++|-|++...+..-- .+. .++++.+|+.
T Consensus 21 ~~~~~v~i~G~G~~g~~-~a~~l-------~~~~~~~v~v~~r------di~i~~~~~~~~~~~~-~~~-~~~~~~~v~~ 84 (86)
T cd05191 21 LKGKTVVVLGAGEVGKG-IAKLL-------ADEGGKKVVLCDR------DILVTATPAGVPVLEE-ATA-KINEGAVVID 84 (86)
T ss_pred CCCCEEEEECCCHHHHH-HHHHH-------HHcCCCEEEEEcC------CEEEEcCCCCCCchHH-HHH-hcCCCCEEEe
Confidence 34678999999999994 43332 222 222211111 9999999754433210 122 2346777775
Q ss_pred e
Q psy6714 209 V 209 (303)
Q Consensus 209 i 209 (303)
+
T Consensus 85 ~ 85 (86)
T cd05191 85 L 85 (86)
T ss_pred c
Confidence 4
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.8 Score=41.88 Aligned_cols=74 Identities=12% Similarity=0.169 Sum_probs=46.0
Q ss_pred CcEEEEcCChhhHHHHHHHHhh----------cHHHH----h-hCCCeEe---cCh----HHh-hcCCCEEEEeeCCccH
Q psy6714 133 SDKQIAGTTERGPGALIASLNI----------VSKAT----G-TMGAKIT---FDN----KEV-TLNSEVIILAVKPHIV 189 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~r----------~~e~l----~-e~Gv~v~---~d~----~ea-v~~ADIVILAVpP~~v 189 (303)
|+|.|||+|.+|. .++..+.. +.++. . +.+..+. .+. .++ +.++|+++.++..+.+
T Consensus 1 m~iiIiG~G~vG~-~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~ 79 (225)
T COG0569 1 MKIIIIGAGRVGR-SVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV 79 (225)
T ss_pred CEEEEECCcHHHH-HHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence 7899999999999 57765422 22222 2 2333221 222 233 5689999999999888
Q ss_pred HHHHHhhccc-cCCCCEEE
Q psy6714 190 PVALNDIKPV-FNESNLLI 207 (303)
Q Consensus 190 ~~VL~eI~~~-L~~g~IVV 207 (303)
..++..+... +.-..+|.
T Consensus 80 N~i~~~la~~~~gv~~via 98 (225)
T COG0569 80 NSVLALLALKEFGVPRVIA 98 (225)
T ss_pred HHHHHHHHHHhcCCCcEEE
Confidence 8888776533 43334444
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.31 Score=47.57 Aligned_cols=75 Identities=12% Similarity=0.107 Sum_probs=44.9
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhh-cHH---------------HHhhCC---CeEec--ChHHhhcCCCEEEEeeCCccH
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNI-VSK---------------ATGTMG---AKITF--DNKEVTLNSEVIILAVKPHIV 189 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r-~~e---------------~l~e~G---v~v~~--d~~eav~~ADIVILAVpP~~v 189 (303)
+++|||+| +|.+|.- |...+.+ ... +..+++ +.+.. ......+++|++|.|.+...-
T Consensus 1 ~~~VavvGATG~VG~~-~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s 79 (334)
T COG0136 1 KLNVAVLGATGAVGQV-LLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVS 79 (334)
T ss_pred CcEEEEEeccchHHHH-HHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHH
Confidence 47899998 9999994 4433322 210 111111 11212 122345689999999987777
Q ss_pred HHHHHhhccccCCCCEEEEec
Q psy6714 190 PVALNDIKPVFNESNLLISVA 210 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSia 210 (303)
+++...+.. .|.+||+-+
T Consensus 80 ~~~~p~~~~---~G~~VIdns 97 (334)
T COG0136 80 KEVEPKAAE---AGCVVIDNS 97 (334)
T ss_pred HHHHHHHHH---cCCEEEeCC
Confidence 777776653 566777543
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.38 Score=48.13 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=36.0
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH-----------hhcHHH---H-hhCC-CeE--ecChHHhhcCCCEEEEeeC
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL-----------NIVSKA---T-GTMG-AKI--TFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al-----------~r~~e~---l-~e~G-v~v--~~d~~eav~~ADIVILAVp 185 (303)
+..+||.|||+|.||. .++..+ +++.++ + .++| ..+ ..+..+.+.++|+||.|+.
T Consensus 179 l~~kkvlviGaG~~a~-~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~ 251 (414)
T PRK13940 179 ISSKNVLIIGAGQTGE-LLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVN 251 (414)
T ss_pred ccCCEEEEEcCcHHHH-HHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcC
Confidence 4567899999999999 444432 233332 2 2344 332 2444677889999999996
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.15 Score=45.93 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=15.1
Q ss_pred CCcEEEEcCChhhHHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIAS 151 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a 151 (303)
..+|+|||+|.+|. .++..
T Consensus 84 ~~rV~IIGaG~iG~-~l~~~ 102 (213)
T PRK05472 84 TWNVALVGAGNLGR-ALLNY 102 (213)
T ss_pred CcEEEEECCCHHHH-HHHHh
Confidence 35799999999999 56543
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.71 Score=45.54 Aligned_cols=63 Identities=13% Similarity=0.138 Sum_probs=39.8
Q ss_pred CcEEEEcCChhhHHHHHHHHhh----------cHH---HHhh-CCCeEe-c---C---hHHh-hcCCCEEEEeeCCccHH
Q psy6714 133 SDKQIAGTTERGPGALIASLNI----------VSK---ATGT-MGAKIT-F---D---NKEV-TLNSEVIILAVKPHIVP 190 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~r----------~~e---~l~e-~Gv~v~-~---d---~~ea-v~~ADIVILAVpP~~v~ 190 (303)
|+|.|+|.|.+|. .++..+.. ..+ .+.+ .|+.+. . + ..++ ++++|.||++++.....
T Consensus 1 m~viIiG~G~ig~-~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~n 79 (453)
T PRK09496 1 MKIIIVGAGQVGY-TLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDETN 79 (453)
T ss_pred CEEEEECCCHHHH-HHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHHH
Confidence 7899999999999 56665321 222 2333 455432 1 1 1233 67899999999887776
Q ss_pred HHHHhh
Q psy6714 191 VALNDI 196 (303)
Q Consensus 191 ~VL~eI 196 (303)
.++...
T Consensus 80 ~~~~~~ 85 (453)
T PRK09496 80 MVACQI 85 (453)
T ss_pred HHHHHH
Confidence 655333
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=91.23 E-value=2.2 Score=42.88 Aligned_cols=66 Identities=6% Similarity=0.139 Sum_probs=43.1
Q ss_pred eEecChHHhhcCCCEEEEeeCCccHH------------------------------------HHHHhhccccCCCCEEEE
Q psy6714 165 KITFDNKEVTLNSEVIILAVKPHIVP------------------------------------VALNDIKPVFNESNLLIS 208 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVpP~~v~------------------------------------~VL~eI~~~L~~g~IVVS 208 (303)
..++|.++++++||+||..+..-..+ ++++.|..+ .++.++|.
T Consensus 63 ~~ttD~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~-~P~a~lin 141 (425)
T cd05197 63 EKTMDLEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKL-SPDAWYLN 141 (425)
T ss_pred EEeCCHHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHh-CCCcEEEe
Confidence 45788999999999999998644332 333444443 36777888
Q ss_pred ecCCCcH--HHHHhhCCCCCceEEEe
Q psy6714 209 VAGGVPI--KNMEQALPKNSRIIRAM 232 (303)
Q Consensus 209 iaaGV~i--e~L~~~l~~~~~VVr~m 232 (303)
.++++.+ ..+.+.++. .+++.+-
T Consensus 142 ~TNP~di~t~a~~~~~p~-~rviG~c 166 (425)
T cd05197 142 FTNPAGEVTEAVRRYVPP-EKAVGLC 166 (425)
T ss_pred cCChHHHHHHHHHHhCCC-CcEEEEC
Confidence 8887765 345555542 4565553
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.66 Score=44.91 Aligned_cols=37 Identities=8% Similarity=0.138 Sum_probs=26.4
Q ss_pred HhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecC
Q psy6714 172 EVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAG 211 (303)
Q Consensus 172 eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaa 211 (303)
+...++|+||+|+|.....++...+.. .|..||...+
T Consensus 69 ~~~~~~DvVf~a~p~~~s~~~~~~~~~---~G~~VIDlsg 105 (341)
T TIGR00978 69 VASKDVDIVFSALPSEVAEEVEPKLAE---AGKPVFSNAS 105 (341)
T ss_pred HHhccCCEEEEeCCHHHHHHHHHHHHH---CCCEEEECCh
Confidence 345789999999999988877765533 4555665543
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.65 E-value=0.72 Score=44.03 Aligned_cols=66 Identities=21% Similarity=0.391 Sum_probs=44.4
Q ss_pred cCCCcEEEEcCChh-hHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTTER-GPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG~M-G~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||-+++ |.++..+.+ ..+.++ + .+..+.+++|||||.|| +|..+. .+.++
T Consensus 154 l~Gk~~vVVGrS~iVGkPla~lL~--------~~naTVtvcHs~T~~l~~~~k~ADIvv~AvG~p~~i~------~d~vk 219 (283)
T COG0190 154 LRGKNVVVVGRSNIVGKPLALLLL--------NANATVTVCHSRTKDLASITKNADIVVVAVGKPHFIK------ADMVK 219 (283)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHH--------hCCCEEEEEcCCCCCHHHHhhhCCEEEEecCCccccc------ccccc
Confidence 34678999998866 555333222 234433 2 46778899999999999 577665 44567
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 220 ~gavVIDV 227 (283)
T COG0190 220 PGAVVIDV 227 (283)
T ss_pred CCCEEEec
Confidence 88888754
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.48 E-value=2.8 Score=41.41 Aligned_cols=64 Identities=8% Similarity=-0.003 Sum_probs=35.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcH----------HHHhhCCC---eEecChHHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVS----------KATGTMGA---KITFDNKEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~----------e~l~e~Gv---~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
..+|+|||+|.+|. ++++.+++.. ..+...+. ....+...+.+++|+||++.....-.+.+++.
T Consensus 3 ~~~i~iiGlG~~G~-slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A 79 (418)
T PRK00683 3 LQRVVVLGLGVTGK-SIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAA 79 (418)
T ss_pred CCeEEEEEECHHHH-HHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHH
Confidence 35799999999999 5776654321 00000000 01122233346789888887544445555444
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=90.40 E-value=0.5 Score=39.53 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=35.7
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH-----------hhcHHHHh----hC---CCe--EecChHHhhcCCCEEEEeeCCc
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL-----------NIVSKATG----TM---GAK--ITFDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al-----------~r~~e~l~----e~---Gv~--v~~d~~eav~~ADIVILAVpP~ 187 (303)
+...++.|||.|.||.+ ++..+ +|+.+++. .+ .+. ...+..+.+.++|+||-|++..
T Consensus 10 l~~~~vlviGaGg~ar~-v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARA-VAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSG 86 (135)
T ss_dssp GTTSEEEEESSSHHHHH-HHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTT
T ss_pred cCCCEEEEECCHHHHHH-HHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCC
Confidence 45688999999999994 44332 33333322 22 232 2345556788999999999743
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=90.35 E-value=1.8 Score=42.36 Aligned_cols=83 Identities=10% Similarity=0.164 Sum_probs=49.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh-------------cHHH----HhhCCCeEecChHHhhcCCCEEEEeeCC----ccHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI-------------VSKA----TGTMGAKITFDNKEVTLNSEVIILAVKP----HIVP 190 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r-------------~~e~----l~e~Gv~v~~d~~eav~~ADIVILAVpP----~~v~ 190 (303)
..||||||+ .||. ..+..+.. ..++ .+++|+....|.++++++.|+++++++. ..=.
T Consensus 3 ~~rVgViG~-~~G~-~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~ 80 (343)
T TIGR01761 3 VQSVVVCGT-RFGQ-FYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGS 80 (343)
T ss_pred CcEEEEEeH-HHHH-HHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHH
Confidence 578999999 6786 34433221 1122 3467887778899999888999998852 2323
Q ss_pred HHHHhhccccCCCCEEEEecCCCcHHHHHh
Q psy6714 191 VALNDIKPVFNESNLLISVAGGVPIKNMEQ 220 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~ 220 (303)
++.... +..|+-|+ +-..+..++.++
T Consensus 81 e~a~~a---L~aGkHVL-~EKPla~~Ea~e 106 (343)
T TIGR01761 81 ALARAL---LARGIHVL-QEHPLHPRDIQD 106 (343)
T ss_pred HHHHHH---HhCCCeEE-EcCCCCHHHHHH
Confidence 444333 33555555 334444444444
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.71 Score=44.73 Aligned_cols=80 Identities=11% Similarity=0.138 Sum_probs=45.6
Q ss_pred CcEEEEcC-ChhhHHHHHHHHh------------hcH--H---HHhh--CCCeEe-----cChHHhhcCCCEEEEeeC--
Q psy6714 133 SDKQIAGT-TERGPGALIASLN------------IVS--K---ATGT--MGAKIT-----FDNKEVTLNSEVIILAVK-- 185 (303)
Q Consensus 133 mkIgIIGl-G~MG~~~La~al~------------r~~--e---~l~e--~Gv~v~-----~d~~eav~~ADIVILAVp-- 185 (303)
.||+|||+ |++|. .++..+- ... . .+.. ....+. ++..+++++||+||++--
T Consensus 19 ~KV~IiGaaG~VG~-~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~~ 97 (323)
T PLN00106 19 FKVAVLGAAGGIGQ-PLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVP 97 (323)
T ss_pred CEEEEECCCCHHHH-HHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCCC
Confidence 58999998 99999 4554321 111 0 0100 011221 223678999999999872
Q ss_pred --C-ccHHHHH-----------HhhccccCCCCEEEEecCCCc
Q psy6714 186 --P-HIVPVAL-----------NDIKPVFNESNLLISVAGGVP 214 (303)
Q Consensus 186 --P-~~v~~VL-----------~eI~~~L~~g~IVVSiaaGV~ 214 (303)
| ..-.+++ +.+..+- ++.+||-..++++
T Consensus 98 ~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPvD 139 (323)
T PLN00106 98 RKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPVN 139 (323)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCcc
Confidence 2 1233333 3344332 5667787888887
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=90.07 E-value=0.84 Score=44.00 Aligned_cols=44 Identities=9% Similarity=0.225 Sum_probs=29.2
Q ss_pred HHhhcCCCEEEEeeC----Cc-c-----------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 171 KEVTLNSEVIILAVK----PH-I-----------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 171 ~eav~~ADIVILAVp----P~-~-----------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
.+.+++||+||++.- |. . +.++.+.|..+ .++.+||-+.++++.
T Consensus 62 ~~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPvDv 121 (312)
T TIGR01772 62 ENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPVNS 121 (312)
T ss_pred HHHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCchhh
Confidence 578999999999873 21 1 22333445544 367778888888874
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=90.03 E-value=0.74 Score=44.94 Aligned_cols=23 Identities=4% Similarity=0.082 Sum_probs=17.9
Q ss_pred CeEecChHHhhcCCCEEEEeeCC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVKP 186 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVpP 186 (303)
+.+..+..+++.++|+|+.|++.
T Consensus 63 l~v~g~~eeLl~~vDiVve~Tp~ 85 (333)
T TIGR01546 63 IEVAGTLEDLLEKVDIVVDATPG 85 (333)
T ss_pred eEecCCHHHHhhcCCEEEECCCC
Confidence 33445678888999999999974
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.61 Score=45.30 Aligned_cols=74 Identities=11% Similarity=0.112 Sum_probs=45.8
Q ss_pred cEEEEc-CChhhHHHHHHHHhh--cHH-H-------------HhhCCCe--EecChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 134 DKQIAG-TTERGPGALIASLNI--VSK-A-------------TGTMGAK--ITFDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 134 kIgIIG-lG~MG~~~La~al~r--~~e-~-------------l~e~Gv~--v~~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
||+||| .|..|. .|+..+.. ... . +...|.. +..-..+.++++|+||+|++...-.+++.
T Consensus 1 ~VaIvGAtG~vG~-eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~s~~~a~ 79 (339)
T TIGR01296 1 NVAIVGATGAVGQ-EMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSVSKEFAP 79 (339)
T ss_pred CEEEEcCCCHHHH-HHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHHHHHHHH
Confidence 689999 999999 56655433 111 0 1111221 11112344588999999999998888877
Q ss_pred hhccccCCCCEEEEecC
Q psy6714 195 DIKPVFNESNLLISVAG 211 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaa 211 (303)
.+.. .|..||+..+
T Consensus 80 ~~~~---~G~~VID~ss 93 (339)
T TIGR01296 80 KAAK---CGAIVIDNTS 93 (339)
T ss_pred HHHH---CCCEEEECCH
Confidence 6543 5667786654
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >COG4408 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.91 E-value=5.9 Score=39.07 Aligned_cols=104 Identities=19% Similarity=0.244 Sum_probs=63.6
Q ss_pred cChHHhhcCCCEEEEeeCCccHHHHHHhhcc-ccC--CCCEEEEecCCCc--HHHHHhhCCCCCceEEE-----------
Q psy6714 168 FDNKEVTLNSEVIILAVKPHIVPVALNDIKP-VFN--ESNLLISVAGGVP--IKNMEQALPKNSRIIRA----------- 231 (303)
Q Consensus 168 ~d~~eav~~ADIVILAVpP~~v~~VL~eI~~-~L~--~g~IVVSiaaGV~--ie~L~~~l~~~~~VVr~----------- 231 (303)
.+.+++..+=|-+|+||+.++.-+|+++|-- .|+ +..++||-.=|.. ++.+-..++.+..|+.+
T Consensus 77 kd~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~~daeViS~SsY~~dTk~id 156 (431)
T COG4408 77 KDLAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSNLLVQNLMNKAGRDAEVISLSSYYADTKYID 156 (431)
T ss_pred hhHHHhhchhheEEEEeecHHHHHHHhcCCHhHhccccEEEEecccccccHHHHHHHhhhCCCceEEEeehhcccceeec
Confidence 4677788889999999999999999988632 222 3345555433333 23332223323334333
Q ss_pred --ecCcHH--hhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEc
Q psy6714 232 --MPNTPA--LVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEV 273 (303)
Q Consensus 232 --mPn~p~--~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~v 273 (303)
-||+.- ++.+. ++.+....+....+.+..+|...|..+++
T Consensus 157 ~~~p~~alTkavKkr--iYlgs~~~ns~~~e~l~~v~aq~~I~v~~ 200 (431)
T COG4408 157 AEQPNRALTKAVKKR--IYLGSQHGNSGSAEMLTAVLAQHGIDVEP 200 (431)
T ss_pred ccCcchHHHHHHhHh--eeeccCCCCChHHHHHHHHHHhcCCceEE
Confidence 144432 23332 44455566677788999999999986554
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=89.89 E-value=1.2 Score=42.75 Aligned_cols=82 Identities=13% Similarity=0.231 Sum_probs=54.4
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhc--HH------H--H-hhCCCeEecChHHhhcC--CCEEEEeeCCccHHHHHHhhc
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIV--SK------A--T-GTMGAKITFDNKEVTLN--SEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~--~e------~--l-~e~Gv~v~~d~~eav~~--ADIVILAVpP~~v~~VL~eI~ 197 (303)
+.||.|.| +|.+|. .+...+.+. .. + . .-.|+.+..+..|+-+. .|++|++||+..+.+++++..
T Consensus 8 ~~~~~v~~~~~~~g~-~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~~v~~~l~e~~ 86 (291)
T PRK05678 8 DTKVIVQGITGKQGT-FHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPPPFAADAILEAI 86 (291)
T ss_pred CCeEEEeCCCchHHH-HHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCHHHHHHHHHHHH
Confidence 56899999 688998 454443321 10 1 1 12366677777787776 899999999999999998876
Q ss_pred cccCCCCEEEEecCCCcHH
Q psy6714 198 PVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV~ie 216 (303)
.. .- +.+|=+.+|...+
T Consensus 87 ~~-gv-k~avI~s~Gf~~~ 103 (291)
T PRK05678 87 DA-GI-DLIVCITEGIPVL 103 (291)
T ss_pred HC-CC-CEEEEECCCCCHH
Confidence 42 11 2333366777654
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.79 E-value=0.79 Score=44.30 Aligned_cols=51 Identities=20% Similarity=0.143 Sum_probs=32.0
Q ss_pred eEecChHHhhcCCCEEEEeeC----Cc-c-----------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 165 KITFDNKEVTLNSEVIILAVK----PH-I-----------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVp----P~-~-----------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
.+..+..+.+++||+||++-- |. . ++++..+|.++-+++.+||-+.+++++
T Consensus 65 ~i~~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~ 131 (323)
T cd00704 65 VITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANT 131 (323)
T ss_pred EEecChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHH
Confidence 333456678999999999762 22 2 445555666653355566656777765
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.67 E-value=0.9 Score=43.44 Aligned_cols=66 Identities=23% Similarity=0.300 Sum_probs=43.2
Q ss_pred cCCCcEEEEcCCh-hhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEeeC-CccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTTE-RGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG~-MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||.|. +|.+ ++..+. ..|.++ + .+..+.+++||+||.||. |..+.. +.++
T Consensus 156 l~Gk~vvVIGrs~~VG~p-la~lL~-------~~gatVtv~~s~t~~l~~~~~~ADIVIsAvg~p~~i~~------~~vk 221 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQP-VSKLLL-------QKNASVTILHSRSKDMASYLKDADVIVSAVGKPGLVTK------DVVK 221 (286)
T ss_pred CCCCEEEEECCCchhHHH-HHHHHH-------HCCCeEEEEeCCchhHHHHHhhCCEEEECCCCCcccCH------HHcC
Confidence 3457899999988 9985 544322 233332 2 345678899999999996 443322 2356
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
++.+||.+
T Consensus 222 ~gavVIDv 229 (286)
T PRK14175 222 EGAVIIDV 229 (286)
T ss_pred CCcEEEEc
Confidence 78888865
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=89.58 E-value=1.4 Score=37.62 Aligned_cols=71 Identities=11% Similarity=0.126 Sum_probs=44.7
Q ss_pred cCCCcEEEEcCCh-hhHHHHHHHHhhcHHHHhhCCCeE--ec----ChHHhhcCCCEEEEeeCCccHHHHHHhhccccCC
Q psy6714 130 WNRSDKQIAGTTE-RGPGALIASLNIVSKATGTMGAKI--TF----DNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNE 202 (303)
Q Consensus 130 ~~~mkIgIIGlG~-MG~~~La~al~r~~e~l~e~Gv~v--~~----d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~ 202 (303)
+..++|.|+|-+. .|.+ |+..+ .+.|+++ +. +.++.+++||||+.++....+ ++ .+.+++
T Consensus 26 ~~gk~v~VvGrs~~vG~p-la~lL-------~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~~~---i~--~~~ikp 92 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAP-LQCLL-------QRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKPEK---VP--TEWIKP 92 (140)
T ss_pred CCCCEEEEECCCchHHHH-HHHHH-------HHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCCCc---cC--HHHcCC
Confidence 4567899999654 4553 44332 2345543 33 667889999999999953332 21 234678
Q ss_pred CCEEEEecCCCcH
Q psy6714 203 SNLLISVAGGVPI 215 (303)
Q Consensus 203 g~IVVSiaaGV~i 215 (303)
|.+|++. |+..
T Consensus 93 Ga~Vidv--g~~~ 103 (140)
T cd05212 93 GATVINC--SPTK 103 (140)
T ss_pred CCEEEEc--CCCc
Confidence 9888854 4444
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.13 E-value=1.1 Score=42.82 Aligned_cols=66 Identities=20% Similarity=0.331 Sum_probs=44.3
Q ss_pred cCCCcEEEEcCCh-hhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTTE-RGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG~-MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||-|. +|.+ |+..+. ..|.++ +.+..+.+++|||||.++ +|..+.. ++++
T Consensus 157 l~Gk~vvViGrs~iVG~P-la~lL~-------~~~atVtv~hs~T~~l~~~~~~ADIvi~avG~p~~v~~------~~vk 222 (285)
T PRK10792 157 TYGLNAVVVGASNIVGRP-MSLELL-------LAGCTVTVCHRFTKNLRHHVRNADLLVVAVGKPGFIPG------EWIK 222 (285)
T ss_pred CCCCEEEEECCCcccHHH-HHHHHH-------HCCCeEEEEECCCCCHHHHHhhCCEEEEcCCCcccccH------HHcC
Confidence 3457899999887 7886 443322 233432 234667899999999999 4664432 3466
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
++.+||.+
T Consensus 223 ~gavVIDv 230 (285)
T PRK10792 223 PGAIVIDV 230 (285)
T ss_pred CCcEEEEc
Confidence 88888865
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=89.12 E-value=1 Score=40.47 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=14.7
Q ss_pred cCCCcEEEEcCChhhHH
Q psy6714 130 WNRSDKQIAGTTERGPG 146 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~ 146 (303)
+...||+|||+|.||..
T Consensus 19 L~~~~V~IvG~GglGs~ 35 (200)
T TIGR02354 19 LEQATVAICGLGGLGSN 35 (200)
T ss_pred HhCCcEEEECcCHHHHH
Confidence 45678999999999984
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.78 E-value=1 Score=43.72 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=16.0
Q ss_pred CcEEEEcCChhhHHHHHHHHh
Q psy6714 133 SDKQIAGTTERGPGALIASLN 153 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~ 153 (303)
|||+|||+|++|.+ ++..+.
T Consensus 1 mrVaIiGfG~VG~~-va~~L~ 20 (326)
T PRK06392 1 IRISIIGLGNVGLN-VLRIIK 20 (326)
T ss_pred CEEEEECCCHHHHH-HHHHHH
Confidence 68999999999994 665543
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=88.65 E-value=0.52 Score=38.71 Aligned_cols=98 Identities=17% Similarity=0.288 Sum_probs=52.9
Q ss_pred CcEEEEc----CChhhHHHHHHHHhhcH-H------HHh-hCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhcccc
Q psy6714 133 SDKQIAG----TTERGPGALIASLNIVS-K------ATG-TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVF 200 (303)
Q Consensus 133 mkIgIIG----lG~MG~~~La~al~r~~-e------~l~-e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L 200 (303)
++|+||| -+..|. .+...+.+.. + +.. -.|..+..+..|.-...|+++++++++.+.++++++...
T Consensus 1 ksiAVvGaS~~~~~~g~-~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~- 78 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGY-RVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAAL- 78 (116)
T ss_dssp -EEEEET--SSTTSHHH-HHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHH-
T ss_pred CEEEEEcccCCCCChHH-HHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHc-
Confidence 3699999 567776 4444433321 1 011 135666677777437899999999999999999998753
Q ss_pred CCCCEEEEecCCCcHHHHHhhCCCCCceEEEe-cCcH
Q psy6714 201 NESNLLISVAGGVPIKNMEQALPKNSRIIRAM-PNTP 236 (303)
Q Consensus 201 ~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~m-Pn~p 236 (303)
.-+.+| +..|...+++.+.+.. .-++++ ||..
T Consensus 79 g~~~v~--~~~g~~~~~~~~~a~~--~gi~vigp~C~ 111 (116)
T PF13380_consen 79 GVKAVW--LQPGAESEELIEAARE--AGIRVIGPNCL 111 (116)
T ss_dssp T-SEEE--E-TTS--HHHHHHHHH--TT-EEEESS-H
T ss_pred CCCEEE--EEcchHHHHHHHHHHH--cCCEEEeCCcc
Confidence 334444 3445555556555432 224444 6643
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.63 E-value=0.8 Score=45.64 Aligned_cols=76 Identities=8% Similarity=0.018 Sum_probs=46.4
Q ss_pred CCcEEEEcCChhhHHHHHHH-H----------hhcHHH---HhhC---CCeEe-------cChHHhhcCCCEEEEeeCCc
Q psy6714 132 RSDKQIAGTTERGPGALIAS-L----------NIVSKA---TGTM---GAKIT-------FDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a-l----------~r~~e~---l~e~---Gv~v~-------~d~~eav~~ADIVILAVpP~ 187 (303)
||||-|||+|.+|.. .+.. . ++..++ +.+. +++.. ....+++++.|+||-|.|+.
T Consensus 1 m~~ilviGaG~Vg~~-va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~ 79 (389)
T COG1748 1 MMKILVIGAGGVGSV-VAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF 79 (389)
T ss_pred CCcEEEECCchhHHH-HHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCch
Confidence 689999999999994 3322 1 222222 2222 23211 12347788999999999988
Q ss_pred cHHHHHHhhccccCCCCEEEEecC
Q psy6714 188 IVPVALNDIKPVFNESNLLISVAG 211 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVVSiaa 211 (303)
.-..+++... +.+.-+|.++.
T Consensus 80 ~~~~i~ka~i---~~gv~yvDts~ 100 (389)
T COG1748 80 VDLTILKACI---KTGVDYVDTSY 100 (389)
T ss_pred hhHHHHHHHH---HhCCCEEEccc
Confidence 8877775432 23444554443
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=88.51 E-value=1.5 Score=38.42 Aligned_cols=66 Identities=21% Similarity=0.336 Sum_probs=38.6
Q ss_pred cCCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeEe------cChHHhhcCCCEEEEeeC-CccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKIT------FDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v~------~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||-+ .+|.+ |+..+. +.|.+++ .+.++.+++|||||.++. |..+. .+.++
T Consensus 34 l~Gk~v~VvGrs~~VG~P-la~lL~-------~~~atVt~~h~~T~~l~~~~~~ADIVVsa~G~~~~i~------~~~ik 99 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKP-LAMLLL-------NKGATVTICHSKTKNLQEITRRADIVVSAVGKPNLIK------ADWIK 99 (160)
T ss_dssp TTT-EEEEE-TTTTTHHH-HHHHHH-------HTT-EEEEE-TTSSSHHHHHTTSSEEEE-SSSTT-B-------GGGS-
T ss_pred CCCCEEEEECCcCCCChH-HHHHHH-------hCCCeEEeccCCCCcccceeeeccEEeeeeccccccc------ccccc
Confidence 346789999976 57886 443322 2355432 456788999999999995 55432 23467
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
++.+||.+
T Consensus 100 ~gavVIDv 107 (160)
T PF02882_consen 100 PGAVVIDV 107 (160)
T ss_dssp TTEEEEE-
T ss_pred CCcEEEec
Confidence 88888854
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=88.34 E-value=0.8 Score=45.30 Aligned_cols=74 Identities=12% Similarity=0.056 Sum_probs=44.3
Q ss_pred CCcEEEEcCChhhHHHHHHH------------HhhcHH-------HHhh-C-C---CeEecChHHhhcCCCEEEEeeCCc
Q psy6714 132 RSDKQIAGTTERGPGALIAS------------LNIVSK-------ATGT-M-G---AKITFDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a------------l~r~~e-------~l~e-~-G---v~v~~d~~eav~~ADIVILAVpP~ 187 (303)
-.+++|||+|.++...+... ++++.+ .+.+ + | +.++.+.++++++||||+.|++..
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 35799999999998322111 112222 2222 2 2 456788999999999999999632
Q ss_pred c----HHHHHHhhccccCCCCEEE
Q psy6714 188 I----VPVALNDIKPVFNESNLLI 207 (303)
Q Consensus 188 ~----v~~VL~eI~~~L~~g~IVV 207 (303)
. ...++. ...+++|+.|+
T Consensus 235 ~~~~s~~Pv~~--~~~lkpG~hv~ 256 (379)
T PRK06199 235 TGDPSTYPYVK--REWVKPGAFLL 256 (379)
T ss_pred CCCCCcCcEec--HHHcCCCcEEe
Confidence 2 123332 12456787665
|
|
| >CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional | Back alignment and domain information |
|---|
Probab=88.17 E-value=1.2 Score=40.48 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=43.0
Q ss_pred CCcEEEE--cCChhhHHHHHHHHhhcHHHHhhCCCe--EecChHHhhcCCCEEEEeeCCccHH---------HHHHhhcc
Q psy6714 132 RSDKQIA--GTTERGPGALIASLNIVSKATGTMGAK--ITFDNKEVTLNSEVIILAVKPHIVP---------VALNDIKP 198 (303)
Q Consensus 132 ~mkIgII--GlG~MG~~~La~al~r~~e~l~e~Gv~--v~~d~~eav~~ADIVILAVpP~~v~---------~VL~eI~~ 198 (303)
||||+|| |.|+++. +... ++..|+. +..+. +.++++|.||++=+ .... .++..|..
T Consensus 1 ~~~v~iid~~~GN~~s--l~~a-------l~~~g~~v~vv~~~-~~l~~~d~iIlPG~-g~~~~~~~~l~~~gl~~~i~~ 69 (210)
T CHL00188 1 MMKIGIIDYSMGNLHS--VSRA-------IQQAGQQPCIINSE-SELAQVHALVLPGV-GSFDLAMKKLEKKGLITPIKK 69 (210)
T ss_pred CcEEEEEEcCCccHHH--HHHH-------HHHcCCcEEEEcCH-HHhhhCCEEEECCC-CchHHHHHHHHHCCHHHHHHH
Confidence 6899999 7778866 4333 3344543 33443 44678999987542 2222 12233455
Q ss_pred ccCCCCEEEEecCCCcH
Q psy6714 199 VFNESNLLISVAGGVPI 215 (303)
Q Consensus 199 ~L~~g~IVVSiaaGV~i 215 (303)
.+..+..|+-++.|..+
T Consensus 70 ~~~~~~pvlGIClG~Ql 86 (210)
T CHL00188 70 WIAEGNPFIGICLGLHL 86 (210)
T ss_pred HHHcCCCEEEECHHHHH
Confidence 55566778888877744
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=88.11 E-value=0.87 Score=45.02 Aligned_cols=75 Identities=9% Similarity=0.032 Sum_probs=42.9
Q ss_pred CcEEEEc-CChhhHHHHHHHH-hhcHH----------H-------HhhCCCeEec-ChHHhhcCCCEEEEeeCCccHHHH
Q psy6714 133 SDKQIAG-TTERGPGALIASL-NIVSK----------A-------TGTMGAKITF-DNKEVTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 133 mkIgIIG-lG~MG~~~La~al-~r~~e----------~-------l~e~Gv~v~~-d~~eav~~ADIVILAVpP~~v~~V 192 (303)
|+||||| +|.+|..++-+.. .+... + +......+.. ++.+.+.+.|++|+|.+....+++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~~vDivffa~g~~~s~~~ 80 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDALKALDIIITCQGGDYTNEI 80 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCcccccccCCCEEEEcCCHHHHHHH
Confidence 5799999 7999995444232 11111 0 0011112221 222357789999999988877766
Q ss_pred HHhhccccCCC--CEEEEec
Q psy6714 193 LNDIKPVFNES--NLLISVA 210 (303)
Q Consensus 193 L~eI~~~L~~g--~IVVSia 210 (303)
...+.. .| .+||+-+
T Consensus 81 ~p~~~~---aG~~~~VIDnS 97 (366)
T TIGR01745 81 YPKLRE---SGWQGYWIDAA 97 (366)
T ss_pred HHHHHh---CCCCeEEEECC
Confidence 655543 45 5666543
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.02 E-value=1.1 Score=42.85 Aligned_cols=51 Identities=10% Similarity=0.207 Sum_probs=31.5
Q ss_pred CeEecChHHhhcCCCEEEEeeC----Ccc------------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 164 AKITFDNKEVTLNSEVIILAVK----PHI------------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVp----P~~------------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
+.+..+.-+.+++||+||++.- |.. +.++.+.+..+ .++.+||-..+++++
T Consensus 52 ~~i~~~~~~~~~daDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d~ 118 (299)
T TIGR01771 52 KKIRSGDYSDCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNPVDI 118 (299)
T ss_pred eEEecCCHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCHHHH
Confidence 3454455678899999999873 211 33444556554 355566667676654
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=87.71 E-value=1.5 Score=42.49 Aligned_cols=48 Identities=10% Similarity=0.066 Sum_probs=30.2
Q ss_pred ChHHhhcCCCEEEEeeC----Ccc------------HHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 169 DNKEVTLNSEVIILAVK----PHI------------VPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 169 d~~eav~~ADIVILAVp----P~~------------v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
+..+.+++||+||++-- +.. +.++.++|..+-+++.+||-..+++++-
T Consensus 68 ~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~ 131 (324)
T TIGR01758 68 DPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTN 131 (324)
T ss_pred ChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHH
Confidence 44577899999999872 222 3344455665433555666677877763
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=87.45 E-value=0.73 Score=41.28 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=36.4
Q ss_pred cEEEEcCChhhHHHHHHH-H--------------hhcHHH-----------HhhCCC----eEecChHHhhcCCCEEEEe
Q psy6714 134 DKQIAGTTERGPGALIAS-L--------------NIVSKA-----------TGTMGA----KITFDNKEVTLNSEVIILA 183 (303)
Q Consensus 134 kIgIIGlG~MG~~~La~a-l--------------~r~~e~-----------l~e~Gv----~v~~d~~eav~~ADIVILA 183 (303)
||+|||.|..-.+.+... + +.+.++ +++.|. ..++|..+++++||+||.+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ 80 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence 799999998877543332 1 111121 123333 4578889999999999999
Q ss_pred eCCccHHHHH
Q psy6714 184 VKPHIVPVAL 193 (303)
Q Consensus 184 VpP~~v~~VL 193 (303)
+.+-..+...
T Consensus 81 irvGg~~~r~ 90 (183)
T PF02056_consen 81 IRVGGLEARE 90 (183)
T ss_dssp --TTHHHHHH
T ss_pred eeecchHHHH
Confidence 9876655443
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=87.33 E-value=0.83 Score=45.99 Aligned_cols=78 Identities=14% Similarity=0.222 Sum_probs=51.9
Q ss_pred CcEEEEcC----ChhhHHHHHHHHhhcH--H-------HH-hhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhcc
Q psy6714 133 SDKQIAGT----TERGPGALIASLNIVS--K-------AT-GTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKP 198 (303)
Q Consensus 133 mkIgIIGl----G~MG~~~La~al~r~~--e-------~l-~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~ 198 (303)
.+|+|||. |.+|. .+...+.+.. . +. .-.|+.+..+..++-...|+++++||++.+.++++++..
T Consensus 8 ~siavvGaS~~~~~~g~-~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~~~~~~~l~e~~~ 86 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGY-AIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPAKYVPQVVEECGE 86 (447)
T ss_pred CEEEEEccCCCCCchHH-HHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCHHHHHHHHHHHHh
Confidence 56999998 78888 5554433211 0 11 124667777777777788999999999999999998765
Q ss_pred ccCCCCEEEEecCCC
Q psy6714 199 VFNESNLLISVAGGV 213 (303)
Q Consensus 199 ~L~~g~IVVSiaaGV 213 (303)
. +-..+|| +.+|.
T Consensus 87 ~-gv~~~vi-~s~gf 99 (447)
T TIGR02717 87 K-GVKGAVV-ITAGF 99 (447)
T ss_pred c-CCCEEEE-ECCCc
Confidence 2 2233433 44454
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=87.32 E-value=2.7 Score=46.87 Aligned_cols=64 Identities=16% Similarity=0.120 Sum_probs=38.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh------------------------cHHH---Hh-hC-CC---eE-ecChHHh---hc
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI------------------------VSKA---TG-TM-GA---KI-TFDNKEV---TL 175 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r------------------------~~e~---l~-e~-Gv---~v-~~d~~ea---v~ 175 (303)
++||+|||+|.||. ..+..+.+ ..+. +. .. ++ .+ ..|.+++ ++
T Consensus 569 ~~rIlVLGAG~VG~-~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 569 SQNVLILGAGRVCR-PAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred CCcEEEECCCHHHH-HHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 56899999999998 34433211 0112 21 22 43 23 3444443 36
Q ss_pred CCCEEEEeeCCccHHHHHHhh
Q psy6714 176 NSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 176 ~ADIVILAVpP~~v~~VL~eI 196 (303)
++|+||.|+|+..-..++...
T Consensus 648 ~~DaVIsalP~~~H~~VAkaA 668 (1042)
T PLN02819 648 QVDVVISLLPASCHAVVAKAC 668 (1042)
T ss_pred CCCEEEECCCchhhHHHHHHH
Confidence 899999999987666666543
|
|
| >KOG2741|consensus | Back alignment and domain information |
|---|
Probab=87.17 E-value=2.7 Score=41.30 Aligned_cols=62 Identities=13% Similarity=0.145 Sum_probs=42.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh--------------cHH----HHhhCCC---eEecChHHhhcCC--CEEEEeeC-Cc
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI--------------VSK----ATGTMGA---KITFDNKEVTLNS--EVIILAVK-PH 187 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r--------------~~e----~l~e~Gv---~v~~d~~eav~~A--DIVILAVp-P~ 187 (303)
-.++||+|+|.|+. -+++.+.. ..+ -++.+++ ++..+.++++++. |+|.++.+ |+
T Consensus 6 ~ir~Gi~g~g~ia~-~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~q 84 (351)
T KOG2741|consen 6 TIRWGIVGAGRIAR-DFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQ 84 (351)
T ss_pred eeEEEEeehhHHHH-HHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCcc
Confidence 35799999999999 46654321 112 2345566 5677888988765 99999997 77
Q ss_pred cHHHHHH
Q psy6714 188 IVPVALN 194 (303)
Q Consensus 188 ~v~~VL~ 194 (303)
+.+-+..
T Consensus 85 H~evv~l 91 (351)
T KOG2741|consen 85 HYEVVML 91 (351)
T ss_pred HHHHHHH
Confidence 7765543
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=86.93 E-value=1.8 Score=41.74 Aligned_cols=49 Identities=12% Similarity=0.076 Sum_probs=29.4
Q ss_pred cChHHhhcCCCEEEEeeC----Ccc------------HHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 168 FDNKEVTLNSEVIILAVK----PHI------------VPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 168 ~d~~eav~~ADIVILAVp----P~~------------v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
.+..+.+++||+||++-- +.. +.++...|..+..++.++|-..++++.-
T Consensus 70 ~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~ 134 (325)
T cd01336 70 TDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTN 134 (325)
T ss_pred CCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHH
Confidence 444577899999999872 222 1334445555543455566566777653
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=86.82 E-value=2.4 Score=40.61 Aligned_cols=65 Identities=23% Similarity=0.394 Sum_probs=43.5
Q ss_pred CCCcEEEEcCCh-hhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEee-CCccHHHHHHhhccccCC
Q psy6714 131 NRSDKQIAGTTE-RGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFNE 202 (303)
Q Consensus 131 ~~mkIgIIGlG~-MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~~ 202 (303)
..+++.|||-|. +|.+ |+..+. ..|.++ +.+..+.+++|||||.|+ +|..+. .+.+++
T Consensus 163 ~Gk~vvViGrs~iVGkP-la~lL~-------~~~atVtv~hs~T~~l~~~~~~ADIvv~AvG~p~~i~------~~~vk~ 228 (287)
T PRK14176 163 EGKNAVIVGHSNVVGKP-MAAMLL-------NRNATVSVCHVFTDDLKKYTLDADILVVATGVKHLIK------ADMVKE 228 (287)
T ss_pred CCCEEEEECCCcccHHH-HHHHHH-------HCCCEEEEEeccCCCHHHHHhhCCEEEEccCCccccC------HHHcCC
Confidence 457899999887 7886 443322 234432 235677889999999999 566442 124668
Q ss_pred CCEEEEe
Q psy6714 203 SNLLISV 209 (303)
Q Consensus 203 g~IVVSi 209 (303)
|.+||.+
T Consensus 229 gavVIDv 235 (287)
T PRK14176 229 GAVIFDV 235 (287)
T ss_pred CcEEEEe
Confidence 8888865
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=86.77 E-value=2.3 Score=40.64 Aligned_cols=82 Identities=15% Similarity=0.233 Sum_probs=53.6
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhc---------HH--HHhhCCCeEecChHHhhcC--CCEEEEeeCCccHHHHHHhhc
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIV---------SK--ATGTMGAKITFDNKEVTLN--SEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~---------~e--~l~e~Gv~v~~d~~eav~~--ADIVILAVpP~~v~~VL~eI~ 197 (303)
+.||.|.| +|.+|. .+...+..+ +. .-.-.|+.+..+..|+-+. .|++|++||+..+.+++++..
T Consensus 6 ~~~~~~~g~~~~~~~-~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~l~e~~ 84 (286)
T TIGR01019 6 DTKVIVQGITGSQGS-FHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAPFAADAIFEAI 84 (286)
T ss_pred CCcEEEecCCcHHHH-HHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHHHHHHHHHHHH
Confidence 45799999 899998 454332211 11 1112466777777777665 799999999999999998876
Q ss_pred cccCCCCEEEEecCCCcHH
Q psy6714 198 PVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV~ie 216 (303)
.. .-. .+|=+.+|....
T Consensus 85 ~~-Gvk-~avIis~Gf~e~ 101 (286)
T TIGR01019 85 DA-GIE-LIVCITEGIPVH 101 (286)
T ss_pred HC-CCC-EEEEECCCCCHH
Confidence 42 112 333366777543
|
ATP citrate lyases appear to form an outgroup. |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=86.41 E-value=2.5 Score=34.94 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=18.9
Q ss_pred HHhhcCCCEEEEeeCCccHHHHHHhhc
Q psy6714 171 KEVTLNSEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 171 ~eav~~ADIVILAVpP~~v~~VL~eI~ 197 (303)
.+.++++|+||.|+........+.++.
T Consensus 87 ~~~~~~~d~vi~~~d~~~~~~~l~~~~ 113 (135)
T PF00899_consen 87 EELLKDYDIVIDCVDSLAARLLLNEIC 113 (135)
T ss_dssp HHHHHTSSEEEEESSSHHHHHHHHHHH
T ss_pred cccccCCCEEEEecCCHHHHHHHHHHH
Confidence 356678899988887766666665543
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.33 E-value=2.1 Score=38.94 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=32.9
Q ss_pred CcEEEEc-CChhhHHHHHHHHhh---------cHHHHhh-CCCeEe-------cChHHhhcCCCEEEEeeCC
Q psy6714 133 SDKQIAG-TTERGPGALIASLNI---------VSKATGT-MGAKIT-------FDNKEVTLNSEVIILAVKP 186 (303)
Q Consensus 133 mkIgIIG-lG~MG~~~La~al~r---------~~e~l~e-~Gv~v~-------~d~~eav~~ADIVILAVpP 186 (303)
|||+||| .|..|...+..++++ +..++.+ .++.+. +...+.+..-|+||.++..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence 8999999 899999433334333 2233333 344321 1223567788999999853
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=86.00 E-value=1.8 Score=34.82 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=39.2
Q ss_pred cCChhhHHHHHHHHhhcHHH------------------H--hhCCCeEecChHHhhc--CCCEEEEeeCCccHHHHHHhh
Q psy6714 139 GTTERGPGALIASLNIVSKA------------------T--GTMGAKITFDNKEVTL--NSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 139 GlG~MG~~~La~al~r~~e~------------------l--~e~Gv~v~~d~~eav~--~ADIVILAVpP~~v~~VL~eI 196 (303)
|+|.||. .|+..+.+.... . ...+.....+..++++ +.||||=|..++.+.+.+..+
T Consensus 1 G~G~VG~-~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~ 79 (117)
T PF03447_consen 1 GFGNVGR-GLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYYEKA 79 (117)
T ss_dssp --SHHHH-HHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHH
T ss_pred CCCHHHH-HHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHHHHHH
Confidence 8999999 576655433321 0 0112345567777777 789999998777777666554
Q ss_pred ccccCCCCEEEEecC
Q psy6714 197 KPVFNESNLLISVAG 211 (303)
Q Consensus 197 ~~~L~~g~IVVSiaa 211 (303)
|..|.-||+...
T Consensus 80 ---L~~G~~VVt~nk 91 (117)
T PF03447_consen 80 ---LERGKHVVTANK 91 (117)
T ss_dssp ---HHTTCEEEES-H
T ss_pred ---HHCCCeEEEECH
Confidence 335666775543
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.93 E-value=2.7 Score=40.01 Aligned_cols=66 Identities=15% Similarity=0.270 Sum_probs=41.8
Q ss_pred cCCCcEEEEcCCh-hhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEeeC-CccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTTE-RGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG~-MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||.|. .|.+ ++..+ .+.|+++ + .+..+.++++|+||-|+. |..+. .+.++
T Consensus 157 l~Gk~vvViG~gg~vGkp-ia~~L-------~~~gatVtv~~~~t~~L~~~~~~aDIvI~AtG~~~~v~------~~~lk 222 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKP-MAMML-------LNANATVTICHSRTQNLPELVKQADIIVGAVGKPELIK------KDWIK 222 (283)
T ss_pred CCCCEEEEECCcHHHHHH-HHHHH-------HhCCCEEEEEeCCchhHHHHhccCCEEEEccCCCCcCC------HHHcC
Confidence 3467899999998 8985 44332 2233332 2 345567889999999994 44221 12356
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
++.+|+.+
T Consensus 223 ~gavViDv 230 (283)
T PRK14192 223 QGAVVVDA 230 (283)
T ss_pred CCCEEEEE
Confidence 78887754
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=85.85 E-value=9.9 Score=38.02 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=32.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh--------------cHHHHhhCCCeEe-cChHHhhcCCCEEEEee
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI--------------VSKATGTMGAKIT-FDNKEVTLNSEVIILAV 184 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r--------------~~e~l~e~Gv~v~-~d~~eav~~ADIVILAV 184 (303)
+++|.|||+|..|-+.+++.+.. ..+.+.+.|+.+. ....+.++++|+||++-
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~sp 74 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSS 74 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECC
Confidence 56899999999998435654321 1123455677653 22334456788888775
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=85.73 E-value=3.9 Score=40.19 Aligned_cols=74 Identities=18% Similarity=0.311 Sum_probs=41.9
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHHH---Hh-hCCCeEe------cChHHhhcCCCEEEEeeC------
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSKA---TG-TMGAKIT------FDNKEVTLNSEVIILAVK------ 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e~---l~-e~Gv~v~------~d~~eav~~ADIVILAVp------ 185 (303)
..++.|||.|.+|.. .+..+ ++..++ +. .+|..+. .+..+.+.++|+||.|++
T Consensus 167 ~~~VlViGaG~vG~~-aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~ 245 (370)
T TIGR00518 167 PGDVTIIGGGVVGTN-AAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKA 245 (370)
T ss_pred CceEEEEcCCHHHHH-HHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCC
Confidence 356999999999984 33322 222222 22 3343221 223566789999999983
Q ss_pred Cc-cHHHHHHhhccccCCCCEEEEec
Q psy6714 186 PH-IVPVALNDIKPVFNESNLLISVA 210 (303)
Q Consensus 186 P~-~v~~VL~eI~~~L~~g~IVVSia 210 (303)
|. ...+.++. ++++.+||.+.
T Consensus 246 p~lit~~~l~~----mk~g~vIvDva 267 (370)
T TIGR00518 246 PKLVSNSLVAQ----MKPGAVIVDVA 267 (370)
T ss_pred CcCcCHHHHhc----CCCCCEEEEEe
Confidence 11 12344433 45677787654
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.60 E-value=2.5 Score=40.48 Aligned_cols=66 Identities=18% Similarity=0.308 Sum_probs=42.9
Q ss_pred cCCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEeeC-CccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||-| .+|.+ ++..+ .+.|.++ + .+..+.+++|||||.|+. |..+. .++++
T Consensus 155 l~Gk~vvVvGrs~~VG~P-la~lL-------~~~gAtVtv~hs~t~~l~~~~~~ADIvV~AvG~p~~i~------~~~vk 220 (285)
T PRK14191 155 IKGKDVVIIGASNIVGKP-LAMLM-------LNAGASVSVCHILTKDLSFYTQNADIVCVGVGKPDLIK------ASMVK 220 (285)
T ss_pred CCCCEEEEECCCchhHHH-HHHHH-------HHCCCEEEEEeCCcHHHHHHHHhCCEEEEecCCCCcCC------HHHcC
Confidence 346789999988 78886 43332 2334433 2 234567899999999995 55432 12356
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 221 ~GavVIDv 228 (285)
T PRK14191 221 KGAVVVDI 228 (285)
T ss_pred CCcEEEEe
Confidence 88888865
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=85.47 E-value=1.5 Score=40.78 Aligned_cols=106 Identities=13% Similarity=0.072 Sum_probs=53.2
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHHHH-------hhCCCeEecChHH-hhcCCCEEEEeeCCcc---HH
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSKAT-------GTMGAKITFDNKE-VTLNSEVIILAVKPHI---VP 190 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e~l-------~e~Gv~v~~d~~e-av~~ADIVILAVpP~~---v~ 190 (303)
.+++.|+|.|.||.+ ++..+ ++..++. ...|.....+..+ ...++|+||-|++... +.
T Consensus 117 ~k~vliiGaGg~g~a-ia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~ 195 (270)
T TIGR00507 117 NQRVLIIGAGGAARA-VALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNID 195 (270)
T ss_pred CCEEEEEcCcHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCC
Confidence 567999999999984 44332 2222221 1223222222222 3357999999998532 21
Q ss_pred HHHHhhccccCCCCEEEEecC-CCcHHHHHhhCCCCCceEEEecCcHHhhhCC
Q psy6714 191 VALNDIKPVFNESNLLISVAG-GVPIKNMEQALPKNSRIIRAMPNTPALVRQG 242 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSiaa-GV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G 242 (303)
++.-. ...++++.+|+.++- ..... |.+.... ..+.++....+.+.|+
T Consensus 196 ~~~~~-~~~l~~~~~v~D~~y~p~~T~-ll~~A~~--~G~~~vdG~~Ml~~Qa 244 (270)
T TIGR00507 196 EPPVP-AEKLKEGMVVYDMVYNPGETP-FLAEAKS--LGTKTIDGLGMLVAQA 244 (270)
T ss_pred CCCCC-HHHcCCCCEEEEeccCCCCCH-HHHHHHH--CCCeeeCCHHHHHHHH
Confidence 11000 123557778886642 22232 3332221 1234555566666655
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.41 E-value=3.1 Score=39.86 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=42.6
Q ss_pred cCCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeEe------cChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKIT------FDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v~------~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||-+ .+|.+ |+..+. +.|.+++ .+..+.+++|||||.|+ +|..+. .++++
T Consensus 155 l~Gk~vvVvGrS~iVGkP-la~lL~-------~~~atVtichs~T~~l~~~~~~ADIvI~AvG~~~~i~------~~~vk 220 (284)
T PRK14170 155 IEGKRAVVIGRSNIVGKP-VAQLLL-------NENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVK------KDYIK 220 (284)
T ss_pred CCCCEEEEECCCCcchHH-HHHHHH-------HCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccC------HHHcC
Confidence 346789999955 55765 443322 2344432 35677899999999999 466432 22456
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 221 ~GavVIDv 228 (284)
T PRK14170 221 PGAIVIDV 228 (284)
T ss_pred CCCEEEEc
Confidence 88888864
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=85.39 E-value=2.5 Score=43.61 Aligned_cols=35 Identities=11% Similarity=0.275 Sum_probs=22.4
Q ss_pred HhhcCCCEEEEee-----CCc--cHHHHHHhhccccCCCCEEEEec
Q psy6714 172 EVTLNSEVIILAV-----KPH--IVPVALNDIKPVFNESNLLISVA 210 (303)
Q Consensus 172 eav~~ADIVILAV-----pP~--~v~~VL~eI~~~L~~g~IVVSia 210 (303)
+.++++||||-|+ |.. ..++.++ .+++|.+||.++
T Consensus 243 e~~~~~DIVI~TalipG~~aP~Lit~emv~----~MKpGsvIVDlA 284 (511)
T TIGR00561 243 AQAKEVDIIITTALIPGKPAPKLITEEMVD----SMKAGSVIVDLA 284 (511)
T ss_pred HHhCCCCEEEECcccCCCCCCeeehHHHHh----hCCCCCEEEEee
Confidence 4467899999999 321 2334433 455788888654
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=85.21 E-value=3 Score=37.90 Aligned_cols=34 Identities=24% Similarity=0.473 Sum_probs=24.5
Q ss_pred hHHhhcCCCEEEEeeC-Ccc-HHHHHHhhccccCCCCEEEEe
Q psy6714 170 NKEVTLNSEVIILAVK-PHI-VPVALNDIKPVFNESNLLISV 209 (303)
Q Consensus 170 ~~eav~~ADIVILAVp-P~~-v~~VL~eI~~~L~~g~IVVSi 209 (303)
..+.+++|||||.|+. |.. +. .+.+++|.+||.+
T Consensus 120 l~~~~~~ADIVIsAvG~~~~~i~------~d~ik~GavVIDV 155 (197)
T cd01079 120 TLDCLSQSDVVITGVPSPNYKVP------TELLKDGAICINF 155 (197)
T ss_pred HHHHhhhCCEEEEccCCCCCccC------HHHcCCCcEEEEc
Confidence 4577899999999995 554 22 2235688888865
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.20 E-value=2 Score=42.93 Aligned_cols=44 Identities=14% Similarity=0.071 Sum_probs=28.7
Q ss_pred hHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 170 NKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 170 ~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
+.+.+.++|+||.|+.....+.++.+.... .+..+|+.--++.+
T Consensus 260 n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~--~gIP~Id~G~~l~~ 303 (393)
T PRK06153 260 NVDELDGFTFVFVCVDKGSSRKLIVDYLEA--LGIPFIDVGMGLEL 303 (393)
T ss_pred HHHHhcCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEeeeccee
Confidence 345678999999999877777777554321 34556665334433
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=85.11 E-value=3.6 Score=36.83 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=15.6
Q ss_pred cCCCcEEEEcCChhhHHHHH
Q psy6714 130 WNRSDKQIAGTTERGPGALI 149 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La 149 (303)
+...||.|||+|.+|. .++
T Consensus 19 l~~~~VlviG~GglGs-~ia 37 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGS-PAA 37 (202)
T ss_pred hcCCCEEEECCCHHHH-HHH
Confidence 5567999999999999 444
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.11 E-value=3.2 Score=39.92 Aligned_cols=66 Identities=15% Similarity=0.292 Sum_probs=42.6
Q ss_pred cCCCcEEEEc-CChhhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAG-TTERGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIG-lG~MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.||| -..+|.+ |+..+ ...|+++ + .+..+.+++|||||.|| +|..+. .++++
T Consensus 156 l~Gk~vvVIGrS~iVGkP-la~lL-------~~~~atVtv~hs~T~~l~~~~~~ADIvIsAvGkp~~i~------~~~ik 221 (297)
T PRK14186 156 IAGKKAVVVGRSILVGKP-LALML-------LAANATVTIAHSRTQDLASITREADILVAAAGRPNLIG------AEMVK 221 (297)
T ss_pred CCCCEEEEECCCccchHH-HHHHH-------HHCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccC------HHHcC
Confidence 3457899999 4566776 33332 1234443 2 35677889999999999 465432 23466
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 222 ~gavVIDv 229 (297)
T PRK14186 222 PGAVVVDV 229 (297)
T ss_pred CCCEEEEe
Confidence 88888865
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.87 E-value=2.2 Score=43.22 Aligned_cols=59 Identities=20% Similarity=0.204 Sum_probs=40.2
Q ss_pred CCcEEEEcCChhhHHHHHHH-Hh--------------hcH----------HHH-hhCCC----eEecChHHhhcCCCEEE
Q psy6714 132 RSDKQIAGTTERGPGALIAS-LN--------------IVS----------KAT-GTMGA----KITFDNKEVTLNSEVII 181 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a-l~--------------r~~----------e~l-~e~Gv----~v~~d~~eav~~ADIVI 181 (303)
++||+|||.|..+.+-+... +. ... +++ ++.|. ..++|..+++++||+|+
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAdfVi 82 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGADFVI 82 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCCEEE
Confidence 57899999999997544332 11 011 112 23443 34678899999999999
Q ss_pred EeeCCccHH
Q psy6714 182 LAVKPHIVP 190 (303)
Q Consensus 182 LAVpP~~v~ 190 (303)
.++.+-.++
T Consensus 83 ~~~rvG~l~ 91 (442)
T COG1486 83 TQIRVGGLE 91 (442)
T ss_pred EEEeeCCcc
Confidence 999876665
|
|
| >PRK06813 homoserine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.80 E-value=2.7 Score=41.16 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=19.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVSKAT 159 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~e~l 159 (303)
+++|+|+|+|++|.+ ++..+.+..+.+
T Consensus 2 ~i~I~liG~G~VG~~-~~~~L~~~~~~l 28 (346)
T PRK06813 2 KIKVVLSGYGTVGRE-FIKLLNEKYLYI 28 (346)
T ss_pred eeEEEEEecChhHHH-HHHHHHHhHHHH
Confidence 478999999999994 666655444433
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=84.74 E-value=16 Score=36.63 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=32.6
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh----------c--------HHHHhhCCCeEec--ChHHhhcCCCEEEEee
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI----------V--------SKATGTMGAKITF--DNKEVTLNSEVIILAV 184 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r----------~--------~e~l~e~Gv~v~~--d~~eav~~ADIVILAV 184 (303)
..+||+|+|+|..|. .++..+.. . .+.+.+.|+.+.. +..+.+.++|+||.+.
T Consensus 13 ~~~~i~v~G~G~sG~-a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Sp 85 (458)
T PRK01710 13 KNKKVAVVGIGVSNI-PLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTP 85 (458)
T ss_pred cCCeEEEEcccHHHH-HHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECC
Confidence 356899999999998 46544321 1 0235556776532 2234457788888774
|
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=84.67 E-value=17 Score=36.13 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=16.7
Q ss_pred ccCC-CcEEEEcCChhhHHHHHH
Q psy6714 129 RWNR-SDKQIAGTTERGPGALIA 150 (303)
Q Consensus 129 ~~~~-mkIgIIGlG~MG~~~La~ 150 (303)
||.. ++|.|||+|..|-+.+..
T Consensus 3 ~~~~~~~v~viG~G~sG~s~~~~ 25 (438)
T PRK04663 3 RWQGIKNVVVVGLGITGLSVVKH 25 (438)
T ss_pred cccCCceEEEEeccHHHHHHHHH
Confidence 5666 789999999999854443
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.60 E-value=3.4 Score=39.51 Aligned_cols=70 Identities=23% Similarity=0.314 Sum_probs=44.6
Q ss_pred cCCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||-+ .+|.+ |+..+. +.|.++ +.+..+..++|||||.|+ +|..+. .+.++
T Consensus 155 l~Gk~vvVvGrS~iVGkP-la~lL~-------~~~atVt~chs~T~nl~~~~~~ADIvIsAvGkp~~i~------~~~vk 220 (282)
T PRK14166 155 LEGKDAVIIGASNIVGRP-MATMLL-------NAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLR------SDMVK 220 (282)
T ss_pred CCCCEEEEECCCCcchHH-HHHHHH-------HCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccC------HHHcC
Confidence 345789999955 56776 433321 234443 245667889999999999 566543 22356
Q ss_pred CCCEEEEecCCCcH
Q psy6714 202 ESNLLISVAGGVPI 215 (303)
Q Consensus 202 ~g~IVVSiaaGV~i 215 (303)
+|.+||.+ |++.
T Consensus 221 ~GavVIDv--Gin~ 232 (282)
T PRK14166 221 EGVIVVDV--GINR 232 (282)
T ss_pred CCCEEEEe--cccc
Confidence 88888865 5443
|
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.50 E-value=2.5 Score=41.28 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=17.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhc
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIV 155 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~ 155 (303)
.++|+|+|+|.+|++ ++..+.+.
T Consensus 3 ~v~v~l~G~G~VG~~-~~~il~~~ 25 (333)
T COG0460 3 TVKVGLLGLGTVGSG-VLEILAEK 25 (333)
T ss_pred eEEEEEEccCchhHH-HHHHHHHh
Confidence 578999999999995 66554443
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.20 E-value=3.6 Score=39.49 Aligned_cols=65 Identities=20% Similarity=0.318 Sum_probs=42.0
Q ss_pred CCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEee-CCccHHHHHHhhccccCC
Q psy6714 131 NRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFNE 202 (303)
Q Consensus 131 ~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~~ 202 (303)
..+++.|||-+ .+|.+ |+..+ .+.|+++ + .+..+.+++|||||.|+ +|..+. .+++++
T Consensus 158 ~GK~vvViGrS~iVGkP-la~lL-------~~~~ATVtichs~T~~L~~~~~~ADIvV~AvGkp~~i~------~~~vk~ 223 (288)
T PRK14171 158 TGKNVVIIGRSNIVGKP-LSALL-------LKENCSVTICHSKTHNLSSITSKADIVVAAIGSPLKLT------AEYFNP 223 (288)
T ss_pred CCCEEEEECCCCcchHH-HHHHH-------HHCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCCCccC------HHHcCC
Confidence 45789999955 56776 33332 1234433 2 35677889999999999 566443 224568
Q ss_pred CCEEEEe
Q psy6714 203 SNLLISV 209 (303)
Q Consensus 203 g~IVVSi 209 (303)
|.+||.+
T Consensus 224 GavVIDv 230 (288)
T PRK14171 224 ESIVIDV 230 (288)
T ss_pred CCEEEEe
Confidence 8888865
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.09 E-value=3.7 Score=39.13 Aligned_cols=66 Identities=18% Similarity=0.326 Sum_probs=42.7
Q ss_pred cCCCcEEEEcC-ChhhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGT-TERGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGl-G~MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||- ..+|.+ |+..+ .+.|+++ + .+..+.+++|||||.|+ +|..+. .++++
T Consensus 156 l~Gk~vvViGrS~~VGkP-la~lL-------~~~~AtVt~chs~T~~l~~~~~~ADIvIsAvGkp~~i~------~~~ik 221 (278)
T PRK14172 156 IEGKEVVVIGRSNIVGKP-VAQLL-------LNENATVTICHSKTKNLKEVCKKADILVVAIGRPKFID------EEYVK 221 (278)
T ss_pred CCCCEEEEECCCccchHH-HHHHH-------HHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccC------HHHcC
Confidence 34678999994 466776 43332 1234433 2 35677889999999999 466432 22356
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 222 ~gavVIDv 229 (278)
T PRK14172 222 EGAIVIDV 229 (278)
T ss_pred CCcEEEEe
Confidence 88888865
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.05 E-value=3.7 Score=39.46 Aligned_cols=66 Identities=20% Similarity=0.285 Sum_probs=42.8
Q ss_pred cCCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||-+ .+|.+ |+..+. +.|.++ +.+..+.+++|||||.|+ +|..+. .++++
T Consensus 158 l~Gk~vvViGrS~iVGkP-la~lL~-------~~~aTVt~chs~T~~l~~~~~~ADIvVsAvGkp~~i~------~~~ik 223 (294)
T PRK14187 158 LSGSDAVVIGRSNIVGKP-MACLLL-------GENCTVTTVHSATRDLADYCSKADILVAAVGIPNFVK------YSWIK 223 (294)
T ss_pred CCCCEEEEECCCccchHH-HHHHHh-------hCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccC------HHHcC
Confidence 446789999955 56776 433321 234443 235677899999999999 466433 22456
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 224 ~gaiVIDV 231 (294)
T PRK14187 224 KGAIVIDV 231 (294)
T ss_pred CCCEEEEe
Confidence 88888865
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.86 E-value=1.3 Score=43.88 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=16.9
Q ss_pred CCcEEEEcCChhhHHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIAS 151 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a 151 (303)
+++|||||-|..|. |++.+
T Consensus 1 ~~tvgIlGGGQLgr-Mm~~a 19 (375)
T COG0026 1 MKTVGILGGGQLGR-MMALA 19 (375)
T ss_pred CCeEEEEcCcHHHH-HHHHH
Confidence 57899999999999 88876
|
|
| >PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=83.45 E-value=2.4 Score=38.22 Aligned_cols=73 Identities=12% Similarity=0.171 Sum_probs=40.6
Q ss_pred CCcEEEE--cCChhhHHHHHHHHhhcHHHHhhCCC----eEecChHHhhcCCCEEEEeeCCccHHH--HH------Hhhc
Q psy6714 132 RSDKQIA--GTTERGPGALIASLNIVSKATGTMGA----KITFDNKEVTLNSEVIILAVKPHIVPV--AL------NDIK 197 (303)
Q Consensus 132 ~mkIgII--GlG~MG~~~La~al~r~~e~l~e~Gv----~v~~d~~eav~~ADIVILAVpP~~v~~--VL------~eI~ 197 (303)
||||+|| |+|+++. +..+ +++.|. .+..++.+ ++++|.|||.=......+ .+ ..+.
T Consensus 1 ~~~~~iid~g~gn~~s--~~~a-------l~~~g~~~~v~~~~~~~~-l~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~ 70 (209)
T PRK13146 1 MMTVAIIDYGSGNLRS--AAKA-------LERAGAGADVVVTADPDA-VAAADRVVLPGVGAFADCMRGLRAVGLGEAVI 70 (209)
T ss_pred CCeEEEEECCCChHHH--HHHH-------HHHcCCCccEEEECCHHH-hcCCCEEEECCCCcHHHHHHHHHHCCcHHHHH
Confidence 6899999 6777866 3333 334444 34444444 689999999543222221 11 1222
Q ss_pred cc-cCCCCEEEEecCCCc
Q psy6714 198 PV-FNESNLLISVAGGVP 214 (303)
Q Consensus 198 ~~-L~~g~IVVSiaaGV~ 214 (303)
.. ...+.-|+.++.|..
T Consensus 71 ~~~~~~~~PvlGiC~G~q 88 (209)
T PRK13146 71 EAVLAAGRPFLGICVGMQ 88 (209)
T ss_pred HHHHhCCCcEEEECHHHH
Confidence 22 234566777776653
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=83.16 E-value=4.6 Score=38.64 Aligned_cols=66 Identities=18% Similarity=0.291 Sum_probs=42.8
Q ss_pred cCCCcEEEEcC-ChhhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGT-TERGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGl-G~MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||- ..+|.+ |+..+ .+.|.++ + .+..+..++|||||.|+ +|..+. .++++
T Consensus 157 l~Gk~vvViGrS~iVGkP-la~lL-------~~~~atVt~chs~T~~l~~~~~~ADIvIsAvGk~~~i~------~~~ik 222 (284)
T PRK14177 157 VTGKNAVVVGRSPILGKP-MAMLL-------TEMNATVTLCHSKTQNLPSIVRQADIIVGAVGKPEFIK------ADWIS 222 (284)
T ss_pred CCCCEEEEECCCCcchHH-HHHHH-------HHCCCEEEEeCCCCCCHHHHHhhCCEEEEeCCCcCccC------HHHcC
Confidence 34578999994 466776 43332 2234433 2 35667899999999999 466543 23466
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 223 ~gavVIDv 230 (284)
T PRK14177 223 EGAVLLDA 230 (284)
T ss_pred CCCEEEEe
Confidence 88888865
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=83.05 E-value=3.2 Score=37.32 Aligned_cols=67 Identities=10% Similarity=0.035 Sum_probs=40.4
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhh-----------cHH---HHhhCC-CeEecC--hHHhhcCCCEEEEeeCCccHHHH
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNI-----------VSK---ATGTMG-AKITFD--NKEVTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r-----------~~e---~l~e~G-v~v~~d--~~eav~~ADIVILAVpP~~v~~V 192 (303)
+..++|.|||.|.||. ..+..+-. ..+ .+.+.| +..... ..+.+.++|+||.|+....+...
T Consensus 8 l~~k~vLVIGgG~va~-~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN~~ 86 (202)
T PRK06718 8 LSNKRVVIVGGGKVAG-RRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVNEQ 86 (202)
T ss_pred cCCCEEEEECCCHHHH-HHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHHHH
Confidence 4567999999999998 44433211 011 122223 322111 12346789999999998888877
Q ss_pred HHhhc
Q psy6714 193 LNDIK 197 (303)
Q Consensus 193 L~eI~ 197 (303)
+.+..
T Consensus 87 i~~~a 91 (202)
T PRK06718 87 VKEDL 91 (202)
T ss_pred HHHHH
Confidence 75544
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=82.99 E-value=4.4 Score=38.81 Aligned_cols=65 Identities=25% Similarity=0.388 Sum_probs=42.6
Q ss_pred CCCcEEEEc-CChhhHHHHHHHHhhcHHHHhhCCCeEe------cChHHhhcCCCEEEEee-CCccHHHHHHhhccccCC
Q psy6714 131 NRSDKQIAG-TTERGPGALIASLNIVSKATGTMGAKIT------FDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFNE 202 (303)
Q Consensus 131 ~~mkIgIIG-lG~MG~~~La~al~r~~e~l~e~Gv~v~------~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~~ 202 (303)
..+++.||| ...+|.+ |+..+ ...|.+++ .+..+.+++|||||.|+ +|..+. .+++++
T Consensus 154 ~Gk~vvViGrS~iVGkP-la~lL-------~~~~aTVtichs~T~~l~~~~~~ADIvIsAvGkp~~i~------~~~vk~ 219 (287)
T PRK14173 154 AGKEVVVVGRSNIVGKP-LAALL-------LREDATVTLAHSKTQDLPAVTRRADVLVVAVGRPHLIT------PEMVRP 219 (287)
T ss_pred CCCEEEEECCCCccHHH-HHHHH-------HHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccC------HHHcCC
Confidence 457899999 5566776 43332 12344332 35677899999999999 465442 234668
Q ss_pred CCEEEEe
Q psy6714 203 SNLLISV 209 (303)
Q Consensus 203 g~IVVSi 209 (303)
|.+||.+
T Consensus 220 GavVIDV 226 (287)
T PRK14173 220 GAVVVDV 226 (287)
T ss_pred CCEEEEc
Confidence 8888864
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.72 E-value=2.9 Score=40.98 Aligned_cols=81 Identities=16% Similarity=0.185 Sum_probs=44.3
Q ss_pred CCCCcccccC---CCcEEEEcCChhhHHHHHHHH----------hhcH---HHHhhCCCeEecC--hH---Hhh-cCCCE
Q psy6714 122 TPSSREARWN---RSDKQIAGTTERGPGALIASL----------NIVS---KATGTMGAKITFD--NK---EVT-LNSEV 179 (303)
Q Consensus 122 ~~~~~~~~~~---~mkIgIIGlG~MG~~~La~al----------~r~~---e~l~e~Gv~v~~d--~~---eav-~~ADI 179 (303)
|--++.++|+ ..+|+|+|+|-+|. |.+... .+.. +.++++|.....+ .. +.+ +.+|+
T Consensus 154 T~y~alk~~~~~pG~~V~I~G~GGlGh-~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 154 TTYRALKKANVKPGKWVAVVGAGGLGH-MAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADA 232 (339)
T ss_pred eEeeehhhcCCCCCCEEEEECCcHHHH-HHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcE
Confidence 3334444444 46899999997776 433221 1222 2345777643211 12 222 23899
Q ss_pred EEEeeCCccHHHHHHhhccccCCCCEE
Q psy6714 180 IILAVKPHIVPVALNDIKPVFNESNLL 206 (303)
Q Consensus 180 VILAVpP~~v~~VL~eI~~~L~~g~IV 206 (303)
||.++++..+...++-++. .|+++
T Consensus 233 ii~tv~~~~~~~~l~~l~~---~G~~v 256 (339)
T COG1064 233 IIDTVGPATLEPSLKALRR---GGTLV 256 (339)
T ss_pred EEECCChhhHHHHHHHHhc---CCEEE
Confidence 8888887667766665542 45543
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=82.42 E-value=4.8 Score=38.51 Aligned_cols=66 Identities=24% Similarity=0.345 Sum_probs=42.8
Q ss_pred cCCCcEEEEc-CChhhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAG-TTERGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIG-lG~MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.||| -..+|.+ |+..+. +.|+++ +.|..+..++|||||.|+ +|..+.. +.++
T Consensus 156 l~Gk~vvViGrS~~VGkP-la~lL~-------~~~ATVt~chs~T~dl~~~~k~ADIvIsAvGkp~~i~~------~~vk 221 (282)
T PRK14180 156 TEGAYAVVVGASNVVGKP-VSQLLL-------NAKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITA------DMVK 221 (282)
T ss_pred CCCCEEEEECCCCcchHH-HHHHHH-------HCCCEEEEEcCCCCCHHHHhhhcCEEEEccCCcCcCCH------HHcC
Confidence 4467899999 4566876 433321 224433 245667899999999999 4665432 2456
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 222 ~gavVIDv 229 (282)
T PRK14180 222 EGAVVIDV 229 (282)
T ss_pred CCcEEEEe
Confidence 88888865
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.23 E-value=2.2 Score=41.66 Aligned_cols=108 Identities=16% Similarity=0.227 Sum_probs=59.0
Q ss_pred CcEEEEcCChhhHHHHHHH---------HhhcHHHHh----hCCCeE--e----cChHHhhcCCCEEEEee--CCccHHH
Q psy6714 133 SDKQIAGTTERGPGALIAS---------LNIVSKATG----TMGAKI--T----FDNKEVTLNSEVIILAV--KPHIVPV 191 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~a---------l~r~~e~l~----e~Gv~v--~----~d~~eav~~ADIVILAV--pP~~v~~ 191 (303)
-|+.|||-|.+|.....++ ++.+.++++ .++.++ . .+.++.+..+|+||=+| |-.....
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPk 248 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPK 248 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCce
Confidence 4899999999998422222 123333433 234432 2 23457788999999998 3222222
Q ss_pred HH-HhhccccCCCCEEEEec--CCCcHHHHHh--hC-C---CCCceEEEecCcHHhhh
Q psy6714 192 AL-NDIKPVFNESNLLISVA--GGVPIKNMEQ--AL-P---KNSRIIRAMPNTPALVR 240 (303)
Q Consensus 192 VL-~eI~~~L~~g~IVVSia--aGV~ie~L~~--~l-~---~~~~VVr~mPn~p~~v~ 240 (303)
++ +++...++++.+||.++ -|=.++.++- +- | .+-.+-.++||.|..+-
T Consensus 249 Lvt~e~vk~MkpGsVivDVAiDqGGc~Et~~~TTh~~PtY~~~gvvhY~VaNmPgaVp 306 (371)
T COG0686 249 LVTREMVKQMKPGSVIVDVAIDQGGCFETSHPTTHDDPTYEVDGVVHYGVANMPGAVP 306 (371)
T ss_pred ehhHHHHHhcCCCcEEEEEEEcCCCceeccccccCCCCceeecCEEEEecCCCCcccc
Confidence 22 44444567899888654 2223444422 11 1 01133466799887654
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=82.18 E-value=4.8 Score=38.48 Aligned_cols=65 Identities=20% Similarity=0.325 Sum_probs=42.1
Q ss_pred CCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEee-CCccHHHHHHhhccccCC
Q psy6714 131 NRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFNE 202 (303)
Q Consensus 131 ~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~~ 202 (303)
..+++.|||-+ .+|.+ |+..+ ...|.++ + .+..+.+++|||||.|+ +|..+. .+++++
T Consensus 155 ~Gk~vvViGrS~iVGkP-la~lL-------~~~~atVtichs~T~~l~~~~~~ADIvI~AvG~p~~i~------~~~vk~ 220 (282)
T PRK14169 155 AGKRVVIVGRSNIVGRP-LAGLM-------VNHDATVTIAHSKTRNLKQLTKEADILVVAVGVPHFIG------ADAVKP 220 (282)
T ss_pred CCCEEEEECCCccchHH-HHHHH-------HHCCCEEEEECCCCCCHHHHHhhCCEEEEccCCcCccC------HHHcCC
Confidence 45789999954 66776 33332 1234433 2 35677889999999999 466543 224668
Q ss_pred CCEEEEe
Q psy6714 203 SNLLISV 209 (303)
Q Consensus 203 g~IVVSi 209 (303)
|.+||.+
T Consensus 221 GavVIDv 227 (282)
T PRK14169 221 GAVVIDV 227 (282)
T ss_pred CcEEEEe
Confidence 8888865
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=82.16 E-value=4.6 Score=38.59 Aligned_cols=65 Identities=25% Similarity=0.417 Sum_probs=42.7
Q ss_pred CCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEee-CCccHHHHHHhhccccCC
Q psy6714 131 NRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFNE 202 (303)
Q Consensus 131 ~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~~ 202 (303)
..+++.|||-+ .+|.+ |+..+. +.|.++ +.+..+.+++|||||.|+ +|..+. .+++++
T Consensus 156 ~Gk~vvViGrS~~VG~P-la~lL~-------~~~AtVti~hs~T~~l~~~~~~ADIvV~AvGkp~~i~------~~~vk~ 221 (281)
T PRK14183 156 KGKDVCVVGASNIVGKP-MAALLL-------NANATVDICHIFTKDLKAHTKKADIVIVGVGKPNLIT------EDMVKE 221 (281)
T ss_pred CCCEEEEECCCCcchHH-HHHHHH-------HCCCEEEEeCCCCcCHHHHHhhCCEEEEecCcccccC------HHHcCC
Confidence 45789999977 77886 433321 223332 235677899999999999 466443 224568
Q ss_pred CCEEEEe
Q psy6714 203 SNLLISV 209 (303)
Q Consensus 203 g~IVVSi 209 (303)
|.+||.+
T Consensus 222 gavvIDv 228 (281)
T PRK14183 222 GAIVIDI 228 (281)
T ss_pred CcEEEEe
Confidence 8888865
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=81.97 E-value=2.1 Score=37.06 Aligned_cols=40 Identities=8% Similarity=0.205 Sum_probs=21.5
Q ss_pred HHhhcCCCEEEEee--CCccHHHHH-HhhccccCCCCEEEEec
Q psy6714 171 KEVTLNSEVIILAV--KPHIVPVAL-NDIKPVFNESNLLISVA 210 (303)
Q Consensus 171 ~eav~~ADIVILAV--pP~~v~~VL-~eI~~~L~~g~IVVSia 210 (303)
.+.+..+|+||.++ +......++ ++....++++.+|+.++
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 45667899999866 333343333 22333456787777654
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=81.95 E-value=5.6 Score=38.69 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=20.7
Q ss_pred hHHhhcCCCEEEEeeCCccHHHHHHhhc
Q psy6714 170 NKEVTLNSEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 170 ~~eav~~ADIVILAVpP~~v~~VL~eI~ 197 (303)
..++++++|+||.|+......-++.++.
T Consensus 110 ~~~~~~~~DlVid~~D~~~~r~~in~~~ 137 (338)
T PRK12475 110 LEELVKEVDLIIDATDNFDTRLLINDLS 137 (338)
T ss_pred HHHHhcCCCEEEEcCCCHHHHHHHHHHH
Confidence 3567889999999997766666665554
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=81.92 E-value=4.3 Score=39.94 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=43.9
Q ss_pred cCCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||-+ .+|.+ |+..+. +.|+++ +.+..+.+++|||||.|+ +|..+. .+.++
T Consensus 212 l~GK~vvVIGRS~iVGkP-la~LL~-------~~~ATVTicHs~T~nl~~~~~~ADIvIsAvGkp~~v~------~d~vk 277 (345)
T PLN02897 212 IAGKNAVVIGRSNIVGLP-MSLLLQ-------RHDATVSTVHAFTKDPEQITRKADIVIAAAGIPNLVR------GSWLK 277 (345)
T ss_pred CCCCEEEEECCCccccHH-HHHHHH-------HCCCEEEEEcCCCCCHHHHHhhCCEEEEccCCcCccC------HHHcC
Confidence 345789999954 56776 333221 233432 245678899999999999 466433 22466
Q ss_pred CCCEEEEecCCCc
Q psy6714 202 ESNLLISVAGGVP 214 (303)
Q Consensus 202 ~g~IVVSiaaGV~ 214 (303)
+|.+||.+ |+.
T Consensus 278 ~GavVIDV--Gin 288 (345)
T PLN02897 278 PGAVVIDV--GTT 288 (345)
T ss_pred CCCEEEEc--ccc
Confidence 88888865 554
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=81.89 E-value=3.7 Score=39.72 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=26.7
Q ss_pred HHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCCC
Q psy6714 171 KEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGV 213 (303)
Q Consensus 171 ~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV 213 (303)
.++++++|+||.|+.....+-++..+... .++++|+.+-|.
T Consensus 103 ~~li~~~DvV~d~tDn~esR~L~~~~~~~--~~k~~I~aalGf 143 (307)
T cd01486 103 EELIKDHDVIFLLTDSRESRWLPTLLSAA--KNKLVINAALGF 143 (307)
T ss_pred HHHHhhCCEEEECCCCHHHHHHHHHHHHH--hCCcEEEEEecc
Confidence 46789999999999777776565554322 345666543333
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=81.82 E-value=2.4 Score=40.57 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=42.4
Q ss_pred CCCcEEEEc-CChhhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEee-CCccHHHHHHhhccccCC
Q psy6714 131 NRSDKQIAG-TTERGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFNE 202 (303)
Q Consensus 131 ~~mkIgIIG-lG~MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~~ 202 (303)
..+++.||| .+.+|.+ |+..+.+. ..|+++ +.+..+.+++|||||.|+ +|..+. .+++++
T Consensus 157 ~Gk~vvViGrS~~VGkP-la~lL~~~-----~~~atVtvchs~T~~l~~~~k~ADIvV~AvGkp~~i~------~~~ik~ 224 (284)
T PRK14193 157 AGAHVVVIGRGVTVGRP-IGLLLTRR-----SENATVTLCHTGTRDLAAHTRRADIIVAAAGVAHLVT------ADMVKP 224 (284)
T ss_pred CCCEEEEECCCCcchHH-HHHHHhhc-----cCCCEEEEeCCCCCCHHHHHHhCCEEEEecCCcCccC------HHHcCC
Confidence 457899999 5567876 43332110 023332 235677899999999999 465432 234668
Q ss_pred CCEEEEe
Q psy6714 203 SNLLISV 209 (303)
Q Consensus 203 g~IVVSi 209 (303)
|.+||.+
T Consensus 225 GavVIDv 231 (284)
T PRK14193 225 GAAVLDV 231 (284)
T ss_pred CCEEEEc
Confidence 8888864
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=81.62 E-value=5.3 Score=38.20 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=41.5
Q ss_pred CCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEeeC-CccHHHHHHhhccccCC
Q psy6714 131 NRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFNE 202 (303)
Q Consensus 131 ~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~~ 202 (303)
..+++.|||-+ .+|.+ |+..+. +.|.++ +.+..+.+++|||||.|+. |..+. .+++++
T Consensus 156 ~Gk~vvViGrS~iVGkP-la~lL~-------~~~AtVtichs~T~nl~~~~~~ADIvI~AvGk~~~i~------~~~ik~ 221 (282)
T PRK14182 156 KGKRALVVGRSNIVGKP-MAMMLL-------ERHATVTIAHSRTADLAGEVGRADILVAAIGKAELVK------GAWVKE 221 (282)
T ss_pred CCCEEEEECCCCcchHH-HHHHHH-------HCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccC------HHHcCC
Confidence 45789999954 66776 333321 223432 2356778899999999994 55432 224668
Q ss_pred CCEEEEe
Q psy6714 203 SNLLISV 209 (303)
Q Consensus 203 g~IVVSi 209 (303)
|.+||.+
T Consensus 222 gaiVIDv 228 (282)
T PRK14182 222 GAVVIDV 228 (282)
T ss_pred CCEEEEe
Confidence 8888864
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=81.60 E-value=5.1 Score=38.60 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=42.4
Q ss_pred cCCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||-+ .+|.+ |+..+ .+.|.++ +.+..+.+++|||||.|+ +|..+. .++++
T Consensus 165 l~Gk~vvVIGRS~iVGkP-la~lL-------~~~~ATVtvchs~T~nl~~~~~~ADIvv~AvGk~~~i~------~~~vk 230 (299)
T PLN02516 165 IKGKKAVVVGRSNIVGLP-VSLLL-------LKADATVTVVHSRTPDPESIVREADIVIAAAGQAMMIK------GDWIK 230 (299)
T ss_pred CCCCEEEEECCCccchHH-HHHHH-------HHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccC------HHHcC
Confidence 446899999955 56776 43332 1224433 235677899999999999 454332 23466
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 231 ~gavVIDv 238 (299)
T PLN02516 231 PGAAVIDV 238 (299)
T ss_pred CCCEEEEe
Confidence 88888865
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=81.43 E-value=3.4 Score=38.27 Aligned_cols=26 Identities=8% Similarity=0.091 Sum_probs=19.3
Q ss_pred HHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 171 KEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 171 ~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
.+.++++|+||.|+.....+..+.++
T Consensus 117 ~~~~~~~DiVi~~~D~~~~r~~ln~~ 142 (245)
T PRK05690 117 AALIAGHDLVLDCTDNVATRNQLNRA 142 (245)
T ss_pred HHHHhcCCEEEecCCCHHHHHHHHHH
Confidence 35678999999999766666666554
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=81.43 E-value=9.9 Score=29.97 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=34.3
Q ss_pred EEEEcCChhhHHHHHHHHhhcH-------------HHHhhCCCeEe-cCh--HH-----hhcCCCEEEEeeCCccHHHHH
Q psy6714 135 KQIAGTTERGPGALIASLNIVS-------------KATGTMGAKIT-FDN--KE-----VTLNSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 135 IgIIGlG~MG~~~La~al~r~~-------------e~l~e~Gv~v~-~d~--~e-----av~~ADIVILAVpP~~v~~VL 193 (303)
|-|+|.|.+|. .++..+.... +.+.+.|+.+. .|. .+ -++++|.||++++.+...-.+
T Consensus 1 vvI~G~g~~~~-~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~ 79 (116)
T PF02254_consen 1 VVIIGYGRIGR-EIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLI 79 (116)
T ss_dssp EEEES-SHHHH-HHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHH
T ss_pred eEEEcCCHHHH-HHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHH
Confidence 56899999999 5776643321 23456676542 221 11 246899999998766554333
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=81.11 E-value=4.6 Score=39.96 Aligned_cols=69 Identities=23% Similarity=0.329 Sum_probs=43.8
Q ss_pred cCCCcEEEEc-CChhhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAG-TTERGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIG-lG~MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.||| -..+|.+ |+..+ .+.|.++ +.+..+.+++|||||.|+ +|..+. .++++
T Consensus 229 l~GK~vvVIGRS~iVGkP-La~LL-------~~~~ATVTicHs~T~nl~~~~r~ADIVIsAvGkp~~i~------~d~vK 294 (364)
T PLN02616 229 IKGKRAVVIGRSNIVGMP-AALLL-------QREDATVSIVHSRTKNPEEITREADIIISAVGQPNMVR------GSWIK 294 (364)
T ss_pred CCCCEEEEECCCccccHH-HHHHH-------HHCCCeEEEeCCCCCCHHHHHhhCCEEEEcCCCcCcCC------HHHcC
Confidence 3457899999 4466776 33322 1234433 245678899999999999 466433 22466
Q ss_pred CCCEEEEecCCCc
Q psy6714 202 ESNLLISVAGGVP 214 (303)
Q Consensus 202 ~g~IVVSiaaGV~ 214 (303)
+|.+||.+ |+.
T Consensus 295 ~GAvVIDV--GIn 305 (364)
T PLN02616 295 PGAVVIDV--GIN 305 (364)
T ss_pred CCCEEEec--ccc
Confidence 88888864 554
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=80.86 E-value=2.2 Score=40.34 Aligned_cols=108 Identities=8% Similarity=0.040 Sum_probs=55.1
Q ss_pred CCcEEEEcCChhhHHHHHHH-----------HhhcHHHHh----h----CC-CeE--ecChHHhhcCCCEEEEeeCCccH
Q psy6714 132 RSDKQIAGTTERGPGALIAS-----------LNIVSKATG----T----MG-AKI--TFDNKEVTLNSEVIILAVKPHIV 189 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a-----------l~r~~e~l~----e----~G-v~v--~~d~~eav~~ADIVILAVpP~~v 189 (303)
.+++.|||+|.+|.+ ++.. ++++.++.+ . .+ ..+ ..+..+.+.++|+||-|+|.-.-
T Consensus 127 ~k~vlIlGaGGaara-ia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~ 205 (284)
T PRK12549 127 LERVVQLGAGGAGAA-VAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGMA 205 (284)
T ss_pred CCEEEEECCcHHHHH-HHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCCC
Confidence 467999999999994 3332 123322211 1 11 222 12334467789999999863311
Q ss_pred HHHHHhh-ccccCCCCEEEEec-CCCcHHHHHhhCCCCCceEEEecCcHHhhhCCc
Q psy6714 190 PVALNDI-KPVFNESNLLISVA-GGVPIKNMEQALPKNSRIIRAMPNTPALVRQGA 243 (303)
Q Consensus 190 ~~VL~eI-~~~L~~g~IVVSia-aGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~ 243 (303)
...-..+ ...+.++.+|+.++ .+....-|+..-..+ .+++....+.+.|+.
T Consensus 206 ~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G---~~~~~G~~ML~~Qa~ 258 (284)
T PRK12549 206 KHPGLPLPAELLRPGLWVADIVYFPLETELLRAARALG---CRTLDGGGMAVFQAV 258 (284)
T ss_pred CCCCCCCCHHHcCCCcEEEEeeeCCCCCHHHHHHHHCC---CeEecCHHHHHHHHH
Confidence 0000001 12255666777654 444444444432222 345666677776653
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=80.55 E-value=6.4 Score=35.99 Aligned_cols=43 Identities=21% Similarity=0.350 Sum_probs=28.8
Q ss_pred ChHHhhcCCCEEEEeeCCccH-HHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 169 DNKEVTLNSEVIILAVKPHIV-PVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 169 d~~eav~~ADIVILAVpP~~v-~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
+..++++++|+||=++++..+ +++++.+. ++.+|+.+.+....
T Consensus 90 ~l~~~l~~~dvlIgaT~~G~~~~~~l~~m~----~~~ivf~lsnP~~e 133 (226)
T cd05311 90 TLKEALKGADVFIGVSRPGVVKKEMIKKMA----KDPIVFALANPVPE 133 (226)
T ss_pred CHHHHHhcCCEEEeCCCCCCCCHHHHHhhC----CCCEEEEeCCCCCc
Confidence 555788899999999975544 34555443 56677777766643
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=80.49 E-value=4.6 Score=38.85 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=42.8
Q ss_pred cCCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||-+ .+|.++..+.+++. -..++++ + .+..+.+++|||||.|+ +|..+. .+.++
T Consensus 155 l~GK~vvViGrS~iVGkPla~lL~~~~----~~~~aTVtvchs~T~nl~~~~~~ADIvIsAvGkp~~i~------~~~vk 224 (293)
T PRK14185 155 TSGKKCVVLGRSNIVGKPMAQLMMQKA----YPGDCTVTVCHSRSKNLKKECLEADIIIAALGQPEFVK------ADMVK 224 (293)
T ss_pred CCCCEEEEECCCccchHHHHHHHHcCC----CCCCCEEEEecCCCCCHHHHHhhCCEEEEccCCcCccC------HHHcC
Confidence 345789999955 56776322222221 0013332 2 45677889999999999 466543 23466
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 225 ~gavVIDv 232 (293)
T PRK14185 225 EGAVVIDV 232 (293)
T ss_pred CCCEEEEe
Confidence 88888865
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=80.41 E-value=4.7 Score=35.88 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=33.8
Q ss_pred EEEEc-CChhhHHHHHHHHhh---------------cHHHHhhCCCeEe-------cChHHhhcCCCEEEEeeCC
Q psy6714 135 KQIAG-TTERGPGALIASLNI---------------VSKATGTMGAKIT-------FDNKEVTLNSEVIILAVKP 186 (303)
Q Consensus 135 IgIIG-lG~MG~~~La~al~r---------------~~e~l~e~Gv~v~-------~d~~eav~~ADIVILAVpP 186 (303)
|.|+| +|.+|.+ ++..+.. ..+.+...|+.+. .+..++++++|.||+++++
T Consensus 1 I~V~GatG~~G~~-v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRS-VVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHH-HHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHH-HHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 68898 6999994 5544211 1124556788643 1234578999999999983
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=80.13 E-value=6.5 Score=35.15 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=14.4
Q ss_pred cCCCcEEEEcCChhhHH
Q psy6714 130 WNRSDKQIAGTTERGPG 146 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~ 146 (303)
+...||.|||+|.+|..
T Consensus 19 L~~s~VlIiG~gglG~e 35 (197)
T cd01492 19 LRSARILLIGLKGLGAE 35 (197)
T ss_pred HHhCcEEEEcCCHHHHH
Confidence 44679999999999994
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.03 E-value=3.4 Score=37.74 Aligned_cols=73 Identities=21% Similarity=0.269 Sum_probs=41.9
Q ss_pred CCcEEEE--cCChhhHHHHHHHHhhcHHHHhhCCCe--EecChHHhhcCCCEEEEeeCCccHHHHHH---------hhcc
Q psy6714 132 RSDKQIA--GTTERGPGALIASLNIVSKATGTMGAK--ITFDNKEVTLNSEVIILAVKPHIVPVALN---------DIKP 198 (303)
Q Consensus 132 ~mkIgII--GlG~MG~~~La~al~r~~e~l~e~Gv~--v~~d~~eav~~ADIVILAVpP~~v~~VL~---------eI~~ 198 (303)
||+|+|| |+|++.. +. ..++..|+. ++.|+ +.+..||-|||.= .-.+.+..+ .|++
T Consensus 1 m~~i~IIDyg~GNL~S--v~-------~Aler~G~~~~vs~d~-~~i~~AD~liLPG-VGaf~~am~~L~~~gl~~~i~~ 69 (204)
T COG0118 1 MMMVAIIDYGSGNLRS--VK-------KALERLGAEVVVSRDP-EEILKADKLILPG-VGAFGAAMANLRERGLIEAIKE 69 (204)
T ss_pred CCEEEEEEcCcchHHH--HH-------HHHHHcCCeeEEecCH-HHHhhCCEEEecC-CCCHHHHHHHHHhcchHHHHHH
Confidence 6889999 8888776 22 234455554 44444 4577899999862 122222222 2333
Q ss_pred ccCCCCEEEEecCCCcH
Q psy6714 199 VFNESNLLISVAGGVPI 215 (303)
Q Consensus 199 ~L~~g~IVVSiaaGV~i 215 (303)
.+..++-++-++-|+.+
T Consensus 70 ~~~~~kP~LGIClGMQl 86 (204)
T COG0118 70 AVESGKPFLGICLGMQL 86 (204)
T ss_pred HHhcCCCEEEEeHhHHh
Confidence 33345667777666654
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=80.03 E-value=6.2 Score=35.85 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=18.1
Q ss_pred HHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 171 KEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 171 ~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
.+.++++|+||.|+.....+..+.+.
T Consensus 106 ~~~~~~~DvVi~~~d~~~~r~~l~~~ 131 (228)
T cd00757 106 EELIAGYDLVLDCTDNFATRYLINDA 131 (228)
T ss_pred HHHHhCCCEEEEcCCCHHHHHHHHHH
Confidence 35677899999998765555555544
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 303 | ||||
| 2ger_A | 321 | Crystal Structure And Oxidative Mechanism Of Human | 4e-29 | ||
| 2gr9_A | 277 | Crystal Structure Of P5cr Complexed With Nadh Lengt | 4e-29 | ||
| 2izz_A | 322 | Crystal Structure Of Human Pyrroline-5-Carboxylate | 5e-29 | ||
| 2rcy_A | 262 | Crystal Structure Of Plasmodium Falciparum Pyrrolin | 3e-19 | ||
| 3tri_A | 280 | Structure Of A Pyrroline-5-Carboxylate Reductase (P | 2e-16 | ||
| 3gt0_A | 247 | Crystal Structure Of Pyrroline 5-Carboxylate Reduct | 7e-16 | ||
| 1yqg_A | 263 | Crystal Structure Of A Pyrroline-5-Carboxylate Redu | 4e-11 | ||
| 2amf_A | 259 | Crystal Structure Of 1-Pyrroline-5-Carboxylate Redu | 5e-07 | ||
| 2ahr_A | 259 | Crystal Structures Of 1-Pyrroline-5-Carboxylate Red | 7e-06 |
| >pdb|2GER|A Chain A, Crystal Structure And Oxidative Mechanism Of Human Pyrroline-5- Carboxylate Reductase Length = 321 | Back alignment and structure |
|
| >pdb|2GR9|A Chain A, Crystal Structure Of P5cr Complexed With Nadh Length = 277 | Back alignment and structure |
|
| >pdb|2IZZ|A Chain A, Crystal Structure Of Human Pyrroline-5-Carboxylate Reductase Length = 322 | Back alignment and structure |
|
| >pdb|2RCY|A Chain A, Crystal Structure Of Plasmodium Falciparum Pyrroline Carboxylate Reductase (Mal13p1.284) With Nadp Bound Length = 262 | Back alignment and structure |
|
| >pdb|3TRI|A Chain A, Structure Of A Pyrroline-5-Carboxylate Reductase (Proc) From Coxiella Burnetii Length = 280 | Back alignment and structure |
|
| >pdb|3GT0|A Chain A, Crystal Structure Of Pyrroline 5-Carboxylate Reductase From Bacillus Cereus. Northeast Structural Genomics Consortium Target Bcr38b Length = 247 | Back alignment and structure |
|
| >pdb|1YQG|A Chain A, Crystal Structure Of A Pyrroline-5-Carboxylate Reductase From Neisseria Meningitides Mc58 Length = 263 | Back alignment and structure |
|
| >pdb|2AMF|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase From Human Pathogen Streptococcus Pyogenes Length = 259 | Back alignment and structure |
|
| >pdb|2AHR|A Chain A, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase From Human Pathogen Streptococcus Pyogenes Length = 259 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} Length = 247 | Back alignment and structure |
|---|
Score = 185 bits (471), Expect = 1e-57
Identities = 50/133 (37%), Positives = 80/133 (60%)
Query: 161 TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQ 220
G T DN EV N++++IL++KP + +N+IK + +++++A G I++ E
Sbjct: 48 KYGLTTTTDNNEVAKNADILILSIKPDLYASIINEIKEIIKNDAIIVTIAAGKSIESTEN 107
Query: 221 ALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDG 280
A K +++R MPNTPALV +G S +++D + V+N+F S G E V E L+D
Sbjct: 108 AFNKKVKVVRVMPNTPALVGEGMSALCPNEMVTEKDLEDVLNIFNSFGQTEIVSEKLMDV 167
Query: 281 ITGLSGSGPAYRY 293
+T +SGS PAY Y
Sbjct: 168 VTSVSGSSPAYVY 180
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} Length = 262 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 5e-55
Identities = 46/131 (35%), Positives = 74/131 (56%), Gaps = 1/131 (0%)
Query: 163 GAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQAL 222
N+E+ + ++I+ AVKP I LN+IKP + LLIS+ GG+ I +E+ +
Sbjct: 45 TLNYMSSNEELARHCDIIVCAVKPDIAGSVLNNIKPYLSS-KLLISICGGLNIGKLEEMV 103
Query: 223 PKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDGIT 282
++I+ MPNTP LV +G+ ++ + + D + V ++F S G E+ E +D T
Sbjct: 104 GSENKIVWVMPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKDMDIAT 163
Query: 283 GLSGSGPAYRY 293
+SG GPAY Y
Sbjct: 164 AISGCGPAYVY 174
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* Length = 322 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 1e-53
Identities = 62/140 (44%), Positives = 89/140 (63%), Gaps = 3/140 (2%)
Query: 157 KATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIK 216
A MG K+T NKE +S+V+ LAVKPHI+P L++I + ++++S A GV I
Sbjct: 65 SALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTIS 124
Query: 217 NMEQALP---KNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEV 273
++E+ L R+IR M NTP +VR+GA+V+ G+ A +D + + L SVG C EV
Sbjct: 125 SIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEV 184
Query: 274 PEYLLDGITGLSGSGPAYRY 293
E L+D +TGLSGSGPAY +
Sbjct: 185 EEDLIDAVTGLSGSGPAYAF 204
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A Length = 259 | Back alignment and structure |
|---|
Score = 173 bits (442), Expect = 3e-53
Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Query: 161 TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQ 220
+ ++++ +++IL +KP + L + +IS+A G+ ++ +
Sbjct: 45 QLALPYAMSHQDLIDQVDLVILGIKPQLFETVLKPLHF----KQPIISMAAGISLQRLAT 100
Query: 221 ALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDG 280
+ ++ ++R MPN A + Q ++ + S + V +L S G+ ++ E D
Sbjct: 101 FVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFGSTFDISEKDFDT 160
Query: 281 ITGLSGSGPAYRY 293
T L+GS PAY Y
Sbjct: 161 FTALAGSSPAYIY 173
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} Length = 280 | Back alignment and structure |
|---|
Score = 170 bits (434), Expect = 7e-52
Identities = 51/133 (38%), Positives = 78/133 (58%), Gaps = 2/133 (1%)
Query: 161 TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESN-LLISVAGGVPIKNME 219
G T DN++ LN++V++LAVKPH + + ++K + +E+ L+IS+A GV +E
Sbjct: 48 KCGVHTTQDNRQGALNADVVVLAVKPHQIKMVCEELKDILSETKILVISLAVGVTTPLIE 107
Query: 220 QALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVP-EYLL 278
+ L K SRI+RAMPNTP+ VR GA+ + ++ ++VG V E +
Sbjct: 108 KWLGKASRIVRAMPNTPSSVRAGATGLFANETVDKDQKNLAESIMRAVGLVIWVSSEDQI 167
Query: 279 DGITGLSGSGPAY 291
+ I LSGSGPAY
Sbjct: 168 EKIAALSGSGPAY 180
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* Length = 263 | Back alignment and structure |
|---|
Score = 156 bits (398), Expect = 1e-46
Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 8/159 (5%)
Query: 137 IAGTTERGPGALIAS---LNIVSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVAL 193
G ++G + + + +G + + E+ + +V+ILAVKP + A
Sbjct: 16 AGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVKPQDMEAAC 74
Query: 194 NDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSAS 253
+I+ L++SVA G+ + + + L RI+R MPNTP + G S + S
Sbjct: 75 KNIRT---NGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVS 131
Query: 254 DQDAQTVINLFKSVGTCEEVP-EYLLDGITGLSGSGPAY 291
+ D + + KSVG + E + GITG+SGSGPAY
Sbjct: 132 ETDRRIADRIMKSVGLTVWLDDEEKMHGITGISGSGPAY 170
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 303 | |||
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.97 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.96 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.93 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.91 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.88 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.87 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.83 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.82 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.81 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.76 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.76 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.76 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.76 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.74 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.74 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.72 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.66 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.66 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.65 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.64 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.61 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.61 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.6 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.59 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.57 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.55 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.52 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.24 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.49 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.48 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.48 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.48 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.46 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.46 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.46 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.46 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.45 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.44 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.43 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.43 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.41 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.41 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.41 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.4 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.4 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.38 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.37 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.37 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.37 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.36 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.35 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.34 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.33 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.32 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.31 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.3 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.3 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.3 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.3 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.29 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.28 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.27 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.27 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.24 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.21 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.21 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.19 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.19 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.17 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.16 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.09 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.09 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.07 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.05 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 98.98 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 98.91 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 98.82 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 98.79 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 98.71 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 98.69 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 98.67 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 98.66 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 98.65 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 98.62 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 98.61 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 98.61 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 98.43 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 98.43 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 98.37 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 98.35 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 98.32 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 98.31 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 98.24 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 98.24 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 98.23 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 98.19 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 98.17 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.16 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 98.12 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 98.11 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 98.11 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 98.09 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 98.08 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.08 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 98.07 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.05 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 98.03 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.02 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.01 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.0 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 98.0 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 98.0 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 97.99 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 97.97 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 97.96 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 97.96 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 97.93 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 97.93 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 97.92 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 97.9 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 97.9 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.9 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 97.88 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.88 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 97.87 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 97.84 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 97.84 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 97.83 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 97.83 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 97.8 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 97.79 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 97.79 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 97.77 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 97.75 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 97.75 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.75 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 97.74 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 97.73 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 97.72 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 97.72 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.7 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 97.7 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 97.69 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 97.67 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 97.65 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 97.64 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 97.63 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.61 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 97.59 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 97.58 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.57 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 97.56 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 97.54 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 97.52 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 97.52 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 97.5 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 97.49 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 97.48 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 97.45 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.45 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 97.44 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.44 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 97.43 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 97.42 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.41 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.4 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.39 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 97.37 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.37 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.31 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.26 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 97.26 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 97.26 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 97.25 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 97.25 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.23 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.22 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.13 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.12 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 97.11 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.09 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.08 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 97.08 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.08 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.07 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 97.05 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 96.97 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 96.94 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 96.93 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 96.93 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 96.9 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 96.89 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 96.88 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 96.87 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 96.86 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 96.85 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 96.83 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 96.81 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 96.79 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 96.77 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 96.75 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 96.73 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 96.72 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 96.71 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 96.69 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 96.67 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 96.66 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 96.63 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.58 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.57 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 96.56 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 96.55 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 96.54 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 96.54 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 96.52 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 96.52 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 96.51 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 96.5 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 96.48 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 96.37 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 96.36 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 96.36 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 96.31 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 96.3 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 96.29 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 96.25 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 96.24 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 96.24 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 96.24 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 96.22 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 96.21 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 96.17 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 96.17 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 96.16 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 96.15 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.1 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 96.1 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 96.09 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 96.08 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.03 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 96.02 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 95.99 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 95.97 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 95.93 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.89 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.89 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 95.86 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 95.85 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 95.81 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 95.8 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 95.79 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 95.73 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 95.72 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 95.72 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 95.69 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 95.68 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 95.66 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 95.63 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 95.62 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 95.61 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 95.55 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 95.5 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 95.44 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 95.4 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 95.38 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 95.29 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 95.16 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 94.99 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 94.91 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 94.88 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 94.84 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 94.83 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 94.77 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 94.76 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 94.67 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 94.6 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 94.58 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 94.35 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 94.34 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 94.17 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 93.88 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 93.87 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 93.8 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 93.79 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 93.78 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 93.78 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 93.75 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 93.72 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 93.66 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 93.41 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 93.4 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 93.4 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 93.14 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 93.07 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 93.01 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 92.95 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 92.92 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 92.83 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 92.7 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 92.62 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 92.44 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 92.13 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 91.88 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 91.2 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 90.56 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 90.36 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 90.3 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 90.26 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 90.09 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 90.07 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 89.97 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 89.94 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 89.9 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 89.79 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 89.28 | |
| 1rm4_O | 337 | Glyceraldehyde 3-phosphate dehydrogenase A; rossma | 89.0 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 88.95 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 88.79 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 88.74 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 88.65 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 88.61 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 88.52 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 88.16 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 87.94 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 87.75 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 87.54 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 86.74 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 85.2 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 85.06 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 84.74 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 84.69 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 84.12 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 83.6 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 83.29 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 83.28 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 82.96 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 82.86 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 82.73 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 80.85 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 80.14 |
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-30 Score=238.87 Aligned_cols=169 Identities=31% Similarity=0.444 Sum_probs=149.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHh-------------hcHH---HHhh-CCCeEecChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLN-------------IVSK---ATGT-MGAKITFDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~-------------r~~e---~l~e-~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
+|||+|||+|+||.+ ++..+. ++.+ .+.+ +|+.+..++.++++++|+||+||||+.+.++++
T Consensus 3 ~~~I~iIG~G~mG~a-ia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p~~~~~vl~ 81 (280)
T 3tri_A 3 TSNITFIGGGNMARN-IVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKPHQIKMVCE 81 (280)
T ss_dssp CSCEEEESCSHHHHH-HHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCGGGHHHHHH
T ss_pred CCEEEEEcccHHHHH-HHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCHHHHHHHHH
Confidence 589999999999994 554421 1112 2333 599888899999999999999999999999999
Q ss_pred hhccc-cCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEc
Q psy6714 195 DIKPV-FNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEV 273 (303)
Q Consensus 195 eI~~~-L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~v 273 (303)
++.++ ++++++|||+++|++++.|++.++.+.+++++|||+|..+++|++.++++...++++++.+++||+.+|.++++
T Consensus 82 ~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn~p~~v~~g~~~l~~~~~~~~~~~~~v~~l~~~iG~~~~v 161 (280)
T 3tri_A 82 ELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTPSSVRAGATGLFANETVDKDQKNLAESIMRAVGLVIWV 161 (280)
T ss_dssp HHHHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHGGGEEEEEC
T ss_pred HHHhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecCChHHhcCccEEEEeCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 99988 87888999999999999999999866789999999999999999999988888999999999999999999888
Q ss_pred -CCCCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 274 -PEYLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 274 -dE~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
+|++||++++++||||||+|+|+++|..
T Consensus 162 ~~E~~~d~~talsgsgpa~~~~~~eal~~ 190 (280)
T 3tri_A 162 SSEDQIEKIAALSGSGPAYIFLIMEALQE 190 (280)
T ss_dssp SSHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred CCHHHhhHHHHHhccHHHHHHHHHHHHHH
Confidence 6899999999999999999999999863
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=220.54 Aligned_cols=170 Identities=31% Similarity=0.553 Sum_probs=147.0
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh--------------hcHHH---Hh-hCCCeEecChHHhhcCCCEEEEeeCCccHHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN--------------IVSKA---TG-TMGAKITFDNKEVTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~--------------r~~e~---l~-e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~V 192 (303)
++|||+|||+|+||.. ++..+. ++.++ +. ++|+....++.++++++|+||+||||+.+.++
T Consensus 1 M~~~i~iIG~G~mG~~-~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~~~~~~v 79 (247)
T 3gt0_A 1 MDKQIGFIGCGNMGMA-MIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKPDLYASI 79 (247)
T ss_dssp CCCCEEEECCSHHHHH-HHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCTTTHHHH
T ss_pred CCCeEEEECccHHHHH-HHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCHHHHHHH
Confidence 3589999999999994 554321 12222 32 46898888999999999999999999999999
Q ss_pred HHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEE
Q psy6714 193 LNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEE 272 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~ 272 (303)
++++.++++++++|||+++|++.+.+++.++.+.+++++|||+|..++.|.+.+++++..++++++.++++|+.+|.+++
T Consensus 80 ~~~l~~~l~~~~~vvs~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~ 159 (247)
T 3gt0_A 80 INEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPNTPALVGEGMSALCPNEMVTEKDLEDVLNIFNSFGQTEI 159 (247)
T ss_dssp C---CCSSCTTCEEEECSCCSCHHHHHHHHCSCCEEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHGGGEEEEE
T ss_pred HHHHHhhcCCCCEEEEecCCCCHHHHHHHhCCCCcEEEEeCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 99999989889999999999999999998876678999999999999999999998888899999999999999999999
Q ss_pred cCCCCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 273 VPEYLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 273 vdE~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
++|++||.+++++||+|+|+|.|+++|..
T Consensus 160 ~~e~~~d~~~a~~g~gpa~~~~~~eal~~ 188 (247)
T 3gt0_A 160 VSEKLMDVVTSVSGSSPAYVYMIIEAMAD 188 (247)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHccHHHHHhccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999864
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-25 Score=207.36 Aligned_cols=169 Identities=38% Similarity=0.613 Sum_probs=144.6
Q ss_pred CCCcEEEEcCChhhHHHHHHHH-h-------------hcH-----HHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASL-N-------------IVS-----KATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al-~-------------r~~-----e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~ 191 (303)
.+|||+|||+|+||.+ ++..+ + +.. +.+.+.|+.+..++.++++++|+||+||||+++.+
T Consensus 21 ~~mkI~iIG~G~mG~a-la~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~~~~~~~ 99 (322)
T 2izz_A 21 QSMSVGFIGAGQLAFA-LAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPF 99 (322)
T ss_dssp -CCCEEEESCSHHHHH-HHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSCGGGHHH
T ss_pred CCCEEEEECCCHHHHH-HHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeCHHHHHH
Confidence 3689999999999994 54432 1 111 23446699888888899999999999999999999
Q ss_pred HHHhhccccCCCCEEEEecCCCcHHHHHhhCCC---CCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcC
Q psy6714 192 ALNDIKPVFNESNLLISVAGGVPIKNMEQALPK---NSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVG 268 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~---~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG 268 (303)
++.++.+.++++++|||+++|++.+.+++.++. ..++++.||+.|..+..|.++++.++..+++..+.++++|+.+|
T Consensus 100 vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~~~~vv~~~p~~p~~~~~g~~v~~~g~~~~~~~~~~v~~ll~~~G 179 (322)
T 2izz_A 100 ILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVG 179 (322)
T ss_dssp HHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSSCCEEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTE
T ss_pred HHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCCCCeEEEEeCCcHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhCC
Confidence 999999888889999999999999877776542 35799999999999998888888887777899999999999999
Q ss_pred CcEEcCCCCchhhhhhccchHHHHHHHHHhhh
Q psy6714 269 TCEEVPEYLLDGITGLSGSGPAYRYEVTSNEV 300 (303)
Q Consensus 269 ~~v~vdE~~~Da~tAlsGsgPAf~~~~ie~~~ 300 (303)
..++++|+.+|.+++++||+|+|++.|++++.
T Consensus 180 ~~~~~~e~~~~~~~a~~g~gpa~~~~~~eala 211 (322)
T 2izz_A 180 FCTEVEEDLIDAVTGLSGSGPAYAFTALDALA 211 (322)
T ss_dssp EEEECCGGGHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred CEEEeCHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 98889999999999999999999999999876
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=188.57 Aligned_cols=167 Identities=31% Similarity=0.505 Sum_probs=141.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcH----HHH-------hhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhcccc
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVS----KAT-------GTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVF 200 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~----e~l-------~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L 200 (303)
+|||+|||+|.||. .++..+.+.. ... ...|+.+..++.++++++|+||+|||++.+.+++.++.+.+
T Consensus 4 ~m~i~iiG~G~mG~-~~a~~l~~~g~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~v~~~l~~~l 82 (262)
T 2rcy_A 4 NIKLGFMGLGQMGS-ALAHGIANANIIKKENLFYYGPSKKNTTLNYMSSNEELARHCDIIVCAVKPDIAGSVLNNIKPYL 82 (262)
T ss_dssp SSCEEEECCSHHHH-HHHHHHHHHTSSCGGGEEEECSSCCSSSSEECSCHHHHHHHCSEEEECSCTTTHHHHHHHSGGGC
T ss_pred CCEEEEECcCHHHH-HHHHHHHHCCCCCCCeEEEEeCCcccCceEEeCCHHHHHhcCCEEEEEeCHHHHHHHHHHHHHhc
Confidence 58999999999999 4655432211 111 01578777788888999999999999999999999999888
Q ss_pred CCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEcCCCCchh
Q psy6714 201 NESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYLLDG 280 (303)
Q Consensus 201 ~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~vdE~~~Da 280 (303)
++++||++++|++.+.+++.++...++++++|++|...+.|.+++++++..+++..+.++++|+.+|.+++++|+.||.
T Consensus 83 -~~~~vv~~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~~~~~~~~~~~~~~ll~~~G~~~~~~~~~~~~ 161 (262)
T 2rcy_A 83 -SSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKDMDI 161 (262)
T ss_dssp -TTCEEEECCSSCCHHHHHHHHCTTSEEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTSEEEEECCGGGHHH
T ss_pred -CCCEEEEECCCCCHHHHHHHhCCCCcEEEECCChHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHHccH
Confidence 6778999999999999999887544789999999999988877788877778999999999999999988889999999
Q ss_pred hhhhccchHHHHHHHHHhhh
Q psy6714 281 ITGLSGSGPAYRYEVTSNEV 300 (303)
Q Consensus 281 ~tAlsGsgPAf~~~~ie~~~ 300 (303)
++++++|+|+|++.+++++.
T Consensus 162 ~~a~~~~~~~~~~~~~~al~ 181 (262)
T 2rcy_A 162 ATAISGCGPAYVYLFIESLI 181 (262)
T ss_dssp HHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHH
Confidence 99999999999999999875
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-22 Score=181.34 Aligned_cols=165 Identities=22% Similarity=0.359 Sum_probs=139.0
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh----------hcHHH---Hh-hCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN----------IVSKA---TG-TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~----------r~~e~---l~-e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
+||||+|||+|.||. .++..+. +..++ +. ++|+.+..+..++++++|+||+|||++.+.+++.++
T Consensus 2 ~~m~i~iiG~G~mG~-~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~~~~~~~v~~~l 80 (259)
T 2ahr_A 2 NAMKIGIIGVGKMAS-AIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKPQLFETVLKPL 80 (259)
T ss_dssp -CCEEEEECCSHHHH-HHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCGGGHHHHHTTS
T ss_pred CccEEEEECCCHHHH-HHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeCcHhHHHHHHHh
Confidence 478999999999999 4655432 22222 33 348877778888899999999999999999998776
Q ss_pred ccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEcCCC
Q psy6714 197 KPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEY 276 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~vdE~ 276 (303)
. ++++||++.+|++.+.+++.++.+.++++.||++|..+++|.+.++.+...+++..+.++++|+.+|.+++++++
T Consensus 81 ~----~~~~vv~~~~~~~~~~l~~~~~~~~~~v~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll~~~G~~~~~~~~ 156 (259)
T 2ahr_A 81 H----FKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFGSTFDISEK 156 (259)
T ss_dssp C----CCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTEEEEECCGG
T ss_pred c----cCCEEEEeCCCCCHHHHHHhcCCCCCEEEEcCCchHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCCCEEEecHH
Confidence 4 677999999999999999888755589999999999998888877877777899999999999999988888999
Q ss_pred CchhhhhhccchHHHHHHHHHhhh
Q psy6714 277 LLDGITGLSGSGPAYRYEVTSNEV 300 (303)
Q Consensus 277 ~~Da~tAlsGsgPAf~~~~ie~~~ 300 (303)
+||.+++++||+|+|++.+++++.
T Consensus 157 ~~d~~~al~g~~~~~~~~~~~~la 180 (259)
T 2ahr_A 157 DFDTFTALAGSSPAYIYLFIEALA 180 (259)
T ss_dssp GHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HccHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999998874
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=9e-22 Score=177.82 Aligned_cols=163 Identities=29% Similarity=0.440 Sum_probs=137.5
Q ss_pred CcEEEEcCChhhHHHHHHHHh-----------hcHH---HHhh-CCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhc
Q psy6714 133 SDKQIAGTTERGPGALIASLN-----------IVSK---ATGT-MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~-----------r~~e---~l~e-~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~ 197 (303)
|||+|||+|.||.. ++..+. +..+ .+.+ +|+.+..++.+++ ++|+||+|||++++.+++.++.
T Consensus 1 m~i~iiG~G~mG~~-~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~~~~~~~v~~~l~ 78 (263)
T 1yqg_A 1 MNVYFLGGGNMAAA-VAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVKPQDMEAACKNIR 78 (263)
T ss_dssp CEEEEECCSHHHHH-HHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSCHHHHHHHHTTCC
T ss_pred CEEEEECchHHHHH-HHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeCchhHHHHHHHhc
Confidence 78999999999994 554321 1122 2333 5888877888888 9999999999999999999887
Q ss_pred cccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEcC-CC
Q psy6714 198 PVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVP-EY 276 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~vd-E~ 276 (303)
+ + +++||++++|++.+.|++.++.+..+++++||+|..++.|.+.++.+...+++..+.+.++|+.+|..++++ ++
T Consensus 79 ~--~-~~ivv~~~~g~~~~~l~~~~~~~~~~v~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 155 (263)
T 1yqg_A 79 T--N-GALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTVWLDDEE 155 (263)
T ss_dssp C--T-TCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEEEEECSSTT
T ss_pred c--C-CCEEEEecCCCCHHHHHHHcCCCCcEEEEcCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCCCEEEeCChh
Confidence 6 4 889999999999999999887645789999999998888888777776668899999999999999888888 89
Q ss_pred CchhhhhhccchHHHHHHHHHhhh
Q psy6714 277 LLDGITGLSGSGPAYRYEVTSNEV 300 (303)
Q Consensus 277 ~~Da~tAlsGsgPAf~~~~ie~~~ 300 (303)
.||.++|++||+|+|++.+++++.
T Consensus 156 ~~~~~~al~g~~~~~~~~~~~~l~ 179 (263)
T 1yqg_A 156 KMHGITGISGSGPAYVFYLLDALQ 179 (263)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred hccHHHHHHccHHHHHHHHHHHHH
Confidence 999999999999999999998764
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.7e-21 Score=188.64 Aligned_cols=170 Identities=12% Similarity=0.141 Sum_probs=137.8
Q ss_pred cCC-CcEEEEcCChhhHHHHHHHHhhc--------------------HHHHhhCCCeE----ecChHHhhcCCCEEEEee
Q psy6714 130 WNR-SDKQIAGTTERGPGALIASLNIV--------------------SKATGTMGAKI----TFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 130 ~~~-mkIgIIGlG~MG~~~La~al~r~--------------------~e~l~e~Gv~v----~~d~~eav~~ADIVILAV 184 (303)
+.. +||||||+|+||.+ ++..+... .+.+.+.|+.+ ..++.+++++||+|||+|
T Consensus 51 L~GiKkIgIIGlGsMG~A-mA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaV 129 (525)
T 3fr7_A 51 FKGIKQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLI 129 (525)
T ss_dssp TTTCSEEEEECCTTHHHH-HHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECS
T ss_pred hcCCCEEEEEeEhHHHHH-HHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECC
Confidence 345 89999999999994 55443221 12344678764 367889999999999999
Q ss_pred CCccHHHHHHhhccccCCCCEEEEecCCCcHHHHHh---hCCCCCceEEEecCcHHhh-------h-----CCcE-EEEe
Q psy6714 185 KPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQ---ALPKNSRIIRAMPNTPALV-------R-----QGAS-VFVR 248 (303)
Q Consensus 185 pP~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~---~l~~~~~VVr~mPn~p~~v-------~-----~G~t-il~~ 248 (303)
|+....+++.+|.++++++++ |++++|+++..+++ .++.+.+|+++|||+|..+ + .|++ +++.
T Consensus 130 P~~~~~eVl~eI~p~LK~GaI-Ls~AaGf~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~liAv 208 (525)
T 3fr7_A 130 SDAAQADNYEKIFSHMKPNSI-LGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 208 (525)
T ss_dssp CHHHHHHHHHHHHHHSCTTCE-EEESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEEEEE
T ss_pred ChHHHHHHHHHHHHhcCCCCe-EEEeCCCCHHHHhhhcccCCCCCcEEEEecCCCchhHHHHHhcccccccCCccEEEEc
Confidence 999999999999999999987 78999999998886 5666789999999999876 4 6887 6666
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcEE--------cCCCCchhhhhhccchHHHHHHHHHhhhh
Q psy6714 249 GSSASDQDAQTVINLFKSVGTCEE--------VPEYLLDGITGLSGSGPAYRYEVTSNEVI 301 (303)
Q Consensus 249 g~~~~~e~~e~V~~Lfs~iG~~v~--------vdE~~~Da~tAlsGsgPAf~~~~ie~~~~ 301 (303)
..+.+.++++.+..+|+.+|.... ..++.|+..++++||+|||+-..+|.++.
T Consensus 209 ~qd~tgea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqtvLsG~~pAlieA~~d~lVe 269 (525)
T 3fr7_A 209 HQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVEALFRRYTE 269 (525)
T ss_dssp EECSSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHhhhcCcHHHHHHHHHHHHHH
Confidence 667788899999999999998633 12357888899999999999999998875
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.1e-20 Score=172.07 Aligned_cols=163 Identities=15% Similarity=0.189 Sum_probs=125.9
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh------------cH---HHHhhCCC--eEecChHH-hhcCCCEEEEeeCCccHHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI------------VS---KATGTMGA--KITFDNKE-VTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r------------~~---e~l~e~Gv--~v~~d~~e-av~~ADIVILAVpP~~v~~V 192 (303)
+.|||+|||+|+||+ +++..+.. .. +.+.+.|+ ....++.+ ++++||+||+|||++.+.++
T Consensus 32 ~~~kI~IIG~G~mG~-slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~~~~~v 110 (314)
T 3ggo_A 32 SMQNVLIVGVGFMGG-SFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREI 110 (314)
T ss_dssp SCSEEEEESCSHHHH-HHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGGGHHHH
T ss_pred CCCEEEEEeeCHHHH-HHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHHHHHHH
Confidence 458999999999999 56655321 12 23456777 45678888 89999999999999999999
Q ss_pred HHhhccccCCCCEEEEecCCCc---HHHHHhhCCCCCceEEEecCcHHhhh----------CC-cEEEEeCCCCCHHHHH
Q psy6714 193 LNDIKPVFNESNLLISVAGGVP---IKNMEQALPKNSRIIRAMPNTPALVR----------QG-ASVFVRGSSASDQDAQ 258 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSiaaGV~---ie~L~~~l~~~~~VVr~mPn~p~~v~----------~G-~til~~g~~~~~e~~e 258 (303)
++++.++++++++|+++ ++++ .+.+.+.++. .++..+|..+.+.. .| .+++++++..+++.++
T Consensus 111 l~~l~~~l~~~~iv~d~-~Svk~~~~~~~~~~l~~--~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~~~~~~ 187 (314)
T 3ggo_A 111 AKKLSYILSEDATVTDQ-GSVKGKLVYDLENILGK--RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLK 187 (314)
T ss_dssp HHHHHHHSCTTCEEEEC-CSCCTHHHHHHHHHHGG--GEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTTSCHHHHH
T ss_pred HHHHhhccCCCcEEEEC-CCCcHHHHHHHHHhcCC--CEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCCCCHHHHH
Confidence 99999989888877654 5665 3456666653 66777776543211 34 5677777777999999
Q ss_pred HHHHHHHhcCC-cEEcCCCCchhhhhhccchHHHHHHHHH
Q psy6714 259 TVINLFKSVGT-CEEVPEYLLDGITGLSGSGPAYRYEVTS 297 (303)
Q Consensus 259 ~V~~Lfs~iG~-~v~vdE~~~Da~tAlsGsgPAf~~~~ie 297 (303)
.++++|+.+|. ++++++++||.++|+++++|+|+++.+-
T Consensus 188 ~v~~l~~~~G~~v~~~~~~~hD~~~a~~s~lph~~a~~l~ 227 (314)
T 3ggo_A 188 LVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFALV 227 (314)
T ss_dssp HHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 5778999999999999999999966653
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.2e-20 Score=169.32 Aligned_cols=167 Identities=14% Similarity=0.216 Sum_probs=131.5
Q ss_pred CCCcEEEEcC-ChhhHHHHHHHHh----------hcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 131 NRSDKQIAGT-TERGPGALIASLN----------IVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 131 ~~mkIgIIGl-G~MG~~~La~al~----------r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
+||||+|||+ |.||. .++..+. +..+ .+.+.|+.. .++.++++++|+||+|||++.+.++++++
T Consensus 10 mmm~I~iIG~tG~mG~-~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~-~~~~~~~~~aDvVi~av~~~~~~~v~~~l 87 (286)
T 3c24_A 10 GPKTVAILGAGGKMGA-RITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPL-TDGDGWIDEADVVVLALPDNIIEKVAEDI 87 (286)
T ss_dssp CCCEEEEETTTSHHHH-HHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCC-CCSSGGGGTCSEEEECSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCHHHH-HHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCc-CCHHHHhcCCCEEEEcCCchHHHHHHHHH
Confidence 4679999999 99999 4555431 2222 344567655 36677889999999999999999999999
Q ss_pred ccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHh--------hhCC-------cEEEEeCCCCCHHHHHHHH
Q psy6714 197 KPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPAL--------VRQG-------ASVFVRGSSASDQDAQTVI 261 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~--------v~~G-------~til~~g~~~~~e~~e~V~ 261 (303)
.+.++++++||++++|.+.+.+.+..+ +..+++.||+.+.. ...| .+.++.....+++..+.++
T Consensus 88 ~~~l~~~~ivv~~s~~~~~~~l~~~~~-~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~~~~~~~~v~ 166 (286)
T 3c24_A 88 VPRVRPGTIVLILDAAAPYAGVMPERA-DITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGA 166 (286)
T ss_dssp GGGSCTTCEEEESCSHHHHHTCSCCCT-TSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEEEESCTHHHHHHH
T ss_pred HHhCCCCCEEEECCCCchhHHHHhhhC-CCeEEecCCCCccccccccchhhccCcccccccceeeeeccCCCHHHHHHHH
Confidence 988888999999888887766665333 46789999998765 5666 3444333335788999999
Q ss_pred HHHHhcCC----cEEcCCCCchhh-hhhc-cchHHHHHHHHHhhh
Q psy6714 262 NLFKSVGT----CEEVPEYLLDGI-TGLS-GSGPAYRYEVTSNEV 300 (303)
Q Consensus 262 ~Lfs~iG~----~v~vdE~~~Da~-tAls-GsgPAf~~~~ie~~~ 300 (303)
++|+.+|. +++++++++|.+ ++++ +++++|++.++|+++
T Consensus 167 ~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~ 211 (286)
T 3c24_A 167 DICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVD 211 (286)
T ss_dssp HHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 688898899999 8887 899999999999875
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-19 Score=164.81 Aligned_cols=156 Identities=13% Similarity=0.104 Sum_probs=113.0
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhcHHHHhhCCCe--Ee-----cChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCC
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIVSKATGTMGAK--IT-----FDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNES 203 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~~e~l~e~Gv~--v~-----~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g 203 (303)
++||+||| +|+||+ .++..+.. .|.. +. .++.+++++||+||||||++.+.+++.++.++++++
T Consensus 21 ~~~I~iIGg~G~mG~-~la~~l~~-------~G~~V~~~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l~~~l~~~ 92 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGG-LFARYLRA-------SGYPISILDREDWAVAESILANADVVIVSVPINLTLETIERLKPYLTEN 92 (298)
T ss_dssp CCCEEEETTTSHHHH-HHHHHHHT-------TTCCEEEECTTCGGGHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTT
T ss_pred CCEEEEEcCCCHHHH-HHHHHHHh-------CCCeEEEEECCcccCHHHHhcCCCEEEEeCCHHHHHHHHHHHHhhcCCC
Confidence 46899999 999999 57655432 2322 21 245678899999999999999999999999888888
Q ss_pred CEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHh-----hhCC-cEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEcCCC
Q psy6714 204 NLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPAL-----VRQG-ASVFVRGSSASDQDAQTVINLFKSVGTC-EEVPEY 276 (303)
Q Consensus 204 ~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~-----v~~G-~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~vdE~ 276 (303)
++ |+.+++++...++.+... .. .+++|++|+. ...| .++++++. +++..+.++++|+.+|.. ++++++
T Consensus 93 ~i-v~~~~svk~~~~~~~~~~-~~-~~~v~~hP~~g~~~~~~~g~~~~l~~~~--~~~~~~~v~~l~~~~G~~~~~~~~~ 167 (298)
T 2pv7_A 93 ML-LADLTSVKREPLAKMLEV-HT-GAVLGLHPMFGADIASMAKQVVVRCDGR--FPERYEWLLEQIQIWGAKIYQTNAT 167 (298)
T ss_dssp SE-EEECCSCCHHHHHHHHHH-CS-SEEEEEEECSCTTCSCCTTCEEEEEEEE--CGGGTHHHHHHHHHTTCEEEECCHH
T ss_pred cE-EEECCCCCcHHHHHHHHh-cC-CCEEeeCCCCCCCchhhcCCeEEEecCC--CHHHHHHHHHHHHHcCCEEEECCHH
Confidence 75 456678886544443221 11 2455555431 1123 45666653 677889999999999985 567889
Q ss_pred CchhhhhhccchHHHH-HHHHHhhh
Q psy6714 277 LLDGITGLSGSGPAYR-YEVTSNEV 300 (303)
Q Consensus 277 ~~Da~tAlsGsgPAf~-~~~ie~~~ 300 (303)
+||.+++++|++|+|+ |.|++++.
T Consensus 168 ~~d~~~a~~~~~p~~~a~~l~~~l~ 192 (298)
T 2pv7_A 168 EHDHNMTYIQALRHFSTFANGLHLS 192 (298)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999995 67777664
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.3e-19 Score=167.28 Aligned_cols=160 Identities=14% Similarity=0.052 Sum_probs=120.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----------hcH---HHHhhCCCeEecChHHhhc----CCCEEEEeeCCccHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLN----------IVS---KATGTMGAKITFDNKEVTL----NSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~----------r~~---e~l~e~Gv~v~~d~~eav~----~ADIVILAVpP~~v~~VL~ 194 (303)
.+||+|||+|+||+ +|+..+. +.. +.+.+.|+....++.++++ +||+||||||++.+.++++
T Consensus 8 ~~kIgIIG~G~mG~-slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~~~~~~vl~ 86 (341)
T 3ktd_A 8 SRPVCILGLGLIGG-SLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPMTAIDSLLD 86 (341)
T ss_dssp SSCEEEECCSHHHH-HHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCHHHHHHHHH
T ss_pred CCEEEEEeecHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCHHHHHHHHH
Confidence 57899999999999 5776542 222 2345788887788877765 4799999999999999999
Q ss_pred hhccccCCCCEEEEecCCCcHHH---HHhhCCCCCceEEEecCcHHhhh-------------CC-cEEEEeCCCCCHH--
Q psy6714 195 DIKPVFNESNLLISVAGGVPIKN---MEQALPKNSRIIRAMPNTPALVR-------------QG-ASVFVRGSSASDQ-- 255 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV~ie~---L~~~l~~~~~VVr~mPn~p~~v~-------------~G-~til~~g~~~~~e-- 255 (303)
++.++ +++++ |+++++++... +.+.++ .. +++|+||+... .| .+++++++..+++
T Consensus 87 ~l~~~-~~~~i-v~Dv~Svk~~i~~~~~~~~~-~~---~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~e~~ 160 (341)
T 3ktd_A 87 AVHTH-APNNG-FTDVVSVKTAVYDAVKARNM-QH---RYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLFDGTDI 160 (341)
T ss_dssp HHHHH-CTTCC-EEECCSCSHHHHHHHHHTTC-GG---GEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSSCCC
T ss_pred HHHcc-CCCCE-EEEcCCCChHHHHHHHHhCC-CC---cEecCCccccccccchhhhhhHHhcCCeEEEEeCCCCChhhh
Confidence 99875 67765 55678888754 444443 23 44444444322 12 4677777666666
Q ss_pred ------HHHHHHHHHHhcCC-cEEcCCCCchhhhhhccchHHHHHHHHHh
Q psy6714 256 ------DAQTVINLFKSVGT-CEEVPEYLLDGITGLSGSGPAYRYEVTSN 298 (303)
Q Consensus 256 ------~~e~V~~Lfs~iG~-~v~vdE~~~Da~tAlsGsgPAf~~~~ie~ 298 (303)
.++.+++||+.+|. ++++++++||.++|++|++|+|+++.+-.
T Consensus 161 ~~~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~A~vshlPh~ia~aL~~ 210 (341)
T 3ktd_A 161 NSTWISIWKDVVQMALAVGAEVVPSRVGPHDAAAARVSHLTHILAETLAI 210 (341)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 88999999999995 67889999999999999999999887643
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-18 Score=158.06 Aligned_cols=165 Identities=16% Similarity=0.140 Sum_probs=120.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh------------cHH---HHhhCCC--eEecChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI------------VSK---ATGTMGA--KITFDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r------------~~e---~l~e~Gv--~v~~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
+|||+|||+|.||. .++..+.. ..+ .+.+.|+ ....++.++++++|+||+|||++.+.+++.
T Consensus 6 ~~~I~iIG~G~mG~-~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~v~~ 84 (290)
T 3b1f_A 6 EKTIYIAGLGLIGA-SLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKKTIDFIK 84 (290)
T ss_dssp CCEEEEECCSHHHH-HHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHHHHHHHH
T ss_pred cceEEEEeeCHHHH-HHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHHHHHHHH
Confidence 58999999999999 45544321 122 3345676 456777788899999999999999999999
Q ss_pred hhccc-cCCCCEEEEecCCCcH---HHHHhhCCCCCceEEEecCcHH------hhh-------CCc-EEEEeCCCCCHHH
Q psy6714 195 DIKPV-FNESNLLISVAGGVPI---KNMEQALPKNSRIIRAMPNTPA------LVR-------QGA-SVFVRGSSASDQD 256 (303)
Q Consensus 195 eI~~~-L~~g~IVVSiaaGV~i---e~L~~~l~~~~~VVr~mPn~p~------~v~-------~G~-til~~g~~~~~e~ 256 (303)
++.++ ++++++|| .+++++. +.+.+.++. ..++++|++|+ .+. .|. +++++....+++.
T Consensus 85 ~l~~~~l~~~~ivi-~~~~~~~~~~~~l~~~l~~--~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~~~~ 161 (290)
T 3b1f_A 85 ILADLDLKEDVIIT-DAGSTKYEIVRAAEYYLKD--KPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTKPNT 161 (290)
T ss_dssp HHHTSCCCTTCEEE-CCCSCHHHHHHHHHHHHTT--SSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCCTTH
T ss_pred HHHhcCCCCCCEEE-ECCCCchHHHHHHHHhccc--cCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCCHHH
Confidence 99888 88888777 4456654 567777763 13455665554 122 343 5677766667888
Q ss_pred HHHHHHHHHhcCCc-EEcCCCCchhh-hhhccchHHHHHHHHHhhh
Q psy6714 257 AQTVINLFKSVGTC-EEVPEYLLDGI-TGLSGSGPAYRYEVTSNEV 300 (303)
Q Consensus 257 ~e~V~~Lfs~iG~~-v~vdE~~~Da~-tAlsGsgPAf~~~~ie~~~ 300 (303)
.+.++++|+.+|.. +++++++||.+ +++++++|+|.+.|++.+.
T Consensus 162 ~~~v~~l~~~~G~~~~~~~~~~~d~~~a~~s~~~~~~a~~~~~~~~ 207 (290)
T 3b1f_A 162 IPALQDLLSGLHARYVEIDAAEHDCVTSQISHFPHIIASSLMKQAG 207 (290)
T ss_dssp HHHHHHHTGGGCCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999986 46788889987 5556777777778887653
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-18 Score=163.76 Aligned_cols=166 Identities=19% Similarity=0.188 Sum_probs=127.4
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh----------c----HHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHH-h
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI----------V----SKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALN-D 195 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r----------~----~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~-e 195 (303)
.+|+|+|||+|+||+ .++..+.. . .+.+.+.|+.+. +..+++++||+||+|||++.+.+++. +
T Consensus 15 ~~~~I~IIG~G~mG~-alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~~~~~v~~~~ 92 (338)
T 1np3_A 15 QGKKVAIIGYGSQGH-AHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEFQGRLYKEE 92 (338)
T ss_dssp HTSCEEEECCSHHHH-HHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHHHHHHHHHH
T ss_pred cCCEEEEECchHHHH-HHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcHHHHHHHHHH
Confidence 468999999999999 56655321 1 123446788765 88888999999999999999999998 9
Q ss_pred hccccCCCCEEEEecCCCcHHHHHhhC-CCCCceEEEecCcHHh-------hhCCcEE-EEeCCCCCHHHHHHHHHHHHh
Q psy6714 196 IKPVFNESNLLISVAGGVPIKNMEQAL-PKNSRIIRAMPNTPAL-------VRQGASV-FVRGSSASDQDAQTVINLFKS 266 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~ie~L~~~l-~~~~~VVr~mPn~p~~-------v~~G~ti-l~~g~~~~~e~~e~V~~Lfs~ 266 (303)
+.++++++++||+ ++|++. .+.... +.+..+++.||+.|.. ++.|.+. +++....+++..+.+..+|+.
T Consensus 93 i~~~l~~~~ivi~-~~gv~~-~~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~a~~~~~~l~~~ 170 (338)
T 1np3_A 93 IEPNLKKGATLAF-AHGFSI-HYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVALSYACG 170 (338)
T ss_dssp TGGGCCTTCEEEE-SCCHHH-HTTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEECSSSCHHHHHHHHHHH
T ss_pred HHhhCCCCCEEEE-cCCchh-HHHhhcCCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 9988988998885 578877 555554 3345689999987753 3446654 466555677888999999999
Q ss_pred cCC----cEEcC---CCCchhh---hhhccchHHHHHHHHHhhh
Q psy6714 267 VGT----CEEVP---EYLLDGI---TGLSGSGPAYRYEVTSNEV 300 (303)
Q Consensus 267 iG~----~v~vd---E~~~Da~---tAlsGsgPAf~~~~ie~~~ 300 (303)
+|. +++++ ++++|.+ ++++|++|+|++.+++.|+
T Consensus 171 lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~ 214 (338)
T 1np3_A 171 VGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLV 214 (338)
T ss_dssp TTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred cCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 998 56665 3456677 4788999999999998776
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.74 E-value=9.3e-18 Score=153.29 Aligned_cols=162 Identities=16% Similarity=0.195 Sum_probs=119.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh------------cHH---HHhhCCCe--EecChHHhhc-CCCEEEEeeCCccHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI------------VSK---ATGTMGAK--ITFDNKEVTL-NSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r------------~~e---~l~e~Gv~--v~~d~~eav~-~ADIVILAVpP~~v~~VL 193 (303)
||||+|||+|.||. .++..+.. ..+ .+.+.|+. ...++.++++ ++|+||+|||++.+.+++
T Consensus 1 m~~I~iIG~G~mG~-~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~~~~~v~ 79 (281)
T 2g5c_A 1 MQNVLIVGVGFMGG-SFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIA 79 (281)
T ss_dssp CCEEEEESCSHHHH-HHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHH
T ss_pred CcEEEEEecCHHHH-HHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHHHHHHHH
Confidence 57899999999999 46554321 112 23456774 4567778888 999999999999999999
Q ss_pred HhhccccCCCCEEEEecCCCcH---HHHHhhCCCCCceEEEecCcHHhh-------------hCCc-EEEEeCCCCCHHH
Q psy6714 194 NDIKPVFNESNLLISVAGGVPI---KNMEQALPKNSRIIRAMPNTPALV-------------RQGA-SVFVRGSSASDQD 256 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaGV~i---e~L~~~l~~~~~VVr~mPn~p~~v-------------~~G~-til~~g~~~~~e~ 256 (303)
.++.++++++++|++ +++++. +.+.+.++. . ++|++|+.. ..|. +++++....+++.
T Consensus 80 ~~l~~~l~~~~iv~~-~~~~~~~~~~~l~~~l~~--~---~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~~~~ 153 (281)
T 2g5c_A 80 KKLSYILSEDATVTD-QGSVKGKLVYDLENILGK--R---FVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKR 153 (281)
T ss_dssp HHHHHHSCTTCEEEE-CCSCCTHHHHHHHHHHGG--G---EECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHH
T ss_pred HHHHhhCCCCcEEEE-CCCCcHHHHHHHHHhccc--c---ceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCCHHH
Confidence 999888888876665 445543 456666653 2 344433221 2455 6666665678899
Q ss_pred HHHHHHHHHhcCCc-EEcCCCCchhhhhhccchHHHH-HHHHHhhh
Q psy6714 257 AQTVINLFKSVGTC-EEVPEYLLDGITGLSGSGPAYR-YEVTSNEV 300 (303)
Q Consensus 257 ~e~V~~Lfs~iG~~-v~vdE~~~Da~tAlsGsgPAf~-~~~ie~~~ 300 (303)
.+.++++|+.+|.. ++++++.||.+++++|++|+|+ +.|++++.
T Consensus 154 ~~~v~~l~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~a~~~~~~~~ 199 (281)
T 2g5c_A 154 LKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFALVDTLI 199 (281)
T ss_dssp HHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999985 5678888999999999999995 77777764
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.74 E-value=7.4e-18 Score=153.55 Aligned_cols=161 Identities=12% Similarity=0.087 Sum_probs=116.9
Q ss_pred CcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCCC--eEecChHHhhcCCCEEEEeeCCccHHHHHHhhc
Q psy6714 133 SDKQIAGTTERGPGALIASLN----------IVSK---ATGTMGA--KITFDNKEVTLNSEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~Gv--~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~ 197 (303)
|||+|||+|.||. .++..+. +..+ .+.+.|+ ....++.++ +++|+||+|||++.+.+++.++.
T Consensus 1 m~i~iiG~G~~G~-~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~~~~~~~~~~l~ 78 (279)
T 2f1k_A 1 MKIGVVGLGLIGA-SLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPIQLILPTLEKLI 78 (279)
T ss_dssp CEEEEECCSHHHH-HHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCHHHHHHHHHHHG
T ss_pred CEEEEEcCcHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCHHHHHHHHHHHH
Confidence 7899999999999 4655432 2222 3445676 355677777 89999999999999999999999
Q ss_pred cccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHh----------hhCC-cEEEEeCCCCCHHHHHHHHHHHHh
Q psy6714 198 PVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPAL----------VRQG-ASVFVRGSSASDQDAQTVINLFKS 266 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~----------v~~G-~til~~g~~~~~e~~e~V~~Lfs~ 266 (303)
++++++++||++ ++++...++.+......++..+|..... +..+ .++++++...+++..+.++++|+.
T Consensus 79 ~~~~~~~~vv~~-~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~~~~~v~~l~~~ 157 (279)
T 2f1k_A 79 PHLSPTAIVTDV-ASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEP 157 (279)
T ss_dssp GGSCTTCEEEEC-CSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHHGG
T ss_pred hhCCCCCEEEEC-CCCcHHHHHHHHHHhCCEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHHHHHHHHHHHHH
Confidence 888889998886 6676654443321101344444432101 1123 567777666689999999999999
Q ss_pred cCC-cEEcCCCCchhhhhhccchHHHHHHHH
Q psy6714 267 VGT-CEEVPEYLLDGITGLSGSGPAYRYEVT 296 (303)
Q Consensus 267 iG~-~v~vdE~~~Da~tAlsGsgPAf~~~~i 296 (303)
+|. ++++++..+|.++++++++|+|++.-+
T Consensus 158 ~g~~~~~~~~~~~~~~~~~~~~~p~~i~~al 188 (279)
T 2f1k_A 158 LGVKIYLCTPADHDQAVAWISHLPVMVSAAL 188 (279)
T ss_dssp GTCEEEECCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cCCEEEEcCHHHHHHHHHHHhhHHHHHHHHH
Confidence 996 677788899999999999999988744
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-17 Score=150.03 Aligned_cols=161 Identities=20% Similarity=0.276 Sum_probs=120.0
Q ss_pred CCCcEEEEcCChhhHHHHHHHH----------hhcHH---HHhhCCCeEec------------ChHHhhc---CCCEEEE
Q psy6714 131 NRSDKQIAGTTERGPGALIASL----------NIVSK---ATGTMGAKITF------------DNKEVTL---NSEVIIL 182 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e~Gv~v~~------------d~~eav~---~ADIVIL 182 (303)
+||||+|||+|.||. .++..+ ++..+ .+.+.|+.+.. +..++.+ ++|+||+
T Consensus 2 ~~m~i~iiG~G~~G~-~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (316)
T 2ew2_A 2 NAMKIAIAGAGAMGS-RLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIA 80 (316)
T ss_dssp --CEEEEECCSHHHH-HHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEE
T ss_pred CCCeEEEECcCHHHH-HHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEE
Confidence 468999999999999 455442 12222 33344654321 3344444 8999999
Q ss_pred eeCCccHHHHHHhhccccCCCCEEEEecCCCcH-HHHHhhCCCCCceE---------EEecCcHHhhhCCcEEEEeCCCC
Q psy6714 183 AVKPHIVPVALNDIKPVFNESNLLISVAGGVPI-KNMEQALPKNSRII---------RAMPNTPALVRQGASVFVRGSSA 252 (303)
Q Consensus 183 AVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~i-e~L~~~l~~~~~VV---------r~mPn~p~~v~~G~til~~g~~~ 252 (303)
|||++.+.++++++.++++++++||++.+|+.. +.+.+.++. .+++ +.+|+.+...+.|.+.+......
T Consensus 81 ~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~~~~~-~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~~~~~ 159 (316)
T 2ew2_A 81 LTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVPK-ENILVGITMWTAGLEGPGRVKLLGDGEIELENIDPS 159 (316)
T ss_dssp CSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTTTSCG-GGEEEEEECCCCEEEETTEEEECSCCCEEEEESSGG
T ss_pred EeccccHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHHHcCC-ccEEEEEeeeeeEEcCCCEEEEecCCcEEEeecCCC
Confidence 999999999999999999889999999999986 668777764 2444 44677666666776666554455
Q ss_pred CHHHHHHHHHHHHhcCCcEEcCCCC-------------chhhhhhccchHHHHH
Q psy6714 253 SDQDAQTVINLFKSVGTCEEVPEYL-------------LDGITGLSGSGPAYRY 293 (303)
Q Consensus 253 ~~e~~e~V~~Lfs~iG~~v~vdE~~-------------~Da~tAlsGsgPAf~~ 293 (303)
+++..+.+.++|+.+|..+++.++. ++.++++.+|+|+|++
T Consensus 160 ~~~~~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~ 213 (316)
T 2ew2_A 160 GKKFALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFG 213 (316)
T ss_dssp GHHHHHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHH
T ss_pred ccHHHHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHH
Confidence 7888999999999999988777765 7888999999999875
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-16 Score=143.78 Aligned_cols=159 Identities=14% Similarity=0.172 Sum_probs=118.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHh-h-----c---------H---HHHhh-CCCeEec-------------ChHHhhcCCCE
Q psy6714 132 RSDKQIAGTTERGPGALIASLN-I-----V---------S---KATGT-MGAKITF-------------DNKEVTLNSEV 179 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~-r-----~---------~---e~l~e-~Gv~v~~-------------d~~eav~~ADI 179 (303)
+|||+|||+|.||+ .++..+. . . . +.+.+ .|+.+.. +..+.++++|+
T Consensus 8 ~m~I~iiG~G~mG~-~~a~~L~~~~~~~~g~~~V~~~~r~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 86 (317)
T 2qyt_A 8 PIKIAVFGLGGVGG-YYGAMLALRAAATDGLLEVSWIARGAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDY 86 (317)
T ss_dssp CEEEEEECCSHHHH-HHHHHHHHHHHHTTSSEEEEEECCHHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEE
T ss_pred CCEEEEECcCHHHH-HHHHHHHhCccccCCCCCEEEEEcHHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCE
Confidence 57999999999999 4554322 1 1 1 23445 6776543 44566789999
Q ss_pred EEEeeCCccHHHHHHhhccccCCCCEEEEecCCCcH-HHHHhhCCCCCceEEEecCcHHhhh---------CCcEEEEeC
Q psy6714 180 IILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPI-KNMEQALPKNSRIIRAMPNTPALVR---------QGASVFVRG 249 (303)
Q Consensus 180 VILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~i-e~L~~~l~~~~~VVr~mPn~p~~v~---------~G~til~~g 249 (303)
||+|||++++.++++++.+.++++++||++.+|+.. +.+.+.++. ..+++.++++++.+. .|...++..
T Consensus 87 vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~~l~~-~~v~~g~~~~~a~~~~pg~~~~~~~g~~~~ig~ 165 (317)
T 2qyt_A 87 ILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADIAERMRTYLPD-TVVWKGCVYISARKSAPGLITLEADRELFYFGS 165 (317)
T ss_dssp EEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTTTSCT-TTBCEEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred EEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHHHCCC-CcEEEEEEEEEEEEcCCCEEEEcCCCceEEEcC
Confidence 999999999999999999888788899999999987 678888874 467777777655432 232331222
Q ss_pred --CCCCHHHHHHHHHHHHhcCCcEEcCCC-------------CchhhhhhccchHHHHH
Q psy6714 250 --SSASDQDAQTVINLFKSVGTCEEVPEY-------------LLDGITGLSGSGPAYRY 293 (303)
Q Consensus 250 --~~~~~e~~e~V~~Lfs~iG~~v~vdE~-------------~~Da~tAlsGsgPAf~~ 293 (303)
+..+.+.. .+.++|+..|..+++.++ .++.++++.||++++++
T Consensus 166 ~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~ 223 (317)
T 2qyt_A 166 GLPEQTDDEV-RLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSIL 223 (317)
T ss_dssp CSSSCCHHHH-HHHHHHHHTTCCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCcCHHH-HHHHHHHHCCCCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHH
Confidence 23356777 899999999998888777 78899999999999985
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-16 Score=143.24 Aligned_cols=163 Identities=16% Similarity=0.186 Sum_probs=121.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHh-----------hcHHH---Hh-hCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 132 RSDKQIAGTTERGPGALIASLN-----------IVSKA---TG-TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~-----------r~~e~---l~-e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
+|||+|||+|.||.. ++..+. +..++ +. ..|+.+..+..++++++|+||+|||++.+.++++++
T Consensus 10 ~m~i~iiG~G~mG~~-~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~~~~~v~~~l 88 (266)
T 3d1l_A 10 DTPIVLIGAGNLATN-LAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDSAFAELLQGI 88 (266)
T ss_dssp GCCEEEECCSHHHHH-HHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHHHHHHHHHHH
T ss_pred CCeEEEEcCCHHHHH-HHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHHHHHHHHHHH
Confidence 589999999999994 554321 12222 32 348888788888889999999999999999999999
Q ss_pred ccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHh-----hhCCcEEEEeCCCCCHHHHHHHHHHHHhcCC-c
Q psy6714 197 KPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPAL-----VRQGASVFVRGSSASDQDAQTVINLFKSVGT-C 270 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~-----v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~-~ 270 (303)
.+.++++++||++++|++.+.+.+.++. ..+ .+|..|.. ...+..++..+ .+++..+.++++|+.+|. +
T Consensus 89 ~~~~~~~~ivv~~s~~~~~~~l~~~~~~-~~~--~~~~~~~~g~~~~~~~~~~~~v~~--~~~~~~~~~~~l~~~~g~~~ 163 (266)
T 3d1l_A 89 VEGKREEALMVHTAGSIPMNVWEGHVPH-YGV--FYPMQTFSKQREVDFKEIPFFIEA--SSTEDAAFLKAIASTLSNRV 163 (266)
T ss_dssp HTTCCTTCEEEECCTTSCGGGSTTTCSS-EEE--EEECCCC---CCCCCTTCCEEEEE--SSHHHHHHHHHHHHTTCSCE
T ss_pred HhhcCCCcEEEECCCCCchHHHHHHHHh-ccC--cCCceecCCCchhhcCCCeEEEec--CCHHHHHHHHHHHHhcCCcE
Confidence 8888889999999999998877776653 112 33333211 11233333322 378889999999999995 6
Q ss_pred EEcCCCC---chhhhhhccchHHHHHHHHHhhh
Q psy6714 271 EEVPEYL---LDGITGLSGSGPAYRYEVTSNEV 300 (303)
Q Consensus 271 v~vdE~~---~Da~tAlsGsgPAf~~~~ie~~~ 300 (303)
++++++. +|.++++++++|+|++.+++++.
T Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~eal~ 196 (266)
T 3d1l_A 164 YDADSEQRKSLHLAAVFTCNFTNHMYALAAELL 196 (266)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777554 89999999999999999999875
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=135.95 Aligned_cols=135 Identities=18% Similarity=0.338 Sum_probs=105.8
Q ss_pred CCcEEEEcCChhhHHHHHHHH-----------hhcHHH---H-hhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 132 RSDKQIAGTTERGPGALIASL-----------NIVSKA---T-GTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-----------~r~~e~---l-~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
||||+|||+|.||. .++..+ ++..++ + .+.|+....++.+.++++|+||+|||++.+.+++.++
T Consensus 23 mmkI~IIG~G~mG~-~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~l 101 (220)
T 4huj_A 23 MTTYAIIGAGAIGS-ALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPYDSIADIVTQV 101 (220)
T ss_dssp SCCEEEEECHHHHH-HHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCGGGHHHHHTTC
T ss_pred CCEEEEECCCHHHH-HHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCChHHHHHHHHHh
Confidence 68999999999999 455442 222222 2 2457766667777889999999999999999999999
Q ss_pred ccccCCCCEEEEecCCC--------------cHHHHHhhCCCCCceEEEecCcHHhhhC-C-------cEEEEeCCCCCH
Q psy6714 197 KPVFNESNLLISVAGGV--------------PIKNMEQALPKNSRIIRAMPNTPALVRQ-G-------ASVFVRGSSASD 254 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV--------------~ie~L~~~l~~~~~VVr~mPn~p~~v~~-G-------~til~~g~~~~~ 254 (303)
.+ + ++++||++++|+ ..+.+++.++ ..++++.|||++..+.. + ..+++.++ ++
T Consensus 102 ~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~~v~~~g~~~~~~~~~v~~~g~--~~ 176 (220)
T 4huj_A 102 SD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP-GAKVVKAFNTLPAAVLAADPDKGTGSRVLFLSGN--HS 176 (220)
T ss_dssp SC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST-TCEEEEESCSSCHHHHTSCSBCSSCEEEEEEEES--CH
T ss_pred hc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC-CCCEEECCCCCCHHHhhhCcccCCCCeeEEEeCC--CH
Confidence 87 5 588999999998 5788999998 47899999999877654 2 23444443 68
Q ss_pred HHHHHHHHHHHhcCCcEE
Q psy6714 255 QDAQTVINLFKSVGTCEE 272 (303)
Q Consensus 255 e~~e~V~~Lfs~iG~~v~ 272 (303)
+.++.+++||+.+|..++
T Consensus 177 ~~~~~v~~l~~~~G~~~~ 194 (220)
T 4huj_A 177 DANRQVAELISSLGFAPV 194 (220)
T ss_dssp HHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHhCCCeE
Confidence 999999999999998643
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-16 Score=146.99 Aligned_cols=162 Identities=8% Similarity=0.024 Sum_probs=107.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHH----------hhcHHH---Hh-hCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 131 NRSDKQIAGTTERGPGALIASL----------NIVSKA---TG-TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al----------~r~~e~---l~-e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
|||||+|||+|.||.+ ++..+ ++..++ +. ..|+ .+.++.++++++|+||+|||++.+.+++.++
T Consensus 1 M~m~I~iIG~G~mG~~-la~~l~~~~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~~~~~v~~~l 78 (276)
T 2i76_A 1 MSLVLNFVGTGTLTRF-FLECLKDRYEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDRYIKTVANHL 78 (276)
T ss_dssp ---CCEEESCCHHHHH-HHHTTC----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTTTHHHHHTTT
T ss_pred CCceEEEEeCCHHHHH-HHHHHHHcCcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChHHHHHHHHHh
Confidence 3689999999999994 55432 111222 22 4576 5667777888999999999999999999887
Q ss_pred ccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhh--CCcEEEEeCCCCCHHHHHHHHHHHHhcCC-cEEc
Q psy6714 197 KPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVR--QGASVFVRGSSASDQDAQTVINLFKSVGT-CEEV 273 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~--~G~til~~g~~~~~e~~e~V~~Lfs~iG~-~v~v 273 (303)
. .++++||+++++++.+.++..+......+..++|.+..+. .+.+.+..+ +++.++.++.||+.+|. ++++
T Consensus 79 ~---~~~~ivi~~s~~~~~~~l~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~lG~~~~~v 152 (276)
T 2i76_A 79 N---LGDAVLVHCSGFLSSEIFKKSGRASIHPNFSFSSLEKALEMKDQIVFGLEG---DERGLPIVKKIAEEISGKYFVI 152 (276)
T ss_dssp C---CSSCCEEECCSSSCGGGGCSSSEEEEEECSCC--CTTGGGCGGGCCEEECC---CTTTHHHHHHHHHHHCSCEEEC
T ss_pred c---cCCCEEEECCCCCcHHHHHHhhccccchhhhcCCCchhHHHhCCCeEEEEe---ChHHHHHHHHHHHHhCCCEEEE
Confidence 6 4788999998888887765542100011223556554443 444444443 34568999999999995 7888
Q ss_pred CCCC---chhhhhhccchHHHHHHHHHhhh
Q psy6714 274 PEYL---LDGITGLSGSGPAYRYEVTSNEV 300 (303)
Q Consensus 274 dE~~---~Da~tAlsGsgPAf~~~~ie~~~ 300 (303)
++++ ++..+++++++|++++.++..+.
T Consensus 153 ~~~~~~~~~~~~~l~~n~~~~~~~~a~~~~ 182 (276)
T 2i76_A 153 PSEKKKAYHLAAVIASNFPVALAYLSKRIY 182 (276)
T ss_dssp CGGGHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8654 56788899999999888776554
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.3e-15 Score=134.25 Aligned_cols=159 Identities=17% Similarity=0.213 Sum_probs=115.5
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH----------hhcHHH--------------H----hhCCCeEecChHHhhcCCCEEE
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL----------NIVSKA--------------T----GTMGAKITFDNKEVTLNSEVII 181 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al----------~r~~e~--------------l----~e~Gv~v~~d~~eav~~ADIVI 181 (303)
+..|||||||+|.||.+ |+..+ ++..++ + .+.|.....++.+++++||+||
T Consensus 17 ~~~~kIgiIG~G~mG~a-lA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDvVi 95 (245)
T 3dtt_A 17 FQGMKIAVLGTGTVGRT-MAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAELVV 95 (245)
T ss_dssp --CCEEEEECCSHHHHH-HHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCSEEE
T ss_pred cCCCeEEEECCCHHHHH-HHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCCEEE
Confidence 35789999999999994 55442 222333 1 1345556678889999999999
Q ss_pred EeeCCccHHHHHHhh-ccccCCCCEEEEecCCC----------------c-HHHHHhhCCCCCceEEEecCcHHhhhCC-
Q psy6714 182 LAVKPHIVPVALNDI-KPVFNESNLLISVAGGV----------------P-IKNMEQALPKNSRIIRAMPNTPALVRQG- 242 (303)
Q Consensus 182 LAVpP~~v~~VL~eI-~~~L~~g~IVVSiaaGV----------------~-ie~L~~~l~~~~~VVr~mPn~p~~v~~G- 242 (303)
+|||++.+.+++.++ .+.+ ++++||++++|+ . .+.+++.++. .++++.|+++++.+..+
T Consensus 96 lavp~~~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~-~~vv~~~~~~~a~v~~~~ 173 (245)
T 3dtt_A 96 NATEGASSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPE-AKVVKTLNTMNASLMVDP 173 (245)
T ss_dssp ECSCGGGHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTT-SEEEECSTTSCHHHHHCG
T ss_pred EccCcHHHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCC-CeEEEeecccCHHHhcCc
Confidence 999999999999988 7777 889999998654 2 3678888884 79999999987755432
Q ss_pred -------cEEEEeCCCCCHHHHHHHHHHHHhcCCc--EEcCCCCchhhhhhccchHHHHHHH
Q psy6714 243 -------ASVFVRGSSASDQDAQTVINLFKSVGTC--EEVPEYLLDGITGLSGSGPAYRYEV 295 (303)
Q Consensus 243 -------~til~~g~~~~~e~~e~V~~Lfs~iG~~--v~vdE~~~Da~tAlsGsgPAf~~~~ 295 (303)
.++++.++ +++.++.++++|+.+|.. +.+- .+.....+=.+.+-|+...
T Consensus 174 ~~a~~g~~~~~v~g~--d~~~~~~v~~ll~~~g~~~~~~~G--~~g~a~~~k~~~~~~~~l~ 231 (245)
T 3dtt_A 174 GRAAGGDHSVFVSGN--DAAAKAEVATLLKSLGHQDVIDLG--DITTARGAEMLLPVWIRLW 231 (245)
T ss_dssp GGTGGGCCCEEEECS--CHHHHHHHHHHHHHTTCCCEEEEE--SGGGHHHHHTTHHHHHHHH
T ss_pred cccCCCCeeEEEECC--CHHHHHHHHHHHHHcCCCceeccC--cHHHHHHhhhhHHHHHHHH
Confidence 23455443 689999999999999963 4443 3455566666666665554
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-15 Score=130.46 Aligned_cols=156 Identities=16% Similarity=0.214 Sum_probs=121.5
Q ss_pred CcEEEEc-CChhhHHHHHHHHh----------hcHHH---Hhh-CC-------CeEecChHHhhcCCCEEEEeeCCccHH
Q psy6714 133 SDKQIAG-TTERGPGALIASLN----------IVSKA---TGT-MG-------AKITFDNKEVTLNSEVIILAVKPHIVP 190 (303)
Q Consensus 133 mkIgIIG-lG~MG~~~La~al~----------r~~e~---l~e-~G-------v~v~~d~~eav~~ADIVILAVpP~~v~ 190 (303)
|||+||| +|.||.. ++..+. +..++ +.+ .| +. ..+..++++++|+||+|+|++.+.
T Consensus 1 m~i~iiGa~G~~G~~-ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~~~~~~ 78 (212)
T 1jay_A 1 MRVALLGGTGNLGKG-LALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIPWEHAI 78 (212)
T ss_dssp CEEEEETTTSHHHHH-HHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSCHHHHH
T ss_pred CeEEEEcCCCHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCChhhHH
Confidence 7899999 9999994 554421 22222 222 23 33 356677888999999999999999
Q ss_pred HHHHhhccccCCCCEEEEecCCCc--------------HHHHHhhCCCCCceEEEecCcHHhhhCC------cEEEEeCC
Q psy6714 191 VALNDIKPVFNESNLLISVAGGVP--------------IKNMEQALPKNSRIIRAMPNTPALVRQG------ASVFVRGS 250 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSiaaGV~--------------ie~L~~~l~~~~~VVr~mPn~p~~v~~G------~til~~g~ 250 (303)
+++.++.+.+ ++++||++++|++ .+.+.+.++. ..++++||+.+.....+ .++++.++
T Consensus 79 ~~~~~l~~~~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~ 156 (212)
T 1jay_A 79 DTARDLKNIL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES-EKVVSALHTIPAARFANLDEKFDWDVPVCGD 156 (212)
T ss_dssp HHHHHTHHHH-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC-SCEEECCTTCCHHHHHCTTCCCCEEEEEEES
T ss_pred HHHHHHHHHc-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC-CeEEEEccchHHHHhhCcCCCCCccEEEECC
Confidence 9999888777 4889999999988 6788888874 68999998887665443 56677764
Q ss_pred CCCHHHHHHHHHHHHhc-CCc-EEcCCCCchhhhhhccchHHHHHHHH
Q psy6714 251 SASDQDAQTVINLFKSV-GTC-EEVPEYLLDGITGLSGSGPAYRYEVT 296 (303)
Q Consensus 251 ~~~~e~~e~V~~Lfs~i-G~~-v~vdE~~~Da~tAlsGsgPAf~~~~i 296 (303)
+++..+.+.++|+.+ |.. +++.+ ++...++-+++|+|++..+
T Consensus 157 --~~~~~~~v~~l~~~~~G~~~~~~~~--~~~a~~~k~~~~~~~~~~~ 200 (212)
T 1jay_A 157 --DDESKKVVMSLISEIDGLRPLDAGP--LSNSRLVESLTPLILNIMR 200 (212)
T ss_dssp --CHHHHHHHHHHHHHSTTEEEEEEES--GGGHHHHHTHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHcCCCCceeccc--hhHHHHhcchHHHHHHHHH
Confidence 588999999999999 975 45654 6888999999999999887
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.2e-15 Score=135.31 Aligned_cols=150 Identities=12% Similarity=0.064 Sum_probs=113.8
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcHHHHhhCCCeEe--cChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEE
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNIVSKATGTMGAKIT--FDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLIS 208 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r~~e~l~e~Gv~v~--~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVS 208 (303)
.+|||+|||+|+||+ +|++.+. +.|..+. ..+ +.+++|| |||||++.+.+++.++.++++++++||+
T Consensus 5 ~~mkI~IIG~G~~G~-sLA~~L~-------~~G~~V~~~~~~-~~~~~aD--ilavP~~ai~~vl~~l~~~l~~g~ivvd 73 (232)
T 3dfu_A 5 PRLRVGIFDDGSSTV-NMAEKLD-------SVGHYVTVLHAP-EDIRDFE--LVVIDAHGVEGYVEKLSAFARRGQMFLH 73 (232)
T ss_dssp CCCEEEEECCSCCCS-CHHHHHH-------HTTCEEEECSSG-GGGGGCS--EEEECSSCHHHHHHHHHTTCCTTCEEEE
T ss_pred CCcEEEEEeeCHHHH-HHHHHHH-------HCCCEEEEecCH-HHhccCC--EEEEcHHHHHHHHHHHHHhcCCCCEEEE
Confidence 368999999999999 5765543 3355432 333 3478899 9999999999999999988889999999
Q ss_pred ecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCC-cEEcCCCCchhhhhhccc
Q psy6714 209 VAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGT-CEEVPEYLLDGITGLSGS 287 (303)
Q Consensus 209 iaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~-~v~vdE~~~Da~tAlsGs 287 (303)
+++.++.+.++.....+..++..||... ...+++.+ +++..+.++.|++.+|. +++++++++|.+.|.++.
T Consensus 74 ~sgs~~~~vl~~~~~~g~~fvg~HPm~g-----~~~~i~a~---d~~a~~~l~~L~~~lG~~vv~~~~~~hd~~~AAvsh 145 (232)
T 3dfu_A 74 TSLTHGITVMDPLETSGGIVMSAHPIGQ-----DRWVASAL---DELGETIVGLLVGELGGSIVEIADDKRAQLAAALTY 145 (232)
T ss_dssp CCSSCCGGGGHHHHHTTCEEEEEEEEET-----TEEEEEES---SHHHHHHHHHHHHHTTCEECCCCGGGHHHHHHHHHH
T ss_pred ECCcCHHHHHHHHHhCCCcEEEeeeCCC-----CceeeeCC---CHHHHHHHHHHHHHhCCEEEEeCHHHHhHHHHHHHH
Confidence 8888887766665443456777777632 23455554 67889999999999996 577899999999888877
Q ss_pred hHHHHHHHHHhh
Q psy6714 288 GPAYRYEVTSNE 299 (303)
Q Consensus 288 gPAf~~~~ie~~ 299 (303)
.|-.+.++.+++
T Consensus 146 ~nhLv~L~~~A~ 157 (232)
T 3dfu_A 146 AGFLSTLQRDAS 157 (232)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777766665553
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.3e-15 Score=136.63 Aligned_cols=158 Identities=15% Similarity=0.194 Sum_probs=113.0
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh-----------cHHHHhhCCCeEe-------------cChHHhhcCCCEEEEeeCC
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI-----------VSKATGTMGAKIT-------------FDNKEVTLNSEVIILAVKP 186 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r-----------~~e~l~e~Gv~v~-------------~d~~eav~~ADIVILAVpP 186 (303)
|+|||+|||+|.||+ .++..+.+ ..+.+.+.|+.+. .+..+.+..+|+||+|||+
T Consensus 1 M~mkI~IiGaGaiG~-~~a~~L~~~g~~V~~~~r~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~D~vilavk~ 79 (312)
T 3hn2_A 1 MSLRIAIVGAGALGL-YYGALLQRSGEDVHFLLRRDYEAIAGNGLKVFSINGDFTLPHVKGYRAPEEIGPMDLVLVGLKT 79 (312)
T ss_dssp ---CEEEECCSTTHH-HHHHHHHHTSCCEEEECSTTHHHHHHTCEEEEETTCCEEESCCCEESCHHHHCCCSEEEECCCG
T ss_pred CCCEEEEECcCHHHH-HHHHHHHHCCCeEEEEEcCcHHHHHhCCCEEEcCCCeEEEeeceeecCHHHcCCCCEEEEecCC
Confidence 358999999999999 56654321 1234555555321 1233457899999999999
Q ss_pred ccHHHHHHhhccccCCCCEEEEecCCCc-HHHHHhhCCCCCceEEEe---------cCcHHhhhCCcEEEEeCCCCCHHH
Q psy6714 187 HIVPVALNDIKPVFNESNLLISVAGGVP-IKNMEQALPKNSRIIRAM---------PNTPALVRQGASVFVRGSSASDQD 256 (303)
Q Consensus 187 ~~v~~VL~eI~~~L~~g~IVVSiaaGV~-ie~L~~~l~~~~~VVr~m---------Pn~p~~v~~G~til~~g~~~~~e~ 256 (303)
+++.++++++++++.++++||++++|+. .+.|.+.++. .++++.+ |++....+.|.+.+...+..+.+.
T Consensus 80 ~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~~-~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~~~~~~~ 158 (312)
T 3hn2_A 80 FANSRYEELIRPLVEEGTQILTLQNGLGNEEALATLFGA-ERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFLPRDTGR 158 (312)
T ss_dssp GGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHHHTCG-GGEEEEEEEEECCBCSSSEEEECEEEEEEEEESSCCCSHH
T ss_pred CCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCCCCccHH
Confidence 9999999999999989999999999997 5678888874 4677665 444333333333333323334567
Q ss_pred HHHHHHHHHhcCCcEEcCCCC-------------chhhhhhccchHH
Q psy6714 257 AQTVINLFKSVGTCEEVPEYL-------------LDGITGLSGSGPA 290 (303)
Q Consensus 257 ~e~V~~Lfs~iG~~v~vdE~~-------------~Da~tAlsGsgPA 290 (303)
.+.+.++|+..|..++++++. ++.++++.+|..+
T Consensus 159 ~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G 205 (312)
T 3hn2_A 159 IEELAAMFRQAGVDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVN 205 (312)
T ss_dssp HHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHhCCCCcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHH
Confidence 789999999999998888887 7888999887654
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-14 Score=132.54 Aligned_cols=110 Identities=12% Similarity=0.198 Sum_probs=88.1
Q ss_pred CeEecChHHhhcCCCEEEEeeCCcc--HHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVKPHI--VPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQ 241 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVpP~~--v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~ 241 (303)
+..+.+..+++++||+||+|||.+. ..+++.++.++++++++|+|.++++++..+.+.+.....+++.||+.|.....
T Consensus 88 i~~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~~~~~~~~~~g~h~~~P~~~~~ 167 (302)
T 1f0y_A 88 IATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMK 167 (302)
T ss_dssp EEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCC
T ss_pred eEEecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCCcccEEEEecCCCcccCc
Confidence 4556777778999999999998754 46788889888888999999999999999988775334689999988865544
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEcC
Q psy6714 242 GASVFVRGSSASDQDAQTVINLFKSVGTC-EEVP 274 (303)
Q Consensus 242 G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~vd 274 (303)
.+ .++.+...+++..+.+.++|+.+|.. +.+.
T Consensus 168 ~~-~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~ 200 (302)
T 1f0y_A 168 LV-EVIKTPMTSQKTFESLVDFSKALGKHPVSCK 200 (302)
T ss_dssp EE-EEECCTTCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred eE-EEeCCCCCCHHHHHHHHHHHHHcCCceEEec
Confidence 43 45677778999999999999999975 4443
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.55 E-value=5e-14 Score=134.93 Aligned_cols=144 Identities=15% Similarity=0.123 Sum_probs=110.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCC--------------CeEecChHHhhcCCCEEEEee
Q psy6714 132 RSDKQIAGTTERGPGALIASLN----------IVSK---ATGTMG--------------AKITFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~G--------------v~v~~d~~eav~~ADIVILAV 184 (303)
+|||+|||+|.||+ .++..+. +..+ .+.+.| +..+.|+.++++++|+||+||
T Consensus 29 ~mkI~VIGaG~mG~-alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaV 107 (356)
T 3k96_A 29 KHPIAILGAGSWGT-ALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVV 107 (356)
T ss_dssp CSCEEEECCSHHHH-HHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECC
T ss_pred CCeEEEECccHHHH-HHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECC
Confidence 58999999999999 4655431 2222 222222 355678888999999999999
Q ss_pred CCccHHHHHHhhccccCCCCEEEEecCCCcHH------HHHhhCCCCCceEEEecCcHHhhhCCc-EEEEeCCCCCHHHH
Q psy6714 185 KPHIVPVALNDIKPVFNESNLLISVAGGVPIK------NMEQALPKNSRIIRAMPNTPALVRQGA-SVFVRGSSASDQDA 257 (303)
Q Consensus 185 pP~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie------~L~~~l~~~~~VVr~mPn~p~~v~~G~-til~~g~~~~~e~~ 257 (303)
|++.++++++++.++++++++|||+++|+..+ .+++.++.....+...|+++.++..+. +.++.+ ..+++..
T Consensus 108 p~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~~~~vlsgP~~a~ev~~g~pt~~via-~~~~~~~ 186 (356)
T 3k96_A 108 PSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLA-SNNSQFS 186 (356)
T ss_dssp CHHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCSCCEEEEESSCCHHHHHTTCCEEEEEE-ESCHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCCCCEEEEECccHHHHHHcCCCeEEEEe-cCCHHHH
Confidence 99999999999999998999999999999874 577777743345788899998887775 333332 2378888
Q ss_pred HHHHHHHHhcCCcEEcCCCC
Q psy6714 258 QTVINLFKSVGTCEEVPEYL 277 (303)
Q Consensus 258 e~V~~Lfs~iG~~v~vdE~~ 277 (303)
+.++++|+..|..++++++.
T Consensus 187 ~~v~~lf~~~~~rv~~~~Di 206 (356)
T 3k96_A 187 KDLIERLHGQRFRVYKNDDM 206 (356)
T ss_dssp HHHHHHHCCSSEEEEEESCH
T ss_pred HHHHHHhCCCCeeEEEeCCH
Confidence 99999999999888776654
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-15 Score=133.67 Aligned_cols=134 Identities=22% Similarity=0.303 Sum_probs=99.3
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH----------hhcHH--HHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhc
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL----------NIVSK--ATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al----------~r~~e--~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~ 197 (303)
...|||+|||+|.||.. ++..+ ++..+ .+.+.|+... ++.++++++|+||+|||++++++++ ++.
T Consensus 17 ~~~~~I~iIG~G~mG~~-la~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~-~~~~~~~~aDvVilav~~~~~~~v~-~l~ 93 (201)
T 2yjz_A 17 EKQGVVCIFGTGDFGKS-LGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVL-CYSEAASRSDVIVLAVHREHYDFLA-ELA 93 (201)
Confidence 45789999999999994 44332 22221 2233466554 7778888999999999999998887 565
Q ss_pred cccCCCCEEEEecCCCc--------HHHHHhhCCCCCceEEEecCcHHhhhC-Cc-----EEEEeCCCCCHHHHHHHHHH
Q psy6714 198 PVFNESNLLISVAGGVP--------IKNMEQALPKNSRIIRAMPNTPALVRQ-GA-----SVFVRGSSASDQDAQTVINL 263 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV~--------ie~L~~~l~~~~~VVr~mPn~p~~v~~-G~-----til~~g~~~~~e~~e~V~~L 263 (303)
+. .++++||++++|++ .+.|++.++. .++++.|||+++.... |. +.++.+. ++++++.+++|
T Consensus 94 ~~-~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~-~~vvra~~n~~a~~~~~g~l~g~~~~~~~g~--~~~~~~~v~~l 169 (201)
T 2yjz_A 94 DS-LKGRVLIDVSNNQKMNQYPESNAEYLAQLVPG-AHVVKAFNTISAWALQSGTLDASRQVFVCGN--DSKAKDRVMDI 169 (201)
Confidence 43 36789999999996 3677777774 5899999999987765 44 1334343 57788999999
Q ss_pred HHhcCCc
Q psy6714 264 FKSVGTC 270 (303)
Q Consensus 264 fs~iG~~ 270 (303)
|+.+|..
T Consensus 170 l~~~G~~ 176 (201)
T 2yjz_A 170 ARTLGLT 176 (201)
Confidence 9999974
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-13 Score=125.16 Aligned_cols=145 Identities=17% Similarity=0.169 Sum_probs=103.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH---H
Q psy6714 132 RSDKQIAGTTERGPGALIASLN----------IVSK---ATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL---N 194 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL---~ 194 (303)
+|||+|||+|.||.. ++..+. +..+ .+.+.|+....+..++++++|+||+||| +.+++.++ +
T Consensus 5 ~m~i~iiG~G~~G~~-~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~ 83 (299)
T 1vpd_A 5 TMKVGFIGLGIMGKP-MSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGEN 83 (299)
T ss_dssp -CEEEEECCSTTHHH-HHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTT
T ss_pred cceEEEECchHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcc
Confidence 479999999999994 554421 2222 3445688888888888999999999999 77889998 6
Q ss_pred hhccccCCCCEEEEecCCCc--HHHHHhhCCC-CCceEEE--ecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCC
Q psy6714 195 DIKPVFNESNLLISVAGGVP--IKNMEQALPK-NSRIIRA--MPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGT 269 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV~--ie~L~~~l~~-~~~VVr~--mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~ 269 (303)
++.+.++++++||++.++.. .+.|.+.++. +..++.. +++.+.....+.++++.+ +++..+.++++|+.+|.
T Consensus 84 ~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ll~~~g~ 160 (299)
T 1vpd_A 84 GIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGG---DKAIFDKYYDLMKAMAG 160 (299)
T ss_dssp CHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEES---CHHHHHHHHHHHHTTEE
T ss_pred hHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEeCC---CHHHHHHHHHHHHHHcC
Confidence 78777888999999988764 3567666643 2344433 344444555556666665 68889999999999997
Q ss_pred cE-EcCCCCchh
Q psy6714 270 CE-EVPEYLLDG 280 (303)
Q Consensus 270 ~v-~vdE~~~Da 280 (303)
.+ .+++.....
T Consensus 161 ~~~~~~~~~~~~ 172 (299)
T 1vpd_A 161 SVVHTGDIGAGN 172 (299)
T ss_dssp EEEEEESTTHHH
T ss_pred CeEEeCCcCHHH
Confidence 54 445543333
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.1e-13 Score=128.88 Aligned_cols=112 Identities=13% Similarity=-0.003 Sum_probs=86.4
Q ss_pred CeEecChHHhhcCCCEEEEeeCCccHHHHHHhhcc----ccCCCCEEEEecCCCcH---------HHHHhhCCCCCceEE
Q psy6714 164 AKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKP----VFNESNLLISVAGGVPI---------KNMEQALPKNSRIIR 230 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~----~L~~g~IVVSiaaGV~i---------e~L~~~l~~~~~VVr 230 (303)
+..+.++.++++++|+||+|||++.+.+++.++.+ .++++++|||+++|+.. +.+.+.++ ....++
T Consensus 91 i~~~~~~~ea~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~-~~~~v~ 169 (375)
T 1yj8_A 91 IVAHSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLN-IPCSAL 169 (375)
T ss_dssp EEEESSTHHHHTTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSS-SCEEEE
T ss_pred eEEECCHHHHHcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcC-CCEEEE
Confidence 45667788888999999999999999999999998 88889999999999865 22344454 234678
Q ss_pred EecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEcCCC
Q psy6714 231 AMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEY 276 (303)
Q Consensus 231 ~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~vdE~ 276 (303)
.+|+++..+..|...++.....+++..+.++++|+..|..+++.++
T Consensus 170 ~gp~~a~~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~d 215 (375)
T 1yj8_A 170 SGANIAMDVAMENFSEATIGGNDKDSLVIWQRVFDLPYFKINCVNE 215 (375)
T ss_dssp ECSCCHHHHHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEESC
T ss_pred eCCchHHHHHhCCCeEEEEecCCHHHHHHHHHHhCCCCeEEEEeCC
Confidence 8999998887775432222234678889999999999987666554
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.2e-14 Score=126.60 Aligned_cols=155 Identities=12% Similarity=0.186 Sum_probs=108.2
Q ss_pred CcEEEEcCChhhHHHHHHHHhh----------cHHH---HhhC---CC----eEecChHHhhcCCCEEEEeeCCccHHHH
Q psy6714 133 SDKQIAGTTERGPGALIASLNI----------VSKA---TGTM---GA----KITFDNKEVTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~r----------~~e~---l~e~---Gv----~v~~d~~eav~~ADIVILAVpP~~v~~V 192 (303)
|||+|||+|.||. .++..+.+ ..++ +... |. .+..+..++++++|+||+|||++.+.++
T Consensus 1 m~i~iiG~G~~G~-~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~~~~~v 79 (291)
T 1ks9_A 1 MKITVLGCGALGQ-LWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDA 79 (291)
T ss_dssp CEEEEECCSHHHH-HHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGHHHH
T ss_pred CeEEEECcCHHHH-HHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHHhHHHH
Confidence 7899999999999 45554321 1111 1111 21 1223445678899999999999999999
Q ss_pred HHhhccccCCCCEEEEecCCCcH-HHHHhhCCC---C---CceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHH
Q psy6714 193 LNDIKPVFNESNLLISVAGGVPI-KNMEQALPK---N---SRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFK 265 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSiaaGV~i-e~L~~~l~~---~---~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs 265 (303)
++++.++++++++||++.+|+.. +.+.+.++. + ....+.+| .+...+.|.+.+.... .+++..+.+.++|+
T Consensus 80 ~~~l~~~l~~~~~vv~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~p-~~~~~~~g~~~i~~~~-~~~~~~~~~~~ll~ 157 (291)
T 1ks9_A 80 VKSLASTLPVTTPILLIHNGMGTIEELQNIQQPLLMGTTTHAARRDGN-VIIHVANGITHIGPAR-QQDGDYSYLADILQ 157 (291)
T ss_dssp HHHHHTTSCTTSCEEEECSSSCTTGGGTTCCSCEEEEEECCEEEEETT-EEEEEECCCEEEEESS-GGGTTCTHHHHHHH
T ss_pred HHHHHhhCCCCCEEEEecCCCCcHHHHHHhcCCeEEEEEeEccEEcCC-EEEEecccceEEccCC-CCcchHHHHHHHHH
Confidence 99999989889999999999976 466666653 0 01124455 4444556665554422 24556788999999
Q ss_pred hcCCcEEcCCC-------------CchhhhhhccchHH
Q psy6714 266 SVGTCEEVPEY-------------LLDGITGLSGSGPA 290 (303)
Q Consensus 266 ~iG~~v~vdE~-------------~~Da~tAlsGsgPA 290 (303)
.+|..+++.++ .+|.++|+++|+.+
T Consensus 158 ~~g~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g 195 (291)
T 1ks9_A 158 TVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNG 195 (291)
T ss_dssp TTSSCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred hcCCCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCch
Confidence 99998888777 68999999988644
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=128.72 Aligned_cols=137 Identities=12% Similarity=0.127 Sum_probs=99.8
Q ss_pred CCCcEEEEcCChhhHHHHHHHH----------hhcHH---HHhhCC-----------CeEecChHHhhcCCCEEEEeeCC
Q psy6714 131 NRSDKQIAGTTERGPGALIASL----------NIVSK---ATGTMG-----------AKITFDNKEVTLNSEVIILAVKP 186 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e~G-----------v~v~~d~~eav~~ADIVILAVpP 186 (303)
+.|||+|||+|.||+. ++..+ ++..+ .+.+.| +.++.++.+ ++++|+||+|||+
T Consensus 13 ~~~kI~iIG~G~mG~a-la~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~ 90 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTV-FAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPV 90 (335)
T ss_dssp -CCEEEEECCSHHHHH-HHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCG
T ss_pred cCCcEEEECcCHHHHH-HHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCH
Confidence 4589999999999995 44432 22222 233434 567778888 8899999999999
Q ss_pred ccHHHHHHhhccccCCCCEEEEecCCCcHHH-------HHhhCCCCCceEEEecCcHHhhhCCc-EEEEeCCCCCHHHHH
Q psy6714 187 HIVPVALNDIKPVFNESNLLISVAGGVPIKN-------MEQALPKNSRIIRAMPNTPALVRQGA-SVFVRGSSASDQDAQ 258 (303)
Q Consensus 187 ~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~-------L~~~l~~~~~VVr~mPn~p~~v~~G~-til~~g~~~~~e~~e 258 (303)
+++++++.++.+ ++++|||+++|+..+. +.+.++ ....++.+|+++..++.|. +.++.+.. + .+
T Consensus 91 ~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~-~~~~~~~~P~~~~~~~~g~~~~~~~g~~-~---~~ 162 (335)
T 1z82_A 91 QYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILG-CPYAVLSGPSHAEEVAKKLPTAVTLAGE-N---SK 162 (335)
T ss_dssp GGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTC-CCEEEEESSCCHHHHHTTCCEEEEEEET-T---HH
T ss_pred HHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcC-CceEEEECCccHHHHhCCCceEEEEEeh-h---HH
Confidence 999999998876 6889999999987532 223444 2357889999998888775 44444422 2 67
Q ss_pred HHHHHHHhcCCcEEcCCCC
Q psy6714 259 TVINLFKSVGTCEEVPEYL 277 (303)
Q Consensus 259 ~V~~Lfs~iG~~v~vdE~~ 277 (303)
.+.++|+..|..+++.++.
T Consensus 163 ~~~~ll~~~g~~~~~~~di 181 (335)
T 1z82_A 163 ELQKRISTEYFRVYTCEDV 181 (335)
T ss_dssp HHHHHHCCSSEEEEEESCH
T ss_pred HHHHHhCCCCEEEEecCch
Confidence 8999999999887776654
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.8e-14 Score=129.12 Aligned_cols=144 Identities=15% Similarity=0.201 Sum_probs=98.1
Q ss_pred CcEEEEcCChhhHHHHHHHH----------hhcHH---HHhhCCCeEecChHHhhcCCCEEEEee-CCccHHHHHHhh--
Q psy6714 133 SDKQIAGTTERGPGALIASL----------NIVSK---ATGTMGAKITFDNKEVTLNSEVIILAV-KPHIVPVALNDI-- 196 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAV-pP~~v~~VL~eI-- 196 (303)
|||+|||+|.||.. ++..+ ++..+ .+.+.|+.+..++.++++++|+||+|| ++++++.++.++
T Consensus 1 m~i~iiG~G~mG~~-~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~ 79 (296)
T 2gf2_A 1 MPVGFIGLGNMGNP-MAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANG 79 (296)
T ss_dssp CCEEEECCSTTHHH-HHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTS
T ss_pred CeEEEEeccHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchh
Confidence 68999999999994 55442 12222 345668888888888899999999999 577899998764
Q ss_pred -ccccCCCCEEEEecCCCcHHHHHh---hCCCCCceEEEecCcHHhhh-----CCcEEEEeCCCCCHHHHHHHHHHHHhc
Q psy6714 197 -KPVFNESNLLISVAGGVPIKNMEQ---ALPKNSRIIRAMPNTPALVR-----QGASVFVRGSSASDQDAQTVINLFKSV 267 (303)
Q Consensus 197 -~~~L~~g~IVVSiaaGV~ie~L~~---~l~~~~~VVr~mPn~p~~v~-----~G~til~~g~~~~~e~~e~V~~Lfs~i 267 (303)
.+.++++++||+ +++++.+.+++ .++.. .+.+++.|...+ .+...++.+ .+++..+.++++|+.+
T Consensus 80 ~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~---g~~~~~~p~~~g~~~a~~~~~~~~~~--~~~~~~~~v~~l~~~~ 153 (296)
T 2gf2_A 80 ILKKVKKGSLLID-SSTIDPAVSKELAKEVEKM---GAVFMDAPVSGGVGAARSGNLTFMVG--GVEDEFAAAQELLGCM 153 (296)
T ss_dssp GGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHT---TCEEEECCEESHHHHHHHTCEEEEEE--SCGGGHHHHHHHHTTT
T ss_pred HHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc---CCEEEEcCCCCChhHHhcCcEEEEeC--CCHHHHHHHHHHHHHH
Confidence 345678899999 88998765543 23311 122344443332 454444443 2677889999999999
Q ss_pred CCcEEcCCCCchhhhhhccchHHH
Q psy6714 268 GTCEEVPEYLLDGITGLSGSGPAY 291 (303)
Q Consensus 268 G~~v~vdE~~~Da~tAlsGsgPAf 291 (303)
|..++. ++..|++++|
T Consensus 154 g~~~~~--------~~~~g~~~~~ 169 (296)
T 2gf2_A 154 GSNVVY--------CGAVGTGQAA 169 (296)
T ss_dssp EEEEEE--------EESTTHHHHH
T ss_pred cCCeEE--------eCCccHHHHH
Confidence 986433 2235677776
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=6.9e-13 Score=124.52 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=87.0
Q ss_pred CeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCCCcH---------HHHHhhCCCCCceEEEecC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPI---------KNMEQALPKNSRIIRAMPN 234 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~i---------e~L~~~l~~~~~VVr~mPn 234 (303)
+..+.++.++++++|+||+|||++.+.++++++.++++++++|||+++|+.. +.+.+.++ ....++.+|+
T Consensus 78 ~~~~~~~~~~~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~-~~~~v~~gp~ 156 (354)
T 1x0v_A 78 VVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLG-IPMSVLMGAN 156 (354)
T ss_dssp EEEESSHHHHHTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHT-CCEEEEECSC
T ss_pred eEEEcCHHHHHcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcC-CCEEEEECCC
Confidence 4455677788899999999999999999999999989889999999998863 23444454 2356789999
Q ss_pred cHHhhhCCc-EEEEeCCCCCHHHHHHHHHHHHhcCCcEEcCCC
Q psy6714 235 TPALVRQGA-SVFVRGSSASDQDAQTVINLFKSVGTCEEVPEY 276 (303)
Q Consensus 235 ~p~~v~~G~-til~~g~~~~~e~~e~V~~Lfs~iG~~v~vdE~ 276 (303)
++..+..|. +.++.+ ..+++..+.++++|+..|..+++.++
T Consensus 157 ~a~~v~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~~~~~~d 198 (354)
T 1x0v_A 157 IASEVADEKFCETTIG-CKDPAQGQLLKELMQTPNFRITVVQE 198 (354)
T ss_dssp CHHHHHTTCCEEEEEE-CSSHHHHHHHHHHHCBTTEEEEEESC
T ss_pred cHHHHHhcCCceEEEE-ECCHHHHHHHHHHhCCCCEEEEEcCC
Confidence 998887775 344443 34678889999999999987776654
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-12 Score=120.48 Aligned_cols=113 Identities=8% Similarity=0.098 Sum_probs=92.1
Q ss_pred CeEecChHHhhcCCCEEEEeeCCc--cHHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVKPH--IVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQ 241 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVpP~--~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~ 241 (303)
+..+.+..+++++||+||+|||++ ...+++.++.++++++++|+|..+++++..+.+.+....+++..||..|.....
T Consensus 73 i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~~~~~~~~~ig~h~~~p~~~~~ 152 (283)
T 4e12_A 73 IRYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDKFLALHFANHVWVNN 152 (283)
T ss_dssp CEEESCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHHHHSCGGGEEEEEECSSTTTSC
T ss_pred eEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEccCCCcccCc
Confidence 466778888899999999999987 778888999888889999999999999998888776445789999887755444
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEcCCCC
Q psy6714 242 GASVFVRGSSASDQDAQTVINLFKSVGTC-EEVPEYL 277 (303)
Q Consensus 242 G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~vdE~~ 277 (303)
. ..++++...+++.++.++++++.+|+. +.+..+.
T Consensus 153 l-vevv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~ 188 (283)
T 4e12_A 153 T-AEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEK 188 (283)
T ss_dssp E-EEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCC
T ss_pred e-EEEEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 3 356777788999999999999999985 5564333
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.6e-13 Score=125.23 Aligned_cols=158 Identities=14% Similarity=0.148 Sum_probs=109.5
Q ss_pred CCcEEEEcCChhhHHHHHHHH-----------hhc--HH---HHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHh
Q psy6714 132 RSDKQIAGTTERGPGALIASL-----------NIV--SK---ATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-----------~r~--~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~e 195 (303)
+|||||||+|.||.+ ++..+ +++ .+ .+.+.|+....++.+++++||+||+|||+....+++.+
T Consensus 24 ~~~I~iIG~G~mG~~-~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~~~~ 102 (312)
T 3qsg_A 24 AMKLGFIGFGEAASA-IASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALEVAQQ 102 (312)
T ss_dssp -CEEEEECCSHHHHH-HHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTHHHHHHH
T ss_pred CCEEEEECccHHHHH-HHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhHHHHHHh
Confidence 689999999999995 44332 222 12 34567998888999999999999999999999999999
Q ss_pred hccccCCCCEEEEecCCCcHH---HHHhhCCC---CCceEEE--ecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhc
Q psy6714 196 IKPVFNESNLLISVAGGVPIK---NMEQALPK---NSRIIRA--MPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSV 267 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~ie---~L~~~l~~---~~~VVr~--mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~i 267 (303)
+.+.++++++||++. ++... .+.+.+.. +..++.. +...+.. ....++++.++. + +.++++|+.+
T Consensus 103 l~~~l~~~~ivvd~s-t~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~~-~g~l~i~vgg~~---~--~~~~~ll~~~ 175 (312)
T 3qsg_A 103 AGPHLCEGALYADFT-SCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPH-GHRVPLVVDGDG---A--RRFQAAFTLY 175 (312)
T ss_dssp HGGGCCTTCEEEECC-CCCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTTT-GGGSEEEEESTT---H--HHHHHHHHTT
T ss_pred hHhhcCCCCEEEEcC-CCCHHHHHHHHHHHHhhcCCCeEEeccccCCchhh-cCCEEEEecCCh---H--HHHHHHHHHh
Confidence 999998999988654 34432 23332221 2333322 2222322 334667777642 2 8899999999
Q ss_pred CCcEEcCCCCchhhhhhccchHHHHHHHHH
Q psy6714 268 GTCEEVPEYLLDGITGLSGSGPAYRYEVTS 297 (303)
Q Consensus 268 G~~v~vdE~~~Da~tAlsGsgPAf~~~~ie 297 (303)
|..+++-.+......++-.|.++|++..+.
T Consensus 176 g~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~ 205 (312)
T 3qsg_A 176 GCRIEVLDGEVGGAALLKMCRSAVLKGLEA 205 (312)
T ss_dssp TCEEEECCSSTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 987655444578888888999999854443
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=8.8e-14 Score=131.75 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=101.5
Q ss_pred cEEEEcCChhhHHHHHHHH----------hhcHH---HHhhC--------------CCeEecChHHhhcCCCEEEEeeCC
Q psy6714 134 DKQIAGTTERGPGALIASL----------NIVSK---ATGTM--------------GAKITFDNKEVTLNSEVIILAVKP 186 (303)
Q Consensus 134 kIgIIGlG~MG~~~La~al----------~r~~e---~l~e~--------------Gv~v~~d~~eav~~ADIVILAVpP 186 (303)
||+|||+|.||.+ ++..+ ++..+ .+.+. ++.++.++.++++++|+||+|||+
T Consensus 17 kI~iIG~G~mG~~-la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~ 95 (366)
T 1evy_A 17 KAVVFGSGAFGTA-LAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT 95 (366)
T ss_dssp EEEEECCSHHHHH-HHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH
T ss_pred eEEEECCCHHHHH-HHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh
Confidence 9999999999994 55443 12222 23222 345667788888999999999999
Q ss_pred ccHHHHHHh----hccccCC-CCEEEEecCCCcHH-------HHHhhCCCCCceEEEecCcHHhhhCCcE-EEEeCCCCC
Q psy6714 187 HIVPVALND----IKPVFNE-SNLLISVAGGVPIK-------NMEQALPKNSRIIRAMPNTPALVRQGAS-VFVRGSSAS 253 (303)
Q Consensus 187 ~~v~~VL~e----I~~~L~~-g~IVVSiaaGV~ie-------~L~~~l~~~~~VVr~mPn~p~~v~~G~t-il~~g~~~~ 253 (303)
+++.+++.+ +.+++++ +++||++++|+..+ .+.+.++.....++.+|+++..+..|.. .++.+ ..+
T Consensus 96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~~~g~~~~~~~~-~~~ 174 (366)
T 1evy_A 96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSIA-SAD 174 (366)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCEEEEEE-CSS
T ss_pred HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHHHhCCceEEEEe-cCC
Confidence 999999998 9888877 88999999888763 2333343212357888999987777753 33333 346
Q ss_pred HHHHHHHHHHHHhc--CCcEEcCCC
Q psy6714 254 DQDAQTVINLFKSV--GTCEEVPEY 276 (303)
Q Consensus 254 ~e~~e~V~~Lfs~i--G~~v~vdE~ 276 (303)
++..+.++.+|+.+ |..+++.++
T Consensus 175 ~~~~~~v~~ll~~~g~g~~~~~~~d 199 (366)
T 1evy_A 175 INVARRLQRIMSTGDRSFVCWATTD 199 (366)
T ss_dssp HHHHHHHHHHHSCTTSSEEEEEESC
T ss_pred HHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 78889999999999 766655443
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-13 Score=124.07 Aligned_cols=141 Identities=18% Similarity=0.202 Sum_probs=103.5
Q ss_pred CcEEEEcCChhhHHHHHHHH----------hh--cHHH---HhhCCC-----------eEec--ChHHhhcCCCEEEEee
Q psy6714 133 SDKQIAGTTERGPGALIASL----------NI--VSKA---TGTMGA-----------KITF--DNKEVTLNSEVIILAV 184 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al----------~r--~~e~---l~e~Gv-----------~v~~--d~~eav~~ADIVILAV 184 (303)
|||+|||+|.||.. ++..+ ++ ..++ +.+.|. .+.. ++.++++++|+||+||
T Consensus 1 m~I~iiG~G~mG~~-~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v 79 (335)
T 1txg_A 1 MIVSILGAGAMGSA-LSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGV 79 (335)
T ss_dssp CEEEEESCCHHHHH-HHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECS
T ss_pred CEEEEECcCHHHHH-HHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcC
Confidence 78999999999994 55432 23 3332 334442 4445 6677889999999999
Q ss_pred CCccHHHHHHhhccccCCCCEEEEecCCC------cHHHHHhhCCCC-----CceEEEecCcHHhhhCCc-EEEEeCCCC
Q psy6714 185 KPHIVPVALNDIKPVFNESNLLISVAGGV------PIKNMEQALPKN-----SRIIRAMPNTPALVRQGA-SVFVRGSSA 252 (303)
Q Consensus 185 pP~~v~~VL~eI~~~L~~g~IVVSiaaGV------~ie~L~~~l~~~-----~~VVr~mPn~p~~v~~G~-til~~g~~~ 252 (303)
|++.+.+++.++.+ ++++++||++++|+ ..+.+.+.++.. ...++.+|+.+..+..|. +.++.+. .
T Consensus 80 ~~~~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~g~~~~~~~~~-~ 157 (335)
T 1txg_A 80 STDGVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSS-P 157 (335)
T ss_dssp CGGGHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEEEC-S
T ss_pred ChHHHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHHHHccCCcEEEEEe-C
Confidence 99999999999999 88899999999898 445666665431 135678899988777665 3444433 3
Q ss_pred CHHHHHHHHHHHHhcCCcEEcCCC
Q psy6714 253 SDQDAQTVINLFKSVGTCEEVPEY 276 (303)
Q Consensus 253 ~~e~~e~V~~Lfs~iG~~v~vdE~ 276 (303)
+++..+.+.++|+..|..+++.++
T Consensus 158 ~~~~~~~~~~ll~~~g~~~~~~~d 181 (335)
T 1txg_A 158 SESSANKMKEIFETEYFGVEVTTD 181 (335)
T ss_dssp CHHHHHHHHHHHCBTTEEEEEESC
T ss_pred CHHHHHHHHHHhCCCcEEEEecCc
Confidence 678889999999999987666544
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-13 Score=120.74 Aligned_cols=135 Identities=16% Similarity=0.270 Sum_probs=96.2
Q ss_pred ccCCCcEEEEcCChhhHHHHHHHHhhcHHHHhhCCCe--EecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEE
Q psy6714 129 RWNRSDKQIAGTTERGPGALIASLNIVSKATGTMGAK--ITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLL 206 (303)
Q Consensus 129 ~~~~mkIgIIGlG~MG~~~La~al~r~~e~l~e~Gv~--v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IV 206 (303)
...+|||+|||+|.||. .++..+ .+.|.. ...-..+++++||+||+|||++.+.++++++.+.++ +++|
T Consensus 16 ~~~~~~I~iiG~G~mG~-~la~~l-------~~~g~~V~~~~~~~~~~~~aD~vi~av~~~~~~~v~~~l~~~~~-~~~v 86 (209)
T 2raf_A 16 YFQGMEITIFGKGNMGQ-AIGHNF-------EIAGHEVTYYGSKDQATTLGEIVIMAVPYPALAALAKQYATQLK-GKIV 86 (209)
T ss_dssp ----CEEEEECCSHHHH-HHHHHH-------HHTTCEEEEECTTCCCSSCCSEEEECSCHHHHHHHHHHTHHHHT-TSEE
T ss_pred ccCCCEEEEECCCHHHH-HHHHHH-------HHCCCEEEEEcCCHHHhccCCEEEEcCCcHHHHHHHHHHHHhcC-CCEE
Confidence 35678999999999999 465443 233433 222223367899999999999999999999988887 8999
Q ss_pred EEecCCCc---------------HHHHHhhCCCCCceEEE-----ecCcHHhhhCC---cEEEEeCCCCCHHHHHHHHHH
Q psy6714 207 ISVAGGVP---------------IKNMEQALPKNSRIIRA-----MPNTPALVRQG---ASVFVRGSSASDQDAQTVINL 263 (303)
Q Consensus 207 VSiaaGV~---------------ie~L~~~l~~~~~VVr~-----mPn~p~~v~~G---~til~~g~~~~~e~~e~V~~L 263 (303)
|++++|++ .+.+++.++ +.++++. +|+.+.....+ ..+++.++ +++..+.++++
T Consensus 87 i~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~p~~~~~~~~g~~~~~~~~~g~--~~~~~~~v~~l 163 (209)
T 2raf_A 87 VDITNPLNFDTWDDLVVPADSSAAQELQQQLP-DSQVLKAFNTTFAATLQSGQVNGKEPTTVLVAGN--DDSAKQRFTRA 163 (209)
T ss_dssp EECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT-TSEEEECSTTSCHHHHHHSEETTTEECEEEEEES--CHHHHHHHHHH
T ss_pred EEECCCCCccccccccCCCCCcHHHHHHHHCC-CCcEEEeeecccHhhccccccCCCCCceeEEcCC--CHHHHHHHHHH
Confidence 99999886 577888887 3678885 56666544444 23334432 67889999999
Q ss_pred HHhcCC-cEEcCC
Q psy6714 264 FKSVGT-CEEVPE 275 (303)
Q Consensus 264 fs~iG~-~v~vdE 275 (303)
|+.+|. ++++++
T Consensus 164 l~~~G~~~~~~~~ 176 (209)
T 2raf_A 164 LADSPLEVKDAGK 176 (209)
T ss_dssp TTTSSCEEEEEES
T ss_pred HHHcCCceEeCCC
Confidence 999996 455554
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.2e-13 Score=126.48 Aligned_cols=141 Identities=13% Similarity=0.197 Sum_probs=96.8
Q ss_pred CCCcEEEEcCChhhHHHHHHH---------HhhcHH---HHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHHHh--
Q psy6714 131 NRSDKQIAGTTERGPGALIAS---------LNIVSK---ATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVALND-- 195 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~a---------l~r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL~e-- 195 (303)
.|+||||||||.||.+|.... ++++.+ .+.+.|+....++.|+++.||+||+||+ +.++++|+..
T Consensus 2 ~M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~ 81 (300)
T 3obb_A 2 HMKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDD 81 (300)
T ss_dssp -CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSS
T ss_pred CcCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchh
Confidence 477999999999999764433 234443 4567899999999999999999999997 6778888854
Q ss_pred -hccccCCCCEEEEecCCCcH---HHHHhhCCC-CCceEEE-ecCcHHhhhCC-cEEEEeCCCCCHHHHHHHHHHHHhcC
Q psy6714 196 -IKPVFNESNLLISVAGGVPI---KNMEQALPK-NSRIIRA-MPNTPALVRQG-ASVFVRGSSASDQDAQTVINLFKSVG 268 (303)
Q Consensus 196 -I~~~L~~g~IVVSiaaGV~i---e~L~~~l~~-~~~VVr~-mPn~p~~v~~G-~til~~g~~~~~e~~e~V~~Lfs~iG 268 (303)
+.+.+.++++||.+.. ++. ..+.+.+.. +..++.+ +-..+.....| .++++.| +++.++.++.+|+.+|
T Consensus 82 g~~~~~~~g~iiId~sT-~~p~~~~~~a~~~~~~G~~~lDaPVsGg~~~A~~G~L~imvGG---~~~~~~~~~p~l~~~g 157 (300)
T 3obb_A 82 GLLAHIAPGTLVLECST-IAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGG---DAEALEKARPLFEAMG 157 (300)
T ss_dssp SSTTSCCC-CEEEECSC-CCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHHTCEEEEEES---CHHHHHHHHHHHHHHE
T ss_pred hhhhcCCCCCEEEECCC-CCHHHHHHHHHHHHHcCCEEEecCCCCCHHHHHhCCEEEEEeC---CHHHHHHHHHHHHHhC
Confidence 5666778999995543 443 345554432 2333332 11222223344 5677777 7899999999999999
Q ss_pred Cc-EEcCC
Q psy6714 269 TC-EEVPE 275 (303)
Q Consensus 269 ~~-v~vdE 275 (303)
.. +++-+
T Consensus 158 ~~i~~~G~ 165 (300)
T 3obb_A 158 RNIFHAGP 165 (300)
T ss_dssp EEEEEEES
T ss_pred CCEEEeCC
Confidence 74 55543
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=122.59 Aligned_cols=159 Identities=13% Similarity=0.186 Sum_probs=107.9
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh----------c-HHHHhhCCCe---------------EecChHHhhcCCCEEEEee
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI----------V-SKATGTMGAK---------------ITFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r----------~-~e~l~e~Gv~---------------v~~d~~eav~~ADIVILAV 184 (303)
|+|||+|||+|.||+ .++..+.+ . .+.+++.|+. ++.+..++.+++|+||+||
T Consensus 1 M~mkI~IiGaGaiG~-~~a~~L~~~g~~V~~~~r~~~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilav 79 (320)
T 3i83_A 1 MSLNILVIGTGAIGS-FYGALLAKTGHCVSVVSRSDYETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCI 79 (320)
T ss_dssp --CEEEEESCCHHHH-HHHHHHHHTTCEEEEECSTTHHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECC
T ss_pred CCCEEEEECcCHHHH-HHHHHHHhCCCeEEEEeCChHHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEec
Confidence 358999999999999 56654321 1 1334444432 2345556656899999999
Q ss_pred CCccHHHHHHhhccccCCCCEEEEecCCCc-HHHHHhhCCCCCceEEEecCcH------HhhhC-CcEEEEeC--CCCCH
Q psy6714 185 KPHIVPVALNDIKPVFNESNLLISVAGGVP-IKNMEQALPKNSRIIRAMPNTP------ALVRQ-GASVFVRG--SSASD 254 (303)
Q Consensus 185 pP~~v~~VL~eI~~~L~~g~IVVSiaaGV~-ie~L~~~l~~~~~VVr~mPn~p------~~v~~-G~til~~g--~~~~~ 254 (303)
|++++.++++++++++.++++||++++|+. .+.+.+.++. ..++....... ..+.. +...+..+ +..+.
T Consensus 80 K~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~-~~vl~g~~~~~a~~~~pg~v~~~~~~~~~ig~~~~~~~ 158 (320)
T 3i83_A 80 KVVEGADRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPD-NEVISGLAFIGVTRTAPGEIWHQAYGRLMLGNYPGGVS 158 (320)
T ss_dssp CCCTTCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTT-SCEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCCC
T ss_pred CCCChHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCC-CcEEEEEEEeceEEcCCCEEEECCCCEEEEecCCCCcc
Confidence 999999999999999988999999999997 4788898885 35655543332 12211 22223332 23345
Q ss_pred HHHHHHHHHHHhcCCcEEcCCCC-------------chhhhhhccchHHH
Q psy6714 255 QDAQTVINLFKSVGTCEEVPEYL-------------LDGITGLSGSGPAY 291 (303)
Q Consensus 255 e~~e~V~~Lfs~iG~~v~vdE~~-------------~Da~tAlsGsgPAf 291 (303)
+..+.+.++|+..|..++++++. ++.++++.+|.-+-
T Consensus 159 ~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~ 208 (320)
T 3i83_A 159 ERVKTLAAAFEEAGIDGIATENITTARWQKCVWNAAFNPLSVLSGGLDTL 208 (320)
T ss_dssp HHHHHHHHHHHHTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHH
T ss_pred HHHHHHHHHHHhCCCCceECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHH
Confidence 67789999999999887776554 34567777764433
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-13 Score=122.97 Aligned_cols=159 Identities=12% Similarity=0.106 Sum_probs=107.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHh---------hcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHHHhhcc
Q psy6714 132 RSDKQIAGTTERGPGALIASLN---------IVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVALNDIKP 198 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~---------r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL~eI~~ 198 (303)
||||+|||+|.||.. ++..+. +..+ .+.+.|+.... +.++++++|+||+|||.. ++..+++++.+
T Consensus 1 M~~i~iiG~G~~G~~-~a~~l~~g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~~~l~~ 78 (289)
T 2cvz_A 1 MEKVAFIGLGAMGYP-MAGHLARRFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVAEALYP 78 (289)
T ss_dssp -CCEEEECCSTTHHH-HHHHHHTTSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHHHHHTT
T ss_pred CCeEEEEcccHHHHH-HHHHHhCCCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHHHHHHh
Confidence 579999999999994 554432 1112 23344666555 777888999999999966 59999998888
Q ss_pred ccCCCCEEEEecCCC--cHHHHHhhCCC-CCceEEEecCc--HHhhhCCc-EEEEeCCCCCHHHHHHHHHHHHhcCCc-E
Q psy6714 199 VFNESNLLISVAGGV--PIKNMEQALPK-NSRIIRAMPNT--PALVRQGA-SVFVRGSSASDQDAQTVINLFKSVGTC-E 271 (303)
Q Consensus 199 ~L~~g~IVVSiaaGV--~ie~L~~~l~~-~~~VVr~mPn~--p~~v~~G~-til~~g~~~~~e~~e~V~~Lfs~iG~~-v 271 (303)
.++++++||++..+. +.+.+.+.++. +..++.. |.. +.....|. ++++.+ +++..+.++++| .+|.. +
T Consensus 79 ~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~ll-~~g~~~~ 153 (289)
T 2cvz_A 79 YLREGTYWVDATSGEPEASRRLAERLREKGVTYLDA-PVSGGTSGAEAGTLTVMLGG---PEEAVERVRPFL-AYAKKVV 153 (289)
T ss_dssp TCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC-CEESHHHHHHHTCEEEEEES---CHHHHHHHGGGC-TTEEEEE
T ss_pred hCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEe-cCCCChhHHhhCCeEEEECC---CHHHHHHHHHHH-hhcCCeE
Confidence 888899988665443 23566666643 2345554 533 33344555 444443 688889999999 99974 6
Q ss_pred EcCCCCchhhhhhccchHHHHHHHHHhh
Q psy6714 272 EVPEYLLDGITGLSGSGPAYRYEVTSNE 299 (303)
Q Consensus 272 ~vdE~~~Da~tAlsGsgPAf~~~~ie~~ 299 (303)
++++. .....+-.+.++|.+.++..+
T Consensus 154 ~~~~~--~~~~~~k~~~n~~~~~~~~~~ 179 (289)
T 2cvz_A 154 HVGPV--GAGHAVKAINNALLAVNLWAA 179 (289)
T ss_dssp EEEST--THHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCC--cHHHHHHHHHHHHHHHHHHHH
Confidence 66654 345555667888877776655
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.4e-13 Score=121.90 Aligned_cols=139 Identities=14% Similarity=0.226 Sum_probs=97.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHHH---
Q psy6714 132 RSDKQIAGTTERGPGALIASLN----------IVSK---ATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVALN--- 194 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL~--- 194 (303)
+|||+|||+|.||.. ++..+. +..+ .+.+.|+....++.++++++|+||+||| +.+++.++.
T Consensus 4 ~~~i~iiG~G~~G~~-~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~ 82 (301)
T 3cky_A 4 SIKIGFIGLGAMGKP-MAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPG 82 (301)
T ss_dssp CCEEEEECCCTTHHH-HHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTT
T ss_pred CCEEEEECccHHHHH-HHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcc
Confidence 589999999999994 554421 2222 3445688887888888999999999995 677999985
Q ss_pred hhccccCCCCEEEEecCCC--cHHHHHhhCCC-CCceEEEecCcHH--hhhCCc-EEEEeCCCCCHHHHHHHHHHHHhcC
Q psy6714 195 DIKPVFNESNLLISVAGGV--PIKNMEQALPK-NSRIIRAMPNTPA--LVRQGA-SVFVRGSSASDQDAQTVINLFKSVG 268 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV--~ie~L~~~l~~-~~~VVr~mPn~p~--~v~~G~-til~~g~~~~~e~~e~V~~Lfs~iG 268 (303)
++.+.++++++||++.++. +.+.|.+.++. +..++. .|..+. ....|. ++++.+ +++..+.+.++|+.+|
T Consensus 83 ~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~-~p~~~~~~~a~~g~~~~~~~g---~~~~~~~v~~ll~~~g 158 (301)
T 3cky_A 83 GVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVD-APVSGGTKGAEAGTLTIMVGA---SEAVFEKIQPVLSVIG 158 (301)
T ss_dssp CHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEE-CCEESHHHHHHHTCEEEEEES---CHHHHHHHHHHHHHHE
T ss_pred hHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEE-ccCCCCHHHHHcCCeEEEECC---CHHHHHHHHHHHHHhc
Confidence 7877788899999998888 45667666542 223332 232221 122354 555554 6888999999999999
Q ss_pred CcEE-cCC
Q psy6714 269 TCEE-VPE 275 (303)
Q Consensus 269 ~~v~-vdE 275 (303)
..++ +.+
T Consensus 159 ~~~~~~~~ 166 (301)
T 3cky_A 159 KDIYHVGD 166 (301)
T ss_dssp EEEEEEES
T ss_pred CCEEEeCC
Confidence 7644 443
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-12 Score=119.61 Aligned_cols=162 Identities=12% Similarity=0.185 Sum_probs=108.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----------hcH---HHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHHHhhc
Q psy6714 132 RSDKQIAGTTERGPGALIASLN----------IVS---KATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVALNDIK 197 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~----------r~~---e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL~eI~ 197 (303)
+|||+|||+|.||.. ++..+. +.. +.+.+.|+.+..++.++++++|+||+||| +.++++++.++.
T Consensus 30 ~~~I~iIG~G~mG~~-~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~ 108 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSG-IVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPS 108 (316)
T ss_dssp SSCEEEECCSHHHHH-HHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTT
T ss_pred CCeEEEEcccHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCch
Confidence 489999999999994 554421 222 23456788887888888899999999999 899999997653
Q ss_pred ---cccCCCCEEEEecCCCc--HHHHHhhCC-CCCceEE-EecCcHHhhhCCcE-EEEeCCCCCHHHHHHHHHHHHhcCC
Q psy6714 198 ---PVFNESNLLISVAGGVP--IKNMEQALP-KNSRIIR-AMPNTPALVRQGAS-VFVRGSSASDQDAQTVINLFKSVGT 269 (303)
Q Consensus 198 ---~~L~~g~IVVSiaaGV~--ie~L~~~l~-~~~~VVr-~mPn~p~~v~~G~t-il~~g~~~~~e~~e~V~~Lfs~iG~ 269 (303)
+.+.++++||++.++.. .+.+.+.++ .+..++. .+++.+...+.|.. +++.+ +++..+.+.++|+.+|.
T Consensus 109 ~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~~~g---~~~~~~~v~~ll~~~g~ 185 (316)
T 2uyy_A 109 GVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAG---DRGLYEDCSSCFQAMGK 185 (316)
T ss_dssp CGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEEE---CHHHHHHTHHHHHHHEE
T ss_pred hHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEEeCC---CHHHHHHHHHHHHHhcC
Confidence 66778899998766442 345555553 2234443 24555555666754 44444 57888999999999997
Q ss_pred cEEc-CCC-----CchhhhhhccchHHHHHHHHHhhh
Q psy6714 270 CEEV-PEY-----LLDGITGLSGSGPAYRYEVTSNEV 300 (303)
Q Consensus 270 ~v~v-dE~-----~~Da~tAlsGsgPAf~~~~ie~~~ 300 (303)
.+++ ++. ......++.+ .+++.+.|++.
T Consensus 186 ~~~~~~~~~~~~~~K~~~n~~~~---~~~~~~~Ea~~ 219 (316)
T 2uyy_A 186 TSFFLGEVGNAAKMMLIVNMVQG---SFMATIAEGLT 219 (316)
T ss_dssp EEEECSSTTHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CEEEeCCCCHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 6544 441 1223333333 36677777664
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-12 Score=119.59 Aligned_cols=142 Identities=18% Similarity=0.170 Sum_probs=95.8
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh---------cH---HHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHHH---
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI---------VS---KATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVALN--- 194 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r---------~~---e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL~--- 194 (303)
+||||+|||+|.||.. ++..+.. .. +.+.+.|+....++.++++++|+||+||| +.++..++.
T Consensus 2 ~~m~i~iiG~G~~G~~-~a~~l~~~g~~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~ 80 (295)
T 1yb4_A 2 NAMKLGFIGLGIMGSP-MAINLARAGHQLHVTTIGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEH 80 (295)
T ss_dssp --CEEEECCCSTTHHH-HHHHHHHTTCEEEECCSSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTT
T ss_pred CCCEEEEEccCHHHHH-HHHHHHhCCCEEEEEcCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCch
Confidence 4789999999999994 5544211 11 23445577777788888999999999996 445889997
Q ss_pred hhccccCCCCEEEEecCCCc--HHHHHhhCCCCCceEEEe--cCc--HHhhhCCc-EEEEeCCCCCHHHHHHHHHHHHhc
Q psy6714 195 DIKPVFNESNLLISVAGGVP--IKNMEQALPKNSRIIRAM--PNT--PALVRQGA-SVFVRGSSASDQDAQTVINLFKSV 267 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV~--ie~L~~~l~~~~~VVr~m--Pn~--p~~v~~G~-til~~g~~~~~e~~e~V~~Lfs~i 267 (303)
++.+.++++++||++.++.. .+.|.+.++. ..++++ |.. +.....|. ++++.+ +++..+.+.++|+.+
T Consensus 81 ~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~--~g~~~~~~p~~~~~~~a~~g~~~~~~~~---~~~~~~~~~~ll~~~ 155 (295)
T 1yb4_A 81 GCAKTSLQGKTIVDMSSISPIETKRFAQRVNE--MGADYLDAPVSGGEIGAREGTLSIMVGG---EQKVFDRVKPLFDIL 155 (295)
T ss_dssp SSTTSCCTTEEEEECSCCCHHHHHHHHHHHHT--TTEEEEECCEESHHHHHHHTCEEEEEES---CHHHHHHHHHHHHHH
T ss_pred hHhhcCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEEccCCCCHHHHHcCCeEEEECC---CHHHHHHHHHHHHHh
Confidence 78888888999998887743 4566666653 233443 221 11122454 455544 688889999999999
Q ss_pred CCc-EEcCCCCc
Q psy6714 268 GTC-EEVPEYLL 278 (303)
Q Consensus 268 G~~-v~vdE~~~ 278 (303)
|.. +++++...
T Consensus 156 g~~~~~~~~~~~ 167 (295)
T 1yb4_A 156 GKNITLVGGNGD 167 (295)
T ss_dssp EEEEEEEESTTH
T ss_pred cCCEEEeCCCCH
Confidence 975 55555333
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.3e-12 Score=126.85 Aligned_cols=134 Identities=15% Similarity=0.199 Sum_probs=98.1
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHHH---HhhC----CCeEecChHHhhcC---CCEEEEeeCC-ccHH
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSKA---TGTM----GAKITFDNKEVTLN---SEVIILAVKP-HIVP 190 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e~---l~e~----Gv~v~~d~~eav~~---ADIVILAVpP-~~v~ 190 (303)
+|+|||||+|.||.+ |+..+ ++..++ +.+. |+..+.++.++++. +|+||+|||+ +.++
T Consensus 15 ~~~IgvIGlG~MG~~-lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~ 93 (480)
T 2zyd_A 15 KQQIGVVGMAVMGRN-LALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTD 93 (480)
T ss_dssp CBSEEEECCSHHHHH-HHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHHH
T ss_pred CCeEEEEccHHHHHH-HHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHHH
Confidence 578999999999994 55442 233332 3332 78888888888887 9999999998 6899
Q ss_pred HHHHhhccccCCCCEEEEecCCCcH--HHHHhhCCC-CCceEEEecCc--HHhhhCCcEEEEeCCCCCHHHHHHHHHHHH
Q psy6714 191 VALNDIKPVFNESNLLISVAGGVPI--KNMEQALPK-NSRIIRAMPNT--PALVRQGASVFVRGSSASDQDAQTVINLFK 265 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSiaaGV~i--e~L~~~l~~-~~~VVr~mPn~--p~~v~~G~til~~g~~~~~e~~e~V~~Lfs 265 (303)
++++++.+.++++++||++.+|... ..+.+.+.. +..++ .+|.. +.....|.++++.+ +++..+.++++|+
T Consensus 94 ~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v-~~pv~gg~~~a~~g~~i~~gg---~~~~~~~v~~ll~ 169 (480)
T 2zyd_A 94 AAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFI-GTGVSGGEEGALKGPSIMPGG---QKEAYELVAPILT 169 (480)
T ss_dssp HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE-EEEEESHHHHHHHCCEEEEES---CHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCee-CCccccCHhHHhcCCeEEecC---CHHHHHHHHHHHH
Confidence 9999999999889999999988854 445555532 23444 23443 33345566666655 6889999999999
Q ss_pred hcCCc
Q psy6714 266 SVGTC 270 (303)
Q Consensus 266 ~iG~~ 270 (303)
.+|..
T Consensus 170 ~~g~~ 174 (480)
T 2zyd_A 170 KIAAV 174 (480)
T ss_dssp HHSCB
T ss_pred HHhcc
Confidence 99975
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.37 E-value=5.4e-12 Score=113.80 Aligned_cols=153 Identities=13% Similarity=0.131 Sum_probs=102.0
Q ss_pred CcEEEEcCChhhHHHHHHHH----------hh--cHH---HHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhc
Q psy6714 133 SDKQIAGTTERGPGALIASL----------NI--VSK---ATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al----------~r--~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~ 197 (303)
|||+|||+|.||.+ ++..+ ++ ..+ .+.+.|+. .++.++++++|+||+|||++...+.+.++.
T Consensus 1 M~I~iIG~G~mG~~-la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~~~~~ 77 (264)
T 1i36_A 1 LRVGFIGFGEVAQT-LASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAARRAG 77 (264)
T ss_dssp CEEEEESCSHHHHH-HHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHHHHHH
T ss_pred CeEEEEechHHHHH-HHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHHHHHH
Confidence 78999999999994 55432 12 222 33445776 677888899999999999987666677787
Q ss_pred cccCCCCEEEEecCCCcH---HHHHhhCCCCCceEEE-ecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCc-EE
Q psy6714 198 PVFNESNLLISVAGGVPI---KNMEQALPKNSRIIRA-MPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTC-EE 272 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV~i---e~L~~~l~~~~~VVr~-mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~ 272 (303)
+.+++ +||++ +++.. +.+.+.++... ++.. +-..+.....|..+++.++. + +.+++ |+.+|.. ++
T Consensus 78 ~~~~~--~vi~~-s~~~~~~~~~l~~~~~~~g-~~~~~v~~~~~~~~~g~~~~~~g~~---~--~~~~~-l~~~g~~~~~ 147 (264)
T 1i36_A 78 RHVRG--IYVDI-NNISPETVRMASSLIEKGG-FVDAAIMGSVRRKGADIRIIASGRD---A--EEFMK-LNRYGLNIEV 147 (264)
T ss_dssp TTCCS--EEEEC-SCCCHHHHHHHHHHCSSSE-EEEEEECSCHHHHGGGCEEEEESTT---H--HHHHG-GGGGTCEEEE
T ss_pred HhcCc--EEEEc-cCCCHHHHHHHHHHHhhCC-eeeeeeeCCccccccCCeEEecCCc---H--HHhhh-HHHcCCeeEE
Confidence 77754 77776 45543 46777776421 2221 12234444556665555532 2 77888 9999985 56
Q ss_pred cCCCCchhhhhhccchHHHHHHHHHhh
Q psy6714 273 VPEYLLDGITGLSGSGPAYRYEVTSNE 299 (303)
Q Consensus 273 vdE~~~Da~tAlsGsgPAf~~~~ie~~ 299 (303)
++|+ +....++-.+.++|++.++..+
T Consensus 148 ~~~~-~g~~~~~kl~~n~~~~~~~~~~ 173 (264)
T 1i36_A 148 RGRE-PGDASAIKMLRSSYTKGVSALL 173 (264)
T ss_dssp CSSS-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-cCHHHHHHHHHHHHHHHHHHHH
Confidence 6654 6777777788898876665544
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.2e-12 Score=119.38 Aligned_cols=156 Identities=21% Similarity=0.292 Sum_probs=104.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----------h--cHHHHhhCCCeE-------------ecChHHhhcCCCEEEEeeCC
Q psy6714 132 RSDKQIAGTTERGPGALIASLN----------I--VSKATGTMGAKI-------------TFDNKEVTLNSEVIILAVKP 186 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~----------r--~~e~l~e~Gv~v-------------~~d~~eav~~ADIVILAVpP 186 (303)
+|||+|||+|.||+ .++..+. + ..+.+.+.|+.+ +.+..+ +.++|+||+|||+
T Consensus 3 ~mkI~IiGaG~~G~-~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~ 80 (335)
T 3ghy_A 3 LTRICIVGAGAVGG-YLGARLALAGEAINVLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA 80 (335)
T ss_dssp CCCEEEESCCHHHH-HHHHHHHHTTCCEEEECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH
T ss_pred CCEEEEECcCHHHH-HHHHHHHHCCCEEEEEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc
Confidence 58999999999999 5654432 1 123344556543 235544 6899999999999
Q ss_pred ccHHHHHHhhccccCCCCEEEEecCCCc--------------------HHHHHhhCCCCCceEEEe---------cCcHH
Q psy6714 187 HIVPVALNDIKPVFNESNLLISVAGGVP--------------------IKNMEQALPKNSRIIRAM---------PNTPA 237 (303)
Q Consensus 187 ~~v~~VL~eI~~~L~~g~IVVSiaaGV~--------------------ie~L~~~l~~~~~VVr~m---------Pn~p~ 237 (303)
+++.++++++.++++++++||++++|+. .+.+.+.++. ..++..+ |+...
T Consensus 81 ~~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~-~~v~~gv~~~~a~~~~pg~v~ 159 (335)
T 3ghy_A 81 PALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPT-RHVLGCVVHLTCATVSPGHIR 159 (335)
T ss_dssp HHHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCG-GGEEEEEECCCEEESSTTEEE
T ss_pred hhHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCc-ccEEEEEEEEEEEEcCCcEEE
Confidence 9999999999999999999999999963 2367777874 3554333 33322
Q ss_pred hhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEcCCCC-------------chhhhhhccchHH
Q psy6714 238 LVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPEYL-------------LDGITGLSGSGPA 290 (303)
Q Consensus 238 ~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~vdE~~-------------~Da~tAlsGsgPA 290 (303)
..+.+.+.+-.....+.+..+.+.++|+..|..++++++. ++.++++.++.-+
T Consensus 160 ~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g 225 (335)
T 3ghy_A 160 HGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATCD 225 (335)
T ss_dssp ECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHH
T ss_pred ECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHHHHHHHHHHHhhhhHHHHHhCCChH
Confidence 2233332222212234567788999999999887776543 3555666665433
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-12 Score=120.17 Aligned_cols=150 Identities=17% Similarity=0.231 Sum_probs=105.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHh---------hcH---HHHhhCCCe-------------EecChHHhhcCCCEEEEeeCC
Q psy6714 132 RSDKQIAGTTERGPGALIASLN---------IVS---KATGTMGAK-------------ITFDNKEVTLNSEVIILAVKP 186 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~---------r~~---e~l~e~Gv~-------------v~~d~~eav~~ADIVILAVpP 186 (303)
+|||+|||+|.||+ .++..+. ... +.+.+.|+. .+.+. +.++++|+||+|||+
T Consensus 19 ~~kI~IiGaGa~G~-~~a~~L~~~G~~V~l~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavk~ 96 (318)
T 3hwr_A 19 GMKVAIMGAGAVGC-YYGGMLARAGHEVILIARPQHVQAIEATGLRLETQSFDEQVKVSASSDP-SAVQGADLVLFCVKS 96 (318)
T ss_dssp -CEEEEESCSHHHH-HHHHHHHHTTCEEEEECCHHHHHHHHHHCEEEECSSCEEEECCEEESCG-GGGTTCSEEEECCCG
T ss_pred CCcEEEECcCHHHH-HHHHHHHHCCCeEEEEEcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCH-HHcCCCCEEEEEccc
Confidence 78999999999999 4655432 112 233344432 23444 446899999999999
Q ss_pred ccHHHHHHhhccccCCCCEEEEecCCCcH-HHHHhhCCCCCceE---------EEecCcHHhhhCCcEEEEeCCCCCHHH
Q psy6714 187 HIVPVALNDIKPVFNESNLLISVAGGVPI-KNMEQALPKNSRII---------RAMPNTPALVRQGASVFVRGSSASDQD 256 (303)
Q Consensus 187 ~~v~~VL~eI~~~L~~g~IVVSiaaGV~i-e~L~~~l~~~~~VV---------r~mPn~p~~v~~G~til~~g~~~~~e~ 256 (303)
+++.++++++.++++++++||++++|+.. +.+.+.++ ..++ ...|++...++.|.+. .+. .+.
T Consensus 97 ~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~~~~--~~vl~g~~~~~a~~~gP~~~~~~~~g~~~--ig~---~~~ 169 (318)
T 3hwr_A 97 TDTQSAALAMKPALAKSALVLSLQNGVENADTLRSLLE--QEVAAAVVYVATEMAGPGHVRHHGRGELV--IEP---TSH 169 (318)
T ss_dssp GGHHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHHHCC--SEEEEEEEEEEEEEEETTEEEEEEEEEEE--ECC---CTT
T ss_pred ccHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHHHcC--CcEEEEEEEEeEEEcCCeEEEEcCCceEE--EcC---CHH
Confidence 99999999999999999999999999998 67888886 2232 3346666555555433 343 234
Q ss_pred HHHHHHHHHhcCCcEEcCCCC-------------chhhhhhccchHH
Q psy6714 257 AQTVINLFKSVGTCEEVPEYL-------------LDGITGLSGSGPA 290 (303)
Q Consensus 257 ~e~V~~Lfs~iG~~v~vdE~~-------------~Da~tAlsGsgPA 290 (303)
.+.+.++|+..|..++++++. ++.++++.+|.-+
T Consensus 170 ~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g 216 (318)
T 3hwr_A 170 GANLAAIFAAAGVPVETSDNVRGALWAKLILNCAYNALSAITQLPYG 216 (318)
T ss_dssp THHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHhCCCCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHH
Confidence 578999999999988877653 5566777766544
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=8.1e-12 Score=110.70 Aligned_cols=156 Identities=16% Similarity=0.195 Sum_probs=100.0
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhc
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN----------IVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~ 197 (303)
.+|||+|||+|.||. .++..+. +..+ .+.+.|+... +..++++++|+||+|+|++.+.++++ +.
T Consensus 27 ~~~~I~iiG~G~~G~-~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~~~~~~~v~~-l~ 103 (215)
T 2vns_A 27 EAPKVGILGSGDFAR-SLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVFREHYSSLCS-LS 103 (215)
T ss_dssp --CCEEEECCSHHHH-HHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSCGGGSGGGGG-GH
T ss_pred CCCEEEEEccCHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCChHHHHHHHH-HH
Confidence 368999999999999 4554431 2222 2334577765 77788899999999999988888775 66
Q ss_pred cccCCCCEEEEecCCCcHHHHH----------hhCCCCCceEEEecCcHHh-hhC----Cc-EEEEeCCCCCHHHHHHHH
Q psy6714 198 PVFNESNLLISVAGGVPIKNME----------QALPKNSRIIRAMPNTPAL-VRQ----GA-SVFVRGSSASDQDAQTVI 261 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV~ie~L~----------~~l~~~~~VVr~mPn~p~~-v~~----G~-til~~g~~~~~e~~e~V~ 261 (303)
+.+ ++++||++++|++.+.+. +.++ +.++++.|...... ... +. .++..+ .+++.++.++
T Consensus 104 ~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~-~~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g--~~~~~~~~v~ 179 (215)
T 2vns_A 104 DQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP-TCTVVKAFNVISAWTLQAGPRDGNRQVPICG--DQPEAKRAVS 179 (215)
T ss_dssp HHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT-TSEEEEECTTBCHHHHHTCSCSSCCEEEEEE--SCHHHHHHHH
T ss_pred Hhc-CCCEEEEeCCCcccccccccccHHHHHHHHCC-CCeEEeccccccHhHhcccccCCceeEEEec--CCHHHHHHHH
Confidence 666 788999999999876553 6676 36788887332221 112 22 233333 2788999999
Q ss_pred HHHHhcCCc-EEcCCCCchhhhhhccchHHHHHHHH
Q psy6714 262 NLFKSVGTC-EEVPEYLLDGITGLSGSGPAYRYEVT 296 (303)
Q Consensus 262 ~Lfs~iG~~-v~vdE~~~Da~tAlsGsgPAf~~~~i 296 (303)
++|+.+|.. +.+.+ ......+ -..++|+|.++
T Consensus 180 ~ll~~~G~~~~~~g~--~~~~~~~-e~~~~~~~~~~ 212 (215)
T 2vns_A 180 EMALAMGFMPVDMGS--LASAWEV-EAMPLRLLPAW 212 (215)
T ss_dssp HHHHHTTCEEEECCS--GGGHHHH-HHSCCBC----
T ss_pred HHHHHcCCceEeecc--hhhhhHh-hhhhhhheecc
Confidence 999999985 45543 2222222 23445555443
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=9.2e-12 Score=123.14 Aligned_cols=135 Identities=14% Similarity=0.161 Sum_probs=97.8
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHHH---HhhC----CCeEecChHHhhcC---CCEEEEeeCC-ccHH
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSKA---TGTM----GAKITFDNKEVTLN---SEVIILAVKP-HIVP 190 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e~---l~e~----Gv~v~~d~~eav~~---ADIVILAVpP-~~v~ 190 (303)
+|||||||+|.||.. ++..+ ++..++ +.+. |+..+.++.++++. +|+||+|||+ +.+.
T Consensus 5 ~~~IgvIG~G~mG~~-lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~ 83 (474)
T 2iz1_A 5 QANFGVVGMAVMGKN-LALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATD 83 (474)
T ss_dssp TBSEEEECCSHHHHH-HHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHH
T ss_pred CCcEEEEeeHHHHHH-HHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHH
Confidence 478999999999994 55442 222332 3332 77777888888876 9999999998 5899
Q ss_pred HHHHhhccccCCCCEEEEecCCCcH--HHHHhhCCC-CCceEEEecCc--HHhhhCCcEEEEeCCCCCHHHHHHHHHHHH
Q psy6714 191 VALNDIKPVFNESNLLISVAGGVPI--KNMEQALPK-NSRIIRAMPNT--PALVRQGASVFVRGSSASDQDAQTVINLFK 265 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSiaaGV~i--e~L~~~l~~-~~~VVr~mPn~--p~~v~~G~til~~g~~~~~e~~e~V~~Lfs 265 (303)
++++++.+.++++++||++.++... ..+.+.+.. +..++ .+|.. +.....|.++++.+ +++..+.++++|+
T Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v-~~pv~gg~~~a~~g~~i~~gg---~~~~~~~v~~ll~ 159 (474)
T 2iz1_A 84 ATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFI-GTGVSGGEKGALLGPSMMPGG---QKEAYDLVAPIFE 159 (474)
T ss_dssp HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEE-EEEECSHHHHHHHCCCEEEEE---CHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEE-CCCCCCChhhhccCCeEEecC---CHHHHHHHHHHHH
Confidence 9999999999889999998888743 556666653 23333 24543 33344566665554 6889999999999
Q ss_pred hcCCcE
Q psy6714 266 SVGTCE 271 (303)
Q Consensus 266 ~iG~~v 271 (303)
.+|..+
T Consensus 160 ~~g~~~ 165 (474)
T 2iz1_A 160 QIAAKA 165 (474)
T ss_dssp HHSCBC
T ss_pred HHhccc
Confidence 999864
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-11 Score=123.14 Aligned_cols=108 Identities=15% Similarity=0.145 Sum_probs=87.7
Q ss_pred eEecChHHhhcCCCEEEEeeCCc--cHHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCC
Q psy6714 165 KITFDNKEVTLNSEVIILAVKPH--IVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQG 242 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVpP~--~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G 242 (303)
..+.+. +.+++||+||+||+++ ...+++.++.++++++++|+|.++++++..|.+.+.....++..|+..|..+. .
T Consensus 74 ~~~~~~-~~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~~~~~p~~~ig~hf~~Pa~v~-~ 151 (483)
T 3mog_A 74 IPVTDI-HALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLHFFNPAPVM-K 151 (483)
T ss_dssp EEECCG-GGGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTSSSGGGEEEEEECSSTTTC-C
T ss_pred eEeCCH-HHhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHHHccCccceEEeeecChhhhC-C
Confidence 455565 4688999999999876 34688889988888999988999999999988877644579999998876654 3
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEcC
Q psy6714 243 ASVFVRGSSASDQDAQTVINLFKSVGTC-EEVP 274 (303)
Q Consensus 243 ~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~vd 274 (303)
.+.++.+...+++.++.+..+++.+|+. +.+.
T Consensus 152 Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~ 184 (483)
T 3mog_A 152 LVEVVSGLATAAEVVEQLCELTLSWGKQPVRCH 184 (483)
T ss_dssp EEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHhCCEEEEEe
Confidence 5667788888999999999999999985 5553
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-11 Score=115.81 Aligned_cols=132 Identities=13% Similarity=0.201 Sum_probs=94.7
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHH---HHhhCCCeEecChHHhhcCC---CEEEEeeCCccHHHHHHh
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSK---ATGTMGAKITFDNKEVTLNS---EVIILAVKPHIVPVALND 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e~Gv~v~~d~~eav~~A---DIVILAVpP~~v~~VL~e 195 (303)
+|||||||+|.||.+ ++..+ ++..+ .+.+.|+..+.++.++++.+ |+||+|||+..+.+++.+
T Consensus 22 ~mkIgiIGlG~mG~~-~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~~v~~vl~~ 100 (358)
T 4e21_A 22 SMQIGMIGLGRMGAD-MVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAAVVDSMLQR 100 (358)
T ss_dssp CCEEEEECCSHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGGGHHHHHHH
T ss_pred CCEEEEECchHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHHHHHHHHHH
Confidence 589999999999995 55442 23333 34567888888999999888 999999998899999999
Q ss_pred hccccCCCCEEEEecCCCcH--HHHHhhCC-CCCceEEEecC--cHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcC
Q psy6714 196 IKPVFNESNLLISVAGGVPI--KNMEQALP-KNSRIIRAMPN--TPALVRQGASVFVRGSSASDQDAQTVINLFKSVG 268 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~i--e~L~~~l~-~~~~VVr~mPn--~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG 268 (303)
+.+.++++++||++.++... ..+.+.+. .+..++.+ |. .+.....|.++++.+ +++.++.++.+|+.+|
T Consensus 101 l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vda-pVsGg~~~a~~G~~im~GG---~~~a~~~~~~ll~~lg 174 (358)
T 4e21_A 101 MTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDV-GTSGGIFGLERGYCLMIGG---EKQAVERLDPVFRTLA 174 (358)
T ss_dssp HGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEE-EEECGGGHHHHCCEEEEES---CHHHHHHTHHHHHHHS
T ss_pred HHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeC-CCCCCHHHHhcCCeeeecC---CHHHHHHHHHHHHHhc
Confidence 99999899999977655432 33444342 23334432 21 122223455666666 6889999999999999
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.6e-11 Score=117.24 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=104.8
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHH-----------HHhhCC-------------CeEecChHHhhcCC
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSK-----------ATGTMG-------------AKITFDNKEVTLNS 177 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e-----------~l~e~G-------------v~v~~d~~eav~~A 177 (303)
++||+|||+|.||.+ ++..+ ++..+ ++.+.| +..+.+. +.+++|
T Consensus 54 i~kVaVIGaG~MG~~-IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl-~al~~a 131 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKA-MAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDF-HKLSNC 131 (460)
T ss_dssp CCEEEEECCSHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCG-GGCTTC
T ss_pred CCEEEEECCCHHHHH-HHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCH-HHHccC
Confidence 678999999999995 44331 11111 222333 2455666 468899
Q ss_pred CEEEEeeCCc--cHHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHH
Q psy6714 178 EVIILAVKPH--IVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQ 255 (303)
Q Consensus 178 DIVILAVpP~--~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e 255 (303)
|+||+||+.+ ...+++.+|.+.+++++||+|.++++++..|.+.++...+++..|+.-|..... ..-++.+...+++
T Consensus 132 DlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~~~~~p~r~iG~HffnPv~~m~-LvEIv~g~~Ts~e 210 (460)
T 3k6j_A 132 DLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLVGIHFFNPANVIR-LVEIIYGSHTSSQ 210 (460)
T ss_dssp SEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHTTSSSGGGEEEEECCSSTTTCC-EEEEECCSSCCHH
T ss_pred CEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHHhccCCcceEEEEecchhhhCC-EEEEEeCCCCCHH
Confidence 9999999854 345778889888989999999999999999988876434789999888765433 3456677778999
Q ss_pred HHHHHHHHHHhcCCc-EEcCC
Q psy6714 256 DAQTVINLFKSVGTC-EEVPE 275 (303)
Q Consensus 256 ~~e~V~~Lfs~iG~~-v~vdE 275 (303)
.++.+.++++.+|+. +.+.+
T Consensus 211 ~~~~~~~l~~~lGk~~v~v~d 231 (460)
T 3k6j_A 211 AIATAFQACESIKKLPVLVGN 231 (460)
T ss_dssp HHHHHHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHhCCEEEEEec
Confidence 999999999999985 55543
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.9e-12 Score=117.02 Aligned_cols=139 Identities=9% Similarity=0.136 Sum_probs=90.0
Q ss_pred CCcEEEEcCChhhHHHHHHH---------HhhcHHH---HhhCCCeEecChHHhhcCCCEEEEeeCC-ccHHHHH-Hhhc
Q psy6714 132 RSDKQIAGTTERGPGALIAS---------LNIVSKA---TGTMGAKITFDNKEVTLNSEVIILAVKP-HIVPVAL-NDIK 197 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a---------l~r~~e~---l~e~Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL-~eI~ 197 (303)
..||||||||.||.+|.... ++++.++ +.+.|+.+..++.|++++||+||+||++ .++.+++ .++.
T Consensus 5 s~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~ 84 (297)
T 4gbj_A 5 SEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELV 84 (297)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHH
T ss_pred CCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHH
Confidence 35899999999999754333 2344433 4567999999999999999999999985 4556655 4566
Q ss_pred cccCCCCEEEEecCCCcHH---HHHhhCC-CCCceEEE-ecCcHHhhhCC-cEEEEeCCCCCHHHHHHHHHHHHhcCCc-
Q psy6714 198 PVFNESNLLISVAGGVPIK---NMEQALP-KNSRIIRA-MPNTPALVRQG-ASVFVRGSSASDQDAQTVINLFKSVGTC- 270 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV~ie---~L~~~l~-~~~~VVr~-mPn~p~~v~~G-~til~~g~~~~~e~~e~V~~Lfs~iG~~- 270 (303)
+.++++++||.+. .++.+ .+.+.+. .+..++.+ +...+.....| .++++.+ +++.++.++.+|+.+|..
T Consensus 85 ~~~~~~~iiid~s-T~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG---~~~~~~~~~~~l~~~g~~i 160 (297)
T 4gbj_A 85 EKLGKDGVHVSMS-TISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSG---NAGAKERIKPIVENFVKGV 160 (297)
T ss_dssp HHHCTTCEEEECS-CCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEE---CHHHHHHHHHHHHTTCSEE
T ss_pred hhcCCCeEEEECC-CCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeeccc---chhHHHHHHHHHHHhhCCe
Confidence 6677888888554 34443 3444332 12333322 12223333344 4666666 788999999999999985
Q ss_pred EEcC
Q psy6714 271 EEVP 274 (303)
Q Consensus 271 v~vd 274 (303)
+++-
T Consensus 161 ~~~g 164 (297)
T 4gbj_A 161 FDFG 164 (297)
T ss_dssp EECC
T ss_pred EEec
Confidence 4453
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-11 Score=111.68 Aligned_cols=138 Identities=17% Similarity=0.168 Sum_probs=95.8
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcH---HHHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHH---H
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVS---KATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVAL---N 194 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~---e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL---~ 194 (303)
||||+|||+|.||.+ ++..+ +++. +.+.+.|+....++.+++++||+||+|||+. ++++++ +
T Consensus 1 M~~I~iiG~G~mG~~-~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~ 79 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGP-MAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGAN 79 (287)
T ss_dssp CCCEEEECCSTTHHH-HHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTT
T ss_pred CCeEEEEccCHHHHH-HHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCch
Confidence 579999999999995 55432 2222 3455668888889999999999999999975 899999 7
Q ss_pred hhccccCCCCEEEEecCCCcHH---HHHhhCCC-CCceEEEecC--cHHhhhCCc-EEEEeCCCCCHHHHHHHHHHHHhc
Q psy6714 195 DIKPVFNESNLLISVAGGVPIK---NMEQALPK-NSRIIRAMPN--TPALVRQGA-SVFVRGSSASDQDAQTVINLFKSV 267 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV~ie---~L~~~l~~-~~~VVr~mPn--~p~~v~~G~-til~~g~~~~~e~~e~V~~Lfs~i 267 (303)
++.+.+.++++||++.. ++.. .+.+.+.. +..++.. |. .+.....|. ++++.+ +++..+.++++|+.+
T Consensus 80 ~l~~~l~~g~~vv~~st-~~~~~~~~~~~~~~~~g~~~~~~-pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~ 154 (287)
T 3pdu_A 80 GVLEGIGGGRGYIDMST-VDDETSTAIGAAVTARGGRFLEA-PVSGTKKPAEDGTLIILAAG---DQSLFTDAGPAFAAL 154 (287)
T ss_dssp CGGGTCCTTCEEEECSC-CCHHHHHHHHHHHHHTTCEEEEC-CEECCHHHHHHTCEEEEEEE---CHHHHHHTHHHHHHH
T ss_pred hhhhcccCCCEEEECCC-CCHHHHHHHHHHHHHcCCEEEEC-CccCCHHHHhcCCEEEEEeC---CHHHHHHHHHHHHHh
Confidence 88888888999987654 3332 34333321 2333332 32 233334454 555655 688999999999999
Q ss_pred CCc-EEcCC
Q psy6714 268 GTC-EEVPE 275 (303)
Q Consensus 268 G~~-v~vdE 275 (303)
|.. +.+.+
T Consensus 155 g~~~~~~g~ 163 (287)
T 3pdu_A 155 GKKCLHLGE 163 (287)
T ss_dssp EEEEEECSS
T ss_pred CCCEEEcCC
Confidence 974 55654
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-11 Score=123.58 Aligned_cols=134 Identities=18% Similarity=0.198 Sum_probs=97.4
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHH---HHhh-----CCCeEecChHHhhcC---CCEEEEeeCC-ccH
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSK---ATGT-----MGAKITFDNKEVTLN---SEVIILAVKP-HIV 189 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e-----~Gv~v~~d~~eav~~---ADIVILAVpP-~~v 189 (303)
..+|||||+|.||.+ |+..+ ++..+ .+.+ .|+..+.++.++++. +|+||+|||+ +.+
T Consensus 10 ~~~IgvIGlG~MG~~-lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v 88 (497)
T 2p4q_A 10 SADFGLIGLAVMGQN-LILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPV 88 (497)
T ss_dssp CCSEEEECCSHHHHH-HHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHH
T ss_pred CCCEEEEeeHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHH
Confidence 358999999999995 55442 22222 3334 577777888888877 9999999998 589
Q ss_pred HHHHHhhccccCCCCEEEEecCCCcH--HHHHhhCCC-CCceEEEec--CcHHhhhCCcEEEEeCCCCCHHHHHHHHHHH
Q psy6714 190 PVALNDIKPVFNESNLLISVAGGVPI--KNMEQALPK-NSRIIRAMP--NTPALVRQGASVFVRGSSASDQDAQTVINLF 264 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSiaaGV~i--e~L~~~l~~-~~~VVr~mP--n~p~~v~~G~til~~g~~~~~e~~e~V~~Lf 264 (303)
+++++++.+.++++++||++.++... ..+.+.+.. +..++. +| +.+.....|.++++.+ +++..+.++++|
T Consensus 89 ~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~-~pVsgg~~~a~~G~~im~gg---~~e~~~~v~~ll 164 (497)
T 2p4q_A 89 DALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVG-SGVSGGEEGARYGPSLMPGG---SEEAWPHIKNIF 164 (497)
T ss_dssp HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-EEEESHHHHHHHCCEEEEEE---CGGGHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeC-CCcccChhHhhcCCeEEecC---CHHHHHHHHHHH
Confidence 99999999999889999998887754 345554432 234442 34 4455555677666655 677889999999
Q ss_pred HhcCCc
Q psy6714 265 KSVGTC 270 (303)
Q Consensus 265 s~iG~~ 270 (303)
+.+|..
T Consensus 165 ~~~g~~ 170 (497)
T 2p4q_A 165 QSISAK 170 (497)
T ss_dssp HHHSCE
T ss_pred HHhcCc
Confidence 999975
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-11 Score=112.79 Aligned_cols=139 Identities=15% Similarity=0.179 Sum_probs=96.2
Q ss_pred CCCcEEEEcCChhhHHHHHHHH----------hhcH---HHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH---
Q psy6714 131 NRSDKQIAGTTERGPGALIASL----------NIVS---KATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL--- 193 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al----------~r~~---e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL--- 193 (303)
.||||+|||+|.||.+ ++..+ +++. +.+.+.|+....++.+++++||+||+||| +.++++++
T Consensus 20 ~m~~I~iIG~G~mG~~-~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~ 98 (310)
T 3doj_A 20 HMMEVGFLGLGIMGKA-MSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDK 98 (310)
T ss_dssp CSCEEEEECCSHHHHH-HHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHST
T ss_pred cCCEEEEECccHHHHH-HHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCc
Confidence 4799999999999995 55442 2222 34557799888999999999999999997 56899999
Q ss_pred HhhccccCCCCEEEEecCCCcHH---HHHhhCCC-CCceEEEecC--cHHhhhCCc-EEEEeCCCCCHHHHHHHHHHHHh
Q psy6714 194 NDIKPVFNESNLLISVAGGVPIK---NMEQALPK-NSRIIRAMPN--TPALVRQGA-SVFVRGSSASDQDAQTVINLFKS 266 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaGV~ie---~L~~~l~~-~~~VVr~mPn--~p~~v~~G~-til~~g~~~~~e~~e~V~~Lfs~ 266 (303)
+++.+.+.++++||++. +++.. .+.+.+.. +..++. +|. .+.....|. ++++.+ +++.++.++++|+.
T Consensus 99 ~~l~~~l~~g~~vv~~s-t~~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~~a~~g~l~i~~gg---~~~~~~~~~~ll~~ 173 (310)
T 3doj_A 99 GGVLEQICEGKGYIDMS-TVDAETSLKINEAITGKGGRFVE-GPVSGSKKPAEDGQLIILAAG---DKALFEESIPAFDV 173 (310)
T ss_dssp TCGGGGCCTTCEEEECS-CCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCEEEEEEE---CHHHHHHHHHHHHH
T ss_pred hhhhhccCCCCEEEECC-CCCHHHHHHHHHHHHHcCCEEEe-CCCCCChhHHhcCCeEEEEcC---CHHHHHHHHHHHHH
Confidence 78888888999988765 44443 33333321 223332 232 122223343 466665 68899999999999
Q ss_pred cCCc-EEcCC
Q psy6714 267 VGTC-EEVPE 275 (303)
Q Consensus 267 iG~~-v~vdE 275 (303)
+|.. +.+.+
T Consensus 174 ~g~~~~~~g~ 183 (310)
T 3doj_A 174 LGKRSFYLGQ 183 (310)
T ss_dssp HEEEEEECSS
T ss_pred hCCCEEEeCC
Confidence 9974 56654
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-11 Score=112.17 Aligned_cols=146 Identities=14% Similarity=0.153 Sum_probs=99.3
Q ss_pred CcEEEEcCChhhHHHHHHHH----------hhcH---HHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH---Hh
Q psy6714 133 SDKQIAGTTERGPGALIASL----------NIVS---KATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL---ND 195 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al----------~r~~---e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL---~e 195 (303)
|||+|||+|.||.+ ++..+ +++. +.+.+.|+....+..+++++||+||+||| +.++++++ ++
T Consensus 2 ~~i~iIG~G~mG~~-~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~ 80 (287)
T 3pef_A 2 QKFGFIGLGIMGSA-MAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHG 80 (287)
T ss_dssp CEEEEECCSHHHHH-HHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred CEEEEEeecHHHHH-HHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcch
Confidence 78999999999995 55442 2222 34556789888899999999999999999 68999999 88
Q ss_pred hccccCCCCEEEEecCCCcHH---HHHhhCCC-CCceEEEecCc--HHhhhCCc-EEEEeCCCCCHHHHHHHHHHHHhcC
Q psy6714 196 IKPVFNESNLLISVAGGVPIK---NMEQALPK-NSRIIRAMPNT--PALVRQGA-SVFVRGSSASDQDAQTVINLFKSVG 268 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~ie---~L~~~l~~-~~~VVr~mPn~--p~~v~~G~-til~~g~~~~~e~~e~V~~Lfs~iG 268 (303)
+.+.++++++||++ ++++.. .+.+.+.. +..++. +|.. +.....|. ++++.+ +++..+.++++|+.+|
T Consensus 81 l~~~l~~~~~vi~~-st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g 155 (287)
T 3pef_A 81 VLEGIGEGRGYVDM-STVDPATSQRIGVAVVAKGGRFLE-APVSGSKKPAEDGTLIILAAG---DRNLYDEAMPGFEKMG 155 (287)
T ss_dssp HHHHCCTTCEEEEC-SCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCEEEEEEE---CHHHHHHHHHHHHHHE
T ss_pred HhhcCCCCCEEEeC-CCCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHHHhcCCEEEEEeC---CHHHHHHHHHHHHHhC
Confidence 88888889998876 455543 33333321 223332 3321 22223343 555655 6788999999999999
Q ss_pred C-cEEcCCCCchhhhhh
Q psy6714 269 T-CEEVPEYLLDGITGL 284 (303)
Q Consensus 269 ~-~v~vdE~~~Da~tAl 284 (303)
. ++.+.+..+...+-+
T Consensus 156 ~~~~~~g~~g~~~~~Kl 172 (287)
T 3pef_A 156 KKIIHLGDVGKGAEMKL 172 (287)
T ss_dssp EEEEECSSTTHHHHHHH
T ss_pred CCeEEeCCCCHHHHHHH
Confidence 7 466665544444333
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.9e-11 Score=109.85 Aligned_cols=137 Identities=14% Similarity=0.183 Sum_probs=95.1
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcH---HHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHHHhhc
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVS---KATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVALNDIK 197 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~---e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL~eI~ 197 (303)
+|||+|||+|.||.+ ++..+ +++. +.+.+.|+..+.+..++++ ||+||+||| +.+++++++++.
T Consensus 15 ~~~I~vIG~G~mG~~-~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~~~l~ 92 (296)
T 3qha_A 15 QLKLGYIGLGNMGAP-MATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVVGELA 92 (296)
T ss_dssp CCCEEEECCSTTHHH-HHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHHHHHH
T ss_pred CCeEEEECcCHHHHH-HHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHHHHHH
Confidence 479999999999994 55543 2222 3456779988889999999 999999999 568999999998
Q ss_pred cccCCCCEEEEecCCCcH---HHHHhhCCC-CCceEEEecC--cHHhhhCCc-EEEEeCCCCCHHHHHHHHHHHHhcCCc
Q psy6714 198 PVFNESNLLISVAGGVPI---KNMEQALPK-NSRIIRAMPN--TPALVRQGA-SVFVRGSSASDQDAQTVINLFKSVGTC 270 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV~i---e~L~~~l~~-~~~VVr~mPn--~p~~v~~G~-til~~g~~~~~e~~e~V~~Lfs~iG~~ 270 (303)
+.++++++||++.. +.. ..+.+.+.. +..++.. |. .+.....|. ++++.+ +++..+.++++|+.+|..
T Consensus 93 ~~l~~g~ivv~~st-~~~~~~~~~~~~~~~~g~~~~~~-pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~ 167 (296)
T 3qha_A 93 GHAKPGTVIAIHST-ISDTTAVELARDLKARDIHIVDA-PVSGGAAAAARGELATMVGA---DREVYERIKPAFKHWAAV 167 (296)
T ss_dssp TTCCTTCEEEECSC-CCHHHHHHHHHHHGGGTCEEEEC-CEESCHHHHHHTCEEEEEEC---CHHHHHHHHHHHHHHEEE
T ss_pred HhcCCCCEEEEeCC-CCHHHHHHHHHHHHHcCCEEEeC-CCcCCHHHHhcCCccEEecC---CHHHHHHHHHHHHHHcCC
Confidence 88889999886654 433 234444432 2233321 22 122233444 555555 688999999999999974
Q ss_pred -EEcCC
Q psy6714 271 -EEVPE 275 (303)
Q Consensus 271 -v~vdE 275 (303)
+.+.+
T Consensus 168 ~~~~g~ 173 (296)
T 3qha_A 168 VIHAGE 173 (296)
T ss_dssp EEEEES
T ss_pred eEEcCC
Confidence 55543
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.9e-11 Score=109.92 Aligned_cols=139 Identities=15% Similarity=0.213 Sum_probs=96.1
Q ss_pred CCCcEEEEcCChhhHHHHHHHH----------hhcHH---HHhhCCCeE-ecChHHhhcCCCEEEEeeCC-ccHHHHH--
Q psy6714 131 NRSDKQIAGTTERGPGALIASL----------NIVSK---ATGTMGAKI-TFDNKEVTLNSEVIILAVKP-HIVPVAL-- 193 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e~Gv~v-~~d~~eav~~ADIVILAVpP-~~v~~VL-- 193 (303)
++|||+|||+|.||.+ ++..+ +++.+ .+.+.|+.. ..++.+++++||+||+|||+ ..++.++
T Consensus 6 ~~~~I~iIG~G~mG~~-~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~ 84 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMG-AARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFG 84 (303)
T ss_dssp -CCEEEEECCSHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC-
T ss_pred CCCeEEEECCCHHHHH-HHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhC
Confidence 3689999999999995 55442 23333 345678876 78889999999999999996 5788888
Q ss_pred -HhhccccCCCCEEEEecCCCcH---HHHHhhCCC-CCceEEEecC--cHHhhhCCc-EEEEeCCCCCHHHHHHHHHHHH
Q psy6714 194 -NDIKPVFNESNLLISVAGGVPI---KNMEQALPK-NSRIIRAMPN--TPALVRQGA-SVFVRGSSASDQDAQTVINLFK 265 (303)
Q Consensus 194 -~eI~~~L~~g~IVVSiaaGV~i---e~L~~~l~~-~~~VVr~mPn--~p~~v~~G~-til~~g~~~~~e~~e~V~~Lfs 265 (303)
+++.+.++++++||++.. ++. ..+.+.+.. +..++. +|. .+.....|. ++++.+ +++..+.++++|+
T Consensus 85 ~~~l~~~l~~g~ivv~~st-~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~ 159 (303)
T 3g0o_A 85 EDGVAHLMKPGSAVMVSST-ISSADAQEIAAALTALNLNMLD-APVSGGAVKAAQGEMTVMASG---SEAAFTRLKPVLD 159 (303)
T ss_dssp -CCCGGGSCTTCEEEECSC-CCHHHHHHHHHHHHTTTCEEEE-CCEESCHHHHHTTCEEEEEEC---CHHHHHHHHHHHH
T ss_pred hhhHHhhCCCCCEEEecCC-CCHHHHHHHHHHHHHcCCeEEe-CCCCCChhhhhcCCeEEEeCC---CHHHHHHHHHHHH
Confidence 788888889999986654 443 334444432 233443 342 233344554 455554 6889999999999
Q ss_pred hcCCc-EEcCC
Q psy6714 266 SVGTC-EEVPE 275 (303)
Q Consensus 266 ~iG~~-v~vdE 275 (303)
.+|.. +.+.+
T Consensus 160 ~~g~~~~~~~~ 170 (303)
T 3g0o_A 160 AVASNVYRISD 170 (303)
T ss_dssp HHEEEEEEEES
T ss_pred HHCCCEEECCC
Confidence 99974 55654
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-11 Score=120.60 Aligned_cols=135 Identities=16% Similarity=0.173 Sum_probs=97.1
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHH---HHhh-----CCCeEecChHHhhc---CCCEEEEeeCCc-cH
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSK---ATGT-----MGAKITFDNKEVTL---NSEVIILAVKPH-IV 189 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e-----~Gv~v~~d~~eav~---~ADIVILAVpP~-~v 189 (303)
+|||||||+|.||.. ++..+ ++..+ .+.+ .|+..+.++.++++ ++|+||+|||+. .+
T Consensus 2 ~m~IgvIG~G~mG~~-lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v 80 (482)
T 2pgd_A 2 QADIALIGLAVMGQN-LILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAV 80 (482)
T ss_dssp CBSEEEECCSHHHHH-HHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHH
T ss_pred CCeEEEEChHHHHHH-HHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHH
Confidence 378999999999994 55442 22222 3444 67888888888874 899999999985 89
Q ss_pred HHHHHhhccccCCCCEEEEecCCCcH--HHHHhhCCC-CCceEEEecCc--HHhhhCCcEEEEeCCCCCHHHHHHHHHHH
Q psy6714 190 PVALNDIKPVFNESNLLISVAGGVPI--KNMEQALPK-NSRIIRAMPNT--PALVRQGASVFVRGSSASDQDAQTVINLF 264 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSiaaGV~i--e~L~~~l~~-~~~VVr~mPn~--p~~v~~G~til~~g~~~~~e~~e~V~~Lf 264 (303)
.++++++.++++++++||++.++... ..+.+.+.. +..++ .+|.. +...+.|.++++.+ +++..+.++++|
T Consensus 81 ~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v-~~pv~g~~~~a~~g~~i~~gg---~~e~~~~v~~ll 156 (482)
T 2pgd_A 81 DNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFV-GSGVSGGEDGARYGPSLMPGG---NKEAWPHIKAIF 156 (482)
T ss_dssp HHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE-EEEEESHHHHHHHCCEEEEEE---CTTTHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEe-CCCCCCChhhhccCCeEEeCC---CHHHHHHHHHHH
Confidence 99999999889889999998888864 345554432 23444 34543 33445666665555 466789999999
Q ss_pred HhcCCcE
Q psy6714 265 KSVGTCE 271 (303)
Q Consensus 265 s~iG~~v 271 (303)
+.+|..+
T Consensus 157 ~~~g~~v 163 (482)
T 2pgd_A 157 QGIAAKV 163 (482)
T ss_dssp HHHSCBC
T ss_pred HHhhhhc
Confidence 9999764
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.5e-12 Score=117.62 Aligned_cols=155 Identities=12% Similarity=0.117 Sum_probs=101.5
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh---------hcH---HHHhhCCCeEecCh----------HHhhcCCCEEEEeeCCcc
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN---------IVS---KATGTMGAKITFDN----------KEVTLNSEVIILAVKPHI 188 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~---------r~~---e~l~e~Gv~v~~d~----------~eav~~ADIVILAVpP~~ 188 (303)
|+|||+|||+|.||+ .++..+. +.. +.+++.|+.+..+. .+.+..+|+||||||+++
T Consensus 1 M~mkI~IiGaGa~G~-~~a~~L~~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~~ 79 (307)
T 3ego_A 1 MSLKIGIIGGGSVGL-LCAYYLSLYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQHQ 79 (307)
T ss_dssp -CCEEEEECCSHHHH-HHHHHHHTTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGGG
T ss_pred CCCEEEEECCCHHHH-HHHHHHhcCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHHH
Confidence 468999999999999 5654432 112 23455676553211 245678999999999999
Q ss_pred HHHHHHhhccccCCCCEEEEecCCCcHH-HHHhhCCCCCceEEEecCcHHhh---------hCCcEEEEeCCCCCHHHHH
Q psy6714 189 VPVALNDIKPVFNESNLLISVAGGVPIK-NMEQALPKNSRIIRAMPNTPALV---------RQGASVFVRGSSASDQDAQ 258 (303)
Q Consensus 189 v~~VL~eI~~~L~~g~IVVSiaaGV~ie-~L~~~l~~~~~VVr~mPn~p~~v---------~~G~til~~g~~~~~e~~e 258 (303)
+.++++++++. .+++ |||+++|+..+ .+++.++. .+++..+..+.+.. +.|.+.+-..+. ..+..+
T Consensus 80 ~~~~l~~l~~~-~~~~-ivs~~nGi~~~e~l~~~~~~-~~vl~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~-~~~~~~ 155 (307)
T 3ego_A 80 LQSVFSSLERI-GKTN-ILFLQNGMGHIHDLKDWHVG-HSIYVGIVEHGAVRKSDTAVDHTGLGAIKWSAFDD-AEPDRL 155 (307)
T ss_dssp HHHHHHHTTSS-CCCE-EEECCSSSHHHHHHHTCCCS-CEEEEEEECCEEEECSSSEEEEEECCCEEEEECTT-CCGGGG
T ss_pred HHHHHHHhhcC-CCCe-EEEecCCccHHHHHHHhCCC-CcEEEEEEeeceEECCCCEEEEeeeeeEEEEeCCC-CcHHHH
Confidence 99999999875 5666 99999999985 77888774 56766665544322 123222211111 133445
Q ss_pred HHHHHHHhcCCcEEcCCCC-------------chhhhhhccchHH
Q psy6714 259 TVINLFKSVGTCEEVPEYL-------------LDGITGLSGSGPA 290 (303)
Q Consensus 259 ~V~~Lfs~iG~~v~vdE~~-------------~Da~tAlsGsgPA 290 (303)
.+.++|+..|..+.++++. ++.++|+.+|.-+
T Consensus 156 ~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g 200 (307)
T 3ego_A 156 NILFQHNHSDFPIYYETDWYRLLTGKLIVNACINPLTALLQVKNG 200 (307)
T ss_dssp TTTTSSCCTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHhhhCCCCcEechhHHHHHHHHHHHhhhhhHHHHHhcCCcc
Confidence 5666777778777776654 5777888776533
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.9e-11 Score=110.02 Aligned_cols=137 Identities=10% Similarity=0.060 Sum_probs=92.5
Q ss_pred CCCcEEEEcCChhhHHHHHHHH----------hhcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHHH--
Q psy6714 131 NRSDKQIAGTTERGPGALIASL----------NIVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVALN-- 194 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL~-- 194 (303)
.+|||||||+|.||.+ ++..+ +++.+ .+.+.|+....++.+++++||+||+|||.. ++++++.
T Consensus 8 ~~~~IgiIG~G~mG~~-~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~ 86 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTI-MAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLGMP 86 (306)
T ss_dssp CSCSEEEECCSHHHHH-HHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHTST
T ss_pred CCCeEEEECCCHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhccc
Confidence 4689999999999995 55442 23333 345668888889999999999999999955 5888886
Q ss_pred hhccccCCCCEEEEecCCCc--HHHHHhhCC-CCCceEEEecC---cHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcC
Q psy6714 195 DIKPVFNESNLLISVAGGVP--IKNMEQALP-KNSRIIRAMPN---TPALVRQGASVFVRGSSASDQDAQTVINLFKSVG 268 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV~--ie~L~~~l~-~~~~VVr~mPn---~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG 268 (303)
.+.. +.++++||++..... ...+.+.+. .+..++.. |. .+.....+.++++.+ +++.++.++++|+.+|
T Consensus 87 ~l~~-~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vda-pv~g~~~~~~~~~~~i~~gg---~~~~~~~~~~ll~~lg 161 (306)
T 3l6d_A 87 GVAR-ALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKG-MIVAYPRNVGHRESHSIHTG---DREAFEQHRALLEGLA 161 (306)
T ss_dssp THHH-HTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEE-EEESCGGGTTCTTCEEEEEE---CHHHHHHHHHHHHTTC
T ss_pred chhh-ccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEec-ccccCcccccCCceEEEEcC---CHHHHHHHHHHHHHhc
Confidence 6654 458888886643222 234444432 23445543 22 122222345666766 6889999999999996
Q ss_pred C-cEEc
Q psy6714 269 T-CEEV 273 (303)
Q Consensus 269 ~-~v~v 273 (303)
. ++++
T Consensus 162 ~~~~~~ 167 (306)
T 3l6d_A 162 GHTVFL 167 (306)
T ss_dssp SEEEEC
T ss_pred CCEEEe
Confidence 4 6677
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-10 Score=115.00 Aligned_cols=133 Identities=14% Similarity=0.164 Sum_probs=94.3
Q ss_pred CcEEEEcCChhhHHHHHHHH----------hhcHHH---Hh-hCC-------CeEecChHHhhc---CCCEEEEeeCCc-
Q psy6714 133 SDKQIAGTTERGPGALIASL----------NIVSKA---TG-TMG-------AKITFDNKEVTL---NSEVIILAVKPH- 187 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al----------~r~~e~---l~-e~G-------v~v~~d~~eav~---~ADIVILAVpP~- 187 (303)
|||||||+|.||.. ++..+ ++..++ +. +.| +..+.++.++++ ++|+||+|||+.
T Consensus 2 MkIgVIG~G~mG~~-lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~ 80 (478)
T 1pgj_A 2 MDVGVVGLGVMGAN-LALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGA 80 (478)
T ss_dssp BSEEEECCSHHHHH-HHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSH
T ss_pred CEEEEEChHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChH
Confidence 78999999999994 55442 222232 33 336 666778888876 499999999985
Q ss_pred cHHHHHHhhccccCCCCEEEEecCCCcH--HHHHhhCCC-CCceEEEecCc--HHhhhCCcEEEEeCCCCCHHHHHHHHH
Q psy6714 188 IVPVALNDIKPVFNESNLLISVAGGVPI--KNMEQALPK-NSRIIRAMPNT--PALVRQGASVFVRGSSASDQDAQTVIN 262 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVVSiaaGV~i--e~L~~~l~~-~~~VVr~mPn~--p~~v~~G~til~~g~~~~~e~~e~V~~ 262 (303)
.++++++++.+.++++++||++.+|... ..+.+.+.. +..++. +|.. +.....|.++++.+ +++..+.+++
T Consensus 81 ~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~-~pv~gg~~~a~~g~~i~~gg---~~~~~~~v~~ 156 (478)
T 1pgj_A 81 ATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLG-MGISGGEEGARKGPAFFPGG---TLSVWEEIRP 156 (478)
T ss_dssp HHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEE-EEEESHHHHHHHCCEEEEEE---CHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEE-eeccCCHHHHhcCCeEeccC---CHHHHHHHHH
Confidence 8999999999889889999998888743 456555542 233332 3433 33344566655554 6888999999
Q ss_pred HHHhcCCc
Q psy6714 263 LFKSVGTC 270 (303)
Q Consensus 263 Lfs~iG~~ 270 (303)
+|+.+|..
T Consensus 157 ll~~~g~~ 164 (478)
T 1pgj_A 157 IVEAAAAK 164 (478)
T ss_dssp HHHHHSCB
T ss_pred HHHHhccc
Confidence 99999975
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-10 Score=108.11 Aligned_cols=139 Identities=16% Similarity=0.265 Sum_probs=94.1
Q ss_pred CCCcEEEEcCChhhHHHHHHHH----------hhcHH---HHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHHH--
Q psy6714 131 NRSDKQIAGTTERGPGALIASL----------NIVSK---ATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVALN-- 194 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL~-- 194 (303)
.+|||+|||+|.||.+ ++..+ ++..+ .+.+.|+....++.+++++||+||+||| +..++.++.
T Consensus 30 ~~~~I~iIG~G~mG~~-~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~ 108 (320)
T 4dll_A 30 YARKITFLGTGSMGLP-MARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQ 108 (320)
T ss_dssp CCSEEEEECCTTTHHH-HHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTT
T ss_pred CCCEEEEECccHHHHH-HHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcch
Confidence 4789999999999995 55432 23333 3456699888999999999999999999 578889987
Q ss_pred hhccccCCCCEEEEecCCCcHH---HHHhhCCC-CCceEEEecCcH--HhhhCCc-EEEEeCCCCCHHHHHHHHHHHHhc
Q psy6714 195 DIKPVFNESNLLISVAGGVPIK---NMEQALPK-NSRIIRAMPNTP--ALVRQGA-SVFVRGSSASDQDAQTVINLFKSV 267 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV~ie---~L~~~l~~-~~~VVr~mPn~p--~~v~~G~-til~~g~~~~~e~~e~V~~Lfs~i 267 (303)
++.+.+.++++||++.. +... .+.+.+.. +..++.. |... .....|. ++++.+ +++..+.++++|+.+
T Consensus 109 ~~~~~l~~~~~vi~~st-~~~~~~~~~~~~~~~~g~~~~~~-pv~g~~~~a~~g~l~i~~gg---~~~~~~~~~~ll~~~ 183 (320)
T 4dll_A 109 GVAAAMKPGSLFLDMAS-ITPREARDHAARLGALGIAHLDT-PVSGGTVGAEQGTLVIMAGG---KPADFERSLPLLKVF 183 (320)
T ss_dssp CHHHHCCTTCEEEECSC-CCHHHHHHHHHHHHHTTCEEEEC-CEECHHHHHHHTCEEEEEES---CHHHHHHHHHHHHHH
T ss_pred hHHhhCCCCCEEEecCC-CCHHHHHHHHHHHHHcCCEEEeC-CCcCCHhHHhcCCeeEEeCC---CHHHHHHHHHHHHhc
Confidence 77777888999887654 3332 34333321 2333332 3221 1222343 566665 688999999999999
Q ss_pred CCcEEcCC
Q psy6714 268 GTCEEVPE 275 (303)
Q Consensus 268 G~~v~vdE 275 (303)
+.++++.+
T Consensus 184 ~~~~~~g~ 191 (320)
T 4dll_A 184 GRATHVGP 191 (320)
T ss_dssp EEEEEEES
T ss_pred CCEEEeCC
Confidence 33455644
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.7e-10 Score=105.92 Aligned_cols=134 Identities=14% Similarity=0.215 Sum_probs=90.0
Q ss_pred CCCcEEEEcCChhhHHHHHHHH-----------hhcH----------HHHhhCCCeEec-ChHHhhcCCCEEEEeeCCcc
Q psy6714 131 NRSDKQIAGTTERGPGALIASL-----------NIVS----------KATGTMGAKITF-DNKEVTLNSEVIILAVKPHI 188 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al-----------~r~~----------e~l~e~Gv~v~~-d~~eav~~ADIVILAVpP~~ 188 (303)
++|||||||+|.||.+ ++..+ ++.. +.+.+.|+ .. ++.+++++||+||+|||+..
T Consensus 23 M~m~IgvIG~G~mG~~-lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~ 99 (317)
T 4ezb_A 23 MMTTIAFIGFGEAAQS-IAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAA 99 (317)
T ss_dssp SCCEEEEECCSHHHHH-HHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGG
T ss_pred cCCeEEEECccHHHHH-HHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHH
Confidence 4689999999999995 54432 1222 12335677 56 88899999999999999999
Q ss_pred HHHHHHhhccccCCCCEEEEecCCCcH---HHHHhhCCC-CCceEEE-e--cCcHHhhhCCcEEEEeCCCCCHHHHHHHH
Q psy6714 189 VPVALNDIKPVFNESNLLISVAGGVPI---KNMEQALPK-NSRIIRA-M--PNTPALVRQGASVFVRGSSASDQDAQTVI 261 (303)
Q Consensus 189 v~~VL~eI~~~L~~g~IVVSiaaGV~i---e~L~~~l~~-~~~VVr~-m--Pn~p~~v~~G~til~~g~~~~~e~~e~V~ 261 (303)
..+++.++.+.++++++||++. +++. ..+.+.+.. +..++.. + |. +.. ....++++.++. + +.++
T Consensus 100 ~~~~~~~i~~~l~~~~ivv~~s-t~~p~~~~~~~~~l~~~g~~~~d~pv~g~~-~a~-~g~l~i~vgg~~---~--~~~~ 171 (317)
T 4ezb_A 100 TKAVAASAAPHLSDEAVFIDLN-SVGPDTKALAAGAIATGKGSFVEGAVMARV-PPY-AEKVPILVAGRR---A--VEVA 171 (317)
T ss_dssp HHHHHHHHGGGCCTTCEEEECC-SCCHHHHHHHHHHHHTSSCEEEEEEECSCS-TTT-GGGSEEEEESTT---H--HHHH
T ss_pred HHHHHHHHHhhcCCCCEEEECC-CCCHHHHHHHHHHHHHcCCeEEeccCCCCc-hhh-cCCEEEEEeCCh---H--HHHH
Confidence 9999999999898999998765 4544 344444432 2233321 1 22 221 223567777642 2 7899
Q ss_pred HHHHhcCCc-EEcCC
Q psy6714 262 NLFKSVGTC-EEVPE 275 (303)
Q Consensus 262 ~Lfs~iG~~-v~vdE 275 (303)
++|+.+|.. +.+.+
T Consensus 172 ~ll~~~g~~v~~~g~ 186 (317)
T 4ezb_A 172 ERLNALGMNLEAVGE 186 (317)
T ss_dssp HHHHTTTCEEEEEES
T ss_pred HHHHHhCCCeEEeCC
Confidence 999999975 55554
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.4e-10 Score=105.91 Aligned_cols=140 Identities=14% Similarity=0.170 Sum_probs=99.5
Q ss_pred CCcEEEEcCChhhHHHHHHHH---------hhcHH---HHhhC-------CCeEecChHHhhcCCCEEEEeeCCc-cHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASL---------NIVSK---ATGTM-------GAKITFDNKEVTLNSEVIILAVKPH-IVPV 191 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al---------~r~~e---~l~e~-------Gv~v~~d~~eav~~ADIVILAVpP~-~v~~ 191 (303)
++||||||+|.||.++ +..+ ++..+ ++.+. +++.+.+..+ +++||+||.||+.. .++.
T Consensus 12 ~~~V~vIG~G~MG~~i-A~~laaG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~vk~ 89 (293)
T 1zej_A 12 HMKVFVIGAGLMGRGI-AIAIASKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNTKV 89 (293)
T ss_dssp CCEEEEECCSHHHHHH-HHHHHTTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHHHH
T ss_pred CCeEEEEeeCHHHHHH-HHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHHHH
Confidence 5899999999999964 3322 12222 22333 6777777776 88999999999844 4454
Q ss_pred -HHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCc
Q psy6714 192 -ALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTC 270 (303)
Q Consensus 192 -VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~ 270 (303)
++.++... ++++|+|.++++++..+.+.+....+++..|+.-|... .....++.+...+++.++.+.++++.+|+.
T Consensus 90 ~l~~~l~~~--~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~Pv~~-~~lveiv~g~~t~~~~~~~~~~l~~~lGk~ 166 (293)
T 1zej_A 90 EVLREVERL--TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHV-MPLVEIVISRFTDSKTVAFVEGFLRELGKE 166 (293)
T ss_dssp HHHHHHHTT--CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTT-CCEEEEEECTTCCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHhcC--CCCEEEEECCCcCHHHHHHHhhcccceEeEEecCcccc-CCEEEEECCCCCCHHHHHHHHHHHHHcCCe
Confidence 44666654 88888888888999988886653235777776656432 234556777778999999999999999985
Q ss_pred -EEcCCC
Q psy6714 271 -EEVPEY 276 (303)
Q Consensus 271 -v~vdE~ 276 (303)
+.+.+.
T Consensus 167 ~v~v~d~ 173 (293)
T 1zej_A 167 VVVCKGQ 173 (293)
T ss_dssp EEEEESS
T ss_pred EEEeccc
Confidence 556543
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.6e-10 Score=117.26 Aligned_cols=140 Identities=18% Similarity=0.204 Sum_probs=102.4
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHHH--------------HhhCC-------------CeEecChHHhh
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSKA--------------TGTMG-------------AKITFDNKEVT 174 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e~--------------l~e~G-------------v~v~~d~~eav 174 (303)
.|||+|||+|.||.+ ++..+ ++..+. +.+.| +..+.+. +++
T Consensus 314 i~kV~VIGaG~MG~~-iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~ 391 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGG-IAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDF 391 (715)
T ss_dssp CSSEEEECCHHHHHH-HHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTG
T ss_pred CCEEEEECCChhhHH-HHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHH
Confidence 578999999999995 44321 111111 22334 3455666 678
Q ss_pred cCCCEEEEeeCCcc--HHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCC
Q psy6714 175 LNSEVIILAVKPHI--VPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSA 252 (303)
Q Consensus 175 ~~ADIVILAVpP~~--v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~ 252 (303)
++||+||+||+.+. ..+++.++.+++++++||+|.++++++..|.+.+.....++..|+..|..... ...++.+...
T Consensus 392 ~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~~~~~ig~hf~~P~~~~~-lvevv~g~~t 470 (715)
T 1wdk_A 392 GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMP-LVEVIRGEKS 470 (715)
T ss_dssp GGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCC-EEEEEECSSC
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHHHhcCccceEEEEccCCcccCc-eEEEEECCCC
Confidence 99999999998554 45777888888888999999889999998888775334688888877754433 3445667778
Q ss_pred CHHHHHHHHHHHHhcCCc-EEcC
Q psy6714 253 SDQDAQTVINLFKSVGTC-EEVP 274 (303)
Q Consensus 253 ~~e~~e~V~~Lfs~iG~~-v~vd 274 (303)
+++.++.+.++++.+|+. +.+.
T Consensus 471 ~~e~~~~~~~l~~~lGk~~v~v~ 493 (715)
T 1wdk_A 471 SDLAVATTVAYAKKMGKNPIVVN 493 (715)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHhCCEeEEEc
Confidence 999999999999999985 5554
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3.7e-10 Score=112.48 Aligned_cols=135 Identities=18% Similarity=0.208 Sum_probs=92.0
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHH---HHhhC---C--CeEecChHHhhc---CCCEEEEeeCCc-cH
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSK---ATGTM---G--AKITFDNKEVTL---NSEVIILAVKPH-IV 189 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e~---G--v~v~~d~~eav~---~ADIVILAVpP~-~v 189 (303)
+|+|||||+|.||.+ |+..+ +++.+ .+.+. | +..+.++.++++ ++|+||+|||+. .+
T Consensus 4 ~~kIgiIGlG~MG~~-lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v 82 (484)
T 4gwg_A 4 QADIALIGLAVMGQN-LILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAV 82 (484)
T ss_dssp CBSEEEECCSHHHHH-HHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHH
T ss_pred CCEEEEEChhHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHH
Confidence 689999999999995 55442 22333 23332 3 344678888876 599999999984 89
Q ss_pred HHHHHhhccccCCCCEEEEecCCCcH--HHHHhhCC-CCCceEEEecCc--HHhhhCCcEEEEeCCCCCHHHHHHHHHHH
Q psy6714 190 PVALNDIKPVFNESNLLISVAGGVPI--KNMEQALP-KNSRIIRAMPNT--PALVRQGASVFVRGSSASDQDAQTVINLF 264 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSiaaGV~i--e~L~~~l~-~~~~VVr~mPn~--p~~v~~G~til~~g~~~~~e~~e~V~~Lf 264 (303)
+++++++.++++++++||+..++... ..+.+.+. .+..++.+ |.. +.....|..+++.+ +++..+.++++|
T Consensus 83 ~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~-pVsGg~~gA~~G~~im~GG---~~ea~~~v~pll 158 (484)
T 4gwg_A 83 DDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGS-GVSGGEEGARYGPSLMPGG---NKEAWPHIKTIF 158 (484)
T ss_dssp HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE-EEESHHHHHHHCCEEEEEE---CGGGHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccC-CccCCHHHHhcCCeeecCC---CHHHHHHHHHHH
Confidence 99999999999999999987766543 23333332 23344443 322 22233466666666 578899999999
Q ss_pred HhcCCcE
Q psy6714 265 KSVGTCE 271 (303)
Q Consensus 265 s~iG~~v 271 (303)
+.+|..+
T Consensus 159 ~~ig~~v 165 (484)
T 4gwg_A 159 QGIAAKV 165 (484)
T ss_dssp HHHSCBC
T ss_pred HHhcCcc
Confidence 9999754
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.7e-11 Score=111.86 Aligned_cols=139 Identities=16% Similarity=0.147 Sum_probs=90.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhc----------HHHH---hhCCC---eEecChHHhh-cCCCEEEEeeCCccHHHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNIV----------SKAT---GTMGA---KITFDNKEVT-LNSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r~----------~e~l---~e~Gv---~v~~d~~eav-~~ADIVILAVpP~~v~~VL 193 (303)
|+|||+|||+|.||+ .++..+.+. .+.+ ...|. .+..++.+.+ +++|+||+|||++++.+++
T Consensus 1 M~mkI~iiGaGa~G~-~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~~~~~~l 79 (294)
T 3g17_A 1 MSLSVAIIGPGAVGT-TIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTHQLDAVI 79 (294)
T ss_dssp --CCEEEECCSHHHH-HHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGGGHHHHG
T ss_pred CCcEEEEECCCHHHH-HHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCccCHHHHH
Confidence 358999999999999 566553221 1111 12342 2333455554 7899999999999999999
Q ss_pred HhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHH------hhhCCcEEEEeCCCCCHHHHHHHHHHHHhc
Q psy6714 194 NDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPA------LVRQGASVFVRGSSASDQDAQTVINLFKSV 267 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~------~v~~G~til~~g~~~~~e~~e~V~~Lfs~i 267 (303)
+++++++.++++|||+++|+..+.. ++. ..++..+..+.+ .+..+...+..+ +.+..+.+.++|+..
T Consensus 80 ~~l~~~l~~~~~iv~~~nGi~~~~~---~~~-~~v~~g~~~~~a~~~~pg~v~~~~~~~~~~---~~~~~~~l~~~l~~~ 152 (294)
T 3g17_A 80 PHLTYLAHEDTLIILAQNGYGQLEH---IPF-KNVCQAVVYISGQKKGDVVTHFRDYQLRIQ---DNALTRQFRDLVQDS 152 (294)
T ss_dssp GGHHHHEEEEEEEEECCSSCCCGGG---CCC-SCEEECEEEEEEEEETTEEEEEEEEEEEEE---CSHHHHHHHHHTTTS
T ss_pred HHHHHhhCCCCEEEEeccCcccHhh---CCC-CcEEEEEEEEEEEEcCCCEEEECCCEEecC---ccHHHHHHHHHHHhC
Confidence 9999988888899999999988654 664 344433322211 111111222333 345678899999999
Q ss_pred CCcEEcCCCC
Q psy6714 268 GTCEEVPEYL 277 (303)
Q Consensus 268 G~~v~vdE~~ 277 (303)
|..++++++.
T Consensus 153 ~~~~~~~~di 162 (294)
T 3g17_A 153 QIDIVLEANI 162 (294)
T ss_dssp SCEEEEESSH
T ss_pred CCceEEChHH
Confidence 9877776543
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-09 Score=106.94 Aligned_cols=109 Identities=13% Similarity=0.179 Sum_probs=82.2
Q ss_pred eEecChHHhhcCCCEEEEeeCCcc--HHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCC
Q psy6714 165 KITFDNKEVTLNSEVIILAVKPHI--VPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQG 242 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVpP~~--v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G 242 (303)
.++.+. +.+++||+||+||+.+. ..+++.++.++++++++|+|...++++..|.+.+.....++..|+..|.... .
T Consensus 104 ~i~~~~-~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~la~~~~~~~~~ig~hf~~P~~~~-~ 181 (463)
T 1zcj_A 104 RFSSST-KELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVM-R 181 (463)
T ss_dssp EEESCG-GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTC-C
T ss_pred hhcCCH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHHHHHhcCCcceEEeecCCCcccc-e
Confidence 344555 67889999999998643 3678888888888899999988889888888877533467888776554332 2
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEcCC
Q psy6714 243 ASVFVRGSSASDQDAQTVINLFKSVGTC-EEVPE 275 (303)
Q Consensus 243 ~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~vdE 275 (303)
...++.+...+++.++.+..+++.+|+. +.+.+
T Consensus 182 lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~ 215 (463)
T 1zcj_A 182 LLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGN 215 (463)
T ss_dssp EEEEEECSSCCHHHHHHHHHHHHHTTCEEEEBCC
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEECC
Confidence 3456677778999999999999999985 55543
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-09 Score=112.33 Aligned_cols=140 Identities=20% Similarity=0.210 Sum_probs=98.4
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHHH--------------HhhCC-------------CeEecChHHhh
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSKA--------------TGTMG-------------AKITFDNKEVT 174 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e~--------------l~e~G-------------v~v~~d~~eav 174 (303)
++||+|||+|.||.+ ++..+ +++.+. +.+.| +..+.+. +.+
T Consensus 312 ~~kV~VIGaG~MG~~-iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~ 389 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSG-IATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESF 389 (725)
T ss_dssp CCCEEEECCSHHHHH-HHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGG
T ss_pred CcEEEEEcCCHhhHH-HHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHH
Confidence 678999999999995 44331 111111 11123 3455566 678
Q ss_pred cCCCEEEEeeCCcc--HHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCC
Q psy6714 175 LNSEVIILAVKPHI--VPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSA 252 (303)
Q Consensus 175 ~~ADIVILAVpP~~--v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~ 252 (303)
++||+||+||+.+. ..+++.++.++++++++|+|..+++++..+.+.+.....++..|+--|.... ....++.+...
T Consensus 390 ~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~p~~~iG~hf~~P~~~~-~lvevv~g~~t 468 (725)
T 2wtb_A 390 RDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIM-PLLEIVRTNHT 468 (725)
T ss_dssp TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTCSCTTTEEEEEECSSTTTC-CEEEEEECSSC
T ss_pred CCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHHhcCCCCEEEecCCCCcccC-ceEEEEECCCC
Confidence 99999999998664 4577788888888899988888899998888776432367777764454322 23455677778
Q ss_pred CHHHHHHHHHHHHhcCCc-EEcC
Q psy6714 253 SDQDAQTVINLFKSVGTC-EEVP 274 (303)
Q Consensus 253 ~~e~~e~V~~Lfs~iG~~-v~vd 274 (303)
+++.++.+..+++.+|+. +.+.
T Consensus 469 ~~e~~~~~~~l~~~lGk~~v~v~ 491 (725)
T 2wtb_A 469 SAQVIVDLLDVGKKIKKTPVVVG 491 (725)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHhCCEEEEEC
Confidence 999999999999999985 5554
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.8e-09 Score=103.65 Aligned_cols=114 Identities=16% Similarity=0.104 Sum_probs=82.2
Q ss_pred CCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCCCcH---------HHHHhhCCCCCceEEEec
Q psy6714 163 GAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPI---------KNMEQALPKNSRIIRAMP 233 (303)
Q Consensus 163 Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~i---------e~L~~~l~~~~~VVr~mP 233 (303)
++.++.|..++++++|+||++||.+.+++++++++++++++.+||+++.|+.. +.+.+.++. ...+-..|
T Consensus 104 ~i~~t~dl~~al~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~~-~~~vLsGP 182 (391)
T 4fgw_A 104 NLVANPDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELGI-QCGALSGA 182 (391)
T ss_dssp SEEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHCC-EEEEEECS
T ss_pred CcEEeCCHHHHHhcCCEEEEECChhhhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHHhCc-cceeccCC
Confidence 34567888999999999999999999999999999999999999999999862 345555553 23456789
Q ss_pred CcHHhhhCCc-EEEEeC-CC-------CCHHHHHHHHHHHHhcCCcEEcCCCC
Q psy6714 234 NTPALVRQGA-SVFVRG-SS-------ASDQDAQTVINLFKSVGTCEEVPEYL 277 (303)
Q Consensus 234 n~p~~v~~G~-til~~g-~~-------~~~e~~e~V~~Lfs~iG~~v~vdE~~ 277 (303)
+++.++..+. +.++.+ .+ .++...+.++.+|+.=-..++.+.+.
T Consensus 183 s~A~EVa~~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~Dv 235 (391)
T 4fgw_A 183 NIATEVAQEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDV 235 (391)
T ss_dssp CCHHHHHTTCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCH
T ss_pred chHHHhhcCCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCc
Confidence 9999998874 333322 11 11122466888887655555555443
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.1e-09 Score=103.58 Aligned_cols=138 Identities=13% Similarity=0.075 Sum_probs=85.1
Q ss_pred CcEEEEcCChhhHHHHHHHH----------hhcHHH---Hhh-------------------CC-CeEecChHHhhcCCCE
Q psy6714 133 SDKQIAGTTERGPGALIASL----------NIVSKA---TGT-------------------MG-AKITFDNKEVTLNSEV 179 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al----------~r~~e~---l~e-------------------~G-v~v~~d~~eav~~ADI 179 (303)
|||+|||+|.||.+ ++..+ ++..++ +.+ .| +..+.+..+++++||+
T Consensus 1 mkI~VIG~G~vG~~-~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDv 79 (436)
T 1mv8_A 1 MRISIFGLGYVGAV-CAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDV 79 (436)
T ss_dssp CEEEEECCSTTHHH-HHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSE
T ss_pred CEEEEECCCHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCE
Confidence 79999999999994 44432 122222 222 34 5666788888999999
Q ss_pred EEEeeC-Ccc---------HHHHHHhhccccCC---CCEEEEec-CCCc--HHHHHhhCCC--CC-----ceEEEecCcH
Q psy6714 180 IILAVK-PHI---------VPVALNDIKPVFNE---SNLLISVA-GGVP--IKNMEQALPK--NS-----RIIRAMPNTP 236 (303)
Q Consensus 180 VILAVp-P~~---------v~~VL~eI~~~L~~---g~IVVSia-aGV~--ie~L~~~l~~--~~-----~VVr~mPn~p 236 (303)
||+||| |.. +.++++++.+++++ +++||..+ .++. .+.+.+.+.. +. ..+.+.|...
T Consensus 80 viiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~Pe~~ 159 (436)
T 1mv8_A 80 SFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFL 159 (436)
T ss_dssp EEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCC
T ss_pred EEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEEECcccc
Confidence 999997 454 99999999888887 88888542 1222 3334443321 01 1233334322
Q ss_pred Hh------hhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEc
Q psy6714 237 AL------VRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEV 273 (303)
Q Consensus 237 ~~------v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~v 273 (303)
.. ......++..+. +++..+.+.++|+.+|..+.+
T Consensus 160 ~~G~~~~~~~~~~~iv~G~~--~~~~~~~~~~l~~~~~~~v~~ 200 (436)
T 1mv8_A 160 RESTAIKDYDFPPMTVIGEL--DKQTGDLLEEIYRELDAPIIR 200 (436)
T ss_dssp CTTSHHHHHHSCSCEEEEES--SHHHHHHHHHHHTTSSSCEEE
T ss_pred cccccchhccCCCEEEEEcC--CHHHHHHHHHHHhccCCCEEc
Confidence 11 011112334332 578889999999999986655
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-08 Score=100.32 Aligned_cols=134 Identities=16% Similarity=0.164 Sum_probs=85.8
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHHH---Hhh-------------------C-CCeEecChHHhhcCCC
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSKA---TGT-------------------M-GAKITFDNKEVTLNSE 178 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e~---l~e-------------------~-Gv~v~~d~~eav~~AD 178 (303)
+|||+|||+|.||.+ ++..+ +++.++ +.+ . ++..+++..+++++||
T Consensus 2 ~mkI~VIG~G~vG~~-lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aD 80 (450)
T 3gg2_A 2 SLDIAVVGIGYVGLV-SATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEAD 80 (450)
T ss_dssp CCEEEEECCSHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCS
T ss_pred CCEEEEECcCHHHHH-HHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCC
Confidence 489999999999995 44332 122221 111 2 2566788888899999
Q ss_pred EEEEeeCCc----------cHHHHHHhhccccCCCCEEEEecCCCcH---HHHHhhC----CC---CC-ceEEEecCcHH
Q psy6714 179 VIILAVKPH----------IVPVALNDIKPVFNESNLLISVAGGVPI---KNMEQAL----PK---NS-RIIRAMPNTPA 237 (303)
Q Consensus 179 IVILAVpP~----------~v~~VL~eI~~~L~~g~IVVSiaaGV~i---e~L~~~l----~~---~~-~VVr~mPn~p~ 237 (303)
+||+|||.. .+.+++++|.++++++++||..+ .+.. +.+.+.+ +. .. ..+.+-|....
T Consensus 81 vViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe~a~ 159 (450)
T 3gg2_A 81 IIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS-TVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFLK 159 (450)
T ss_dssp EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCCCC
T ss_pred EEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee-eCCCcchHHHHHHHHHhccccCcCcceeEEechhhhc
Confidence 999999865 79999999999998998888554 3443 2332222 10 01 23444455332
Q ss_pred hh------hCCcEEEEeCCCCCHHHHHHHHHHHHhcCC
Q psy6714 238 LV------RQGASVFVRGSSASDQDAQTVINLFKSVGT 269 (303)
Q Consensus 238 ~v------~~G~til~~g~~~~~e~~e~V~~Lfs~iG~ 269 (303)
+. ..-..+++.+. +++..+.++.+|+.++.
T Consensus 160 eG~~~~~~~~p~~ivvG~~--~~~~~~~~~~l~~~~~~ 195 (450)
T 3gg2_A 160 EGNAIDDFMKPDRVVVGVD--SDRARELITSLYKPMLL 195 (450)
T ss_dssp TTSHHHHHHSCSCEEEEES--SHHHHHHHHHHHTTTCC
T ss_pred ccchhhhccCCCEEEEEcC--CHHHHHHHHHHHHHHhc
Confidence 11 11113444443 67889999999999986
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-08 Score=99.66 Aligned_cols=126 Identities=18% Similarity=0.296 Sum_probs=81.9
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH---------hhcHHH---Hhh------------------CCCeEecChHHhhcCCCE
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL---------NIVSKA---TGT------------------MGAKITFDNKEVTLNSEV 179 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al---------~r~~e~---l~e------------------~Gv~v~~d~~eav~~ADI 179 (303)
+.+|||+|||+|.||.+ ++..+ ++..++ +.+ .++..++|..+++++||+
T Consensus 34 ~~~mkIaVIGlG~mG~~-lA~~La~G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~aDv 112 (432)
T 3pid_A 34 SEFMKITISGTGYVGLS-NGVLIAQNHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNADY 112 (432)
T ss_dssp -CCCEEEEECCSHHHHH-HHHHHHTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTCSE
T ss_pred cCCCEEEEECcCHHHHH-HHHHHHcCCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCCCE
Confidence 56799999999999995 44332 122221 111 146677888899999999
Q ss_pred EEEeeCCc-----------cHHHHHHhhccccCCCCEEEEecCCCc---HHHHHhhCCCCCceEEEecCcHHhhhCC---
Q psy6714 180 IILAVKPH-----------IVPVALNDIKPVFNESNLLISVAGGVP---IKNMEQALPKNSRIIRAMPNTPALVRQG--- 242 (303)
Q Consensus 180 VILAVpP~-----------~v~~VL~eI~~~L~~g~IVVSiaaGV~---ie~L~~~l~~~~~VVr~mPn~p~~v~~G--- 242 (303)
||+|||.. .+++++++|.+ ++++++||. .+.+. .+.+.+.+.. ..+.+-|.. .+.|
T Consensus 113 ViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~-~STv~pgtt~~l~~~l~~--~~v~~sPe~---~~~G~A~ 185 (432)
T 3pid_A 113 VIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMII-KSTIPVGFTRDIKERLGI--DNVIFSPEF---LREGRAL 185 (432)
T ss_dssp EEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEE-CSCCCTTHHHHHHHHHTC--CCEEECCCC---CCTTSHH
T ss_pred EEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEE-eCCCChHHHHHHHHHHhh--ccEeecCcc---CCcchhh
Confidence 99999854 58889999988 889998883 33343 4556666653 233343332 2222
Q ss_pred ------cEEEEeCCCCCHHHHHHHHHHHHh
Q psy6714 243 ------ASVFVRGSSASDQDAQTVINLFKS 266 (303)
Q Consensus 243 ------~til~~g~~~~~e~~e~V~~Lfs~ 266 (303)
..+++.+ +++..+.+..+|..
T Consensus 186 ~~~l~p~rIvvG~---~~~~~~~~~~ll~~ 212 (432)
T 3pid_A 186 YDNLHPSRIVIGE---RSARAERFADLLKE 212 (432)
T ss_dssp HHHHSCSCEEESS---CSHHHHHHHHHHHH
T ss_pred hcccCCceEEecC---CHHHHHHHHHHHHh
Confidence 1355554 45667889999987
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.8e-08 Score=99.21 Aligned_cols=139 Identities=9% Similarity=0.164 Sum_probs=83.9
Q ss_pred CCcEEEEcCChhhHHHHHHHH-h-----------hcHHHHhh----------------------CCCeEecChHHhhcCC
Q psy6714 132 RSDKQIAGTTERGPGALIASL-N-----------IVSKATGT----------------------MGAKITFDNKEVTLNS 177 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-~-----------r~~e~l~e----------------------~Gv~v~~d~~eav~~A 177 (303)
+|||+|||+|.||.+ ++..+ + ++.+++.. .++..+++..+++++|
T Consensus 5 ~mkI~VIG~G~mG~~-lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~a 83 (467)
T 2q3e_A 5 IKKICCIGAGYVGGP-TCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEA 83 (467)
T ss_dssp CCEEEEECCSTTHHH-HHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHC
T ss_pred ccEEEEECCCHHHHH-HHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcC
Confidence 689999999999995 43321 1 12222211 3566667888889999
Q ss_pred CEEEEeeC-Ccc--------------HHHHHHhhccccCCCCEEEEecC-CC-cHHHHHhhCCCC----Cc-eEEEecCc
Q psy6714 178 EVIILAVK-PHI--------------VPVALNDIKPVFNESNLLISVAG-GV-PIKNMEQALPKN----SR-IIRAMPNT 235 (303)
Q Consensus 178 DIVILAVp-P~~--------------v~~VL~eI~~~L~~g~IVVSiaa-GV-~ie~L~~~l~~~----~~-VVr~mPn~ 235 (303)
|+||+||| |.. +.++++++.++++++++||..+. ++ +.+.+.+.+... .. .+.+.|.
T Consensus 84 DvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~Pe- 162 (467)
T 2q3e_A 84 DLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPE- 162 (467)
T ss_dssp SEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEECCC-
T ss_pred CEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeCHH-
Confidence 99999996 443 57788888888888888874321 22 233454443211 11 1223333
Q ss_pred HHhhhCCcE---------EEEeCCC--CCHHHHHHHHHHHHhc-CC-cEEcC
Q psy6714 236 PALVRQGAS---------VFVRGSS--ASDQDAQTVINLFKSV-GT-CEEVP 274 (303)
Q Consensus 236 p~~v~~G~t---------il~~g~~--~~~e~~e~V~~Lfs~i-G~-~v~vd 274 (303)
....|.. +++.+.. .+++..+.++++|+.+ |. .+.+.
T Consensus 163 --~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~ 212 (467)
T 2q3e_A 163 --FLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTT 212 (467)
T ss_dssp --CCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEE
T ss_pred --HhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEec
Confidence 2223322 4444422 2577889999999999 74 45553
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.3e-08 Score=100.22 Aligned_cols=150 Identities=7% Similarity=0.119 Sum_probs=98.5
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhh------------cHHHHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHHHh-
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNI------------VSKATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVALND- 195 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r------------~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL~e- 195 (303)
+..++|||||+|+||+ .++..+.. ..+.+.+.|+... +..+++++||+|++|+|+. .+..++.+
T Consensus 140 l~g~~vgIIG~G~IG~-~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i~~~ 217 (529)
T 1ygy_A 140 IFGKTVGVVGLGRIGQ-LVAQRIAAFGAYVVAYDPYVSPARAAQLGIELL-SLDDLLARADFISVHLPKTPETAGLIDKE 217 (529)
T ss_dssp CTTCEEEEECCSHHHH-HHHHHHHTTTCEEEEECTTSCHHHHHHHTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHH
T ss_pred cCCCEEEEEeeCHHHH-HHHHHHHhCCCEEEEECCCCChhHHHhcCcEEc-CHHHHHhcCCEEEECCCCchHHHHHhCHH
Confidence 4468999999999999 57665421 1234456788764 7888999999999999977 77777754
Q ss_pred hccccCCCCEEEEecCCCc--HHHHHhhCCCCCce----EEEecCcHH----hhhCCcEEEEeCCC-CCHHHHHH-----
Q psy6714 196 IKPVFNESNLLISVAGGVP--IKNMEQALPKNSRI----IRAMPNTPA----LVRQGASVFVRGSS-ASDQDAQT----- 259 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~--ie~L~~~l~~~~~V----Vr~mPn~p~----~v~~G~til~~g~~-~~~e~~e~----- 259 (303)
+.+.++++.+||++..|-. ...|.+.+..+ .+ +.+++.+|. .+.....++++... .+.+..+.
T Consensus 218 ~~~~~k~g~ilin~arg~iv~~~aL~~al~~g-~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~~~~~~ 296 (529)
T 1ygy_A 218 ALAKTKPGVIIVNAARGGLVDEAALADAITGG-HVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDV 296 (529)
T ss_dssp HHTTSCTTEEEEECSCTTSBCHHHHHHHHHTS-SEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHHHHHHH
T ss_pred HHhCCCCCCEEEECCCCchhhHHHHHHHHHcC-CccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHHHHHHH
Confidence 5566888999998876543 34566666431 11 223344442 22334567776544 46666553
Q ss_pred HHHHHHhcCC-c----EEcC-CCCchhhh
Q psy6714 260 VINLFKSVGT-C----EEVP-EYLLDGIT 282 (303)
Q Consensus 260 V~~Lfs~iG~-~----v~vd-E~~~Da~t 282 (303)
++.+...++. . +.++ .++||.+.
T Consensus 297 ~~~l~~~l~~~~~~~~v~~~~~~~hd~i~ 325 (529)
T 1ygy_A 297 AESVRLALAGEFVPDAVNVGGGVVNEEVA 325 (529)
T ss_dssp HHHHHHHHTTCCCTTBCSCCSTTSCTTTT
T ss_pred HHHHHHHHcCCCCCcccCCcccccchhhh
Confidence 6677777763 2 5567 68888876
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.67 E-value=6.5e-08 Score=90.11 Aligned_cols=86 Identities=19% Similarity=0.176 Sum_probs=62.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhC-CC--------------eEecChHHhhcCCCEEEEe
Q psy6714 132 RSDKQIAGTTERGPGALIASLN----------IVSK---ATGTM-GA--------------KITFDNKEVTLNSEVIILA 183 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~-Gv--------------~v~~d~~eav~~ADIVILA 183 (303)
+|||+|||+|.||. .++..+. +..+ .+.+. |+ ....+..++++++|+||+|
T Consensus 4 ~mki~iiG~G~~G~-~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~ 82 (359)
T 1bg6_A 4 SKTYAVLGLGNGGH-AFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV 82 (359)
T ss_dssp CCEEEEECCSHHHH-HHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred cCeEEEECCCHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEe
Confidence 47999999999999 4554421 2222 23332 32 2456777888899999999
Q ss_pred eCCccHHHHHHhhccccCCCCEEEEecC-CCcHHHH
Q psy6714 184 VKPHIVPVALNDIKPVFNESNLLISVAG-GVPIKNM 218 (303)
Q Consensus 184 VpP~~v~~VL~eI~~~L~~g~IVVSiaa-GV~ie~L 218 (303)
||+....++++++.+.++++++||++.+ ++....+
T Consensus 83 v~~~~~~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~ 118 (359)
T 1bg6_A 83 VPAIHHASIAANIASYISEGQLIILNPGATGGALEF 118 (359)
T ss_dssp SCGGGHHHHHHHHGGGCCTTCEEEESSCCSSHHHHH
T ss_pred CCchHHHHHHHHHHHhCCCCCEEEEcCCCchHHHHH
Confidence 9999999999999998988999998854 3343333
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=3.9e-08 Score=94.16 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=60.8
Q ss_pred CCcEEEEcCChhhHHHHHHHH-----------h---hcHHH----HhhCC------------C-------eEecChHHhh
Q psy6714 132 RSDKQIAGTTERGPGALIASL-----------N---IVSKA----TGTMG------------A-------KITFDNKEVT 174 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-----------~---r~~e~----l~e~G------------v-------~v~~d~~eav 174 (303)
+|||+|||+|.||+ .++..+ . +..++ +.+.| . .++.++.+++
T Consensus 2 ~mkI~ViGaG~~G~-~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 80 (404)
T 3c7a_A 2 TVKVCVCGGGNGAH-TLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAI 80 (404)
T ss_dssp CEEEEEECCSHHHH-HHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHH
T ss_pred CceEEEECCCHHHH-HHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHh
Confidence 58999999999999 455443 1 22222 22222 1 1445677888
Q ss_pred cCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCCCc
Q psy6714 175 LNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVP 214 (303)
Q Consensus 175 ~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~ 214 (303)
+++|+||+|||++.+.++++++.++++++++||++.++..
T Consensus 81 ~~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~~~~~~G 120 (404)
T 3c7a_A 81 SGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAG 120 (404)
T ss_dssp TTCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEETTCCTT
T ss_pred CCCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEEcCCCcc
Confidence 8999999999999999999999999988999998655444
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=7.8e-08 Score=93.01 Aligned_cols=131 Identities=22% Similarity=0.213 Sum_probs=80.2
Q ss_pred CcEEEEcCChhhHHHHHHHHh---------hcHHH---HhhCCC------------------eEecChHHhhcCCCEEEE
Q psy6714 133 SDKQIAGTTERGPGALIASLN---------IVSKA---TGTMGA------------------KITFDNKEVTLNSEVIIL 182 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~---------r~~e~---l~e~Gv------------------~v~~d~~eav~~ADIVIL 182 (303)
|||+|||+|.||.+ ++..+- +..++ +.+.|. ..+.+..+++++||+||+
T Consensus 1 MkI~VIG~G~vG~~-~A~~La~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii 79 (402)
T 1dlj_A 1 MKIAVAGSGYVGLS-LGVLLSLQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (402)
T ss_dssp CEEEEECCSHHHHH-HHHHHTTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCCHHHHH-HHHHHhCCCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence 78999999999995 554431 22222 222232 455667788889999999
Q ss_pred eeCCc-----------cHHHHHHhhccccCCCCEEEE--ecCCCcHHHHHhhCCCCCceEEEecCcHHhh------hCCc
Q psy6714 183 AVKPH-----------IVPVALNDIKPVFNESNLLIS--VAGGVPIKNMEQALPKNSRIIRAMPNTPALV------RQGA 243 (303)
Q Consensus 183 AVpP~-----------~v~~VL~eI~~~L~~g~IVVS--iaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v------~~G~ 243 (303)
|||+. .+.++++++.+ ++++++||. +...-..+.+.+.++.. . +...|...... ...-
T Consensus 80 avpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~-~-v~~~Pe~~~~G~a~~~~~~~~ 156 (402)
T 1dlj_A 80 ATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD-R-IIFSPEFLRESKALYDNLYPS 156 (402)
T ss_dssp CCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS-C-EEECCCCCCTTSTTHHHHSCS
T ss_pred ecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC-e-EEECCccccCcchhhcccCCC
Confidence 99976 59999999988 888888884 33333456777777643 3 33334321100 0111
Q ss_pred EEEEeCCCCC----HHHHHHHHHHHHhc
Q psy6714 244 SVFVRGSSAS----DQDAQTVINLFKSV 267 (303)
Q Consensus 244 til~~g~~~~----~e~~e~V~~Lfs~i 267 (303)
.++..+.... .+..+.+.++|...
T Consensus 157 riviG~~~~~~~~~~~~~~~~~~~l~~~ 184 (402)
T 1dlj_A 157 RIIVSCEENDSPKVKADAEKFALLLKSA 184 (402)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCcccchhHHHHHHHHHHHhhh
Confidence 1444443211 15567788888763
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.1e-07 Score=94.06 Aligned_cols=140 Identities=14% Similarity=0.136 Sum_probs=82.8
Q ss_pred CCcEEEEcCChhhHHHHHHHH-h-----------hcHHH---Hhh-------------------CCCeEecChHHhhcCC
Q psy6714 132 RSDKQIAGTTERGPGALIASL-N-----------IVSKA---TGT-------------------MGAKITFDNKEVTLNS 177 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-~-----------r~~e~---l~e-------------------~Gv~v~~d~~eav~~A 177 (303)
+|||+|||+|.||.+ ++..+ + ++.++ +.+ .++..+++..+++++|
T Consensus 9 ~mkI~VIG~G~vG~~-~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~a 87 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGP-TCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEA 87 (481)
T ss_dssp CCEEEEECCSTTHHH-HHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHC
T ss_pred CCEEEEECCCHHHHH-HHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcC
Confidence 689999999999995 44322 1 12222 211 1345566777888999
Q ss_pred CEEEEeeC-Cc--------------cHHHHHHhhccccCCCCEEEEecCCCc---HHHHHhhCCC--C----C-ceEEEe
Q psy6714 178 EVIILAVK-PH--------------IVPVALNDIKPVFNESNLLISVAGGVP---IKNMEQALPK--N----S-RIIRAM 232 (303)
Q Consensus 178 DIVILAVp-P~--------------~v~~VL~eI~~~L~~g~IVVSiaaGV~---ie~L~~~l~~--~----~-~VVr~m 232 (303)
|+||+||| |. .+.+++++|.++++++++||..+ .+. .+.+.+.+.. + . -.+...
T Consensus 88 Dvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S-Tv~~gt~~~l~~~l~~~~~~~~~~d~~v~~~ 166 (481)
T 2o3j_A 88 DLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKS-TVPVKAAESIGCILREAQKNNENLKFQVLSN 166 (481)
T ss_dssp SEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHTC----CCEEEEEC
T ss_pred CEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECC-CCCCCHHHHHHHHHHHhhCcCcCCceEEEeC
Confidence 99999996 33 28899999999898898888432 232 2334443321 1 1 124444
Q ss_pred cCcHHhh------hCCcEEEEeCCCC--CHHHHHHHHHHHHhcCC--cEEc
Q psy6714 233 PNTPALV------RQGASVFVRGSSA--SDQDAQTVINLFKSVGT--CEEV 273 (303)
Q Consensus 233 Pn~p~~v------~~G~til~~g~~~--~~e~~e~V~~Lfs~iG~--~v~v 273 (303)
|...... .....+++.+... .++..+.++++|+.+|. .+.+
T Consensus 167 Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 217 (481)
T 2o3j_A 167 PEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIIT 217 (481)
T ss_dssp CCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEE
T ss_pred cccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEe
Confidence 5422111 1111344444321 12577899999999985 4544
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=6.5e-07 Score=84.70 Aligned_cols=108 Identities=14% Similarity=0.107 Sum_probs=84.2
Q ss_pred eEecChHHhhcCCCEEEEeeC-CccH-HHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCC
Q psy6714 165 KITFDNKEVTLNSEVIILAVK-PHIV-PVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQG 242 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVp-P~~v-~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G 242 (303)
..+++..+++++||+||=||+ .-.+ .+++.+|..+.++++||-|-.+++++..|.+.+..-.+++.+|+--|..+- -
T Consensus 76 ~~~~~l~~a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~m-~ 154 (319)
T 3ado_A 76 SSCTNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYYI-P 154 (319)
T ss_dssp EEECCHHHHTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTTC-C
T ss_pred ccccchHhHhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhccCCCcEEEecCCCCcccc-c
Confidence 345677888999999999997 3334 478888988888999988999999999999887643478888876554332 2
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEc
Q psy6714 243 ASVFVRGSSASDQDAQTVINLFKSVGTC-EEV 273 (303)
Q Consensus 243 ~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~v 273 (303)
..=++.+...+++..+.+..+++.+|+. +.+
T Consensus 155 LVEiv~g~~Ts~~~~~~~~~~~~~~gk~pv~v 186 (319)
T 3ado_A 155 LVELVPHPETSPATVDRTHALMRKIGQSPVRV 186 (319)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHhcCCCCCcHHHHHHHHHHHHHhCCccCCc
Confidence 2334677889999999999999999975 444
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.6e-07 Score=91.01 Aligned_cols=135 Identities=15% Similarity=0.185 Sum_probs=85.0
Q ss_pred CCcEEEEcCChhhHHHHHHHH---------hhcHH---HHhh-------------------C-CCeEecChHHhhcCCCE
Q psy6714 132 RSDKQIAGTTERGPGALIASL---------NIVSK---ATGT-------------------M-GAKITFDNKEVTLNSEV 179 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al---------~r~~e---~l~e-------------------~-Gv~v~~d~~eav~~ADI 179 (303)
..+|+|||+|.||.++..... +++.+ .+.+ . ++..++|..+++++||+
T Consensus 8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDv 87 (446)
T 4a7p_A 8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADA 87 (446)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCE
Confidence 457999999999996432221 11111 1111 1 25677888899999999
Q ss_pred EEEeeC-Cc----------cHHHHHHhhccccCCCCEEEEecCCCcH---HHHH----hhCCCCCceEEEecCcHHhhh-
Q psy6714 180 IILAVK-PH----------IVPVALNDIKPVFNESNLLISVAGGVPI---KNME----QALPKNSRIIRAMPNTPALVR- 240 (303)
Q Consensus 180 VILAVp-P~----------~v~~VL~eI~~~L~~g~IVVSiaaGV~i---e~L~----~~l~~~~~VVr~mPn~p~~v~- 240 (303)
||+||| |. .+++++++|.++++++++||..+ ++.. +.+. +..+..--.+.+-|....+..
T Consensus 88 vii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgtt~~l~~~l~e~~~~~d~~v~~~Pe~a~eG~a 166 (446)
T 4a7p_A 88 VFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKS-TVPVGTGDEVERIIAEVAPNSGAKVVSNPEFLREGAA 166 (446)
T ss_dssp EEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECS-CCCTTHHHHHHHHHHHHSTTSCCEEEECCCCCCTTSH
T ss_pred EEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeC-CCCchHHHHHHHHHHHhCCCCCceEEeCcccccccch
Confidence 999986 43 49999999999999999988643 5553 2332 222211123455565432221
Q ss_pred -----CCcEEEEeCCCCCHHHHHHHHHHHHhcCC
Q psy6714 241 -----QGASVFVRGSSASDQDAQTVINLFKSVGT 269 (303)
Q Consensus 241 -----~G~til~~g~~~~~e~~e~V~~Lfs~iG~ 269 (303)
.-..++..++ +++..+.++.+|+.++.
T Consensus 167 ~~d~~~p~~ivvG~~--~~~~~~~~~~ly~~~~~ 198 (446)
T 4a7p_A 167 IEDFKRPDRVVVGTE--DEFARQVMREIYRPLSL 198 (446)
T ss_dssp HHHHHSCSCEEEECS--CHHHHHHHHHHHCSCC-
T ss_pred hhhccCCCEEEEeCC--cHHHHHHHHHHHHHHhc
Confidence 1113455542 57888999999999986
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-06 Score=87.00 Aligned_cols=104 Identities=10% Similarity=0.125 Sum_probs=61.5
Q ss_pred eEecChHHhhcCCCEEEEeeCCcc------------HHHHHHhhccccCCCCEEEEecCCCcH---HHHH-----hhCCC
Q psy6714 165 KITFDNKEVTLNSEVIILAVKPHI------------VPVALNDIKPVFNESNLLISVAGGVPI---KNME-----QALPK 224 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVpP~~------------v~~VL~eI~~~L~~g~IVVSiaaGV~i---e~L~-----~~l~~ 224 (303)
..+++ .+++++||+||+|||... +..++++|.++++++++||. .+++.. +.+. +..+.
T Consensus 91 ~~ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~-~STv~pgtt~~v~~~ile~~~g~ 168 (478)
T 3g79_A 91 ECTPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVL-ESTITPGTTEGMAKQILEEESGL 168 (478)
T ss_dssp EEESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEE-CSCCCTTTTTTHHHHHHHHHHCC
T ss_pred EEeCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEE-eCCCChHHHHHHHHHHHHHhcCC
Confidence 44455 778999999999997432 66777889888989998873 334443 2222 22221
Q ss_pred --CCc-eEEEecCcHHhh------hCCcEEEEeCCCCCHHHHHHHHHHHHhc-CC-cEEc
Q psy6714 225 --NSR-IIRAMPNTPALV------RQGASVFVRGSSASDQDAQTVINLFKSV-GT-CEEV 273 (303)
Q Consensus 225 --~~~-VVr~mPn~p~~v------~~G~til~~g~~~~~e~~e~V~~Lfs~i-G~-~v~v 273 (303)
+.. .+-.-|...... ..-..++..+ +++..+.++++|+.+ +. .+.+
T Consensus 169 ~~~~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~---~~~~~~~~~~ly~~~~~~~~~~~ 225 (478)
T 3g79_A 169 KAGEDFALAHAPERVMVGRLLKNIREHDRIVGGI---DEASTKRAVELYSPVLTVGQVIP 225 (478)
T ss_dssp CBTTTBEEEECCCCCCTTSHHHHHHHSCEEEEES---SHHHHHHHHHHHGGGCSSCCEEE
T ss_pred CcCCceeEEeCCccCCccchhhhhcCCcEEEEeC---CHHHHHHHHHHHhhhccCCeEEe
Confidence 011 233334321111 0111344444 677889999999999 65 4444
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=2.7e-07 Score=91.50 Aligned_cols=140 Identities=13% Similarity=0.151 Sum_probs=85.7
Q ss_pred CCCcEEEEcCChhhHHHHHHHH----------hhcHHH---HhhC--------------------CCeEecChHHhhcCC
Q psy6714 131 NRSDKQIAGTTERGPGALIASL----------NIVSKA---TGTM--------------------GAKITFDNKEVTLNS 177 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al----------~r~~e~---l~e~--------------------Gv~v~~d~~eav~~A 177 (303)
+.|||+|||+|.||.+ ++..+ +++.++ +.+. .+..++|..+++++|
T Consensus 7 ~~~~I~VIG~G~vG~~-lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~a 85 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLV-TGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHG 85 (478)
T ss_dssp CCCEEEEECCSHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHC
T ss_pred CCceEEEECcCHHHHH-HHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcC
Confidence 4699999999999995 44332 122221 2111 245667777888999
Q ss_pred CEEEEeeCC----------ccHHHHHHhhccccCCCCEEEEecCCCcH---HHHHhhCCC----C---C-ceEEEecCcH
Q psy6714 178 EVIILAVKP----------HIVPVALNDIKPVFNESNLLISVAGGVPI---KNMEQALPK----N---S-RIIRAMPNTP 236 (303)
Q Consensus 178 DIVILAVpP----------~~v~~VL~eI~~~L~~g~IVVSiaaGV~i---e~L~~~l~~----~---~-~VVr~mPn~p 236 (303)
|+||+|||. ..+++++++|.++++++++||..+ ++.. +.+.+.+.. + . -.+.+.|...
T Consensus 86 DvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~S-Tv~~gt~~~l~~~l~~~~~~g~~~~~~~v~~~Pe~~ 164 (478)
T 2y0c_A 86 DVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKS-TVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFL 164 (478)
T ss_dssp SEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCCC
T ss_pred CEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeC-CcCCCchHHHHHHHHHHhcCCCCCccEEEEEChhhh
Confidence 999999985 899999999999998898887554 6543 223222210 0 1 1234445432
Q ss_pred Hhh------hCCcEEEEeCCCCCH----HHHHHHHHHHHhcCC---cEEcC
Q psy6714 237 ALV------RQGASVFVRGSSASD----QDAQTVINLFKSVGT---CEEVP 274 (303)
Q Consensus 237 ~~v------~~G~til~~g~~~~~----e~~e~V~~Lfs~iG~---~v~vd 274 (303)
... .....++..+. ++ +..+.+.++|+.++. ++.++
T Consensus 165 ~eG~~~~~~~~p~~iviG~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 213 (478)
T 2y0c_A 165 KEGAAVDDFTRPDRIVIGCD--DDVPGERARELMKKLYAPFNRNHERTLYM 213 (478)
T ss_dssp CTTCHHHHHHSCSCEEEECC--SSHHHHHHHHHHHHHTGGGGSSSCCEEEE
T ss_pred cccceeeccCCCCEEEEEEC--CCcccHHHHHHHHHHHHHHhccCCeEEcC
Confidence 211 11113444432 23 678899999998874 45543
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=98.37 E-value=4.1e-07 Score=85.83 Aligned_cols=93 Identities=20% Similarity=0.265 Sum_probs=65.1
Q ss_pred ccCCCcEEEEcCChhhHHHHHHHHh----------hc---HHHHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHH-
Q psy6714 129 RWNRSDKQIAGTTERGPGALIASLN----------IV---SKATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVAL- 193 (303)
Q Consensus 129 ~~~~mkIgIIGlG~MG~~~La~al~----------r~---~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL- 193 (303)
.+..|+|||||+|.||. .++..+. +. .+.+.+.|+... +..+++++||+||+++|+. ....++
T Consensus 152 ~l~g~~vgIIG~G~iG~-~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~ 229 (330)
T 2gcg_A 152 GLTQSTVGIIGLGRIGQ-AIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPATEGLCN 229 (330)
T ss_dssp CCTTCEEEEECCSHHHH-HHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC-CHHHHHHHCSEEEECCCCCTTTTTCBS
T ss_pred CCCCCEEEEECcCHHHH-HHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC-CHHHHHhhCCEEEEeCCCChHHHHhhC
Confidence 35578999999999999 4655432 11 123445677765 7888899999999999864 444444
Q ss_pred HhhccccCCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 194 NDIKPVFNESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
+++...++++.+||++..| ++.+.|.+.+.
T Consensus 230 ~~~~~~mk~gailIn~srg~~v~~~aL~~aL~ 261 (330)
T 2gcg_A 230 KDFFQKMKETAVFINISRGDVVNQDDLYQALA 261 (330)
T ss_dssp HHHHHHSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 3444567788999988877 56666766554
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=98.35 E-value=3.5e-07 Score=87.12 Aligned_cols=94 Identities=11% Similarity=0.085 Sum_probs=66.5
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh-h----------c---HHHHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHH-
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN-I----------V---SKATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVAL- 193 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~-r----------~---~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL- 193 (303)
+..++|||||+|.||. .++..+. . . .+...+.|+....+..+++++||+|++++|.. .+..++
T Consensus 161 l~g~~vgIIG~G~IG~-~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~ 239 (348)
T 2w2k_A 161 PRGHVLGAVGLGAIQK-EIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLID 239 (348)
T ss_dssp STTCEEEEECCSHHHH-HHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBC
T ss_pred CCCCEEEEEEECHHHH-HHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhh
Confidence 4467999999999999 4655443 2 1 12234457776667888899999999999965 355554
Q ss_pred HhhccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 194 NDIKPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
.++...++++.+||++..| ++.+.|.+.+..
T Consensus 240 ~~~l~~mk~gailin~srg~~vd~~aL~~aL~~ 272 (348)
T 2w2k_A 240 EAFFAAMKPGSRIVNTARGPVISQDALIAALKS 272 (348)
T ss_dssp HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred HHHHhcCCCCCEEEECCCCchhCHHHHHHHHHh
Confidence 2344457788899988877 666778777754
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=5.4e-09 Score=98.13 Aligned_cols=151 Identities=13% Similarity=0.037 Sum_probs=80.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcHH-------------HHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhcc
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVSK-------------ATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKP 198 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~e-------------~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~ 198 (303)
++||+|||+|+||.. ++..+.+... .+. .|+....|..+++.++|+||+|+|++...+.+...
T Consensus 3 ~irV~IiG~G~mG~~-~~~~l~~~~~~elvav~d~~~~~~~~-~gv~~~~d~~~ll~~~DvViiatp~~~h~~~~~~a-- 78 (320)
T 1f06_A 3 NIRVAIVGYGNLGRS-VEKLIAKQPDMDLVGIFSRRATLDTK-TPVFDVADVDKHADDVDVLFLCMGSATDIPEQAPK-- 78 (320)
T ss_dssp CEEEEEECCSHHHHH-HHHHHTTCSSEEEEEEEESSSCCSSS-SCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHHHH--
T ss_pred CCEEEEEeecHHHHH-HHHHHhcCCCCEEEEEEcCCHHHhhc-CCCceeCCHHHHhcCCCEEEEcCCcHHHHHHHHHH--
Confidence 579999999999994 5544332210 011 35555667777777899999999988544443322
Q ss_pred ccCCCC-EEEEecCCCcHHHH----HhhCCCCCceE----EEecCcH----------HhhhCCcEEEEeCCCCC-HHHHH
Q psy6714 199 VFNESN-LLISVAGGVPIKNM----EQALPKNSRII----RAMPNTP----------ALVRQGASVFVRGSSAS-DQDAQ 258 (303)
Q Consensus 199 ~L~~g~-IVVSiaaGV~ie~L----~~~l~~~~~VV----r~mPn~p----------~~v~~G~til~~g~~~~-~e~~e 258 (303)
+..++ +|++...+++.+.+ .+....+..+. ++.|... ..++.+.+.+..+.+.. ....+
T Consensus 79 -l~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~~v~v~~~~~~p~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~ 157 (320)
T 1f06_A 79 -FAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTGWDPGMFSINRVYAAAVLAEHQQHTFWGPGLSQGHSDALR 157 (320)
T ss_dssp -HTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCEEECSCSBTTBHHHHHHHHHHHHCSSEEEEEEECSEECHHHHHHHH
T ss_pred -HHCCCEEEECCCCcCCHHHHHHHHHHHHHhCCCEEEEecCChHHHHHHHHHHhhccccccceecccCCCcccccccchh
Confidence 23455 44444445666555 22221111111 2223221 11111122222211111 33445
Q ss_pred HHHHHHHhcCCcEEcCCCCchhhhhhccchHH
Q psy6714 259 TVINLFKSVGTCEEVPEYLLDGITGLSGSGPA 290 (303)
Q Consensus 259 ~V~~Lfs~iG~~v~vdE~~~Da~tAlsGsgPA 290 (303)
.+..++..+|..+++ |+.+|.++ ++++|+
T Consensus 158 ~~~gi~~a~g~~i~~-e~~ld~v~--~~~~p~ 186 (320)
T 1f06_A 158 RIPGVQKAVQYTLPS-EDALEKAR--RGEAGD 186 (320)
T ss_dssp TSTTCSEEEEEEEEC-HHHHHHHH--HTCCTT
T ss_pred hcCchhhhhhcccCc-hHHHHHHh--ccCCCc
Confidence 555666666666666 77888876 788888
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=4.1e-07 Score=85.70 Aligned_cols=93 Identities=14% Similarity=0.099 Sum_probs=65.7
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH----------hh-cH--HHHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHH-H
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL----------NI-VS--KATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVAL-N 194 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al----------~r-~~--e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL-~ 194 (303)
+..++|||||+|.||. .++..+ ++ .. +...+.|+....+..+++++||+|++++|.. ....++ +
T Consensus 144 l~g~~vgIIG~G~IG~-~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~ 222 (320)
T 1gdh_A 144 LDNKTLGIYGFGSIGQ-ALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNK 222 (320)
T ss_dssp CTTCEEEEECCSHHHH-HHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSH
T ss_pred CCCCEEEEECcCHHHH-HHHHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCH
Confidence 4568999999999999 566543 22 22 2234568876557888999999999999854 355554 3
Q ss_pred hhccccCCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 195 DIKPVFNESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
++...++++.+||++..| ++.+.|.+.+.
T Consensus 223 ~~l~~mk~gailIn~arg~~vd~~aL~~aL~ 253 (320)
T 1gdh_A 223 ATIKSLPQGAIVVNTARGDLVDNELVVAALE 253 (320)
T ss_dssp HHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 344567789999988776 56667777664
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=3.9e-07 Score=86.49 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=63.1
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcHH--------HHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHH-Hhhccc
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIVSK--------ATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVAL-NDIKPV 199 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~~e--------~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL-~eI~~~ 199 (303)
+..|+|||||+|.||. .++..+....- .-...|+....+..+++++||+|+++||+. ....++ +++...
T Consensus 162 l~g~~vgIIG~G~iG~-~vA~~l~~~G~~V~~~dr~~~~~~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~ 240 (333)
T 3ba1_A 162 FSGKRVGIIGLGRIGL-AVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDA 240 (333)
T ss_dssp CTTCCEEEECCSHHHH-HHHHHHHTTTCCEEEECSSCCTTCCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHH
T ss_pred cCCCEEEEECCCHHHH-HHHHHHHHCCCEEEEECCCchhccCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhc
Confidence 4578999999999999 46655432110 001236665678888999999999999975 455555 234445
Q ss_pred cCCCCEEEEecCCCc--HHHHHhhCC
Q psy6714 200 FNESNLLISVAGGVP--IKNMEQALP 223 (303)
Q Consensus 200 L~~g~IVVSiaaGV~--ie~L~~~l~ 223 (303)
++++.+||++..|.. .+.|.+.+.
T Consensus 241 mk~gailIn~srG~~vd~~aL~~aL~ 266 (333)
T 3ba1_A 241 LGPKGVLINIGRGPHVDEPELVSALV 266 (333)
T ss_dssp HCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred CCCCCEEEECCCCchhCHHHHHHHHH
Confidence 678899998887654 356666554
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=9.6e-07 Score=83.47 Aligned_cols=92 Identities=16% Similarity=0.195 Sum_probs=63.2
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------hc--HHHHhhCCCeEecChHHhhcCCCEEEEeeCCcc-HHHHH-Hh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------IV--SKATGTMGAKITFDNKEVTLNSEVIILAVKPHI-VPVAL-ND 195 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r~--~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~-v~~VL-~e 195 (303)
+..|+|||||+|.||. .++..+. +. .+.+.+.|+.. .+..+++++||+||+|+|... +..++ ++
T Consensus 148 l~g~~vgIIG~G~iG~-~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~~~ 225 (334)
T 2dbq_A 148 VYGKTIGIIGLGRIGQ-AIAKRAKGFNMRILYYSRTRKEEVERELNAEF-KPLEDLLRESDFVVLAVPLTRETYHLINEE 225 (334)
T ss_dssp CTTCEEEEECCSHHHH-HHHHHHHHTTCEEEEECSSCCHHHHHHHCCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHH
T ss_pred CCCCEEEEEccCHHHH-HHHHHHHhCCCEEEEECCCcchhhHhhcCccc-CCHHHHHhhCCEEEECCCCChHHHHhhCHH
Confidence 4578999999999999 4655432 11 12234567765 477888999999999998655 55555 34
Q ss_pred hccccCCCCEEEEecCCCc--HHHHHhhCC
Q psy6714 196 IKPVFNESNLLISVAGGVP--IKNMEQALP 223 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~--ie~L~~~l~ 223 (303)
+.+.++++.+||++..|.. .+.|.+.+.
T Consensus 226 ~~~~mk~~ailIn~srg~~v~~~aL~~aL~ 255 (334)
T 2dbq_A 226 RLKLMKKTAILINIARGKVVDTNALVKALK 255 (334)
T ss_dssp HHHHSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred HHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 5556778999998876643 345666553
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.5e-06 Score=80.03 Aligned_cols=93 Identities=18% Similarity=0.175 Sum_probs=62.4
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------hc--HHHHhhCCCeEecChHHhhcCCCEEEEeeCCcc-HHHHH-Hh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------IV--SKATGTMGAKITFDNKEVTLNSEVIILAVKPHI-VPVAL-ND 195 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r~--~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~-v~~VL-~e 195 (303)
+..++|||||+|.||. .++..++ +. ...+.+.|+.. .+..+++++||+|++++|... ...++ ++
T Consensus 140 l~g~~vgIIG~G~IG~-~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~-~~l~ell~~aDvVvl~~P~~~~t~~li~~~ 217 (313)
T 2ekl_A 140 LAGKTIGIVGFGRIGT-KVGIIANAMGMKVLAYDILDIREKAEKINAKA-VSLEELLKNSDVISLHVTVSKDAKPIIDYP 217 (313)
T ss_dssp CTTCEEEEESCSHHHH-HHHHHHHHTTCEEEEECSSCCHHHHHHTTCEE-CCHHHHHHHCSEEEECCCCCTTSCCSBCHH
T ss_pred CCCCEEEEEeeCHHHH-HHHHHHHHCCCEEEEECCCcchhHHHhcCcee-cCHHHHHhhCCEEEEeccCChHHHHhhCHH
Confidence 4568999999999999 4665432 11 12344678775 478889999999999998433 43333 23
Q ss_pred hccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 196 IKPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
....++++.++|.+..| ++.+.|.+.+..
T Consensus 218 ~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~ 248 (313)
T 2ekl_A 218 QFELMKDNVIIVNTSRAVAVNGKALLDYIKK 248 (313)
T ss_dssp HHHHSCTTEEEEESSCGGGBCHHHHHHHHHT
T ss_pred HHhcCCCCCEEEECCCCcccCHHHHHHHHHc
Confidence 33446688899987655 344567776653
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.2e-06 Score=83.55 Aligned_cols=93 Identities=16% Similarity=0.160 Sum_probs=63.9
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhh----------cH--HHHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHH-Hh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNI----------VS--KATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVAL-ND 195 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r----------~~--e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL-~e 195 (303)
+..++|||||+|.||. .++..+.. .. ....+.|+....+..+++++||+|++++|.. ....++ ++
T Consensus 166 l~g~tvGIIG~G~IG~-~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~ 244 (347)
T 1mx3_A 166 IRGETLGIIGLGRVGQ-AVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDF 244 (347)
T ss_dssp CTTCEEEEECCSHHHH-HHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHH
T ss_pred CCCCEEEEEeECHHHH-HHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHH
Confidence 4568999999999999 46654321 11 1223457766668889999999999999864 455554 33
Q ss_pred hccccCCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 196 IKPVFNESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
....++++.+||.+..| ++.+.|.+.+.
T Consensus 245 ~l~~mk~gailIN~arg~~vd~~aL~~aL~ 274 (347)
T 1mx3_A 245 TVKQMRQGAFLVNTARGGLVDEKALAQALK 274 (347)
T ss_dssp HHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred HHhcCCCCCEEEECCCChHHhHHHHHHHHH
Confidence 44457788899988755 44556766654
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.5e-06 Score=81.34 Aligned_cols=95 Identities=13% Similarity=0.136 Sum_probs=52.9
Q ss_pred ccCCCcEEEEcCChhhHHHHHHHHhhcHH--------HHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH-Hhhcc
Q psy6714 129 RWNRSDKQIAGTTERGPGALIASLNIVSK--------ATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL-NDIKP 198 (303)
Q Consensus 129 ~~~~mkIgIIGlG~MG~~~La~al~r~~e--------~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL-~eI~~ 198 (303)
.+..|+|||||+|.||. .++..+....- .-...++....+..+++++||+|++++| ......++ +++..
T Consensus 168 ~l~gktiGIIGlG~IG~-~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~ 246 (340)
T 4dgs_A 168 SPKGKRIGVLGLGQIGR-ALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQ 246 (340)
T ss_dssp CCTTCEEEEECCSHHHH-HHHHHHHTTTCEEEEECSSCCTTSCCEECSSHHHHHHTCSEEEECC----------CHHHHH
T ss_pred cccCCEEEEECCCHHHH-HHHHHHHHCCCEEEEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHh
Confidence 35578999999999999 46655332110 0113355556788899999999999998 45566666 45555
Q ss_pred ccCCCCEEEEecCCCc--HHHHHhhCCC
Q psy6714 199 VFNESNLLISVAGGVP--IKNMEQALPK 224 (303)
Q Consensus 199 ~L~~g~IVVSiaaGV~--ie~L~~~l~~ 224 (303)
.++++.+||.+.-|-- .+.|.+.+..
T Consensus 247 ~mk~gailIN~aRG~vvde~aL~~aL~~ 274 (340)
T 4dgs_A 247 ALGPEGIVVNVARGNVVDEDALIEALKS 274 (340)
T ss_dssp HTTTTCEEEECSCC--------------
T ss_pred cCCCCCEEEECCCCcccCHHHHHHHHHc
Confidence 6788999998875533 3456665543
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.16 E-value=9.7e-07 Score=80.84 Aligned_cols=108 Identities=13% Similarity=0.159 Sum_probs=70.8
Q ss_pred CCCcEEEEcCChhhHHHHHHHH----------hhcHHHH----hhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 131 NRSDKQIAGTTERGPGALIASL----------NIVSKAT----GTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al----------~r~~e~l----~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
..++|+|||+|.||.+ ++..+ ++..+++ .++|+.+..+..++++++|+||+|+|+....++...+
T Consensus 128 ~~~~v~iiGaG~~g~a-ia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i 206 (275)
T 2hk9_A 128 KEKSILVLGAGGASRA-VIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIF 206 (275)
T ss_dssp GGSEEEEECCSHHHHH-HHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTTCCCSS
T ss_pred CCCEEEEECchHHHHH-HHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCCCCCC
Confidence 4578999999999994 44432 2333322 2447666557778889999999999977543221112
Q ss_pred -ccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCc
Q psy6714 197 -KPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGA 243 (303)
Q Consensus 197 -~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~ 243 (303)
...++++++|+++.. .....++.... ..++++|++++.++++.
T Consensus 207 ~~~~l~~g~~viDv~~-~~t~ll~~a~~---~g~~~v~g~~mlv~q~~ 250 (275)
T 2hk9_A 207 NYDLIKKDHVVVDIIY-KETKLLKKAKE---KGAKLLDGLPMLLWQGI 250 (275)
T ss_dssp CGGGCCTTSEEEESSS-SCCHHHHHHHH---TTCEEECSHHHHHHHHH
T ss_pred CHHHcCCCCEEEEcCC-ChHHHHHHHHH---CcCEEECCHHHHHHHHH
Confidence 234678889998776 55444444332 23578899999887764
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=98.12 E-value=3.1e-06 Score=82.21 Aligned_cols=94 Identities=12% Similarity=0.160 Sum_probs=65.2
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------hc---HHHHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHH-H
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------IV---SKATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVAL-N 194 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r~---~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL-~ 194 (303)
+..++|||||+|.||. .++..++ +. .+...+.|+....+..+++++||+|++++|.. ....++ +
T Consensus 189 l~gktvGIIGlG~IG~-~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~ 267 (393)
T 2nac_A 189 LEAMHVGTVAAGRIGL-AVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIND 267 (393)
T ss_dssp CTTCEEEEECCSHHHH-HHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSH
T ss_pred CCCCEEEEEeECHHHH-HHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhhH
Confidence 4568999999999999 4665532 11 12334568876667889999999999999843 445555 3
Q ss_pred hhccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 195 DIKPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
+....++++.+||.+.-| ++.+.|.+.+..
T Consensus 268 ~~l~~mk~gailIN~aRG~~vde~aL~~aL~~ 299 (393)
T 2nac_A 268 ETLKLFKRGAYIVNTARGKLCDRDAVARALES 299 (393)
T ss_dssp HHHTTSCTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred HHHhhCCCCCEEEECCCchHhhHHHHHHHHHc
Confidence 444557789999988755 344567776653
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.9e-06 Score=81.14 Aligned_cols=94 Identities=12% Similarity=0.071 Sum_probs=63.9
Q ss_pred ccCCCcEEEEcCChhhHHHHHHHHh----------hcH--HHHhhCCCeEecChHHhhcCCCEEEEeeCC-ccHHHHH-H
Q psy6714 129 RWNRSDKQIAGTTERGPGALIASLN----------IVS--KATGTMGAKITFDNKEVTLNSEVIILAVKP-HIVPVAL-N 194 (303)
Q Consensus 129 ~~~~mkIgIIGlG~MG~~~La~al~----------r~~--e~l~e~Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL-~ 194 (303)
.+..++|||||+|.||. .++..++ +.. +.+.+.|+....+..+++++||+|++++|. .....++ .
T Consensus 157 ~l~g~tvGIIGlG~IG~-~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~ 235 (352)
T 3gg9_A 157 VLKGQTLGIFGYGKIGQ-LVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITV 235 (352)
T ss_dssp CCTTCEEEEECCSHHHH-HHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCH
T ss_pred cCCCCEEEEEeECHHHH-HHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCH
Confidence 35578999999999999 4665432 111 234567888767899999999999999983 3344443 2
Q ss_pred hhccccCCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 195 DIKPVFNESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
+....++++.+||.+.-| ++.+.|.+.|.
T Consensus 236 ~~l~~mk~gailIN~aRg~~vd~~aL~~aL~ 266 (352)
T 3gg9_A 236 ADLTRMKPTALFVNTSRAELVEENGMVTALN 266 (352)
T ss_dssp HHHTTSCTTCEEEECSCGGGBCTTHHHHHHH
T ss_pred HHHhhCCCCcEEEECCCchhhcHHHHHHHHH
Confidence 344457789999977633 33455655553
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.1e-06 Score=79.15 Aligned_cols=92 Identities=16% Similarity=0.184 Sum_probs=61.7
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------hc--HHHHhhCCCeEecChHHhhcCCCEEEEeeCCcc-HHHHH-Hh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------IV--SKATGTMGAKITFDNKEVTLNSEVIILAVKPHI-VPVAL-ND 195 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r~--~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~-v~~VL-~e 195 (303)
+..++|||||+|.||. .++..++ +. .+.+.+.|+.. .+..+++++||+|++++|... ...++ .+
T Consensus 140 l~g~~vgIiG~G~IG~-~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~-~~l~ell~~aDvV~l~~p~~~~t~~li~~~ 217 (307)
T 1wwk_A 140 LEGKTIGIIGFGRIGY-QVAKIANALGMNILLYDPYPNEERAKEVNGKF-VDLETLLKESDVVTIHVPLVESTYHLINEE 217 (307)
T ss_dssp CTTCEEEEECCSHHHH-HHHHHHHHTTCEEEEECSSCCHHHHHHTTCEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHH
T ss_pred cCCceEEEEccCHHHH-HHHHHHHHCCCEEEEECCCCChhhHhhcCccc-cCHHHHHhhCCEEEEecCCChHHhhhcCHH
Confidence 4568999999999999 5665432 11 12345678765 478889999999999998533 44444 23
Q ss_pred hccccCCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 196 IKPVFNESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
....++++.++|.+.-| ++.+.|.+.+.
T Consensus 218 ~l~~mk~ga~lin~arg~~vd~~aL~~aL~ 247 (307)
T 1wwk_A 218 RLKLMKKTAILINTSRGPVVDTNALVKALK 247 (307)
T ss_dssp HHHHSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred HHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 33456788999987655 34455665553
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.1e-05 Score=79.13 Aligned_cols=133 Identities=18% Similarity=0.183 Sum_probs=76.4
Q ss_pred CcEEEEcCChhhHHHHHHHH---------hhcHHHHh---h-------------------CC-CeEecChHHhhcCCCEE
Q psy6714 133 SDKQIAGTTERGPGALIASL---------NIVSKATG---T-------------------MG-AKITFDNKEVTLNSEVI 180 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al---------~r~~e~l~---e-------------------~G-v~v~~d~~eav~~ADIV 180 (303)
.|+.|||+|.||.+|..... +++.++.. + .| +..+++ +++||+|
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd----~~~aDvv 87 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTT----PEASDVF 87 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESS----CCCCSEE
T ss_pred CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCc----hhhCCEE
Confidence 58999999999996433221 22222221 1 12 233333 4589999
Q ss_pred EEeeC-Cc-----------cHHHHHHhhccccCCCCEEEEecCCCcHH---HHHh----hCCC--CCc-eEEEecCc---
Q psy6714 181 ILAVK-PH-----------IVPVALNDIKPVFNESNLLISVAGGVPIK---NMEQ----ALPK--NSR-IIRAMPNT--- 235 (303)
Q Consensus 181 ILAVp-P~-----------~v~~VL~eI~~~L~~g~IVVSiaaGV~ie---~L~~----~l~~--~~~-VVr~mPn~--- 235 (303)
|+||| |. .+..++++|.++++++++|| ..+++... .+.+ ..+. +.. .+-.-|..
T Consensus 88 ii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV-~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe~~~~ 166 (431)
T 3ojo_A 88 IIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTII-VESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLP 166 (431)
T ss_dssp EECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEE-ECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCCCCCT
T ss_pred EEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEE-EecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCCcCCC
Confidence 99997 43 27788889999999998877 34455542 2222 1111 011 23333422
Q ss_pred --HHhhhCCc-EEEEeCCCCCHHHHHHHHHHHHhcCC-cEEc
Q psy6714 236 --PALVRQGA-SVFVRGSSASDQDAQTVINLFKSVGT-CEEV 273 (303)
Q Consensus 236 --p~~v~~G~-til~~g~~~~~e~~e~V~~Lfs~iG~-~v~v 273 (303)
+....... .++..+ +++..+.++++|+.++. .+.+
T Consensus 167 G~A~~~~~~p~~Iv~G~---~~~~~~~~~~ly~~~~~~~~~~ 205 (431)
T 3ojo_A 167 GKILEELVHNNRIIGGV---TKACIEAGKRVYRTFVQGEMIE 205 (431)
T ss_dssp TSHHHHHHHSCEEEEES---SHHHHHHHHHHHTTTCCSCEEE
T ss_pred cchhhcccCCCEEEEeC---CHHHHHHHHHHHHHHhCCcEEe
Confidence 11111111 344443 68889999999999986 3444
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=98.08 E-value=3.1e-06 Score=80.98 Aligned_cols=93 Identities=16% Similarity=0.223 Sum_probs=64.6
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------hc---HHHHhhCCCeEecChHHhhcCCCEEEEeeCC-ccHHHHH-H
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------IV---SKATGTMGAKITFDNKEVTLNSEVIILAVKP-HIVPVAL-N 194 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r~---~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL-~ 194 (303)
+..|+|||||+|.||. .++..++ +. .+.+.+.|+....+..+++++||+|++++|. .....++ .
T Consensus 162 l~gktvGIIG~G~IG~-~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~ 240 (351)
T 3jtm_A 162 LEGKTIGTVGAGRIGK-LLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNK 240 (351)
T ss_dssp STTCEEEEECCSHHHH-HHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSH
T ss_pred ccCCEEeEEEeCHHHH-HHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcH
Confidence 4578999999999999 5665532 21 2344567887777899999999999999984 3444443 3
Q ss_pred hhccccCCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 195 DIKPVFNESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
+....++++.+||.+.-| ++.+.|.+.|.
T Consensus 241 ~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 271 (351)
T 3jtm_A 241 ELIGKLKKGVLIVNNARGAIMERQAVVDAVE 271 (351)
T ss_dssp HHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHHhcCCCCCEEEECcCchhhCHHHHHHHHH
Confidence 344456788999977633 34566766664
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.8e-05 Score=72.16 Aligned_cols=86 Identities=6% Similarity=0.100 Sum_probs=56.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh------------cHHH----HhhCCCeEecChHHhhc--CCCEEEEeeCCccHHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI------------VSKA----TGTMGAKITFDNKEVTL--NSEVIILAVKPHIVPVA 192 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r------------~~e~----l~e~Gv~v~~d~~eav~--~ADIVILAVpP~~v~~V 192 (303)
+++||||||+|.||. .++..+.. ..++ ..++|+. ..+..++++ ++|+|++|+|+..-.++
T Consensus 2 m~~~vgiiG~G~~g~-~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~ 79 (331)
T 4hkt_A 2 MTVRFGLLGAGRIGK-VHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHADL 79 (331)
T ss_dssp -CEEEEEECCSHHHH-HHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHHH
T ss_pred CceEEEEECCCHHHH-HHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHHH
Confidence 467999999999998 44443321 2222 2356888 788899887 79999999998887777
Q ss_pred HHhhccccCCCCEEEEec-CCCcHHHHHhh
Q psy6714 193 LNDIKPVFNESNLLISVA-GGVPIKNMEQA 221 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSia-aGV~ie~L~~~ 221 (303)
+..... .++-|+.-. -+.+.+..+++
T Consensus 80 ~~~al~---~gk~v~~EKP~~~~~~~~~~l 106 (331)
T 4hkt_A 80 IERFAR---AGKAIFCEKPIDLDAERVRAC 106 (331)
T ss_dssp HHHHHH---TTCEEEECSCSCSSHHHHHHH
T ss_pred HHHHHH---cCCcEEEecCCCCCHHHHHHH
Confidence 765433 445444221 24555554443
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.8e-06 Score=81.67 Aligned_cols=91 Identities=19% Similarity=0.227 Sum_probs=61.7
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhh----------c--HHHHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHHH-h
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNI----------V--SKATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVALN-D 195 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r----------~--~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL~-e 195 (303)
+..++|||||+|.||. .++..+.. . .+...+.|+.. .+..+++++||+|++|+|.. .+..++. +
T Consensus 144 l~g~~vgIIG~G~iG~-~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~-~~l~e~l~~aDiVil~vp~~~~t~~~i~~~ 221 (333)
T 2d0i_A 144 LYGKKVGILGMGAIGK-AIARRLIPFGVKLYYWSRHRKVNVEKELKARY-MDIDELLEKSDIVILALPLTRDTYHIINEE 221 (333)
T ss_dssp STTCEEEEECCSHHHH-HHHHHHGGGTCEEEEECSSCCHHHHHHHTEEE-CCHHHHHHHCSEEEECCCCCTTTTTSBCHH
T ss_pred CCcCEEEEEccCHHHH-HHHHHHHHCCCEEEEECCCcchhhhhhcCcee-cCHHHHHhhCCEEEEcCCCChHHHHHhCHH
Confidence 4578999999999999 56655321 1 12233557765 37778899999999999976 5555553 3
Q ss_pred hccccCCCCEEEEecCCCcH--HHHHhhCC
Q psy6714 196 IKPVFNESNLLISVAGGVPI--KNMEQALP 223 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~i--e~L~~~l~ 223 (303)
+...++++ +||++..|... +.|.+.+.
T Consensus 222 ~~~~mk~g-ilin~srg~~vd~~aL~~aL~ 250 (333)
T 2d0i_A 222 RVKKLEGK-YLVNIGRGALVDEKAVTEAIK 250 (333)
T ss_dssp HHHHTBTC-EEEECSCGGGBCHHHHHHHHH
T ss_pred HHhhCCCC-EEEECCCCcccCHHHHHHHHH
Confidence 34456788 88988766443 34555554
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=98.03 E-value=4.5e-06 Score=80.04 Aligned_cols=93 Identities=15% Similarity=0.220 Sum_probs=64.1
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhh-----------c---HHHHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHH-
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNI-----------V---SKATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVAL- 193 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r-----------~---~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL- 193 (303)
+..++|||||+|.||. .++..+.. . .+.+.+.|+....+..+++++||+|++++|.. ....++
T Consensus 162 l~g~tvgIIG~G~IG~-~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 240 (364)
T 2j6i_A 162 IEGKTIATIGAGRIGY-RVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLIN 240 (364)
T ss_dssp STTCEEEEECCSHHHH-HHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBC
T ss_pred CCCCEEEEECcCHHHH-HHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhC
Confidence 4568999999999999 46654321 1 12344667776567889999999999999864 344444
Q ss_pred HhhccccCCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 194 NDIKPVFNESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
++....++++.+||.+.-| ++.+.|.+.+.
T Consensus 241 ~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~ 272 (364)
T 2j6i_A 241 KELLSKFKKGAWLVNTARGAICVAEDVAAALE 272 (364)
T ss_dssp HHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHHHhhCCCCCEEEECCCCchhCHHHHHHHHH
Confidence 2344457788899988755 45566766664
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.02 E-value=3.6e-05 Score=71.85 Aligned_cols=85 Identities=11% Similarity=0.044 Sum_probs=56.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh------------cHHH----HhhCCCeEecChHHhhc--CCCEEEEeeCCccHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI------------VSKA----TGTMGAKITFDNKEVTL--NSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r------------~~e~----l~e~Gv~v~~d~~eav~--~ADIVILAVpP~~v~~VL 193 (303)
++||||||+|.||.. ++..+.. ..++ ..++|+....+..++++ ++|+|++|+|+....+++
T Consensus 4 ~~rvgiiG~G~~g~~-~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~ 82 (344)
T 3euw_A 4 TLRIALFGAGRIGHV-HAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVDLI 82 (344)
T ss_dssp CEEEEEECCSHHHHH-HHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHHHH
T ss_pred ceEEEEECCcHHHHH-HHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHHHH
Confidence 679999999999984 4444321 2222 23568888899999988 899999999988887777
Q ss_pred HhhccccCCCCEEEEe-cCCCcHHHHHh
Q psy6714 194 NDIKPVFNESNLLISV-AGGVPIKNMEQ 220 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSi-aaGV~ie~L~~ 220 (303)
..... .++-|+.- --+.+.+..++
T Consensus 83 ~~al~---~gk~v~~EKP~~~~~~~~~~ 107 (344)
T 3euw_A 83 TRAVE---RGIPALCEKPIDLDIEMVRA 107 (344)
T ss_dssp HHHHH---TTCCEEECSCSCSCHHHHHH
T ss_pred HHHHH---cCCcEEEECCCCCCHHHHHH
Confidence 65543 34434422 12455554444
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.01 E-value=3.6e-05 Score=71.93 Aligned_cols=87 Identities=9% Similarity=0.118 Sum_probs=56.4
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh------------cHHH----HhhCCC-eEecChHHhhc--CCCEEEEeeCCccHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI------------VSKA----TGTMGA-KITFDNKEVTL--NSEVIILAVKPHIVPV 191 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r------------~~e~----l~e~Gv-~v~~d~~eav~--~ADIVILAVpP~~v~~ 191 (303)
|+|||||||+|.||. .++..+.. ..++ ..++|+ .+..|..++++ ++|+|++|+|+..-.+
T Consensus 1 M~~rvgiIG~G~~g~-~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 79 (344)
T 3ezy_A 1 MSLRIGVIGLGRIGT-IHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTHSE 79 (344)
T ss_dssp -CEEEEEECCSHHHH-HHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHH
T ss_pred CeeEEEEEcCCHHHH-HHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcchHH
Confidence 357999999999999 45544321 2222 235576 47788999887 7999999999888777
Q ss_pred HHHhhccccCCCCEEEEec-CCCcHHHHHhh
Q psy6714 192 ALNDIKPVFNESNLLISVA-GGVPIKNMEQA 221 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSia-aGV~ie~L~~~ 221 (303)
++..... .|+-|+.-. -+++.+..+++
T Consensus 80 ~~~~al~---~gk~v~~EKP~~~~~~e~~~l 107 (344)
T 3ezy_A 80 LVIACAK---AKKHVFCEKPLSLNLADVDRM 107 (344)
T ss_dssp HHHHHHH---TTCEEEEESCSCSCHHHHHHH
T ss_pred HHHHHHh---cCCeEEEECCCCCCHHHHHHH
Confidence 7665432 455444222 24555554443
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=4.4e-05 Score=71.83 Aligned_cols=87 Identities=6% Similarity=0.003 Sum_probs=56.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHh------------hcHHH----HhhCCCeEecChHHhhc--CCCEEEEeeCCccHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLN------------IVSKA----TGTMGAKITFDNKEVTL--NSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~------------r~~e~----l~e~Gv~v~~d~~eav~--~ADIVILAVpP~~v~~VL 193 (303)
++||||||+|.||...++..+. +..++ ..++|+....+.+++++ +.|+|++|+|+..-.+++
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~ 106 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHAEWI 106 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHHHHH
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence 5799999999999722333221 12222 23568887788999886 589999999988877777
Q ss_pred HhhccccCCCCEEEEec-CCCcHHHHHhh
Q psy6714 194 NDIKPVFNESNLLISVA-GGVPIKNMEQA 221 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSia-aGV~ie~L~~~ 221 (303)
..... .|+-|+.-. -+.+.+..+++
T Consensus 107 ~~al~---aGk~Vl~EKP~a~~~~ea~~l 132 (350)
T 3rc1_A 107 DRALR---AGKHVLAEKPLTTDRPQAERL 132 (350)
T ss_dssp HHHHH---TTCEEEEESSSCSSHHHHHHH
T ss_pred HHHHH---CCCcEEEeCCCCCCHHHHHHH
Confidence 65432 455455321 24455555544
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.00 E-value=2e-06 Score=80.23 Aligned_cols=93 Identities=12% Similarity=0.057 Sum_probs=60.0
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcHHH--------HhhCCCeEecChHHhhcCCCEEEEeeCC-ccHHHHH-Hhhccc
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIVSKA--------TGTMGAKITFDNKEVTLNSEVIILAVKP-HIVPVAL-NDIKPV 199 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~~e~--------l~e~Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL-~eI~~~ 199 (303)
+..++|||||+|.||. .++..++...-+ -....+....+..+++++||+|++++|. .....++ .+....
T Consensus 120 l~g~tvGIIGlG~IG~-~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~ 198 (290)
T 3gvx_A 120 LYGKALGILGYGGIGR-RVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLAN 198 (290)
T ss_dssp CTTCEEEEECCSHHHH-HHHHHHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTT
T ss_pred eecchheeeccCchhH-HHHHHHHhhCcEEEEEeccccccccccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhh
Confidence 4568999999999999 466543221100 0011244455788999999999999983 4454444 345556
Q ss_pred cCCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 200 FNESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 200 L~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
++++.+||.+.-| ++.+.|.+.+.
T Consensus 199 mk~gailIN~aRG~~vd~~aL~~aL~ 224 (290)
T 3gvx_A 199 ARKNLTIVNVARADVVSKPDMIGFLK 224 (290)
T ss_dssp CCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred hhcCceEEEeehhcccCCcchhhhhh
Confidence 7789999987633 34455655553
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.00 E-value=7.3e-06 Score=77.82 Aligned_cols=92 Identities=13% Similarity=0.132 Sum_probs=63.0
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------hc--HHHHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHH-Hh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------IV--SKATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVAL-ND 195 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r~--~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL-~e 195 (303)
+..++|||||+|.||. .++..++ +. .+.+.+.|+.. .+..+++++||+|++++|.. ....++ ++
T Consensus 163 l~g~tvgIIGlG~IG~-~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~ 240 (335)
T 2g76_A 163 LNGKTLGILGLGRIGR-EVATRMQSFGMKTIGYDPIISPEVSASFGVQQ-LPLEEIWPLCDFITVHTPLLPSTTGLLNDN 240 (335)
T ss_dssp CTTCEEEEECCSHHHH-HHHHHHHTTTCEEEEECSSSCHHHHHHTTCEE-CCHHHHGGGCSEEEECCCCCTTTTTSBCHH
T ss_pred CCcCEEEEEeECHHHH-HHHHHHHHCCCEEEEECCCcchhhhhhcCcee-CCHHHHHhcCCEEEEecCCCHHHHHhhCHH
Confidence 4568999999999999 5665432 11 12345678764 47888999999999999854 355555 34
Q ss_pred hccccCCCCEEEEecCCC--cHHHHHhhCC
Q psy6714 196 IKPVFNESNLLISVAGGV--PIKNMEQALP 223 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV--~ie~L~~~l~ 223 (303)
+...++++.++|.+.-|- +.+.|.+.+.
T Consensus 241 ~l~~mk~gailIN~arg~vvd~~aL~~aL~ 270 (335)
T 2g76_A 241 TFAQCKKGVRVVNCARGGIVDEGALLRALQ 270 (335)
T ss_dssp HHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred HHhhCCCCcEEEECCCccccCHHHHHHHHH
Confidence 455677888988776543 3445666554
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00013 Score=76.11 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=79.6
Q ss_pred EecChHHhhcCCCEEEEeeC-CccH-HHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCc
Q psy6714 166 ITFDNKEVTLNSEVIILAVK-PHIV-PVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGA 243 (303)
Q Consensus 166 v~~d~~eav~~ADIVILAVp-P~~v-~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~ 243 (303)
.+.+ .+.+.+||+||=||+ .-.+ .+++.+|..+.++++|+-|-.+++++..|.+.+..-.+++.+|.--|...- -.
T Consensus 384 ~~~~-~~~l~~aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~~~~~p~r~ig~HFfnP~~~m-~L 461 (742)
T 3zwc_A 384 FSSS-TKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVM-RL 461 (742)
T ss_dssp EESC-GGGGGSCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEECCSSTTTC-CE
T ss_pred ccCc-HHHHhhCCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHhhcCCccccccccccCCCCCC-ce
Confidence 3344 445789999999996 3334 377888888888999998999999999999877543478888865554322 22
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCCc-EEc
Q psy6714 244 SVFVRGSSASDQDAQTVINLFKSVGTC-EEV 273 (303)
Q Consensus 244 til~~g~~~~~e~~e~V~~Lfs~iG~~-v~v 273 (303)
.=++.+...+++.++.+..+.+.+|+. +.+
T Consensus 462 VEvi~g~~Ts~e~~~~~~~~~~~lgK~pV~v 492 (742)
T 3zwc_A 462 LEVIPSRYSSPTTIATVMSLSKKIGKIGVVV 492 (742)
T ss_dssp EEEEECSSCCHHHHHHHHHHHHHTTCEEEEC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHhCCCCccc
Confidence 334577888999999999999999985 444
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=2.9e-05 Score=76.61 Aligned_cols=137 Identities=12% Similarity=0.177 Sum_probs=98.7
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh-------------------hcHHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHH
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN-------------------IVSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVP 190 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~-------------------r~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~ 190 (303)
++.+||+|||.|.-|.+ =++.++ ...+++.+.|+.+ .+..|+++.+|||++-+|+..-.
T Consensus 35 lkgK~IaVIGyGsQG~A-qAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v-~~~~eA~~~ADvV~~L~PD~~q~ 112 (491)
T 3ulk_A 35 LQGKKVVIVGCGAQGLN-QGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDKQHS 112 (491)
T ss_dssp GTTSEEEEESCSHHHHH-HHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEE-EEHHHHGGGCSEEEECSCGGGHH
T ss_pred HcCCEEEEeCCChHhHH-HHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEe-cCHHHHHHhCCEEEEeCChhhHH
Confidence 45789999999999983 232211 1123456789987 56889999999999999999999
Q ss_pred HHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHh-------hhCCcEEEEeC---CCCCHHHHHHH
Q psy6714 191 VALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPAL-------VRQGASVFVRG---SSASDQDAQTV 260 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~-------v~~G~til~~g---~~~~~e~~e~V 260 (303)
++.++|.|++++|+.++ .+-|..+..-.-..|.+..|+-+-|--|.. -+.|++.++.- .+.+....+..
T Consensus 113 ~vy~~I~p~lk~G~~L~-faHGFnI~~~~i~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~liAVhqeqD~sG~a~~~A 191 (491)
T 3ulk_A 113 DVVRTVQPLMKDGAALG-YSHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEGMAIA 191 (491)
T ss_dssp HHHHHHGGGSCTTCEEE-ESSCHHHHTTCCCCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEEEEECGGGCTTSCHHHHH
T ss_pred HHHHHHHhhCCCCCEEE-ecCcccccccccccCCCcceEEeCCCCCcHHHHHHHHcCCCCceEEEEEeCCCCchhHHHHH
Confidence 99999999999998754 888886642222335567788887776642 24566544432 34456678888
Q ss_pred HHHHHhcCC
Q psy6714 261 INLFKSVGT 269 (303)
Q Consensus 261 ~~Lfs~iG~ 269 (303)
......+|.
T Consensus 192 layA~aiG~ 200 (491)
T 3ulk_A 192 KAWAAATGG 200 (491)
T ss_dssp HHHHHHHTG
T ss_pred HHHHHhcCC
Confidence 899999984
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=1.6e-05 Score=73.78 Aligned_cols=81 Identities=15% Similarity=0.132 Sum_probs=54.5
Q ss_pred CCcEEEEcCChhhHHHHHHHH-h-----------hcHHHH---h-h---------CCCeE-ecChHHhhcCCCEEEEeeC
Q psy6714 132 RSDKQIAGTTERGPGALIASL-N-----------IVSKAT---G-T---------MGAKI-TFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-~-----------r~~e~l---~-e---------~Gv~v-~~d~~eav~~ADIVILAVp 185 (303)
||||+|||+|.||.+ ++..+ . +..+++ . + ..+.+ ..+. +++++||+||+|++
T Consensus 1 m~kI~VIGaG~~G~~-la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~ 78 (309)
T 1hyh_A 1 ARKIGIIGLGNVGAA-VAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLG 78 (309)
T ss_dssp CCEEEEECCSHHHHH-HHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCS
T ss_pred CCEEEEECCCHHHHH-HHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecC
Confidence 589999999999994 54432 1 111111 1 1 12444 4555 77899999999998
Q ss_pred Ccc--------------------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 PHI--------------------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 P~~--------------------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
+.. +.++++.+.++. ++.+||...+++..
T Consensus 79 ~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~ 127 (309)
T 1hyh_A 79 NIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDV 127 (309)
T ss_dssp CGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHH
T ss_pred CcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCcHHH
Confidence 654 578888887765 56677778888776
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.4e-05 Score=76.94 Aligned_cols=93 Identities=16% Similarity=0.130 Sum_probs=63.4
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------hc--HHHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH-Hh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------IV--SKATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL-ND 195 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r~--~e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL-~e 195 (303)
+..++|||||+|.||. .++..++ +. .+.+.+.|+.. .+..+++++||+|++++| ......++ .+
T Consensus 174 l~gktvGIIGlG~IG~-~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~~ 251 (365)
T 4hy3_A 174 IAGSEIGIVGFGDLGK-ALRRVLSGFRARIRVFDPWLPRSMLEENGVEP-ASLEDVLTKSDFIFVVAAVTSENKRFLGAE 251 (365)
T ss_dssp SSSSEEEEECCSHHHH-HHHHHHTTSCCEEEEECSSSCHHHHHHTTCEE-CCHHHHHHSCSEEEECSCSSCC---CCCHH
T ss_pred cCCCEEEEecCCcccH-HHHHhhhhCCCEEEEECCCCCHHHHhhcCeee-CCHHHHHhcCCEEEEcCcCCHHHHhhcCHH
Confidence 4578999999999999 5665532 11 22345678764 578899999999999998 34555555 34
Q ss_pred hccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 196 IKPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
....++++.++|.+.-| ++.+.|.+.|..
T Consensus 252 ~l~~mk~gailIN~aRG~~vde~aL~~aL~~ 282 (365)
T 4hy3_A 252 AFSSMRRGAAFILLSRADVVDFDALMAAVSS 282 (365)
T ss_dssp HHHTSCTTCEEEECSCGGGSCHHHHHHHHHT
T ss_pred HHhcCCCCcEEEECcCCchhCHHHHHHHHHc
Confidence 44557789999977633 455667776653
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=5e-06 Score=78.70 Aligned_cols=92 Identities=17% Similarity=0.217 Sum_probs=62.4
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------hc---HHHHhhCCCeEecChHHhhcCCCEEEEeeCC-ccHHHHH-H
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------IV---SKATGTMGAKITFDNKEVTLNSEVIILAVKP-HIVPVAL-N 194 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r~---~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL-~ 194 (303)
+..++|||||+|.||. .++..++ +. .+...+.|+.. .+..+++++||+|++++|. .....++ .
T Consensus 143 l~g~tvGIIG~G~IG~-~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~ 220 (330)
T 4e5n_A 143 LDNATVGFLGMGAIGL-AMADRLQGWGATLQYHEAKALDTQTEQRLGLRQ-VACSELFASSDFILLALPLNADTLHLVNA 220 (330)
T ss_dssp STTCEEEEECCSHHHH-HHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCH
T ss_pred cCCCEEEEEeeCHHHH-HHHHHHHHCCCEEEEECCCCCcHhHHHhcCcee-CCHHHHHhhCCEEEEcCCCCHHHHHHhCH
Confidence 4578999999999999 5665432 22 22334567754 4788999999999999983 3444444 3
Q ss_pred hhccccCCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 195 DIKPVFNESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
++...++++.+||.+.-| ++.+.|.+.+.
T Consensus 221 ~~l~~mk~gailIN~arg~~vd~~aL~~aL~ 251 (330)
T 4e5n_A 221 ELLALVRPGALLVNPCRGSVVDEAAVLAALE 251 (330)
T ss_dssp HHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHHhhCCCCcEEEECCCCchhCHHHHHHHHH
Confidence 445567789999987643 34456666554
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=3e-06 Score=79.26 Aligned_cols=93 Identities=11% Similarity=0.075 Sum_probs=59.8
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcHHH-------HhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHHH-hhcccc
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIVSKA-------TGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVALN-DIKPVF 200 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~~e~-------l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL~-eI~~~L 200 (303)
+..++|||||+|.||. .++..+....-+ ..+.+.....+..+++++||+|++++|.. ....++. ++...+
T Consensus 122 l~g~~vgIIG~G~IG~-~~A~~l~~~G~~V~~~dr~~~~~~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~m 200 (303)
T 1qp8_A 122 IQGEKVAVLGLGEIGT-RVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALM 200 (303)
T ss_dssp CTTCEEEEESCSTHHH-HHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTS
T ss_pred CCCCEEEEEccCHHHH-HHHHHHHHCCCEEEEECCCccccCcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhC
Confidence 4578999999999999 566543221100 00113333456788999999999999865 4555553 455567
Q ss_pred CCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 201 NESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 201 ~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
+++.++|.+.-| ++.+.|.+.+.
T Consensus 201 k~gailin~srg~~vd~~aL~~aL~ 225 (303)
T 1qp8_A 201 AEDAVFVNVGRAEVLDRDGVLRILK 225 (303)
T ss_dssp CTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred CCCCEEEECCCCcccCHHHHHHHHH
Confidence 789999977654 23345665553
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=7e-05 Score=70.23 Aligned_cols=86 Identities=9% Similarity=0.100 Sum_probs=56.5
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhc-------------HHH----HhhCCCeEecChHHhhc--CCCEEEEeeCCccHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNIV-------------SKA----TGTMGAKITFDNKEVTL--NSEVIILAVKPHIVPV 191 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r~-------------~e~----l~e~Gv~v~~d~~eav~--~ADIVILAVpP~~v~~ 191 (303)
.++||||||+|.||.. ++..+... .++ ..++|+....|.+++++ +.|+|++|+|+..-.+
T Consensus 12 ~~~rvgiiG~G~~g~~-~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 90 (354)
T 3q2i_A 12 RKIRFALVGCGRIANN-HFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLHPT 90 (354)
T ss_dssp SCEEEEEECCSTTHHH-HHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGHHH
T ss_pred CcceEEEEcCcHHHHH-HHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence 3679999999999984 44433221 122 23568888889999886 7999999999888777
Q ss_pred HHHhhccccCCCCEEEEec-CCCcHHHHHh
Q psy6714 192 ALNDIKPVFNESNLLISVA-GGVPIKNMEQ 220 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSia-aGV~ie~L~~ 220 (303)
++..... .|+-|+.-. -+.+.+..++
T Consensus 91 ~~~~al~---~gk~v~~EKP~a~~~~~~~~ 117 (354)
T 3q2i_A 91 QSIECSE---AGFHVMTEKPMATRWEDGLE 117 (354)
T ss_dssp HHHHHHH---TTCEEEECSSSCSSHHHHHH
T ss_pred HHHHHHH---CCCCEEEeCCCcCCHHHHHH
Confidence 7655432 455555321 1344544444
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.90 E-value=6e-05 Score=70.19 Aligned_cols=86 Identities=10% Similarity=0.008 Sum_probs=55.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh------------cHHH----HhhCCC-eEecChHHhhc--CCCEEEEeeCCccHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI------------VSKA----TGTMGA-KITFDNKEVTL--NSEVIILAVKPHIVPVA 192 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r------------~~e~----l~e~Gv-~v~~d~~eav~--~ADIVILAVpP~~v~~V 192 (303)
++||||||+|.||. .++..+.. ..++ ..++|+ .+..|..++++ ++|+|++|+|+..-.++
T Consensus 5 ~~~igiiG~G~~g~-~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~ 83 (330)
T 3e9m_A 5 KIRYGIMSTAQIVP-RFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHYSA 83 (330)
T ss_dssp CEEEEECSCCTTHH-HHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHHHH
T ss_pred eEEEEEECchHHHH-HHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHHHH
Confidence 57999999999998 45544322 1122 235677 56788888887 79999999998887777
Q ss_pred HHhhccccCCCCEEEEec-CCCcHHHHHhh
Q psy6714 193 LNDIKPVFNESNLLISVA-GGVPIKNMEQA 221 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSia-aGV~ie~L~~~ 221 (303)
+..... .|+-|+.-. -+.+.+..+++
T Consensus 84 ~~~al~---~gk~vl~EKP~~~~~~e~~~l 110 (330)
T 3e9m_A 84 AKLALS---QGKPVLLEKPFTLNAAEAEEL 110 (330)
T ss_dssp HHHHHH---TTCCEEECSSCCSSHHHHHHH
T ss_pred HHHHHH---CCCeEEEeCCCCCCHHHHHHH
Confidence 665433 344344221 24555555443
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.90 E-value=1.1e-05 Score=77.03 Aligned_cols=94 Identities=16% Similarity=0.111 Sum_probs=62.4
Q ss_pred ccCCCcEEEEcCChhhHHHHHHHHh----------hcHH-HHhhCCCeEecChHHhhcCCCEEEEeeCC-ccHHHHH-Hh
Q psy6714 129 RWNRSDKQIAGTTERGPGALIASLN----------IVSK-ATGTMGAKITFDNKEVTLNSEVIILAVKP-HIVPVAL-ND 195 (303)
Q Consensus 129 ~~~~mkIgIIGlG~MG~~~La~al~----------r~~e-~l~e~Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL-~e 195 (303)
.+..++|||||+|.||. .++..++ +... .....|+....+..+++++||+|++++|. .....++ ++
T Consensus 170 ~l~gktvGIIGlG~IG~-~vA~~l~~~G~~V~~~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~ 248 (345)
T 4g2n_A 170 GLTGRRLGIFGMGRIGR-AIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHD 248 (345)
T ss_dssp CCTTCEEEEESCSHHHH-HHHHHHHTTTCEEEEECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHH
T ss_pred ccCCCEEEEEEeChhHH-HHHHHHHHCCCEEEEECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHH
Confidence 35578999999999999 4665432 2211 11123777666889999999999999983 3344343 23
Q ss_pred hccccCCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 196 IKPVFNESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
....++++.+||.+.-| ++.+.|.+.|.
T Consensus 249 ~l~~mk~gailIN~aRG~~vde~aL~~aL~ 278 (345)
T 4g2n_A 249 RIAKIPEGAVVINISRGDLINDDALIEALR 278 (345)
T ss_dssp HHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHhhCCCCcEEEECCCCchhCHHHHHHHHH
Confidence 34456788999977633 34566766664
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00011 Score=68.32 Aligned_cols=124 Identities=8% Similarity=0.032 Sum_probs=71.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh------------cHHH----HhhCCCe-EecChHHhhc--CCCEEEEeeCCccHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI------------VSKA----TGTMGAK-ITFDNKEVTL--NSEVIILAVKPHIVPVA 192 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r------------~~e~----l~e~Gv~-v~~d~~eav~--~ADIVILAVpP~~v~~V 192 (303)
++||||||+|.||. .++..+.. ..++ ..++|+. +..+.+++++ +.|+|++|+|+..-.++
T Consensus 5 ~~rigiiG~G~ig~-~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~ 83 (329)
T 3evn_A 5 KVRYGVVSTAKVAP-RFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYKV 83 (329)
T ss_dssp CEEEEEEBCCTTHH-HHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHHHH
T ss_pred ceEEEEEechHHHH-HHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence 57999999999998 45444321 1122 2345764 7788899887 79999999998887777
Q ss_pred HHhhccccCCCCEEEEec-CCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEe-CCCCCHHHHHHHHHHHH--hcC
Q psy6714 193 LNDIKPVFNESNLLISVA-GGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVR-GSSASDQDAQTVINLFK--SVG 268 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSia-aGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~-g~~~~~e~~e~V~~Lfs--~iG 268 (303)
+.... ..|+-|+.-. -+.+.+..+++... .-..|..++.. ..... .....+++++. .+|
T Consensus 84 ~~~al---~aGk~Vl~EKP~a~~~~e~~~l~~~-------------a~~~~~~~~v~~~~r~~-p~~~~~~~~i~~g~iG 146 (329)
T 3evn_A 84 AKAAL---LAGKHVLVEKPFTLTYDQANELFAL-------------AESCNLFLMEAQKSVFI-PMTQVIKKLLASGEIG 146 (329)
T ss_dssp HHHHH---HTTCEEEEESSCCSSHHHHHHHHHH-------------HHHTTCCEEEECSSCSS-HHHHHHHHHHHTTTTC
T ss_pred HHHHH---HCCCeEEEccCCcCCHHHHHHHHHH-------------HHHcCCEEEEEEcccCC-HHHHHHHHHHhCCCCC
Confidence 65543 2455555322 24455555544320 11123222221 11222 34577777887 678
Q ss_pred CcEEc
Q psy6714 269 TCEEV 273 (303)
Q Consensus 269 ~~v~v 273 (303)
....+
T Consensus 147 ~i~~v 151 (329)
T 3evn_A 147 EVISI 151 (329)
T ss_dssp SEEEE
T ss_pred CeEEE
Confidence 75443
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.3e-05 Score=73.96 Aligned_cols=100 Identities=15% Similarity=0.304 Sum_probs=61.2
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh------------hcHHHHh------hC------CCeEe-cChHHhhcCCCEEEEeeC
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN------------IVSKATG------TM------GAKIT-FDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~------------r~~e~l~------e~------Gv~v~-~d~~eav~~ADIVILAVp 185 (303)
++|||+|||+|.||.. ++..+. +..+++. .. ...+. .+..+.+++||+||+|++
T Consensus 6 ~~mkI~IiGaG~vG~~-~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~v~ 84 (319)
T 1lld_A 6 KPTKLAVIGAGAVGST-LAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAG 84 (319)
T ss_dssp -CCEEEEECCSHHHHH-HHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCC
T ss_pred CCCEEEEECCCHHHHH-HHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEECCC
Confidence 4689999999999994 544321 1111111 11 22332 223457889999999996
Q ss_pred Ccc----------------HHHHHHhhccccCCCCEEEEecCCCcHHH-HHh---hCCCCCceEEEec
Q psy6714 186 PHI----------------VPVALNDIKPVFNESNLLISVAGGVPIKN-MEQ---ALPKNSRIIRAMP 233 (303)
Q Consensus 186 P~~----------------v~~VL~eI~~~L~~g~IVVSiaaGV~ie~-L~~---~l~~~~~VVr~mP 233 (303)
... +.++++++.++ .++.+||++.+|+.... +.. .++. .+++....
T Consensus 85 ~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~~~~~~~~~~~~~~-~~vig~~~ 150 (319)
T 1lld_A 85 PRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDIATHVAQKLTGLPE-NQIFGSGT 150 (319)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHHHTCCT-TSEEECTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHHHHHHHHHhcCCCH-HHEeeccc
Confidence 332 33777777774 57888999999998753 332 3553 35665533
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.88 E-value=4.2e-05 Score=70.57 Aligned_cols=125 Identities=14% Similarity=0.132 Sum_probs=70.8
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh------------cHHHHhhC--CCeEecChHHhhc--CCCEEEEeeCCccHHHHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI------------VSKATGTM--GAKITFDNKEVTL--NSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r------------~~e~l~e~--Gv~v~~d~~eav~--~ADIVILAVpP~~v~~VL~ 194 (303)
++|||||||+|.||. .++..+.. ..+++.+. .+....+..++++ ++|+||+|+|+....+++.
T Consensus 9 ~~~~igiIG~G~~g~-~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~ 87 (315)
T 3c1a_A 9 SPVRLALIGAGRWGK-NYIRTIAGLPGAALVRLASSNPDNLALVPPGCVIESDWRSVVSAPEVEAVIIATPPATHAEITL 87 (315)
T ss_dssp CCEEEEEEECTTTTT-THHHHHHHCTTEEEEEEEESCHHHHTTCCTTCEEESSTHHHHTCTTCCEEEEESCGGGHHHHHH
T ss_pred CcceEEEECCcHHHH-HHHHHHHhCCCcEEEEEEeCCHHHHHHHHhhCcccCCHHHHhhCCCCCEEEEeCChHHHHHHHH
Confidence 368999999999998 44444322 22233221 1556678888885 7999999999988877776
Q ss_pred hhccccCCCCEEEEe-cCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEE-eCCCCCHHHHHHHHHHHHhcCCcEE
Q psy6714 195 DIKPVFNESNLLISV-AGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFV-RGSSASDQDAQTVINLFKSVGTCEE 272 (303)
Q Consensus 195 eI~~~L~~g~IVVSi-aaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~-~g~~~~~e~~e~V~~Lfs~iG~~v~ 272 (303)
... ..|+-|+.- --.++.+..+++... .-..|..+++ +.....+ ....++++++.+|....
T Consensus 88 ~al---~~Gk~v~~eKP~~~~~~~~~~l~~~-------------a~~~g~~~~~~~~~r~~p-~~~~~~~~i~~lG~i~~ 150 (315)
T 3c1a_A 88 AAI---ASGKAVLVEKPLTLDLAEAEAVAAA-------------AKATGVMVWVEHTQLFNP-AWEALKADLTSIGPILA 150 (315)
T ss_dssp HHH---HTTCEEEEESSSCSCHHHHHHHHHH-------------HHHHCCCEEEECGGGGCH-HHHHHHHTHHHHCSEEE
T ss_pred HHH---HCCCcEEEcCCCcCCHHHHHHHHHH-------------HHHcCCEEEEeechhcCH-HHHHHHHHHHHcCCeEE
Confidence 643 245544422 123455544443210 0112222222 1111222 34667777778897654
Q ss_pred c
Q psy6714 273 V 273 (303)
Q Consensus 273 v 273 (303)
+
T Consensus 151 v 151 (315)
T 3c1a_A 151 V 151 (315)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.84 E-value=1.1e-05 Score=75.56 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=58.6
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcHHHH-------hhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHHH-hhcccc
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIVSKAT-------GTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVALN-DIKPVF 200 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~~e~l-------~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL~-eI~~~L 200 (303)
+..++|||||+|.||. +++..++...-+. ....+. ..+..+++++||+|++++|.. ....++. +....+
T Consensus 142 l~g~~vgIIG~G~IG~-~~A~~l~~~G~~V~~~d~~~~~~~~~-~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~m 219 (311)
T 2cuk_A 142 LQGLTLGLVGMGRIGQ-AVAKRALAFGMRVVYHARTPKPLPYP-FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAM 219 (311)
T ss_dssp CTTCEEEEECCSHHHH-HHHHHHHHTTCEEEEECSSCCSSSSC-BCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTS
T ss_pred CCCCEEEEEEECHHHH-HHHHHHHHCCCEEEEECCCCcccccc-cCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhC
Confidence 4578999999999999 5665433211000 000011 246778899999999999875 4555552 344467
Q ss_pred CCCCEEEEecCCC--cHHHHHhhCC
Q psy6714 201 NESNLLISVAGGV--PIKNMEQALP 223 (303)
Q Consensus 201 ~~g~IVVSiaaGV--~ie~L~~~l~ 223 (303)
+++.++|.+..|- +.+.|.+.+.
T Consensus 220 k~ga~lin~srg~~vd~~aL~~aL~ 244 (311)
T 2cuk_A 220 KRGAILLNTARGALVDTEALVEALR 244 (311)
T ss_dssp CTTCEEEECSCGGGBCHHHHHHHHT
T ss_pred CCCcEEEECCCCCccCHHHHHHHHh
Confidence 7899999776543 3345666665
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=97.84 E-value=1.1e-05 Score=76.11 Aligned_cols=93 Identities=14% Similarity=0.125 Sum_probs=59.4
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcHHH-------H-hhCCCeEe---cChHHhhcCCCEEEEeeC-CccHHHHH-Hhh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIVSKA-------T-GTMGAKIT---FDNKEVTLNSEVIILAVK-PHIVPVAL-NDI 196 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~~e~-------l-~e~Gv~v~---~d~~eav~~ADIVILAVp-P~~v~~VL-~eI 196 (303)
+..|+|||||+|.||. .++..++...-+ . ...++... .+..+++++||+|++++| ......++ .+.
T Consensus 137 l~g~tvGIiG~G~IG~-~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~ 215 (315)
T 3pp8_A 137 REEFSVGIMGAGVLGA-KVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSEL 215 (315)
T ss_dssp STTCCEEEECCSHHHH-HHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHH
T ss_pred cCCCEEEEEeeCHHHH-HHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHH
Confidence 4578999999999999 466543321100 0 01123221 466788999999999998 44455555 344
Q ss_pred ccccCCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 197 KPVFNESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
...++++.++|.+.-| ++.+.|.+.|.
T Consensus 216 l~~mk~gailIN~aRG~~vd~~aL~~aL~ 244 (315)
T 3pp8_A 216 LDQLPDGAYVLNLARGVHVQEADLLAALD 244 (315)
T ss_dssp HTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HhhCCCCCEEEECCCChhhhHHHHHHHHH
Confidence 5567789999977633 34556666654
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=97.83 E-value=1.4e-05 Score=75.58 Aligned_cols=93 Identities=12% Similarity=0.089 Sum_probs=59.1
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhc----------HHHHhhC-CCeEecChHHhhcCCCEEEEeeCC-ccHHHHH-Hhh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIV----------SKATGTM-GAKITFDNKEVTLNSEVIILAVKP-HIVPVAL-NDI 196 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~----------~e~l~e~-Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL-~eI 196 (303)
+..++|||||+|.||. .++..++.. .+..... +.....+..+++++||+|++++|. .....++ .+.
T Consensus 138 l~g~tvGIIGlG~IG~-~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~ 216 (324)
T 3hg7_A 138 LKGRTLLILGTGSIGQ-HIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASR 216 (324)
T ss_dssp STTCEEEEECCSHHHH-HHHHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTT
T ss_pred cccceEEEEEECHHHH-HHHHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHH
Confidence 4578999999999999 465543221 1111111 111235678899999999999983 3444444 344
Q ss_pred ccccCCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 197 KPVFNESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
...++++.+||.+.-| ++.+.|.+.|.
T Consensus 217 l~~mk~gailIN~aRG~~vde~aL~~aL~ 245 (324)
T 3hg7_A 217 FEHCKPGAILFNVGRGNAINEGDLLTALR 245 (324)
T ss_dssp TTCSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred HhcCCCCcEEEECCCchhhCHHHHHHHHH
Confidence 4567889999987643 34456766664
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00012 Score=68.54 Aligned_cols=86 Identities=6% Similarity=0.020 Sum_probs=56.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh------------cHHH----HhhCCCeEecChHHhh--cCCCEEEEeeCCccHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI------------VSKA----TGTMGAKITFDNKEVT--LNSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r------------~~e~----l~e~Gv~v~~d~~eav--~~ADIVILAVpP~~v~~VL 193 (303)
++||||||+|.||. .++..+.. ..++ ..++|+....+..+++ .+.|+|++|+|+..-.+++
T Consensus 5 ~~~vgiiG~G~~g~-~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~ 83 (354)
T 3db2_A 5 PVGVAAIGLGRWAY-VMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAEVI 83 (354)
T ss_dssp CEEEEEECCSHHHH-HHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHHHH
T ss_pred cceEEEEccCHHHH-HHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHHHH
Confidence 46899999999998 45544322 2222 2356887778889988 5699999999988777776
Q ss_pred HhhccccCCCCEEEEec-CCCcHHHHHhh
Q psy6714 194 NDIKPVFNESNLLISVA-GGVPIKNMEQA 221 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSia-aGV~ie~L~~~ 221 (303)
..... .|+-|+.-. -+.+.+..+++
T Consensus 84 ~~al~---~gk~vl~EKP~~~~~~~~~~l 109 (354)
T 3db2_A 84 EQCAR---SGKHIYVEKPISVSLDHAQRI 109 (354)
T ss_dssp HHHHH---TTCEEEEESSSCSSHHHHHHH
T ss_pred HHHHH---cCCEEEEccCCCCCHHHHHHH
Confidence 55432 455444322 24555555544
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=8.3e-06 Score=77.78 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=58.2
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------hcHHHHhhCCCeEecChHHhhcCCCEEEEeeCC-ccHHHHH-Hhhc
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------IVSKATGTMGAKITFDNKEVTLNSEVIILAVKP-HIVPVAL-NDIK 197 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL-~eI~ 197 (303)
+..++|||||+|.||. .++..++ +..+...+.++.. .+..+++++||+|++++|. .....++ .+..
T Consensus 146 l~gktvgIiGlG~IG~-~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~-~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l 223 (343)
T 2yq5_A 146 IYNLTVGLIGVGHIGS-AVAEIFSAMGAKVIAYDVAYNPEFEPFLTY-TDFDTVLKEADIVSLHTPLFPSTENMIGEKQL 223 (343)
T ss_dssp GGGSEEEEECCSHHHH-HHHHHHHHTTCEEEEECSSCCGGGTTTCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHH
T ss_pred cCCCeEEEEecCHHHH-HHHHHHhhCCCEEEEECCChhhhhhccccc-cCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHH
Confidence 4468999999999999 4665432 1111112233433 4788999999999999983 3333333 2333
Q ss_pred cccCCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 198 PVFNESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 198 ~~L~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
..++++.+||.+.-| ++.+.|.+.|.
T Consensus 224 ~~mk~gailIN~aRg~~vd~~aL~~aL~ 251 (343)
T 2yq5_A 224 KEMKKSAYLINCARGELVDTGALIKALQ 251 (343)
T ss_dssp HHSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred hhCCCCcEEEECCCChhhhHHHHHHHHH
Confidence 456789999977633 34456666553
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=2.3e-05 Score=73.06 Aligned_cols=74 Identities=14% Similarity=0.076 Sum_probs=50.6
Q ss_pred CCCcEEEEcCChhhHHHHHHHH------------hhcHHH---Hh-hCC--CeEecChHHhhcCCCEEEEeeCCccHHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASL------------NIVSKA---TG-TMG--AKITFDNKEVTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al------------~r~~e~---l~-e~G--v~v~~d~~eav~~ADIVILAVpP~~v~~V 192 (303)
..++|+|||+|.||.. ++..+ ++..++ +. ++| +....+..++++++|+||+|+|.. ..+
T Consensus 134 ~~~~igiIG~G~~g~~-~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~--~~v 210 (312)
T 2i99_A 134 SSEVLCILGAGVQAYS-HYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLAT--EPI 210 (312)
T ss_dssp TCCEEEEECCSHHHHH-HHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCS--SCC
T ss_pred CCcEEEEECCcHHHHH-HHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCC--Ccc
Confidence 4678999999999995 33322 122222 22 346 777788889999999999999842 334
Q ss_pred HHhhccccCCCCEEEEe
Q psy6714 193 LNDIKPVFNESNLLISV 209 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSi 209 (303)
+.. +.++++++|+++
T Consensus 211 ~~~--~~l~~g~~vi~~ 225 (312)
T 2i99_A 211 LFG--EWVKPGAHINAV 225 (312)
T ss_dssp BCG--GGSCTTCEEEEC
T ss_pred cCH--HHcCCCcEEEeC
Confidence 322 457788888765
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0001 Score=67.80 Aligned_cols=101 Identities=15% Similarity=0.191 Sum_probs=64.0
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH----------hhcHH---HHhhCCCeEe--cChHHhhcCCCEEEEeeCCccHH-HHH
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL----------NIVSK---ATGTMGAKIT--FDNKEVTLNSEVIILAVKPHIVP-VAL 193 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e~Gv~v~--~d~~eav~~ADIVILAVpP~~v~-~VL 193 (303)
+..++|+|||+|.||. .++..+ ++..+ .+.+.|+... .+..++++++|+||+++|...+. +.+
T Consensus 153 l~g~~v~IiG~G~iG~-~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i~~~~l 231 (293)
T 3d4o_A 153 IHGANVAVLGLGRVGM-SVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPALVVTANVL 231 (293)
T ss_dssp STTCEEEEECCSHHHH-HHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSSCCBCHHHH
T ss_pred CCCCEEEEEeeCHHHH-HHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCChHHhCHHHH
Confidence 4568999999999999 455442 22222 2345687653 45677889999999999876543 333
Q ss_pred HhhccccCCCCEEEEecC---CCcHHHHHhhCCCCCceEEEecCcHHhh
Q psy6714 194 NDIKPVFNESNLLISVAG---GVPIKNMEQALPKNSRIIRAMPNTPALV 239 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaa---GV~ie~L~~~l~~~~~VVr~mPn~p~~v 239 (303)
. .++++.++|.+.- +++.+.. +..+ ..+..+|++|..+
T Consensus 232 ~----~mk~~~~lin~ar~~~~~~~~~a-~~~G---v~~~~~~~l~~~v 272 (293)
T 3d4o_A 232 A----EMPSHTFVIDLASKPGGTDFRYA-EKRG---IKALLVPGLPGIV 272 (293)
T ss_dssp H----HSCTTCEEEECSSTTCSBCHHHH-HHHT---CEEEECCCHHHHH
T ss_pred H----hcCCCCEEEEecCCCCCCCHHHH-HHCC---CEEEECCCCCccc
Confidence 3 3567889998773 3333222 2222 2345679988765
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=97.77 E-value=1.8e-05 Score=74.89 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=58.6
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhc----------HHHHhhCC-CeEecChHHhhcCCCEEEEeeCC-ccHHHHH-Hhh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIV----------SKATGTMG-AKITFDNKEVTLNSEVIILAVKP-HIVPVAL-NDI 196 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~----------~e~l~e~G-v~v~~d~~eav~~ADIVILAVpP-~~v~~VL-~eI 196 (303)
+..++|||||+|.||. .++..++.. .+...... .....+..+++++||+|++++|. .....++ .+.
T Consensus 135 l~gktvGIiGlG~IG~-~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~ 213 (324)
T 3evt_A 135 LTGQQLLIYGTGQIGQ-SLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTEL 213 (324)
T ss_dssp STTCEEEEECCSHHHH-HHHHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHH
T ss_pred ccCCeEEEECcCHHHH-HHHHHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHH
Confidence 4578999999999999 466543221 11111111 11234678899999999999983 3444444 334
Q ss_pred ccccCCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 197 KPVFNESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
...++++.+||.+.-| ++.+.|.+.|.
T Consensus 214 l~~mk~gailIN~aRG~~vd~~aL~~aL~ 242 (324)
T 3evt_A 214 FQQTKQQPMLINIGRGPAVDTTALMTALD 242 (324)
T ss_dssp HHTCCSCCEEEECSCGGGBCHHHHHHHHH
T ss_pred HhcCCCCCEEEEcCCChhhhHHHHHHHHH
Confidence 4457789999977633 45566776664
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=9.4e-05 Score=69.07 Aligned_cols=86 Identities=7% Similarity=0.034 Sum_probs=55.8
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh-h------------cHHH----HhhCC--CeEecChHHhhcC--CCEEEEeeCCccH
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN-I------------VSKA----TGTMG--AKITFDNKEVTLN--SEVIILAVKPHIV 189 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~-r------------~~e~----l~e~G--v~v~~d~~eav~~--ADIVILAVpP~~v 189 (303)
|++||||||+|.||.. ++..+. . ..++ .+++| .....+..+++++ .|+|++|+|+..-
T Consensus 1 M~~rigiIG~G~~g~~-~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h 79 (344)
T 3mz0_A 1 MSLRIGVIGTGAIGKE-HINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAH 79 (344)
T ss_dssp CCEEEEEECCSHHHHH-HHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred CeEEEEEECccHHHHH-HHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhH
Confidence 3579999999999984 444332 1 1122 23567 5778899998875 8999999998887
Q ss_pred HHHHHhhccccCCCCEEEEec-CCCcHHHHHh
Q psy6714 190 PVALNDIKPVFNESNLLISVA-GGVPIKNMEQ 220 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSia-aGV~ie~L~~ 220 (303)
.+++.... ..|+-|+.-. -+.+.+..++
T Consensus 80 ~~~~~~al---~~Gk~vl~EKP~a~~~~e~~~ 108 (344)
T 3mz0_A 80 ESSVLKAI---KAQKYVFCEKPLATTAEGCMR 108 (344)
T ss_dssp HHHHHHHH---HTTCEEEECSCSCSSHHHHHH
T ss_pred HHHHHHHH---HCCCcEEEcCCCCCCHHHHHH
Confidence 77776543 2455455321 1345544443
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00012 Score=67.45 Aligned_cols=103 Identities=16% Similarity=0.163 Sum_probs=64.6
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH----------hhcHH---HHhhCCCeEe--cChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL----------NIVSK---ATGTMGAKIT--FDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e~Gv~v~--~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
+..++|+|||+|.||.. ++..+ ++..+ .+.+.|+... .+..++++++|+||+++|+..+.+-
T Consensus 155 l~g~~v~IiG~G~iG~~-~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i~~~-- 231 (300)
T 2rir_A 155 IHGSQVAVLGLGRTGMT-IARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPSMILNQT-- 231 (300)
T ss_dssp STTSEEEEECCSHHHHH-HHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSSCCBCHH--
T ss_pred CCCCEEEEEcccHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCChhhhCHH--
Confidence 34689999999999994 44432 22222 2335677642 4667888999999999998654321
Q ss_pred hhccccCCCCEEEEecCC---CcHHHHHhhCCCCCceEEEecCcHHhhh
Q psy6714 195 DIKPVFNESNLLISVAGG---VPIKNMEQALPKNSRIIRAMPNTPALVR 240 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaG---V~ie~L~~~l~~~~~VVr~mPn~p~~v~ 240 (303)
....++++.+||.+.-| ++.+.. ...+ ..+..+||+++.+.
T Consensus 232 -~~~~mk~g~~lin~a~g~~~~~~~~a-~~~G---~~~i~~pg~~g~v~ 275 (300)
T 2rir_A 232 -VLSSMTPKTLILDLASRPGGTDFKYA-EKQG---IKALLAPGLPGIVA 275 (300)
T ss_dssp -HHTTSCTTCEEEECSSTTCSBCHHHH-HHHT---CEEEECCCHHHHHC
T ss_pred -HHHhCCCCCEEEEEeCCCCCcCHHHH-HHCC---CEEEECCCCCCcHH
Confidence 22346678899987653 333211 1111 23456798887664
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=4.2e-05 Score=71.52 Aligned_cols=97 Identities=14% Similarity=0.106 Sum_probs=58.5
Q ss_pred CcEEEEcCChhhHHHHHHHH-h-----------hcHHHHh------hC------CCeEecChHHhhcCCCEEEEeeCCcc
Q psy6714 133 SDKQIAGTTERGPGALIASL-N-----------IVSKATG------TM------GAKITFDNKEVTLNSEVIILAVKPHI 188 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al-~-----------r~~e~l~------e~------Gv~v~~d~~eav~~ADIVILAVpP~~ 188 (303)
|||+|||+|.||.+ ++..+ . +..+++. .. ...+..+..+++++||+||+|++...
T Consensus 1 mkI~VIGaG~~G~~-la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~aDvViiav~~~~ 79 (319)
T 1a5z_A 1 MKIGIVGLGRVGSS-TAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQ 79 (319)
T ss_dssp CEEEEECCSHHHHH-HHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCC
T ss_pred CEEEEECCCHHHHH-HHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCCHHHhCCCCEEEEccCCCC
Confidence 78999999999995 44331 1 1111111 00 22332223567889999999998533
Q ss_pred ----------------HHHHHHhhccccCCCCEEEEecCCCcHH--HHHhhC--CCCCceEEEe
Q psy6714 189 ----------------VPVALNDIKPVFNESNLLISVAGGVPIK--NMEQAL--PKNSRIIRAM 232 (303)
Q Consensus 189 ----------------v~~VL~eI~~~L~~g~IVVSiaaGV~ie--~L~~~l--~~~~~VVr~m 232 (303)
+.++++.+.++. ++.+||...+++... .+.+.. +. .+++.+.
T Consensus 80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~~~~~~~~~~~~~~-~rviG~~ 141 (319)
T 1a5z_A 80 KPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVDVLTYFFLKESGMDP-RKVFGSG 141 (319)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHHHHHHHHHHTCCT-TTEEECT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcHHHHHHHHHHHhCCCh-hhEEeeC
Confidence 567777787764 666777788887763 233332 42 4666653
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00016 Score=71.32 Aligned_cols=140 Identities=14% Similarity=0.191 Sum_probs=78.0
Q ss_pred CCCcEEEEcCChhhHHHHHHHH----------hhcHH-------------------HH---hhCC-CeEecChHHhhcCC
Q psy6714 131 NRSDKQIAGTTERGPGALIASL----------NIVSK-------------------AT---GTMG-AKITFDNKEVTLNS 177 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al----------~r~~e-------------------~l---~e~G-v~v~~d~~eav~~A 177 (303)
.|.+|+|||+|-||.+ ++..+ +.+.+ .+ .+.| +..+++..++++.|
T Consensus 20 ~m~~IaViGlGYVGLp-~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~a 98 (444)
T 3vtf_A 20 HMASLSVLGLGYVGVV-HAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAAT 98 (444)
T ss_dssp CCCEEEEECCSHHHHH-HHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTS
T ss_pred CCCEEEEEccCHHHHH-HHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcC
Confidence 4779999999999985 33221 11111 11 1223 45677888899999
Q ss_pred CEEEEeeC-Cc---------cHHHHHHhhccccC---CCCEEE--Eec-CCCcHHHHHhhC---CCCCc-eEEEecC---
Q psy6714 178 EVIILAVK-PH---------IVPVALNDIKPVFN---ESNLLI--SVA-GGVPIKNMEQAL---PKNSR-IIRAMPN--- 234 (303)
Q Consensus 178 DIVILAVp-P~---------~v~~VL~eI~~~L~---~g~IVV--Sia-aGV~ie~L~~~l---~~~~~-VVr~mPn--- 234 (303)
|++|+||+ |. .+..+++.|.++++ ++++|| |++ -|.+-+.+...+ ..+.. .+.+-|-
T Consensus 99 d~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~v~~~PErl~ 178 (444)
T 3vtf_A 99 DATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASNPEFLR 178 (444)
T ss_dssp SEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCEEEECCCCCC
T ss_pred CceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCceeecCccccc
Confidence 99999996 32 46777777777664 467777 444 344433222222 11122 2333232
Q ss_pred --cHH-hhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEc
Q psy6714 235 --TPA-LVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEV 273 (303)
Q Consensus 235 --~p~-~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~v 273 (303)
... .+..-.-++..+. ++...+.+..+++.++..+.+
T Consensus 179 eG~a~~d~~~~~riViG~~--~~~a~~~~~~ly~~~~~~~~~ 218 (444)
T 3vtf_A 179 EGSALEDFFKPDRIVIGAG--DERAASFLLDVYKAVDAPKLV 218 (444)
T ss_dssp TTSHHHHHHSCSCEEEEES--SHHHHHHHHHHTTTSCSCEEE
T ss_pred CCccccccccCCcEEEcCC--CHHHHHHHHHHHhccCCCEEE
Confidence 111 1111112333332 567778889999888765443
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=7.9e-06 Score=77.25 Aligned_cols=92 Identities=12% Similarity=0.127 Sum_probs=58.6
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhh----------cHH-HHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHH-Hhh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNI----------VSK-ATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVAL-NDI 196 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r----------~~e-~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL-~eI 196 (303)
+..++|||||+|.||. .++..+.. ..+ .+.+ ++....+..+++++||+|++++|.. ....++ ++.
T Consensus 144 l~g~~vgIiG~G~IG~-~~A~~l~~~G~~V~~~d~~~~~~~~~-~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~ 221 (333)
T 1j4a_A 144 VRDQVVGVVGTGHIGQ-VFMQIMEGFGAKVITYDIFRNPELEK-KGYYVDSLDDLYKQADVISLHVPDVPANVHMINDES 221 (333)
T ss_dssp GGGSEEEEECCSHHHH-HHHHHHHHTTCEEEEECSSCCHHHHH-TTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHH
T ss_pred CCCCEEEEEccCHHHH-HHHHHHHHCCCEEEEECCCcchhHHh-hCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHH
Confidence 4468999999999999 46554321 111 1222 2443347788899999999999843 344444 223
Q ss_pred ccccCCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 197 KPVFNESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
...++++.++|.+.-| ++.+.|.+.+.
T Consensus 222 l~~mk~ga~lIn~arg~~vd~~aL~~aL~ 250 (333)
T 1j4a_A 222 IAKMKQDVVIVNVSRGPLVDTDAVIRGLD 250 (333)
T ss_dssp HHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 3456788899977644 34566766664
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.72 E-value=9.8e-05 Score=67.79 Aligned_cols=86 Identities=7% Similarity=-0.067 Sum_probs=56.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHh------------hcHHH----HhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHh
Q psy6714 132 RSDKQIAGTTERGPGALIASLN------------IVSKA----TGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~------------r~~e~----l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~e 195 (303)
++||||||+|.||...++..+. ++.++ ..++|+....+.+++++++|+|++|+|+..-.+++..
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~~~ 85 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEIIKI 85 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHHHHH
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHHHHH
Confidence 5789999999999842444322 12222 2356776678888998899999999998888877765
Q ss_pred hccccCCCCEEEEe-cCCCcHHHHHh
Q psy6714 196 IKPVFNESNLLISV-AGGVPIKNMEQ 220 (303)
Q Consensus 196 I~~~L~~g~IVVSi-aaGV~ie~L~~ 220 (303)
... .|+-|+.- --+.+.+..++
T Consensus 86 al~---~gk~vl~EKP~~~~~~~~~~ 108 (308)
T 3uuw_A 86 LLN---LGVHVYVDKPLASTVSQGEE 108 (308)
T ss_dssp HHH---TTCEEEECSSSSSSHHHHHH
T ss_pred HHH---CCCcEEEcCCCCCCHHHHHH
Confidence 433 45544421 12345544443
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00029 Score=65.33 Aligned_cols=72 Identities=15% Similarity=0.092 Sum_probs=49.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHh-h------------cHHH----HhhCCC-eEecChHHhhc--CCCEEEEeeCCccHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLN-I------------VSKA----TGTMGA-KITFDNKEVTL--NSEVIILAVKPHIVPV 191 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~-r------------~~e~----l~e~Gv-~v~~d~~eav~--~ADIVILAVpP~~v~~ 191 (303)
++||||||+|.||. .++..+. . ..++ .+++|+ .+..+..++++ ++|+|++|+|+....+
T Consensus 8 ~~~v~iiG~G~ig~-~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~ 86 (346)
T 3cea_A 8 PLRAAIIGLGRLGE-RHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPE 86 (346)
T ss_dssp CEEEEEECCSTTHH-HHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHHH
T ss_pred cceEEEEcCCHHHH-HHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHHH
Confidence 68999999999998 3443332 1 1122 234687 67788888886 6999999999887777
Q ss_pred HHHhhccccCCCCEEE
Q psy6714 192 ALNDIKPVFNESNLLI 207 (303)
Q Consensus 192 VL~eI~~~L~~g~IVV 207 (303)
++.... ..|+.|+
T Consensus 87 ~~~~al---~~G~~v~ 99 (346)
T 3cea_A 87 MTIYAM---NAGLNVF 99 (346)
T ss_dssp HHHHHH---HTTCEEE
T ss_pred HHHHHH---HCCCEEE
Confidence 765543 3455555
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00018 Score=66.61 Aligned_cols=65 Identities=9% Similarity=0.105 Sum_probs=43.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh-----------cHHH----HhhCCCeE-ecChHHhh-cCCCEEEEeeCCccHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI-----------VSKA----TGTMGAKI-TFDNKEVT-LNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r-----------~~e~----l~e~Gv~v-~~d~~eav-~~ADIVILAVpP~~v~~VL~ 194 (303)
+|||||||+|.||...++..+.. ..++ ..++|+.. ..+..+++ .++|+|++|+|+....+++.
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~ 81 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAA 81 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHHHHH
Confidence 57999999999997324433221 1222 23567653 45555666 68999999999988877775
Q ss_pred hh
Q psy6714 195 DI 196 (303)
Q Consensus 195 eI 196 (303)
..
T Consensus 82 ~a 83 (323)
T 1xea_A 82 FF 83 (323)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.70 E-value=5.2e-05 Score=67.38 Aligned_cols=75 Identities=16% Similarity=0.040 Sum_probs=47.5
Q ss_pred CcEEEEcCChhhHHHHHHHHhhcHHHHh---hCC--C-eEecChHHhh-cCCCEEEEeeCCccHHHHHHhhccccCCCCE
Q psy6714 133 SDKQIAGTTERGPGALIASLNIVSKATG---TMG--A-KITFDNKEVT-LNSEVIILAVKPHIVPVALNDIKPVFNESNL 205 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~r~~e~l~---e~G--v-~v~~d~~eav-~~ADIVILAVpP~~v~~VL~eI~~~L~~g~I 205 (303)
|||||||+|.||.. ++..+....-.+. ... . ....+..+++ .++|+||+|++++...+++... +..|+.
T Consensus 1 m~vgiIG~G~mG~~-~~~~l~~~g~~lv~v~d~~~~~~~~~~~~~~l~~~~~DvVv~~~~~~~~~~~~~~~---l~~G~~ 76 (236)
T 2dc1_A 1 MLVGLIGYGAIGKF-LAEWLERNGFEIAAILDVRGEHEKMVRGIDEFLQREMDVAVEAASQQAVKDYAEKI---LKAGID 76 (236)
T ss_dssp CEEEEECCSHHHHH-HHHHHHHTTCEEEEEECSSCCCTTEESSHHHHTTSCCSEEEECSCHHHHHHHHHHH---HHTTCE
T ss_pred CEEEEECCCHHHHH-HHHHHhcCCCEEEEEEecCcchhhhcCCHHHHhcCCCCEEEECCCHHHHHHHHHHH---HHCCCc
Confidence 68999999999995 4433221100000 000 0 0345778888 6899999999988877777543 346777
Q ss_pred EEEecC
Q psy6714 206 LISVAG 211 (303)
Q Consensus 206 VVSiaa 211 (303)
||....
T Consensus 77 vv~~~~ 82 (236)
T 2dc1_A 77 LIVLST 82 (236)
T ss_dssp EEESCG
T ss_pred EEEECc
Confidence 775543
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=1.9e-05 Score=71.43 Aligned_cols=105 Identities=13% Similarity=0.185 Sum_probs=64.4
Q ss_pred CCCcEEEEcCChhhHHHHHHHH----------hhcHHH---H-hhCCCeEecChHHhhcCCCEEEEeeCCccHH---HHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASL----------NIVSKA---T-GTMGAKITFDNKEVTLNSEVIILAVKPHIVP---VAL 193 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al----------~r~~e~---l-~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~---~VL 193 (303)
.. +|+|||+|.||.+ ++..+ ++..++ + .++|.. ..+..++ +++|+||+|+|+.... .++
T Consensus 116 ~~-~v~iiG~G~~g~~-~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp~~~~~~~~~~l 191 (263)
T 2d5c_A 116 KG-PALVLGAGGAGRA-VAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATRVGLEDPSASPL 191 (263)
T ss_dssp CS-CEEEECCSHHHHH-HHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSSTTTTCTTCCSS
T ss_pred CC-eEEEECCcHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccCCCCCCCCCCCC
Confidence 35 8999999999994 54432 222222 2 234655 4566777 8999999999977432 222
Q ss_pred HhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCc
Q psy6714 194 NDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGA 243 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~ 243 (303)
. .+.++++++|+++..+.....+.+.+.. ..+++++++++.++++.
T Consensus 192 ~--~~~l~~g~~viD~~~~p~~t~l~~~a~~--~g~~~v~g~~mlv~q~~ 237 (263)
T 2d5c_A 192 P--AELFPEEGAAVDLVYRPLWTRFLREAKA--KGLKVQTGLPMLAWQGA 237 (263)
T ss_dssp C--GGGSCSSSEEEESCCSSSSCHHHHHHHH--TTCEEECSHHHHHHHHH
T ss_pred C--HHHcCCCCEEEEeecCCcccHHHHHHHH--CcCEEECcHHHHHHHHH
Confidence 1 3456788888876543211124333321 23478899998887654
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00032 Score=65.10 Aligned_cols=87 Identities=13% Similarity=-0.002 Sum_probs=55.8
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh--------------cHHH----HhhCCC-eEecChHHhhc--CCCEEEEeeCCccH
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI--------------VSKA----TGTMGA-KITFDNKEVTL--NSEVIILAVKPHIV 189 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r--------------~~e~----l~e~Gv-~v~~d~~eav~--~ADIVILAVpP~~v 189 (303)
|++||||||+|.||.. ++..+.. ..++ .+++|+ .+..|.+++++ +.|+|++|+|+..-
T Consensus 1 M~~rigiiG~G~ig~~-~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H 79 (334)
T 3ohs_X 1 MALRWGIVSVGLISSD-FTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQH 79 (334)
T ss_dssp -CEEEEEECCSHHHHH-HHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGH
T ss_pred CccEEEEECchHHHHH-HHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHH
Confidence 3579999999999994 5444321 1122 235677 57788999887 69999999998877
Q ss_pred HHHHHhhccccCCCCEEEEec-CCCcHHHHHhh
Q psy6714 190 PVALNDIKPVFNESNLLISVA-GGVPIKNMEQA 221 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSia-aGV~ie~L~~~ 221 (303)
.+++.... ..|+-|+.-. -..+.+..+++
T Consensus 80 ~~~~~~al---~~GkhVl~EKP~a~~~~e~~~l 109 (334)
T 3ohs_X 80 KAAVMLCL---AAGKAVLCEKPMGVNAAEVREM 109 (334)
T ss_dssp HHHHHHHH---HTTCEEEEESSSSSSHHHHHHH
T ss_pred HHHHHHHH---hcCCEEEEECCCCCCHHHHHHH
Confidence 77765543 2455555321 13455555544
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=2.5e-05 Score=76.01 Aligned_cols=94 Identities=19% Similarity=0.184 Sum_probs=61.1
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcH--------HHHhhCC-CeEecChHHhhcCCCEEEEeeCCc-cHHHHH-Hhhcc
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIVS--------KATGTMG-AKITFDNKEVTLNSEVIILAVKPH-IVPVAL-NDIKP 198 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~~--------e~l~e~G-v~v~~d~~eav~~ADIVILAVpP~-~v~~VL-~eI~~ 198 (303)
+..++|||||+|.||. .++..+.... ......| +....+..+++++||+|++++|.. ....++ ++...
T Consensus 143 l~gktlGiIGlG~IG~-~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~ 221 (404)
T 1sc6_A 143 ARGKKLGIIGYGHIGT-QLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEIS 221 (404)
T ss_dssp STTCEEEEECCSHHHH-HHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHH
T ss_pred cCCCEEEEEeECHHHH-HHHHHHHHCCCEEEEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHh
Confidence 4578999999999999 4655432211 0001223 555567889999999999999854 444444 23344
Q ss_pred ccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 199 VFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 199 ~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
.++++.++|.+.-| ++.+.|.+.+..
T Consensus 222 ~mk~ga~lIN~aRg~~vd~~aL~~aL~~ 249 (404)
T 1sc6_A 222 LMKPGSLLINASRGTVVDIPALADALAS 249 (404)
T ss_dssp HSCTTEEEEECSCSSSBCHHHHHHHHHT
T ss_pred hcCCCeEEEECCCChHHhHHHHHHHHHc
Confidence 57788999977644 344567776653
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.64 E-value=2.7e-05 Score=76.21 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=59.2
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcH---------HHHhhCCCeEecChHHhhcCCCEEEEeeCC-ccHHHHH-Hhhcc
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIVS---------KATGTMGAKITFDNKEVTLNSEVIILAVKP-HIVPVAL-NDIKP 198 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~~---------e~l~e~Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL-~eI~~ 198 (303)
+..++|||||+|.||. .++..+.... ......++....+..+++++||+|++++|. .....++ .+...
T Consensus 154 l~gktvGIIGlG~IG~-~vA~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~ 232 (416)
T 3k5p_A 154 VRGKTLGIVGYGNIGS-QVGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLR 232 (416)
T ss_dssp STTCEEEEECCSHHHH-HHHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHH
T ss_pred CCCCEEEEEeeCHHHH-HHHHHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHh
Confidence 4568999999999999 4655432211 011112344556888999999999999984 3344443 23334
Q ss_pred ccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 199 VFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 199 ~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
.++++.++|.+.-| ++.+.|.+.|..
T Consensus 233 ~mk~gailIN~aRG~vvd~~aL~~aL~~ 260 (416)
T 3k5p_A 233 KMKKGAFLINNARGSDVDLEALAKVLQE 260 (416)
T ss_dssp HSCTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred hCCCCcEEEECCCChhhhHHHHHHHHHc
Confidence 56789999987643 345667776653
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00051 Score=66.69 Aligned_cols=87 Identities=5% Similarity=0.048 Sum_probs=53.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHh------------hcHHH----HhhCCCe-----EecChHHhhc--CCCEEEEeeCCcc
Q psy6714 132 RSDKQIAGTTERGPGALIASLN------------IVSKA----TGTMGAK-----ITFDNKEVTL--NSEVIILAVKPHI 188 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~------------r~~e~----l~e~Gv~-----v~~d~~eav~--~ADIVILAVpP~~ 188 (303)
++||||||+|.||...++..+. ...++ ..++|+. +..|..++++ +.|+|++|+|+..
T Consensus 83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~ 162 (433)
T 1h6d_A 83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSL 162 (433)
T ss_dssp CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGG
T ss_pred ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchh
Confidence 5799999999999622443321 11222 2345664 4677888886 7999999999888
Q ss_pred HHHHHHhhccccCCCCEEEEec-CCCcHHHHHhh
Q psy6714 189 VPVALNDIKPVFNESNLLISVA-GGVPIKNMEQA 221 (303)
Q Consensus 189 v~~VL~eI~~~L~~g~IVVSia-aGV~ie~L~~~ 221 (303)
..+++.... ..|+-|+.-. -+.+.+..+++
T Consensus 163 h~~~~~~al---~aGk~Vl~EKPla~~~~e~~~l 193 (433)
T 1h6d_A 163 HAEFAIRAF---KAGKHVMCEKPMATSVADCQRM 193 (433)
T ss_dssp HHHHHHHHH---HTTCEEEECSSCCSSHHHHHHH
T ss_pred HHHHHHHHH---HCCCcEEEcCCCCCCHHHHHHH
Confidence 777776543 2455444321 23455544443
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.61 E-value=9.9e-06 Score=73.93 Aligned_cols=106 Identities=9% Similarity=0.002 Sum_probs=67.0
Q ss_pred cEEEEcCChhhHHHHHHHH-----------hhcHHHHhh----CCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhh-c
Q psy6714 134 DKQIAGTTERGPGALIASL-----------NIVSKATGT----MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDI-K 197 (303)
Q Consensus 134 kIgIIGlG~MG~~~La~al-----------~r~~e~l~e----~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI-~ 197 (303)
+++|||+|.||.+ ++..+ +++.+++.+ ++.....+..++++++|+||.|+|...-.+. ..+ .
T Consensus 110 ~vliiGaGg~a~a-i~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~-~~i~~ 187 (253)
T 3u62_A 110 PVVVVGAGGAARA-VIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEE-LPVSD 187 (253)
T ss_dssp SEEEECCSHHHHH-HHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCC-CSCCH
T ss_pred eEEEECcHHHHHH-HHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCC-CCCCH
Confidence 7999999999995 43332 234444432 2323345566778899999999963211000 011 1
Q ss_pred cccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcE
Q psy6714 198 PVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGAS 244 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~t 244 (303)
..++++.+|++++.+ ...-++.....+++ ++||+.++.++++..
T Consensus 188 ~~l~~~~~V~Divy~-~T~ll~~A~~~G~~--~~~~Gl~MLv~Qa~~ 231 (253)
T 3u62_A 188 DSLKNLSLVYDVIYF-DTPLVVKARKLGVK--HIIKGNLMFYYQAME 231 (253)
T ss_dssp HHHTTCSEEEECSSS-CCHHHHHHHHHTCS--EEECTHHHHHHHHHH
T ss_pred HHhCcCCEEEEeeCC-CcHHHHHHHHCCCc--EEECCHHHHHHHHHH
Confidence 235578899999888 66666655432222 489999999998764
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00039 Score=64.12 Aligned_cols=86 Identities=5% Similarity=0.058 Sum_probs=53.9
Q ss_pred CcEEEEcCChhhHHHHHHHHh-----------hcHHH----HhhCCCe-EecChHHhhc--CCCEEEEeeCCccHHHHHH
Q psy6714 133 SDKQIAGTTERGPGALIASLN-----------IVSKA----TGTMGAK-ITFDNKEVTL--NSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~-----------r~~e~----l~e~Gv~-v~~d~~eav~--~ADIVILAVpP~~v~~VL~ 194 (303)
|||||||+|.||...++..+. +..++ ..++|+. ...+..++++ ++|+|++|+|+....+++.
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~ 80 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQTL 80 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHHH
T ss_pred CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHHHHH
Confidence 689999999999843243321 11222 2356774 6678888886 5999999999888777776
Q ss_pred hhccccCCCCEEEEec-CCCcHHHHHhh
Q psy6714 195 DIKPVFNESNLLISVA-GGVPIKNMEQA 221 (303)
Q Consensus 195 eI~~~L~~g~IVVSia-aGV~ie~L~~~ 221 (303)
... ..|+.|+.-. -+.+.+..+++
T Consensus 81 ~al---~~Gk~v~~ekP~~~~~~~~~~l 105 (332)
T 2glx_A 81 AAI---RAGKHVLCEKPLAMTLEDAREM 105 (332)
T ss_dssp HHH---HTTCEEEECSSSCSSHHHHHHH
T ss_pred HHH---HCCCeEEEeCCCcCCHHHHHHH
Confidence 543 3566555321 23455544443
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=97.58 E-value=4e-05 Score=74.17 Aligned_cols=92 Identities=14% Similarity=0.076 Sum_probs=58.0
Q ss_pred ccCCCcEEEEcCChhhHHHHHHHHhh----------cHHHHhhCCCeEecChHHhhcCCCEEEEeeCCc-c----HHHHH
Q psy6714 129 RWNRSDKQIAGTTERGPGALIASLNI----------VSKATGTMGAKITFDNKEVTLNSEVIILAVKPH-I----VPVAL 193 (303)
Q Consensus 129 ~~~~mkIgIIGlG~MG~~~La~al~r----------~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~----v~~VL 193 (303)
.+..++|||||+|.||. .++..++. ..+. ...+. ...+..+++++||+|++++|.. . ...++
T Consensus 116 ~l~gktvGIIGlG~IG~-~vA~~l~a~G~~V~~~d~~~~~-~~~~~-~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li 192 (381)
T 3oet_A 116 SLRDRTIGIVGVGNVGS-RLQTRLEALGIRTLLCDPPRAA-RGDEG-DFRTLDELVQEADVLTFHTPLYKDGPYKTLHLA 192 (381)
T ss_dssp CGGGCEEEEECCSHHHH-HHHHHHHHTTCEEEEECHHHHH-TTCCS-CBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSB
T ss_pred ccCCCEEEEEeECHHHH-HHHHHHHHCCCEEEEECCChHH-hccCc-ccCCHHHHHhhCCEEEEcCcCCccccccchhhc
Confidence 35578999999999999 46654321 1111 11222 3467889999999999999833 2 23333
Q ss_pred -HhhccccCCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 194 -NDIKPVFNESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 194 -~eI~~~L~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
.+....++++.++|.+.-| ++.+.|.+.+.
T Consensus 193 ~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~ 225 (381)
T 3oet_A 193 DETLIRRLKPGAILINACRGPVVDNAALLARLN 225 (381)
T ss_dssp CHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred CHHHHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 2333346688999987633 34566766664
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.57 E-value=6e-05 Score=68.56 Aligned_cols=96 Identities=11% Similarity=0.021 Sum_probs=60.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcHHHH---------hhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCC
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVSKAT---------GTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNE 202 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~e~l---------~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~ 202 (303)
||||+|+|+|.||. .++..+......+ ...|+.++.|..+++ ++|+||-++.|..+.+.+. +..
T Consensus 3 MmkI~ViGaGrMG~-~i~~~l~~~~~eLva~~d~~~~~~~gv~v~~dl~~l~-~~DVvIDft~p~a~~~~~~-----l~~ 75 (243)
T 3qy9_A 3 SMKILLIGYGAMNQ-RVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVK-GADVAIDFSNPNLLFPLLD-----EDF 75 (243)
T ss_dssp CCEEEEECCSHHHH-HHHHHHHHTTCEEEEEECSSCC--CCSCBCSCTTTCT-TCSEEEECSCHHHHHHHHT-----SCC
T ss_pred ceEEEEECcCHHHH-HHHHHHHhCCCEEEEEEecCccccCCCceeCCHHHHh-CCCEEEEeCChHHHHHHHH-----Hhc
Confidence 78999999999999 5766543322111 124666667777777 8999997888887777765 334
Q ss_pred CCEEEEecCCCcHHH---HHhhCCCCCceEEEecCcH
Q psy6714 203 SNLLISVAGGVPIKN---MEQALPKNSRIIRAMPNTP 236 (303)
Q Consensus 203 g~IVVSiaaGV~ie~---L~~~l~~~~~VVr~mPn~p 236 (303)
+.-+|....|.+.+. |++.... .++ -+-||..
T Consensus 76 g~~vVigTTG~s~e~~~~l~~aa~~-~~v-~~a~N~S 110 (243)
T 3qy9_A 76 HLPLVVATTGEKEKLLNKLDELSQN-MPV-FFSANMS 110 (243)
T ss_dssp CCCEEECCCSSHHHHHHHHHHHTTT-SEE-EECSSCC
T ss_pred CCceEeCCCCCCHHHHHHHHHHHhc-CCE-EEECCcc
Confidence 554555556887644 4444432 333 3335643
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=97.56 E-value=2.3e-05 Score=74.03 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=57.3
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhh----------cHHHHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHH-Hhhc
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNI----------VSKATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVAL-NDIK 197 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r----------~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL-~eI~ 197 (303)
+..++|||||+|.||. .++..++. ..+...+.++. ..+..+++++||+|++++|.. ....++ ++..
T Consensus 144 l~g~~vgIiG~G~IG~-~~A~~l~~~G~~V~~~d~~~~~~~~~~~~-~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l 221 (331)
T 1xdw_A 144 VRNCTVGVVGLGRIGR-VAAQIFHGMGATVIGEDVFEIKGIEDYCT-QVSLDEVLEKSDIITIHAPYIKENGAVVTRDFL 221 (331)
T ss_dssp GGGSEEEEECCSHHHH-HHHHHHHHTTCEEEEECSSCCCSCTTTCE-ECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHH
T ss_pred CCCCEEEEECcCHHHH-HHHHHHHHCCCEEEEECCCccHHHHhccc-cCCHHHHHhhCCEEEEecCCchHHHHHhCHHHH
Confidence 4568999999999999 46554321 11110111233 346778899999999999843 333333 2333
Q ss_pred cccCCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 198 PVFNESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 198 ~~L~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
..++++.++|.+.-| ++.+.|.+.+.
T Consensus 222 ~~mk~ga~lin~srg~~vd~~aL~~aL~ 249 (331)
T 1xdw_A 222 KKMKDGAILVNCARGQLVDTEAVIEAVE 249 (331)
T ss_dssp HTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred hhCCCCcEEEECCCcccccHHHHHHHHH
Confidence 446788888877643 44566766664
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00036 Score=66.41 Aligned_cols=86 Identities=7% Similarity=0.008 Sum_probs=54.5
Q ss_pred CCcEEEEcCC-hhhHHHHHHHHh------------hcHHH----HhhCCCeEecChHHhhc--CCCEEEEeeCCccHHHH
Q psy6714 132 RSDKQIAGTT-ERGPGALIASLN------------IVSKA----TGTMGAKITFDNKEVTL--NSEVIILAVKPHIVPVA 192 (303)
Q Consensus 132 ~mkIgIIGlG-~MG~~~La~al~------------r~~e~----l~e~Gv~v~~d~~eav~--~ADIVILAVpP~~v~~V 192 (303)
+|||||||+| .||.. ++..+. ...++ ..++|+....|.+++++ +.|+|++|+|+..-.++
T Consensus 2 ~~rigiiG~G~~~~~~-~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~~ 80 (387)
T 3moi_A 2 KIRFGICGLGFAGSVL-MAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFHCEH 80 (387)
T ss_dssp CEEEEEECCSHHHHTT-HHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGHHHH
T ss_pred ceEEEEEeCCHHHHHH-HHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHHHHH
Confidence 5799999999 88873 333221 12222 23568888889999886 49999999998877666
Q ss_pred HHhhccccCCCCEEEEec-CCCcHHHHHhh
Q psy6714 193 LNDIKPVFNESNLLISVA-GGVPIKNMEQA 221 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSia-aGV~ie~L~~~ 221 (303)
+..... .++-|+.-. -..+.+..+++
T Consensus 81 ~~~al~---aGk~Vl~EKP~a~~~~e~~~l 107 (387)
T 3moi_A 81 VVQASE---QGLHIIVEKPLTLSRDEADRM 107 (387)
T ss_dssp HHHHHH---TTCEEEECSCCCSCHHHHHHH
T ss_pred HHHHHH---CCCceeeeCCccCCHHHHHHH
Confidence 655432 455555321 13445544443
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.52 E-value=3.3e-05 Score=74.66 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=59.1
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhh----------cHHHHhhCCCeEecChHHhhcCCCEEEEeeCCcc-----HHHHH-
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNI----------VSKATGTMGAKITFDNKEVTLNSEVIILAVKPHI-----VPVAL- 193 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r----------~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~-----v~~VL- 193 (303)
+..++|||||+|+||. .++..++. ..+. ...|.. ..+..+++++||+|++++|... ...++
T Consensus 114 l~g~tvGIIGlG~IG~-~vA~~l~~~G~~V~~~d~~~~~-~~~g~~-~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~ 190 (380)
T 2o4c_A 114 LAERTYGVVGAGQVGG-RLVEVLRGLGWKVLVCDPPRQA-REPDGE-FVSLERLLAEADVISLHTPLNRDGEHPTRHLLD 190 (380)
T ss_dssp GGGCEEEEECCSHHHH-HHHHHHHHTTCEEEEECHHHHH-HSTTSC-CCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBC
T ss_pred cCCCEEEEEeCCHHHH-HHHHHHHHCCCEEEEEcCChhh-hccCcc-cCCHHHHHHhCCEEEEeccCccccccchhhhcC
Confidence 4568999999999999 46654321 1111 123443 3577888999999999998443 33333
Q ss_pred HhhccccCCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 194 NDIKPVFNESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
+++...++++.+||.+.-| ++.+.|.+.+.
T Consensus 191 ~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~ 222 (380)
T 2o4c_A 191 EPRLAALRPGTWLVNASRGAVVDNQALRRLLE 222 (380)
T ss_dssp HHHHHTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 2344456788898877644 34556776664
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.52 E-value=2.7e-05 Score=73.67 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=58.4
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhh----------cHHHHhhCCCeEecChHHhhcCCCEEEEeeCCcc-HHHHH-Hhhc
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNI----------VSKATGTMGAKITFDNKEVTLNSEVIILAVKPHI-VPVAL-NDIK 197 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r----------~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~-v~~VL-~eI~ 197 (303)
+..++|||||+|.||. .++..++. ......+.++. ..+..+++++||+|++++|... ...++ .+..
T Consensus 143 l~g~~vgIiG~G~IG~-~~A~~l~~~G~~V~~~d~~~~~~~~~~~~-~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l 220 (333)
T 1dxy_A 143 LGQQTVGVMGTGHIGQ-VAIKLFKGFGAKVIAYDPYPMKGDHPDFD-YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAF 220 (333)
T ss_dssp GGGSEEEEECCSHHHH-HHHHHHHHTTCEEEEECSSCCSSCCTTCE-ECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHH
T ss_pred CCCCEEEEECcCHHHH-HHHHHHHHCCCEEEEECCCcchhhHhccc-cCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHH
Confidence 4568999999999999 46554321 11110111233 3467888999999999998543 43333 2333
Q ss_pred cccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 198 PVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 198 ~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
..++++.++|.+.-| ++.+.|.+.+..
T Consensus 221 ~~mk~ga~lIn~srg~~vd~~aL~~aL~~ 249 (333)
T 1dxy_A 221 NLMKPGAIVINTARPNLIDTQAMLSNLKS 249 (333)
T ss_dssp HHSCTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred hhCCCCcEEEECCCCcccCHHHHHHHHHh
Confidence 456788888876644 455677777653
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00077 Score=63.64 Aligned_cols=86 Identities=5% Similarity=0.031 Sum_probs=55.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHh------------hcHHHHh-hC-CCeEecChHHhhc--CCCEEEEeeCCccHHHHHHh
Q psy6714 132 RSDKQIAGTTERGPGALIASLN------------IVSKATG-TM-GAKITFDNKEVTL--NSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~------------r~~e~l~-e~-Gv~v~~d~~eav~--~ADIVILAVpP~~v~~VL~e 195 (303)
++||||||+|.||....+..+. +..+++. +. ++.+..|.+++++ +.|+|++|+|+..-.+++..
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~~~~ 86 (364)
T 3e82_A 7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPLARL 86 (364)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHHCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHHHHH
Confidence 5799999999999842333322 2223332 33 6778889999887 78999999998776666654
Q ss_pred hccccCCCCEEEEecC--CCcHHHHHhh
Q psy6714 196 IKPVFNESNLLISVAG--GVPIKNMEQA 221 (303)
Q Consensus 196 I~~~L~~g~IVVSiaa--GV~ie~L~~~ 221 (303)
.. ..|+-|+. -. +.+.+..+++
T Consensus 87 al---~aGk~Vl~-EKPla~~~~e~~~l 110 (364)
T 3e82_A 87 AL---NAGKHVVV-DKPFTLDMQEAREL 110 (364)
T ss_dssp HH---HTTCEEEE-CSCSCSSHHHHHHH
T ss_pred HH---HCCCcEEE-eCCCcCCHHHHHHH
Confidence 43 35565553 33 3455555443
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=97.49 E-value=5.6e-05 Score=62.74 Aligned_cols=103 Identities=14% Similarity=0.142 Sum_probs=64.5
Q ss_pred CCcEEEEcC----ChhhHHHHHHHHhhc--------HHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccc
Q psy6714 132 RSDKQIAGT----TERGPGALIASLNIV--------SKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPV 199 (303)
Q Consensus 132 ~mkIgIIGl----G~MG~~~La~al~r~--------~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~ 199 (303)
..+|+|||+ |.||.. ++..+.+. ...-.-.|+.+..+..|+.+..|+++++||+..+.++++++..
T Consensus 14 p~~IavIGaS~~~g~~G~~-~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el~~~vDlvii~vp~~~v~~v~~~~~~- 91 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNI-ILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPPKVGLQVAKEAVE- 91 (138)
T ss_dssp CCEEEEETCCSCTTSHHHH-HHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSCHHHHHHHHHHHHH-
T ss_pred CCeEEEEeecCCCCCHHHH-HHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHhCCCCCEEEEEeCHHHHHHHHHHHHH-
Confidence 457999999 999995 44433211 1111124777777888888899999999999999999988765
Q ss_pred cCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhh
Q psy6714 200 FNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALV 239 (303)
Q Consensus 200 L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v 239 (303)
...+.+|+ ..++. .+++.+.+.. ..+--+.||....+
T Consensus 92 ~g~~~i~~-~~~~~-~~~l~~~a~~-~Gi~~igpnc~g~~ 128 (138)
T 1y81_A 92 AGFKKLWF-QPGAE-SEEIRRFLEK-AGVEYSFGRCIMVE 128 (138)
T ss_dssp TTCCEEEE-CTTSC-CHHHHHHHHH-HTCEEECSCCHHHH
T ss_pred cCCCEEEE-cCccH-HHHHHHHHHH-CCCEEEcCCcceEE
Confidence 33444555 44444 3445444431 11222347765443
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00032 Score=66.14 Aligned_cols=85 Identities=11% Similarity=0.085 Sum_probs=55.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh------------cHH---HHhhCCCeEecChHHhhc--CCCEEEEeeCCccHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI------------VSK---ATGTMGAKITFDNKEVTL--NSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r------------~~e---~l~e~Gv~v~~d~~eav~--~ADIVILAVpP~~v~~VL~ 194 (303)
++||||||+|.||. ..+..+.. ..+ .+.+.|+....|.+++++ +.|+|++|+|+..-.+++.
T Consensus 5 ~~~vgiiG~G~~g~-~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~ 83 (359)
T 3e18_A 5 KYQLVIVGYGGMGS-YHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSHKELAI 83 (359)
T ss_dssp CEEEEEECCSHHHH-HHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHHH
T ss_pred cCcEEEECcCHHHH-HHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH
Confidence 46899999999998 44444321 122 234678887888899887 7899999999887777765
Q ss_pred hhccccCCCCEEEEec-CCCcHHHHHh
Q psy6714 195 DIKPVFNESNLLISVA-GGVPIKNMEQ 220 (303)
Q Consensus 195 eI~~~L~~g~IVVSia-aGV~ie~L~~ 220 (303)
... ..|+-|+.-. -+.+.+..++
T Consensus 84 ~al---~aGkhVl~EKP~a~~~~ea~~ 107 (359)
T 3e18_A 84 SAL---EAGKHVVCEKPVTMTSEDLLA 107 (359)
T ss_dssp HHH---HTTCEEEEESSCCSSHHHHHH
T ss_pred HHH---HCCCCEEeeCCCcCCHHHHHH
Confidence 543 2455555321 1344554444
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00042 Score=64.73 Aligned_cols=87 Identities=9% Similarity=0.017 Sum_probs=54.7
Q ss_pred CCCcEEEEcCChhhHHHHHH-HHh------------hcHH---HHhh-CCCeEecChHHhhcC--CCEEEEeeCCccHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIA-SLN------------IVSK---ATGT-MGAKITFDNKEVTLN--SEVIILAVKPHIVPV 191 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~-al~------------r~~e---~l~e-~Gv~v~~d~~eav~~--ADIVILAVpP~~v~~ 191 (303)
+++||||||+|.||..+.+. .+. +..+ .+.+ .|+.+..|.++++++ .|+|++|+|+..-.+
T Consensus 1 m~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 80 (345)
T 3f4l_A 1 MVINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFE 80 (345)
T ss_dssp -CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHHH
T ss_pred CceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHHHH
Confidence 36799999999999843333 211 1111 1222 367788899998875 899999999887766
Q ss_pred HHHhhccccCCCCEEEEecC--CCcHHHHHhh
Q psy6714 192 ALNDIKPVFNESNLLISVAG--GVPIKNMEQA 221 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSiaa--GV~ie~L~~~ 221 (303)
++.... ..|+-|+. -. +.+.+..+++
T Consensus 81 ~~~~al---~aGk~Vl~-EKP~a~~~~e~~~l 108 (345)
T 3f4l_A 81 YAKRAL---EAGKNVLV-EKPFTPTLAQAKEL 108 (345)
T ss_dssp HHHHHH---HTTCEEEE-CSSSCSSHHHHHHH
T ss_pred HHHHHH---HcCCcEEE-eCCCCCCHHHHHHH
Confidence 665543 35666653 24 3455554443
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00056 Score=54.20 Aligned_cols=82 Identities=16% Similarity=0.112 Sum_probs=49.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----------hcHH---HHh-hCCCeE-ecC---hH----HhhcCCCEEEEeeCCccH
Q psy6714 132 RSDKQIAGTTERGPGALIASLN----------IVSK---ATG-TMGAKI-TFD---NK----EVTLNSEVIILAVKPHIV 189 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~-e~Gv~v-~~d---~~----eav~~ADIVILAVpP~~v 189 (303)
.|+|.|+|+|.||. .++..+. +..+ .+. ..|+.. ..+ .. ..++++|+||+|++....
T Consensus 4 ~m~i~IiG~G~iG~-~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~ 82 (140)
T 1lss_A 4 GMYIIIAGIGRVGY-TLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEV 82 (140)
T ss_dssp -CEEEEECCSHHHH-HHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHH
T ss_pred CCEEEEECCCHHHH-HHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchH
Confidence 58999999999999 4665432 1222 233 347643 222 21 125689999999998766
Q ss_pred HHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 190 PVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
...+..+...++.+++|+. +.+...
T Consensus 83 ~~~~~~~~~~~~~~~ii~~-~~~~~~ 107 (140)
T 1lss_A 83 NLMSSLLAKSYGINKTIAR-ISEIEY 107 (140)
T ss_dssp HHHHHHHHHHTTCCCEEEE-CSSTTH
T ss_pred HHHHHHHHHHcCCCEEEEE-ecCHhH
Confidence 6555555555656666654 444444
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.44 E-value=9.4e-05 Score=61.74 Aligned_cols=103 Identities=10% Similarity=0.054 Sum_probs=65.9
Q ss_pred CCcEEEEcC----ChhhHHHHHHHHhh--------cHHH--HhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhc
Q psy6714 132 RSDKQIAGT----TERGPGALIASLNI--------VSKA--TGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 132 ~mkIgIIGl----G~MG~~~La~al~r--------~~e~--l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~ 197 (303)
..+|+|||+ |.||.. ++..+.. +... -.-.|+.+..+..|+.+..|++++|||+..+.++++++.
T Consensus 13 p~~IavIGas~~~g~~G~~-~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el~~~~Dlvii~vp~~~v~~v~~~~~ 91 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYR-VMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFRNSEAAWGVAQEAI 91 (145)
T ss_dssp CCCEEEESCCSCTTSHHHH-HHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCSSCCSEEECCSCSTHHHHHHHHHH
T ss_pred CCEEEEECcCCCCCChHHH-HHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHcCCCCCEEEEEeCHHHHHHHHHHHH
Confidence 457999999 899994 4433321 1111 112477777788888888999999999999999998876
Q ss_pred cccCCCCEEEEecCCCcHHHHHhhCCCCCceEEE-ecCcHHhhh
Q psy6714 198 PVFNESNLLISVAGGVPIKNMEQALPKNSRIIRA-MPNTPALVR 240 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~-mPn~p~~v~ 240 (303)
. ...+.+|+. .+.. .+.+.+.+.. ..+++ .||....+.
T Consensus 92 ~-~g~~~i~i~-~~~~-~~~l~~~a~~--~Gi~~igpnc~g~~~ 130 (145)
T 2duw_A 92 A-IGAKTLWLQ-LGVI-NEQAAVLARE--AGLSVVMDRCPAIEL 130 (145)
T ss_dssp H-HTCCEEECC-TTCC-CHHHHHHHHT--TTCEEECSCCHHHHS
T ss_pred H-cCCCEEEEc-CChH-HHHHHHHHHH--cCCEEEcCCeeeEEc
Confidence 5 334445553 3333 4556555532 22344 488765443
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.44 E-value=8.7e-05 Score=69.06 Aligned_cols=88 Identities=14% Similarity=0.196 Sum_probs=55.8
Q ss_pred CCcEEEEcCChhhHHHHHHHH-h----------hcHHHHh-------------hCC--CeEecChHHhhcCCCEEEEeeC
Q psy6714 132 RSDKQIAGTTERGPGALIASL-N----------IVSKATG-------------TMG--AKITFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-~----------r~~e~l~-------------e~G--v~v~~d~~eav~~ADIVILAVp 185 (303)
+|||+|||+|.||.+ ++..+ . ...+++. ... +..+.+. +++++||+||+|+.
T Consensus 4 ~~kI~VIGaG~~G~~-ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg 81 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGN-IAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITAS 81 (317)
T ss_dssp CCEEEEECCSHHHHH-HHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCC
T ss_pred CCEEEEECCCHHHHH-HHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCC
Confidence 579999999999995 44331 1 1111110 012 3334555 78899999999993
Q ss_pred ----------------CccHHHHHHhhccccCCCCEEEEecCCCcH--HHHHhhC
Q psy6714 186 ----------------PHIVPVALNDIKPVFNESNLLISVAGGVPI--KNMEQAL 222 (303)
Q Consensus 186 ----------------P~~v~~VL~eI~~~L~~g~IVVSiaaGV~i--e~L~~~l 222 (303)
...+.++++++.++. ++.+||...+++.+ ..+.+.+
T Consensus 82 ~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sNp~~~~~~~~~~~~ 135 (317)
T 2ewd_A 82 IPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITNPLDVMVSHFQKVS 135 (317)
T ss_dssp CSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHHHhh
Confidence 123567778887765 57888878777765 3444543
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00061 Score=63.93 Aligned_cols=72 Identities=4% Similarity=0.048 Sum_probs=49.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh------------cHHH----HhhCC----CeEecChHHhhc--CCCEEEEeeCCccH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI------------VSKA----TGTMG----AKITFDNKEVTL--NSEVIILAVKPHIV 189 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r------------~~e~----l~e~G----v~v~~d~~eav~--~ADIVILAVpP~~v 189 (303)
+|||||||+|.||. .++..+.. ..++ ..++| ..+..+.+++++ ++|+|++|+|+..-
T Consensus 6 ~~~vgiiG~G~ig~-~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h 84 (362)
T 1ydw_A 6 QIRIGVMGCADIAR-KVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLH 84 (362)
T ss_dssp CEEEEEESCCTTHH-HHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGH
T ss_pred ceEEEEECchHHHH-HHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHH
Confidence 57999999999998 45444321 1222 23456 366788888886 59999999998887
Q ss_pred HHHHHhhccccCCCCEEE
Q psy6714 190 PVALNDIKPVFNESNLLI 207 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVV 207 (303)
.+++... +..|+-|+
T Consensus 85 ~~~~~~a---l~aGk~V~ 99 (362)
T 1ydw_A 85 VEWAIKA---AEKGKHIL 99 (362)
T ss_dssp HHHHHHH---HTTTCEEE
T ss_pred HHHHHHH---HHCCCeEE
Confidence 7777654 34566555
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0005 Score=64.77 Aligned_cols=85 Identities=14% Similarity=0.105 Sum_probs=54.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHh-h------------cHHH----HhhCC--CeEecChHHhhc--CCCEEEEeeCCccHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLN-I------------VSKA----TGTMG--AKITFDNKEVTL--NSEVIILAVKPHIVP 190 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~-r------------~~e~----l~e~G--v~v~~d~~eav~--~ADIVILAVpP~~v~ 190 (303)
++||||||+|.||.. .+..+. . ..++ .+++| .....+..++++ +.|+|++|+|+..-.
T Consensus 23 ~~rvgiIG~G~~g~~-~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~ 101 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSD-HLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAHA 101 (357)
T ss_dssp CEEEEEECCSHHHHH-HHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGHH
T ss_pred eeeEEEECCcHHHHH-HHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHHH
Confidence 468999999999984 443332 1 1112 23557 677889999887 589999999988877
Q ss_pred HHHHhhccccCCCCEEEEec-CCCcHHHHHh
Q psy6714 191 VALNDIKPVFNESNLLISVA-GGVPIKNMEQ 220 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSia-aGV~ie~L~~ 220 (303)
+++..... .|+-|+.-. -..+.+..++
T Consensus 102 ~~~~~al~---aGk~Vl~EKPla~~~~e~~~ 129 (357)
T 3ec7_A 102 DVAVAALN---ANKYVFCEKPLAVTAADCQR 129 (357)
T ss_dssp HHHHHHHH---TTCEEEEESSSCSSHHHHHH
T ss_pred HHHHHHHH---CCCCEEeecCccCCHHHHHH
Confidence 77765433 455455321 1345554444
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.001 Score=62.19 Aligned_cols=88 Identities=13% Similarity=0.074 Sum_probs=54.9
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh------------c-HHHH-hh---CCCeEecChHHhhcC--CCEEEEeeCCccHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI------------V-SKAT-GT---MGAKITFDNKEVTLN--SEVIILAVKPHIVPV 191 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r------------~-~e~l-~e---~Gv~v~~d~~eav~~--ADIVILAVpP~~v~~ 191 (303)
|++||||||+|.||....+..+.. . .+.+ .+ .|+.+..|.++++++ .|+|++|+|+..-.+
T Consensus 1 M~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 80 (349)
T 3i23_A 1 MTVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTHYD 80 (349)
T ss_dssp CCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGHHH
T ss_pred CeeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHHHH
Confidence 467999999999997323322211 1 1222 22 477888899998875 899999999877666
Q ss_pred HHHhhccccCCCCEEEEecC-CCcHHHHHhh
Q psy6714 192 ALNDIKPVFNESNLLISVAG-GVPIKNMEQA 221 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSiaa-GV~ie~L~~~ 221 (303)
++.... ..|+-|+.-.- ..+.+..+++
T Consensus 81 ~~~~al---~aGk~Vl~EKP~a~~~~e~~~l 108 (349)
T 3i23_A 81 LAKQAI---LAGKSVIVEKPFCDTLEHAEEL 108 (349)
T ss_dssp HHHHHH---HTTCEEEECSCSCSSHHHHHHH
T ss_pred HHHHHH---HcCCEEEEECCCcCCHHHHHHH
Confidence 665543 24555553211 3445554443
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.001 Score=62.55 Aligned_cols=87 Identities=11% Similarity=0.040 Sum_probs=56.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHh------------hcHHHHh-hC-CCeEecChHHhhc--CCCEEEEeeCCccHHHHHHh
Q psy6714 132 RSDKQIAGTTERGPGALIASLN------------IVSKATG-TM-GAKITFDNKEVTL--NSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~------------r~~e~l~-e~-Gv~v~~d~~eav~--~ADIVILAVpP~~v~~VL~e 195 (303)
++||||||+|.||....+..+. +..+++. ++ ++.+..|.+++++ +.|+|++|+|+..-.+++..
T Consensus 5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~ 84 (358)
T 3gdo_A 5 TIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAEVVHELEEITNDPAIELVIVTTPSGLHYEHTMA 84 (358)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHHHCTTSEEESSTHHHHTCTTCCEEEECSCTTTHHHHHHH
T ss_pred cceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEcCCcHHHHHHHHH
Confidence 5799999999999842333322 2223332 34 6778889999887 68999999998877776655
Q ss_pred hccccCCCCEEEEecC-CCcHHHHHhh
Q psy6714 196 IKPVFNESNLLISVAG-GVPIKNMEQA 221 (303)
Q Consensus 196 I~~~L~~g~IVVSiaa-GV~ie~L~~~ 221 (303)
.. ..|+-|+.-.- +.+.+..+++
T Consensus 85 al---~aGkhVl~EKPla~~~~e~~~l 108 (358)
T 3gdo_A 85 CI---QAGKHVVMEKPMTATAEEGETL 108 (358)
T ss_dssp HH---HTTCEEEEESSCCSSHHHHHHH
T ss_pred HH---HcCCeEEEecCCcCCHHHHHHH
Confidence 43 35565553221 3455555443
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00044 Score=64.20 Aligned_cols=99 Identities=15% Similarity=0.167 Sum_probs=59.4
Q ss_pred CcEEEEcCChhhHHHHHHHH------------hhcHHHH----hh--------CCCeEecChHHhhcCCCEEEEeeC-Cc
Q psy6714 133 SDKQIAGTTERGPGALIASL------------NIVSKAT----GT--------MGAKITFDNKEVTLNSEVIILAVK-PH 187 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al------------~r~~e~l----~e--------~Gv~v~~d~~eav~~ADIVILAVp-P~ 187 (303)
|||+|||+|.||.+ ++..+ +...+++ .+ ....+..+..+++++||+||++++ |.
T Consensus 1 mkI~VIGaG~vG~~-la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~~aDvVIi~~~~~~ 79 (304)
T 2v6b_A 1 MKVGVVGTGFVGST-AAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELADAQVVILTAGANQ 79 (304)
T ss_dssp CEEEEECCSHHHHH-HHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGTTCSEEEECC----
T ss_pred CEEEEECCCHHHHH-HHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence 79999999999994 54332 1111211 11 122333233567899999999995 32
Q ss_pred ---------------cHHHHHHhhccccCCCCEEEEecCCCcHH--HHHhhCCCCCceEEEecC
Q psy6714 188 ---------------IVPVALNDIKPVFNESNLLISVAGGVPIK--NMEQALPKNSRIIRAMPN 234 (303)
Q Consensus 188 ---------------~v~~VL~eI~~~L~~g~IVVSiaaGV~ie--~L~~~l~~~~~VVr~mPn 234 (303)
.+.++++++.++ .++.+||...+++... .+.+.++. .+++.+...
T Consensus 80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tNP~~~~~~~~~~~~~~-~rviG~gt~ 141 (304)
T 2v6b_A 80 KPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPVDLLTDLATQLAPG-QPVIGSGTV 141 (304)
T ss_dssp --------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSSSHHHHHHHHHHHSCS-SCEEECTTH
T ss_pred CCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecCchHHHHHHHHHhCCh-hcEEeCCcC
Confidence 236777777776 4677777677777653 35555553 467666444
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.001 Score=62.19 Aligned_cols=87 Identities=5% Similarity=-0.033 Sum_probs=54.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHh------------hcHHHHh-hC-CCeEecChHHhhcC--CCEEEEeeCCccHHHHHHh
Q psy6714 132 RSDKQIAGTTERGPGALIASLN------------IVSKATG-TM-GAKITFDNKEVTLN--SEVIILAVKPHIVPVALND 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~------------r~~e~l~-e~-Gv~v~~d~~eav~~--ADIVILAVpP~~v~~VL~e 195 (303)
++||||||+|.||....+..+. +..+++. .. ++.+..|..+++++ .|+|++|+|+..-.+++..
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~ 86 (352)
T 3kux_A 7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLAQS 86 (352)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHHHH
Confidence 4789999999999842333322 2223333 22 56778899998875 8999999997776666654
Q ss_pred hccccCCCCEEEEecC-CCcHHHHHhh
Q psy6714 196 IKPVFNESNLLISVAG-GVPIKNMEQA 221 (303)
Q Consensus 196 I~~~L~~g~IVVSiaa-GV~ie~L~~~ 221 (303)
.. ..|+-|+.-.- +.+.+..+++
T Consensus 87 al---~aGkhV~~EKPla~~~~e~~~l 110 (352)
T 3kux_A 87 AL---AAGKHVVVDKPFTVTLSQANAL 110 (352)
T ss_dssp HH---HTTCEEEECSSCCSCHHHHHHH
T ss_pred HH---HCCCcEEEECCCcCCHHHHHHH
Confidence 43 35555553322 3555555443
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00081 Score=63.27 Aligned_cols=87 Identities=11% Similarity=-0.007 Sum_probs=55.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHh------------hcHHHHh-hC-CCeEecChHHhhcC--CCEEEEeeCCccHHHHHHh
Q psy6714 132 RSDKQIAGTTERGPGALIASLN------------IVSKATG-TM-GAKITFDNKEVTLN--SEVIILAVKPHIVPVALND 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~------------r~~e~l~-e~-Gv~v~~d~~eav~~--ADIVILAVpP~~v~~VL~e 195 (303)
++||||||+|.||....+..+. +..+++. ++ ++.+..|.++++++ .|+|++|+|+..-.+++..
T Consensus 5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~ 84 (362)
T 3fhl_A 5 IIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKERYPQASIVRSFKELTEDPEIDLIVVNTPDNTHYEYAGM 84 (362)
T ss_dssp CEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGTTCTTSEEESCSHHHHTCTTCCEEEECSCGGGHHHHHHH
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHHhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHHHH
Confidence 5799999999999832232221 1222332 34 67788899998876 8999999998776666655
Q ss_pred hccccCCCCEEEEecC-CCcHHHHHhh
Q psy6714 196 IKPVFNESNLLISVAG-GVPIKNMEQA 221 (303)
Q Consensus 196 I~~~L~~g~IVVSiaa-GV~ie~L~~~ 221 (303)
.. ..|+-|+.-.- +.+.+..+++
T Consensus 85 al---~aGkhVl~EKP~a~~~~ea~~l 108 (362)
T 3fhl_A 85 AL---EAGKNVVVEKPFTSTTKQGEEL 108 (362)
T ss_dssp HH---HTTCEEEEESSCCSSHHHHHHH
T ss_pred HH---HCCCeEEEecCCCCCHHHHHHH
Confidence 43 24555553221 3455555544
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00063 Score=62.63 Aligned_cols=84 Identities=5% Similarity=-0.013 Sum_probs=51.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh------------cHH---H-HhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHh
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI------------VSK---A-TGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r------------~~e---~-l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~e 195 (303)
+|||||||+|.||...++..+.. ..+ . ..++|+....+.+++..++|+|++|+|+....+++..
T Consensus 5 ~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~ 84 (319)
T 1tlt_A 5 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVST 84 (319)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHHHHHH
Confidence 57899999999998324433221 111 2 2345776556666665689999999998877777655
Q ss_pred hccccCCCCEEEEe-cCCCcHHHH
Q psy6714 196 IKPVFNESNLLISV-AGGVPIKNM 218 (303)
Q Consensus 196 I~~~L~~g~IVVSi-aaGV~ie~L 218 (303)
.. ..|+-|+.- --+.+.+..
T Consensus 85 al---~~G~~v~~eKP~~~~~~~~ 105 (319)
T 1tlt_A 85 LL---NAGVHVCVDKPLAENLRDA 105 (319)
T ss_dssp HH---HTTCEEEEESSSCSSHHHH
T ss_pred HH---HcCCeEEEeCCCCCCHHHH
Confidence 43 345544422 123445443
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00072 Score=64.55 Aligned_cols=146 Identities=12% Similarity=0.123 Sum_probs=82.5
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhcH-----H--------------HHhh----C----CCeEecChHHhhcCCCEEEEe
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIVS-----K--------------ATGT----M----GAKITFDNKEVTLNSEVIILA 183 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~~-----e--------------~l~e----~----Gv~v~~d~~eav~~ADIVILA 183 (303)
||||+|+| +|.+|. .|...+.... . .+.. + .+.+..-..+.+.++|+||+|
T Consensus 9 m~kVaIvGATG~vG~-~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~a 87 (352)
T 2nqt_A 9 ATKVAVAGASGYAGG-EILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAAVLGGHDAVFLA 87 (352)
T ss_dssp CEEEEEETTTSHHHH-HHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHHHHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHH-HHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCHHHhcCCCEEEEC
Confidence 57999999 999999 4555433222 1 0110 0 111111113345689999999
Q ss_pred eCCccHHHHHHhhccccCCCCEEEEecCCCcH---HHHHhhCCCCCc--eEEEecCc--H-HhhhCCcEEEEeCCCCCHH
Q psy6714 184 VKPHIVPVALNDIKPVFNESNLLISVAGGVPI---KNMEQALPKNSR--IIRAMPNT--P-ALVRQGASVFVRGSSASDQ 255 (303)
Q Consensus 184 VpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~i---e~L~~~l~~~~~--VVr~mPn~--p-~~v~~G~til~~g~~~~~e 255 (303)
++.....+++..+ . .|..||++.+.... +..+++.+.... ++..+|-. . ..+.+. .+ +..+++...
T Consensus 88 lg~~~s~~~~~~~-~---~G~~vIDlSa~~R~~~~~~~~~~y~~~h~~~~vyglPEv~~n~~~i~~~-~i-IanPgC~tt 161 (352)
T 2nqt_A 88 LPHGHSAVLAQQL-S---PETLIIDCGADFRLTDAAVWERFYGSSHAGSWPYGLPELPGARDQLRGT-RR-IAVPGCYPT 161 (352)
T ss_dssp CTTSCCHHHHHHS-C---TTSEEEECSSTTTCSCHHHHHHHHSSCCCCCCCBSCTTSTTHHHHHTTC-SE-EECCCHHHH
T ss_pred CCCcchHHHHHHH-h---CCCEEEEECCCccCCcchhhhhhccccCCCCeeEEecccccCHHHHhcC-CE-EEcCCHHHH
Confidence 9988888887766 3 56788887766532 456666653233 47777776 3 334432 33 334445544
Q ss_pred H-HHHHHHHHHhcCCcEEcCCCCchhhhhhccc
Q psy6714 256 D-AQTVINLFKSVGTCEEVPEYLLDGITGLSGS 287 (303)
Q Consensus 256 ~-~e~V~~Lfs~iG~~v~vdE~~~Da~tAlsGs 287 (303)
. .-.+..|++..|.... -.++...++||.
T Consensus 162 ~~~lal~PL~~~~~i~~~---i~v~t~~g~SGa 191 (352)
T 2nqt_A 162 AALLALFPALAADLIEPA---VTVVAVSGTSGA 191 (352)
T ss_dssp HHHHHHHHHHHTTCSCSE---EEEEEEECGGGG
T ss_pred HHHHHHHHHHHcCCCcce---EEEEEEeccccC
Confidence 4 3456666666554311 234445555554
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00057 Score=63.56 Aligned_cols=73 Identities=5% Similarity=-0.025 Sum_probs=48.3
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcHHH----HhhCCC-eEecChHHhhc--CCCEEEEeeCCccHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVSKA----TGTMGA-KITFDNKEVTL--NSEVIILAVKPHIVPVA 192 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~e~----l~e~Gv-~v~~d~~eav~--~ADIVILAVpP~~v~~V 192 (303)
|+||||||+|.||...++..+ +++.++ .+++|+ .+..|.+++++ +.|+|++|+|+..=.++
T Consensus 23 mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~H~~~ 102 (350)
T 4had_A 23 MLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQHIEW 102 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGGHHHH
T ss_pred ccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCchhHHH
Confidence 689999999999972233222 122222 346787 57788999885 47999999997776666
Q ss_pred HHhhccccCCCCEEE
Q psy6714 193 LNDIKPVFNESNLLI 207 (303)
Q Consensus 193 L~eI~~~L~~g~IVV 207 (303)
+..... .|+-|+
T Consensus 103 ~~~al~---aGkhVl 114 (350)
T 4had_A 103 SIKAAD---AGKHVV 114 (350)
T ss_dssp HHHHHH---TTCEEE
T ss_pred HHHHHh---cCCEEE
Confidence 544332 455444
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00013 Score=69.53 Aligned_cols=78 Identities=12% Similarity=0.123 Sum_probs=49.1
Q ss_pred CCCcEEEEcCChhhHHHHHHHH------------hhcHHH---Hh-hC----CC--eEecChHHhhcCCCEEEEeeCCcc
Q psy6714 131 NRSDKQIAGTTERGPGALIASL------------NIVSKA---TG-TM----GA--KITFDNKEVTLNSEVIILAVKPHI 188 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al------------~r~~e~---l~-e~----Gv--~v~~d~~eav~~ADIVILAVpP~~ 188 (303)
..++|+|||+|.||..+ +..+ +++.++ +. ++ |+ .++.+.+++++++|+||+|++...
T Consensus 128 ~~~~v~iIGaG~~a~~~-a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~ 206 (350)
T 1x7d_A 128 NARKMALIGNGAQSEFQ-ALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA 206 (350)
T ss_dssp TCCEEEEECCSTTHHHH-HHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS
T ss_pred cCCeEEEECCcHHHHHH-HHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC
Confidence 35689999999999953 3221 222222 22 21 64 456788899999999999999763
Q ss_pred HHHHHHhhccccCCCCEEEEecCC
Q psy6714 189 VPVALNDIKPVFNESNLLISVAGG 212 (303)
Q Consensus 189 v~~VL~eI~~~L~~g~IVVSiaaG 212 (303)
...++. ...++++++|+ .++.
T Consensus 207 ~~pvl~--~~~l~~G~~V~-~vgs 227 (350)
T 1x7d_A 207 YATIIT--PDMLEPGMHLN-AVGG 227 (350)
T ss_dssp EEEEEC--GGGCCTTCEEE-ECSC
T ss_pred CCceec--HHHcCCCCEEE-ECCC
Confidence 223332 23567888766 4444
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.003 Score=59.24 Aligned_cols=118 Identities=15% Similarity=0.297 Sum_probs=82.9
Q ss_pred hCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHHHhhccccCCCCEEEEecCCCcHHHHHhhC---C-CCCceEEEecCc
Q psy6714 161 TMGAKITFDNKEVTLNSEVIILAVKPH-IVPVALNDIKPVFNESNLLISVAGGVPIKNMEQAL---P-KNSRIIRAMPNT 235 (303)
Q Consensus 161 e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l---~-~~~~VVr~mPn~ 235 (303)
+.|+++++|..|+++++|++|+=+|-- .-.++++.+.++++.|.+|-+++ -++.-.|...| . .+..|..+||..
T Consensus 126 daGVkVtsDD~EAvk~AEi~IlftPfG~~t~~Iakkii~~lpEgAII~nTC-Tipp~~ly~~le~l~R~DvgIsS~HPaa 204 (358)
T 2b0j_A 126 DVGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHAC-TIPTTKFAKIFKDLGREDLNITSYHPGC 204 (358)
T ss_dssp GGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECS-SSCHHHHHHHHHHTTCTTSEEEECBCSS
T ss_pred HcCcEeecchHHHhcCCCEEEEecCCCCCcHHHHHHHHhhCcCCCEEeccc-CCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 569999999999999999999999844 47789999999998898766554 46554444433 2 344566666542
Q ss_pred -HHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCC-cEEcCCCCchhhh
Q psy6714 236 -PALVRQGASVFVRGSSASDQDAQTVINLFKSVGT-CEEVPEYLLDGIT 282 (303)
Q Consensus 236 -p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~-~v~vdE~~~Da~t 282 (303)
|.. .|.+.+-- .-.++++++.+.+|.++.|+ .|.++.+....+.
T Consensus 205 VPgt--~Gq~~~g~-~yAtEEqIeklveLaksa~k~ay~vPAdl~SpV~ 250 (358)
T 2b0j_A 205 VPEM--KGQVYIAE-GYASEEAVNKLYEIGKIARGKAFKMPANLIGPVC 250 (358)
T ss_dssp CTTT--CCCEEEEE-SSSCHHHHHHHHHHHHHHHSCEEEEEHHHHHHHH
T ss_pred CCCC--CCcccccc-ccCCHHHHHHHHHHHHHhCCCeEecchhhccchh
Confidence 333 34443332 34589999999999999987 5667764443333
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0029 Score=58.61 Aligned_cols=87 Identities=9% Similarity=0.026 Sum_probs=52.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHh-----------hcH---HH-HhhC-CCeEecChHHhhc--CCCEEEEeeCCccHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLN-----------IVS---KA-TGTM-GAKITFDNKEVTL--NSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~-----------r~~---e~-l~e~-Gv~v~~d~~eav~--~ADIVILAVpP~~v~~VL 193 (303)
++||||||+|.||...++..+. ++. +. .+++ ++.+..|..++++ +.|+|++|+|+..-.+++
T Consensus 4 ~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~ 83 (336)
T 2p2s_A 4 KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAELA 83 (336)
T ss_dssp CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHHHH
T ss_pred ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHHHH
Confidence 5799999999999622333221 111 12 2345 5667788888886 689999999977766666
Q ss_pred HhhccccCCCCEEEEec-CCCcHHHHHhh
Q psy6714 194 NDIKPVFNESNLLISVA-GGVPIKNMEQA 221 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSia-aGV~ie~L~~~ 221 (303)
.... ..|+-|+.-. -..+.+..+++
T Consensus 84 ~~al---~aGkhVl~EKP~a~~~~e~~~l 109 (336)
T 2p2s_A 84 LRTL---DAGKDFFTAKPPLTTLEQLDAV 109 (336)
T ss_dssp HHHH---HTTCEEEECSSCCSCHHHHHHH
T ss_pred HHHH---HCCCcEEEeCCCCCCHHHHHHH
Confidence 5433 2455444221 13444544443
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0002 Score=66.15 Aligned_cols=83 Identities=19% Similarity=0.148 Sum_probs=56.8
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhcHH------------H--------Hh--hCCCeEecChHHhhcCCCEEEEeeCCcc
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIVSK------------A--------TG--TMGAKITFDNKEVTLNSEVIILAVKPHI 188 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~~e------------~--------l~--e~Gv~v~~d~~eav~~ADIVILAVpP~~ 188 (303)
||||+|+| +|.||. .++..+....+ . +. ..|+.+..|..++++++|+||-+++|..
T Consensus 7 mikV~V~Ga~G~MG~-~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~p~a 85 (272)
T 4f3y_A 7 SMKIAIAGASGRMGR-MLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTLPEG 85 (272)
T ss_dssp CEEEEESSTTSHHHH-HHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSCHHH
T ss_pred ccEEEEECCCCHHHH-HHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCCHHH
Confidence 68999999 999999 56655332211 0 00 1156667788888889999999999998
Q ss_pred HHHHHHhhccccCCCCEEEEecCCCcHHHH
Q psy6714 189 VPVALNDIKPVFNESNLLISVAGGVPIKNM 218 (303)
Q Consensus 189 v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L 218 (303)
+.+.+..... .+.-+|....|.+.+.+
T Consensus 86 ~~~~~~~al~---~G~~vVigTTG~s~~~~ 112 (272)
T 4f3y_A 86 TLVHLDAALR---HDVKLVIGTTGFSEPQK 112 (272)
T ss_dssp HHHHHHHHHH---HTCEEEECCCCCCHHHH
T ss_pred HHHHHHHHHH---cCCCEEEECCCCCHHHH
Confidence 8887766543 34445555567876543
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00022 Score=58.29 Aligned_cols=75 Identities=12% Similarity=0.138 Sum_probs=48.0
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHHH----HhhCCCe--EecChHHhhcCCCEEEEeeCCccHHHHHHh
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSKA----TGTMGAK--ITFDNKEVTLNSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e~----l~e~Gv~--v~~d~~eav~~ADIVILAVpP~~v~~VL~e 195 (303)
.++|+|||+|.||. .++..+ ++..++ ..++|+. ...+..++++++|+||.|++.... ++.
T Consensus 21 ~~~v~iiG~G~iG~-~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~~~--~~~- 96 (144)
T 3oj0_A 21 GNKILLVGNGMLAS-EIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSKTP--IVE- 96 (144)
T ss_dssp CCEEEEECCSHHHH-HHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCSSC--SBC-
T ss_pred CCEEEEECCCHHHH-HHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCCCc--Eee-
Confidence 57899999999999 454432 222222 2345654 345677888999999999985521 111
Q ss_pred hccccCCCCEEEEecC
Q psy6714 196 IKPVFNESNLLISVAG 211 (303)
Q Consensus 196 I~~~L~~g~IVVSiaa 211 (303)
...++++.+|+.+..
T Consensus 97 -~~~l~~g~~vid~~~ 111 (144)
T 3oj0_A 97 -ERSLMPGKLFIDLGN 111 (144)
T ss_dssp -GGGCCTTCEEEECCS
T ss_pred -HHHcCCCCEEEEccC
Confidence 234567777776643
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.003 Score=60.81 Aligned_cols=86 Identities=13% Similarity=0.140 Sum_probs=53.7
Q ss_pred CCcEEEEcCCh---hhHHHHHHHH-------------hhcHHH----HhhCCC---eEecChHHhhcC-------CCEEE
Q psy6714 132 RSDKQIAGTTE---RGPGALIASL-------------NIVSKA----TGTMGA---KITFDNKEVTLN-------SEVII 181 (303)
Q Consensus 132 ~mkIgIIGlG~---MG~~~La~al-------------~r~~e~----l~e~Gv---~v~~d~~eav~~-------ADIVI 181 (303)
++||||||+|. ||.. .+..+ ++..++ .+++|+ .+..|.++++++ .|+|+
T Consensus 37 ~~rvgiiG~G~~~~ig~~-h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~ 115 (417)
T 3v5n_A 37 RIRLGMVGGGSGAFIGAV-HRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVA 115 (417)
T ss_dssp CEEEEEESCC--CHHHHH-HHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEE
T ss_pred cceEEEEcCCCchHHHHH-HHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEE
Confidence 46899999999 9972 22221 112222 235687 577888888865 89999
Q ss_pred EeeCCccHHHHHHhhccccCCCCEEEEec-CCCcHHHHHhh
Q psy6714 182 LAVKPHIVPVALNDIKPVFNESNLLISVA-GGVPIKNMEQA 221 (303)
Q Consensus 182 LAVpP~~v~~VL~eI~~~L~~g~IVVSia-aGV~ie~L~~~ 221 (303)
+|+|+..-.+++.... ..|+-|+.-. -+.+.+..+++
T Consensus 116 I~tp~~~H~~~~~~al---~aGkhVl~EKPla~~~~ea~~l 153 (417)
T 3v5n_A 116 IVTPNHVHYAAAKEFL---KRGIHVICDKPLTSTLADAKKL 153 (417)
T ss_dssp ECSCTTSHHHHHHHHH---TTTCEEEEESSSCSSHHHHHHH
T ss_pred ECCCcHHHHHHHHHHH---hCCCeEEEECCCcCCHHHHHHH
Confidence 9999887777765543 3566565332 13455555544
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0015 Score=61.97 Aligned_cols=147 Identities=13% Similarity=0.181 Sum_probs=82.2
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhcH----------H-------H-------HhhC-CCeEec--ChHHhhcCCCEEEEe
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIVS----------K-------A-------TGTM-GAKITF--DNKEVTLNSEVIILA 183 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~~----------e-------~-------l~e~-Gv~v~~--d~~eav~~ADIVILA 183 (303)
||||+|+| +|.+|. .|...+.... + . +... .+.+.. +..++++++|+||+|
T Consensus 4 M~kv~IvGatG~vG~-~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a 82 (337)
T 3dr3_A 4 MLNTLIVGASGYAGA-ELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLA 82 (337)
T ss_dssp CEEEEEETTTSHHHH-HHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEEC
T ss_pred ceEEEEECCCChHHH-HHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEEC
Confidence 68999999 799999 4554432211 0 1 1111 223322 444444899999999
Q ss_pred eCCccHHHHHHhhccccCCCCEEEEecCCC---cHHHHHhhCCCCC-------ceEEEecCcH-HhhhCCcEEEEeCCCC
Q psy6714 184 VKPHIVPVALNDIKPVFNESNLLISVAGGV---PIKNMEQALPKNS-------RIIRAMPNTP-ALVRQGASVFVRGSSA 252 (303)
Q Consensus 184 VpP~~v~~VL~eI~~~L~~g~IVVSiaaGV---~ie~L~~~l~~~~-------~VVr~mPn~p-~~v~~G~til~~g~~~ 252 (303)
+|...-.+++..+. ..|..||+..+.. +.+...++.+... .+|..+|-.. ..+... .+ +..+++
T Consensus 83 ~p~~~s~~~~~~~~---~~g~~vIDlSa~fR~~d~~v~~~wy~~~~~~p~l~~~~vyglPEvn~~~i~~~-~i-IanPgC 157 (337)
T 3dr3_A 83 TAHEVSHDLAPQFL---EAGCVVFDLSGAFRVNDATFYEKYYGFTHQYPELLEQAAYGLAEWCGNKLKEA-NL-IAVPGC 157 (337)
T ss_dssp SCHHHHHHHHHHHH---HTTCEEEECSSTTSSSCHHHHHHHTSSCCSCHHHHHHCEECCTTTCCHHHHTC-SE-EECCCH
T ss_pred CChHHHHHHHHHHH---HCCCEEEEcCCccccCCcccchhhccccccChhhhcceEEEccccCHHHhCCC-CE-EecCCh
Confidence 99888788877654 3677899888775 3344445543211 2466676553 233332 23 344556
Q ss_pred CHHHHHHH-HHHHH--hcCCcEEcCCC-Cchhhhhhccch
Q psy6714 253 SDQDAQTV-INLFK--SVGTCEEVPEY-LLDGITGLSGSG 288 (303)
Q Consensus 253 ~~e~~e~V-~~Lfs--~iG~~v~vdE~-~~Da~tAlsGsg 288 (303)
.......+ ..|.+ .+|. +.- .++...++||.|
T Consensus 158 ~tt~~~l~L~PL~~~g~~~~----~~i~~v~t~~g~SGaG 193 (337)
T 3dr3_A 158 YPTAAQLALKPLIDADLLDL----NQWPVINATSGVSGAG 193 (337)
T ss_dssp HHHHHHHHHHHHHHTTCBCT----TSCCEEEEEECGGGGC
T ss_pred HHHHHHHHHHHHHHcCccCC----CceEEEEEeeccccCC
Confidence 66555544 44554 2442 222 345555555544
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00078 Score=63.49 Aligned_cols=86 Identities=8% Similarity=-0.004 Sum_probs=53.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHh------------hcHHHH----hhC-CCeEecChHHhhcC--CCEEEEeeCCccHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLN------------IVSKAT----GTM-GAKITFDNKEVTLN--SEVIILAVKPHIVPVA 192 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~------------r~~e~l----~e~-Gv~v~~d~~eav~~--ADIVILAVpP~~v~~V 192 (303)
++||||||+|.||...++..+. ++.+++ .++ +..+..|.++++++ .|+|++|+|+..-.++
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~ 84 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHFEM 84 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHHHHH
Confidence 4689999999999832443332 222222 233 45677889998874 5999999998877777
Q ss_pred HHhhccccCCCCEEEEec-CCCcHHHHHh
Q psy6714 193 LNDIKPVFNESNLLISVA-GGVPIKNMEQ 220 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSia-aGV~ie~L~~ 220 (303)
+.... ..|+-|+.-. -..+.+..++
T Consensus 85 ~~~al---~aGkhVl~EKPla~~~~e~~~ 110 (359)
T 3m2t_A 85 GLLAM---SKGVNVFVEKPPCATLEELET 110 (359)
T ss_dssp HHHHH---HTTCEEEECSCSCSSHHHHHH
T ss_pred HHHHH---HCCCeEEEECCCcCCHHHHHH
Confidence 65543 3455555321 1344444443
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00032 Score=65.04 Aligned_cols=72 Identities=11% Similarity=0.060 Sum_probs=44.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhc------------HHHHhhCCCe--EecChHHhhcCCCEEEEeeCCccHHHHHHhhc
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIV------------SKATGTMGAK--ITFDNKEVTLNSEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~------------~e~l~e~Gv~--v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~ 197 (303)
++||||||+|+||. .++..+.+. .++++..|+. ...+..+. .++|+||+|+|+..-.+++....
T Consensus 9 ~irv~IIG~G~iG~-~~~~~l~~~~~~elvav~d~~~~~~~~~g~~~~~~~~l~~~-~~~DvViiatp~~~h~~~~~~al 86 (304)
T 3bio_A 9 KIRAAIVGYGNIGR-YALQALREAPDFEIAGIVRRNPAEVPFELQPFRVVSDIEQL-ESVDVALVCSPSREVERTALEIL 86 (304)
T ss_dssp CEEEEEECCSHHHH-HHHHHHHHCTTEEEEEEECC-------CCTTSCEESSGGGS-SSCCEEEECSCHHHHHHHHHHHH
T ss_pred CCEEEEECChHHHH-HHHHHHhcCCCCEEEEEEcCCHHHHHHcCCCcCCHHHHHhC-CCCCEEEECCCchhhHHHHHHHH
Confidence 47899999999999 455544321 2233334543 23344443 68999999999887777765543
Q ss_pred cccCCCCEEEE
Q psy6714 198 PVFNESNLLIS 208 (303)
Q Consensus 198 ~~L~~g~IVVS 208 (303)
..|+-||.
T Consensus 87 ---~aG~~Vi~ 94 (304)
T 3bio_A 87 ---KKGICTAD 94 (304)
T ss_dssp ---TTTCEEEE
T ss_pred ---HcCCeEEE
Confidence 35666663
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0024 Score=52.62 Aligned_cols=84 Identities=10% Similarity=-0.041 Sum_probs=51.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh----------cHHH---Hh-hCCCeEe-cC---h---HHh-hcCCCEEEEeeCCcc
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI----------VSKA---TG-TMGAKIT-FD---N---KEV-TLNSEVIILAVKPHI 188 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r----------~~e~---l~-e~Gv~v~-~d---~---~ea-v~~ADIVILAVpP~~ 188 (303)
..++|.|+|+|.||. .++..+.. ..++ +. ..|+.+. .+ . .++ ++++|+||+|++...
T Consensus 18 ~~~~v~IiG~G~iG~-~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~ 96 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGS-LIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDS 96 (155)
T ss_dssp CCCEEEEECCSHHHH-HHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHH
T ss_pred CCCcEEEECCCHHHH-HHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcH
Confidence 357899999999999 56655322 2222 33 4566432 22 1 122 567999999999877
Q ss_pred HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 189 VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 189 v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
....+..+...+.+...||..+.+...
T Consensus 97 ~~~~~~~~~~~~~~~~~iv~~~~~~~~ 123 (155)
T 2g1u_A 97 TNFFISMNARYMFNVENVIARVYDPEK 123 (155)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECSSGGG
T ss_pred HHHHHHHHHHHHCCCCeEEEEECCHHH
Confidence 666655554443345556666655544
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00081 Score=66.31 Aligned_cols=97 Identities=12% Similarity=0.222 Sum_probs=60.2
Q ss_pred CCcEEEEcCChhh-HHHHHHHH-------------hhcHHHHh----------h--CCCeEecChHHhhcCCCEEEEeeC
Q psy6714 132 RSDKQIAGTTERG-PGALIASL-------------NIVSKATG----------T--MGAKITFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG-~~~La~al-------------~r~~e~l~----------e--~Gv~v~~d~~eav~~ADIVILAVp 185 (303)
+|||+|||.|.|| +..|+..+ +...+++. . ..+..++|..+++++||+||++++
T Consensus 5 ~~KIaVIGaGs~g~g~~la~~l~~~~~~~geV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~air 84 (450)
T 3fef_A 5 QIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIISIL 84 (450)
T ss_dssp CEEEEEETTTCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCChhHhHHHHHHHHHhccccCCeEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEeccc
Confidence 4799999999996 22343221 11122211 0 124566788899999999999997
Q ss_pred Ccc--------------------------------------HHHHHHhhccccCCCCEEEEecCCCcH--HHHHhhCCCC
Q psy6714 186 PHI--------------------------------------VPVALNDIKPVFNESNLLISVAGGVPI--KNMEQALPKN 225 (303)
Q Consensus 186 P~~--------------------------------------v~~VL~eI~~~L~~g~IVVSiaaGV~i--e~L~~~l~~~ 225 (303)
+.. +.++++.+..+ .++.++|..++++++ ..+.+.+|.
T Consensus 85 vG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~-~p~a~~i~~tNPvdi~t~~~~k~~p~- 162 (450)
T 3fef_A 85 PGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDY-APESWVINYTNPMSVCTRVLYKVFPG- 162 (450)
T ss_dssp SSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHHCTT-
T ss_pred cCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHH-CCCeEEEEecCchHHHHHHHHHHCCC-
Confidence 641 44555556554 367788888888876 334555663
Q ss_pred CceEE
Q psy6714 226 SRIIR 230 (303)
Q Consensus 226 ~~VVr 230 (303)
.+++.
T Consensus 163 ~rviG 167 (450)
T 3fef_A 163 IKAIG 167 (450)
T ss_dssp CEEEE
T ss_pred CCEEE
Confidence 35543
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00096 Score=62.26 Aligned_cols=100 Identities=11% Similarity=0.109 Sum_probs=57.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHh------------hcHHH-------Hh----hC--CCeEecChHHhhcCCCEEEEeeCC
Q psy6714 132 RSDKQIAGTTERGPGALIASLN------------IVSKA-------TG----TM--GAKITFDNKEVTLNSEVIILAVKP 186 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~------------r~~e~-------l~----e~--Gv~v~~d~~eav~~ADIVILAVpP 186 (303)
+|||+|||+|.||.+ ++..+. ...++ +. .. .+.+..+..+++++||+||++.+.
T Consensus 6 ~~kI~IIGaG~vG~s-la~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~ 84 (316)
T 1ldn_A 6 GARVVVIGAGFVGAS-YVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGA 84 (316)
T ss_dssp SCEEEEECCSHHHHH-HHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSC
T ss_pred CCEEEEECcCHHHHH-HHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCC
Confidence 579999999999994 554321 11111 11 11 344445556789999999999753
Q ss_pred cc----------------HHHHHHhhccccCCCCEEEEecCCCcHH--HHHhh--CCCCCceEEEecC
Q psy6714 187 HI----------------VPVALNDIKPVFNESNLLISVAGGVPIK--NMEQA--LPKNSRIIRAMPN 234 (303)
Q Consensus 187 ~~----------------v~~VL~eI~~~L~~g~IVVSiaaGV~ie--~L~~~--l~~~~~VVr~mPn 234 (303)
.. +.++++.+..+. ++.+++-..++++.- .+.+. ++. .+++.++.+
T Consensus 85 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~tNPv~~~~~~~~~~s~~p~-~rviG~gt~ 150 (316)
T 1ldn_A 85 NQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPVDILTYATWKFSGLPH-ERVIGSGTI 150 (316)
T ss_dssp CCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHHHHHHHHHHHHTCCG-GGEEECTTH
T ss_pred CCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeCCchHHHHHHHHHHhCCCH-HHEEecccc
Confidence 32 345555666554 555555466666542 23333 332 356666443
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00041 Score=64.51 Aligned_cols=95 Identities=21% Similarity=0.219 Sum_probs=54.4
Q ss_pred CcEEEEcCChhhHHHHHHHHhh------------cHHH-------Hhh------CC--CeEecChHHhhcCCCEEEEeeC
Q psy6714 133 SDKQIAGTTERGPGALIASLNI------------VSKA-------TGT------MG--AKITFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~r------------~~e~-------l~e------~G--v~v~~d~~eav~~ADIVILAVp 185 (303)
|||+|||+|.||.+ ++..+.. ..++ +.. .. +..+.+..+ +++||+||+|++
T Consensus 1 mkI~VIGaG~vG~~-la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~ 78 (310)
T 1guz_A 1 MKITVIGAGNVGAT-TAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAG 78 (310)
T ss_dssp CEEEEECCSHHHHH-HHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCS
T ss_pred CEEEEECCCHHHHH-HHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCC
Confidence 79999999999994 5443211 1111 111 12 233456555 899999999995
Q ss_pred Cc----------------cHHHHHHhhccccCCCCEEEEecCCCcHH--HHHhh--CCCCCceEEE
Q psy6714 186 PH----------------IVPVALNDIKPVFNESNLLISVAGGVPIK--NMEQA--LPKNSRIIRA 231 (303)
Q Consensus 186 P~----------------~v~~VL~eI~~~L~~g~IVVSiaaGV~ie--~L~~~--l~~~~~VVr~ 231 (303)
.. .+.++++.+.++. ++.+||...+++..- .+.+. ++. .+++..
T Consensus 79 ~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~~~~~~~~~~~~~~~~-~rviG~ 142 (310)
T 1guz_A 79 LPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSNPLDIMTHVAWVRSGLPK-ERVIGM 142 (310)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCSSHHHHHHHHHHHHCSCG-GGEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEcCchHHHHHHHHHhcCCCh-HHEEEC
Confidence 21 1245556666664 555666677766542 23332 442 356655
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0025 Score=63.57 Aligned_cols=152 Identities=10% Similarity=0.108 Sum_probs=83.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCCcc-HH-HHHHhh
Q psy6714 132 RSDKQIAGTTERGPGALIASLN----------IVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKPHI-VP-VALNDI 196 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~-v~-~VL~eI 196 (303)
.++|+|||+|.||. .++..++ .... .+.+.|+.+ .+..++++.+|+||+|+.... +. +.+.
T Consensus 274 GktV~IiG~G~IG~-~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~-~~l~e~l~~aDvVi~atgt~~~i~~~~l~-- 349 (494)
T 3ce6_A 274 GKKVLICGYGDVGK-GCAEAMKGQGARVSVTEIDPINALQAMMEGFDV-VTVEEAIGDADIVVTATGNKDIIMLEHIK-- 349 (494)
T ss_dssp TCEEEEECCSHHHH-HHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECSSSSCSBCHHHHH--
T ss_pred cCEEEEEccCHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEE-ecHHHHHhCCCEEEECCCCHHHHHHHHHH--
Confidence 57899999999999 4554432 2222 345678864 567788899999999997544 33 3333
Q ss_pred ccccCCCCEEEEecCC---CcHHHHHh-hCCCCCce---EE--EecC--cHH-hhhCCcEE-EE-eCCCC--------CH
Q psy6714 197 KPVFNESNLLISVAGG---VPIKNMEQ-ALPKNSRI---IR--AMPN--TPA-LVRQGASV-FV-RGSSA--------SD 254 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaG---V~ie~L~~-~l~~~~~V---Vr--~mPn--~p~-~v~~G~ti-l~-~g~~~--------~~ 254 (303)
.++++.+||.+.-+ ++...|.. .+.. ..+ +. ..|. .+. .+..|... +. ..++. ..
T Consensus 350 --~mk~ggilvnvG~~~~eId~~aL~~~aL~~-~~I~~~ldv~~~~~~~~~l~LL~~grlvnL~~~TPH~a~~~~~s~~~ 426 (494)
T 3ce6_A 350 --AMKDHAILGNIGHFDNEIDMAGLERSGATR-VNVKPQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNSFAN 426 (494)
T ss_dssp --HSCTTCEEEECSSSGGGBCHHHHHHTTCEE-EEEETTEEEEECTTTCCEEEEEGGGSCHHHHHSCCSCHHHHHHHHHH
T ss_pred --hcCCCcEEEEeCCCCCccCHHHHHHhhhcc-ceEEEEEEEeecCCcchHHHHHhCCCEEeccCCCCCccccchHHHHH
Confidence 35577777755322 34445544 2311 011 11 1121 110 01111110 00 00111 12
Q ss_pred HHHHHHHHHHH--hcCCcEEcCCCCchhhhhhccchHHH
Q psy6714 255 QDAQTVINLFK--SVGTCEEVPEYLLDGITGLSGSGPAY 291 (303)
Q Consensus 255 e~~e~V~~Lfs--~iG~~v~vdE~~~Da~tAlsGsgPAf 291 (303)
+..+.+..+++ .+|..+.+.+++||..+|.. ..|.+
T Consensus 427 qa~~ai~~~~~g~~~~~~V~~~P~~~De~vA~l-hL~~l 464 (494)
T 3ce6_A 427 QTIAQIELWTKNDEYDNEVYRLPKHLDEKVARI-HVEAL 464 (494)
T ss_dssp HHHHHHHHHHTGGGCCSSEECCCHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHcCCCCCCEEEECHHHHHHHHHHh-hHHHH
Confidence 34455555555 56777888888899999887 67765
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0057 Score=57.01 Aligned_cols=87 Identities=8% Similarity=0.041 Sum_probs=54.6
Q ss_pred CCCcEEEEcCC-hhhHHHHHHHHhh-------------cHHH----HhhCCC-eEecChHHhhc--CCCEEEEeeCCccH
Q psy6714 131 NRSDKQIAGTT-ERGPGALIASLNI-------------VSKA----TGTMGA-KITFDNKEVTL--NSEVIILAVKPHIV 189 (303)
Q Consensus 131 ~~mkIgIIGlG-~MG~~~La~al~r-------------~~e~----l~e~Gv-~v~~d~~eav~--~ADIVILAVpP~~v 189 (303)
.++||||||+| .||. ..+..+.. ..++ .+++|+ .+..|.+++++ +.|+|++|+|+..-
T Consensus 17 ~~irvgiIG~G~~~g~-~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H 95 (340)
T 1zh8_A 17 RKIRLGIVGCGIAARE-LHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELN 95 (340)
T ss_dssp CCEEEEEECCSHHHHH-THHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGH
T ss_pred CceeEEEEecCHHHHH-HHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCchHH
Confidence 35799999999 7887 33333222 1122 234576 67888888886 58999999998877
Q ss_pred HHHHHhhccccCCCCEEEEec-CCCcHHHHHhh
Q psy6714 190 PVALNDIKPVFNESNLLISVA-GGVPIKNMEQA 221 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSia-aGV~ie~L~~~ 221 (303)
.+++.... ..|+-|+.-. -..+.+..+++
T Consensus 96 ~~~~~~al---~aGkhVl~EKPla~~~~ea~~l 125 (340)
T 1zh8_A 96 LPFIEKAL---RKGVHVICEKPISTDVETGKKV 125 (340)
T ss_dssp HHHHHHHH---HTTCEEEEESSSSSSHHHHHHH
T ss_pred HHHHHHHH---HCCCcEEEeCCCCCCHHHHHHH
Confidence 66665543 2455555321 12355555444
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.002 Score=64.02 Aligned_cols=86 Identities=10% Similarity=0.058 Sum_probs=57.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhc
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN----------IVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~ 197 (303)
..++|+|||+|.||. .++..++ +... .....|+.+ .+..+++++||+|++++....+.. .+..
T Consensus 256 ~GktVgIIG~G~IG~-~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~-~~l~ell~~aDiVi~~~~t~~lI~--~~~l 331 (479)
T 1v8b_A 256 SGKIVVICGYGDVGK-GCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNVDVIK--LEHL 331 (479)
T ss_dssp TTSEEEEECCSHHHH-HHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSSSSBC--HHHH
T ss_pred CCCEEEEEeeCHHHH-HHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEe-cCHHHHHhcCCEEEECCChhhhcC--HHHH
Confidence 467899999999999 4555432 2222 233567765 578899999999999975333211 1222
Q ss_pred cccCCCCEEEEecCC---CcHHHHHh
Q psy6714 198 PVFNESNLLISVAGG---VPIKNMEQ 220 (303)
Q Consensus 198 ~~L~~g~IVVSiaaG---V~ie~L~~ 220 (303)
..++++.+||.+.-| |+.+.|.+
T Consensus 332 ~~MK~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 332 LKMKNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp TTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred hhcCCCcEEEEeCCCCccccchhhhc
Confidence 346688899977655 46677766
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0073 Score=57.51 Aligned_cols=87 Identities=14% Similarity=0.080 Sum_probs=54.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHh--------------------hcHHH----HhhCCC-eEecChHHhhc--CCCEEEEee
Q psy6714 132 RSDKQIAGTTERGPGALIASLN--------------------IVSKA----TGTMGA-KITFDNKEVTL--NSEVIILAV 184 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~--------------------r~~e~----l~e~Gv-~v~~d~~eav~--~ADIVILAV 184 (303)
++||||||+|.||. ..+..+. .+.++ .+++|+ .+..|.+++++ +.|+|++|+
T Consensus 26 klrvgiIG~G~ig~-~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~t 104 (412)
T 4gqa_A 26 RLNIGLIGSGFMGQ-AHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITS 104 (412)
T ss_dssp EEEEEEECCSHHHH-HHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECS
T ss_pred cceEEEEcCcHHHH-HHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECC
Confidence 57999999999997 3332221 12222 245677 57788899886 579999999
Q ss_pred CCccHHHHHHhhccccCCCCEEEEec-CCCcHHHHHhhC
Q psy6714 185 KPHIVPVALNDIKPVFNESNLLISVA-GGVPIKNMEQAL 222 (303)
Q Consensus 185 pP~~v~~VL~eI~~~L~~g~IVVSia-aGV~ie~L~~~l 222 (303)
|+..=.+++.... ..|+-|+.-. -+.+.++.++++
T Consensus 105 p~~~H~~~~~~al---~aGkhVl~EKP~a~~~~ea~~l~ 140 (412)
T 4gqa_A 105 PNHLHYTMAMAAI---AAGKHVYCEKPLAVNEQQAQEMA 140 (412)
T ss_dssp CGGGHHHHHHHHH---HTTCEEEEESCSCSSHHHHHHHH
T ss_pred CcHHHHHHHHHHH---HcCCCeEeecCCcCCHHHHHHHH
Confidence 9777666665433 2455555221 134555555543
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0021 Score=60.34 Aligned_cols=81 Identities=19% Similarity=0.242 Sum_probs=49.5
Q ss_pred CCcEEEEcCChhhHHHHHHHH-h----------hcHHH-------H----hh--C--CCeEecChHHhhcCCCEEEEeeC
Q psy6714 132 RSDKQIAGTTERGPGALIASL-N----------IVSKA-------T----GT--M--GAKITFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-~----------r~~e~-------l----~e--~--Gv~v~~d~~eav~~ADIVILAVp 185 (303)
+|||+|||.|.||.+ ++..+ . ...++ + .. . .+..+.|. +++++||+||+++.
T Consensus 14 ~~kI~ViGaG~vG~~-iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg 91 (328)
T 2hjr_A 14 RKKISIIGAGQIGST-IALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAG 91 (328)
T ss_dssp CCEEEEECCSHHHHH-HHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred CCEEEEECCCHHHHH-HHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCC
Confidence 479999999999995 44331 0 11111 1 11 1 23444566 78899999999993
Q ss_pred -Cc---------------cHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 -PH---------------IVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 -P~---------------~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
|. .+.++++++..+. ++.+||-..+.++.
T Consensus 92 ~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~ 136 (328)
T 2hjr_A 92 VPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPLDA 136 (328)
T ss_dssp CCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHH
T ss_pred CCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCchHH
Confidence 21 2566777777665 66666545555543
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00081 Score=63.61 Aligned_cols=93 Identities=20% Similarity=0.201 Sum_probs=60.0
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHh----------hc-HHHHhhCCCeEecChHHhhcCCCEEEEeeCC-ccHHHHH-Hhh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLN----------IV-SKATGTMGAKITFDNKEVTLNSEVIILAVKP-HIVPVAL-NDI 196 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~----------r~-~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL-~eI 196 (303)
+..+++||||+|.||. .++..++ .. .+...+.|+.. .+..+++++||+|++++|- .....++ ++.
T Consensus 139 l~g~tvGIiG~G~IG~-~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~-~~l~ell~~sDivslh~Plt~~T~~li~~~~ 216 (334)
T 3kb6_A 139 LNRLTLGVIGTGRIGS-RVAMYGLAFGMKVLCYDVVKREDLKEKGCVY-TSLDELLKESDVISLHVPYTKETHHMINEER 216 (334)
T ss_dssp GGGSEEEEECCSHHHH-HHHHHHHHTTCEEEEECSSCCHHHHHTTCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHH
T ss_pred ecCcEEEEECcchHHH-HHHHhhcccCceeeecCCccchhhhhcCcee-cCHHHHHhhCCEEEEcCCCChhhccCcCHHH
Confidence 4467899999999999 4654422 11 12334556653 5788999999999999983 3333333 122
Q ss_pred ccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 197 KPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
...++++.++|.+.=| |+.+.|.+.|..
T Consensus 217 l~~mk~~a~lIN~aRG~iVde~aL~~aL~~ 246 (334)
T 3kb6_A 217 ISLMKDGVYLINTARGKVVDTDALYRAYQR 246 (334)
T ss_dssp HHHSCTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred HhhcCCCeEEEecCccccccHHHHHHHHHh
Confidence 2346688899987733 344667776653
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0025 Score=48.83 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=47.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh-----------hcHHH---HhhCCCeEe-------cChHHhhcCCCEEEEeeCCccH
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN-----------IVSKA---TGTMGAKIT-------FDNKEVTLNSEVIILAVKPHIV 189 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~-----------r~~e~---l~e~Gv~v~-------~d~~eav~~ADIVILAVpP~~v 189 (303)
++|+|.|+|.|.||.. ++..+. +..++ +...|+... .+..++++++|+||.|+++...
T Consensus 4 ~~~~v~I~G~G~iG~~-~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~~ 82 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQM-IAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFLT 82 (118)
T ss_dssp TCEEEEEECCSHHHHH-HHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGGH
T ss_pred CcCeEEEECCCHHHHH-HHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchhh
Confidence 4679999999999994 554421 12222 234455432 1223566789999999988777
Q ss_pred HHHHHhhccccCCCCEEEEecC
Q psy6714 190 PVALNDIKPVFNESNLLISVAG 211 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSiaa 211 (303)
..++..... .+..++.+.+
T Consensus 83 ~~~~~~~~~---~g~~~~~~~~ 101 (118)
T 3ic5_A 83 PIIAKAAKA---AGAHYFDLTE 101 (118)
T ss_dssp HHHHHHHHH---TTCEEECCCS
T ss_pred HHHHHHHHH---hCCCEEEecC
Confidence 777655433 3444554443
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0024 Score=53.72 Aligned_cols=79 Identities=18% Similarity=0.210 Sum_probs=45.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhc-----------HH---HHhhCCCeEe-cC---h---HHh--hcCCCEEEEeeCCcc
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIV-----------SK---ATGTMGAKIT-FD---N---KEV--TLNSEVIILAVKPHI 188 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~-----------~e---~l~e~Gv~v~-~d---~---~ea--v~~ADIVILAVpP~~ 188 (303)
.++|.|+|+|.||. .++..+... .+ .+.+.|+.+. .| . .++ ++++|+||+|++...
T Consensus 39 ~~~v~IiG~G~~G~-~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~~ 117 (183)
T 3c85_A 39 HAQVLILGMGRIGT-GAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHHQ 117 (183)
T ss_dssp TCSEEEECCSHHHH-HHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSHH
T ss_pred CCcEEEECCCHHHH-HHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCChH
Confidence 56899999999999 465543221 12 3445677532 22 1 233 568999999998654
Q ss_pred HH-HHHHhhccccCCCCEEEEecCC
Q psy6714 189 VP-VALNDIKPVFNESNLLISVAGG 212 (303)
Q Consensus 189 v~-~VL~eI~~~L~~g~IVVSiaaG 212 (303)
.. .++..++. +.++..||..+.+
T Consensus 118 ~~~~~~~~~~~-~~~~~~ii~~~~~ 141 (183)
T 3c85_A 118 GNQTALEQLQR-RNYKGQIAAIAEY 141 (183)
T ss_dssp HHHHHHHHHHH-TTCCSEEEEEESS
T ss_pred HHHHHHHHHHH-HCCCCEEEEEECC
Confidence 43 33333333 3344445544433
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0021 Score=59.98 Aligned_cols=81 Identities=15% Similarity=0.210 Sum_probs=49.9
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcHH------HHh---hCCCeEecChHHhhcCCCEEEEeeCC----
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVSK------ATG---TMGAKITFDNKEVTLNSEVIILAVKP---- 186 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~e------~l~---e~Gv~v~~d~~eav~~ADIVILAVpP---- 186 (303)
++||+|||.|.||.+ ++..+ +...+ .+. ...+..+.|. +.+++||+||+++-.
T Consensus 14 ~~kV~ViGaG~vG~~-~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG 91 (303)
T 2i6t_A 14 VNKITVVGGGELGIA-CTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSS 91 (303)
T ss_dssp CCEEEEECCSHHHHH-HHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----
T ss_pred CCEEEEECCCHHHHH-HHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCC
Confidence 689999999999974 33221 11111 111 1134555666 778999999999721
Q ss_pred -----------ccHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 187 -----------HIVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 187 -----------~~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
..+.++++++..+. ++.+||-..+.++.
T Consensus 92 ~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~~ 130 (303)
T 2i6t_A 92 QSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVEI 130 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHHH
Confidence 12556667777655 66676657776654
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0045 Score=59.95 Aligned_cols=85 Identities=11% Similarity=0.048 Sum_probs=52.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHh------------hcHHHH-------hhCC---CeEec----ChHHhhc--CCCEEEEe
Q psy6714 132 RSDKQIAGTTERGPGALIASLN------------IVSKAT-------GTMG---AKITF----DNKEVTL--NSEVIILA 183 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~------------r~~e~l-------~e~G---v~v~~----d~~eav~--~ADIVILA 183 (303)
++||||||+|.||.. .+..+. +..+++ .++| ..+.. |.+++++ +.|+|++|
T Consensus 20 ~~rvgiIG~G~~g~~-h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~ 98 (444)
T 2ixa_A 20 KVRIAFIAVGLRGQT-HVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVS 98 (444)
T ss_dssp CEEEEEECCSHHHHH-HHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEEC
T ss_pred CceEEEEecCHHHHH-HHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEc
Confidence 579999999999984 333322 112221 1346 46666 8888886 58999999
Q ss_pred eCCccHHHHHHhhccccCCCCEEEEec-CCCcHHHHHh
Q psy6714 184 VKPHIVPVALNDIKPVFNESNLLISVA-GGVPIKNMEQ 220 (303)
Q Consensus 184 VpP~~v~~VL~eI~~~L~~g~IVVSia-aGV~ie~L~~ 220 (303)
+|+..-.+++.... ..|+-|+.-. -..+.+..++
T Consensus 99 tp~~~h~~~~~~al---~aGkhV~~EKP~a~~~~ea~~ 133 (444)
T 2ixa_A 99 SPWEWHHEHGVAAM---KAGKIVGMEVSGAITLEECWD 133 (444)
T ss_dssp CCGGGHHHHHHHHH---HTTCEEEECCCCCSSHHHHHH
T ss_pred CCcHHHHHHHHHHH---HCCCeEEEeCCCcCCHHHHHH
Confidence 99877666665433 3566555321 1344544433
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0063 Score=57.96 Aligned_cols=85 Identities=8% Similarity=-0.018 Sum_probs=53.9
Q ss_pred CCcEEEEcCCh---hhHHHHHHHH-------------hhcHHH----HhhCCC---eEecChHHhhcC-------CCEEE
Q psy6714 132 RSDKQIAGTTE---RGPGALIASL-------------NIVSKA----TGTMGA---KITFDNKEVTLN-------SEVII 181 (303)
Q Consensus 132 ~mkIgIIGlG~---MG~~~La~al-------------~r~~e~----l~e~Gv---~v~~d~~eav~~-------ADIVI 181 (303)
++||||||+|. ||.. .+..+ ++..++ .+++|+ .+..|.++++++ .|+|+
T Consensus 12 ~~rvgiiG~G~~~~ig~~-h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~ 90 (398)
T 3dty_A 12 PIRWAMVGGGSQSQIGYI-HRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVS 90 (398)
T ss_dssp CEEEEEEECCTTCSSHHH-HHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEE
T ss_pred cceEEEEcCCccchhHHH-HHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEE
Confidence 57999999999 9973 33221 112222 235788 577888888864 89999
Q ss_pred EeeCCccHHHHHHhhccccCCCCEEEEecC--CCcHHHHHhh
Q psy6714 182 LAVKPHIVPVALNDIKPVFNESNLLISVAG--GVPIKNMEQA 221 (303)
Q Consensus 182 LAVpP~~v~~VL~eI~~~L~~g~IVVSiaa--GV~ie~L~~~ 221 (303)
+|+|+..-.+++..... .|+-|+. -. ..+.+..+++
T Consensus 91 i~tp~~~H~~~~~~al~---aGkhVl~-EKPla~~~~ea~~l 128 (398)
T 3dty_A 91 IATPNGTHYSITKAALE---AGLHVVC-EKPLCFTVEQAENL 128 (398)
T ss_dssp EESCGGGHHHHHHHHHH---TTCEEEE-CSCSCSCHHHHHHH
T ss_pred ECCCcHHHHHHHHHHHH---CCCeEEE-eCCCcCCHHHHHHH
Confidence 99998776666655432 4555553 22 3445554443
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0026 Score=59.78 Aligned_cols=82 Identities=13% Similarity=0.206 Sum_probs=51.9
Q ss_pred CCcEEEEcCChhhHHHHHHHH--h---------hcHHH-----------HhhC----CCeEecChHHhhcCCCEEEEee-
Q psy6714 132 RSDKQIAGTTERGPGALIASL--N---------IVSKA-----------TGTM----GAKITFDNKEVTLNSEVIILAV- 184 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al--~---------r~~e~-----------l~e~----Gv~v~~d~~eav~~ADIVILAV- 184 (303)
+|||+|||.|.||.+ ++..+ + ...++ +... .+..+.|..+++++||+||+++
T Consensus 9 ~~kI~VIGaG~vG~~-lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g 87 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGT-MGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG 87 (331)
T ss_dssp CCEEEEECCSHHHHH-HHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred CCEEEEECCCHHHHH-HHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccC
Confidence 589999999999995 54331 0 01110 1111 2334577777899999999999
Q ss_pred -C--Ccc-----------------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 185 -K--PHI-----------------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 185 -p--P~~-----------------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
| +.. +.+++++|..+. ++.+||-..+.+++
T Consensus 88 ~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~~ 137 (331)
T 1pzg_A 88 LTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDC 137 (331)
T ss_dssp CSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHH
T ss_pred CCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchHH
Confidence 3 222 667777777765 66666655555544
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0019 Score=60.91 Aligned_cols=100 Identities=13% Similarity=0.205 Sum_probs=57.8
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcHHH-------Hhh------CCCeEecChHHhhcCCCEEEEeeC-
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVSKA-------TGT------MGAKITFDNKEVTLNSEVIILAVK- 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~e~-------l~e------~Gv~v~~d~~eav~~ADIVILAVp- 185 (303)
.|||+|||+|.||.+ ++..+ +...++ +.. .++.+..+..+++++||+||+++.
T Consensus 5 ~~kI~ViGaG~vG~~-~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~ 83 (326)
T 3pqe_A 5 VNKVALIGAGFVGSS-YAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGA 83 (326)
T ss_dssp CCEEEEECCSHHHHH-HHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHH-HHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEeccc
Confidence 689999999999994 55432 111111 111 244555555678899999999983
Q ss_pred ---Ccc------------HHHHHHhhccccCCCCEEEEecCCCcHHH--HHhh--CCCCCceEEEecC
Q psy6714 186 ---PHI------------VPVALNDIKPVFNESNLLISVAGGVPIKN--MEQA--LPKNSRIIRAMPN 234 (303)
Q Consensus 186 ---P~~------------v~~VL~eI~~~L~~g~IVVSiaaGV~ie~--L~~~--l~~~~~VVr~mPn 234 (303)
|.. +.++++.+..+ .++.+|+-..+++++-. +.+. +|. .+++.++..
T Consensus 84 p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~-~p~a~vlvvtNPvd~~t~~~~k~~g~p~-~rviG~gt~ 149 (326)
T 3pqe_A 84 NQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFLVATNPVDILTYATWKFSGLPK-ERVIGSGTT 149 (326)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHHHHHHHHHHHHCCCG-GGEEECTTH
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEEcCChHHHHHHHHHHhcCCCH-HHEEeeccc
Confidence 211 23444455554 35667777777776532 2232 332 356665333
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0075 Score=48.40 Aligned_cols=89 Identities=10% Similarity=0.139 Sum_probs=48.7
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCCCeEe-cCh--HHh-----hcCCCEEEEeeCCccH
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN----------IVSK---ATGTMGAKIT-FDN--KEV-----TLNSEVIILAVKPHIV 189 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~Gv~v~-~d~--~ea-----v~~ADIVILAVpP~~v 189 (303)
.|++|.|+|+|.+|. .++..+. +..+ .+.+.|+.+. .|. .+. ++++|+||++++....
T Consensus 5 ~~~~v~I~G~G~iG~-~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~ 83 (141)
T 3llv_A 5 GRYEYIVIGSEAAGV-GLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEF 83 (141)
T ss_dssp -CCSEEEECCSHHHH-HHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHH
T ss_pred CCCEEEEECCCHHHH-HHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHH
Confidence 467899999999999 5665542 1222 3445566532 221 222 3579999999986555
Q ss_pred HHHHHhhccccCCCCEEEEecCCCcHHHHHh
Q psy6714 190 PVALNDIKPVFNESNLLISVAGGVPIKNMEQ 220 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~ 220 (303)
.-.+......+....+|+........+.|++
T Consensus 84 n~~~~~~a~~~~~~~iia~~~~~~~~~~l~~ 114 (141)
T 3llv_A 84 NLKILKALRSVSDVYAIVRVSSPKKKEEFEE 114 (141)
T ss_dssp HHHHHHHHHHHCCCCEEEEESCGGGHHHHHH
T ss_pred HHHHHHHHHHhCCceEEEEEcChhHHHHHHH
Confidence 4433333323334445444433333344443
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0012 Score=61.61 Aligned_cols=88 Identities=18% Similarity=0.170 Sum_probs=59.2
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhcH------------H--------HH---hhCCCeEecChHHhhcCCCEEEEeeCCc
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIVS------------K--------AT---GTMGAKITFDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~~------------e--------~l---~e~Gv~v~~d~~eav~~ADIVILAVpP~ 187 (303)
++||+|+| +|.||. .++....... . .+ ...|+.++.|..+++.++|+||-++.|.
T Consensus 21 ~irV~V~Ga~GrMGr-~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~p~ 99 (288)
T 3ijp_A 21 SMRLTVVGANGRMGR-ELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQPQ 99 (288)
T ss_dssp CEEEEESSTTSHHHH-HHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSCHH
T ss_pred CeEEEEECCCCHHHH-HHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCCHH
Confidence 57999999 999999 6665532211 0 01 1346777788889899999999999988
Q ss_pred cHHHHHHhhccccCCCCEEEEecCCCcHHH---HHhhCC
Q psy6714 188 IVPVALNDIKPVFNESNLLISVAGGVPIKN---MEQALP 223 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~---L~~~l~ 223 (303)
.+.+.+..... .+.-+|....|.+.+. |++.+.
T Consensus 100 a~~~~~~~~l~---~Gv~vViGTTG~~~e~~~~L~~aa~ 135 (288)
T 3ijp_A 100 ASVLYANYAAQ---KSLIHIIGTTGFSKTEEAQIADFAK 135 (288)
T ss_dssp HHHHHHHHHHH---HTCEEEECCCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH---cCCCEEEECCCCCHHHHHHHHHHhC
Confidence 87777665433 3444555556777643 444443
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0026 Score=59.38 Aligned_cols=101 Identities=12% Similarity=0.192 Sum_probs=59.0
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcHHHH-------h----h--CCCeEecChHHhhcCCCEEEEeeC-
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVSKAT-------G----T--MGAKITFDNKEVTLNSEVIILAVK- 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~e~l-------~----e--~Gv~v~~d~~eav~~ADIVILAVp- 185 (303)
+|||+|||+|.+|.+ ++..+ +...+++ . . ..+.+..+..+++++||+||+++.
T Consensus 6 ~~KI~IIGaG~vG~~-la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~ 84 (317)
T 3d0o_A 6 GNKVVLIGNGAVGSS-YAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGA 84 (317)
T ss_dssp CCEEEEECCSHHHHH-HHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHH-HHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCC
Confidence 479999999999995 44321 1111111 1 1 234455566778999999999984
Q ss_pred C---------------ccHHHHHHhhccccCCCCEEEEecCCCcHH--HHHhh--CCCCCceEEEecCc
Q psy6714 186 P---------------HIVPVALNDIKPVFNESNLLISVAGGVPIK--NMEQA--LPKNSRIIRAMPNT 235 (303)
Q Consensus 186 P---------------~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie--~L~~~--l~~~~~VVr~mPn~ 235 (303)
| ..+.++.+.+..+ .++.+||-..+++..- .+.+. ++. .+++.++.++
T Consensus 85 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~t~~~~k~~~~p~-~rviG~gt~l 151 (317)
T 3d0o_A 85 AQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATNPVDILAYATWKFSGLPK-ERVIGSGTIL 151 (317)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHHHHHHHHHHHHCCCG-GGEEECTTHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCcHHHHHHHHHHHhCCCH-HHEEecCccc
Confidence 2 1244555566665 4566666566666552 33344 442 3666664443
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0026 Score=59.85 Aligned_cols=62 Identities=10% Similarity=0.080 Sum_probs=40.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhc------------H----HHHhhCCC------------------eEecChHHhhcCC
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIV------------S----KATGTMGA------------------KITFDNKEVTLNS 177 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~------------~----e~l~e~Gv------------------~v~~d~~eav~~A 177 (303)
|+||||||+|.||. .++..+... . ..++..|+ .+..+..+++.++
T Consensus 2 ~irVgIiG~G~iG~-~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~v 80 (334)
T 2czc_A 2 KVKVGVNGYGTIGK-RVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKV 80 (334)
T ss_dssp CEEEEEECCSHHHH-HHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTC
T ss_pred CcEEEEEeEhHHHH-HHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCC
Confidence 46999999999999 566553221 1 11223443 2335677777899
Q ss_pred CEEEEeeCCccHHHHHH
Q psy6714 178 EVIILAVKPHIVPVALN 194 (303)
Q Consensus 178 DIVILAVpP~~v~~VL~ 194 (303)
|+||+|+|...-.+...
T Consensus 81 DvV~~aTp~~~h~~~a~ 97 (334)
T 2czc_A 81 DIIVDATPGGIGAKNKP 97 (334)
T ss_dssp SEEEECCSTTHHHHHHH
T ss_pred CEEEECCCccccHHHHH
Confidence 99999999776444444
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.002 Score=59.92 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=48.5
Q ss_pred CcEEEEcCChhhHHHHHHHH------------hhcHHHH-------h---h-C--CCe--EecChHHhhcCCCEEEEeeC
Q psy6714 133 SDKQIAGTTERGPGALIASL------------NIVSKAT-------G---T-M--GAK--ITFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al------------~r~~e~l-------~---e-~--Gv~--v~~d~~eav~~ADIVILAVp 185 (303)
|||+|||.|.||.+ ++..+ +...+++ . . + ... .+.| .+++++||+||++..
T Consensus 1 MkI~ViGaG~vG~~-la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag 78 (294)
T 1oju_A 1 MKLGFVGAGRVGST-SAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAG 78 (294)
T ss_dssp CEEEEECCSHHHHH-HHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCC
T ss_pred CEEEEECCCHHHHH-HHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCC
Confidence 79999999999994 54331 1111111 1 1 1 223 3345 778999999999983
Q ss_pred ----Cc------------cHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 ----PH------------IVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 ----P~------------~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
|. .+.++.+.+..+ .++.+||-..+++++
T Consensus 79 ~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvsNPvd~ 123 (294)
T 1oju_A 79 LARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPMDV 123 (294)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeCCcchH
Confidence 21 123444556654 466777767777765
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0046 Score=57.12 Aligned_cols=83 Identities=11% Similarity=0.144 Sum_probs=58.1
Q ss_pred CCcEEEEcC-ChhhHHHHHHHHhhc---------HHHH--hhCCCeEecChHHhhc--CCCEEEEeeCCccHHHHHHhhc
Q psy6714 132 RSDKQIAGT-TERGPGALIASLNIV---------SKAT--GTMGAKITFDNKEVTL--NSEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 132 ~mkIgIIGl-G~MG~~~La~al~r~---------~e~l--~e~Gv~v~~d~~eav~--~ADIVILAVpP~~v~~VL~eI~ 197 (303)
.+||+|+|+ |.||. ..+..+... ..+. ..+|+.+..+..++.+ +.|+++++||+....+++.+..
T Consensus 7 ~~rVaViG~sG~~G~-~~~~~l~~~g~~~V~~V~p~~~g~~~~G~~vy~sl~el~~~~~~D~viI~tP~~~~~~~~~ea~ 85 (288)
T 2nu8_A 7 NTKVICQGFTGSQGT-FHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAI 85 (288)
T ss_dssp TCEEEEETTTSHHHH-HHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEECCCChHHH-HHHHHHHHCCCeEEEEeCCCcccceeCCeeccCCHHHHhhcCCCCEEEEecCHHHHHHHHHHHH
Confidence 578999998 99998 455443221 0111 1347777788888887 8999999999999999998865
Q ss_pred cccCCCCEEEEecCCCcHHH
Q psy6714 198 PVFNESNLLISVAGGVPIKN 217 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV~ie~ 217 (303)
.. .-+.+|-+..|++.+.
T Consensus 86 ~~--Gi~~iVi~t~G~~~~~ 103 (288)
T 2nu8_A 86 DA--GIKLIITITEGIPTLD 103 (288)
T ss_dssp HT--TCSEEEECCCCCCHHH
T ss_pred HC--CCCEEEEECCCCCHHH
Confidence 42 1234444667887753
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0017 Score=60.76 Aligned_cols=76 Identities=13% Similarity=0.235 Sum_probs=48.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHh------------hc-HHHH----h-hCCC--eEecChHHhhcCCCEEEEeeCCccHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLN------------IV-SKAT----G-TMGA--KITFDNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~------------r~-~e~l----~-e~Gv--~v~~d~~eav~~ADIVILAVpP~~v~~ 191 (303)
..+|+|||+|.||.. .+..+. ++ .+.+ . +.|+ ... +.++++++|||||+|++... .
T Consensus 121 ~~~v~iIGaG~~a~~-~~~al~~~~~~~~V~v~~r~~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~~--p 196 (313)
T 3hdj_A 121 SSVLGLFGAGTQGAE-HAAQLSARFALEAILVHDPYASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRSTT--P 196 (313)
T ss_dssp CCEEEEECCSHHHHH-HHHHHHHHSCCCEEEEECTTCCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCSS--C
T ss_pred CcEEEEECccHHHHH-HHHHHHHhCCCcEEEEECCcHHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCCC--c
Confidence 467999999999984 333321 11 1122 2 2466 345 88899999999999998642 3
Q ss_pred HHHhhccccCCCCEEEEecCCCc
Q psy6714 192 ALNDIKPVFNESNLLISVAGGVP 214 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSiaaGV~ 214 (303)
++. .+.++++++|+ .++..+
T Consensus 197 vl~--~~~l~~G~~V~-~vGs~~ 216 (313)
T 3hdj_A 197 LFA--GQALRAGAFVG-AIGSSL 216 (313)
T ss_dssp SSC--GGGCCTTCEEE-ECCCSS
T ss_pred ccC--HHHcCCCcEEE-ECCCCC
Confidence 332 34577888765 444443
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0028 Score=59.32 Aligned_cols=101 Identities=15% Similarity=0.242 Sum_probs=59.5
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcHHHH-------hh-----CCCeEecChHHhhcCCCEEEEeeC--
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVSKAT-------GT-----MGAKITFDNKEVTLNSEVIILAVK-- 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~e~l-------~e-----~Gv~v~~d~~eav~~ADIVILAVp-- 185 (303)
+|||+|||+|.+|.+ ++..+ +...+++ .. ..+++..+..+++++||+||++..
T Consensus 5 ~~KI~IiGaG~vG~~-~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~ 83 (318)
T 1ez4_A 5 HQKVVLVGDGAVGSS-YAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAP 83 (318)
T ss_dssp BCEEEEECCSHHHHH-HHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC-
T ss_pred CCEEEEECCCHHHHH-HHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCC
Confidence 489999999999994 44331 1111111 11 234455566778999999999984
Q ss_pred --C------------ccHHHHHHhhccccCCCCEEEEecCCCcHH--HHHhh--CCCCCceEEEecCc
Q psy6714 186 --P------------HIVPVALNDIKPVFNESNLLISVAGGVPIK--NMEQA--LPKNSRIIRAMPNT 235 (303)
Q Consensus 186 --P------------~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie--~L~~~--l~~~~~VVr~mPn~ 235 (303)
| ..+.++++.+..+ .++.+||-..+++..- .+.+. ++. .+++.++.++
T Consensus 84 ~~~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~~~t~~~~k~s~~p~-~rviG~gt~L 149 (318)
T 1ez4_A 84 QKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPVDILTYATWKFSGFPK-ERVIGSGTSL 149 (318)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHHHHHHHHHHHHCCCG-GGEEECTTHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCcHHHHHHHHHHHcCCCH-HHEEeccccc
Confidence 2 2244555556655 3566666677777652 33343 442 3666664443
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0067 Score=58.78 Aligned_cols=64 Identities=5% Similarity=-0.069 Sum_probs=42.6
Q ss_pred CCcEEEEcC----ChhhHHHHHHHHhhc-------------HHH----HhhCCCe---EecChHHhhc--CCCEEEEeeC
Q psy6714 132 RSDKQIAGT----TERGPGALIASLNIV-------------SKA----TGTMGAK---ITFDNKEVTL--NSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIGl----G~MG~~~La~al~r~-------------~e~----l~e~Gv~---v~~d~~eav~--~ADIVILAVp 185 (303)
++||||||+ |.||.. .+..+... .++ .+++|+. +..|..++++ +.|+|++|+|
T Consensus 20 ~irvgiIG~g~~gG~~g~~-~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp 98 (438)
T 3btv_A 20 PIRVGFVGLNAAKGWAIKT-HYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQ 98 (438)
T ss_dssp CEEEEEESCCTTSSSTTTT-HHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSC
T ss_pred CCEEEEEcccCCCChHHHH-HHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCC
Confidence 478999999 888872 33322211 122 2345664 7788889886 6899999999
Q ss_pred CccHHHHHHhh
Q psy6714 186 PHIVPVALNDI 196 (303)
Q Consensus 186 P~~v~~VL~eI 196 (303)
+..-.+++...
T Consensus 99 ~~~H~~~~~~a 109 (438)
T 3btv_A 99 VASHYEVVMPL 109 (438)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 77665555443
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0033 Score=58.75 Aligned_cols=102 Identities=14% Similarity=0.210 Sum_probs=57.0
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcHHH-------Hhh---C--CCeEecChHHhhcCCCEEEEeeC-C
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVSKA-------TGT---M--GAKITFDNKEVTLNSEVIILAVK-P 186 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~e~-------l~e---~--Gv~v~~d~~eav~~ADIVILAVp-P 186 (303)
+|||+|||+|.+|.+ ++..+ +...++ +.. + .+++..+..+++++||+||++++ |
T Consensus 7 ~~KI~IiGaG~vG~~-~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p 85 (318)
T 1y6j_A 7 RSKVAIIGAGFVGAS-AAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGAN 85 (318)
T ss_dssp CCCEEEECCSHHHHH-HHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC-
T ss_pred CCEEEEECCCHHHHH-HHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence 589999999999995 44331 111111 111 1 22333344667999999999995 3
Q ss_pred cc---------------HHHHHHhhccccCCCCEEEEecCCCcHH--HHHhh--CCCCCceEEEecCcH
Q psy6714 187 HI---------------VPVALNDIKPVFNESNLLISVAGGVPIK--NMEQA--LPKNSRIIRAMPNTP 236 (303)
Q Consensus 187 ~~---------------v~~VL~eI~~~L~~g~IVVSiaaGV~ie--~L~~~--l~~~~~VVr~mPn~p 236 (303)
.. +.++++.+.++- ++.+||-..+++..- .+.+. ++. .+++.++.+++
T Consensus 86 ~k~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPv~~~~~~~~k~s~~p~-~rviG~gt~Ld 152 (318)
T 1y6j_A 86 RKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVVSNPVDIITYMIQKWSGLPV-GKVIGSGTVLD 152 (318)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEECSSSHHHHHHHHHHHHTCCT-TTEEECTTHHH
T ss_pred CCCCcCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCcHHHHHHHHHHHcCCCH-HHEeccCCchH
Confidence 21 466667777653 566666566666542 23333 443 46766644433
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0046 Score=57.93 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=49.5
Q ss_pred CCcEEEEcCChhhHHHHHHHH-----------hhcHHH-------Hh------hCC--CeEecChHHhhcCCCEEEEee-
Q psy6714 132 RSDKQIAGTTERGPGALIASL-----------NIVSKA-------TG------TMG--AKITFDNKEVTLNSEVIILAV- 184 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-----------~r~~e~-------l~------e~G--v~v~~d~~eav~~ADIVILAV- 184 (303)
+|||+|||+|.||.+ ++..+ +...++ +. ... +..+.|. +++++||+||+++
T Consensus 4 ~~kI~VIGaG~vG~~-ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g 81 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGV-MATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAG 81 (322)
T ss_dssp CCEEEEECCSHHHHH-HHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCS
T ss_pred CCEEEEECCCHHHHH-HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCC
Confidence 579999999999995 44331 111111 11 112 2334566 7899999999998
Q ss_pred -CC--c-----------------cHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 185 -KP--H-----------------IVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 185 -pP--~-----------------~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
|. . .+.+++++|..+. ++.+||-..+.+++
T Consensus 82 ~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~~~ 131 (322)
T 1t2d_A 82 FTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDV 131 (322)
T ss_dssp CSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHH
T ss_pred CCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCChHH
Confidence 31 1 3566667777665 66666545565544
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0047 Score=57.35 Aligned_cols=82 Identities=22% Similarity=0.229 Sum_probs=47.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHH-h----------hcHHH-------Hhh------CCC--eEecChHHhhcCCCEEEEee
Q psy6714 131 NRSDKQIAGTTERGPGALIASL-N----------IVSKA-------TGT------MGA--KITFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al-~----------r~~e~-------l~e------~Gv--~v~~d~~eav~~ADIVILAV 184 (303)
|+|||+|||+|.||.+ ++..+ . ...++ +.+ ... ..+.+. +++++||+||+++
T Consensus 1 M~~kI~VIGaG~vG~~-~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~ 78 (309)
T 1ur5_A 1 MRKKISIIGAGFVGST-TAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTS 78 (309)
T ss_dssp -CCEEEEECCSHHHHH-HHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECC
T ss_pred CCCEEEEECCCHHHHH-HHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcC
Confidence 3579999999999995 44331 1 11111 111 122 233565 7789999999998
Q ss_pred C-C---------------ccHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 185 K-P---------------HIVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 185 p-P---------------~~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
. | ..+.++++.+..+. ++.+||-..++++.
T Consensus 79 g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNPv~~ 124 (309)
T 1ur5_A 79 GAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPLDA 124 (309)
T ss_dssp CC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCSSHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCCchHH
Confidence 3 2 12235556666654 66666555665554
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0023 Score=59.72 Aligned_cols=86 Identities=9% Similarity=0.038 Sum_probs=53.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcHH---------HHhhCCCeEecChHHhhcC---CCEEEEeeCCccHHHHHHhhccc
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVSK---------ATGTMGAKITFDNKEVTLN---SEVIILAVKPHIVPVALNDIKPV 199 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~e---------~l~e~Gv~v~~d~~eav~~---ADIVILAVpP~~v~~VL~eI~~~ 199 (303)
++||||||+|.||....+..+..... .....|+....|.++++++ .|+|++|+|+..-.+++....
T Consensus 25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~~~~~~al-- 102 (330)
T 4ew6_A 25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTVEGVNSYTTIEAMLDAEPSIDAVSLCMPPQYRYEAAYKAL-- 102 (330)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCCTTSEEESSHHHHHHHCTTCCEEEECSCHHHHHHHHHHHH--
T ss_pred CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhhcCCCccCCHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHH--
Confidence 46899999999997223333332211 1124578888888888764 899999999877766665543
Q ss_pred cCCCCEEEEec-CCCcHHHHHh
Q psy6714 200 FNESNLLISVA-GGVPIKNMEQ 220 (303)
Q Consensus 200 L~~g~IVVSia-aGV~ie~L~~ 220 (303)
..|+-|+.-. -+.+.+..++
T Consensus 103 -~aGkhVl~EKP~a~~~~e~~~ 123 (330)
T 4ew6_A 103 -VAGKHVFLEKPPGATLSEVAD 123 (330)
T ss_dssp -HTTCEEEECSSSCSSHHHHHH
T ss_pred -HcCCcEEEeCCCCCCHHHHHH
Confidence 2556555221 1345544443
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0051 Score=48.62 Aligned_cols=81 Identities=11% Similarity=0.130 Sum_probs=43.1
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh----------cHHH---HhhCCCeEe-cC---hH---Hh-hcCCCEEEEeeCCc-c
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI----------VSKA---TGTMGAKIT-FD---NK---EV-TLNSEVIILAVKPH-I 188 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r----------~~e~---l~e~Gv~v~-~d---~~---ea-v~~ADIVILAVpP~-~ 188 (303)
.+++|.|+|.|.||. .++..+.. ..++ +.+.|.... .+ .. ++ ++++|+||+|++.. .
T Consensus 5 ~~~~v~I~G~G~iG~-~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~ 83 (144)
T 2hmt_A 5 KNKQFAVIGLGRFGG-SIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ 83 (144)
T ss_dssp -CCSEEEECCSHHHH-HHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHH
T ss_pred cCCcEEEECCCHHHH-HHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchH
Confidence 356799999999999 56655321 2222 233455432 22 21 22 56799999999864 4
Q ss_pred HHHHHHhhccccCCCCEEEEecCCC
Q psy6714 189 VPVALNDIKPVFNESNLLISVAGGV 213 (303)
Q Consensus 189 v~~VL~eI~~~L~~g~IVVSiaaGV 213 (303)
....+......+....+ |..+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~i-i~~~~~~ 107 (144)
T 2hmt_A 84 ASTLTTLLLKELDIPNI-WVKAQNY 107 (144)
T ss_dssp HHHHHHHHHHHTTCSEE-EEECCSH
T ss_pred HHHHHHHHHHHcCCCeE-EEEeCCH
Confidence 33233222223444444 4444433
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0036 Score=58.33 Aligned_cols=99 Identities=12% Similarity=0.091 Sum_probs=57.5
Q ss_pred CcEEEEcCChhhHHHHHHHH------------hhcHHHH-------hh-----CCCeEecChHHhhcCCCEEEEeeC-Cc
Q psy6714 133 SDKQIAGTTERGPGALIASL------------NIVSKAT-------GT-----MGAKITFDNKEVTLNSEVIILAVK-PH 187 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al------------~r~~e~l-------~e-----~Gv~v~~d~~eav~~ADIVILAVp-P~ 187 (303)
|||+|||.|.+|.+ ++..+ +...+++ .. ..+.+..+..+++++||+||++.. |.
T Consensus 1 ~KI~IiGaG~vG~~-~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~ 79 (310)
T 2xxj_A 1 MKVGIVGSGMVGSA-TAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQ 79 (310)
T ss_dssp CEEEEECCSHHHHH-HHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCC
T ss_pred CEEEEECCCHHHHH-HHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCC
Confidence 79999999999994 44331 1111111 11 133444455778999999999984 32
Q ss_pred c---------------HHHHHHhhccccCCCCEEEEecCCCcHH--HHHhh--CCCCCceEEEecC
Q psy6714 188 I---------------VPVALNDIKPVFNESNLLISVAGGVPIK--NMEQA--LPKNSRIIRAMPN 234 (303)
Q Consensus 188 ~---------------v~~VL~eI~~~L~~g~IVVSiaaGV~ie--~L~~~--l~~~~~VVr~mPn 234 (303)
. +.++++.+..+ .++.+||-..+++..- .+.+. ++. .+++.++.+
T Consensus 80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv~~~t~~~~k~s~~p~-~rviG~gt~ 143 (310)
T 2xxj_A 80 RPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPVDVMTQVAYALSGLPP-GRVVGSGTI 143 (310)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHHHHHHHHHHTCCG-GGEEECTTH
T ss_pred CCCcCHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEecCchHHHHHHHHHHcCCCH-HHEEecCcc
Confidence 2 34455556655 3556666577777653 23333 442 366666444
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0034 Score=62.59 Aligned_cols=85 Identities=9% Similarity=0.138 Sum_probs=55.9
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh----------hcHHH---HhhCCCeEecChHHhhcCCCEEEEeeCCcc-H-HHHHHh
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN----------IVSKA---TGTMGAKITFDNKEVTLNSEVIILAVKPHI-V-PVALND 195 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~----------r~~e~---l~e~Gv~v~~d~~eav~~ADIVILAVpP~~-v-~~VL~e 195 (303)
..++|+|||+|.||. .++..++ +.... ....|+.+ .+..+++++||+|++++.... + .+.+.
T Consensus 276 ~GktVgIIG~G~IG~-~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~-~~l~ell~~aDiVi~~~~t~~lI~~~~l~- 352 (494)
T 3d64_A 276 AGKIAVVAGYGDVGK-GCAQSLRGLGATVWVTEIDPICALQAAMEGYRV-VTMEYAADKADIFVTATGNYHVINHDHMK- 352 (494)
T ss_dssp TTCEEEEECCSHHHH-HHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECSSSSCSBCHHHHH-
T ss_pred CCCEEEEEccCHHHH-HHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEe-CCHHHHHhcCCEEEECCCcccccCHHHHh-
Confidence 467899999999999 4665432 22222 23457765 578899999999999985332 2 23333
Q ss_pred hccccCCCCEEEEecCC---CcHHHHHhhC
Q psy6714 196 IKPVFNESNLLISVAGG---VPIKNMEQAL 222 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaG---V~ie~L~~~l 222 (303)
.++++.+||.+.-| |+.+.| +.+
T Consensus 353 ---~MK~gAilINvgrg~veID~~aL-~AL 378 (494)
T 3d64_A 353 ---AMRHNAIVCNIGHFDSEIDVAST-RQY 378 (494)
T ss_dssp ---HCCTTEEEEECSSSSCSBCCGGG-TTS
T ss_pred ---hCCCCcEEEEcCCCcchhchHHH-Hhh
Confidence 45678888877654 355566 444
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0089 Score=56.29 Aligned_cols=85 Identities=8% Similarity=0.003 Sum_probs=52.2
Q ss_pred CcEEEEcCChhhHHHHHHHH-----------hhcHHH----HhhCC-CeEecChHHhhcC--CCEEEEeeCCccHHHHHH
Q psy6714 133 SDKQIAGTTERGPGALIASL-----------NIVSKA----TGTMG-AKITFDNKEVTLN--SEVIILAVKPHIVPVALN 194 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al-----------~r~~e~----l~e~G-v~v~~d~~eav~~--ADIVILAVpP~~v~~VL~ 194 (303)
+||||||+|.+|...+...+ ++..++ .+++| ..+..|.++++++ .|+|++|+|+..-.+++.
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~ 106 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAELAI 106 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHHHHHHH
T ss_pred cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHHHHHHH
Confidence 68999999999953333221 122222 23566 5677899998875 899999999776666655
Q ss_pred hhccccCCCCEEEEec-CCCcHHHHHh
Q psy6714 195 DIKPVFNESNLLISVA-GGVPIKNMEQ 220 (303)
Q Consensus 195 eI~~~L~~g~IVVSia-aGV~ie~L~~ 220 (303)
... ..|+-|+.-. -..+.+..++
T Consensus 107 ~al---~aGkhVl~EKPla~~~~ea~~ 130 (361)
T 3u3x_A 107 RAM---QHGKDVLVDKPGMTSFDQLAK 130 (361)
T ss_dssp HHH---HTTCEEEEESCSCSSHHHHHH
T ss_pred HHH---HCCCeEEEeCCCCCCHHHHHH
Confidence 443 2455555321 1344544444
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0039 Score=61.30 Aligned_cols=87 Identities=9% Similarity=0.184 Sum_probs=56.9
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhc
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN----------IVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~ 197 (303)
..++|+|||+|.||.+ ++..++ .+.. .+...|+.+ .+..++++++||||++.....+.+ .+..
T Consensus 210 ~GktVgIiG~G~IG~~-vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~-~sL~eal~~ADVVilt~gt~~iI~--~e~l 285 (436)
T 3h9u_A 210 AGKTACVCGYGDVGKG-CAAALRGFGARVVVTEVDPINALQAAMEGYQV-LLVEDVVEEAHIFVTTTGNDDIIT--SEHF 285 (436)
T ss_dssp TTCEEEEECCSHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCSCSBC--TTTG
T ss_pred cCCEEEEEeeCHHHHH-HHHHHHHCCCEEEEECCChhhhHHHHHhCCee-cCHHHHHhhCCEEEECCCCcCccC--HHHH
Confidence 3678999999999994 554432 2221 233567765 578899999999999875443321 2334
Q ss_pred cccCCCCEEEEecCC---CcHHHHHhh
Q psy6714 198 PVFNESNLLISVAGG---VPIKNMEQA 221 (303)
Q Consensus 198 ~~L~~g~IVVSiaaG---V~ie~L~~~ 221 (303)
..++++.+||.+.-| |+.+.|...
T Consensus 286 ~~MK~gAIVINvgRg~vEID~~~L~~~ 312 (436)
T 3h9u_A 286 PRMRDDAIVCNIGHFDTEIQVAWLKAN 312 (436)
T ss_dssp GGCCTTEEEEECSSSGGGBCHHHHHHH
T ss_pred hhcCCCcEEEEeCCCCCccCHHHHHhh
Confidence 456788888877644 345566553
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0073 Score=59.97 Aligned_cols=64 Identities=8% Similarity=0.056 Sum_probs=41.9
Q ss_pred eEecChHHhhcCCCEEEEeeCCc------------------------------------------cHHHHHHhhccccCC
Q psy6714 165 KITFDNKEVTLNSEVIILAVKPH------------------------------------------IVPVALNDIKPVFNE 202 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVpP~------------------------------------------~v~~VL~eI~~~L~~ 202 (303)
..++|..+++++||+||++++.. .+.++++.|..+- +
T Consensus 66 ~~ttD~~eal~dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~-P 144 (480)
T 1obb_A 66 EKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLS-P 144 (480)
T ss_dssp EEESCHHHHHTTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHC-T
T ss_pred EEECCHHHHhCCCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHC-C
Confidence 34567678899999999999642 3345556666543 6
Q ss_pred CCEEEEecCCCcH--HHHHhhCCCCCceEEE
Q psy6714 203 SNLLISVAGGVPI--KNMEQALPKNSRIIRA 231 (303)
Q Consensus 203 g~IVVSiaaGV~i--e~L~~~l~~~~~VVr~ 231 (303)
+.+||-.++++.+ ..+.+ ++. .+++.+
T Consensus 145 ~A~ii~~TNPvdi~t~~~~k-~p~-~rviG~ 173 (480)
T 1obb_A 145 KAWYLQAANPIFEGTTLVTR-TVP-IKAVGF 173 (480)
T ss_dssp TCEEEECSSCHHHHHHHHHH-HSC-SEEEEE
T ss_pred CeEEEEeCCcHHHHHHHHHH-CCC-CcEEec
Confidence 7777878887765 33444 453 366655
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0041 Score=58.50 Aligned_cols=101 Identities=14% Similarity=0.198 Sum_probs=59.2
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcHHHH-------hh-----CCCeEecChHHhhcCCCEEEEeeCCc
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVSKAT-------GT-----MGAKITFDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~e~l-------~e-----~Gv~v~~d~~eav~~ADIVILAVpP~ 187 (303)
+|||+|||+|.+|.+ ++..+ +...+++ .. ..+.+..+..+++++||+||++....
T Consensus 9 ~~KI~IiGaG~vG~~-la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~ 87 (326)
T 2zqz_A 9 HQKVILVGDGAVGSS-YAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAP 87 (326)
T ss_dssp CCEEEEECCSHHHHH-HHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC
T ss_pred CCEEEEECCCHHHHH-HHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence 589999999999994 44321 1111111 11 23445556677899999999998421
Q ss_pred ----------------cHHHHHHhhccccCCCCEEEEecCCCcHH--HHHhh--CCCCCceEEEecCc
Q psy6714 188 ----------------IVPVALNDIKPVFNESNLLISVAGGVPIK--NMEQA--LPKNSRIIRAMPNT 235 (303)
Q Consensus 188 ----------------~v~~VL~eI~~~L~~g~IVVSiaaGV~ie--~L~~~--l~~~~~VVr~mPn~ 235 (303)
.+.++++.+..+- ++.+||-..+++..- .+.+. ++. .+++.++.++
T Consensus 88 ~k~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~~t~~~~k~s~~p~-~rviG~gt~L 153 (326)
T 2zqz_A 88 QKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVAANPVDILTYATWKLSGFPK-NRVVGSGTSL 153 (326)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHHHHHHHHHHHHCCCG-GGEEECTTHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCcHHHHHHHHHHHcCCCH-HHEEEccccc
Confidence 2344455555553 566666677777653 33343 442 3666664443
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0023 Score=59.88 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=45.2
Q ss_pred CCCcEEEEcCChhhHHHHHHHH------------hhcHHH---Hh----hC--CCeEecChHHhhcCCCEEEEeeCCccH
Q psy6714 131 NRSDKQIAGTTERGPGALIASL------------NIVSKA---TG----TM--GAKITFDNKEVTLNSEVIILAVKPHIV 189 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al------------~r~~e~---l~----e~--Gv~v~~d~~eav~~ADIVILAVpP~~v 189 (303)
..++|+|||+|.||.. .+..+ +++.++ +. .. ++. ..+.++++ ++|+||+|++...
T Consensus 124 ~~~~v~iIGaG~~a~~-~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~~- 199 (322)
T 1omo_A 124 NSSVFGFIGCGTQAYF-QLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSRK- 199 (322)
T ss_dssp TCCEEEEECCSHHHHH-HHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCSS-
T ss_pred CCCEEEEEcCcHHHHH-HHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCCC-
Confidence 3568999999999984 33322 222222 21 11 244 67788888 9999999998643
Q ss_pred HHHHHhhccccCCCCEEEEe
Q psy6714 190 PVALNDIKPVFNESNLLISV 209 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSi 209 (303)
.++. ...++++++|+.+
T Consensus 200 -pv~~--~~~l~~G~~V~~i 216 (322)
T 1omo_A 200 -PVVK--AEWVEEGTHINAI 216 (322)
T ss_dssp -CCBC--GGGCCTTCEEEEC
T ss_pred -ceec--HHHcCCCeEEEEC
Confidence 2221 2356788876643
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.017 Score=56.87 Aligned_cols=64 Identities=11% Similarity=0.025 Sum_probs=43.2
Q ss_pred CCcEEEEcC----ChhhHHHHHHHHhh-------------cHHH----HhhCCCe---EecChHHhhc--CCCEEEEeeC
Q psy6714 132 RSDKQIAGT----TERGPGALIASLNI-------------VSKA----TGTMGAK---ITFDNKEVTL--NSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIGl----G~MG~~~La~al~r-------------~~e~----l~e~Gv~---v~~d~~eav~--~ADIVILAVp 185 (303)
++||||||+ |.||.. .+..+.. ..++ ..++|+. +..|..++++ +.|+|++|+|
T Consensus 39 ~irvgiIG~g~~GG~~g~~-h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp 117 (479)
T 2nvw_A 39 PIRVGFVGLTSGKSWVAKT-HFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK 117 (479)
T ss_dssp CEEEEEECCCSTTSHHHHT-HHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred cCEEEEEcccCCCCHHHHH-HHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCC
Confidence 579999999 899873 3333221 1122 2356763 7788888885 6899999999
Q ss_pred CccHHHHHHhh
Q psy6714 186 PHIVPVALNDI 196 (303)
Q Consensus 186 P~~v~~VL~eI 196 (303)
+..-.+++...
T Consensus 118 ~~~H~~~~~~a 128 (479)
T 2nvw_A 118 VPEHYEVVKNI 128 (479)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 77666665443
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0065 Score=58.14 Aligned_cols=84 Identities=10% Similarity=0.142 Sum_probs=53.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHh-------------hcHH----HHhhCCCeEecChHHhhcCCCEEEEeeCCccH----H
Q psy6714 132 RSDKQIAGTTERGPGALIASLN-------------IVSK----ATGTMGAKITFDNKEVTLNSEVIILAVKPHIV----P 190 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~-------------r~~e----~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v----~ 190 (303)
+.||+|||+| +|. ..+..+. +..+ ..+++|+...+|.++++++.|+|++|+|...- .
T Consensus 7 ~~rv~VvG~G-~g~-~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~~h~~~~~ 84 (372)
T 4gmf_A 7 KQRVLIVGAK-FGE-MYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRSTVAGGAGT 84 (372)
T ss_dssp CEEEEEECST-TTH-HHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--CTTSHHH
T ss_pred CCEEEEEehH-HHH-HHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCcccchhHH
Confidence 6789999999 787 4443321 1112 23578999889999999999999999986543 3
Q ss_pred HHHHhhccccCCCCEEEEecCCCcHHHHHhh
Q psy6714 191 VALNDIKPVFNESNLLISVAGGVPIKNMEQA 221 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~ 221 (303)
++.... +..|+-|+ +-.+++.++.+++
T Consensus 85 ~~a~~a---l~aGkhVl-~EKPl~~~ea~~l 111 (372)
T 4gmf_A 85 QLARHF---LARGVHVI-QEHPLHPDDISSL 111 (372)
T ss_dssp HHHHHH---HHTTCEEE-EESCCCHHHHHHH
T ss_pred HHHHHH---HHcCCcEE-EecCCCHHHHHHH
Confidence 444332 23566555 3355776655554
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0095 Score=55.85 Aligned_cols=81 Identities=17% Similarity=0.246 Sum_probs=48.5
Q ss_pred CcEEEEcCChhhHHHHHHHH------------hhcHHH-------Hh------hCCCeEe-cChHHhhcCCCEEEEeeC-
Q psy6714 133 SDKQIAGTTERGPGALIASL------------NIVSKA-------TG------TMGAKIT-FDNKEVTLNSEVIILAVK- 185 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al------------~r~~e~-------l~------e~Gv~v~-~d~~eav~~ADIVILAVp- 185 (303)
|||+|||+|.||.+ ++..+ +...++ +. .....+. ++..+++++||+||++..
T Consensus 1 Mkv~ViGaG~vG~~-~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~ 79 (314)
T 3nep_X 1 MKVTVIGAGNVGAT-VAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGL 79 (314)
T ss_dssp CEEEEECCSHHHHH-HHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC
T ss_pred CEEEEECCCHHHHH-HHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCC
Confidence 89999999999994 44331 111111 11 1234443 456778999999999983
Q ss_pred Cc---------------cHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 PH---------------IVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 P~---------------~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
|+ .+.++.+.+..+ .++.+|+-..++++.
T Consensus 80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvd~ 123 (314)
T 3nep_X 80 PRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPDSTIIVVANPLDV 123 (314)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHTT-CTTCEEEECCSSHHH
T ss_pred CCCCCCCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEecCCchhH
Confidence 21 123334455554 366677767777765
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0092 Score=56.20 Aligned_cols=76 Identities=14% Similarity=0.108 Sum_probs=46.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhc---------HH---HHhhCCCeEe---cC---hHHhhcCCCEEEEeeCCccHHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNIV---------SK---ATGTMGAKIT---FD---NKEVTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r~---------~e---~l~e~Gv~v~---~d---~~eav~~ADIVILAVpP~~v~~V 192 (303)
+.|||.|||+|.||. .++..+.+. .+ ++++..-.+. .| ..++++++|+||.|+||..-..+
T Consensus 15 ~~mkilvlGaG~vG~-~~~~~L~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~~~~v 93 (365)
T 3abi_A 15 RHMKVLILGAGNIGR-AIAWDLKDEFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFLGFKS 93 (365)
T ss_dssp -CCEEEEECCSHHHH-HHHHHHTTTSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGGHHHH
T ss_pred CccEEEEECCCHHHH-HHHHHHhcCCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCcccchH
Confidence 478999999999999 465554221 12 2222211111 22 34567899999999999876666
Q ss_pred HHhhccccCCCCEEEEec
Q psy6714 193 LNDIKPVFNESNLLISVA 210 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSia 210 (303)
++... ..++-+|+++
T Consensus 94 ~~~~~---~~g~~yvD~s 108 (365)
T 3abi_A 94 IKAAI---KSKVDMVDVS 108 (365)
T ss_dssp HHHHH---HHTCEEEECC
T ss_pred HHHHH---hcCcceEeee
Confidence 65433 2455566543
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0029 Score=57.99 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=52.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcHH-------HHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCC
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVSK-------ATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESN 204 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~e-------~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~ 204 (303)
+|+|++||+|+||. .++.. + ..+ +..++|+.++.|..+++.++|+|+-|-.++.+.+.+..+ |..|+
T Consensus 12 ~~rV~i~G~GaIG~-~v~~~-~-~leLv~v~~~k~gelgv~a~~d~d~lla~pD~VVe~A~~~av~e~~~~i---L~aG~ 85 (253)
T 1j5p_A 12 HMTVLIIGMGNIGK-KLVEL-G-NFEKIYAYDRISKDIPGVVRLDEFQVPSDVSTVVECASPEAVKEYSLQI---LKNPV 85 (253)
T ss_dssp CCEEEEECCSHHHH-HHHHH-S-CCSEEEEECSSCCCCSSSEECSSCCCCTTCCEEEECSCHHHHHHHHHHH---TTSSS
T ss_pred cceEEEECcCHHHH-HHHhc-C-CcEEEEEEeccccccCceeeCCHHHHhhCCCEEEECCCHHHHHHHHHHH---HHCCC
Confidence 69999999999999 45544 2 111 111236677788888888999999999888777755554 44666
Q ss_pred EEEEecCC
Q psy6714 205 LLISVAGG 212 (303)
Q Consensus 205 IVVSiaaG 212 (303)
=||+++.|
T Consensus 86 dvv~~S~g 93 (253)
T 1j5p_A 86 NYIIISTS 93 (253)
T ss_dssp EEEECCGG
T ss_pred CEEEcChh
Confidence 56655544
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.019 Score=46.41 Aligned_cols=80 Identities=15% Similarity=0.076 Sum_probs=47.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh----------cHH---HHhhCCCeEe-cC--hHHh-----hcCCCEEEEeeCCccHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI----------VSK---ATGTMGAKIT-FD--NKEV-----TLNSEVIILAVKPHIVP 190 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r----------~~e---~l~e~Gv~v~-~d--~~ea-----v~~ADIVILAVpP~~v~ 190 (303)
+++|.|+|+|.+|. .++..+.. +.+ .+.+.|+.+. .| ..+. ++++|+||++++.+...
T Consensus 7 ~~~viIiG~G~~G~-~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n 85 (140)
T 3fwz_A 7 CNHALLVGYGRVGS-LLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEA 85 (140)
T ss_dssp CSCEEEECCSHHHH-HHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHH
T ss_pred CCCEEEECcCHHHH-HHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHH
Confidence 56799999999999 57765432 222 3446677543 22 1222 46899999999876544
Q ss_pred H-HHHhhccccCCCCEEEEecCCC
Q psy6714 191 V-ALNDIKPVFNESNLLISVAGGV 213 (303)
Q Consensus 191 ~-VL~eI~~~L~~g~IVVSiaaGV 213 (303)
. ++..++. +.++.-||..+...
T Consensus 86 ~~~~~~a~~-~~~~~~iiar~~~~ 108 (140)
T 3fwz_A 86 GEIVASARA-KNPDIEIIARAHYD 108 (140)
T ss_dssp HHHHHHHHH-HCSSSEEEEEESSH
T ss_pred HHHHHHHHH-HCCCCeEEEEECCH
Confidence 3 3333333 33444455444433
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0029 Score=58.10 Aligned_cols=84 Identities=17% Similarity=0.154 Sum_probs=53.0
Q ss_pred CCcEEEEcC-ChhhHHHHHHHHhhcH------------HH-----H------hhCCCeEecChHHhhcCCCEEEEeeCCc
Q psy6714 132 RSDKQIAGT-TERGPGALIASLNIVS------------KA-----T------GTMGAKITFDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 132 ~mkIgIIGl-G~MG~~~La~al~r~~------------e~-----l------~e~Gv~v~~d~~eav~~ADIVILAVpP~ 187 (303)
+|||+|+|+ |.||. .++..+.... +. + ...|+.+..+..++++++|+||-++.|.
T Consensus 5 ~mkV~V~Ga~G~mG~-~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft~p~ 83 (273)
T 1dih_A 5 NIRVAIAGAGGRMGR-QLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPE 83 (273)
T ss_dssp BEEEEETTTTSHHHH-HHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSCHH
T ss_pred CcEEEEECCCCHHHH-HHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcCChH
Confidence 589999998 99999 5665432111 01 0 1124555667777788999999777887
Q ss_pred cHHHHHHhhccccCCCCEEEEecCCCcHHHHH
Q psy6714 188 IVPVALNDIKPVFNESNLLISVAGGVPIKNME 219 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~ 219 (303)
...+.+..... .++-+|.-..|.+.+.+.
T Consensus 84 ~~~~~~~~a~~---~G~~vVigTtG~~~e~~~ 112 (273)
T 1dih_A 84 GTLNHLAFCRQ---HGKGMVIGTTGFDEAGKQ 112 (273)
T ss_dssp HHHHHHHHHHH---TTCEEEECCCCCCHHHHH
T ss_pred HHHHHHHHHHh---CCCCEEEECCCCCHHHHH
Confidence 77777665443 344445434478776443
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.004 Score=51.59 Aligned_cols=101 Identities=12% Similarity=0.040 Sum_probs=62.4
Q ss_pred CCcEEEEcC----ChhhHHHHHHHHhhc--------HHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccc
Q psy6714 132 RSDKQIAGT----TERGPGALIASLNIV--------SKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPV 199 (303)
Q Consensus 132 ~mkIgIIGl----G~MG~~~La~al~r~--------~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~ 199 (303)
..+|+|||+ |.+|. .++..+... ...-.-.|+.+..+..|+.+..|+++++||+..+.++++++...
T Consensus 22 p~~iaVVGas~~~g~~G~-~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi~vp~~~~~~vv~~~~~~ 100 (144)
T 2d59_A 22 YKKIALVGASPKPERDAN-IVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKPKLTMEYVEQAIKK 100 (144)
T ss_dssp CCEEEEETCCSCTTSHHH-HHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEccCCCCCchHH-HHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcCCCCCEEEEEeCHHHHHHHHHHHHHc
Confidence 457999999 78998 455443221 11101136666677888878899999999999999999887653
Q ss_pred cCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHH
Q psy6714 200 FNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPA 237 (303)
Q Consensus 200 L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~ 237 (303)
- -..+| +..|...+.+.+.+.. ..+--..||...
T Consensus 101 g-i~~i~--~~~g~~~~~l~~~a~~-~Gi~vvGpnc~g 134 (144)
T 2d59_A 101 G-AKVVW--FQYNTYNREASKKADE-AGLIIVANRCMM 134 (144)
T ss_dssp T-CSEEE--ECTTCCCHHHHHHHHH-TTCEEEESCCHH
T ss_pred C-CCEEE--ECCCchHHHHHHHHHH-cCCEEEcCCchh
Confidence 2 23344 3455555556555432 112223377553
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.013 Score=50.86 Aligned_cols=81 Identities=12% Similarity=0.075 Sum_probs=49.6
Q ss_pred CcEEEEcCChhhHHHHHHHHh----------hcHHH---Hh-hCCCeEe-cC---h---HHh-hcCCCEEEEeeCCccHH
Q psy6714 133 SDKQIAGTTERGPGALIASLN----------IVSKA---TG-TMGAKIT-FD---N---KEV-TLNSEVIILAVKPHIVP 190 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~----------r~~e~---l~-e~Gv~v~-~d---~---~ea-v~~ADIVILAVpP~~v~ 190 (303)
|||.|+|+|.+|. .++..+. ++.++ +. ..|+.+. .| . .++ ++++|+||++++.+...
T Consensus 1 M~iiIiG~G~~G~-~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n 79 (218)
T 3l4b_C 1 MKVIIIGGETTAY-YLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVN 79 (218)
T ss_dssp CCEEEECCHHHHH-HHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHH
T ss_pred CEEEEECCCHHHH-HHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHH
Confidence 7899999999999 5766542 22222 22 3466432 22 1 222 57899999999988777
Q ss_pred HHHHhhccccCCCCEEEEecCCCc
Q psy6714 191 VALNDIKPVFNESNLLISVAGGVP 214 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSiaaGV~ 214 (303)
.++..+...+.+..-||..+....
T Consensus 80 ~~~~~~a~~~~~~~~iia~~~~~~ 103 (218)
T 3l4b_C 80 LFIAQLVMKDFGVKRVVSLVNDPG 103 (218)
T ss_dssp HHHHHHHHHTSCCCEEEECCCSGG
T ss_pred HHHHHHHHHHcCCCeEEEEEeCcc
Confidence 666555443334444555544443
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0073 Score=57.68 Aligned_cols=148 Identities=16% Similarity=0.179 Sum_probs=82.8
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhcHH--------------HHhh------CCCeEe-cChHHhhcCCCEEEEeeCCccH
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIVSK--------------ATGT------MGAKIT-FDNKEVTLNSEVIILAVKPHIV 189 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~~e--------------~l~e------~Gv~v~-~d~~eav~~ADIVILAVpP~~v 189 (303)
|.|||||| +|..|. .|.+.+..... .+.+ ..+.+. .+..+..+++|+||+|+|...-
T Consensus 13 ~~~V~IvGAtG~vG~-ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~~~s 91 (351)
T 1vkn_A 13 MIRAGIIGATGYTGL-ELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS 91 (351)
T ss_dssp CEEEEEESTTSHHHH-HHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH
T ss_pred eeEEEEECCCCHHHH-HHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCcHHH
Confidence 56999997 899999 46654432211 0110 122221 2344444789999999999988
Q ss_pred HHHHHhhccccCCCCEEEEecCCCc---HHHHHhhCCCCCce------EEEecCcH-HhhhCCcEEEEeCCCCCHHHH-H
Q psy6714 190 PVALNDIKPVFNESNLLISVAGGVP---IKNMEQALPKNSRI------IRAMPNTP-ALVRQGASVFVRGSSASDQDA-Q 258 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSiaaGV~---ie~L~~~l~~~~~V------Vr~mPn~p-~~v~~G~til~~g~~~~~e~~-e 258 (303)
.++...+ .+..||+..+..- .+..+++.+....+ +..+|-.. ..+..+ . ++.++++..... -
T Consensus 92 ~~~~~~~-----~g~~VIDlSsdfRl~~~~~y~~~y~~~h~~p~~~~~~yglPE~n~e~i~~a-~-iIANPgC~~t~~~l 164 (351)
T 1vkn_A 92 YDLVREL-----KGVKIIDLGADFRFDDPGVYREWYGKELSGYENIKRVYGLPELHREEIKNA-Q-VVGNPGCYPTSVIL 164 (351)
T ss_dssp HHHHTTC-----CSCEEEESSSTTTCSSHHHHHHHHCCCCTTGGGCCEEECCHHHHHHHHTTC-S-EEECCCHHHHHHHH
T ss_pred HHHHHHh-----CCCEEEECChhhhCCchhhhhhhcCCCCCchhhcCCceECCccCHHHhccC-C-EEeCCChHHHHHHH
Confidence 8877665 5778998877642 24455554421222 66666543 234433 2 334455555543 4
Q ss_pred HHHHHHHhcCCcEEcCCCCchhhhhhccchH
Q psy6714 259 TVINLFKSVGTCEEVPEYLLDGITGLSGSGP 289 (303)
Q Consensus 259 ~V~~Lfs~iG~~v~vdE~~~Da~tAlsGsgP 289 (303)
.+..|++..+.. .+.-..|...++||.|-
T Consensus 165 aL~PL~~~~~i~--~~~iiv~t~sgvSGAG~ 193 (351)
T 1vkn_A 165 ALAPALKHNLVD--PETILVDAKSGVSGAGR 193 (351)
T ss_dssp HHHHHHHTTCSC--CSEEEEEEEEEGGGGCS
T ss_pred HHHHHHHcCCCC--CCEEEEEEEeeccccCc
Confidence 466666553321 11224556666766654
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0049 Score=58.26 Aligned_cols=76 Identities=13% Similarity=0.101 Sum_probs=46.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcH----------------HHHhh------------------CCCeEecChHHhhcCC
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVS----------------KATGT------------------MGAKITFDNKEVTLNS 177 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~----------------e~l~e------------------~Gv~v~~d~~eav~~A 177 (303)
|+||||+|.|.||. .+++.+.... ..+.. .++.+..+..+++.++
T Consensus 1 mikVgIiGaG~iG~-~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~v 79 (337)
T 1cf2_P 1 MKAVAINGYGTVGK-RVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEA 79 (337)
T ss_dssp CEEEEEECCSTTHH-HHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTC
T ss_pred CeEEEEEeECHHHH-HHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCC
Confidence 57899999999999 5665432110 01111 1222323555667789
Q ss_pred CEEEEeeCCccHHHHHHhhccccCCCCEEEEecC
Q psy6714 178 EVIILAVKPHIVPVALNDIKPVFNESNLLISVAG 211 (303)
Q Consensus 178 DIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaa 211 (303)
|+||.|++.....+....+.. .|+.||...+
T Consensus 80 DvV~~atp~~~~~~~a~~~l~---aG~~VId~sp 110 (337)
T 1cf2_P 80 DIVIDCTPEGIGAKNLKMYKE---KGIKAIFQGG 110 (337)
T ss_dssp SEEEECCSTTHHHHHHHHHHH---HTCCEEECTT
T ss_pred CEEEECCCchhhHHHHHHHHH---cCCEEEEecC
Confidence 999999998877777655432 3444554443
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.01 Score=56.07 Aligned_cols=63 Identities=8% Similarity=0.046 Sum_probs=39.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcH----------------HHHhhCCCeEec-----------------ChHHhhcCCC
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVS----------------KATGTMGAKITF-----------------DNKEVTLNSE 178 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~----------------e~l~e~Gv~v~~-----------------d~~eav~~AD 178 (303)
|+||||+|+|.||. .+++.+.... ..+...|+.+.. +.+++.+++|
T Consensus 1 ~ikVgIiGaG~iG~-~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vD 79 (340)
T 1b7g_O 1 MVNVAVNGYGTIGK-RVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSD 79 (340)
T ss_dssp CEEEEEECCSHHHH-HHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCS
T ss_pred CeEEEEEecCHHHH-HHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCC
Confidence 46899999999999 5665532211 112233444332 3334445799
Q ss_pred EEEEeeCCccHHHHHHh
Q psy6714 179 VIILAVKPHIVPVALND 195 (303)
Q Consensus 179 IVILAVpP~~v~~VL~e 195 (303)
+||+|++.....+....
T Consensus 80 vV~~aTp~~~s~~~a~~ 96 (340)
T 1b7g_O 80 IVVDTTPNGVGAQYKPI 96 (340)
T ss_dssp EEEECCSTTHHHHHHHH
T ss_pred EEEECCCCchhHHHHHH
Confidence 99999998876666644
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.011 Score=58.31 Aligned_cols=74 Identities=18% Similarity=0.123 Sum_probs=45.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHh------------hcHHH----HhhC-C----------------------CeEecChHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLN------------IVSKA----TGTM-G----------------------AKITFDNKE 172 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~------------r~~e~----l~e~-G----------------------v~v~~d~~e 172 (303)
.+||||||+|.||. .++..+. ++.++ +.+. | ..++.|.++
T Consensus 23 ~IRVGIIGaG~iG~-~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~ee 101 (446)
T 3upl_A 23 PIRIGLIGAGEMGT-DIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDL 101 (446)
T ss_dssp CEEEEEECCSHHHH-HHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHH
T ss_pred ceEEEEECChHHHH-HHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHH
Confidence 57999999999999 4554432 11122 1122 4 346778888
Q ss_pred hhc--CCCEEEEeeCCc-cHHHHHHhhccccCCCCEEEEe
Q psy6714 173 VTL--NSEVIILAVKPH-IVPVALNDIKPVFNESNLLISV 209 (303)
Q Consensus 173 av~--~ADIVILAVpP~-~v~~VL~eI~~~L~~g~IVVSi 209 (303)
+++ +.|+|++|+++. .-.+++.. .+..|+-|+..
T Consensus 102 LL~d~dIDaVviaTp~p~~H~e~a~~---AL~AGKHVv~~ 138 (446)
T 3upl_A 102 ILSNPLIDVIIDATGIPEVGAETGIA---AIRNGKHLVMM 138 (446)
T ss_dssp HHTCTTCCEEEECSCCHHHHHHHHHH---HHHTTCEEEEC
T ss_pred HhcCCCCCEEEEcCCChHHHHHHHHH---HHHcCCcEEec
Confidence 886 589999999753 22333322 23356667643
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.013 Score=58.05 Aligned_cols=65 Identities=14% Similarity=0.197 Sum_probs=45.8
Q ss_pred eEecChHHhhcCCCEEEEeeCCc------------------------------------cHHHHHHhhccccCCCCEEEE
Q psy6714 165 KITFDNKEVTLNSEVIILAVKPH------------------------------------IVPVALNDIKPVFNESNLLIS 208 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVpP~------------------------------------~v~~VL~eI~~~L~~g~IVVS 208 (303)
..+.|..+++++||+||++++.. .+.++++.+..+- ++.+||-
T Consensus 91 ~~t~D~~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~-P~A~ii~ 169 (472)
T 1u8x_X 91 AATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLN 169 (472)
T ss_dssp EEESCHHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEE
T ss_pred EEECCHHHHHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHC-CCeEEEE
Confidence 34457778899999999999873 2456666676644 7788888
Q ss_pred ecCCCcH--HHHHhhCCCCCceEEE
Q psy6714 209 VAGGVPI--KNMEQALPKNSRIIRA 231 (303)
Q Consensus 209 iaaGV~i--e~L~~~l~~~~~VVr~ 231 (303)
.++++.+ ..+.+..|. .+++.+
T Consensus 170 ~TNPvdi~T~~~~k~~p~-~rViG~ 193 (472)
T 1u8x_X 170 YSNPAAIVAEATRRLRPN-SKILNI 193 (472)
T ss_dssp CCSCHHHHHHHHHHHSTT-CCEEEC
T ss_pred eCCcHHHHHHHHHHhCCC-CCEEEe
Confidence 8888876 445566653 466665
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0066 Score=55.65 Aligned_cols=71 Identities=6% Similarity=0.054 Sum_probs=45.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhc--HH-----------H-HhhCCCeEecChHHhhc--CCCEEEEeeCCccHHHHHHh
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIV--SK-----------A-TGTMGAKITFDNKEVTL--NSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~--~e-----------~-l~e~Gv~v~~d~~eav~--~ADIVILAVpP~~v~~VL~e 195 (303)
++||||||+|.||.. .+..+... .. . ....|+. ..|.+++++ +.|+|++|+|+..-.+++..
T Consensus 7 ~~rvgiIG~G~iG~~-~~~~l~~~~~~~~~~lvav~d~~~~a~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~~~~~~ 84 (294)
T 1lc0_A 7 KFGVVVVGVGRAGSV-RLRDLKDPRSAAFLNLIGFVSRRELGSLDEVR-QISLEDALRSQEIDVAYICSESSSHEDYIRQ 84 (294)
T ss_dssp SEEEEEECCSHHHHH-HHHHHTSHHHHTTEEEEEEECSSCCCEETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHHHHHH
T ss_pred cceEEEEEEcHHHHH-HHHHHhccccCCCEEEEEEECchHHHHHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHHHHHHH
Confidence 679999999999984 33333221 00 0 1123444 367788876 68999999997766666554
Q ss_pred hccccCCCCEEE
Q psy6714 196 IKPVFNESNLLI 207 (303)
Q Consensus 196 I~~~L~~g~IVV 207 (303)
.. ..|+-|+
T Consensus 85 al---~aGkhVl 93 (294)
T 1lc0_A 85 FL---QAGKHVL 93 (294)
T ss_dssp HH---HTTCEEE
T ss_pred HH---HCCCcEE
Confidence 33 3456455
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0067 Score=57.45 Aligned_cols=82 Identities=11% Similarity=0.051 Sum_probs=50.5
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcHHH-------Hh---hC----CCeEecChHHhhcCCCEEEEeeC
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVSKA-------TG---TM----GAKITFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~e~-------l~---e~----Gv~v~~d~~eav~~ADIVILAVp 185 (303)
.|||+|||+|.||.+ ++..+ +...++ +. .+ .+..+.|.++ +++||+||++..
T Consensus 21 ~~kV~ViGaG~vG~~-~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG 98 (330)
T 3ldh_A 21 YNKITVVGCDAVGMA-DAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG 98 (330)
T ss_dssp CCEEEEESTTHHHHH-HHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred CCEEEEECCCHHHHH-HHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence 689999999999994 44331 111111 11 11 1233456654 899999999963
Q ss_pred -C---------------ccHHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 186 -P---------------HIVPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 186 -P---------------~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
| ..+.++++++..+ .++.+|+-..+++++-
T Consensus 99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvtNPvdi~ 144 (330)
T 3ldh_A 99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHPELGTDK 144 (330)
T ss_dssp CCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHHH
T ss_pred CCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCCCccHHH
Confidence 2 1245566677766 4677777777777653
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.011 Score=56.38 Aligned_cols=147 Identities=10% Similarity=0.152 Sum_probs=81.6
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhcHH--------------HHh----h-CC-----CeEecChHHhhcCCCEEEEeeCC
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIVSK--------------ATG----T-MG-----AKITFDNKEVTLNSEVIILAVKP 186 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~~e--------------~l~----e-~G-----v~v~~d~~eav~~ADIVILAVpP 186 (303)
++||+|+| +|.+|. .+++.+..... ++. . .| +.+ .+ .+..+++|+||+|++.
T Consensus 16 ~~kV~IiGAtG~iG~-~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~-~~-~~~~~~vDvVf~atp~ 92 (359)
T 1xyg_A 16 DIRIGLLGASGYTGA-EIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVS-VK-DADFSTVDAVFCCLPH 92 (359)
T ss_dssp CEEEEEECCSSHHHH-HHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBC-GG-GCCGGGCSEEEECCCT
T ss_pred CcEEEEECcCCHHHH-HHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCccccccee-cc-hhHhcCCCEEEEcCCc
Confidence 46899999 999999 56655422110 010 0 11 111 22 3345689999999998
Q ss_pred ccHHHHHHhhccccCCCCEEEEecCCCc---HHHHHhhCCCC-------CceEEEecCcHH-hhhCCcEEEEeCCCCCHH
Q psy6714 187 HIVPVALNDIKPVFNESNLLISVAGGVP---IKNMEQALPKN-------SRIIRAMPNTPA-LVRQGASVFVRGSSASDQ 255 (303)
Q Consensus 187 ~~v~~VL~eI~~~L~~g~IVVSiaaGV~---ie~L~~~l~~~-------~~VVr~mPn~p~-~v~~G~til~~g~~~~~e 255 (303)
..-.+....+ ..|..||+..+... .+.++++.+.. ..++..+|-..- .+... .+ +..+++...
T Consensus 93 ~~s~~~a~~~----~aG~~VId~sa~~R~~~~~~y~~~y~~~~~~~~~l~~~vygvpE~n~~~i~~~-~i-IanpgC~tt 166 (359)
T 1xyg_A 93 GTTQEIIKEL----PTALKIVDLSADFRLRNIAEYEEWYGQPHKAVELQKEVVYGLTEILREDIKKA-RL-VANPGCYPT 166 (359)
T ss_dssp TTHHHHHHTS----CTTCEEEECSSTTTCSCHHHHHHHHSSCCSCHHHHTTCEECCHHHHHHHHHTC-SE-EECCCHHHH
T ss_pred hhHHHHHHHH----hCCCEEEECCccccCCchhhhhhhhcCCcCChhhcCCceEECCccCHHHhccC-CE-EECCCcHHH
Confidence 8877776654 36778888776543 24455555321 135666654432 23332 23 344555555
Q ss_pred HHHH-HHHHHHhcCCcEEcCCCCchhhhhhccchH
Q psy6714 256 DAQT-VINLFKSVGTCEEVPEYLLDGITGLSGSGP 289 (303)
Q Consensus 256 ~~e~-V~~Lfs~iG~~v~vdE~~~Da~tAlsGsgP 289 (303)
.... +..|.+..|.. .+.-.++...++||.|-
T Consensus 167 ~~~~~l~pL~~~~~i~--~~~i~v~t~~~~SGaG~ 199 (359)
T 1xyg_A 167 TIQLPLVPLLKANLIK--HENIIIDAKSGVSGAGR 199 (359)
T ss_dssp HHHHHHHHHHHTTCBC--SSSCEEEEEEEGGGGCS
T ss_pred HHHHHHHHHHHcCCCC--CCeEEEEEEEEccccCc
Confidence 5444 55555554421 12445666666666554
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0036 Score=51.74 Aligned_cols=100 Identities=9% Similarity=0.098 Sum_probs=62.9
Q ss_pred CCcEEEEcC----ChhhHHHHHHHHhh--------cHHH-Hhh-CCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhc
Q psy6714 132 RSDKQIAGT----TERGPGALIASLNI--------VSKA-TGT-MGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 132 ~mkIgIIGl----G~MG~~~La~al~r--------~~e~-l~e-~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~ 197 (303)
..+|+|||+ |.||. .++..+.. +..+ ..+ .|+.+..+..|+.+..|+++++||+..+.++++++.
T Consensus 13 p~~vaVvGas~~~g~~G~-~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el~~~vDlavi~vp~~~~~~v~~~~~ 91 (140)
T 1iuk_A 13 AKTIAVLGAHKDPSRPAH-YVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRPPSALMDHLPEVL 91 (140)
T ss_dssp CCEEEEETCCSSTTSHHH-HHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSCHHHHTTTHHHHH
T ss_pred CCEEEEECCCCCCCChHH-HHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHCCCCCCEEEEEeCHHHHHHHHHHHH
Confidence 457999999 79999 45544322 1111 111 467777788888788999999999999999998776
Q ss_pred cccCCCCEEEEecCCCcHHHHHhhCCC-CCceEEEecCcHH
Q psy6714 198 PVFNESNLLISVAGGVPIKNMEQALPK-NSRIIRAMPNTPA 237 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV~ie~L~~~l~~-~~~VVr~mPn~p~ 237 (303)
..- -+.+|+ ..|...+.+.+.+.. +..+ ..||...
T Consensus 92 ~~g-i~~i~~--~~g~~~~~~~~~a~~~Gir~--vgpnc~g 127 (140)
T 1iuk_A 92 ALR-PGLVWL--QSGIRHPEFEKALKEAGIPV--VADRCLM 127 (140)
T ss_dssp HHC-CSCEEE--CTTCCCHHHHHHHHHTTCCE--EESCCHH
T ss_pred HcC-CCEEEE--cCCcCHHHHHHHHHHcCCEE--EcCCccc
Confidence 532 334554 345545555554432 2232 3467554
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.014 Score=54.18 Aligned_cols=71 Identities=14% Similarity=0.110 Sum_probs=45.9
Q ss_pred CcEEEEcCChhhHHHHHHHHh-------------------hcH----HHHhhCCC-eEecChHHhhc--CCCEEEEeeCC
Q psy6714 133 SDKQIAGTTERGPGALIASLN-------------------IVS----KATGTMGA-KITFDNKEVTL--NSEVIILAVKP 186 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~-------------------r~~----e~l~e~Gv-~v~~d~~eav~--~ADIVILAVpP 186 (303)
.||||||+|.||. .-+..++ .+. +..+++|+ .+..|.+++++ +.|+|++|+|+
T Consensus 26 irvgiIG~G~ig~-~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP~ 104 (393)
T 4fb5_A 26 LGIGLIGTGYMGK-CHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTPN 104 (393)
T ss_dssp CEEEEECCSHHHH-HHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSCG
T ss_pred ccEEEEcCCHHHH-HHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCCh
Confidence 4799999999997 3332211 111 12346687 47788888886 57999999997
Q ss_pred ccHHHHHHhhccccCCCCEEE
Q psy6714 187 HIVPVALNDIKPVFNESNLLI 207 (303)
Q Consensus 187 ~~v~~VL~eI~~~L~~g~IVV 207 (303)
..=.+++.... ..|+-|+
T Consensus 105 ~~H~~~a~~al---~aGkhVl 122 (393)
T 4fb5_A 105 QFHAEMAIAAL---EAGKHVW 122 (393)
T ss_dssp GGHHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHHHH---hcCCeEE
Confidence 77666654433 2455555
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0046 Score=57.40 Aligned_cols=73 Identities=10% Similarity=-0.019 Sum_probs=46.8
Q ss_pred CCCcEEEEcCChhhHHHHHHHH----------hhc----HHHH----hhCCC--eEecChHHhhc--CCCEEEEeeCCcc
Q psy6714 131 NRSDKQIAGTTERGPGALIASL----------NIV----SKAT----GTMGA--KITFDNKEVTL--NSEVIILAVKPHI 188 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al----------~r~----~e~l----~e~Gv--~v~~d~~eav~--~ADIVILAVpP~~ 188 (303)
|++||||||+|.+|. .++..+ ++. .+++ .++|+ .+..|.+++++ +.|+|++|+|+..
T Consensus 1 M~~rvgiiG~G~~~~-~~~~~l~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~ 79 (337)
T 3ip3_A 1 MSLKICVIGSSGHFR-YALEGLDEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSL 79 (337)
T ss_dssp -CEEEEEECSSSCHH-HHHTTCCTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHH
T ss_pred CceEEEEEccchhHH-HHHHhcCCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcch
Confidence 467999999999998 444321 111 1222 23464 67788888886 4899999999776
Q ss_pred HHHHHHhhccccCCCCEEE
Q psy6714 189 VPVALNDIKPVFNESNLLI 207 (303)
Q Consensus 189 v~~VL~eI~~~L~~g~IVV 207 (303)
-.+++.... ..|+-|+
T Consensus 80 H~~~~~~al---~aGkhVl 95 (337)
T 3ip3_A 80 NGKILLEAL---ERKIHAF 95 (337)
T ss_dssp HHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHH---HCCCcEE
Confidence 555554433 2455455
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.014 Score=55.13 Aligned_cols=82 Identities=15% Similarity=0.216 Sum_probs=51.2
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcHHHH-------h---h--CCCeEecChHHhhcCCCEEEEeeC-C
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVSKAT-------G---T--MGAKITFDNKEVTLNSEVIILAVK-P 186 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~e~l-------~---e--~Gv~v~~d~~eav~~ADIVILAVp-P 186 (303)
+|||+|||+|.||.+ ++..+ +...+++ . . .++.+..+..+++++||+||++.. |
T Consensus 9 ~~kV~ViGaG~vG~~-~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~~ 87 (326)
T 3vku_A 9 HQKVILVGDGAVGSS-YAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGAP 87 (326)
T ss_dssp CCEEEEECCSHHHHH-HHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred CCEEEEECCCHHHHH-HHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCCC
Confidence 689999999999994 55432 1111111 1 1 145555666778999999999873 2
Q ss_pred ---------------ccHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 187 ---------------HIVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 187 ---------------~~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
..+.++.+.+..+- ++.+|+-..+++++
T Consensus 88 ~kpG~tR~dL~~~N~~I~~~i~~~i~~~~-p~a~ilvvtNPvdi 130 (326)
T 3vku_A 88 QKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVAANPVDI 130 (326)
T ss_dssp ----------------CHHHHHHHHHTTT-CCSEEEECSSSHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEccCchHH
Confidence 12344555565543 56677777777765
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0053 Score=57.88 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=43.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcHHHHhh------------------------------C-CCeEec--ChHHhhc--C
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVSKATGT------------------------------M-GAKITF--DNKEVTL--N 176 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~e~l~e------------------------------~-Gv~v~~--d~~eav~--~ 176 (303)
|+||||||+|.||.. ++..+....+.+++ . ...+.. |..++++ +
T Consensus 2 mirvgIiG~G~VG~~-~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~ 80 (327)
T 3do5_A 2 MIKIAIVGFGTVGQG-VAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSAD 80 (327)
T ss_dssp CEEEEEECCSHHHHH-HHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSC
T ss_pred cEEEEEEeccHHHHH-HHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCC
Confidence 789999999999994 55444332111100 0 111223 6677765 5
Q ss_pred CCEEEEeeCCccH-HHHHHhhccccCCCCEEEEe
Q psy6714 177 SEVIILAVKPHIV-PVALNDIKPVFNESNLLISV 209 (303)
Q Consensus 177 ADIVILAVpP~~v-~~VL~eI~~~L~~g~IVVSi 209 (303)
.|+|+.|+|+..- .+..+.+...+..|+-||+.
T Consensus 81 iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~ 114 (327)
T 3do5_A 81 YDVLIEASVTRVDGGEGVNYIREALKRGKHVVTS 114 (327)
T ss_dssp CSEEEECCCCC----CHHHHHHHHHTTTCEEEEC
T ss_pred CCEEEECCCCcccchhHHHHHHHHHHCCCeEEec
Confidence 8999999987641 11222223345567767644
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0051 Score=59.43 Aligned_cols=74 Identities=11% Similarity=0.219 Sum_probs=46.7
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcH---HHHhhCCCeEec-------------------------ChHHh
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVS---KATGTMGAKITF-------------------------DNKEV 173 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~---e~l~e~Gv~v~~-------------------------d~~ea 173 (303)
..||+|||+|.||.. ++..+ ++.. +.+.++|..... +..++
T Consensus 184 ~~kV~ViG~G~iG~~-aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~ 262 (381)
T 3p2y_A 184 PASALVLGVGVAGLQ-ALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDA 262 (381)
T ss_dssp CCEEEEESCSHHHHH-HHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECchHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHH
Confidence 468999999999984 33321 2222 345566765422 34578
Q ss_pred hcCCCEEEEee--CC----c-cHHHHHHhhccccCCCCEEEEec
Q psy6714 174 TLNSEVIILAV--KP----H-IVPVALNDIKPVFNESNLLISVA 210 (303)
Q Consensus 174 v~~ADIVILAV--pP----~-~v~~VL~eI~~~L~~g~IVVSia 210 (303)
++++||||.++ |. . ..++.++. ++++.+||.++
T Consensus 263 l~~aDIVI~tv~iPg~~ap~Lvt~emv~~----MkpGsVIVDvA 302 (381)
T 3p2y_A 263 ITKFDIVITTALVPGRPAPRLVTAAAATG----MQPGSVVVDLA 302 (381)
T ss_dssp HTTCSEEEECCCCTTSCCCCCBCHHHHHT----SCTTCEEEETT
T ss_pred HhcCCEEEECCCCCCcccceeecHHHHhc----CCCCcEEEEEe
Confidence 89999999987 32 1 12444444 55788888764
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.011 Score=56.12 Aligned_cols=83 Identities=18% Similarity=0.180 Sum_probs=48.4
Q ss_pred CCCcEEEEcC-ChhhHHHHHHHH------------hhcHHH-------Hhh-----CCCeEecChHHhhcCCCEEEEeeC
Q psy6714 131 NRSDKQIAGT-TERGPGALIASL------------NIVSKA-------TGT-----MGAKITFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 131 ~~mkIgIIGl-G~MG~~~La~al------------~r~~e~-------l~e-----~Gv~v~~d~~eav~~ADIVILAVp 185 (303)
.+|||+|||+ |.+|.. ++.++ +...++ +.. ..+..+.+..+++++||+||++.-
T Consensus 7 ~~~KV~ViGaaG~VG~~-~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG 85 (343)
T 3fi9_A 7 TEEKLTIVGAAGMIGSN-MAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG 85 (343)
T ss_dssp CSSEEEEETTTSHHHHH-HHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred CCCEEEEECCCChHHHH-HHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence 4689999997 999994 44221 111111 111 234555677788999999999972
Q ss_pred -C---c------------cHHHHHHhhccccCCCCE-EEEecCCCcH
Q psy6714 186 -P---H------------IVPVALNDIKPVFNESNL-LISVAGGVPI 215 (303)
Q Consensus 186 -P---~------------~v~~VL~eI~~~L~~g~I-VVSiaaGV~i 215 (303)
| . .+.++++.+..+- ++.+ |+-+.+++++
T Consensus 86 ~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~-p~a~~vlvvsNPvd~ 131 (343)
T 3fi9_A 86 APRKEGMTREDLLKGNAEIAAQLGKDIKSYC-PDCKHVIIIFNPADI 131 (343)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHC-TTCCEEEECSSSHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhc-cCcEEEEEecCchHH
Confidence 2 1 1233444555544 4443 5556677654
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.014 Score=54.91 Aligned_cols=86 Identities=12% Similarity=0.132 Sum_probs=53.5
Q ss_pred CCcEEEEc-CChhhHHHHH----HHHh---------------------hcHHH----HhhCCC-eEecChHHhhcC--CC
Q psy6714 132 RSDKQIAG-TTERGPGALI----ASLN---------------------IVSKA----TGTMGA-KITFDNKEVTLN--SE 178 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La----~al~---------------------r~~e~----l~e~Gv-~v~~d~~eav~~--AD 178 (303)
.+|||||| +|.||....+ ..+. ++.++ .+++|+ .+..|.++++++ .|
T Consensus 6 ~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD 85 (383)
T 3oqb_A 6 RLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDT 85 (383)
T ss_dssp EEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCC
T ss_pred eeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCC
Confidence 57899999 9999983022 2111 11222 235788 477889998865 89
Q ss_pred EEEEeeCCccHHHHHHhhccccCCCCEEEEecC--CCcHHHHHhh
Q psy6714 179 VIILAVKPHIVPVALNDIKPVFNESNLLISVAG--GVPIKNMEQA 221 (303)
Q Consensus 179 IVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaa--GV~ie~L~~~ 221 (303)
+|++|+|+..-.+++... +..|+-|+ +-. +.+.+..+++
T Consensus 86 ~V~i~tp~~~h~~~~~~a---l~~Gk~V~-~EKP~a~~~~~~~~l 126 (383)
T 3oqb_A 86 MFFDAATTQARPGLLTQA---INAGKHVY-CEKPIATNFEEALEV 126 (383)
T ss_dssp EEEECSCSSSSHHHHHHH---HTTTCEEE-ECSCSCSSHHHHHHH
T ss_pred EEEECCCchHHHHHHHHH---HHCCCeEE-EcCCCCCCHHHHHHH
Confidence 999999976666665443 33566666 333 3455444443
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0076 Score=57.57 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=49.6
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhcH--------------HHHhh--------------CCCeEecChHHhhcCCCEEEE
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIVS--------------KATGT--------------MGAKITFDNKEVTLNSEVIIL 182 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~~--------------e~l~e--------------~Gv~v~~d~~eav~~ADIVIL 182 (303)
++|||||| +|..|. .|...+.... +.+.+ ....+.....+.+.++|+||+
T Consensus 7 ~~kVaIvGATGyvG~-eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~~vDvvf~ 85 (359)
T 4dpl_A 7 TLKAAILGATGLVGI-EYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDIIFS 85 (359)
T ss_dssp CEEEEETTTTSTTHH-HHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGCTTCCEEEE
T ss_pred CCeEEEECCCCHHHH-HHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHhcCCCEEEE
Confidence 57899999 899999 4555433211 01111 012222212234578999999
Q ss_pred eeCCccHHHHHHhhccccCCCCEEEEecCCC
Q psy6714 183 AVKPHIVPVALNDIKPVFNESNLLISVAGGV 213 (303)
Q Consensus 183 AVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV 213 (303)
|++...-.++...+.. .|..||++.+..
T Consensus 86 a~p~~~s~~~a~~~~~---~G~~vIDlSa~~ 113 (359)
T 4dpl_A 86 PLPQGAAGPVEEQFAK---EGFPVISNSPDH 113 (359)
T ss_dssp CCCTTTHHHHHHHHHH---TTCEEEECSSTT
T ss_pred CCChHHHHHHHHHHHH---CCCEEEEcCCCc
Confidence 9999988888877643 677888887654
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0076 Score=57.57 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=49.5
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhcH--------------HHHhh--------------CCCeEecChHHhhcCCCEEEE
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIVS--------------KATGT--------------MGAKITFDNKEVTLNSEVIIL 182 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~~--------------e~l~e--------------~Gv~v~~d~~eav~~ADIVIL 182 (303)
++|||||| +|..|. .|...+.... +.+.+ ....+.....+.+.++|+||+
T Consensus 7 ~~kVaIvGATGyvG~-eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~~vDvvf~ 85 (359)
T 4dpk_A 7 TLKAAILGATGLVGI-EYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDIIFS 85 (359)
T ss_dssp CEEEEETTTTSTTHH-HHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGCTTCCEEEE
T ss_pred CCeEEEECCCCHHHH-HHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHhcCCCEEEE
Confidence 57899999 899999 4555433211 01111 012222212234578999999
Q ss_pred eeCCccHHHHHHhhccccCCCCEEEEecCCC
Q psy6714 183 AVKPHIVPVALNDIKPVFNESNLLISVAGGV 213 (303)
Q Consensus 183 AVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV 213 (303)
|++...-.++...+.. .|..||++.+..
T Consensus 86 a~p~~~s~~~a~~~~~---~G~~vIDlSa~~ 113 (359)
T 4dpk_A 86 PLPQGAAGPVEEQFAK---EGFPVISNSPDH 113 (359)
T ss_dssp CCCTTTHHHHHHHHHH---TTCEEEECSSTT
T ss_pred CCChHHHHHHHHHHHH---CCCEEEEcCCCc
Confidence 9999988888877643 577888877654
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0089 Score=56.59 Aligned_cols=77 Identities=14% Similarity=0.178 Sum_probs=48.0
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhcH-----------H----HHh-hCC-------------CeEe-cChHHhhc-CCCE
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIVS-----------K----ATG-TMG-------------AKIT-FDNKEVTL-NSEV 179 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~~-----------e----~l~-e~G-------------v~v~-~d~~eav~-~ADI 179 (303)
+|||+|+| +|.+|. .|++.+.... . .+. .++ +.+. .+..+.++ ++|+
T Consensus 8 ~~kV~IiGAtG~iG~-~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv 86 (354)
T 1ys4_A 8 KIKVGVLGATGSVGQ-RFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDI 86 (354)
T ss_dssp CEEEEEETTTSHHHH-HHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCE
T ss_pred cceEEEECcCCHHHH-HHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCE
Confidence 47999999 999999 5665532111 0 010 011 1111 24445446 8999
Q ss_pred EEEeeCCccHHHHHHhhccccCCCCEEEEecCC
Q psy6714 180 IILAVKPHIVPVALNDIKPVFNESNLLISVAGG 212 (303)
Q Consensus 180 VILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaG 212 (303)
||+|++.....+++..+.. .|..||+..+.
T Consensus 87 V~~atp~~~~~~~a~~~~~---aG~~VId~s~~ 116 (354)
T 1ys4_A 87 VFSALPSDLAKKFEPEFAK---EGKLIFSNASA 116 (354)
T ss_dssp EEECCCHHHHHHHHHHHHH---TTCEEEECCST
T ss_pred EEECCCchHHHHHHHHHHH---CCCEEEECCch
Confidence 9999998877777766543 56778877653
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.015 Score=53.87 Aligned_cols=71 Identities=10% Similarity=0.048 Sum_probs=45.9
Q ss_pred CcEEEEcCChhhHHHHHHHHh-------------------hcHHH----HhhCCC-eEecChHHhhc--CCCEEEEeeCC
Q psy6714 133 SDKQIAGTTERGPGALIASLN-------------------IVSKA----TGTMGA-KITFDNKEVTL--NSEVIILAVKP 186 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~-------------------r~~e~----l~e~Gv-~v~~d~~eav~--~ADIVILAVpP 186 (303)
.||||||+|.||. ..+..+. .+.++ ..++|+ .+..|.+++++ +.|+|++|+|+
T Consensus 7 lrvgiIG~G~ig~-~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~ 85 (390)
T 4h3v_A 7 LGIGLIGYAFMGA-AHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPG 85 (390)
T ss_dssp EEEEEECHHHHHH-HHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCG
T ss_pred CcEEEEcCCHHHH-HHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCCh
Confidence 4799999999997 3322211 12222 235676 56788888885 47999999997
Q ss_pred ccHHHHHHhhccccCCCCEEE
Q psy6714 187 HIVPVALNDIKPVFNESNLLI 207 (303)
Q Consensus 187 ~~v~~VL~eI~~~L~~g~IVV 207 (303)
..=.+++.... ..|+-|+
T Consensus 86 ~~H~~~~~~al---~aGkhVl 103 (390)
T 4h3v_A 86 DSHAEIAIAAL---EAGKHVL 103 (390)
T ss_dssp GGHHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHHHH---HcCCCce
Confidence 76666654433 2455555
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.022 Score=53.48 Aligned_cols=82 Identities=18% Similarity=0.236 Sum_probs=48.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHh-----------hcHHH-------Hhh------CCCeEe-cChHHhhcCCCEEEEeeC-
Q psy6714 132 RSDKQIAGTTERGPGALIASLN-----------IVSKA-------TGT------MGAKIT-FDNKEVTLNSEVIILAVK- 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~-----------r~~e~-------l~e------~Gv~v~-~d~~eav~~ADIVILAVp- 185 (303)
+|||+|||+|.||. .++..+. ...++ +.. ....+. ++..+++++||+||++..
T Consensus 5 ~~kI~iiGaG~vG~-~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~ 83 (321)
T 3p7m_A 5 RKKITLVGAGNIGG-TLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGV 83 (321)
T ss_dssp CCEEEEECCSHHHH-HHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHH-HHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCc
Confidence 58999999999999 4554321 11111 111 133333 344578999999999973
Q ss_pred C---------------ccHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 P---------------HIVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 P---------------~~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
| ..+.++++.+..+- ++.+||-..++++.
T Consensus 84 p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvd~ 127 (321)
T 3p7m_A 84 PRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNPLDI 127 (321)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHH
T ss_pred CCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCchHH
Confidence 2 11334445565554 66666666676665
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.024 Score=52.72 Aligned_cols=82 Identities=15% Similarity=0.168 Sum_probs=47.6
Q ss_pred CcEEEEcCChhhHHHHHHHH------------hhcHHH-------Hh----hCC--CeE-ecChHHhhcCCCEEEEee--
Q psy6714 133 SDKQIAGTTERGPGALIASL------------NIVSKA-------TG----TMG--AKI-TFDNKEVTLNSEVIILAV-- 184 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al------------~r~~e~-------l~----e~G--v~v-~~d~~eav~~ADIVILAV-- 184 (303)
|||+|||+|++|.+ ++..+ +...++ +. -.+ ..+ ..+..+.+++||+||++-
T Consensus 1 MKV~IiGaG~VG~~-~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitAG~ 79 (294)
T 2x0j_A 1 MKLGFVGAGRVGST-SAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGL 79 (294)
T ss_dssp CEEEEECCSHHHHH-HHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECCCC
T ss_pred CEEEEECcCHHHHH-HHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEecCC
Confidence 89999999999984 55432 111111 11 111 222 233345689999999987
Q ss_pred --CCccH------------HHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 185 --KPHIV------------PVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 185 --pP~~v------------~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
+|-.- .++.+++..+- ++.+|+-+.++++.-
T Consensus 80 prkpGmtR~dLl~~Na~I~~~i~~~i~~~~-p~aivlvvsNPvd~~ 124 (294)
T 2x0j_A 80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVM 124 (294)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHHH
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhcC-CceEEEEecCcchhh
Confidence 34322 23344555543 566777788888763
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.02 Score=52.83 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=57.2
Q ss_pred CCcEEEEcC-ChhhHHHHHHHHhhcH-H--------H--HhhCCCeEecChHHhhc--CCCEEEEeeCCccHHHHHHhhc
Q psy6714 132 RSDKQIAGT-TERGPGALIASLNIVS-K--------A--TGTMGAKITFDNKEVTL--NSEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 132 ~mkIgIIGl-G~MG~~~La~al~r~~-e--------~--l~e~Gv~v~~d~~eav~--~ADIVILAVpP~~v~~VL~eI~ 197 (303)
.+||+|+|. |.||. .++..+.... + . -.-.|+.+..+..++.+ .+|++|+++||..+.+++++..
T Consensus 7 ~~~VaVvGasG~~G~-~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~~~~~~~~ea~ 85 (288)
T 1oi7_A 7 ETRVLVQGITGREGQ-FHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALEAA 85 (288)
T ss_dssp TCEEEEETTTSHHHH-HHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHH-HHHHHHHHcCCeEEEEECCCCCCceECCEEeeCCHHHHhhcCCCCEEEEecCHHHHHHHHHHHH
Confidence 578999997 99998 5554432210 0 0 01247777788888888 8999999999999999998875
Q ss_pred cccCCCCEEEEecCCCcHH
Q psy6714 198 PVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV~ie 216 (303)
.. .- +.+|-+..|++.+
T Consensus 86 ~~-Gi-~~vVi~t~G~~~~ 102 (288)
T 1oi7_A 86 HA-GI-PLIVLITEGIPTL 102 (288)
T ss_dssp HT-TC-SEEEECCSCCCHH
T ss_pred HC-CC-CEEEEECCCCCHH
Confidence 42 12 3344466788764
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.011 Score=55.13 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=45.9
Q ss_pred CCcEEEEcCChhhHHHHHHHH-h------------hc-----HHHHhhCCCeEe-cChHHhhc-----CCCEEEEeeCCc
Q psy6714 132 RSDKQIAGTTERGPGALIASL-N------------IV-----SKATGTMGAKIT-FDNKEVTL-----NSEVIILAVKPH 187 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-~------------r~-----~e~l~e~Gv~v~-~d~~eav~-----~ADIVILAVpP~ 187 (303)
++||||||+|.||. .++..+ + +. .+..+++|+... .+.+++++ +.|+||+|+++.
T Consensus 4 ~irVaIIG~G~iG~-~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~~ 82 (312)
T 1nvm_B 4 KLKVAIIGSGNIGT-DLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSAS 82 (312)
T ss_dssp CEEEEEECCSHHHH-HHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHH
T ss_pred CCEEEEEcCcHHHH-HHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCChH
Confidence 57899999999999 444433 2 11 112236677643 34455543 579999999976
Q ss_pred cHHHHHHhhccccCCCCEEEE
Q psy6714 188 IVPVALNDIKPVFNESNLLIS 208 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVVS 208 (303)
.-.+........ ++|+.||.
T Consensus 83 ~h~~~a~~al~a-~~Gk~Vi~ 102 (312)
T 1nvm_B 83 AHVQNEALLRQA-KPGIRLID 102 (312)
T ss_dssp HHHHHHHHHHHH-CTTCEEEE
T ss_pred HHHHHHHHHHHh-CCCCEEEE
Confidence 666665554321 12666664
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.026 Score=52.49 Aligned_cols=79 Identities=13% Similarity=0.113 Sum_probs=48.1
Q ss_pred cEEEEcCChhhHHHHHHHH--h---------hcHHH-------Hh------hCCCeE--ecChHHhhcCCCEEEEeeCCc
Q psy6714 134 DKQIAGTTERGPGALIASL--N---------IVSKA-------TG------TMGAKI--TFDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 134 kIgIIGlG~MG~~~La~al--~---------r~~e~-------l~------e~Gv~v--~~d~~eav~~ADIVILAVpP~ 187 (303)
||+|||.|.||.+ ++..+ + ...++ +. .....+ +.+. +++++||+||++....
T Consensus 1 KI~IiGaG~vG~~-~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~ 78 (308)
T 2d4a_B 1 MITILGAGKVGMA-TAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIG 78 (308)
T ss_dssp CEEEECCSHHHHH-HHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred CEEEECcCHHHHH-HHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCC
Confidence 7999999999995 44321 1 01111 11 113333 3454 6799999999997533
Q ss_pred c----------------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 188 I----------------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 188 ~----------------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
. +.++++++..+. ++.+||-..++++.
T Consensus 79 ~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv~~ 121 (308)
T 2d4a_B 79 RKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTNPVDA 121 (308)
T ss_dssp CCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHH
Confidence 2 667777777654 56555556676654
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.014 Score=52.87 Aligned_cols=76 Identities=14% Similarity=0.144 Sum_probs=47.9
Q ss_pred CcEEEEcC-ChhhHHHHHHHHhhcHHHHhhCCCeEe------cChHHhhc-CCCEEEEeeCCccHHHHHHhhccccCCCC
Q psy6714 133 SDKQIAGT-TERGPGALIASLNIVSKATGTMGAKIT------FDNKEVTL-NSEVIILAVKPHIVPVALNDIKPVFNESN 204 (303)
Q Consensus 133 mkIgIIGl-G~MG~~~La~al~r~~e~l~e~Gv~v~------~d~~eav~-~ADIVILAVpP~~v~~VL~eI~~~L~~g~ 204 (303)
|||+|+|+ |.||. .++..+... .++.+. .+..+++. .+|+||=++.|..+.+.+..... .+.
T Consensus 1 mkV~V~Ga~G~mG~-~i~~~~~~~------~~~elva~~d~~~dl~~~~~~~~DvvIDfT~p~a~~~~~~~a~~---~g~ 70 (245)
T 1p9l_A 1 MRVGVLGAKGKVGT-TMVRAVAAA------DDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLID---NGI 70 (245)
T ss_dssp CEEEEETTTSHHHH-HHHHHHHHC------TTCEEEEEECTTCCTHHHHHTTCCEEEECSCTTTHHHHHHHHHH---TTC
T ss_pred CEEEEECCCCHHHH-HHHHHHHhC------CCCEEEEEEccCCCHHHHhccCCcEEEEccChHHHHHHHHHHHH---cCC
Confidence 68999995 99999 565443221 122211 34455554 79999988899998888766443 344
Q ss_pred EEEEecCCCcHHHH
Q psy6714 205 LLISVAGGVPIKNM 218 (303)
Q Consensus 205 IVVSiaaGV~ie~L 218 (303)
-+|....|.+.+.+
T Consensus 71 ~~VigTTG~~~e~~ 84 (245)
T 1p9l_A 71 HAVVGTTGFTAERF 84 (245)
T ss_dssp EEEECCCCCCHHHH
T ss_pred CEEEcCCCCCHHHH
Confidence 34444447776544
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0032 Score=56.07 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=40.8
Q ss_pred CCcEEEEcCChhhHHHHHHH--Hh-----------hcHHHHh--hCCCe--EecChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIAS--LN-----------IVSKATG--TMGAK--ITFDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a--l~-----------r~~e~l~--e~Gv~--v~~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
.++++|||+|.+|. .++.. .. .+.++.. -.|+. ...+..+++++.|+||+|+|.....+++.
T Consensus 85 ~~rV~IIGAG~~G~-~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs~~~~ei~~ 163 (215)
T 2vt3_A 85 MTDVILIGVGNLGT-AFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPAVAAQSITD 163 (215)
T ss_dssp --CEEEECCSHHHH-HHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCHHHHHHHHH
T ss_pred CCEEEEEccCHHHH-HHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCchhHHHHHH
Confidence 46899999999999 56663 11 1111111 12333 33566677766699999999877777776
Q ss_pred hhcc
Q psy6714 195 DIKP 198 (303)
Q Consensus 195 eI~~ 198 (303)
.+..
T Consensus 164 ~l~~ 167 (215)
T 2vt3_A 164 RLVA 167 (215)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.031 Score=51.60 Aligned_cols=86 Identities=8% Similarity=0.041 Sum_probs=52.1
Q ss_pred CCCcEEEEcC-ChhhHHHHHHHHhhc-----------HH--HHh-hC-CCeEecChHHhh----------cCCCEEEEee
Q psy6714 131 NRSDKQIAGT-TERGPGALIASLNIV-----------SK--ATG-TM-GAKITFDNKEVT----------LNSEVIILAV 184 (303)
Q Consensus 131 ~~mkIgIIGl-G~MG~~~La~al~r~-----------~e--~l~-e~-Gv~v~~d~~eav----------~~ADIVILAV 184 (303)
.|+||||||+ |.||. ..+..+... .+ .+. .+ +.....+.++++ .+.|+|++|+
T Consensus 2 ~mirvgiIG~gG~i~~-~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~t 80 (312)
T 3o9z_A 2 HMTRFALTGLAGYIAP-RHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIAS 80 (312)
T ss_dssp -CCEEEEECTTSSSHH-HHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECS
T ss_pred CceEEEEECCChHHHH-HHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECC
Confidence 4789999999 68998 344433221 11 121 22 456777877776 5789999999
Q ss_pred CCccHHHHHHhhccccCCCCEEEEecC--CCcHHHHHhh
Q psy6714 185 KPHIVPVALNDIKPVFNESNLLISVAG--GVPIKNMEQA 221 (303)
Q Consensus 185 pP~~v~~VL~eI~~~L~~g~IVVSiaa--GV~ie~L~~~ 221 (303)
|+..-.+++.... ..|+-|+. -. ..+.+..+++
T Consensus 81 P~~~H~~~~~~al---~aGkhVl~-EKPla~~~~ea~~l 115 (312)
T 3o9z_A 81 PNHLHYPQIRMAL---RLGANALS-EKPLVLWPEEIARL 115 (312)
T ss_dssp CGGGHHHHHHHHH---HTTCEEEE-CSSSCSCHHHHHHH
T ss_pred CchhhHHHHHHHH---HCCCeEEE-ECCCCCCHHHHHHH
Confidence 9887777765543 24555552 22 3344444443
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.032 Score=51.64 Aligned_cols=87 Identities=5% Similarity=-0.088 Sum_probs=52.2
Q ss_pred CCCcEEEEcC-ChhhHHHHHHHHhhc-----------H--HHHh-hC-CCeEecChHHhh-----------cCCCEEEEe
Q psy6714 131 NRSDKQIAGT-TERGPGALIASLNIV-----------S--KATG-TM-GAKITFDNKEVT-----------LNSEVIILA 183 (303)
Q Consensus 131 ~~mkIgIIGl-G~MG~~~La~al~r~-----------~--e~l~-e~-Gv~v~~d~~eav-----------~~ADIVILA 183 (303)
.|+||||||+ |.||. ..+..+... . ..+. .+ +.....+.++++ .+.|+|++|
T Consensus 2 ~mirvgiIG~gG~i~~-~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~ 80 (318)
T 3oa2_A 2 HMKNFALIGAAGYIAP-RHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSIC 80 (318)
T ss_dssp -CCEEEEETTTSSSHH-HHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEEC
T ss_pred CceEEEEECCCcHHHH-HHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEEC
Confidence 3789999999 68997 444433221 1 1121 22 556777887776 468999999
Q ss_pred eCCccHHHHHHhhccccCCCCEEEEec-CCCcHHHHHhh
Q psy6714 184 VKPHIVPVALNDIKPVFNESNLLISVA-GGVPIKNMEQA 221 (303)
Q Consensus 184 VpP~~v~~VL~eI~~~L~~g~IVVSia-aGV~ie~L~~~ 221 (303)
+|+..-.+++..... .|+-|+.-. -..+.+..+++
T Consensus 81 tP~~~H~~~~~~al~---aGkhVl~EKPla~~~~ea~~l 116 (318)
T 3oa2_A 81 SPNYLHYPHIAAGLR---LGCDVICEKPLVPTPEMLDQL 116 (318)
T ss_dssp SCGGGHHHHHHHHHH---TTCEEEECSSCCSCHHHHHHH
T ss_pred CCcHHHHHHHHHHHH---CCCeEEEECCCcCCHHHHHHH
Confidence 998877776655432 455555221 13445544443
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.026 Score=53.55 Aligned_cols=38 Identities=8% Similarity=0.018 Sum_probs=24.7
Q ss_pred ChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEE
Q psy6714 169 DNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLIS 208 (303)
Q Consensus 169 d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVS 208 (303)
+..++..++|+||.|++.....+..+ ..+++.|+.||+
T Consensus 74 ~~~~~~~~vDiV~eatg~~~s~~~a~--~~~l~aG~~VI~ 111 (343)
T 2yyy_A 74 TILDIIEDADIVVDGAPKKIGKQNLE--NIYKPHKVKAIL 111 (343)
T ss_dssp BGGGTGGGCSEEEECCCTTHHHHHHH--HTTTTTTCEEEE
T ss_pred chHHhccCCCEEEECCCccccHHHHH--HHHHHCCCEEEE
Confidence 44455578999999998776555554 224455665553
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0077 Score=58.62 Aligned_cols=79 Identities=14% Similarity=0.257 Sum_probs=46.4
Q ss_pred CCcEEEEcCChhhHHHHHHH---------Hhhc---HHHHhhCCCeEe-----------------------------cCh
Q psy6714 132 RSDKQIAGTTERGPGALIAS---------LNIV---SKATGTMGAKIT-----------------------------FDN 170 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~a---------l~r~---~e~l~e~Gv~v~-----------------------------~d~ 170 (303)
..||+|||+|.||..+...+ +++. .+.+.++|.... .+.
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l 269 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALV 269 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHH
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHH
Confidence 46899999999998432222 1122 234455666431 134
Q ss_pred HHhhcCCCEEEEeeC-Cc-cHHHHH-HhhccccCCCCEEEEec
Q psy6714 171 KEVTLNSEVIILAVK-PH-IVPVAL-NDIKPVFNESNLLISVA 210 (303)
Q Consensus 171 ~eav~~ADIVILAVp-P~-~v~~VL-~eI~~~L~~g~IVVSia 210 (303)
.++++++||||.|+. |. ....++ +++...++++.+||.++
T Consensus 270 ~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 270 AEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp HHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred HHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence 567889999999962 21 111111 23333466889999765
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.55 E-value=0.021 Score=56.13 Aligned_cols=64 Identities=8% Similarity=0.177 Sum_probs=45.0
Q ss_pred EecChHHhhcCCCEEEEeeCCcc------------------------------------HHHHHHhhccccCCCCEEEEe
Q psy6714 166 ITFDNKEVTLNSEVIILAVKPHI------------------------------------VPVALNDIKPVFNESNLLISV 209 (303)
Q Consensus 166 v~~d~~eav~~ADIVILAVpP~~------------------------------------v~~VL~eI~~~L~~g~IVVSi 209 (303)
.+.|..+++++||+||++++... +.++++.+..+- ++.+||-.
T Consensus 73 ~t~D~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~-P~a~ii~~ 151 (450)
T 1s6y_A 73 LTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINF 151 (450)
T ss_dssp EESCHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred EeCCHHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 34566788999999999998532 456666676644 77888888
Q ss_pred cCCCcH--HHHHhhCCCCCceEEE
Q psy6714 210 AGGVPI--KNMEQALPKNSRIIRA 231 (303)
Q Consensus 210 aaGV~i--e~L~~~l~~~~~VVr~ 231 (303)
++++++ ..+.+..|. .+++.+
T Consensus 152 tNPvdivT~a~~k~~p~-~rViG~ 174 (450)
T 1s6y_A 152 TNPAGMVTEAVLRYTKQ-EKVVGL 174 (450)
T ss_dssp SSSHHHHHHHHHHHCCC-CCEEEC
T ss_pred CCcHHHHHHHHHHhCCC-CCEEEe
Confidence 888876 445566653 466655
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.041 Score=51.68 Aligned_cols=81 Identities=17% Similarity=0.234 Sum_probs=48.6
Q ss_pred CCcEEEEcCChhhHHHHHHHH--h---------hcHHH-------Hh------hCCCeE--ecChHHhhcCCCEEEEeeC
Q psy6714 132 RSDKQIAGTTERGPGALIASL--N---------IVSKA-------TG------TMGAKI--TFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al--~---------r~~e~-------l~------e~Gv~v--~~d~~eav~~ADIVILAVp 185 (303)
+|||+|||+|.||.+ ++..+ + ...++ +. .....+ +.+. +++++||+||++..
T Consensus 7 ~~kI~viGaG~vG~~-~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaag 84 (324)
T 3gvi_A 7 RNKIALIGSGMIGGT-LAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTAG 84 (324)
T ss_dssp CCEEEEECCSHHHHH-HHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECCS
T ss_pred CCEEEEECCCHHHHH-HHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEccC
Confidence 579999999999994 54332 1 11111 11 123333 3454 78999999999973
Q ss_pred -Cc---------------cHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 -PH---------------IVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 -P~---------------~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
|+ .+.++++.+..+- ++.+||-..+++++
T Consensus 85 ~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtNPvd~ 129 (324)
T 3gvi_A 85 VPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITNPLDA 129 (324)
T ss_dssp CCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHH
T ss_pred cCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCCCcHH
Confidence 21 1234445555544 66677767777765
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.016 Score=54.80 Aligned_cols=72 Identities=7% Similarity=0.036 Sum_probs=43.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcHHHHhhC------------------CC---eEecChHHhhcCCCEEEEeeCCcc-H
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVSKATGTM------------------GA---KITFDNKEVTLNSEVIILAVKPHI-V 189 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~e~l~e~------------------Gv---~v~~d~~eav~~ADIVILAVpP~~-v 189 (303)
++||||||+|.||.. ++..+....+.+.+. ++ .+++|..+++ +.|+|+.|++... .
T Consensus 3 ~irvgIiG~G~VG~~-~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~~~~~~~d~~~ll-~iDvVve~t~~~~~a 80 (332)
T 2ejw_A 3 ALKIALLGGGTVGSA-FYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIPQELLRAEPFDLL-EADLVVEAMGGVEAP 80 (332)
T ss_dssp EEEEEEECCSHHHHH-HHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSCGGGEESSCCCCT-TCSEEEECCCCSHHH
T ss_pred eeEEEEEcCCHHHHH-HHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccCcccccCCHHHHh-CCCEEEECCCCcHHH
Confidence 478999999999994 665544333211111 11 2345666667 8999999998663 3
Q ss_pred HHHHHhhccccCCCCEEEE
Q psy6714 190 PVALNDIKPVFNESNLLIS 208 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVS 208 (303)
.+.+... +..|+-||+
T Consensus 81 ~~~~~~A---L~aGKhVVt 96 (332)
T 2ejw_A 81 LRLVLPA---LEAGIPLIT 96 (332)
T ss_dssp HHHHHHH---HHTTCCEEE
T ss_pred HHHHHHH---HHcCCeEEE
Confidence 4444332 335565665
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.048 Score=53.91 Aligned_cols=76 Identities=9% Similarity=0.129 Sum_probs=50.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCCccH--HHHHHh
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN----------IVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKPHIV--PVALND 195 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v--~~VL~e 195 (303)
..++++|||+|.||.+ ++..++ .+.. .....|+.+ .+..++++.+|+|++++....+ .+.+..
T Consensus 246 ~GKTVgVIG~G~IGr~-vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~v-v~LeElL~~ADIVv~atgt~~lI~~e~l~~ 323 (464)
T 3n58_A 246 AGKVAVVCGYGDVGKG-SAQSLAGAGARVKVTEVDPICALQAAMDGFEV-VTLDDAASTADIVVTTTGNKDVITIDHMRK 323 (464)
T ss_dssp TTCEEEEECCSHHHHH-HHHHHHHTTCEEEEECSSHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECCSSSSSBCHHHHHH
T ss_pred cCCEEEEECcCHHHHH-HHHHHHHCCCEEEEEeCCcchhhHHHhcCcee-ccHHHHHhhCCEEEECCCCccccCHHHHhc
Confidence 4678999999999994 554432 1221 223467765 4778899999999999854333 344444
Q ss_pred hccccCCCCEEEEecCC
Q psy6714 196 IKPVFNESNLLISVAGG 212 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaG 212 (303)
++++.+||.+.-|
T Consensus 324 ----MK~GAILINvGRg 336 (464)
T 3n58_A 324 ----MKDMCIVGNIGHF 336 (464)
T ss_dssp ----SCTTEEEEECSSS
T ss_pred ----CCCCeEEEEcCCC
Confidence 4578888876533
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=95.38 E-value=0.023 Score=53.72 Aligned_cols=83 Identities=17% Similarity=0.228 Sum_probs=49.0
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH------------hhcHHH-------Hhh---C--C--CeEecChHHhhcCCCEEEEe
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL------------NIVSKA-------TGT---M--G--AKITFDNKEVTLNSEVIILA 183 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al------------~r~~e~-------l~e---~--G--v~v~~d~~eav~~ADIVILA 183 (303)
...|||+|||+|.||.+ ++..+ +...++ +.. + . +....|. +.+++||+||++
T Consensus 17 ~~~~kV~ViGaG~vG~~-~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~aDiVvi~ 94 (331)
T 4aj2_A 17 VPQNKITVVGVGAVGMA-CAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTANSKLVIIT 94 (331)
T ss_dssp CCSSEEEEECCSHHHHH-HHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTTEEEEEEC
T ss_pred CCCCEEEEECCCHHHHH-HHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCCCCEEEEc
Confidence 34789999999999984 44321 111111 111 1 1 1223444 468999999999
Q ss_pred eC-Cc---------------cHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 184 VK-PH---------------IVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 184 Vp-P~---------------~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
.- |+ .+.++.+.+..+ .++.+|+-..+++++
T Consensus 95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~vlvvtNPvdi 141 (331)
T 4aj2_A 95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLLIVSNPVDI 141 (331)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHH
T ss_pred cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecChHHH
Confidence 72 21 133445556665 466777777777765
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.011 Score=56.84 Aligned_cols=78 Identities=9% Similarity=0.056 Sum_probs=47.8
Q ss_pred CCCcEEEEc-CChhhHHHHHHHHhhc--HH-H---H---hhCC-------C--eEecChHHhhcCCCEEEEeeCCccHHH
Q psy6714 131 NRSDKQIAG-TTERGPGALIASLNIV--SK-A---T---GTMG-------A--KITFDNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 131 ~~mkIgIIG-lG~MG~~~La~al~r~--~e-~---l---~e~G-------v--~v~~d~~eav~~ADIVILAVpP~~v~~ 191 (303)
|+|||+||| +|..|. .|...+... .. . + ...| . .+..-..+.++++|+||+|++...-.+
T Consensus 1 m~~kVaIvGATG~vG~-eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s~~ 79 (366)
T 3pwk_A 1 MGYTVAVVGATGAVGA-QMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAK 79 (366)
T ss_dssp -CEEEEEETTTSHHHH-HHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHH
T ss_pred CCcEEEEECCCChHHH-HHHHHHhcCCCCcEEEEEEEccccCCCcceecCCCceEeeCCHHHhcCCCEEEECCChHhHHH
Confidence 357999999 999999 465544332 10 0 0 0111 1 121111234678999999998777777
Q ss_pred HHHhhccccCCCCEEEEecCC
Q psy6714 192 ALNDIKPVFNESNLLISVAGG 212 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSiaaG 212 (303)
....+. ..|..||+..+.
T Consensus 80 ~a~~~~---~~G~~vIDlSa~ 97 (366)
T 3pwk_A 80 YAPYAV---KAGVVVVDNTSY 97 (366)
T ss_dssp HHHHHH---HTTCEEEECSST
T ss_pred HHHHHH---HCCCEEEEcCCc
Confidence 776654 357788887764
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.018 Score=56.46 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=49.7
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCCCeEecChHHhhcCCCEEEEeeC-CccHH-HHHHh
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN----------IVSK---ATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVP-VALND 195 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~-~VL~e 195 (303)
..++++|+|+|.||. .++..++ .+.. .....|+.+ .+..++++.+|+||+|.- +..+. +.+..
T Consensus 219 ~GktV~ViG~G~IGk-~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v-~~Leeal~~ADIVi~atgt~~lI~~e~l~~ 296 (435)
T 3gvp_A 219 GGKQVVVCGYGEVGK-GCCAALKAMGSIVYVTEIDPICALQACMDGFRL-VKLNEVIRQVDIVITCTGNKNVVTREHLDR 296 (435)
T ss_dssp TTCEEEEECCSHHHH-HHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCSCSBCHHHHHH
T ss_pred cCCEEEEEeeCHHHH-HHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEe-ccHHHHHhcCCEEEECCCCcccCCHHHHHh
Confidence 357899999999999 4554432 2221 233567654 578889999999999853 33332 44444
Q ss_pred hccccCCCCEEEEecCC
Q psy6714 196 IKPVFNESNLLISVAGG 212 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaG 212 (303)
++++.+||.+.-|
T Consensus 297 ----MK~gailINvgrg 309 (435)
T 3gvp_A 297 ----MKNSCIVCNMGHS 309 (435)
T ss_dssp ----SCTTEEEEECSST
T ss_pred ----cCCCcEEEEecCC
Confidence 4577788876543
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.033 Score=52.67 Aligned_cols=147 Identities=11% Similarity=0.165 Sum_probs=78.1
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhcHH--------------HHhh----C-C---CeEecChHHhhcCCCEEEEeeCCcc
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIVSK--------------ATGT----M-G---AKITFDNKEVTLNSEVIILAVKPHI 188 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~~e--------------~l~e----~-G---v~v~~d~~eav~~ADIVILAVpP~~ 188 (303)
||||+|+| +|.+|. .+.+.+..... ++.+ + | +.+ .+..+ +.++|+||+|++...
T Consensus 4 ~~kV~IiGAtG~iG~-~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~-~~~~~-~~~vDvV~~a~g~~~ 80 (345)
T 2ozp_A 4 KKTLSIVGASGYAGG-EFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKF-VPPEK-LEPADILVLALPHGV 80 (345)
T ss_dssp CEEEEEETTTSHHHH-HHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBC-BCGGG-CCCCSEEEECCCTTH
T ss_pred CCEEEEECCCCHHHH-HHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccc-cchhH-hcCCCEEEEcCCcHH
Confidence 57999999 799999 56655322110 0110 1 1 111 22223 478999999999887
Q ss_pred HHHHHHhhccccCCCCEEEEecCCCc---HHHHHhhCCCC------CceEEEecCcH-HhhhCCcEEEEeCCCCCHHHHH
Q psy6714 189 VPVALNDIKPVFNESNLLISVAGGVP---IKNMEQALPKN------SRIIRAMPNTP-ALVRQGASVFVRGSSASDQDAQ 258 (303)
Q Consensus 189 v~~VL~eI~~~L~~g~IVVSiaaGV~---ie~L~~~l~~~------~~VVr~mPn~p-~~v~~G~til~~g~~~~~e~~e 258 (303)
-.+++..+. ..|..||+..+... .+.++++..+. ..++..+|-.. ..+... .+ +.++++......
T Consensus 81 s~~~a~~~~---~aG~~VId~Sa~~r~~~~~~y~~~y~~h~~~e~l~~~vygvpE~n~~~i~~~-~i-Ianp~C~tt~~~ 155 (345)
T 2ozp_A 81 FAREFDRYS---ALAPVLVDLSADFRLKDPELYRRYYGEHPRPDLLGRFVYAVPELYREALKGA-DW-IAGAGCNATATL 155 (345)
T ss_dssp HHHTHHHHH---TTCSEEEECSSTTSCSCHHHHHHHHCCCSSGGGTTSSEECCHHHHHHHHHTC-SE-EECCCHHHHHHH
T ss_pred HHHHHHHHH---HCCCEEEEcCccccCCChHHHHhhhccccchhhhccCcEeccccCHHHhhcC-CE-EeCCCcHHHHHH
Confidence 777776553 46777888876543 23344433310 13555655442 223332 23 334455554443
Q ss_pred -HHHHHHHhcCCcEEcCCCCchhhhhhccch
Q psy6714 259 -TVINLFKSVGTCEEVPEYLLDGITGLSGSG 288 (303)
Q Consensus 259 -~V~~Lfs~iG~~v~vdE~~~Da~tAlsGsg 288 (303)
.+..|.+..|.. .+.-.++...++||.|
T Consensus 156 ~~l~pL~~~~~i~--~~~i~v~t~~~~SGaG 184 (345)
T 2ozp_A 156 LGLYPLLKAGVLK--PTPIFVTLLISTSAGG 184 (345)
T ss_dssp HHHHHHHHTTCBC--SSCEEEEEEECSGGGC
T ss_pred HHHHHHHHhcCCC--CCeEEEEEEEEccccC
Confidence 355555554421 1133455555666554
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.044 Score=52.40 Aligned_cols=76 Identities=12% Similarity=0.122 Sum_probs=46.6
Q ss_pred CCcEEEEc-CChhhHHHHHH-HHhhcH-HH-----------------HhhCCCeEec--ChHHhhcCCCEEEEeeCCccH
Q psy6714 132 RSDKQIAG-TTERGPGALIA-SLNIVS-KA-----------------TGTMGAKITF--DNKEVTLNSEVIILAVKPHIV 189 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~-al~r~~-e~-----------------l~e~Gv~v~~--d~~eav~~ADIVILAVpP~~v 189 (303)
||||+|+| +|.+|. .|.. .+.... .. +....+.+.. +.. ..+++|+||+|++...-
T Consensus 1 m~kVaIvGAtG~vG~-~llr~ll~~~~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~~~~~~~-~~~~~DvVf~a~g~~~s 78 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGS-VLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLE-ALKALDIIVTCQGGDYT 78 (367)
T ss_dssp CCEEEEESTTSHHHH-HHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHH-HHHTCSEEEECSCHHHH
T ss_pred CcEEEEECCCCHHHH-HHHHHHHhcCCCCeEEEEEEEeCCCCCCccccCCCceEEEecCChH-HhcCCCEEEECCCchhH
Confidence 57999999 999999 5655 333221 10 1001122211 233 35789999999998777
Q ss_pred HHHHHhhccccCCC--CEEEEecCC
Q psy6714 190 PVALNDIKPVFNES--NLLISVAGG 212 (303)
Q Consensus 190 ~~VL~eI~~~L~~g--~IVVSiaaG 212 (303)
.+....+.. .| .+||+..+.
T Consensus 79 ~~~a~~~~~---~G~k~vVID~ss~ 100 (367)
T 1t4b_A 79 NEIYPKLRE---SGWQGYWIDAASS 100 (367)
T ss_dssp HHHHHHHHH---TTCCCEEEECSST
T ss_pred HHHHHHHHH---CCCCEEEEcCChh
Confidence 777766543 34 378877653
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.05 Score=50.61 Aligned_cols=82 Identities=12% Similarity=0.114 Sum_probs=49.5
Q ss_pred CcEEEEcC-ChhhHHHHHHHHhh------------cH--HH---HhhC--C--CeEe---cChHHhhcCCCEEEEeeC--
Q psy6714 133 SDKQIAGT-TERGPGALIASLNI------------VS--KA---TGTM--G--AKIT---FDNKEVTLNSEVIILAVK-- 185 (303)
Q Consensus 133 mkIgIIGl-G~MG~~~La~al~r------------~~--e~---l~e~--G--v~v~---~d~~eav~~ADIVILAVp-- 185 (303)
|||+|||. |.+|.+ ++..+-. .. .. +... . +... ++..+++++||+||++..
T Consensus 1 mKI~IiGa~G~VG~~-la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~ 79 (314)
T 1mld_A 1 AKVAVLGASGGIGQP-LSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP 79 (314)
T ss_dssp CEEEEETTTSTTHHH-HHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred CEEEEECCCChHHHH-HHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcC
Confidence 79999997 999995 5443211 11 11 1111 1 2221 356678999999999983
Q ss_pred --C------------ccHHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 186 --P------------HIVPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 186 --P------------~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
+ ..+.++++.+..+. ++.+||-..+++..-
T Consensus 80 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~sNPv~~~ 123 (314)
T 1mld_A 80 RKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISNPVNST 123 (314)
T ss_dssp CCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCCcchh
Confidence 2 23556666666654 555555577777754
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.017 Score=54.43 Aligned_cols=78 Identities=9% Similarity=0.048 Sum_probs=46.8
Q ss_pred CCCcEEEEc-CChhhHHHHHHHHhhc--HH-H---H---hhC-------CC--eEecChHHhhcCCCEEEEeeCCccHHH
Q psy6714 131 NRSDKQIAG-TTERGPGALIASLNIV--SK-A---T---GTM-------GA--KITFDNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 131 ~~mkIgIIG-lG~MG~~~La~al~r~--~e-~---l---~e~-------Gv--~v~~d~~eav~~ADIVILAVpP~~v~~ 191 (303)
.||||+|+| +|.+|. .|...+... .. . + ... |. .+..-..+..+++|+||+|++...-.+
T Consensus 2 ~~~kV~I~GAtG~iG~-~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~~~vDvVf~a~g~~~s~~ 80 (336)
T 2r00_A 2 QQFNVAIFGATGAVGE-TMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGELSAK 80 (336)
T ss_dssp CCEEEEEETTTSHHHH-HHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCGGGCSEEEECSCHHHHHH
T ss_pred CccEEEEECCCCHHHH-HHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCChHHhcCCCEEEECCCchHHHH
Confidence 368999999 999999 455543322 10 0 0 111 11 121111223468999999998777666
Q ss_pred HHHhhccccCCCCEEEEecCC
Q psy6714 192 ALNDIKPVFNESNLLISVAGG 212 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSiaaG 212 (303)
....+. ..|..||+..+.
T Consensus 81 ~a~~~~---~~G~~vId~s~~ 98 (336)
T 2r00_A 81 WAPIAA---EAGVVVIDNTSH 98 (336)
T ss_dssp HHHHHH---HTTCEEEECSST
T ss_pred HHHHHH---HcCCEEEEcCCc
Confidence 666543 356778877654
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=94.83 E-value=0.064 Score=51.43 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=47.1
Q ss_pred CCCcEEEEcCChhhHHHHHHHH-----------hhcHHH----HhhCCCeEe--cChHHhhcCCCEEEEeeCC-ccHH--
Q psy6714 131 NRSDKQIAGTTERGPGALIASL-----------NIVSKA----TGTMGAKIT--FDNKEVTLNSEVIILAVKP-HIVP-- 190 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al-----------~r~~e~----l~e~Gv~v~--~d~~eav~~ADIVILAVpP-~~v~-- 190 (303)
..++|+|||+|.||. .++..+ ++..++ ..++|+.+. .+..+++.++|+||.|++. ..+.
T Consensus 166 ~g~~VlIiGaG~iG~-~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~~~~~~~ 244 (404)
T 1gpj_A 166 HDKTVLVVGAGEMGK-TVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPHPVIHV 244 (404)
T ss_dssp TTCEEEEESCCHHHH-HHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSSCCBCH
T ss_pred cCCEEEEEChHHHHH-HHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCCCceecH
Confidence 467899999999999 444332 222222 235576542 3556777899999999973 3332
Q ss_pred HHHHh-h-ccccCCCCEEEEecCC
Q psy6714 191 VALND-I-KPVFNESNLLISVAGG 212 (303)
Q Consensus 191 ~VL~e-I-~~~L~~g~IVVSiaaG 212 (303)
+.+.. + +..-.++.++|.+..+
T Consensus 245 ~~l~~~~lk~r~~~~~v~vdia~P 268 (404)
T 1gpj_A 245 DDVREALRKRDRRSPILIIDIANP 268 (404)
T ss_dssp HHHHHHHHHCSSCCCEEEEECCSS
T ss_pred HHHHHHHHhccCCCCEEEEEccCC
Confidence 34443 2 1111234456665543
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.068 Score=52.49 Aligned_cols=73 Identities=10% Similarity=0.109 Sum_probs=45.3
Q ss_pred CcEEEEcCChhhHHHHHHHHhh---------------------cHHHHhh--CCCeEecChHHhhc--CCCEEEEeeCC-
Q psy6714 133 SDKQIAGTTERGPGALIASLNI---------------------VSKATGT--MGAKITFDNKEVTL--NSEVIILAVKP- 186 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~r---------------------~~e~l~e--~Gv~v~~d~~eav~--~ADIVILAVpP- 186 (303)
+||||||+|.||.. ++..+.. ..++... .+..++.|..++++ +.|+|+.|+++
T Consensus 11 irIgIIG~G~VG~~-~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~~~~~~~d~~ell~d~diDvVve~tp~~ 89 (444)
T 3mtj_A 11 IHVGLLGLGTVGGG-TLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAGGLPLTTNPFDVVDDPEIDIVVELIGGL 89 (444)
T ss_dssp EEEEEECCHHHHHH-HHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHTTCCEESCTHHHHTCTTCCEEEECCCSS
T ss_pred ccEEEECCCHHHHH-HHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcccCcccCCHHHHhcCCCCCEEEEcCCCc
Confidence 47999999999984 4433221 1111111 24556778888886 57999999985
Q ss_pred ccHHHHHHhhccccCCCCEEEEe
Q psy6714 187 HIVPVALNDIKPVFNESNLLISV 209 (303)
Q Consensus 187 ~~v~~VL~eI~~~L~~g~IVVSi 209 (303)
..-.+++... +..|+-||+-
T Consensus 90 ~~h~~~~~~A---L~aGKhVvte 109 (444)
T 3mtj_A 90 EPARELVMQA---IANGKHVVTA 109 (444)
T ss_dssp TTHHHHHHHH---HHTTCEEEEC
T ss_pred hHHHHHHHHH---HHcCCEEEEC
Confidence 5555554332 3356666644
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.037 Score=52.32 Aligned_cols=76 Identities=12% Similarity=0.178 Sum_probs=46.5
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhcH----------H-----HHh-hC-------------CCeEec-ChHHhhcCCCEE
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIVS----------K-----ATG-TM-------------GAKITF-DNKEVTLNSEVI 180 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~~----------e-----~l~-e~-------------Gv~v~~-d~~eav~~ADIV 180 (303)
++||+|+| +|.+|. .+...+.... . .+. .+ .+.+.. +..+ ++++|+|
T Consensus 4 ~~kV~IiGAtG~iG~-~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~vDvV 81 (350)
T 2ep5_A 4 KIKVSLLGSTGMVGQ-KMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDVDVV 81 (350)
T ss_dssp CEEEEEESCSSHHHH-HHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTCSEE
T ss_pred CcEEEEECcCCHHHH-HHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCCCEE
Confidence 57999999 899999 5665432111 0 010 01 112221 3333 4789999
Q ss_pred EEeeCCccHHHHHHhhccccCCCCEEEEecCC
Q psy6714 181 ILAVKPHIVPVALNDIKPVFNESNLLISVAGG 212 (303)
Q Consensus 181 ILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaG 212 (303)
|+|++...-.+++..+. ..|..||+..+.
T Consensus 82 f~atp~~~s~~~a~~~~---~aG~~VId~s~~ 110 (350)
T 2ep5_A 82 LSALPNELAESIELELV---KNGKIVVSNASP 110 (350)
T ss_dssp EECCCHHHHHHHHHHHH---HTTCEEEECSST
T ss_pred EECCChHHHHHHHHHHH---HCCCEEEECCcc
Confidence 99999777777766554 356678877653
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.023 Score=54.73 Aligned_cols=38 Identities=11% Similarity=0.082 Sum_probs=29.7
Q ss_pred hhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCCC
Q psy6714 173 VTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGV 213 (303)
Q Consensus 173 av~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV 213 (303)
.++++|+||+|++.....++...+.. .|..||+..+..
T Consensus 90 ~~~~~Dvvf~alp~~~s~~~~~~~~~---~G~~VIDlSa~f 127 (381)
T 3hsk_A 90 NFLECDVVFSGLDADVAGDIEKSFVE---AGLAVVSNAKNY 127 (381)
T ss_dssp TGGGCSEEEECCCHHHHHHHHHHHHH---TTCEEEECCSTT
T ss_pred hcccCCEEEECCChhHHHHHHHHHHh---CCCEEEEcCCcc
Confidence 46789999999998888888777643 577888877654
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.12 Score=48.14 Aligned_cols=89 Identities=17% Similarity=0.253 Sum_probs=60.1
Q ss_pred CCcEEEE-cC-ChhhHHHHHHHHhhc---------HHHH--hhCCCeEecChHHhhc--CCCEEEEeeCCccHHHHHHhh
Q psy6714 132 RSDKQIA-GT-TERGPGALIASLNIV---------SKAT--GTMGAKITFDNKEVTL--NSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 132 ~mkIgII-Gl-G~MG~~~La~al~r~---------~e~l--~e~Gv~v~~d~~eav~--~ADIVILAVpP~~v~~VL~eI 196 (303)
..+++|| |. |.+|. .++..+... +.+. .-.|+.+..+..|+.+ ..|+++++||+..+.++++++
T Consensus 13 ~~siaVV~Gasg~~G~-~~~~~l~~~G~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~vD~avI~vP~~~~~~~~~e~ 91 (305)
T 2fp4_A 13 KNTKVICQGFTGKQGT-FHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEA 91 (305)
T ss_dssp TTCEEEEETTTSHHHH-HHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCHHH-HHHHHHHHCCCcEEEEeCCCcCcceECCeeeechHHHhhhcCCCCEEEEecCHHHHHHHHHHH
Confidence 4568999 97 99988 454443221 1110 1247777788888888 899999999999999999887
Q ss_pred ccccCCCCEEEEecCCCcHH---HHHhhCC
Q psy6714 197 KPVFNESNLLISVAGGVPIK---NMEQALP 223 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV~ie---~L~~~l~ 223 (303)
... .- +.+|-+..|+..+ .+.+.+.
T Consensus 92 i~~-Gi-~~iv~~t~G~~~~~~~~l~~~a~ 119 (305)
T 2fp4_A 92 IDA-EV-PLVVCITEGIPQQDMVRVKHRLL 119 (305)
T ss_dssp HHT-TC-SEEEECCCCCCHHHHHHHHHHHT
T ss_pred HHC-CC-CEEEEECCCCChHHHHHHHHHHH
Confidence 542 12 3445577798765 3555443
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.072 Score=49.25 Aligned_cols=82 Identities=11% Similarity=0.158 Sum_probs=56.8
Q ss_pred CCcEEEEcC-ChhhHHHHHHHHhhcH---------HHH-h-hCCCeEecChHHhhc--CCCEEEEeeCCccHHHHHHhhc
Q psy6714 132 RSDKQIAGT-TERGPGALIASLNIVS---------KAT-G-TMGAKITFDNKEVTL--NSEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 132 ~mkIgIIGl-G~MG~~~La~al~r~~---------e~l-~-e~Gv~v~~d~~eav~--~ADIVILAVpP~~v~~VL~eI~ 197 (303)
..++.|+|. |.||. .+...+.... .+. . -.|+.+..+..++.+ ++|+++++|||..+.+++.+..
T Consensus 13 ~~~v~V~Gasg~~G~-~~~~~l~~~g~~~V~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~ii~vp~~~~~~~v~ea~ 91 (294)
T 2yv1_A 13 NTKAIVQGITGRQGS-FHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVKETDANASVIFVPAPFAKDAVFEAI 91 (294)
T ss_dssp TCCEEEETTTSHHHH-HHHHHHHHTTCCEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHH-HHHHHHHhCCCeEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCEEEEccCHHHHHHHHHHHH
Confidence 467899997 99998 4554432210 000 1 157778888888888 8999999999999999998876
Q ss_pred cccCCCCEEEEecCCCcHH
Q psy6714 198 PVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV~ie 216 (303)
.. .-+.+|-+..|++.+
T Consensus 92 ~~--Gi~~vVi~t~G~~~~ 108 (294)
T 2yv1_A 92 DA--GIELIVVITEHIPVH 108 (294)
T ss_dssp HT--TCSEEEECCSCCCHH
T ss_pred HC--CCCEEEEECCCCCHH
Confidence 42 123344467788764
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=0.13 Score=50.75 Aligned_cols=20 Identities=20% Similarity=0.054 Sum_probs=16.9
Q ss_pred eEecChHHhhcCCCEEEEee
Q psy6714 165 KITFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAV 184 (303)
..++|..+++++||+||+++
T Consensus 65 ~~t~d~~eAl~gAD~Vi~~~ 84 (477)
T 3u95_A 65 VKTESLDEAIEGADFIINTA 84 (477)
T ss_dssp EEESCHHHHHTTCSEEEECC
T ss_pred EEeCCHHHHhCCCCEEEECc
Confidence 34677889999999999987
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.13 Score=48.14 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=47.8
Q ss_pred CCcEEEEcCChhhHHHHHHHH-----------hhc--HHHH-------h------hCCCeEe-cChHHhhcCCCEEEEee
Q psy6714 132 RSDKQIAGTTERGPGALIASL-----------NIV--SKAT-------G------TMGAKIT-FDNKEVTLNSEVIILAV 184 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-----------~r~--~e~l-------~------e~Gv~v~-~d~~eav~~ADIVILAV 184 (303)
++||+|||.|.||.+ ++..+ +.. .+++ . .....+. ++..+.+++||+||++.
T Consensus 8 ~~kv~ViGaG~vG~~-ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIiaa 86 (315)
T 3tl2_A 8 RKKVSVIGAGFTGAT-TAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITA 86 (315)
T ss_dssp CCEEEEECCSHHHHH-HHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred CCEEEEECCCHHHHH-HHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEeC
Confidence 468999999999994 54331 111 1111 0 1122232 33356789999999998
Q ss_pred C-Cc---------------cHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 185 K-PH---------------IVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 185 p-P~---------------~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
. |+ .+.++.+.+..+- ++.+|+-..+++++
T Consensus 87 g~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vlvvsNPvd~ 132 (315)
T 3tl2_A 87 GIARKPGMSRDDLVATNSKIMKSITRDIAKHS-PNAIIVVLTNPVDA 132 (315)
T ss_dssp SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEECCChHHH
Confidence 2 21 2334455565543 66677767777665
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=94.17 E-value=0.027 Score=53.49 Aligned_cols=76 Identities=12% Similarity=0.113 Sum_probs=47.2
Q ss_pred CcEEEEc-CChhhHHHHHHHHhhc--HH-H---H---hhCCC---------eEecChHHhhcCCCEEEEeeCCccHHHHH
Q psy6714 133 SDKQIAG-TTERGPGALIASLNIV--SK-A---T---GTMGA---------KITFDNKEVTLNSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 133 mkIgIIG-lG~MG~~~La~al~r~--~e-~---l---~e~Gv---------~v~~d~~eav~~ADIVILAVpP~~v~~VL 193 (303)
|||+||| +|..|.. |...+... .. . + ...|- .+.....+.++++|+||+|++...-.+..
T Consensus 2 ~~VaIvGatG~vG~e-l~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s~~~a 80 (344)
T 3tz6_A 2 LSIGIVGATGQVGQV-MRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETADPSGLDIALFSAGSAMSKVQA 80 (344)
T ss_dssp EEEEEETTTSHHHHH-HHHHHHHTTCCEEEEEEEECTTTSSCEEEETTEEEEEEETTTSCCTTCSEEEECSCHHHHHHHH
T ss_pred CEEEEECCCChHHHH-HHHHHHhCCCCceEEEEEECcccCCCceeecCCceEEEeCCHHHhccCCEEEECCChHHHHHHH
Confidence 7899999 8999994 55443332 11 0 0 11121 11111123457899999999988777777
Q ss_pred HhhccccCCCCEEEEecCC
Q psy6714 194 NDIKPVFNESNLLISVAGG 212 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaG 212 (303)
..+.. .|..||+..+.
T Consensus 81 ~~~~~---~G~~vID~Sa~ 96 (344)
T 3tz6_A 81 PRFAA---AGVTVIDNSSA 96 (344)
T ss_dssp HHHHH---TTCEEEECSST
T ss_pred HHHHh---CCCEEEECCCc
Confidence 66543 57788887664
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.18 Score=46.59 Aligned_cols=82 Identities=15% Similarity=0.200 Sum_probs=55.4
Q ss_pred CCcEEEEcC-ChhhHHHHHHHHhhc-H--------HHH-h-hCCCeEecChHHhhc--C-CCEEEEeeCCccHHHHHHhh
Q psy6714 132 RSDKQIAGT-TERGPGALIASLNIV-S--------KAT-G-TMGAKITFDNKEVTL--N-SEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 132 ~mkIgIIGl-G~MG~~~La~al~r~-~--------e~l-~-e~Gv~v~~d~~eav~--~-ADIVILAVpP~~v~~VL~eI 196 (303)
..++.|+|. |.||. .+...+... . .+. . -.|+.+..+..++.+ . +|+++++|||..+.+++++.
T Consensus 13 ~~~vvV~Gasg~~G~-~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~~DvaIi~vp~~~~~~~v~ea 91 (297)
T 2yv2_A 13 ETRVLVQGITGREGS-FHAKAMLEYGTKVVAGVTPGKGGSEVHGVPVYDSVKEALAEHPEINTSIVFVPAPFAPDAVYEA 91 (297)
T ss_dssp TCEEEEETTTSHHHH-HHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHCTTCCEEEECCCGGGHHHHHHHH
T ss_pred CCEEEEECCCCCHHH-HHHHHHHhCCCcEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCCEEEEecCHHHHHHHHHHH
Confidence 457888897 99998 455443221 0 000 1 147777888888876 5 99999999999999999887
Q ss_pred ccccCCCCEEEEecCCCcHH
Q psy6714 197 KPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV~ie 216 (303)
... .-+.+|-+..|++.+
T Consensus 92 ~~~--Gi~~vVi~t~G~~~~ 109 (297)
T 2yv2_A 92 VDA--GIRLVVVITEGIPVH 109 (297)
T ss_dssp HHT--TCSEEEECCCCCCHH
T ss_pred HHC--CCCEEEEECCCCCHH
Confidence 652 123344466788764
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.059 Score=50.69 Aligned_cols=41 Identities=5% Similarity=0.056 Sum_probs=24.8
Q ss_pred ChHHhhc--CCCEEEEeeCCcc-HHHHHHhhccccCCCCEEEEe
Q psy6714 169 DNKEVTL--NSEVIILAVKPHI-VPVALNDIKPVFNESNLLISV 209 (303)
Q Consensus 169 d~~eav~--~ADIVILAVpP~~-v~~VL~eI~~~L~~g~IVVSi 209 (303)
+..+++. +.|+|+.|+++.. .....+.+...+..|+-||+.
T Consensus 73 d~~e~l~~~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVta 116 (325)
T 3ing_A 73 SGPEDLMGEAADLLVDCTPASRDGVREYSLYRMAFESGMNVVTA 116 (325)
T ss_dssp CSGGGGTTSCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEEC
T ss_pred CHHHHhcCCCCCEEEECCCCccccchHHHHHHHHHHCCCeEEEc
Confidence 4455554 5899999998753 333333333345567777754
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.063 Score=51.08 Aligned_cols=75 Identities=15% Similarity=0.229 Sum_probs=45.2
Q ss_pred CCCcEEEEcCChhhHHHHHHHH----------hhcHH---HHhh-CCCeE------ecChHHhhcCCCEEEEeeC-Ccc-
Q psy6714 131 NRSDKQIAGTTERGPGALIASL----------NIVSK---ATGT-MGAKI------TFDNKEVTLNSEVIILAVK-PHI- 188 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e-~Gv~v------~~d~~eav~~ADIVILAVp-P~~- 188 (303)
..++++|||+|.||.. ++..+ ++..+ .+.+ .|..+ ..+..+++..+|+||.|+. |..
T Consensus 167 ~g~~V~ViG~G~iG~~-~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~~ 245 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYN-AARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAK 245 (377)
T ss_dssp CCCEEEEECCSHHHHH-HHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTSC
T ss_pred CCCEEEEECCCHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCCC
Confidence 3578999999999994 44332 12222 2333 45431 1234567788999999985 332
Q ss_pred -----HHHHHHhhccccCCCCEEEEec
Q psy6714 189 -----VPVALNDIKPVFNESNLLISVA 210 (303)
Q Consensus 189 -----v~~VL~eI~~~L~~g~IVVSia 210 (303)
..+.++ .++++.+||.+.
T Consensus 246 t~~li~~~~l~----~mk~g~~iV~va 268 (377)
T 2vhw_A 246 APKLVSNSLVA----HMKPGAVLVDIA 268 (377)
T ss_dssp CCCCBCHHHHT----TSCTTCEEEEGG
T ss_pred CcceecHHHHh----cCCCCcEEEEEe
Confidence 344443 345677788664
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.52 Score=43.56 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=34.5
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh---------------cHHHHhhCCCeEe--cChHHhh-cCCCEEEEee
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI---------------VSKATGTMGAKIT--FDNKEVT-LNSEVIILAV 184 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r---------------~~e~l~e~Gv~v~--~d~~eav-~~ADIVILAV 184 (303)
.+|||.|||+|.+|-+.++..+.+ ..+.+.+.|+.+. .+..++. .++|+||++-
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Sp 74 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGN 74 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECT
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECC
Confidence 367899999999998436544311 1234667788764 3344444 4789888863
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=93.78 E-value=0.28 Score=39.73 Aligned_cols=83 Identities=10% Similarity=-0.023 Sum_probs=47.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----------hc-HH---HHh---hCCCeEe-cC---h---HHh-hcCCCEEEEeeCC
Q psy6714 132 RSDKQIAGTTERGPGALIASLN----------IV-SK---ATG---TMGAKIT-FD---N---KEV-TLNSEVIILAVKP 186 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~----------r~-~e---~l~---e~Gv~v~-~d---~---~ea-v~~ADIVILAVpP 186 (303)
.++|.|+|.|.+|. .++..+. +. .+ .+. ..|+.+. .| . .++ ++++|+||++++.
T Consensus 3 ~~~vlI~G~G~vG~-~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~ 81 (153)
T 1id1_A 3 KDHFIVCGHSILAI-NTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN 81 (153)
T ss_dssp CSCEEEECCSHHHH-HHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred CCcEEEECCCHHHH-HHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCC
Confidence 45799999999999 5665532 21 11 222 2355532 22 1 233 6789999999988
Q ss_pred ccHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 187 HIVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 187 ~~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
+.....+..+...+.+...||..+.....
T Consensus 82 d~~n~~~~~~a~~~~~~~~ii~~~~~~~~ 110 (153)
T 1id1_A 82 DADNAFVVLSAKDMSSDVKTVLAVSDSKN 110 (153)
T ss_dssp HHHHHHHHHHHHHHTSSSCEEEECSSGGG
T ss_pred hHHHHHHHHHHHHHCCCCEEEEEECCHHH
Confidence 77665554443334333334545544444
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=93.78 E-value=0.16 Score=46.79 Aligned_cols=96 Identities=15% Similarity=0.261 Sum_probs=54.5
Q ss_pred CcEEEEc-CChhhHHHHHHHH------------hh--cHHHH-------hh-----CCCeEecChHHhhcCCCEEEEeeC
Q psy6714 133 SDKQIAG-TTERGPGALIASL------------NI--VSKAT-------GT-----MGAKITFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 133 mkIgIIG-lG~MG~~~La~al------------~r--~~e~l-------~e-----~Gv~v~~d~~eav~~ADIVILAVp 185 (303)
|||+|+| .|.+|.+ ++..+ +. ..+++ .. ..+.+..+..+++++||+||++..
T Consensus 1 mKI~IiGAaG~vG~~-l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag 79 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAA-AGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAG 79 (303)
T ss_dssp CEEEEETTTSHHHHH-HHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCC
T ss_pred CEEEEECCCChHHHH-HHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCC
Confidence 7999999 9999994 54331 12 22111 11 123443344677999999999983
Q ss_pred -Cc---------------cHHHHHHhhccccCCCCEEEEecCCCcHH--HHHhh--CCCCCceEEE
Q psy6714 186 -PH---------------IVPVALNDIKPVFNESNLLISVAGGVPIK--NMEQA--LPKNSRIIRA 231 (303)
Q Consensus 186 -P~---------------~v~~VL~eI~~~L~~g~IVVSiaaGV~ie--~L~~~--l~~~~~VVr~ 231 (303)
|. .+.++++.+..+ .++.+|+-..++++.- .+.+. ++. .+++.+
T Consensus 80 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv~SNPv~~~~~~~~~~~~~p~-~rviG~ 143 (303)
T 1o6z_A 80 IPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPVDLLNRHLYEAGDRSR-EQVIGF 143 (303)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCSSHHHHHHHHHHHSSSCG-GGEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEeCChHHHHHHHHHHHcCCCH-HHeeec
Confidence 21 234455555554 3555666566666652 33344 442 355555
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=93.75 E-value=0.1 Score=49.18 Aligned_cols=35 Identities=3% Similarity=-0.018 Sum_probs=23.7
Q ss_pred cCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCC
Q psy6714 175 LNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGG 212 (303)
Q Consensus 175 ~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaG 212 (303)
.++|+||+|++...-.+.+..+ +..|..+|.+.++
T Consensus 90 ~~vDvV~eatg~~~~~e~a~~~---l~aGak~V~iSap 124 (335)
T 1u8f_O 90 AGAEYVVESTGVFTTMEKAGAH---LQGGAKRVIISAP 124 (335)
T ss_dssp TTCCEEEECSSSCCSHHHHGGG---GGGTCSEEEESSC
T ss_pred CCCCEEEECCCchhhHHHHHHH---HhCCCeEEEeccC
Confidence 4799999999988877776554 3345334445554
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.04 Score=53.09 Aligned_cols=74 Identities=12% Similarity=0.254 Sum_probs=45.4
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcH---HHHhhCCCeEec---------------------------ChH
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVS---KATGTMGAKITF---------------------------DNK 171 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~---e~l~e~Gv~v~~---------------------------d~~ 171 (303)
..+|+|||+|.||.. ++..+ ++.. +.+.++|..... +..
T Consensus 172 g~~V~ViGaG~iG~~-aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 250 (401)
T 1x13_A 172 PAKVMVIGAGVAGLA-AIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFA 250 (401)
T ss_dssp CCEEEEECCSHHHHH-HHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHH-HHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHH
Confidence 578999999999984 33221 1222 234567776432 234
Q ss_pred HhhcCCCEEEEee--C----CccH-HHHHHhhccccCCCCEEEEec
Q psy6714 172 EVTLNSEVIILAV--K----PHIV-PVALNDIKPVFNESNLLISVA 210 (303)
Q Consensus 172 eav~~ADIVILAV--p----P~~v-~~VL~eI~~~L~~g~IVVSia 210 (303)
+++..+|+||.|+ | |..+ .+.++. ++++.+||.+.
T Consensus 251 e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~----mk~g~vIVdva 292 (401)
T 1x13_A 251 AQAKEVDIIVTTALIPGKPAPKLITREMVDS----MKAGSVIVDLA 292 (401)
T ss_dssp HHHHHCSEEEECCCCTTSCCCCCBCHHHHHT----SCTTCEEEETT
T ss_pred HHhCCCCEEEECCccCCCCCCeeeCHHHHhc----CCCCcEEEEEc
Confidence 6677899999994 3 1222 445544 44677888664
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.16 Score=47.33 Aligned_cols=82 Identities=13% Similarity=0.163 Sum_probs=47.8
Q ss_pred CcEEEEc-CChhhHHHHHHHHh-h------------cH---HH---HhhC--CCeEe----cChHHhhcCCCEEEEeeC-
Q psy6714 133 SDKQIAG-TTERGPGALIASLN-I------------VS---KA---TGTM--GAKIT----FDNKEVTLNSEVIILAVK- 185 (303)
Q Consensus 133 mkIgIIG-lG~MG~~~La~al~-r------------~~---e~---l~e~--Gv~v~----~d~~eav~~ADIVILAVp- 185 (303)
|||+||| +|.+|.. ++..+. . .. .. +... ...+. .+..+.+++||+||++..
T Consensus 1 mKV~IiGAaG~VG~~-~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~ 79 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQA-LALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (312)
T ss_dssp CEEEEETTTSHHHHH-HHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCCHHHHH-HHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCC
Confidence 7999999 9999994 443321 1 00 01 1111 12332 255678999999999972
Q ss_pred Cc---------------cHHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 186 PH---------------IVPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 186 P~---------------~v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
|+ .+.++.+.+..+ .++.+|+-..++++.-
T Consensus 80 ~rkpG~~R~dll~~N~~I~~~i~~~i~~~-~p~a~vlvvtNPvd~~ 124 (312)
T 3hhp_A 80 ARKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACIGIITNPVNTT 124 (312)
T ss_dssp SCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEecCcchhH
Confidence 21 123334445554 3566777677777653
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=93.41 E-value=0.044 Score=51.70 Aligned_cols=77 Identities=13% Similarity=0.156 Sum_probs=44.6
Q ss_pred CCcEEEEc-CChhhHHHHHHHHh-h-cHH-HH------hhC-------CCeEe-cC-hHHhhcCCCEEEEeeCCccHHHH
Q psy6714 132 RSDKQIAG-TTERGPGALIASLN-I-VSK-AT------GTM-------GAKIT-FD-NKEVTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~-r-~~e-~l------~e~-------Gv~v~-~d-~~eav~~ADIVILAVpP~~v~~V 192 (303)
+|||+|+| +|.+|. .|...+. + ... .+ ... |..+. .+ ..+.++++|+||+|++...-.+.
T Consensus 6 ~~kV~IiGAtG~iG~-~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g~~i~~~~~~~~~~~~~DvV~~a~g~~~s~~~ 84 (340)
T 2hjs_A 6 PLNVAVVGATGSVGE-ALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRAH 84 (340)
T ss_dssp CCCEEEETTTSHHHH-HHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHHHH
T ss_pred CcEEEEECCCCHHHH-HHHHHHHhCCCCcEEEEEEecCCCCCCccccCCcceEEecCCHHHhcCCCEEEEcCCcHHHHHH
Confidence 47999999 899999 4555433 1 110 00 111 11111 11 12235689999999987776666
Q ss_pred HHhhccccCCCCEEEEecCC
Q psy6714 193 LNDIKPVFNESNLLISVAGG 212 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSiaaG 212 (303)
+..+.. .|..+|.+.+.
T Consensus 85 a~~~~~---aG~kvId~Sa~ 101 (340)
T 2hjs_A 85 AERARA---AGCSVIDLSGA 101 (340)
T ss_dssp HHHHHH---TTCEEEETTCT
T ss_pred HHHHHH---CCCEEEEeCCC
Confidence 665543 45667766543
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=93.40 E-value=0.1 Score=48.61 Aligned_cols=83 Identities=16% Similarity=0.176 Sum_probs=47.4
Q ss_pred CCCcEEEEc-CChhhHHHHHHHHhh------------cHH--H---HhhCCC--eE-----ecChHHhhcCCCEEEEeeC
Q psy6714 131 NRSDKQIAG-TTERGPGALIASLNI------------VSK--A---TGTMGA--KI-----TFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 131 ~~mkIgIIG-lG~MG~~~La~al~r------------~~e--~---l~e~Gv--~v-----~~d~~eav~~ADIVILAVp 185 (303)
++|||+||| +|.+|.. ++..+.. ..+ . +..... .+ .++..+++++||+||++..
T Consensus 7 ~~mKI~ViGAaG~VG~~-la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag 85 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQP-LAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAG 85 (326)
T ss_dssp -CEEEEEETTTSTTHHH-HHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEECCCChHHHH-HHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCC
Confidence 468999999 8999994 5543211 111 1 222111 22 2245678999999999983
Q ss_pred -C---------------ccHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 -P---------------HIVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 -P---------------~~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
| ..+.++++.+..+- ++.+|+-..+++..
T Consensus 86 ~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv~SNPv~~ 130 (326)
T 1smk_A 86 VPRKPGMTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNLISNPVNS 130 (326)
T ss_dssp CCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCchHH
Confidence 2 12445555555543 45555545666665
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=93.40 E-value=0.042 Score=52.47 Aligned_cols=34 Identities=6% Similarity=0.035 Sum_probs=24.2
Q ss_pred cCCCEEEEeeCCccHHHHHHhhccccCCCC--EEEEecC
Q psy6714 175 LNSEVIILAVKPHIVPVALNDIKPVFNESN--LLISVAG 211 (303)
Q Consensus 175 ~~ADIVILAVpP~~v~~VL~eI~~~L~~g~--IVVSiaa 211 (303)
.++|+||.|++...-.+.+..+ +..|. +|||..+
T Consensus 104 ~~vDvV~eatg~~~s~e~a~~~---l~~GakkvVId~pa 139 (354)
T 3cps_A 104 SGAQIVCESTGVFTTEEKASLH---LKGGAKKVIISAPP 139 (354)
T ss_dssp HTCCEEEECSSSCCSHHHHGGG---GTTTCSEEEESSCC
T ss_pred CCCCEEEECCCchhhHHHHHHH---HHcCCcEEEEeCCC
Confidence 4799999999988777776554 33454 7776543
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.25 Score=47.72 Aligned_cols=79 Identities=19% Similarity=0.098 Sum_probs=46.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh----------cHH---HHhhCCCeE-ecCh--H----Hh-hcCCCEEEEeeCCccHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI----------VSK---ATGTMGAKI-TFDN--K----EV-TLNSEVIILAVKPHIVP 190 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r----------~~e---~l~e~Gv~v-~~d~--~----ea-v~~ADIVILAVpP~~v~ 190 (303)
.|+|.|+|+|.+|. .++..+.. +.+ .+.+.|+.+ ..|. . ++ ++++|+||++++.....
T Consensus 4 ~~~viIiG~Gr~G~-~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n 82 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQ-ITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTN 82 (413)
T ss_dssp CCSEEEECCSHHHH-HHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHH
T ss_pred CCeEEEECCCHHHH-HHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHH
Confidence 57899999999999 57765432 222 345667753 2221 1 22 57899999999866554
Q ss_pred HHHHhhccccCCCCEEEEecC
Q psy6714 191 VALNDIKPVFNESNLLISVAG 211 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSiaa 211 (303)
-.+-.+...+.++.-||.-+.
T Consensus 83 ~~i~~~ar~~~p~~~Iiara~ 103 (413)
T 3l9w_A 83 LQLTEMVKEHFPHLQIIARAR 103 (413)
T ss_dssp HHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHHHHhCCCCeEEEEEC
Confidence 443333333445533444433
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.035 Score=49.17 Aligned_cols=65 Identities=18% Similarity=0.113 Sum_probs=39.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh------------cHHHHh--hCCCeE--ecChHHhhc-CCCEEEEeeCCccHHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI------------VSKATG--TMGAKI--TFDNKEVTL-NSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r------------~~e~l~--e~Gv~v--~~d~~eav~-~ADIVILAVpP~~v~~VL~ 194 (303)
.++++|||+|.+|. .++..... +.++.. -.|+.+ ..+..++++ +.|+|++|+|.....+++.
T Consensus 80 ~~rV~IIGaG~~G~-~la~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps~~~~ei~~ 158 (211)
T 2dt5_A 80 KWGLCIVGMGRLGS-ALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPREAAQKAAD 158 (211)
T ss_dssp CEEEEEECCSHHHH-HHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCHHHHHHHHH
T ss_pred CCEEEEECccHHHH-HHHHhHhhcCCcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCchhHHHHHH
Confidence 46899999999999 56653111 111111 123332 345566664 5899999998776666665
Q ss_pred hhc
Q psy6714 195 DIK 197 (303)
Q Consensus 195 eI~ 197 (303)
.+.
T Consensus 159 ~l~ 161 (211)
T 2dt5_A 159 LLV 161 (211)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=0.032 Score=49.68 Aligned_cols=65 Identities=17% Similarity=0.192 Sum_probs=40.9
Q ss_pred CCcEEEEcCChhhHHHHHHHH-------------hhcHH-HHhh---CCCeEe--cChHHhhc--CCCEEEEeeCCccHH
Q psy6714 132 RSDKQIAGTTERGPGALIASL-------------NIVSK-ATGT---MGAKIT--FDNKEVTL--NSEVIILAVKPHIVP 190 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-------------~r~~e-~l~e---~Gv~v~--~d~~eav~--~ADIVILAVpP~~v~ 190 (303)
+.+++|+|+|++|. +|+..+ +.+.+ +... .|+.+. .+..++++ +.|++|||+|.....
T Consensus 84 ~~~V~IvGaG~lG~-aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~~aq 162 (212)
T 3keo_A 84 TTNVMLVGCGNIGR-ALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPSTEAQ 162 (212)
T ss_dssp CEEEEEECCSHHHH-HHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCGGGHH
T ss_pred CCEEEEECcCHHHH-HHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCchhHH
Confidence 45799999999999 566541 11122 2211 355543 34556665 489999999887777
Q ss_pred HHHHhhc
Q psy6714 191 VALNDIK 197 (303)
Q Consensus 191 ~VL~eI~ 197 (303)
++++.+.
T Consensus 163 ~v~d~lv 169 (212)
T 3keo_A 163 EVADILV 169 (212)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776554
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=92.95 E-value=0.23 Score=46.52 Aligned_cols=38 Identities=8% Similarity=0.154 Sum_probs=23.5
Q ss_pred ChHHhh-cCCCEEEEeeCCc----cHHHHHHhhccccCCCCEEEEe
Q psy6714 169 DNKEVT-LNSEVIILAVKPH----IVPVALNDIKPVFNESNLLISV 209 (303)
Q Consensus 169 d~~eav-~~ADIVILAVpP~----~v~~VL~eI~~~L~~g~IVVSi 209 (303)
|..+++ .+.|+|+.|+++. ...+++.. .+..|+-||+.
T Consensus 78 d~~~ll~~~iDvVv~~t~~~~~~~~~~~~~~~---AL~aGkhVvta 120 (331)
T 3c8m_A 78 SASEALARDFDIVVDATPASADGKKELAFYKE---TFENGKDVVTA 120 (331)
T ss_dssp CHHHHHHSSCSEEEECSCCCSSSHHHHHHHHH---HHHTTCEEEEC
T ss_pred CHHHHhCCCCCEEEECCCCCCccchHHHHHHH---HHHCCCeEEec
Confidence 566655 3689999999985 33333332 34467777753
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.12 Score=49.60 Aligned_cols=77 Identities=10% Similarity=0.098 Sum_probs=47.1
Q ss_pred CCCcEEEEc-CChhhHHHHHH-HHhhcH--H-------------HHhhC-C--CeEec-ChHHhhcCCCEEEEeeCCccH
Q psy6714 131 NRSDKQIAG-TTERGPGALIA-SLNIVS--K-------------ATGTM-G--AKITF-DNKEVTLNSEVIILAVKPHIV 189 (303)
Q Consensus 131 ~~mkIgIIG-lG~MG~~~La~-al~r~~--e-------------~l~e~-G--v~v~~-d~~eav~~ADIVILAVpP~~v 189 (303)
..||||||| +|..|. .|.. .+.... . .+.++ | ..+.. +..+.++++|+||+|++...-
T Consensus 3 ~~~~VaIvGATG~vG~-ellr~lL~~hp~~~~~l~~~ss~~aG~~~~~~~~~~~~v~~~~~~~~~~~vDvvf~a~~~~~s 81 (377)
T 3uw3_A 3 GSMNVGLVGWRGMVGS-VLMQRMQEEGDFDLIEPVFFSTSNAGGKAPSFAKNETTLKDATSIDDLKKCDVIITCQGGDYT 81 (377)
T ss_dssp CCCEEEEESTTSHHHH-HHHHHHHHTTGGGGSEEEEEESSCTTSBCCTTCCSCCBCEETTCHHHHHTCSEEEECSCHHHH
T ss_pred CCCEEEEECCCCHHHH-HHHHHHHhhCCCCceEEEEEechhcCCCHHHcCCCceEEEeCCChhHhcCCCEEEECCChHHH
Confidence 368999999 888898 4554 433222 1 01111 1 11211 122346789999999998887
Q ss_pred HHHHHhhccccCCC--CEEEEecC
Q psy6714 190 PVALNDIKPVFNES--NLLISVAG 211 (303)
Q Consensus 190 ~~VL~eI~~~L~~g--~IVVSiaa 211 (303)
.+++..+.. .| +.||+..+
T Consensus 82 ~~~~~~~~~---~G~k~~VID~ss 102 (377)
T 3uw3_A 82 NDVFPKLRA---AGWNGYWIDAAS 102 (377)
T ss_dssp HHHHHHHHH---TTCCSEEEECSS
T ss_pred HHHHHHHHH---CCCCEEEEeCCc
Confidence 877776543 44 37887765
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=92.83 E-value=0.092 Score=49.93 Aligned_cols=75 Identities=15% Similarity=0.270 Sum_probs=45.4
Q ss_pred CCCcEEEEcCChhhHHHHHHHH----------hhc---HHHHhhCCCeEe--cC--------------------------
Q psy6714 131 NRSDKQIAGTTERGPGALIASL----------NIV---SKATGTMGAKIT--FD-------------------------- 169 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al----------~r~---~e~l~e~Gv~v~--~d-------------------------- 169 (303)
...+++|||+|.+|.. ++..+ ++. .+.+.++|.... ..
T Consensus 171 ~g~~V~ViGaG~iG~~-aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 249 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQ-AIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 249 (384)
T ss_dssp CCCEEEEECCSHHHHH-HHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred CCCEEEEECCCHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence 3578999999999984 33322 111 233456776543 11
Q ss_pred -hHHhhcCCCEEEEee--C----CccH-HHHHHhhccccCCCCEEEEec
Q psy6714 170 -NKEVTLNSEVIILAV--K----PHIV-PVALNDIKPVFNESNLLISVA 210 (303)
Q Consensus 170 -~~eav~~ADIVILAV--p----P~~v-~~VL~eI~~~L~~g~IVVSia 210 (303)
..+.++.+|+||.|+ | |..+ .+.++. ++++.+||.+.
T Consensus 250 ~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~----mk~g~vivdva 294 (384)
T 1l7d_A 250 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTK----MKPGSVIIDLA 294 (384)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTT----SCTTCEEEETT
T ss_pred HHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhc----CCCCCEEEEEe
Confidence 446678899999998 3 1222 444443 45677777664
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=0.043 Score=52.20 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=17.0
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN 153 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~ 153 (303)
+++||||||+|.||.. ++..+.
T Consensus 3 k~i~vgIiG~G~VG~~-~~~~l~ 24 (358)
T 1ebf_A 3 KVVNVAVIGAGVVGSA-FLDQLL 24 (358)
T ss_dssp SEEEEEEECCSHHHHH-HHHHHH
T ss_pred ceEEEEEEecCHHHHH-HHHHHH
Confidence 3679999999999994 555443
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=92.62 E-value=0.13 Score=49.37 Aligned_cols=75 Identities=9% Similarity=0.058 Sum_probs=45.7
Q ss_pred CcEEEEc-CChhhHHHHHH-HHhhcH--H-------------HHhhC-C--CeEec-ChHHhhcCCCEEEEeeCCccHHH
Q psy6714 133 SDKQIAG-TTERGPGALIA-SLNIVS--K-------------ATGTM-G--AKITF-DNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 133 mkIgIIG-lG~MG~~~La~-al~r~~--e-------------~l~e~-G--v~v~~-d~~eav~~ADIVILAVpP~~v~~ 191 (303)
||||||| +|..|. .|.+ .+.... . .+.++ | ..+.. +..+.++++|+||+|++...-.+
T Consensus 1 ~~VaIvGATG~vG~-ellr~lL~~hp~~~~~l~~~ss~~aG~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s~~ 79 (370)
T 3pzr_A 1 MRVGLVGWRGMVGS-VLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYTEK 79 (370)
T ss_dssp CEEEEESCSSHHHH-HHHHHHHHTTGGGGSEEEEEESSSTTSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHHHH
T ss_pred CEEEEECCCCHHHH-HHHHHHHhcCCCCceEEEEEeccccCcCHHHhCCCceEEEecCChhHhccCCEEEECCChHHHHH
Confidence 7899999 899999 4554 433222 1 01111 1 11111 12234678999999999887777
Q ss_pred HHHhhccccCCC--CEEEEecC
Q psy6714 192 ALNDIKPVFNES--NLLISVAG 211 (303)
Q Consensus 192 VL~eI~~~L~~g--~IVVSiaa 211 (303)
.+..+.. .| +.||+..+
T Consensus 80 ~~~~~~~---~G~k~~VID~ss 98 (370)
T 3pzr_A 80 VYPALRQ---AGWKGYWIDAAS 98 (370)
T ss_dssp HHHHHHH---TTCCCEEEECSS
T ss_pred HHHHHHH---CCCCEEEEeCCc
Confidence 7766543 34 47887765
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=92.44 E-value=0.48 Score=45.95 Aligned_cols=62 Identities=10% Similarity=0.180 Sum_probs=42.7
Q ss_pred ecChHHhhcCCCEEEEeeCCc------------------------------------cHHHHHHhhccccCCCCEEEEec
Q psy6714 167 TFDNKEVTLNSEVIILAVKPH------------------------------------IVPVALNDIKPVFNESNLLISVA 210 (303)
Q Consensus 167 ~~d~~eav~~ADIVILAVpP~------------------------------------~v~~VL~eI~~~L~~g~IVVSia 210 (303)
+.|..+++++||+||++.-.. .+.++++.+..+- +.++|..+
T Consensus 64 t~d~~~al~~AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~--~A~lin~T 141 (417)
T 1up7_A 64 SDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS--NATIVNFT 141 (417)
T ss_dssp CSSHHHHHTTCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT--CCEEEECS
T ss_pred eCCHHHHhCCCCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC--CEEEEEeC
Confidence 356668899999999999431 1456667777654 77888899
Q ss_pred CCCcH--HHHHhhCCCCCceEEE
Q psy6714 211 GGVPI--KNMEQALPKNSRIIRA 231 (303)
Q Consensus 211 aGV~i--e~L~~~l~~~~~VVr~ 231 (303)
+++.+ ..+.+..|. .+++.+
T Consensus 142 NPvdi~t~a~~k~~p~-~rviG~ 163 (417)
T 1up7_A 142 NPSGHITEFVRNYLEY-EKFIGL 163 (417)
T ss_dssp SSHHHHHHHHHHTTCC-SSEEEC
T ss_pred ChHHHHHHHHHHhCCC-CCEEEe
Confidence 98876 445555553 366655
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=92.13 E-value=0.51 Score=45.33 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=32.0
Q ss_pred eEecChHHhhcCCCEEEEeeC-Cc---------------cHHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 165 KITFDNKEVTLNSEVIILAVK-PH---------------IVPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVp-P~---------------~v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
.+..+..+.+++||+||++-- |+ .+.++.+.|..+-.++.+||-+.+++++-
T Consensus 97 ~i~~~~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~ 164 (375)
T 7mdh_A 97 SIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTN 164 (375)
T ss_dssp EEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH
T ss_pred EEecCCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHH
Confidence 455566788999999999752 22 12233334554434566777677777664
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=91.88 E-value=0.071 Score=48.98 Aligned_cols=108 Identities=13% Similarity=0.048 Sum_probs=57.0
Q ss_pred CCcEEEEcCChhhHHHHHHHH-----------hhcHHHHhhC--CCeE--ecChHHhhcCCCEEEEeeCCccHHHHHHhh
Q psy6714 132 RSDKQIAGTTERGPGALIASL-----------NIVSKATGTM--GAKI--TFDNKEVTLNSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-----------~r~~e~l~e~--Gv~v--~~d~~eav~~ADIVILAVpP~~v~~VL~eI 196 (303)
.+++.|||+|.||.+ ++..+ +++.+++.++ ++.. ..+..+++.++|+||-|+|.....++-..+
T Consensus 117 ~k~vlvlGaGg~g~a-ia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~l 195 (277)
T 3don_A 117 DAYILILGAGGASKG-IANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDSVI 195 (277)
T ss_dssp GCCEEEECCSHHHHH-HHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CCSS
T ss_pred CCEEEEECCcHHHHH-HHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcCCC
Confidence 568999999999995 44332 2333333322 2222 234456678999999999754222210011
Q ss_pred -ccccCCCCEEEEec-CCCcHHHHHhhCCCCCceEEEecCcHHhhhCCc
Q psy6714 197 -KPVFNESNLLISVA-GGVPIKNMEQALPKNSRIIRAMPNTPALVRQGA 243 (303)
Q Consensus 197 -~~~L~~g~IVVSia-aGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~ 243 (303)
...++++.+|+.++ ++....-++..-..+ ++++....+.+.|+.
T Consensus 196 ~~~~l~~~~~V~D~vY~P~~T~ll~~A~~~G---~~~~~Gl~MLv~Qa~ 241 (277)
T 3don_A 196 SLNRLASHTLVSDIVYNPYKTPILIEAEQRG---NPIYNGLDMFVHQGA 241 (277)
T ss_dssp CCTTCCSSCEEEESCCSSSSCHHHHHHHHTT---CCEECTHHHHHHHHH
T ss_pred CHHHcCCCCEEEEecCCCCCCHHHHHHHHCc---CEEeCCHHHHHHHHH
Confidence 23466788888765 333333333322212 345667777776653
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=91.20 E-value=0.23 Score=46.82 Aligned_cols=32 Identities=9% Similarity=0.007 Sum_probs=22.6
Q ss_pred cCCCEEEEeeCCccHHHHHHhhccccCCCC--EEEEe
Q psy6714 175 LNSEVIILAVKPHIVPVALNDIKPVFNESN--LLISV 209 (303)
Q Consensus 175 ~~ADIVILAVpP~~v~~VL~eI~~~L~~g~--IVVSi 209 (303)
.++|+||.|++...-.+.+..+.. .|. +|||.
T Consensus 92 ~~vDvV~eaTg~~~~~e~a~~~l~---aGak~VVIs~ 125 (337)
T 3e5r_O 92 AGAEYVVESTGVFTDKEKAAAHLK---GGAKKVVISA 125 (337)
T ss_dssp HTCSEEEECSSSCCSHHHHTHHHH---TTCSEEEESS
T ss_pred cCCCEEEECCCchhhHHHHHHHHH---cCCCEEEEec
Confidence 479999999998877777655432 343 66654
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=90.56 E-value=0.59 Score=40.47 Aligned_cols=77 Identities=16% Similarity=0.072 Sum_probs=44.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh---------cHH---HHhhCCCeEe-cC---hH---Hh-hcCCCEEEEeeCCccHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI---------VSK---ATGTMGAKIT-FD---NK---EV-TLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r---------~~e---~l~e~Gv~v~-~d---~~---ea-v~~ADIVILAVpP~~v~~ 191 (303)
.++|.|+|+|.+|. .++..+.. ..+ .+. .|+.+. .| .. ++ ++++|+||++++.+...-
T Consensus 9 ~~~viI~G~G~~G~-~la~~L~~~g~v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~ 86 (234)
T 2aef_A 9 SRHVVICGWSESTL-ECLRELRGSEVFVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETI 86 (234)
T ss_dssp -CEEEEESCCHHHH-HHHHHSTTSEEEEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHHH
T ss_pred CCEEEEECCChHHH-HHHHHHHhCCeEEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHHH
Confidence 46899999999999 57766432 122 223 566532 22 11 22 678999999998775554
Q ss_pred HHHhhccccCCCCEEEEec
Q psy6714 192 ALNDIKPVFNESNLLISVA 210 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSia 210 (303)
.+..+...+.++.-||..+
T Consensus 87 ~~~~~a~~~~~~~~iia~~ 105 (234)
T 2aef_A 87 HCILGIRKIDESVRIIAEA 105 (234)
T ss_dssp HHHHHHHHHCSSSEEEEEC
T ss_pred HHHHHHHHHCCCCeEEEEE
Confidence 4433333344552344343
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=90.36 E-value=0.41 Score=43.90 Aligned_cols=107 Identities=14% Similarity=0.130 Sum_probs=56.5
Q ss_pred CCCcEEEEcCChhhHHHHHHHH-----------hhcHHHH----hhCCC---eEe--cChHHhhcCCCEEEEeeCCccHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASL-----------NIVSKAT----GTMGA---KIT--FDNKEVTLNSEVIILAVKPHIVP 190 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al-----------~r~~e~l----~e~Gv---~v~--~d~~eav~~ADIVILAVpP~~v~ 190 (303)
..+++.|||+|.||.+ ++..+ +++.+++ .+++. .+. .+..+.+.++|+||.|++.....
T Consensus 140 ~~~~vlVlGaGg~g~a-ia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~~ 218 (297)
T 2egg_A 140 DGKRILVIGAGGGARG-IYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMHP 218 (297)
T ss_dssp TTCEEEEECCSHHHHH-HHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCSS
T ss_pred CCCEEEEECcHHHHHH-HHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCCC
Confidence 3578999999999995 44332 2333332 23333 222 24456678999999999854321
Q ss_pred HH--HHhh-ccccCCCCEEEEecC-CCcHHHHHhhCCCCCceEEEecCcHHhhhCC
Q psy6714 191 VA--LNDI-KPVFNESNLLISVAG-GVPIKNMEQALPKNSRIIRAMPNTPALVRQG 242 (303)
Q Consensus 191 ~V--L~eI-~~~L~~g~IVVSiaa-GV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G 242 (303)
.+ + .+ ...++++.+|+.+.- .....-++..-..+ +.+++...+.+.++
T Consensus 219 ~~~~~-~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G---~~~v~Gl~MLv~Qa 270 (297)
T 2egg_A 219 RVEVQ-PLSLERLRPGVIVSDIIYNPLETKWLKEAKARG---ARVQNGVGMLVYQG 270 (297)
T ss_dssp CCSCC-SSCCTTCCTTCEEEECCCSSSSCHHHHHHHHTT---CEEECSHHHHHHHH
T ss_pred CCCCC-CCCHHHcCCCCEEEEcCCCCCCCHHHHHHHHCc---CEEECCHHHHHHHH
Confidence 10 0 01 134567788886643 22222222211112 24566666665553
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.30 E-value=0.16 Score=47.66 Aligned_cols=74 Identities=9% Similarity=0.099 Sum_probs=44.5
Q ss_pred CcEEEEc-CChhhHHHHHHHHh-hcHH--------HHhhC-------C--CeEec-ChHHhhcCCCEEEEeeCCccHHHH
Q psy6714 133 SDKQIAG-TTERGPGALIASLN-IVSK--------ATGTM-------G--AKITF-DNKEVTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 133 mkIgIIG-lG~MG~~~La~al~-r~~e--------~l~e~-------G--v~v~~-d~~eav~~ADIVILAVpP~~v~~V 192 (303)
|||+|+| +|.+|. .|.+.+. +..+ ..+.. | +.+.. ++.+ . ++|+||+|++...-.+.
T Consensus 1 mkVaI~GAtG~iG~-~llr~L~~~~~~~~~l~~~~s~~~~g~~l~~~g~~i~v~~~~~~~-~-~~DvV~~a~g~~~s~~~ 77 (331)
T 2yv3_A 1 MRVAVVGATGAVGR-EILKVLEARNFPLSELRLYASPRSAGVRLAFRGEEIPVEPLPEGP-L-PVDLVLASAGGGISRAK 77 (331)
T ss_dssp CCEEEETTTSHHHH-HHHHHHHHTTCCCSCCEEEECGGGSSCEEEETTEEEEEEECCSSC-C-CCSEEEECSHHHHHHHH
T ss_pred CEEEEECCCCHHHH-HHHHHHHhCCCCcEEEEEeeccccCCCEEEEcCceEEEEeCChhh-c-CCCEEEECCCccchHHH
Confidence 6899999 999999 4555432 1110 00111 1 11211 2223 3 79999999987777777
Q ss_pred HHhhccccCCCCEEEEecCC
Q psy6714 193 LNDIKPVFNESNLLISVAGG 212 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSiaaG 212 (303)
...+. ..|..||+..+.
T Consensus 78 a~~~~---~~G~~vId~s~~ 94 (331)
T 2yv3_A 78 ALVWA---EGGALVVDNSSA 94 (331)
T ss_dssp HHHHH---HTTCEEEECSSS
T ss_pred HHHHH---HCCCEEEECCCc
Confidence 66553 356778877654
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.26 E-value=0.38 Score=45.33 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=43.1
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH----------hhcHHH---Hhh-CCCeE------ecChHHhhcCCCEEEEeeCCcc-
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL----------NIVSKA---TGT-MGAKI------TFDNKEVTLNSEVIILAVKPHI- 188 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al----------~r~~e~---l~e-~Gv~v------~~d~~eav~~ADIVILAVpP~~- 188 (303)
...++++|+|.|.||.. ++..+ ++..++ +.+ .|..+ ..+..++++.+|+||.|++...
T Consensus 164 l~~~~V~ViGaG~iG~~-~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~ 242 (369)
T 2eez_A 164 VAPASVVILGGGTVGTN-AAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGA 242 (369)
T ss_dssp BCCCEEEEECCSHHHHH-HHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC----
T ss_pred CCCCEEEEECCCHHHHH-HHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCcc
Confidence 34578999999999983 44332 122222 222 55432 1233466788999999997332
Q ss_pred ------HHHHHHhhccccCCCCEEEEe
Q psy6714 189 ------VPVALNDIKPVFNESNLLISV 209 (303)
Q Consensus 189 ------v~~VL~eI~~~L~~g~IVVSi 209 (303)
..+.++ .++++.+||.+
T Consensus 243 ~~~~li~~~~l~----~mk~gg~iV~v 265 (369)
T 2eez_A 243 KAPKLVTRDMLS----LMKEGAVIVDV 265 (369)
T ss_dssp ---CCSCHHHHT----TSCTTCEEEEC
T ss_pred ccchhHHHHHHH----hhcCCCEEEEE
Confidence 233333 34566677754
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=90.09 E-value=0.4 Score=44.27 Aligned_cols=66 Identities=17% Similarity=0.259 Sum_probs=43.9
Q ss_pred cCCCcEEEEcCCh-hhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEeeC-CccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTTE-RGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG~-MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||.|. +|.+ ++.. +...|+++ + .+..+.+++|||||.+++ |..+. .++++
T Consensus 148 l~Gk~vvVvG~s~iVG~p-lA~l-------L~~~gAtVtv~~~~t~~L~~~~~~ADIVI~Avg~p~~I~------~~~vk 213 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRP-LSMM-------LLNRNYTVSVCHSKTKDIGSMTRSSKIVVVAVGRPGFLN------REMVT 213 (276)
T ss_dssp CCSCEEEEECCCTTTHHH-HHHH-------HHHTTCEEEEECTTCSCHHHHHHHSSEEEECSSCTTCBC------GGGCC
T ss_pred cCCCEEEEEcCChHHHHH-HHHH-------HHHCCCeEEEEeCCcccHHHhhccCCEEEECCCCCcccc------Hhhcc
Confidence 4467899999985 7885 3322 22335543 2 356788999999999996 43321 23467
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
+|.+||.+
T Consensus 214 ~GavVIDv 221 (276)
T 3ngx_A 214 PGSVVIDV 221 (276)
T ss_dssp TTCEEEEC
T ss_pred CCcEEEEe
Confidence 88888855
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=90.07 E-value=0.25 Score=46.65 Aligned_cols=34 Identities=9% Similarity=-0.050 Sum_probs=22.1
Q ss_pred CCCEEEEeeCCccHHHHHHhhccccCCCCEEEEec
Q psy6714 176 NSEVIILAVKPHIVPVALNDIKPVFNESNLLISVA 210 (303)
Q Consensus 176 ~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSia 210 (303)
++|+||.|++.....+....+... ...++|||..
T Consensus 92 ~vDvV~e~tg~~~s~e~a~~~l~~-GakkVVId~~ 125 (339)
T 2x5j_O 92 GVDVVLDCTGVYGSREHGEAHIAA-GAKKVLFSHP 125 (339)
T ss_dssp TCSEEEECSSSCCSHHHHHHHHHT-TCSEEEESSC
T ss_pred CCCEEEECCCccccHHHHHHHHHc-CCCEEEEecc
Confidence 799999999977777666554331 1223566543
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=89.97 E-value=0.25 Score=46.74 Aligned_cols=21 Identities=5% Similarity=0.118 Sum_probs=16.3
Q ss_pred CCCEEEEeeCCccHHHHHHhh
Q psy6714 176 NSEVIILAVKPHIVPVALNDI 196 (303)
Q Consensus 176 ~ADIVILAVpP~~v~~VL~eI 196 (303)
++|+||.|++...-.+.....
T Consensus 91 ~vDvV~e~tg~~~s~e~a~~~ 111 (339)
T 3b1j_A 91 DIDLVIESTGVFVTAEGASKH 111 (339)
T ss_dssp TCCEEEECSSSCCBHHHHHHH
T ss_pred CCCEEEECCCccccHHHHHHH
Confidence 689999999877766666554
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=89.94 E-value=0.4 Score=45.15 Aligned_cols=36 Identities=8% Similarity=0.063 Sum_probs=24.2
Q ss_pred cCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCCC
Q psy6714 175 LNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGV 213 (303)
Q Consensus 175 ~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV 213 (303)
.++|+||.|++...-.+....+. ..|..+|.+.+..
T Consensus 87 ~~vDvVf~atg~~~s~e~a~~~l---~~GakvVdlSa~~ 122 (330)
T 1gad_O 87 VGVDVVAEATGLFLTDETARKHI---TAGAKKVVMTGPS 122 (330)
T ss_dssp HTCSEEEECSSSCCSHHHHTHHH---HTTCSEEEESSCC
T ss_pred ccCCEEEECCCccccHHHHHHHH---HCCCEEEEECCCC
Confidence 47999999999877777665543 2454455555544
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=89.90 E-value=0.56 Score=43.46 Aligned_cols=65 Identities=20% Similarity=0.309 Sum_probs=43.1
Q ss_pred CCCcEEEEcCCh-hhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEeeC-CccHHHHHHhhccccCC
Q psy6714 131 NRSDKQIAGTTE-RGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFNE 202 (303)
Q Consensus 131 ~~mkIgIIGlG~-MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~~ 202 (303)
...++.|||.|. +|.+ ++.. +...|+++ + .+..+.+++|||||.+++ |..+. .+.+++
T Consensus 160 ~Gk~vvVIG~s~iVG~p-~A~l-------L~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg~p~~I~------~~~vk~ 225 (285)
T 3l07_A 160 EGAYAVVVGASNVVGKP-VSQL-------LLNAKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFIT------ADMVKE 225 (285)
T ss_dssp TTCEEEEECCCTTTHHH-HHHH-------HHHTTCEEEEECTTCSSHHHHHTTCSEEEECCCCTTCBC------GGGSCT
T ss_pred CCCEEEEECCCchhHHH-HHHH-------HHHCCCeEEEEeCCchhHHHhcccCCEEEECCCCCCCCC------HHHcCC
Confidence 457899999887 6985 4332 22334432 2 356788999999999996 33321 234678
Q ss_pred CCEEEEe
Q psy6714 203 SNLLISV 209 (303)
Q Consensus 203 g~IVVSi 209 (303)
+.+||.+
T Consensus 226 GavVIDv 232 (285)
T 3l07_A 226 GAVVIDV 232 (285)
T ss_dssp TCEEEEC
T ss_pred CcEEEEe
Confidence 8888865
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=89.79 E-value=0.24 Score=47.67 Aligned_cols=33 Identities=9% Similarity=0.182 Sum_probs=21.0
Q ss_pred CCCEEEEeeCCccHHHHHHhhccccCCCCEEEEe
Q psy6714 176 NSEVIILAVKPHIVPVALNDIKPVFNESNLLISV 209 (303)
Q Consensus 176 ~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSi 209 (303)
++|+||.|++.....+.+...... ...++|||.
T Consensus 91 gvDvV~e~TG~f~s~e~a~~hl~a-GakkVVIs~ 123 (380)
T 2d2i_A 91 DIDLVIESTGVFVTAEGASKHIQA-GAKKVLITA 123 (380)
T ss_dssp TCCEEEECSSSCCBHHHHHHHHHT-TCSEEEESS
T ss_pred CCCEEEECCCccccHHHHHHHHHc-CCcEEEEcC
Confidence 789999999877776666554321 122345554
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=89.28 E-value=0.98 Score=42.72 Aligned_cols=52 Identities=15% Similarity=0.085 Sum_probs=33.0
Q ss_pred eEecChHHhhcCCCEEEEee----CCc------------cHHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 165 KITFDNKEVTLNSEVIILAV----KPH------------IVPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAV----pP~------------~v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
.+..+..+++++|||||++- +|- .+.++.+.|..+-.++.+|+-+.++++.-
T Consensus 89 ~~~~~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~ 156 (345)
T 4h7p_A 89 VVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTN 156 (345)
T ss_dssp EEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH
T ss_pred EEcCChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchH
Confidence 35567788899999999975 232 12333444555444676666677777653
|
| >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* | Back alignment and structure |
|---|
Probab=89.00 E-value=0.4 Score=45.33 Aligned_cols=34 Identities=3% Similarity=-0.032 Sum_probs=22.3
Q ss_pred CCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCC
Q psy6714 176 NSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGG 212 (303)
Q Consensus 176 ~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaG 212 (303)
++|+||.|++...-.+....+.. .|..+|.+.+.
T Consensus 91 gvDiV~eatg~~~s~e~a~~~l~---~Gak~V~iSap 124 (337)
T 1rm4_O 91 GIDLVIEGTGVFVDRDGAGKHLQ---AGAKKVLITAP 124 (337)
T ss_dssp TCCEEEECSSSCCBHHHHHHHHH---TTCSEEEESSC
T ss_pred CCCEEEECCCchhhHHHHHHHHH---cCCEEEEECCc
Confidence 79999999997777766655432 34444444443
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=88.95 E-value=0.3 Score=46.05 Aligned_cols=32 Identities=6% Similarity=0.083 Sum_probs=22.6
Q ss_pred CCCEEEEeeCCccHHHHHHhhccccCCCC--EEEEec
Q psy6714 176 NSEVIILAVKPHIVPVALNDIKPVFNESN--LLISVA 210 (303)
Q Consensus 176 ~ADIVILAVpP~~v~~VL~eI~~~L~~g~--IVVSia 210 (303)
++|+||.|++...-.+....+.. .|. +|||..
T Consensus 88 ~vDvV~~atg~~~s~e~a~~~l~---~Gak~vVId~p 121 (334)
T 3cmc_O 88 GVDIVVESTGRFTKREDAAKHLE---AGAKKVIISAP 121 (334)
T ss_dssp TCCEEEECSSSCCBHHHHTHHHH---TTCSEEEESSC
T ss_pred ccCEEEECCCchhhHHHHHHHHH---CCCCEEEEeCC
Confidence 79999999998777777655432 343 777653
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=88.79 E-value=0.78 Score=42.43 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=43.2
Q ss_pred cCCCcEEEEcCChh-hHHHHHHHHhhcHHHHhhC--CCeE--e----cChHHhhcCCCEEEEeeCCccHHHHHHhhcccc
Q psy6714 130 WNRSDKQIAGTTER-GPGALIASLNIVSKATGTM--GAKI--T----FDNKEVTLNSEVIILAVKPHIVPVALNDIKPVF 200 (303)
Q Consensus 130 ~~~mkIgIIGlG~M-G~~~La~al~r~~e~l~e~--Gv~v--~----~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L 200 (303)
+..+++.|||.|.| |.+ ++.. +... |.++ + .+..+.+++|||||.++....+ +. .+.+
T Consensus 156 l~gk~vvVvG~s~iVG~p-~A~l-------L~~~g~~atVtv~h~~t~~L~~~~~~ADIVI~Avg~p~~---I~--~~~v 222 (281)
T 2c2x_A 156 IAGAHVVVIGRGVTVGRP-LGLL-------LTRRSENATVTLCHTGTRDLPALTRQADIVVAAVGVAHL---LT--ADMV 222 (281)
T ss_dssp CTTCEEEEECCCTTTHHH-HHHH-------HTSTTTCCEEEEECTTCSCHHHHHTTCSEEEECSCCTTC---BC--GGGS
T ss_pred CCCCEEEEECCCcHHHHH-HHHH-------HhcCCCCCEEEEEECchhHHHHHHhhCCEEEECCCCCcc---cC--HHHc
Confidence 34678999999986 885 4333 2233 4433 2 4567889999999999963322 11 2335
Q ss_pred CCCCEEEEe
Q psy6714 201 NESNLLISV 209 (303)
Q Consensus 201 ~~g~IVVSi 209 (303)
+++.+||.+
T Consensus 223 k~GavVIDV 231 (281)
T 2c2x_A 223 RPGAAVIDV 231 (281)
T ss_dssp CTTCEEEEC
T ss_pred CCCcEEEEc
Confidence 678888854
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=88.74 E-value=0.51 Score=44.99 Aligned_cols=98 Identities=10% Similarity=0.100 Sum_probs=53.1
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH----------hhcHHH----HhhCCCeEecChHHhhc-CCCEEEEeeCCccHH-HHH
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL----------NIVSKA----TGTMGAKITFDNKEVTL-NSEVIILAVKPHIVP-VAL 193 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al----------~r~~e~----l~e~Gv~v~~d~~eav~-~ADIVILAVpP~~v~-~VL 193 (303)
+..++|+|+|+|+||.. ++..+ +.+.++ ..++|.... +..++.. +|||++.|.....+. +.+
T Consensus 171 L~GktV~V~G~G~VG~~-~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a~~~~I~~~~~ 248 (364)
T 1leh_A 171 LEGLAVSVQGLGNVAKA-LCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCALGAVLNDFTI 248 (364)
T ss_dssp CTTCEEEEECCSHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSCSCCBSTTHH
T ss_pred CCcCEEEEECchHHHHH-HHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccchHHHhCHHHH
Confidence 45689999999999994 55432 122222 223476553 4445444 899999987554442 233
Q ss_pred HhhccccCCCCEEEEecCCCc-HHHHHhhCCCCCceEEEecCcH
Q psy6714 194 NDIKPVFNESNLLISVAGGVP-IKNMEQALPKNSRIIRAMPNTP 236 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaGV~-ie~L~~~l~~~~~VVr~mPn~p 236 (303)
+.+ ...+|+..+++-. .+...+.|.. .-+.+.|...
T Consensus 249 ~~l-----g~~iV~e~An~p~t~~ea~~~L~~--~Gi~~~Pd~~ 285 (364)
T 1leh_A 249 PQL-----KAKVIAGSADNQLKDPRHGKYLHE--LGIVYAPDYV 285 (364)
T ss_dssp HHC-----CCSEECCSCSCCBSSHHHHHHHHH--HTCEECCHHH
T ss_pred HhC-----CCcEEEeCCCCCcccHHHHHHHHh--CCCEEeccee
Confidence 333 3346664544432 2344444432 2245556543
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=88.65 E-value=0.59 Score=43.65 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=42.7
Q ss_pred CCCcEEEEcCCh-hhHHHHHHHHhhcHHHHhhCCCeE--ec----ChH--HhhcCCCEEEEeeC-CccHHHHHHhhcccc
Q psy6714 131 NRSDKQIAGTTE-RGPGALIASLNIVSKATGTMGAKI--TF----DNK--EVTLNSEVIILAVK-PHIVPVALNDIKPVF 200 (303)
Q Consensus 131 ~~mkIgIIGlG~-MG~~~La~al~r~~e~l~e~Gv~v--~~----d~~--eav~~ADIVILAVp-P~~v~~VL~eI~~~L 200 (303)
...++.|||.|. +|.+ ++.. +...|+++ +. +.. +.+++|||||.+++ |..+. .+++
T Consensus 164 ~Gk~vvVIG~s~iVG~p-~A~l-------L~~~gAtVtv~~~~T~~l~l~~~~~~ADIVI~Avg~p~~I~------~~~v 229 (300)
T 4a26_A 164 AGKRAVVLGRSNIVGAP-VAAL-------LMKENATVTIVHSGTSTEDMIDYLRTADIVIAAMGQPGYVK------GEWI 229 (300)
T ss_dssp TTCEEEEECCCTTTHHH-HHHH-------HHHTTCEEEEECTTSCHHHHHHHHHTCSEEEECSCCTTCBC------GGGS
T ss_pred CCCEEEEECCCchHHHH-HHHH-------HHHCCCeEEEEeCCCCCchhhhhhccCCEEEECCCCCCCCc------HHhc
Confidence 457899999887 7985 4322 22335443 32 356 78899999999997 43221 2346
Q ss_pred CCCCEEEEe
Q psy6714 201 NESNLLISV 209 (303)
Q Consensus 201 ~~g~IVVSi 209 (303)
+++.+||.+
T Consensus 230 k~GavVIDv 238 (300)
T 4a26_A 230 KEGAAVVDV 238 (300)
T ss_dssp CTTCEEEEC
T ss_pred CCCcEEEEE
Confidence 788888865
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=88.61 E-value=0.68 Score=42.90 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=43.1
Q ss_pred CCCcEEEEcCCh-hhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEeeC-CccHHHHHHhhccccCC
Q psy6714 131 NRSDKQIAGTTE-RGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFNE 202 (303)
Q Consensus 131 ~~mkIgIIGlG~-MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~~ 202 (303)
..+++.|||.|. +|.+ ++.. +...|+++ + .+..+.+++|||||.+++ |..+. .+.+++
T Consensus 159 ~Gk~vvVvGrs~iVG~p-~A~l-------L~~~gAtVtv~h~~t~~L~~~~~~ADIVI~Avg~p~~I~------~~~vk~ 224 (285)
T 3p2o_A 159 EGKDAVIIGASNIVGRP-MATM-------LLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLR------SDMVKE 224 (285)
T ss_dssp TTCEEEEECCCTTTHHH-HHHH-------HHHTTCEEEEECTTCSCHHHHHTTCSEEEECSSCTTCBC------GGGSCT
T ss_pred CCCEEEEECCCchHHHH-HHHH-------HHHCCCeEEEEeCCchhHHHHhhcCCEEEECCCCCCcCC------HHHcCC
Confidence 457899999887 5885 4322 22335443 2 356788999999999996 33321 234678
Q ss_pred CCEEEEe
Q psy6714 203 SNLLISV 209 (303)
Q Consensus 203 g~IVVSi 209 (303)
+.+||.+
T Consensus 225 GavVIDV 231 (285)
T 3p2o_A 225 GVIVVDV 231 (285)
T ss_dssp TEEEEEC
T ss_pred CeEEEEe
Confidence 8888755
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=88.52 E-value=0.58 Score=44.02 Aligned_cols=77 Identities=18% Similarity=0.142 Sum_probs=43.4
Q ss_pred cCCCcEEEEcCChh-hHHHHHHHHhh----------cH----HHHhhCC---CeE-----e--cChHHhhcCCCEEEEee
Q psy6714 130 WNRSDKQIAGTTER-GPGALIASLNI----------VS----KATGTMG---AKI-----T--FDNKEVTLNSEVIILAV 184 (303)
Q Consensus 130 ~~~mkIgIIGlG~M-G~~~La~al~r----------~~----e~l~e~G---v~v-----~--~d~~eav~~ADIVILAV 184 (303)
+...++.|||.|.| |.. ++..+.. .. ++..+++ ... + .+..+.+++|||||.||
T Consensus 175 l~gk~vvVIG~G~iVG~~-~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsAt 253 (320)
T 1edz_A 175 LYGKKCIVINRSEIVGRP-LAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGV 253 (320)
T ss_dssp TTTCEEEEECCCTTTHHH-HHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECCCcchHHH-HHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEECC
Confidence 44678999999976 884 4443211 10 0111111 111 1 45678889999999999
Q ss_pred CCccHHHHHHhhccccCCCCEEEEecC
Q psy6714 185 KPHIVPVALNDIKPVFNESNLLISVAG 211 (303)
Q Consensus 185 pP~~v~~VL~eI~~~L~~g~IVVSiaa 211 (303)
....+ ++. .+.++++.+||.+..
T Consensus 254 g~p~~--vI~--~e~vk~GavVIDVgi 276 (320)
T 1edz_A 254 PSENY--KFP--TEYIKEGAVCINFAC 276 (320)
T ss_dssp CCTTC--CBC--TTTSCTTEEEEECSS
T ss_pred CCCcc--eeC--HHHcCCCeEEEEcCC
Confidence 64321 011 223567888887643
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=88.16 E-value=0.98 Score=42.16 Aligned_cols=66 Identities=9% Similarity=0.112 Sum_probs=43.3
Q ss_pred CCCcEEEEcCCh-hhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCC
Q psy6714 131 NRSDKQIAGTTE-RGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNES 203 (303)
Q Consensus 131 ~~mkIgIIGlG~-MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g 203 (303)
...++.|||.|. +|.+ ++.. +...|.++ + .+..+.+++|||||.++....+ +. .+.++++
T Consensus 164 ~gk~vvVIG~s~iVG~p-~A~l-------L~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg~p~~---I~--~~~vk~G 230 (301)
T 1a4i_A 164 AGRHAVVVGRSKIVGAP-MHDL-------LLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEM---VK--GEWIKPG 230 (301)
T ss_dssp TTCEEEEECCCTTTHHH-HHHH-------HHHTTCEEEEECTTCSSHHHHHTTCSEEEECCCCTTC---BC--GGGSCTT
T ss_pred CCCEEEEECCCchHHHH-HHHH-------HHhCCCeEEEEECCcccHHHHhccCCEEEECCCCccc---CC--HHHcCCC
Confidence 457899999996 6985 3322 22334432 2 4567889999999999964322 11 2346688
Q ss_pred CEEEEe
Q psy6714 204 NLLISV 209 (303)
Q Consensus 204 ~IVVSi 209 (303)
.+||.+
T Consensus 231 avVIDV 236 (301)
T 1a4i_A 231 AIVIDC 236 (301)
T ss_dssp CEEEEC
T ss_pred cEEEEc
Confidence 888866
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=87.94 E-value=0.84 Score=42.32 Aligned_cols=65 Identities=18% Similarity=0.283 Sum_probs=43.1
Q ss_pred CCCcEEEEcCCh-hhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEeeC-CccHHHHHHhhccccCC
Q psy6714 131 NRSDKQIAGTTE-RGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFNE 202 (303)
Q Consensus 131 ~~mkIgIIGlG~-MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~~ 202 (303)
..+++.|||.|. +|.+ ++.. +...|+++ + .+..+.+++|||||.+++ |..+. .+.+++
T Consensus 160 ~Gk~vvVvGrs~iVG~p-lA~l-------L~~~gAtVtv~hs~T~~L~~~~~~ADIVI~Avg~p~~I~------~~~vk~ 225 (286)
T 4a5o_A 160 YGMDAVVVGASNIVGRP-MALE-------LLLGGCTVTVTHRFTRDLADHVSRADLVVVAAGKPGLVK------GEWIKE 225 (286)
T ss_dssp TTCEEEEECTTSTTHHH-HHHH-------HHHTTCEEEEECTTCSCHHHHHHTCSEEEECCCCTTCBC------GGGSCT
T ss_pred CCCEEEEECCCchhHHH-HHHH-------HHHCCCeEEEEeCCCcCHHHHhccCCEEEECCCCCCCCC------HHHcCC
Confidence 457899999876 7885 4332 22334432 2 356788999999999996 33321 234678
Q ss_pred CCEEEEe
Q psy6714 203 SNLLISV 209 (303)
Q Consensus 203 g~IVVSi 209 (303)
+.+||.+
T Consensus 226 GavVIDv 232 (286)
T 4a5o_A 226 GAIVIDV 232 (286)
T ss_dssp TCEEEEC
T ss_pred CeEEEEe
Confidence 8888865
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=87.75 E-value=0.75 Score=42.68 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=43.1
Q ss_pred CCCcEEEEcCCh-hhHHHHHHHHhhcHHHHhhCCCeE--e----cChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCC
Q psy6714 131 NRSDKQIAGTTE-RGPGALIASLNIVSKATGTMGAKI--T----FDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNES 203 (303)
Q Consensus 131 ~~mkIgIIGlG~-MG~~~La~al~r~~e~l~e~Gv~v--~----~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g 203 (303)
...++.|||.|. +|.+ ++.. +...|.++ + .+..+.+++||+||.++....+ +. .++++++
T Consensus 158 ~gk~vvVIG~s~iVG~p-~A~l-------L~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg~p~l---I~--~~~vk~G 224 (288)
T 1b0a_A 158 FGLNAVVIGASNIVGRP-MSME-------LLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGF---IP--GDWIKEG 224 (288)
T ss_dssp TTCEEEEECCCTTTHHH-HHHH-------HHTTTCEEEEECSSCSCHHHHHHHCSEEEECSCCTTC---BC--TTTSCTT
T ss_pred CCCEEEEECCChHHHHH-HHHH-------HHHCCCeEEEEeCCchhHHHHhccCCEEEECCCCcCc---CC--HHHcCCC
Confidence 457899999997 5985 3322 22345443 2 3567888999999999963322 11 2345788
Q ss_pred CEEEEe
Q psy6714 204 NLLISV 209 (303)
Q Consensus 204 ~IVVSi 209 (303)
.+||.+
T Consensus 225 avVIDV 230 (288)
T 1b0a_A 225 AIVIDV 230 (288)
T ss_dssp CEEEEC
T ss_pred cEEEEc
Confidence 888854
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=87.54 E-value=1.6 Score=40.40 Aligned_cols=49 Identities=16% Similarity=0.141 Sum_probs=30.3
Q ss_pred ecChHHhhcCCCEEEEeeC-Cc----c-----------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 167 TFDNKEVTLNSEVIILAVK-PH----I-----------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 167 ~~d~~eav~~ADIVILAVp-P~----~-----------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
..+..+++++||+||++.- +. . +.++++.+..+-+++..||-..+++..
T Consensus 74 ~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~ 138 (329)
T 1b8p_A 74 HADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANT 138 (329)
T ss_dssp ESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred ecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHH
Confidence 4566788999999999873 21 1 334555565543245566656666654
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.74 E-value=0.99 Score=44.24 Aligned_cols=75 Identities=12% Similarity=0.169 Sum_probs=42.5
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh-----------hcHHHH---h-hCCCeE-ec------ChHHhhcCCCEEEEeeCCcc
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN-----------IVSKAT---G-TMGAKI-TF------DNKEVTLNSEVIILAVKPHI 188 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~-----------r~~e~l---~-e~Gv~v-~~------d~~eav~~ADIVILAVpP~~ 188 (303)
.+++|.|||+|.+|.+ ++..+. +..+++ . ..++.. .. +..++++++|+||.|+++..
T Consensus 22 ~~k~VlIiGAGgiG~a-ia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~~ 100 (467)
T 2axq_A 22 MGKNVLLLGSGFVAQP-VIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYTF 100 (467)
T ss_dssp -CEEEEEECCSTTHHH-HHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGGG
T ss_pred CCCEEEEECChHHHHH-HHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchhh
Confidence 4678999999999994 444321 222222 2 234432 11 23456778999999998765
Q ss_pred HHHHHHhhccccCCCCEEEEe
Q psy6714 189 VPVALNDIKPVFNESNLLISV 209 (303)
Q Consensus 189 v~~VL~eI~~~L~~g~IVVSi 209 (303)
-..+.... +..+..++.+
T Consensus 101 ~~~v~~a~---l~~g~~vvd~ 118 (467)
T 2axq_A 101 HPNVVKSA---IRTKTDVVTS 118 (467)
T ss_dssp HHHHHHHH---HHHTCEEEEC
T ss_pred hHHHHHHH---HhcCCEEEEe
Confidence 44443322 2234555543
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=85.20 E-value=0.71 Score=42.22 Aligned_cols=107 Identities=16% Similarity=0.141 Sum_probs=54.4
Q ss_pred CCCcEEEEcCChhhHHHHHHHH-----------hhcHHHH----hhC---C-CeEecChHHhhcCCCEEEEeeCCccHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASL-----------NIVSKAT----GTM---G-AKITFDNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al-----------~r~~e~l----~e~---G-v~v~~d~~eav~~ADIVILAVpP~~v~~ 191 (303)
..+++.|+|+|.||.+ ++..+ +++.+++ .+. + +.+ .+..++..++|+||-|++.....+
T Consensus 125 ~~k~vlvlGaGg~g~a-ia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~-~~~~~l~~~aDiIInaTp~gm~~~ 202 (281)
T 3o8q_A 125 KGATILLIGAGGAARG-VLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKA-QAFEQLKQSYDVIINSTSASLDGE 202 (281)
T ss_dssp TTCEEEEECCSHHHHH-HHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEE-EEGGGCCSCEEEEEECSCCCC---
T ss_pred cCCEEEEECchHHHHH-HHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeE-eeHHHhcCCCCEEEEcCcCCCCCC
Confidence 3578999999999994 44332 2222222 111 1 222 234444478999999998554322
Q ss_pred HHHhh-ccccCCCCEEEEec-CCCcHHHHHhhCCCCCceEEEecCcHHhhhCC
Q psy6714 192 ALNDI-KPVFNESNLLISVA-GGVPIKNMEQALPKNSRIIRAMPNTPALVRQG 242 (303)
Q Consensus 192 VL~eI-~~~L~~g~IVVSia-aGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G 242 (303)
.. .+ ...++++.+|+.++ +.....-++..-..++. .++....+.+.|+
T Consensus 203 ~~-~l~~~~l~~~~~V~DlvY~P~~T~ll~~A~~~G~~--~~~~Gl~Mlv~Qa 252 (281)
T 3o8q_A 203 LP-AIDPVIFSSRSVCYDMMYGKGYTVFNQWARQHGCA--QAIDGLGMLVGQA 252 (281)
T ss_dssp -C-SCCGGGEEEEEEEEESCCCSSCCHHHHHHHHTTCS--EEECTHHHHHHHH
T ss_pred CC-CCCHHHhCcCCEEEEecCCCccCHHHHHHHHCCCC--EEECcHHHHHHHH
Confidence 10 11 12345667777654 23233333332221222 2556667766665
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=85.06 E-value=2 Score=42.62 Aligned_cols=77 Identities=12% Similarity=0.036 Sum_probs=45.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhc----------------HHHHhhCCCeEe-----cCh-----HHhhcCCCEEEEeeC
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIV----------------SKATGTMGAKIT-----FDN-----KEVTLNSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~----------------~e~l~e~Gv~v~-----~d~-----~eav~~ADIVILAVp 185 (303)
.+||.|||+|.||..++-+..++. .+.....|+... .++ .+++++.|+||-+.+
T Consensus 13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~~DvVIN~s~ 92 (480)
T 2ph5_A 13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFLIDVSI 92 (480)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCEEEECCCCTTTHHHHTGGGCCTTCEEEECCS
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCceeEEeccchhHHHHHHHHhcCCCEEEECCc
Confidence 478999999999995433332211 011122354332 232 234555699998888
Q ss_pred CccHHHHHHhhccccCCCCEEEEecC
Q psy6714 186 PHIVPVALNDIKPVFNESNLLISVAG 211 (303)
Q Consensus 186 P~~v~~VL~eI~~~L~~g~IVVSiaa 211 (303)
+....++++.... .|..+|+++.
T Consensus 93 ~~~~l~Im~acle---aGv~YlDTa~ 115 (480)
T 2ph5_A 93 GISSLALIILCNQ---KGALYINAAT 115 (480)
T ss_dssp SSCHHHHHHHHHH---HTCEEEESSC
T ss_pred cccCHHHHHHHHH---cCCCEEECCC
Confidence 8877777765432 4567777764
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=84.74 E-value=0.27 Score=39.72 Aligned_cols=87 Identities=17% Similarity=0.224 Sum_probs=53.6
Q ss_pred CCcEEEEcCC----hhhHHHHHHHHhhcH-H------HHh-hCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccc
Q psy6714 132 RSDKQIAGTT----ERGPGALIASLNIVS-K------ATG-TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPV 199 (303)
Q Consensus 132 ~mkIgIIGlG----~MG~~~La~al~r~~-e------~l~-e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~ 199 (303)
..+|+|||.. ..|. .+...+.... + +.. =.|..+..+..++=+ .|++++++|++.+.++++++...
T Consensus 4 p~siAVVGaS~~~~~~g~-~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~-vDlavi~~p~~~v~~~v~e~~~~ 81 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAY-LAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEG-VDTVTLYINPQNQLSEYNYILSL 81 (122)
T ss_dssp CCCEEEETCCSCTTSHHH-HHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTT-CCEEEECSCHHHHGGGHHHHHHH
T ss_pred CCEEEEEccCCCCCCHHH-HHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCC-CCEEEEEeCHHHHHHHHHHHHhc
Confidence 4569999974 4565 3333322110 0 011 135555566666556 89999999999999999887653
Q ss_pred cCCCCEEEEecCCCcHHHHHhhCC
Q psy6714 200 FNESNLLISVAGGVPIKNMEQALP 223 (303)
Q Consensus 200 L~~g~IVVSiaaGV~ie~L~~~l~ 223 (303)
.-..+ + +..|...+++.+.+.
T Consensus 82 -g~k~v-~-~~~G~~~~e~~~~a~ 102 (122)
T 3ff4_A 82 -KPKRV-I-FNPGTENEELEEILS 102 (122)
T ss_dssp -CCSEE-E-ECTTCCCHHHHHHHH
T ss_pred -CCCEE-E-ECCCCChHHHHHHHH
Confidence 23333 3 567887666666553
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=84.69 E-value=1.4 Score=43.00 Aligned_cols=65 Identities=12% Similarity=0.141 Sum_probs=40.1
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh----------hcHHH---Hh-hCCCeE-ecC------hHHh-hcCCCEEEEeeCCcc
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN----------IVSKA---TG-TMGAKI-TFD------NKEV-TLNSEVIILAVKPHI 188 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~----------r~~e~---l~-e~Gv~v-~~d------~~ea-v~~ADIVILAVpP~~ 188 (303)
..|||-|+|+|.+|. .|+..+. .+.++ +. .+++.+ ..| ..++ +++||++|.++..+.
T Consensus 2 ~~M~iiI~G~G~vG~-~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~De 80 (461)
T 4g65_A 2 NAMKIIILGAGQVGG-TLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTDE 80 (461)
T ss_dssp CCEEEEEECCSHHHH-HHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCHH
T ss_pred CcCEEEEECCCHHHH-HHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCChH
Confidence 369999999999999 6887642 22232 32 456653 222 1222 578998887777665
Q ss_pred HHHHHHhh
Q psy6714 189 VPVALNDI 196 (303)
Q Consensus 189 v~~VL~eI 196 (303)
+.=++..+
T Consensus 81 ~Nl~~~~~ 88 (461)
T 4g65_A 81 TNMAACQV 88 (461)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54443333
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=84.12 E-value=0.46 Score=45.41 Aligned_cols=63 Identities=8% Similarity=0.031 Sum_probs=36.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhc-------------HHHH-------hhC---CCeE-e------cChHHhhcC--CCE
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIV-------------SKAT-------GTM---GAKI-T------FDNKEVTLN--SEV 179 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~-------------~e~l-------~e~---Gv~v-~------~d~~eav~~--ADI 179 (303)
||||+|||+|.||. .++..+... .+++ ... .+.. . .+..+++++ +|+
T Consensus 1 M~kVlIiGaGgiG~-~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~Dv 79 (405)
T 4ina_A 1 MAKVLQIGAGGVGG-VVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQI 79 (405)
T ss_dssp -CEEEEECCSHHHH-HHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CCEEEEECCCHHHH-HHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence 57899999999998 455443211 1111 111 2322 1 123455665 899
Q ss_pred EEEeeCCccHHHHHHh
Q psy6714 180 IILAVKPHIVPVALND 195 (303)
Q Consensus 180 VILAVpP~~v~~VL~e 195 (303)
||.|+++..-..+++.
T Consensus 80 Vin~ag~~~~~~v~~a 95 (405)
T 4ina_A 80 VLNIALPYQDLTIMEA 95 (405)
T ss_dssp EEECSCGGGHHHHHHH
T ss_pred EEECCCcccChHHHHH
Confidence 9999988765566544
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=83.60 E-value=2 Score=42.62 Aligned_cols=74 Identities=12% Similarity=0.254 Sum_probs=46.9
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh----------hcHH---HHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHH-HHHh
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN----------IVSK---ATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPV-ALND 195 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~----------r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~-VL~e 195 (303)
..++++|+|.|.||. .++..+. .... .+...|+.+ .+..+++..+|+|+.+.. ...+.. .+.
T Consensus 264 ~GKtVvVtGaGgIG~-aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv-~~lee~~~~aDvVi~atG~~~vl~~e~l~- 340 (488)
T 3ond_A 264 AGKVAVVAGYGDVGK-GCAAALKQAGARVIVTEIDPICALQATMEGLQV-LTLEDVVSEADIFVTTTGNKDIIMLDHMK- 340 (488)
T ss_dssp TTCEEEEECCSHHHH-HHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCGGGTTTTCSEEEECSSCSCSBCHHHHT-
T ss_pred cCCEEEEECCCHHHH-HHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCcc-CCHHHHHHhcCEEEeCCCChhhhhHHHHH-
Confidence 357899999999999 4555432 2222 233556654 567788889999999885 333322 333
Q ss_pred hccccCCCCEEEEec
Q psy6714 196 IKPVFNESNLLISVA 210 (303)
Q Consensus 196 I~~~L~~g~IVVSia 210 (303)
.++++.+|+...
T Consensus 341 ---~mk~gaiVvNaG 352 (488)
T 3ond_A 341 ---KMKNNAIVCNIG 352 (488)
T ss_dssp ---TSCTTEEEEESS
T ss_pred ---hcCCCeEEEEcC
Confidence 345677776554
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=83.29 E-value=0.95 Score=42.58 Aligned_cols=32 Identities=6% Similarity=-0.012 Sum_probs=22.7
Q ss_pred CCCEEEEeeCCccHHHHHHhhccccCCCC--EEEEec
Q psy6714 176 NSEVIILAVKPHIVPVALNDIKPVFNESN--LLISVA 210 (303)
Q Consensus 176 ~ADIVILAVpP~~v~~VL~eI~~~L~~g~--IVVSia 210 (303)
++|+||.|++...-.+....+.. .|. +|||..
T Consensus 89 ~vDvV~~atg~~~s~e~a~~~l~---aGakkvVId~~ 122 (332)
T 1hdg_O 89 GVDFVIESTGVFRNREKAELHLQ---AGAKKVIITAP 122 (332)
T ss_dssp TCCEEEECSSSCCBHHHHTHHHH---TTCSEEEESSC
T ss_pred CCCEEEECCccchhHHHHHHHHH---cCCcEEEEeCC
Confidence 79999999998777776655432 344 777653
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=83.28 E-value=8.9 Score=36.76 Aligned_cols=53 Identities=15% Similarity=0.083 Sum_probs=33.9
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh-----------------cHHHHhhCCCeEec--ChHHhhcC-CCEEEEee
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI-----------------VSKATGTMGAKITF--DNKEVTLN-SEVIILAV 184 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r-----------------~~e~l~e~Gv~v~~--d~~eav~~-ADIVILAV 184 (303)
..+||.|||+|..|- +++..+.+ ..+.+.+.|+.+.. +..+.+.+ +|+||++.
T Consensus 8 ~~k~v~viG~G~sG~-s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~sp 80 (451)
T 3lk7_A 8 ENKKVLVLGLARSGE-AAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNP 80 (451)
T ss_dssp TTCEEEEECCTTTHH-HHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECT
T ss_pred CCCEEEEEeeCHHHH-HHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECC
Confidence 467899999999998 45544311 11245667886542 33445566 89888864
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=82.96 E-value=0.87 Score=40.97 Aligned_cols=77 Identities=10% Similarity=0.163 Sum_probs=38.1
Q ss_pred CCCcEEEEcCChhhHHHHHHHH----------hhcHHH---Hh-hC----CCeEecChHHhhc-CCCEEEEeeCCccHHH
Q psy6714 131 NRSDKQIAGTTERGPGALIASL----------NIVSKA---TG-TM----GAKITFDNKEVTL-NSEVIILAVKPHIVPV 191 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al----------~r~~e~---l~-e~----Gv~v~~d~~eav~-~ADIVILAVpP~~v~~ 191 (303)
..+++.|+|+|.||.+ ++..+ +++.++ +. ++ .+.. .+..++.+ ++|+||-|++.....+
T Consensus 118 ~~~~vlvlGaGg~g~a-~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~-~~~~~~~~~~~DivIn~t~~~~~~~ 195 (272)
T 1p77_A 118 PNQHVLILGAGGATKG-VLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQA-VSMDSIPLQTYDLVINATSAGLSGG 195 (272)
T ss_dssp TTCEEEEECCSHHHHT-THHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEE-EEGGGCCCSCCSEEEECCCC-----
T ss_pred CCCEEEEECCcHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEE-eeHHHhccCCCCEEEECCCCCCCCC
Confidence 3568999999999984 33321 233322 21 11 1222 23333334 8999999998554332
Q ss_pred HHHhhc-cccCCCCEEEEec
Q psy6714 192 ALNDIK-PVFNESNLLISVA 210 (303)
Q Consensus 192 VL~eI~-~~L~~g~IVVSia 210 (303)
+. .+. ..+.++.+|+.+.
T Consensus 196 ~~-~i~~~~l~~~~~v~D~~ 214 (272)
T 1p77_A 196 TA-SVDAEILKLGSAFYDMQ 214 (272)
T ss_dssp ---CCCHHHHHHCSCEEESC
T ss_pred CC-CCCHHHcCCCCEEEEee
Confidence 21 111 1133456667554
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=82.86 E-value=1.6 Score=40.84 Aligned_cols=51 Identities=18% Similarity=0.087 Sum_probs=30.6
Q ss_pred eEecChHHhhcCCCEEEEeeC-Cc---------------cHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 165 KITFDNKEVTLNSEVIILAVK-PH---------------IVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVp-P~---------------~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
.+..+..+.+++||+||++-- |+ .+.++++.+..+-.++..||-+.+++++
T Consensus 68 ~~~~~~~~~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~ 134 (333)
T 5mdh_A 68 IATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANT 134 (333)
T ss_dssp EEESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred EEcCCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHH
Confidence 344566778999999999861 21 1344555565544334335556677665
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=82.73 E-value=1.2 Score=40.93 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=51.6
Q ss_pred CcEEEEcC-ChhhHHHHHHHH------------hh--cHHHH-------h----hC--CCeEec-C--hHHhhcCCCEEE
Q psy6714 133 SDKQIAGT-TERGPGALIASL------------NI--VSKAT-------G----TM--GAKITF-D--NKEVTLNSEVII 181 (303)
Q Consensus 133 mkIgIIGl-G~MG~~~La~al------------~r--~~e~l-------~----e~--Gv~v~~-d--~~eav~~ADIVI 181 (303)
|||.|+|. |.+|.+ |+..+ +. ..+++ . .. .+.+.. + ..+++++||+||
T Consensus 1 mKI~V~GaaG~vG~~-l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi 79 (313)
T 1hye_A 1 MKVTIIGASGRVGSA-TALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVI 79 (313)
T ss_dssp CEEEEETTTSHHHHH-HHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEE
T ss_pred CEEEEECCCChhHHH-HHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEE
Confidence 79999998 999994 54331 11 21111 1 11 224432 2 367899999999
Q ss_pred EeeC-Cc----c-----------HHHHHHhhccccCCCCEEEEecCCCcHH--HHHhh--CCCCCceEEE
Q psy6714 182 LAVK-PH----I-----------VPVALNDIKPVFNESNLLISVAGGVPIK--NMEQA--LPKNSRIIRA 231 (303)
Q Consensus 182 LAVp-P~----~-----------v~~VL~eI~~~L~~g~IVVSiaaGV~ie--~L~~~--l~~~~~VVr~ 231 (303)
++-- |. . +.++++.+..+- +.+|+-..+++.+- .+.+. ++. .+++.+
T Consensus 80 ~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv~SNPv~~~t~~~~k~~~~p~-~rviG~ 146 (313)
T 1hye_A 80 ITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFVITNPVDVMTYKALVDSKFER-NQVFGL 146 (313)
T ss_dssp ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEECSSSHHHHHHHHHHHHCCCT-TSEEEC
T ss_pred ECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecCcHHHHHHHHHHhhCcCh-hcEEEe
Confidence 9872 21 1 123334444433 55666566777652 33343 442 355555
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=80.85 E-value=3.6 Score=38.37 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=45.1
Q ss_pred CCCcEEEEcCC-hhhHHHHHHHHhhcHHHHhhCCCeE------ecChHHhhcCCCEEEEee-CCccHHHHHHhhccccCC
Q psy6714 131 NRSDKQIAGTT-ERGPGALIASLNIVSKATGTMGAKI------TFDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFNE 202 (303)
Q Consensus 131 ~~mkIgIIGlG-~MG~~~La~al~r~~e~l~e~Gv~v------~~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~~ 202 (303)
..+++.|||-+ .+|.++..+. ...|.++ +.|..+..++|||||.++ +|..+. .+++++
T Consensus 178 ~Gk~vvViGRS~iVGkPla~LL--------~~~~ATVTi~Hs~T~dl~~~~~~ADIvV~A~G~p~~i~------~d~vk~ 243 (303)
T 4b4u_A 178 AGKHAVVVGRSAILGKPMAMML--------LQANATVTICHSRTQNLPELVKQADIIVGAVGKAELIQ------KDWIKQ 243 (303)
T ss_dssp TTCEEEEECCCTTTHHHHHHHH--------HHTTCEEEEECTTCSSHHHHHHTCSEEEECSCSTTCBC------GGGSCT
T ss_pred CCCEEEEEeccccccchHHHHH--------HhcCCEEEEecCCCCCHHHHhhcCCeEEeccCCCCccc------cccccC
Confidence 45789999955 5577633222 2234543 246678899999999999 566432 345778
Q ss_pred CCEEEEecCCCc
Q psy6714 203 SNLLISVAGGVP 214 (303)
Q Consensus 203 g~IVVSiaaGV~ 214 (303)
|.+||.+ |+.
T Consensus 244 GavVIDV--Gin 253 (303)
T 4b4u_A 244 GAVVVDA--GFH 253 (303)
T ss_dssp TCEEEEC--CCB
T ss_pred CCEEEEe--cee
Confidence 9988865 554
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=80.14 E-value=2.3 Score=38.05 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=40.9
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHHHH----hhCCC--eE-ecChHHhh-cCCCEEEEeeCCccHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSKAT----GTMGA--KI-TFDNKEVT-LNSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e~l----~e~Gv--~v-~~d~~eav-~~ADIVILAVpP~~v~~VL 193 (303)
.+++.|+|.|.||.+ ++..+ +++.+++ .+++. .+ ..+..++. ..+|+||-|++.....++
T Consensus 119 ~k~vlViGaGg~g~a-~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~~~~- 196 (271)
T 1nyt_A 119 GLRILLIGAGGASRG-VLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGDI- 196 (271)
T ss_dssp TCEEEEECCSHHHHH-HHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGTCC-
T ss_pred CCEEEEECCcHHHHH-HHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCCCCC-
Confidence 568999999999994 44332 2232222 12221 11 23333333 489999999975432211
Q ss_pred Hhhc-cccCCCCEEEEec
Q psy6714 194 NDIK-PVFNESNLLISVA 210 (303)
Q Consensus 194 ~eI~-~~L~~g~IVVSia 210 (303)
..+. ..+.++.+|+.+.
T Consensus 197 ~~i~~~~l~~~~~v~D~~ 214 (271)
T 1nyt_A 197 PAIPSSLIHPGIYCYDMF 214 (271)
T ss_dssp CCCCGGGCCTTCEEEESC
T ss_pred CCCCHHHcCCCCEEEEec
Confidence 1121 2345677777653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 303 | ||||
| d1yqga2 | 152 | c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas | 1e-12 | |
| d2ahra2 | 152 | c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas | 4e-08 | |
| d2b0ja2 | 242 | c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt | 1e-07 |
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Score = 62.3 bits (150), Expect = 1e-12
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 178 EVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPA 237
+V+ILAVKP + A +I+ L++SVA G+ + + + L RI+R MPNTP
Sbjct: 59 DVLILAVKPQDMEAACKNIR---TNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPG 115
Query: 238 LVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEV 273
+ G S + S+ D + + KSVG +
Sbjct: 116 KIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTVWL 151
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Score = 49.7 bits (117), Expect = 4e-08
Identities = 16/81 (19%), Positives = 38/81 (46%)
Query: 195 DIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASD 254
+ + +IS+A G+ ++ + + ++ ++R MPN A + Q ++ + S
Sbjct: 72 TVLKPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQ 131
Query: 255 QDAQTVINLFKSVGTCEEVPE 275
+ V +L S G+ ++ E
Sbjct: 132 ELQARVRDLTDSFGSTFDISE 152
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Score = 49.6 bits (118), Expect = 1e-07
Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 2/108 (1%)
Query: 163 GAKITFDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA 221
G K+T D++E ++++I + K + P + E ++ K +
Sbjct: 128 GLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIF 187
Query: 222 LPKNSRIIRAMPNTPALVRQGAS-VFVRGSSASDQDAQTVINLFKSVG 268
+ P V + V++ AS++ + + K
Sbjct: 188 KDLGREDLNITSYHPGCVPEMKGQVYIAEGYASEEAVNKLYEIGKIAR 235
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 303 | |||
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.93 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.91 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.71 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.64 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.61 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.48 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.4 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.35 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.32 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.29 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.23 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.15 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 99.12 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 98.91 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 98.88 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 98.87 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 98.86 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 98.84 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 98.69 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 98.14 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 98.06 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 97.86 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 97.83 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 97.71 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 97.67 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 97.52 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.48 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 97.48 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 97.42 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 97.38 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 97.37 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.37 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 97.35 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 97.31 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 97.28 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.26 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 97.26 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.2 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.19 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.18 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 97.09 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 97.02 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 96.97 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 96.96 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 96.95 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.93 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 96.89 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 96.88 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 96.87 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 96.8 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 96.76 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 96.71 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.71 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.7 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 96.64 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 96.62 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.6 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.52 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.52 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.46 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 96.42 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 96.3 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 96.2 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 96.12 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 96.08 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 96.06 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.97 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 95.89 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 95.85 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 95.85 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.84 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 95.7 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.6 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 95.51 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 95.4 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 95.37 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 95.08 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.01 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 94.99 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 94.8 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 94.68 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.51 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 93.57 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 93.24 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 93.17 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 93.03 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 92.95 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 92.14 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 92.01 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 91.88 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 91.47 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 90.47 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 89.42 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 89.24 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 89.02 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 88.56 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 88.18 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 87.6 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 87.05 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 86.93 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 86.67 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 85.8 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 84.18 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 82.51 | |
| d2nv0a1 | 195 | Hypothetical protein YaaE {Bacillus subtilis [TaxI | 82.29 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 82.27 | |
| d1k9vf_ | 200 | GAT subunit, HisH, (or domain) of imidazoleglycero | 82.21 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 81.28 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 80.22 |
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.93 E-value=5.3e-26 Score=191.26 Aligned_cols=138 Identities=18% Similarity=0.333 Sum_probs=120.8
Q ss_pred CcEEEEcCChhhHHHHHHHHh----------hcHH---HH-hhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhcc
Q psy6714 133 SDKQIAGTTERGPGALIASLN----------IVSK---AT-GTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKP 198 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~----------r~~e---~l-~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~ 198 (303)
|||||||+|+||.+ |+..+. +..+ .+ +++|+.+..++.+++++||+|||||||+++.++++++
T Consensus 1 MkIg~IG~G~mG~a-l~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavkp~~~~~vl~~l-- 77 (152)
T d2ahra2 1 MKIGIIGVGKMASA-IIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKPQLFETVLKPL-- 77 (152)
T ss_dssp CEEEEECCSHHHHH-HHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCGGGHHHHHTTS--
T ss_pred CEEEEEeccHHHHH-HHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecchHhHHHHhhhc--
Confidence 89999999999994 665431 2222 22 4568888899999999999999999999999998765
Q ss_pred ccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEcCC
Q psy6714 199 VFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVPE 275 (303)
Q Consensus 199 ~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~vdE 275 (303)
+++++|||+++|++++.|++.++.+.+++|+|||+|..+++|.+.++.+...++++++.+++||+.+|.+++++|
T Consensus 78 --~~~~~iis~~agi~~~~l~~~l~~~~~ivr~mPN~~~~v~~g~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~E 152 (152)
T d2ahra2 78 --HFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFGSTFDISE 152 (152)
T ss_dssp --CCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTEEEEECCG
T ss_pred --ccceeEecccccccHHHHHhhhcccccchhhccchhhhcCccceEEEeCCCCCHHHHHHHHHHHHhCCCEEEecC
Confidence 467899999999999999999987778999999999999999999999988899999999999999999999986
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.91 E-value=1e-24 Score=182.58 Aligned_cols=137 Identities=26% Similarity=0.381 Sum_probs=116.5
Q ss_pred CcEEEEcCChhhHHHHHHHH-----------hhcHH---HHh-hCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhc
Q psy6714 133 SDKQIAGTTERGPGALIASL-----------NIVSK---ATG-TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al-----------~r~~e---~l~-e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~ 197 (303)
|||||||+|+||.+ ++..+ ++..+ .+. +.|+.+..+.++ +.++|+|||||||+++.++++++.
T Consensus 1 MkI~fIG~G~MG~a-i~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavkP~~~~~v~~~l~ 78 (152)
T d1yqga2 1 MNVYFLGGGNMAAA-VAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVKPQDMEAACKNIR 78 (152)
T ss_dssp CEEEEECCSHHHHH-HHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSCHHHHHHHHTTCC
T ss_pred CEEEEEcCcHHHHH-HHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecCHHHHHHhHHHHh
Confidence 89999999999995 44432 12222 333 568887666654 678999999999999999998886
Q ss_pred cccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEcC
Q psy6714 198 PVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEVP 274 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~vd 274 (303)
+ .+++|||+++|++++.|++.++...+++|+|||+|..+++|++.++++...++++++.+++||+.+|.++++|
T Consensus 79 ~---~~~~viS~~ag~~~~~l~~~l~~~~~iir~mpn~p~~~~~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~vd 152 (152)
T d1yqga2 79 T---NGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTVWLD 152 (152)
T ss_dssp C---TTCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEEEEECS
T ss_pred h---cccEEeecccCCCHHHHHHHhCcCcceEeecccchhHhcCCcEEEEeCCCCCHHHHHHHHHHHHhCCCEEEeC
Confidence 4 5789999999999999999998667899999999999999999999998889999999999999999999885
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.71 E-value=6e-17 Score=135.59 Aligned_cols=135 Identities=11% Similarity=0.127 Sum_probs=99.5
Q ss_pred CcEEEEcCChhhHHHHHHHHh----------hcH---HHHhhCCC-eEecChHHhhcCCCEEEEeeCCccHHHHHHhhcc
Q psy6714 133 SDKQIAGTTERGPGALIASLN----------IVS---KATGTMGA-KITFDNKEVTLNSEVIILAVKPHIVPVALNDIKP 198 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~----------r~~---e~l~e~Gv-~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~ 198 (303)
|||||||+|+||+ +|++.+. ++. +++++.|+ ....++.+++++||+||||||+..+.++++++.+
T Consensus 1 MkI~iIG~G~mG~-~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~~~~~vl~~l~~ 79 (165)
T d2f1ka2 1 MKIGVVGLGLIGA-SLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQLILPTLEKLIP 79 (165)
T ss_dssp CEEEEECCSHHHH-HHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHHHHHHHHHHHGG
T ss_pred CEEEEEeecHHHH-HHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcHhhhhhhhhhhhh
Confidence 8999999999999 6776642 222 34556675 3445667889999999999999999999999999
Q ss_pred ccCCCCEEEEecCCCcHHH---HHhhCCCCCceEEEecCcHHh-----------hhCCcEEEEeCCCCCHHHHHHHHHHH
Q psy6714 199 VFNESNLLISVAGGVPIKN---MEQALPKNSRIIRAMPNTPAL-----------VRQGASVFVRGSSASDQDAQTVINLF 264 (303)
Q Consensus 199 ~L~~g~IVVSiaaGV~ie~---L~~~l~~~~~VVr~mPn~p~~-----------v~~G~til~~g~~~~~e~~e~V~~Lf 264 (303)
.++++++|+++ ++++... +.+..+ .++..||..... +.....++++....++++.+.+++||
T Consensus 80 ~l~~~~iv~~~-~s~~~~~~~~~~~~~~---~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~v~~l~ 155 (165)
T d2f1ka2 80 HLSPTAIVTDV-ASVKTAIAEPASQLWS---GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVL 155 (165)
T ss_dssp GSCTTCEEEEC-CSCCHHHHHHHHHHST---TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred hcccccceeec-cccchHHHHHHHHhhc---ccccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 99888877755 5565543 333333 466676654321 22334567877888999999999999
Q ss_pred HhcCCcEE
Q psy6714 265 KSVGTCEE 272 (303)
Q Consensus 265 s~iG~~v~ 272 (303)
+.+|..++
T Consensus 156 ~~lG~~v~ 163 (165)
T d2f1ka2 156 EPLGVKIY 163 (165)
T ss_dssp GGGTCEEE
T ss_pred HHhCCEEE
Confidence 99997654
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.64 E-value=5.8e-16 Score=129.64 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=98.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhc------------H---HHHhhCCC--eEecChHH-hhcCCCEEEEeeCCccHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIV------------S---KATGTMGA--KITFDNKE-VTLNSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~------------~---e~l~e~Gv--~v~~d~~e-av~~ADIVILAVpP~~v~~VL 193 (303)
|+||+|||+|+||+ +|++.+.+. . +.+++.|+ ....+..+ ...++|+||+|+|++.+.+++
T Consensus 1 Mk~I~IIG~G~mG~-sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~vl 79 (171)
T d2g5ca2 1 MQNVLIVGVGFMGG-SFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIA 79 (171)
T ss_dssp CCEEEEESCSHHHH-HHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHH
T ss_pred CCEEEEEccCHHHH-HHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCchhhhhhh
Confidence 45699999999999 788775321 1 23456665 34444443 345799999999999999999
Q ss_pred HhhccccCCCCEEEEecCCCcH---HHHHhhCCCCCceEEEecCcHHh-----------hhCCcEEEEeCCCCCHHHHHH
Q psy6714 194 NDIKPVFNESNLLISVAGGVPI---KNMEQALPKNSRIIRAMPNTPAL-----------VRQGASVFVRGSSASDQDAQT 259 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSiaaGV~i---e~L~~~l~~~~~VVr~mPn~p~~-----------v~~G~til~~g~~~~~e~~e~ 259 (303)
.++.++++++++|++ +++++. +.+...++. +++..||....+ +.....++++....+++.++.
T Consensus 80 ~~l~~~~~~~~ii~d-~~s~k~~~~~~~~~~~~~--~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~~~~~~~ 156 (171)
T d2g5ca2 80 KKLSYILSEDATVTD-QGSVKGKLVYDLENILGK--RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKL 156 (171)
T ss_dssp HHHHHHSCTTCEEEE-CCSCCTHHHHHHHHHHGG--GEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHH
T ss_pred hhhhccccccccccc-cccccHHHHHHHHHhhcc--cccccccccccccccHHHHHHHhhCCCeEEEecCCCCCHHHHHH
Confidence 999999988877664 455544 445555653 677777754321 223456788888889999999
Q ss_pred HHHHHHhcCCcEE
Q psy6714 260 VINLFKSVGTCEE 272 (303)
Q Consensus 260 V~~Lfs~iG~~v~ 272 (303)
++++|+.+|..+.
T Consensus 157 v~~~~~~lG~~v~ 169 (171)
T d2g5ca2 157 VKRVWEDVGGVVE 169 (171)
T ss_dssp HHHHHHHTTCEEE
T ss_pred HHHHHHHcCCEEE
Confidence 9999999997543
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.61 E-value=4.5e-17 Score=134.58 Aligned_cols=135 Identities=8% Similarity=0.054 Sum_probs=89.2
Q ss_pred EEEEcCChhhHHHHHHHH----------hhcHH---HHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccccC
Q psy6714 135 KQIAGTTERGPGALIASL----------NIVSK---ATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFN 201 (303)
Q Consensus 135 IgIIGlG~MG~~~La~al----------~r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~ 201 (303)
|||||+|+||.+ |+..+ +++.+ .+.+.+.....++.++++++|+||||||++++.+++.++. .
T Consensus 2 IgfIG~G~mg~~-l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~~i~~v~~~l~---~ 77 (153)
T d2i76a2 2 LNFVGTGTLTRF-FLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRYIKTVANHLN---L 77 (153)
T ss_dssp CEEESCCHHHHH-HHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTTHHHHHTTTC---C
T ss_pred EEEEeCcHHHHH-HHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccchhhhHHHhhhc---c
Confidence 899999999994 66543 23333 3444444455778889999999999999999999998875 3
Q ss_pred CCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhh--CCcEEEEeCCCCCHHHHHHHHHHHHhcC-CcEEcCCC
Q psy6714 202 ESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVR--QGASVFVRGSSASDQDAQTVINLFKSVG-TCEEVPEY 276 (303)
Q Consensus 202 ~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~--~G~til~~g~~~~~e~~e~V~~Lfs~iG-~~v~vdE~ 276 (303)
++++|||++++++.+.++.........++.+++...... .+.+++..+ +++.++.+++||+.+| .+++++++
T Consensus 78 ~~~ivi~~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---d~~~~~~~~~l~~~lG~~~~~i~~e 152 (153)
T d2i76a2 78 GDAVLVHCSGFLSSEIFKKSGRASIHPNFSFSSLEKALEMKDQIVFGLEG---DERGLPIVKKIAEEISGKYFVIPSE 152 (153)
T ss_dssp SSCCEEECCSSSCGGGGCSSSEEEEEECSCC--CTTGGGCGGGCCEEECC---CTTTHHHHHHHHHHHCSCEEECCGG
T ss_pred cceeeeecccchhhhhhhhhccccceeeeecccccchhhhccCcEEEEeC---CHHHHHHHHHHHHHHCCcEEEeCCC
Confidence 688999999999988766543211112222222222221 223343433 5678899999999999 57888765
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.48 E-value=9.8e-14 Score=115.97 Aligned_cols=133 Identities=19% Similarity=0.199 Sum_probs=93.1
Q ss_pred CcEEEEcCChhhHHHHHHHH----------hhcHH---HHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH---Hh
Q psy6714 133 SDKQIAGTTERGPGALIASL----------NIVSK---ATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL---ND 195 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL---~e 195 (303)
|||||||+|.||.+ ++..+ ++..+ .+.+.|.....++.+++++||+||+||| +.++++|+ ..
T Consensus 1 MkIgiIGlG~MG~~-~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~ 79 (161)
T d1vpda2 1 MKVGFIGLGIMGKP-MSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENG 79 (161)
T ss_dssp CEEEEECCSTTHHH-HHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred CEEEEEehhHHHHH-HHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcc
Confidence 89999999999996 54432 23333 4567788888999999999999999996 88888887 45
Q ss_pred hccccCCCCEEEEecCCCcHH---HHHhhCC-CCCceEEEe-cCcHHhhhCC-cEEEEeCCCCCHHHHHHHHHHHHhcCC
Q psy6714 196 IKPVFNESNLLISVAGGVPIK---NMEQALP-KNSRIIRAM-PNTPALVRQG-ASVFVRGSSASDQDAQTVINLFKSVGT 269 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~ie---~L~~~l~-~~~~VVr~m-Pn~p~~v~~G-~til~~g~~~~~e~~e~V~~Lfs~iG~ 269 (303)
+.+.++++++||.+.. +..+ .+.+.+. .+..++.+. ...+.....| .++++.+ +++.++.++++|+.+|.
T Consensus 80 ~~~~~~~g~iiid~sT-~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~gG---~~~~~~~~~~il~~~~~ 155 (161)
T d1vpda2 80 IIEGAKPGTVLIDMSS-IAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGG---DKAIFDKYYDLMKAMAG 155 (161)
T ss_dssp HHHHCCTTCEEEECSC-CCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEES---CHHHHHHHHHHHHTTEE
T ss_pred hhhccCCCCEEEECCC-CCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEEcC---CHHHHHHHHHHHHHhcC
Confidence 6777888999986654 4433 3344443 234444432 1223333334 4666666 78899999999999996
Q ss_pred c
Q psy6714 270 C 270 (303)
Q Consensus 270 ~ 270 (303)
.
T Consensus 156 ~ 156 (161)
T d1vpda2 156 S 156 (161)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.40 E-value=1.9e-13 Score=113.00 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=84.5
Q ss_pred CcEEEEcCChhhHHHHHHHHhhc-------------HHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccc
Q psy6714 133 SDKQIAGTTERGPGALIASLNIV-------------SKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPV 199 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~r~-------------~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~ 199 (303)
|||||||+|+||. .+++.+.+. ...+...|+.+..++.|++++||+||+|||++...+++.++.+.
T Consensus 1 MkIgiIG~G~mG~-~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~~~~~~~~~ 79 (152)
T d1i36a2 1 LRVGFIGFGEVAQ-TLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARRAGRH 79 (152)
T ss_dssp CEEEEESCSHHHH-HHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHHHHHHHHTT
T ss_pred CEEEEEcHHHHHH-HHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHHHHHhhccc
Confidence 8999999999999 466553211 11223334445577889999999999999999999999888776
Q ss_pred cCCCCEEEEec--CCCcHHHHHhhCCCCCceEEE--ecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCcEEc
Q psy6714 200 FNESNLLISVA--GGVPIKNMEQALPKNSRIIRA--MPNTPALVRQGASVFVRGSSASDQDAQTVINLFKSVGTCEEV 273 (303)
Q Consensus 200 L~~g~IVVSia--aGV~ie~L~~~l~~~~~VVr~--mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~v~v 273 (303)
+ ++++|.+. .+.....+.+.+++ ..++.+ +.. +...+.+..+++.|+ +.+.++ .|+.+|..+..
T Consensus 80 ~--~~~~id~st~~p~~~~~l~~~~~~-~~~~d~~v~g~-~~~~~~~~~~~~~G~--~~~~~~----~l~~~g~~i~~ 147 (152)
T d1i36a2 80 V--RGIYVDINNISPETVRMASSLIEK-GGFVDAAIMGS-VRRKGADIRIIASGR--DAEEFM----KLNRYGLNIEV 147 (152)
T ss_dssp C--CSEEEECSCCCHHHHHHHHHHCSS-SEEEEEEECSC-HHHHGGGCEEEEEST--THHHHH----GGGGGTCEEEE
T ss_pred C--CceeeccCcCCHHHHHHHHHHHhc-cCCCcccccCC-cccccCCcEEEEECC--CHHHHH----HHHHcCCeeeE
Confidence 5 45666443 22234667777764 334322 333 334466677777765 233332 37788976543
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.35 E-value=2e-12 Score=106.23 Aligned_cols=129 Identities=17% Similarity=0.167 Sum_probs=92.8
Q ss_pred CCCcEEEEc-CChhhHHHHHHHHhhcHHHHhhCCCeEe-------cChHHhhcCCCEEEEeeCCccHHHHHHhhccccCC
Q psy6714 131 NRSDKQIAG-TTERGPGALIASLNIVSKATGTMGAKIT-------FDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNE 202 (303)
Q Consensus 131 ~~mkIgIIG-lG~MG~~~La~al~r~~e~l~e~Gv~v~-------~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~ 202 (303)
+++||+||| +|+||+ +|++.+ ++.|+.+. ....+.+.++|++++|+++..+.+++.++.+++++
T Consensus 8 ~~~kI~iIGg~G~mG~-~la~~L-------~~~G~~V~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~ 79 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGG-LFARYL-------RASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIERLKPYLTE 79 (152)
T ss_dssp TCCCEEEETTTSHHHH-HHHHHH-------HTTTCCEEEECTTCGGGHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCT
T ss_pred CCCeEEEEcCCCHHHH-HHHHHH-------HHcCCCcEecccccccccchhhhhccccccccchhhheeeeecccccccC
Confidence 478999999 999999 576553 33444321 23456778999999999999999999999999988
Q ss_pred CCEEEEecCCCcHHH---HHhhCCCCCceEEEecCcHHhhh--CCc-EEEEeCCCCCHHHHHHHHHHHHhcCCcEE
Q psy6714 203 SNLLISVAGGVPIKN---MEQALPKNSRIIRAMPNTPALVR--QGA-SVFVRGSSASDQDAQTVINLFKSVGTCEE 272 (303)
Q Consensus 203 g~IVVSiaaGV~ie~---L~~~l~~~~~VVr~mPn~p~~v~--~G~-til~~g~~~~~e~~e~V~~Lfs~iG~~v~ 272 (303)
+++|+ ++++++.+. +.+.++ ..++..||......+ .+. .+++.+. +++..++++++|+.+|..++
T Consensus 80 ~~iii-D~~Svk~~~~~~~~~~~~--~~~v~~hP~~Gp~~~~~~g~~~v~~~g~--~~~~~~~~~~ll~~~Ga~v~ 150 (152)
T d2pv7a2 80 NMLLA-DLTSVKREPLAKMLEVHT--GAVLGLHPMFGADIASMAKQVVVRCDGR--FPERYEWLLEQIQIWGAKIY 150 (152)
T ss_dssp TSEEE-ECCSCCHHHHHHHHHHCS--SEEEEEEECSCTTCSCCTTCEEEEEEEE--CGGGTHHHHHHHHHTTCEEE
T ss_pred CceEE-EecccCHHHHHHHHHHcc--CCEEEecccCCCcccccCCcEEEEecCC--CHHHHHHHHHHHHHhCCEEE
Confidence 98877 446777654 444554 357778887654333 343 3445443 55678999999999998654
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.32 E-value=5.9e-12 Score=105.12 Aligned_cols=134 Identities=15% Similarity=0.246 Sum_probs=91.3
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcH---HHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHHHh--
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVS---KATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVALND-- 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~---e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL~e-- 195 (303)
|+||||||+|.||.+ +++.+ +++. +.+...|.....+..++++.+|+||+||+ ++.+++++..
T Consensus 1 M~kIg~IGlG~MG~~-iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~ 79 (162)
T d3cuma2 1 MKQIAFIGLGHMGAP-MATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDD 79 (162)
T ss_dssp CCEEEEECCSTTHHH-HHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTT
T ss_pred CCEEEEEEEHHHHHH-HHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccc
Confidence 678999999999995 55442 2232 24557788888899999999999999998 4556667643
Q ss_pred -hccccCCCCEEEEecCCCcHH---HHHhhCC-CCCceEEE-ecCcHHhhhCCc-EEEEeCCCCCHHHHHHHHHHHHhcC
Q psy6714 196 -IKPVFNESNLLISVAGGVPIK---NMEQALP-KNSRIIRA-MPNTPALVRQGA-SVFVRGSSASDQDAQTVINLFKSVG 268 (303)
Q Consensus 196 -I~~~L~~g~IVVSiaaGV~ie---~L~~~l~-~~~~VVr~-mPn~p~~v~~G~-til~~g~~~~~e~~e~V~~Lfs~iG 268 (303)
+.+.+.++++||.+. .++.+ .+.+.+. .+..++.+ +-..|.....|. ++++.+ +++.++.++.+|+.+|
T Consensus 80 ~~~~~l~~g~iiid~s-t~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~~~gG---~~~~~~~~~~il~~~~ 155 (162)
T d3cuma2 80 GLLAHIAPGTLVLECS-TIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGG---DAEALEKARPLFEAMG 155 (162)
T ss_dssp CHHHHSCTTCEEEECS-CCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEES---CHHHHHHHHHHHHHHE
T ss_pred cccccCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEEEecC---CHHHHHHHHHHHHHHc
Confidence 556677899988554 44443 3444442 23344432 122344445564 566665 7889999999999999
Q ss_pred Cc
Q psy6714 269 TC 270 (303)
Q Consensus 269 ~~ 270 (303)
..
T Consensus 156 ~~ 157 (162)
T d3cuma2 156 RN 157 (162)
T ss_dssp EE
T ss_pred Cc
Confidence 64
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.29 E-value=2.9e-12 Score=110.45 Aligned_cols=136 Identities=14% Similarity=0.141 Sum_probs=98.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----------hcHHH---H----------h----hCCCeEecChHHhhcCCCEEEEee
Q psy6714 132 RSDKQIAGTTERGPGALIASLN----------IVSKA---T----------G----TMGAKITFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~----------r~~e~---l----------~----e~Gv~v~~d~~eav~~ADIVILAV 184 (303)
|+||+|||.|.||. .|+..+. ++.+. + . ...+.++.+..++++++|+||+||
T Consensus 7 m~KI~ViGaG~wGt-AlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiav 85 (189)
T d1n1ea2 7 LNKAVVFGSGAFGT-ALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVI 85 (189)
T ss_dssp EEEEEEECCSHHHH-HHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECS
T ss_pred eceEEEECCCHHHH-HHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcC
Confidence 45799999999999 4665431 11111 1 1 113456788899999999999999
Q ss_pred CCccHHHHHHhhccc-----cCCCCEEEEecCCCcH-------HHHHhhCCCCCceEEEecCcHHhhhCCc-EEEEeCCC
Q psy6714 185 KPHIVPVALNDIKPV-----FNESNLLISVAGGVPI-------KNMEQALPKNSRIIRAMPNTPALVRQGA-SVFVRGSS 251 (303)
Q Consensus 185 pP~~v~~VL~eI~~~-----L~~g~IVVSiaaGV~i-------e~L~~~l~~~~~VVr~mPn~p~~v~~G~-til~~g~~ 251 (303)
|.+.++++++++.++ ++.+.+||+++.|+.. +.+.+.++.....+-..|+++.++.+|. +.++.+ .
T Consensus 86 Ps~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vlsGP~~A~Ev~~~~pt~~viA-s 164 (189)
T d1n1ea2 86 PTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSIA-S 164 (189)
T ss_dssp CHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCEEEEEE-C
T ss_pred cHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEEecCCcHHHHHcCCCcEEEEE-e
Confidence 999999999998763 3467778999999964 3456666643344677899999998885 444443 3
Q ss_pred CCHHHHHHHHHHHHhcCC
Q psy6714 252 ASDQDAQTVINLFKSVGT 269 (303)
Q Consensus 252 ~~~e~~e~V~~Lfs~iG~ 269 (303)
.+.+..+.++++|++-..
T Consensus 165 ~~~~~a~~i~~lfst~~~ 182 (189)
T d1n1ea2 165 ADINVARRLQRIMSTGDR 182 (189)
T ss_dssp SSHHHHHHHHHHHSCTTS
T ss_pred CCHHHHHHHHHHhCCCCC
Confidence 478888999999986543
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.23 E-value=5.3e-12 Score=107.41 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=90.4
Q ss_pred CcEEEEcCChhhHHHHHHHHh----------h--cHHH---Hhh------CC-------CeEecChHHhhcCCCEEEEee
Q psy6714 133 SDKQIAGTTERGPGALIASLN----------I--VSKA---TGT------MG-------AKITFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~----------r--~~e~---l~e------~G-------v~v~~d~~eav~~ADIVILAV 184 (303)
|||+|||.|.||. .|+..+- + ..+. +.+ ++ +...++..++++++|+||+||
T Consensus 1 MkI~ViGaG~~Gt-alA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~av 79 (180)
T d1txga2 1 MIVSILGAGAMGS-ALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGV 79 (180)
T ss_dssp CEEEEESCCHHHH-HHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECS
T ss_pred CEEEEECCCHHHH-HHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhccc
Confidence 8999999999999 5665431 1 1111 111 11 123466778899999999999
Q ss_pred CCccHHHHHHhhccccCCCCEEEEecCCCc---------HHHHHhhCCCC--CceEEEecCcHHhhhCCcE-EEEeCCCC
Q psy6714 185 KPHIVPVALNDIKPVFNESNLLISVAGGVP---------IKNMEQALPKN--SRIIRAMPNTPALVRQGAS-VFVRGSSA 252 (303)
Q Consensus 185 pP~~v~~VL~eI~~~L~~g~IVVSiaaGV~---------ie~L~~~l~~~--~~VVr~mPn~p~~v~~G~t-il~~g~~~ 252 (303)
|++.++++++++.++++++ .+|.++.|+. .+.+.+..+.. ..++-..|+++.++..+.. .++.+ ..
T Consensus 80 ps~~~~~~~~~l~~~l~~~-~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~~~~pt~~via-s~ 157 (180)
T d1txga2 80 STDGVLPVMSRILPYLKDQ-YIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFS-SP 157 (180)
T ss_dssp CGGGHHHHHHHHTTTCCSC-EEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEEE-CS
T ss_pred chhhhHHHHHhhccccccc-eecccccCccccccccccchHHHHhhhcccccceeEEcCCccHHHHHcCCCcEEEEE-cC
Confidence 9999999999999998665 4555655552 13445544421 2345677999999988753 33332 33
Q ss_pred CHHHHHHHHHHHHhcC
Q psy6714 253 SDQDAQTVINLFKSVG 268 (303)
Q Consensus 253 ~~e~~e~V~~Lfs~iG 268 (303)
+.+..+.++++|+.=.
T Consensus 158 ~~~~a~~i~~~f~~~~ 173 (180)
T d1txga2 158 SESSANKMKEIFETEY 173 (180)
T ss_dssp CHHHHHHHHHHHCBTT
T ss_pred CHHHHHHHHHHHCCCC
Confidence 7888899999997633
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.15 E-value=2.7e-11 Score=102.18 Aligned_cols=135 Identities=15% Similarity=0.166 Sum_probs=87.1
Q ss_pred CcEEEEcCChhhHHHHHHHH---------hhcHHH---HhhCCC--------eEecChHHhhcCCCEEEEeeC-CccHHH
Q psy6714 133 SDKQIAGTTERGPGALIASL---------NIVSKA---TGTMGA--------KITFDNKEVTLNSEVIILAVK-PHIVPV 191 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al---------~r~~e~---l~e~Gv--------~v~~d~~eav~~ADIVILAVp-P~~v~~ 191 (303)
.+|||||||.||.+|..... +++.++ +.+.+. ....+..+++..+|+||++++ .+.+.+
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~ 82 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN 82 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHHH
Confidence 46999999999996433322 333333 323222 223455677889999999997 677889
Q ss_pred HHHhhccccCCCCEEEEecCCCcHH---HHHhhC-CCCCceEEE-ecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHHHHh
Q psy6714 192 ALNDIKPVFNESNLLISVAGGVPIK---NMEQAL-PKNSRIIRA-MPNTPALVRQGASVFVRGSSASDQDAQTVINLFKS 266 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSiaaGV~ie---~L~~~l-~~~~~VVr~-mPn~p~~v~~G~til~~g~~~~~e~~e~V~~Lfs~ 266 (303)
++.++.+.++++++||.+.. +..+ .+.+.+ ..+..++.+ +...+.....|.++++.| +++.++.++.+|+.
T Consensus 83 v~~~l~~~~~~g~iiid~sT-~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~~~~~gG---~~~~~~~~~~il~~ 158 (176)
T d2pgda2 83 FIEKLVPLLDIGDIIIDGGN-SEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGG---NKEAWPHIKAIFQG 158 (176)
T ss_dssp HHHHHHHHCCTTCEEEECSC-CCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEE---CTTTHHHHHHHHHH
T ss_pred HHHHHHhccccCcEEEecCc-chhHHHHHHHHHHHhcCCceeccccccCcccccCCcEEEcCC---CHHHHHHHHHHHHH
Confidence 99999988989999886543 4333 233333 223344432 333343344566777766 56678999999999
Q ss_pred cCCcE
Q psy6714 267 VGTCE 271 (303)
Q Consensus 267 iG~~v 271 (303)
+|..+
T Consensus 159 ~~~kv 163 (176)
T d2pgda2 159 IAAKV 163 (176)
T ss_dssp HSCBC
T ss_pred Hhccc
Confidence 99754
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=4.3e-11 Score=97.95 Aligned_cols=136 Identities=12% Similarity=0.187 Sum_probs=87.0
Q ss_pred CcEEEEcCChhhHHHHHHHHhhc----------HHHH---hhC-------CCeEecChHHhhcCCCEEEEeeCCccHHHH
Q psy6714 133 SDKQIAGTTERGPGALIASLNIV----------SKAT---GTM-------GAKITFDNKEVTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~r~----------~e~l---~e~-------Gv~v~~d~~eav~~ADIVILAVpP~~v~~V 192 (303)
|||+|||+|.||+ .|+..+.+. .+.. ... ...+..+..+.+..+|+||+|||+.+++++
T Consensus 1 MkI~IiGaG~iG~-~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~~~~~~ 79 (167)
T d1ks9a2 1 MKITVLGCGALGQ-LWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDA 79 (167)
T ss_dssp CEEEEECCSHHHH-HHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGHHHH
T ss_pred CEEEEECcCHHHH-HHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecccchHHH
Confidence 8999999999999 566554221 1111 000 112344566778899999999999999999
Q ss_pred HHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHH--------hhhCCcEEEEeCCCCCHHHHHHHHHHH
Q psy6714 193 LNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPA--------LVRQGASVFVRGSSASDQDAQTVINLF 264 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~--------~v~~G~til~~g~~~~~e~~e~V~~Lf 264 (303)
++.+.+++.++++||++++|+..+..-.... .+++...+.+.. ..+.|.+.+-... ...+..+.+.++|
T Consensus 80 ~~~l~~~~~~~~~Iv~~qNG~~~~~~l~~~~--~~v~~g~~~~~~~~~~~~i~~~~~g~t~ig~~~-~~~~~~~~l~~~l 156 (167)
T d1ks9a2 80 VKSLASTLPVTTPILLIHNGMGTIEELQNIQ--QPLLMGTTTHAARRDGNVIIHVANGITHIGPAR-QQDGDYSYLADIL 156 (167)
T ss_dssp HHHHHTTSCTTSCEEEECSSSCTTGGGTTCC--SCEEEEEECCEEEEETTEEEEEECCCEEEEESS-GGGTTCTHHHHHH
T ss_pred HHhhccccCcccEEeeccCcccHHHHHhhcC--CcEEEEEeeEeEEecCCEEEEeCCcCEEEeeCC-CcchhHHHHHHHH
Confidence 9999999988999999999997643222222 345544433322 2234555554332 2334457788888
Q ss_pred HhcC-CcEE
Q psy6714 265 KSVG-TCEE 272 (303)
Q Consensus 265 s~iG-~~v~ 272 (303)
+... .+.|
T Consensus 157 ~~a~~~~~W 165 (167)
T d1ks9a2 157 QTVLPDVAW 165 (167)
T ss_dssp HTTSSCEEE
T ss_pred HhhCCCCcc
Confidence 7553 3444
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.91 E-value=2e-10 Score=94.86 Aligned_cols=129 Identities=12% Similarity=0.145 Sum_probs=81.0
Q ss_pred cEEEEcCChhhHHHHHHHH--------hhcHH---HH-hhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHHHhhcccc
Q psy6714 134 DKQIAGTTERGPGALIASL--------NIVSK---AT-GTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVF 200 (303)
Q Consensus 134 kIgIIGlG~MG~~~La~al--------~r~~e---~l-~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L 200 (303)
||||||+|.||.+|..... ++..+ .+ .+.+.. .+..+.+.++|++|++++ +..+..+..++...+
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~ 79 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFGSE--AVPLERVAEARVIFTCLPTTREVYEVAEALYPYL 79 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEEEECSSTHHHHHHHHHHCCE--ECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTTC
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHcCCc--ccccccccceeEEEecccchhhhhhhhccccccc
Confidence 7999999999996443332 12222 22 233332 334566778999999997 666777778888888
Q ss_pred CCCCEEEEecCCCcH---HHHHhhCCC-CCceEEE-ecCcHHhhhCCc-EEEEeCCCCCHHHHHHHHHHHHhcCC
Q psy6714 201 NESNLLISVAGGVPI---KNMEQALPK-NSRIIRA-MPNTPALVRQGA-SVFVRGSSASDQDAQTVINLFKSVGT 269 (303)
Q Consensus 201 ~~g~IVVSiaaGV~i---e~L~~~l~~-~~~VVr~-mPn~p~~v~~G~-til~~g~~~~~e~~e~V~~Lfs~iG~ 269 (303)
.++++||.+.. ++. ..+.+.+.. +..++.+ +...+.....|. ++++.| +++.++.++.+|+ ++.
T Consensus 80 ~~~~~iid~sT-~~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~vgG---~~~~~~~~~p~L~-~~~ 149 (156)
T d2cvza2 80 REGTYWVDATS-GEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGG---PEEAVERVRPFLA-YAK 149 (156)
T ss_dssp CTTEEEEECSC-CCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEES---CHHHHHHHGGGCT-TEE
T ss_pred ccccccccccc-CCHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEEEeC---CHHHHHHHHHHHH-hcC
Confidence 88988885543 333 345555532 2233322 233333444554 666766 7889999999995 664
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=2e-08 Score=85.98 Aligned_cols=109 Identities=13% Similarity=0.203 Sum_probs=85.5
Q ss_pred CeEecChHHhhcCCCEEEEeeCCc-cH-HHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhC
Q psy6714 164 AKITFDNKEVTLNSEVIILAVKPH-IV-PVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQ 241 (303)
Q Consensus 164 v~v~~d~~eav~~ADIVILAVpP~-~v-~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~ 241 (303)
+..+.|..+++.+||+||=|++-+ .+ .+++.+|.+..++++++.|-..++++..|...+....+++.+|+--|... .
T Consensus 77 i~~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~HffnP~~~-~ 155 (192)
T d1f0ya2 77 IATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPV-M 155 (192)
T ss_dssp EEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTT-C
T ss_pred ccccchhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhhccCHhHEEeeccccccCc-c
Confidence 345677788899999999999733 33 37888999888899999999999999999998765457888887655422 2
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEc
Q psy6714 242 GASVFVRGSSASDQDAQTVINLFKSVGTC-EEV 273 (303)
Q Consensus 242 G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~v 273 (303)
...=++++...+++..+.+.++++.+|+. +.+
T Consensus 156 ~lVEIv~g~~T~~~~i~~~~~~~~~lgk~pV~v 188 (192)
T d1f0ya2 156 KLVEVIKTPMTSQKTFESLVDFSKALGKHPVSC 188 (192)
T ss_dssp CEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 23335788889999999999999999984 555
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=98.87 E-value=2.1e-09 Score=96.08 Aligned_cols=109 Identities=16% Similarity=0.251 Sum_probs=78.8
Q ss_pred hCCCeEecChHHhhcCCCEEEEeeC-CccHHHHHHhhccccCCCCEEEEecCCCcHH---HHHhhCCCCCceEEEecCcH
Q psy6714 161 TMGAKITFDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFNESNLLISVAGGVPIK---NMEQALPKNSRIIRAMPNTP 236 (303)
Q Consensus 161 e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie---~L~~~l~~~~~VVr~mPn~p 236 (303)
+.|+.+++|+.|+++++|+||+||| ++.+.+++++|.++++++++|+++ +.++.. .+.+.+.. +.+++++++|
T Consensus 126 e~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~-STi~~~~~~~l~e~l~~--kgi~vi~~hp 202 (242)
T d2b0ja2 126 DVGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHA-CTIPTTKFAKIFKDLGR--EDLNITSYHP 202 (242)
T ss_dssp GGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEEC-SSSCHHHHHHHHHHTTC--TTSEEEECBC
T ss_pred HCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEec-CCCcHHHHHHHHHhccc--CCCEEECCCc
Confidence 4688999999999999999999996 677899999999999999887644 445543 45555542 2234444444
Q ss_pred Hhhh--CCcEEEEeCCCCCHHHHHHHHHHHHhcCCc-EEc
Q psy6714 237 ALVR--QGASVFVRGSSASDQDAQTVINLFKSVGTC-EEV 273 (303)
Q Consensus 237 ~~v~--~G~til~~g~~~~~e~~e~V~~Lfs~iG~~-v~v 273 (303)
+.+. .|.+.++.+ ..+++.++.+.+||+.+|+. +.+
T Consensus 203 ~a~pe~~g~~li~~~-~aseE~iekv~elles~Gk~~~vv 241 (242)
T d2b0ja2 203 GCVPEMKGQVYIAEG-YASEEAVNKLYEIGKIARGKAFKM 241 (242)
T ss_dssp SSCTTTCCCEEEEES-SSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred cCcCccccceEEecC-CCCHHHHHHHHHHHHHHCCCeEeC
Confidence 4332 344444443 46899999999999999974 444
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=98.86 E-value=5e-09 Score=86.61 Aligned_cols=80 Identities=20% Similarity=0.263 Sum_probs=59.2
Q ss_pred CcEEEEcCChhhHHHHHHHH----------hhcHH---HHhhCC---------------CeEecChHHhhcCCCEEEEee
Q psy6714 133 SDKQIAGTTERGPGALIASL----------NIVSK---ATGTMG---------------AKITFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al----------~r~~e---~l~e~G---------------v~v~~d~~eav~~ADIVILAV 184 (303)
+||+|||+|.||.. ++..+ .+..+ .+.+.| ...+.++.++++++|+||+||
T Consensus 2 k~iaIiGaG~~G~~-~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v 80 (184)
T d1bg6a2 2 KTYAVLGLGNGGHA-FAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV 80 (184)
T ss_dssp CEEEEECCSHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred CEEEEECccHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence 68999999999994 55432 12222 222222 234567889999999999999
Q ss_pred CCccHHHHHHhhccccCCCCEEEEecCCCc
Q psy6714 185 KPHIVPVALNDIKPVFNESNLLISVAGGVP 214 (303)
Q Consensus 185 pP~~v~~VL~eI~~~L~~g~IVVSiaaGV~ 214 (303)
|.+.++++++++++++.++++|| ++.|..
T Consensus 81 ~~~~~~~~~~~i~~~l~~~~~iv-~~~g~~ 109 (184)
T d1bg6a2 81 PAIHHASIAANIASYISEGQLII-LNPGAT 109 (184)
T ss_dssp CGGGHHHHHHHHGGGCCTTCEEE-ESSCCS
T ss_pred chhHHHHHHHHhhhccCCCCEEE-EeCCCC
Confidence 99999999999999999998776 555543
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.84 E-value=1.3e-08 Score=85.02 Aligned_cols=135 Identities=14% Similarity=0.163 Sum_probs=84.0
Q ss_pred CcEEEEcCChhhHHHHHHHH----------hhcHHH---HhhCCC--------eEecCh---HHhhcCCCEEEEeeCC-c
Q psy6714 133 SDKQIAGTTERGPGALIASL----------NIVSKA---TGTMGA--------KITFDN---KEVTLNSEVIILAVKP-H 187 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al----------~r~~e~---l~e~Gv--------~v~~d~---~eav~~ADIVILAVpP-~ 187 (303)
|||||||+|.||.+ |++.+ +++.++ +.+.|. ....+. ...+..++.+++++++ .
T Consensus 2 MkIGvIGlG~MG~~-ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (178)
T d1pgja2 2 MDVGVVGLGVMGAN-LALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGA 80 (178)
T ss_dssp BSEEEECCSHHHHH-HHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSH
T ss_pred CEEEEEeehHHHHH-HHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcc
Confidence 89999999999996 54432 333333 322222 222222 2344678888888864 5
Q ss_pred cHHHHHHhhccccCCCCEEEEecCCCcH--HHHHhhC-CCCCceEEE-ecCcHHhhhCCcEEEEeCCCCCHHHHHHHHHH
Q psy6714 188 IVPVALNDIKPVFNESNLLISVAGGVPI--KNMEQAL-PKNSRIIRA-MPNTPALVRQGASVFVRGSSASDQDAQTVINL 263 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVVSiaaGV~i--e~L~~~l-~~~~~VVr~-mPn~p~~v~~G~til~~g~~~~~e~~e~V~~L 263 (303)
.+..++..+...+.+++++|.+...... ..+.+.+ ..+..++.. +...+.....|.++++.+ +++.++.++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~~~mvgG---~~~~~~~v~pi 157 (178)
T d1pgja2 81 ATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGG---TLSVWEEIRPI 157 (178)
T ss_dssp HHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEEEE---CHHHHHHHHHH
T ss_pred hhhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCcEEEeeC---CHHHHHHHHHH
Confidence 5667888888888899988866543322 2344444 223344432 333344445566677766 78999999999
Q ss_pred HHhcCCcE
Q psy6714 264 FKSVGTCE 271 (303)
Q Consensus 264 fs~iG~~v 271 (303)
|+.+|..+
T Consensus 158 l~~~~~~~ 165 (178)
T d1pgja2 158 VEAAAAKA 165 (178)
T ss_dssp HHHHSCBC
T ss_pred HHHHhccc
Confidence 99999654
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=98.69 E-value=1.3e-07 Score=80.26 Aligned_cols=102 Identities=20% Similarity=0.223 Sum_probs=78.7
Q ss_pred HHhhcCCCEEEEeeCCc-cH-HHHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHHhhhCCcEEEEe
Q psy6714 171 KEVTLNSEVIILAVKPH-IV-PVALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPALVRQGASVFVR 248 (303)
Q Consensus 171 ~eav~~ADIVILAVpP~-~v-~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~~v~~G~til~~ 248 (303)
.+.+.+||+||-|++-+ .+ .+++.+|..+.+++++|.|...++.+..|.+.+....+++..|+-.|..... ..=++.
T Consensus 78 ~~~~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~-lVEiv~ 156 (186)
T d1wdka3 78 YGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMP-LVEVIR 156 (186)
T ss_dssp STTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCC-EEEEEE
T ss_pred cccccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCC-eEEECC
Confidence 34578999999999733 33 3678889888889999999999999999999886545788888765543222 222467
Q ss_pred CCCCCHHHHHHHHHHHHhcCCc-EEc
Q psy6714 249 GSSASDQDAQTVINLFKSVGTC-EEV 273 (303)
Q Consensus 249 g~~~~~e~~e~V~~Lfs~iG~~-v~v 273 (303)
+...+++.++.+..+++.+|+. +.+
T Consensus 157 ~~~T~~~~~~~~~~~~~~lgk~pv~v 182 (186)
T d1wdka3 157 GEKSSDLAVATTVAYAKKMGKNPIVV 182 (186)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 7888999999999999999984 544
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.14 E-value=7.1e-06 Score=69.62 Aligned_cols=135 Identities=16% Similarity=0.112 Sum_probs=73.7
Q ss_pred CcEEEEcCChhhHHHHHHHH----------hhcHH-------------------HHh----hCCCeEecChHHhhcCCCE
Q psy6714 133 SDKQIAGTTERGPGALIASL----------NIVSK-------------------ATG----TMGAKITFDNKEVTLNSEV 179 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al----------~r~~e-------------------~l~----e~Gv~v~~d~~eav~~ADI 179 (303)
|||+|||+|.+|.+ ++..+ +.+.+ .+. ......+++..+++++||+
T Consensus 1 MkI~ViGlG~vGl~-~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~ 79 (202)
T d1mv8a2 1 MRISIFGLGYVGAV-CAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDV 79 (202)
T ss_dssp CEEEEECCSTTHHH-HHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSE
T ss_pred CEEEEECCCHhHHH-HHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCE
Confidence 89999999999985 44332 11111 111 1233566788899999999
Q ss_pred EEEeeC-Cc---------cHHHHHHhhcc---ccCCCCEEE--EecC-CCcHHHH----HhhCCC--CCc-eEEEecCcH
Q psy6714 180 IILAVK-PH---------IVPVALNDIKP---VFNESNLLI--SVAG-GVPIKNM----EQALPK--NSR-IIRAMPNTP 236 (303)
Q Consensus 180 VILAVp-P~---------~v~~VL~eI~~---~L~~g~IVV--Siaa-GV~ie~L----~~~l~~--~~~-VVr~mPn~p 236 (303)
+|+||+ |. .+..+++.+.. ...++.+|| |++. |.+.+.+ ++.... +.. .+.+.|---
T Consensus 80 i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~PE~~ 159 (202)
T d1mv8a2 80 SFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFL 159 (202)
T ss_dssp EEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCC
T ss_pred EEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhhhhh
Confidence 999997 31 24455554433 344666666 3332 3332222 222111 111 244444321
Q ss_pred H------hhhCCcEEEEeCCCCCHHHHHHHHHHHHhcCCc
Q psy6714 237 A------LVRQGASVFVRGSSASDQDAQTVINLFKSVGTC 270 (303)
Q Consensus 237 ~------~v~~G~til~~g~~~~~e~~e~V~~Lfs~iG~~ 270 (303)
. .+..--.+++++. +++..+.+++||+.+...
T Consensus 160 ~~G~a~~d~~~~~~iViG~~--~~~~~~~~~~ly~~i~~~ 197 (202)
T d1mv8a2 160 RESTAIKDYDFPPMTVIGEL--DKQTGDLLEEIYRELDAP 197 (202)
T ss_dssp CTTSHHHHHHSCSCEEEEES--SHHHHHHHHHHHTTSSSC
T ss_pred cccchhhhhcCCCeEEEEeC--CHHHHHHHHHHHHhcCCC
Confidence 1 1111122445543 678889999999998753
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=98.06 E-value=1.8e-05 Score=69.11 Aligned_cols=138 Identities=13% Similarity=0.171 Sum_probs=96.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh--------------------cHHHHhhCCCeE----ecChHHhhcCCCEEEEeeCCc
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI--------------------VSKATGTMGAKI----TFDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r--------------------~~e~l~e~Gv~v----~~d~~eav~~ADIVILAVpP~ 187 (303)
++||+|||.|.-|.+ =++.++. ..+++++.|+.+ ..+..|+++++|||++.+|.+
T Consensus 44 ~KkIaViGYGsQG~A-hAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlPDe 122 (226)
T d1qmga2 44 IKQIGVIGWGSQAPA-QAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDS 122 (226)
T ss_dssp CSEEEEECCSSHHHH-HHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSCHH
T ss_pred CCEEEEEEeccHHHH-HHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecchH
Confidence 468999999999973 3332221 224566778752 246678999999999999999
Q ss_pred cHHHHHHhhccccCCCCEEEEecCCCcHHHHHhh---CCCCCceEEEecCcHH-----hh--hC-----CcEEEE-eCCC
Q psy6714 188 IVPVALNDIKPVFNESNLLISVAGGVPIKNMEQA---LPKNSRIIRAMPNTPA-----LV--RQ-----GASVFV-RGSS 251 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~---l~~~~~VVr~mPn~p~-----~v--~~-----G~til~-~g~~ 251 (303)
.-.++.++|.+++++++.+ ..+-|..+...... .|.+..|+.+-|--|. .+ ++ |+..++ .-.+
T Consensus 123 ~Q~~vy~~I~p~Lk~G~~L-~FaHGFnI~~~~~~~~~~p~dvdVimVAPKgPGh~VR~~Y~~Gk~~~G~GVP~LiAV~QD 201 (226)
T d1qmga2 123 AQADNYEKVFSHMKPNSIL-GLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQD 201 (226)
T ss_dssp HHHHHHHHHHHHSCTTCEE-EESSSHHHHHHHHHTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTTTCCCCCEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCcee-eecchhhhhhceeeecccCCCceEEEECCCCCCchHHHHHHcccccCCCCceeEEEEEEC
Confidence 9999999999999999865 48888877443322 4556677766665543 22 22 765443 3344
Q ss_pred CCHHHHHHHHHHHHhcCCcE
Q psy6714 252 ASDQDAQTVINLFKSVGTCE 271 (303)
Q Consensus 252 ~~~e~~e~V~~Lfs~iG~~v 271 (303)
.+..+++........+|.-.
T Consensus 202 ~sG~A~~~alayA~aIG~g~ 221 (226)
T d1qmga2 202 VDGRATDVALGWSIALGSPF 221 (226)
T ss_dssp SSSCHHHHHHHHHHHHTCSE
T ss_pred CCCcHHHHHHHHHHhCCCCc
Confidence 56678889999999998654
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.86 E-value=3.1e-05 Score=65.52 Aligned_cols=135 Identities=18% Similarity=0.264 Sum_probs=93.3
Q ss_pred CCCcEEEEcCChhhHHHHHHHHh-----------h---cHHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHH-h
Q psy6714 131 NRSDKQIAGTTERGPGALIASLN-----------I---VSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALN-D 195 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~-----------r---~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~-e 195 (303)
+.++|+|||.|.=|.+ =++.++ . ..+++++.|+.+ .+..|+++++|||++.+|...-.++.+ +
T Consensus 15 k~k~IaViGYGsQG~A-hAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v-~~~~eA~~~aDiim~L~PD~~q~~vy~~~ 92 (182)
T d1np3a2 15 QGKKVAIIGYGSQGHA-HACNLKDSGVDVTVGLRSGSATVAKAEAHGLKV-ADVKTAVAAADVVMILTPDEFQGRLYKEE 92 (182)
T ss_dssp HTSCEEEECCSHHHHH-HHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEE-ECHHHHHHTCSEEEECSCHHHHHHHHHHH
T ss_pred CCCEEEEEeeCcHhHH-HHhhhhhcCCCEEEEcCCCCccHHHHhhhcccc-ccHHHHhhhcCeeeeecchHHHHHHHHHh
Confidence 4678999999999973 222221 1 224556789987 678899999999999999988889985 7
Q ss_pred hccccCCCCEEEEecCCCcHHHHHhhC-CCCCceEEEecCcHH-------hhhCCcEEEE-eCCCCCHHHHHHHHHHHHh
Q psy6714 196 IKPVFNESNLLISVAGGVPIKNMEQAL-PKNSRIIRAMPNTPA-------LVRQGASVFV-RGSSASDQDAQTVINLFKS 266 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV~ie~L~~~l-~~~~~VVr~mPn~p~-------~v~~G~til~-~g~~~~~e~~e~V~~Lfs~ 266 (303)
|.+++++++.+ ..+-|..+.. .... +.+..|+.+-|--|. .-+.|+..++ ...+.+....+........
T Consensus 93 I~p~lk~g~~L-~FaHGfnIh~-~~I~pp~~vdV~mvAPKgpG~~VR~~y~~G~Gvp~l~AV~qD~sg~A~~~alayA~~ 170 (182)
T d1np3a2 93 IEPNLKKGATL-AFAHGFSIHY-NQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVALSYACG 170 (182)
T ss_dssp TGGGCCTTCEE-EESCCHHHHT-TSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEECSSSCHHHHHHHHHHH
T ss_pred hhhhcCCCcEE-EEeccceEEe-eeeecCCCCceEeeccccccchhHHHhhcCCccceEEEEEeCCCccHHHHHHHHHHH
Confidence 99999999865 5888887642 2232 445666666655443 1245665433 3334456677788888888
Q ss_pred cCC
Q psy6714 267 VGT 269 (303)
Q Consensus 267 iG~ 269 (303)
+|.
T Consensus 171 iG~ 173 (182)
T d1np3a2 171 VGG 173 (182)
T ss_dssp TTH
T ss_pred hCc
Confidence 874
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.83 E-value=1.2e-05 Score=67.86 Aligned_cols=93 Identities=11% Similarity=0.065 Sum_probs=58.7
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcHH------H-HhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHH-Hhhcccc
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIVSK------A-TGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVAL-NDIKPVF 200 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~~e------~-l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL-~eI~~~L 200 (303)
+..++|||||+|.||. .++..++...- . ..+.......+.++++++||+|++++|-. ....++ .+....+
T Consensus 40 l~gk~vgIiG~G~IG~-~va~~l~~~g~~v~~~d~~~~~~~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~m 118 (181)
T d1qp8a1 40 IQGEKVAVLGLGEIGT-RVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALM 118 (181)
T ss_dssp CTTCEEEEESCSTHHH-HHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTS
T ss_pred ccCceEEEeccccccc-cceeeeeccccccccccccccccceeeeechhhhhhccchhhcccccccccccccccceeeec
Confidence 3468899999999999 45544322110 0 11222233467789999999999999832 333333 2334456
Q ss_pred CCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 201 NESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 201 ~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
+++.++|.+.=| ++.+.|.+.+.
T Consensus 119 k~~ailIN~~RG~ivd~~aL~~aL~ 143 (181)
T d1qp8a1 119 AEDAVFVNVGRAEVLDRDGVLRILK 143 (181)
T ss_dssp CTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred cccceEEeccccccccchhhhhhcc
Confidence 789999988644 55566766654
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=97.71 E-value=1.5e-05 Score=67.98 Aligned_cols=93 Identities=15% Similarity=0.147 Sum_probs=62.0
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhc------------HHHHhhCCCeEecChHHhhcCCCEEEEeeCC-ccHHHHH-Hh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIV------------SKATGTMGAKITFDNKEVTLNSEVIILAVKP-HIVPVAL-ND 195 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~------------~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL-~e 195 (303)
+..++|||||+|.||. .++..++.. .+.....++....+..++++.||+|++++|- .....++ ++
T Consensus 47 L~gktvgIiG~G~IG~-~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~ 125 (193)
T d1mx3a1 47 IRGETLGIIGLGRVGQ-AVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDF 125 (193)
T ss_dssp CTTCEEEEECCSHHHH-HHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHH
T ss_pred eeCceEEEeccccccc-cceeeeeccccceeeccCcccccchhhhccccccchhhccccCCEEEEeecccccchhhhhHH
Confidence 4578899999999999 566553211 1122344666667889999999999999983 2333333 23
Q ss_pred hccccCCCCEEEEecCCC--cHHHHHhhCC
Q psy6714 196 IKPVFNESNLLISVAGGV--PIKNMEQALP 223 (303)
Q Consensus 196 I~~~L~~g~IVVSiaaGV--~ie~L~~~l~ 223 (303)
....++++.++|.+.=|- +.+.|.+.+.
T Consensus 126 ~l~~mk~~a~lIN~sRG~ivde~aL~~aL~ 155 (193)
T d1mx3a1 126 TVKQMRQGAFLVNTARGGLVDEKALAQALK 155 (193)
T ss_dssp HHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred HHhccCCCCeEEecCCceEEcHHHHHHHHH
Confidence 334577889999887443 4456666664
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=97.67 E-value=5.2e-05 Score=61.64 Aligned_cols=87 Identities=5% Similarity=-0.023 Sum_probs=55.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh------------cH----HHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHh
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI------------VS----KATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r------------~~----e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~e 195 (303)
+|||||||+|.||.......++. .. +..+++|+...++.++++++.|+|++|+|+..-.+++..
T Consensus 1 Kiri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~~~~~~ 80 (164)
T d1tlta1 1 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVST 80 (164)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhccccccc
Confidence 47999999999997322322211 11 122356777777778888999999999998877777665
Q ss_pred hccccCCCCEEEEec-CCCcHHHHHhh
Q psy6714 196 IKPVFNESNLLISVA-GGVPIKNMEQA 221 (303)
Q Consensus 196 I~~~L~~g~IVVSia-aGV~ie~L~~~ 221 (303)
... .++-|+.-- -+.+.+++.++
T Consensus 81 al~---~gk~V~~EKPla~~~~e~~~l 104 (164)
T d1tlta1 81 LLN---AGVHVCVDKPLAENLRDAERL 104 (164)
T ss_dssp HHH---TTCEEEEESSSCSSHHHHHHH
T ss_pred ccc---ccceeeccccccCCHHHHHHH
Confidence 443 444444221 23455555554
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=97.52 E-value=6.1e-05 Score=63.40 Aligned_cols=94 Identities=11% Similarity=0.146 Sum_probs=64.2
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhc-------------HHHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH-H
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIV-------------SKATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL-N 194 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~-------------~e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL-~ 194 (303)
+..++|||||+|.+|. .++..++.. .......++....+..+++++||+|++++| ......++ .
T Consensus 42 l~~~~vgiiG~G~IG~-~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~ 120 (188)
T d2naca1 42 LEAMHVGTVAAGRIGL-AVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIND 120 (188)
T ss_dssp CTTCEEEEECCSHHHH-HHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSH
T ss_pred ccccceeeccccccch-hhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccchhhhHH
Confidence 4567899999999999 566553211 122345567777888999999999999998 33334444 2
Q ss_pred hhccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 195 DIKPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
+....++++.++|.+.=| |+.+.|.+.+.+
T Consensus 121 ~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~ 152 (188)
T d2naca1 121 ETLKLFKRGAYIVNTARGKLCDRDAVARALES 152 (188)
T ss_dssp HHHTTSCTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred HHHHhCCCCCEEEecCchhhhhHHHHHHHHhC
Confidence 344457789999987744 345667776653
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.48 E-value=4.1e-05 Score=63.12 Aligned_cols=74 Identities=9% Similarity=0.002 Sum_probs=50.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcH------------HHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccc
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVS------------KATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPV 199 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~------------e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~ 199 (303)
++||||||+|.||. .++..++... +.....++....+..+..++.|+|++|+|+....+++...
T Consensus 3 kirvgiiG~G~ig~-~~~~~l~~~~~~elvav~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~~a~~a--- 78 (170)
T d1f06a1 3 NIRVAIVGYGNLGR-SVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATDIPEQAPK--- 78 (170)
T ss_dssp CEEEEEECCSHHHH-HHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHHHH---
T ss_pred cceEEEECChHHHH-HHHHHHHhCCCcEEEEEEecccccccccccccchhhhhhccccceEEEeCCCcccHHHHHHH---
Confidence 47899999999998 5665554322 1122334444556666778999999999998877776553
Q ss_pred cCCCCEEEEe
Q psy6714 200 FNESNLLISV 209 (303)
Q Consensus 200 L~~g~IVVSi 209 (303)
+..|+-+|.+
T Consensus 79 L~aG~~vv~~ 88 (170)
T d1f06a1 79 FAQFACTVDT 88 (170)
T ss_dssp HTTTSEEECC
T ss_pred HHCCCcEEEe
Confidence 4466666643
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.48 E-value=0.00054 Score=56.29 Aligned_cols=85 Identities=4% Similarity=0.065 Sum_probs=52.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHh------------hcHHH----HhhCC----CeEecChHHhhc--CCCEEEEeeCCccH
Q psy6714 132 RSDKQIAGTTERGPGALIASLN------------IVSKA----TGTMG----AKITFDNKEVTL--NSEVIILAVKPHIV 189 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~------------r~~e~----l~e~G----v~v~~d~~eav~--~ADIVILAVpP~~v 189 (303)
++||||||+|.||. ..+..++ ...++ ..+++ .++..|.+++++ +.|+|++|+|+..-
T Consensus 1 kiki~iIG~G~~g~-~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h 79 (184)
T d1ydwa1 1 QIRIGVMGCADIAR-KVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLH 79 (184)
T ss_dssp CEEEEEESCCTTHH-HHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGH
T ss_pred CeEEEEEcCCHHHH-HHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhh
Confidence 47899999999998 4444322 11122 23444 356788888874 57999999998877
Q ss_pred HHHHHhhccccCCCCEEEEecC--CCcHHHHHhh
Q psy6714 190 PVALNDIKPVFNESNLLISVAG--GVPIKNMEQA 221 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSiaa--GV~ie~L~~~ 221 (303)
.+++..+.. .++-|+ +-. +.+.+.++++
T Consensus 80 ~~~~~~~l~---~g~~v~-~EKP~~~~~~e~~~l 109 (184)
T d1ydwa1 80 VEWAIKAAE---KGKHIL-LEKPVAMNVTEFDKI 109 (184)
T ss_dssp HHHHHHHHT---TTCEEE-ECSSCSSSHHHHHHH
T ss_pred cchhhhhhh---ccceee-cccccccCHHHHHHH
Confidence 777665443 444444 222 3455555544
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=6.1e-05 Score=63.37 Aligned_cols=94 Identities=18% Similarity=0.129 Sum_probs=60.0
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcH---------HHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH-Hhhcc
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIVS---------KATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL-NDIKP 198 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~~---------e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL-~eI~~ 198 (303)
+..++|||||+|.||. .++..++... ......+.....+..++++.||+|++++| ......++ ++...
T Consensus 42 l~~~~vgiiG~G~IG~-~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~ 120 (188)
T d1sc6a1 42 ARGKKLGIIGYGHIGT-QLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEIS 120 (188)
T ss_dssp STTCEEEEECCSHHHH-HHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHH
T ss_pred ccceEEEEeecccchh-hhhhhcccccceEeeccccccchhhhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHh
Confidence 4578899999999999 5665432211 00111223334577899999999999997 44333333 23344
Q ss_pred ccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 199 VFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 199 ~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
.++++.++|.+.=| |+.+.|.+.+..
T Consensus 121 ~mk~~a~lIN~aRG~lvde~aL~~aL~~ 148 (188)
T d1sc6a1 121 LMKPGSLLINASRGTVVDIPALADALAS 148 (188)
T ss_dssp HSCTTEEEEECSCSSSBCHHHHHHHHHT
T ss_pred hCCCCCEEEEcCcHHhhhhHHHHHHHHc
Confidence 56688999988743 355677776653
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=97.38 E-value=5.9e-05 Score=64.00 Aligned_cols=93 Identities=15% Similarity=0.088 Sum_probs=59.7
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhc-------------HHHHhhCCCeEecChHHhhcCCCEEEEeeCC-ccHHHHH-H
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIV-------------SKATGTMGAKITFDNKEVTLNSEVIILAVKP-HIVPVAL-N 194 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~-------------~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL-~ 194 (303)
+..++|||||+|.+|. .++..++.. .......+.....+..++++.||+|++++|- .....++ +
T Consensus 45 l~g~tvgIiG~G~IG~-~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~ 123 (191)
T d1gdha1 45 LDNKTLGIYGFGSIGQ-ALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNK 123 (191)
T ss_dssp CTTCEEEEECCSHHHH-HHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSH
T ss_pred ecccceEEeecccchH-HHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecH
Confidence 4578899999999999 465442211 1112233444456788999999999999983 3344444 2
Q ss_pred hhccccCCCCEEEEecCC--CcHHHHHhhCC
Q psy6714 195 DIKPVFNESNLLISVAGG--VPIKNMEQALP 223 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaG--V~ie~L~~~l~ 223 (303)
+....++++.++|.+.=| |+.+.|.+.+.
T Consensus 124 ~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~ 154 (191)
T d1gdha1 124 ATIKSLPQGAIVVNTARGDLVDNELVVAALE 154 (191)
T ss_dssp HHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHhhCcCCccEEEecCCccchhhHHHHHHHH
Confidence 334457789999987733 34456666554
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=97.37 E-value=6.3e-05 Score=64.09 Aligned_cols=93 Identities=14% Similarity=0.088 Sum_probs=56.7
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhcH----------HHHhhCCCeEecChHHhhcCCCEEEEeeCC-ccHHHHH-Hhhc
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIVS----------KATGTMGAKITFDNKEVTLNSEVIILAVKP-HIVPVAL-NDIK 197 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~~----------e~l~e~Gv~v~~d~~eav~~ADIVILAVpP-~~v~~VL-~eI~ 197 (303)
+..++|||||+|.||. .++..++-.. ......++. ..+..++++.||+|++++|- .....++ ++..
T Consensus 43 l~~ktvgIiG~G~IG~-~va~~l~~fg~~v~~~d~~~~~~~~~~~~-~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l 120 (199)
T d1dxya1 43 LGQQTVGVMGTGHIGQ-VAIKLFKGFGAKVIAYDPYPMKGDHPDFD-YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAF 120 (199)
T ss_dssp GGGSEEEEECCSHHHH-HHHHHHHHTTCEEEEECSSCCSSCCTTCE-ECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHH
T ss_pred ccceeeeeeecccccc-cccccccccceeeeccCCccchhhhcchh-HHHHHHHHHhcccceeeecccccccccccHHHh
Confidence 4467899999999999 4654432111 001111222 35678889999999999973 3333333 2233
Q ss_pred cccCCCCEEEEecCCC--cHHHHHhhCCC
Q psy6714 198 PVFNESNLLISVAGGV--PIKNMEQALPK 224 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV--~ie~L~~~l~~ 224 (303)
..++++.++|.+.=|- +.+.|.+.+..
T Consensus 121 ~~mk~~a~lIN~aRG~vvde~aL~~aL~~ 149 (199)
T d1dxya1 121 NLMKPGAIVINTARPNLIDTQAMLSNLKS 149 (199)
T ss_dssp HHSCTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred hccCCceEEEecccHhhhhhHHHHHHHhc
Confidence 3466888999887433 34567666653
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=97.35 E-value=2.5e-05 Score=66.82 Aligned_cols=92 Identities=12% Similarity=0.119 Sum_probs=57.1
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhhc----------H-HHHhhCCCeEecChHHhhcCCCEEEEeeCCc-cHHHHH-Hhh
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNIV----------S-KATGTMGAKITFDNKEVTLNSEVIILAVKPH-IVPVAL-NDI 196 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r~----------~-e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~-~v~~VL-~eI 196 (303)
+..++|||||+|.||. .++..++.. . ......++. ..+..+++++||+|++++|-. ....++ ++.
T Consensus 41 l~gk~vgIiG~G~IG~-~va~~l~~fg~~V~~~d~~~~~~~~~~~~~-~~~l~~~l~~sDii~~~~plt~~T~~li~~~~ 118 (197)
T d1j4aa1 41 VRDQVVGVVGTGHIGQ-VFMQIMEGFGAKVITYDIFRNPELEKKGYY-VDSLDDLYKQADVISLHVPDVPANVHMINDES 118 (197)
T ss_dssp GGGSEEEEECCSHHHH-HHHHHHHHTTCEEEEECSSCCHHHHHTTCB-CSCHHHHHHHCSEEEECSCCCGGGTTCBSHHH
T ss_pred ccCCeEEEecccccch-hHHHhHhhhcccccccCcccccccccceee-eccccccccccccccccCCccccccccccHHH
Confidence 4567899999999999 566543211 1 111222333 356788999999999999832 233333 222
Q ss_pred ccccCCCCEEEEecCCC--cHHHHHhhCC
Q psy6714 197 KPVFNESNLLISVAGGV--PIKNMEQALP 223 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaGV--~ie~L~~~l~ 223 (303)
...++++.++|.+.=|- +.+.|.+.+.
T Consensus 119 l~~mk~~a~lIN~sRG~ivde~aL~~aL~ 147 (197)
T d1j4aa1 119 IAKMKQDVVIVNVSRGPLVDTDAVIRGLD 147 (197)
T ss_dssp HHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HhhhCCccEEEecCchhhhhhHHHHHHHh
Confidence 33466888999876333 4456666664
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=97.28 E-value=0.00038 Score=56.41 Aligned_cols=81 Identities=11% Similarity=0.213 Sum_probs=46.5
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcHHHH-------h----hCC-C-eEecChHHhhcCCCEEEEeeC-
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVSKAT-------G----TMG-A-KITFDNKEVTLNSEVIILAVK- 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~e~l-------~----e~G-v-~v~~d~~eav~~ADIVILAVp- 185 (303)
+|||+|||+|++|. .++..+ +...+++ . ..+ . ....|. +.+++||+||++.-
T Consensus 5 ~~KI~IIGaG~VG~-~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~-~~~~~adivvitag~ 82 (146)
T d1ez4a1 5 HQKVVLVGDGAVGS-SYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY-SDCKDADLVVITAGA 82 (146)
T ss_dssp BCEEEEECCSHHHH-HHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG-GGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHH-HHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH-HHhccccEEEEeccc
Confidence 78999999999998 455331 1111111 0 112 1 233444 45789999999872
Q ss_pred ---Cc------------cHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 ---PH------------IVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 ---P~------------~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
|. .+.++.++|..+ .++.+||-..++++.
T Consensus 83 ~~~~g~~r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvtNPvdv 126 (146)
T d1ez4a1 83 PQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPVDI 126 (146)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeCCccHH
Confidence 21 123444555554 356677767777764
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.26 E-value=0.00022 Score=58.57 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=47.7
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhc------------H-----HHHhhCCCeEecChHH-h-----hcCCCEEEEeeCCc
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNIV------------S-----KATGTMGAKITFDNKE-V-----TLNSEVIILAVKPH 187 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r~------------~-----e~l~e~Gv~v~~d~~e-a-----v~~ADIVILAVpP~ 187 (303)
+++||||||+|.+|+..+...++.. . ...+++|+....+..+ + ..+.|+||+|+|..
T Consensus 3 kkirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag 82 (157)
T d1nvmb1 3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSAS 82 (157)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCch
Confidence 3689999999999985454443211 1 2345678876554322 2 23689999999854
Q ss_pred -cHHHHHHhhccccCCCCEEEEecC
Q psy6714 188 -IVPVALNDIKPVFNESNLLISVAG 211 (303)
Q Consensus 188 -~v~~VL~eI~~~L~~g~IVVSiaa 211 (303)
++..... ++ ..+.|+.||+...
T Consensus 83 ~h~~~~~~-~~-aa~~G~~VID~s~ 105 (157)
T d1nvmb1 83 AHVQNEAL-LR-QAKPGIRLIDLTP 105 (157)
T ss_dssp HHHHHHHH-HH-HHCTTCEEEECST
T ss_pred hHHHhHHH-HH-HHHcCCEEEEccc
Confidence 3432211 11 1347888887654
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.26 E-value=0.00016 Score=60.67 Aligned_cols=92 Identities=9% Similarity=0.162 Sum_probs=61.1
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhh------------cHHHHhhCCCeEecChHHhhcCCCEEEEeeC-CccHHHHH-Hhh
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNI------------VSKATGTMGAKITFDNKEVTLNSEVIILAVK-PHIVPVAL-NDI 196 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r------------~~e~l~e~Gv~v~~d~~eav~~ADIVILAVp-P~~v~~VL-~eI 196 (303)
..+++||||+|.+|. .++..++. ..+.....++.. .+..+++++||+|++++| -.....++ ++.
T Consensus 43 ~~k~vgiiG~G~IG~-~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~-~~l~ell~~sDiv~~~~Plt~~T~~lin~~~ 120 (184)
T d1ygya1 43 FGKTVGVVGLGRIGQ-LVAQRIAAFGAYVVAYDPYVSPARAAQLGIEL-LSLDDLLARADFISVHLPKTPETAGLIDKEA 120 (184)
T ss_dssp TTCEEEEECCSHHHH-HHHHHHHTTTCEEEEECTTSCHHHHHHHTCEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHH
T ss_pred cceeeeeccccchhH-HHHHHhhhccceEEeecCCCChhHHhhcCcee-ccHHHHHhhCCEEEEcCCCCchhhhhhhHHH
Confidence 467899999999999 45544321 122333455554 577889999999999998 34444444 233
Q ss_pred ccccCCCCEEEEecCC--CcHHHHHhhCCC
Q psy6714 197 KPVFNESNLLISVAGG--VPIKNMEQALPK 224 (303)
Q Consensus 197 ~~~L~~g~IVVSiaaG--V~ie~L~~~l~~ 224 (303)
...++++.++|.+.=| |+.+.|.+.+..
T Consensus 121 l~~mk~~a~lIN~sRG~iVde~aL~~aL~~ 150 (184)
T d1ygya1 121 LAKTKPGVIIVNAARGGLVDEAALADAITG 150 (184)
T ss_dssp HTTSCTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred HhhhCCCceEEEecchhhhhhHHHHHHHhc
Confidence 4456788899988744 344667776653
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.20 E-value=0.00054 Score=54.79 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=47.0
Q ss_pred CcEEEEcCChhhHHHHHHHH------------hhcHHH-------H------hhCCCeEe-cChHHhhcCCCEEEEeeC-
Q psy6714 133 SDKQIAGTTERGPGALIASL------------NIVSKA-------T------GTMGAKIT-FDNKEVTLNSEVIILAVK- 185 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al------------~r~~e~-------l------~e~Gv~v~-~d~~eav~~ADIVILAVp- 185 (303)
|||+|||+|++|.. ++..+ +...++ + .....++. .+..+.+++||+||++.-
T Consensus 1 mKI~IIGaG~VG~~-la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~ 79 (142)
T d1guza1 1 MKITVIGAGNVGAT-TAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGL 79 (142)
T ss_dssp CEEEEECCSHHHHH-HHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSC
T ss_pred CEEEEECcCHHHHH-HHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEec
Confidence 89999999999984 54331 111100 0 11223332 344567899999999962
Q ss_pred ---Ccc------------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 ---PHI------------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 ---P~~------------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
|.. +.++++.|..+- ++.+++-..++++.
T Consensus 80 ~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPvd~ 123 (142)
T d1guza1 80 PRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSNPLDI 123 (142)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCSSHHH
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHhhccC-CCeEEEEecCChHH
Confidence 211 234445555543 56666667777665
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.19 E-value=0.0006 Score=54.63 Aligned_cols=81 Identities=20% Similarity=0.210 Sum_probs=47.5
Q ss_pred CcEEEEcCChhhHHHHHHHH------------hhcHHHH----------h--hCCCeEecChHHhhcCCCEEEEeeC---
Q psy6714 133 SDKQIAGTTERGPGALIASL------------NIVSKAT----------G--TMGAKITFDNKEVTLNSEVIILAVK--- 185 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al------------~r~~e~l----------~--e~Gv~v~~d~~eav~~ADIVILAVp--- 185 (303)
|||+|||.|++|.. ++..+ +...+++ . .....+..+..+.+++||+||++.-
T Consensus 1 mKI~IIGaG~VG~~-~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~ 79 (140)
T d1a5za1 1 MKIGIVGLGRVGSS-TAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQ 79 (140)
T ss_dssp CEEEEECCSHHHHH-HHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCC
T ss_pred CEEEEECcCHHHHH-HHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEeccccc
Confidence 89999999999984 44331 1111111 0 1123444455567899999999972
Q ss_pred -Ccc------------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 -PHI------------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 -P~~------------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
+.. +.++++.|.++- ++.+|+-..++++.
T Consensus 80 ~~g~~r~dl~~~N~~I~~~i~~~i~~~~-p~aivivvtNPvd~ 121 (140)
T d1a5za1 80 KPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVDV 121 (140)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHH
T ss_pred CCCcchhhhhccccchHHHHHHHHHhcC-CCcEEEEeCCcHHH
Confidence 222 223334455433 56677767777765
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.18 E-value=0.00026 Score=57.84 Aligned_cols=79 Identities=10% Similarity=0.065 Sum_probs=49.0
Q ss_pred CcEEEEc-CChhhHHHHHHH-Hhh--cHH-HH------------hhCC----CeEecChHHhhcCCCEEEEeeCCccHHH
Q psy6714 133 SDKQIAG-TTERGPGALIAS-LNI--VSK-AT------------GTMG----AKITFDNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 133 mkIgIIG-lG~MG~~~La~a-l~r--~~e-~l------------~e~G----v~v~~d~~eav~~ADIVILAVpP~~v~~ 191 (303)
||||||| +|..|. .|... ++. ... .+ ...+ ........+.++++|+||+|+|.....+
T Consensus 1 mKVaIiGATGyvG~-eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~s~~ 79 (147)
T d1mb4a1 1 MRVGLVGWRGMVGS-VLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYTEK 79 (147)
T ss_dssp CEEEEESCSSHHHH-HHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHHHH
T ss_pred CEEEEECCccHHHH-HHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchHHHH
Confidence 8999998 899998 56543 221 110 00 0011 1112233456789999999999988888
Q ss_pred HHHhhccccCCCCEEEEecCCC
Q psy6714 192 ALNDIKPVFNESNLLISVAGGV 213 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSiaaGV 213 (303)
+...+... ..+.+||+.++..
T Consensus 80 ~~~~l~~~-g~~~~VIDlSsdf 100 (147)
T d1mb4a1 80 VYPALRQA-GWKGYWIDAASTL 100 (147)
T ss_dssp HHHHHHHT-TCCSEEEESSSTT
T ss_pred HhHHHHHc-CCceEEEeCCccc
Confidence 88776542 2335788887644
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.09 E-value=0.0016 Score=53.54 Aligned_cols=63 Identities=8% Similarity=0.181 Sum_probs=42.9
Q ss_pred EecChHHhhcCCCEEEEeeCCcc------------------------------------HHHHHHhhccccCCCCEEEEe
Q psy6714 166 ITFDNKEVTLNSEVIILAVKPHI------------------------------------VPVALNDIKPVFNESNLLISV 209 (303)
Q Consensus 166 v~~d~~eav~~ADIVILAVpP~~------------------------------------v~~VL~eI~~~L~~g~IVVSi 209 (303)
.++|..+++++||+||++..... +.++++.+..+ .++.++|..
T Consensus 67 ~~td~~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~-~pda~~i~v 145 (169)
T d1s6ya1 67 LTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEEL-CPDAWLINF 145 (169)
T ss_dssp EESCHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEC
T ss_pred ecCCchhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhc-CCCeEEEEe
Confidence 45677888999999999995322 45666666664 477788888
Q ss_pred cCCCcH--HHHHhhCCCCCceEE
Q psy6714 210 AGGVPI--KNMEQALPKNSRIIR 230 (303)
Q Consensus 210 aaGV~i--e~L~~~l~~~~~VVr 230 (303)
+++++. ..+.+.+|. .+++.
T Consensus 146 tNPvdv~t~~~~k~~p~-~kviG 167 (169)
T d1s6ya1 146 TNPAGMVTEAVLRYTKQ-EKVVG 167 (169)
T ss_dssp SSSHHHHHHHHHHHCCC-CCEEE
T ss_pred CChHHHHHHHHHHHCCC-CCEEe
Confidence 888775 345566653 35543
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=97.02 E-value=0.00098 Score=53.90 Aligned_cols=86 Identities=8% Similarity=0.054 Sum_probs=52.2
Q ss_pred CcEEEEcCChhhHHHHHHHHh-----------hcHHH----HhhCCCe-EecChHHhhc-CCCEEEEeeCCccHHHHHHh
Q psy6714 133 SDKQIAGTTERGPGALIASLN-----------IVSKA----TGTMGAK-ITFDNKEVTL-NSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~-----------r~~e~----l~e~Gv~-v~~d~~eav~-~ADIVILAVpP~~v~~VL~e 195 (303)
|||||||+|.||.......++ ...+. ..++++. ...|.+++++ +.|+|++|+|+..-.+++..
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~~~~~ 81 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAAF 81 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccccccccccc
Confidence 789999999999733332322 11122 2345653 4566677665 67999999999888888766
Q ss_pred hccccCCCC-EEEEecCCCcHHHHHhh
Q psy6714 196 IKPVFNESN-LLISVAGGVPIKNMEQA 221 (303)
Q Consensus 196 I~~~L~~g~-IVVSiaaGV~ie~L~~~ 221 (303)
... .|+ +++-==-+.+.+.++++
T Consensus 82 al~---~gk~V~~EKP~~~~~~e~~~l 105 (167)
T d1xeaa1 82 FLH---LGIPTFVDKPLAASAQECENL 105 (167)
T ss_dssp HHH---TTCCEEEESCSCSSHHHHHHH
T ss_pred ccc---cccccccCCCCcCCHHHHHHH
Confidence 544 233 44321124555555554
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=96.97 E-value=0.0016 Score=52.97 Aligned_cols=82 Identities=13% Similarity=0.217 Sum_probs=50.4
Q ss_pred CCcEEEEcCChhhHHHHHHHH--h---------hcHH----------HHh-hCCC----eEecChHHhhcCCCEEEEeeC
Q psy6714 132 RSDKQIAGTTERGPGALIASL--N---------IVSK----------ATG-TMGA----KITFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al--~---------r~~e----------~l~-e~Gv----~v~~d~~eav~~ADIVILAVp 185 (303)
++||+|||+|.+|. .++..+ + ...+ +.. ..+. ....+.++++++||+|+++.-
T Consensus 7 ~~KI~IIGaG~VG~-~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag 85 (154)
T d1pzga1 7 RKKVAMIGSGMIGG-TMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG 85 (154)
T ss_dssp CCEEEEECCSHHHH-HHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred CCcEEEECCCHHHH-HHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence 68999999999998 455431 1 0100 111 1121 234556678899999999872
Q ss_pred ----Cc-----------------cHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 ----PH-----------------IVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 ----P~-----------------~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
|. .+.++++++..+- ++.+|+-.+++++.
T Consensus 86 ~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~-p~aiviivsNPvd~ 135 (154)
T d1pzga1 86 LTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDC 135 (154)
T ss_dssp CSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHH
T ss_pred cccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcC-CCcEEEEeCCcHHH
Confidence 21 2455556666544 56677778888765
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.96 E-value=0.00083 Score=54.26 Aligned_cols=83 Identities=8% Similarity=0.101 Sum_probs=50.1
Q ss_pred CCCcEEEEcCChhhHHHHHHHH------------hhcHHH-------Hh------hCCCeEecChHHhhcCCCEEEEeeC
Q psy6714 131 NRSDKQIAGTTERGPGALIASL------------NIVSKA-------TG------TMGAKITFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al------------~r~~e~-------l~------e~Gv~v~~d~~eav~~ADIVILAVp 185 (303)
+..||+|||+|.+|. .++..+ +...++ +. .....+..+..+.+++||+||++.-
T Consensus 5 ~~~KI~IiGaG~vG~-~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag 83 (148)
T d1ldna1 5 GGARVVVIGAGFVGA-SYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG 83 (148)
T ss_dssp TSCEEEEECCSHHHH-HHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred CCCeEEEECcCHHHH-HHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence 467999999999998 454331 111111 11 1234455555677899999999873
Q ss_pred -C---cc------------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 -P---HI------------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 -P---~~------------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
+ .. ++++.+.|+.+- ++.+||-+.+++++
T Consensus 84 ~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~~ivvtNPvd~ 128 (148)
T d1ldna1 84 ANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPVDI 128 (148)
T ss_dssp CCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHHH
T ss_pred cccccCcchhHHHHHHHHHHHHHHHHHHhhC-CCceEEEecCccHH
Confidence 1 11 234445565543 56677767777775
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=96.95 E-value=0.0015 Score=53.92 Aligned_cols=63 Identities=14% Similarity=0.206 Sum_probs=42.1
Q ss_pred eEecChHHhhcCCCEEEEeeCC------------------------------------ccHHHHHHhhccccCCCCEEEE
Q psy6714 165 KITFDNKEVTLNSEVIILAVKP------------------------------------HIVPVALNDIKPVFNESNLLIS 208 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVpP------------------------------------~~v~~VL~eI~~~L~~g~IVVS 208 (303)
..++|..+++++||+||++.-+ ..+.++++.|..+- ++.+++-
T Consensus 66 ~~~~d~~eal~~AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~-P~A~li~ 144 (167)
T d1u8xx1 66 AATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLN 144 (167)
T ss_dssp EEESCHHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEE
T ss_pred EecCChhhccCCCCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhC-CCeEEEE
Confidence 4567888999999999999854 22445555666543 6777777
Q ss_pred ecCCCcH--HHHHhhCCCCCceE
Q psy6714 209 VAGGVPI--KNMEQALPKNSRII 229 (303)
Q Consensus 209 iaaGV~i--e~L~~~l~~~~~VV 229 (303)
.+++++. ..+.+.+|. .+|+
T Consensus 145 ~TNPvdv~t~~~~k~~P~-~rVI 166 (167)
T d1u8xx1 145 YSNPAAIVAEATRRLRPN-SKIL 166 (167)
T ss_dssp CCSCHHHHHHHHHHHSTT-CCEE
T ss_pred eCCHHHHHHHHHHHHCCc-cccc
Confidence 8887765 345566653 3443
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.00097 Score=54.04 Aligned_cols=107 Identities=13% Similarity=0.106 Sum_probs=60.6
Q ss_pred CCcEEEEc-CChhhHHHHHH-HHhhc--HH-H---------------HhhCCC-eEecChHHhhcCCCEEEEeeCCccHH
Q psy6714 132 RSDKQIAG-TTERGPGALIA-SLNIV--SK-A---------------TGTMGA-KITFDNKEVTLNSEVIILAVKPHIVP 190 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~-al~r~--~e-~---------------l~e~Gv-~v~~d~~eav~~ADIVILAVpP~~v~ 190 (303)
|+|||||| +|.+|.- |.. .+.+. .. . ...... .......+.++++|++|+|++.....
T Consensus 1 MkkVaIvGATG~VGqe-li~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s~ 79 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSV-LMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTN 79 (146)
T ss_dssp CCEEEEESTTSHHHHH-HHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHHH
T ss_pred CcEEEEECCccHHHHH-HHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHHH
Confidence 56899998 7999994 543 33221 10 0 000111 11122334578999999999988888
Q ss_pred HHHHhhccccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCcHH-----hhhCCcEEEEeC
Q psy6714 191 VALNDIKPVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNTPA-----LVRQGASVFVRG 249 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~p~-----~v~~G~til~~g 249 (303)
++...+... +.+.+||+..+..-.+ ..+...+|.+.. ...+|.-.+.++
T Consensus 80 ~~~~~~~~~-g~~~~VID~Ss~fR~~---------~dvplviPEVN~~~i~~~~~~g~~~~ig~ 133 (146)
T d1t4ba1 80 EIYPKLRES-GWQGYWIDAASSLRMK---------DDAIIILDPVNQDVITDGLNNGIRTFVGG 133 (146)
T ss_dssp HHHHHHHHT-TCCCEEEECSSTTTTC---------TTEEEECHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HhhHHHHhc-CCCeecccCCcccccC---------CCCcEECCCcCHHHHHHHHHcCCceEEec
Confidence 888776542 2335788776533221 245566665542 234555555554
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.89 E-value=0.001 Score=53.46 Aligned_cols=82 Identities=13% Similarity=0.167 Sum_probs=47.3
Q ss_pred CcEEEEcCChhhHHHHHHHH------------hhcHHH-------H---h-hCC--CeEe-cChHHhhcCCCEEEEeeC-
Q psy6714 133 SDKQIAGTTERGPGALIASL------------NIVSKA-------T---G-TMG--AKIT-FDNKEVTLNSEVIILAVK- 185 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al------------~r~~e~-------l---~-e~G--v~v~-~d~~eav~~ADIVILAVp- 185 (303)
|||+|||.|++|. .++..+ +...++ + . ..+ .++. .+..+.+++||+||++.-
T Consensus 1 MKI~IIGaG~VG~-~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvitag~ 79 (142)
T d1ojua1 1 MKLGFVGAGRVGS-TSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGL 79 (142)
T ss_dssp CEEEEECCSHHHH-HHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCC
T ss_pred CEEEEECcCHHHH-HHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEeccc
Confidence 8999999999999 455431 111111 1 1 111 1222 223467899999999873
Q ss_pred Cc---------------cHHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 186 PH---------------IVPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 186 P~---------------~v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
|. .+.++.+.+.++ .++.+++-..++++.-
T Consensus 80 ~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~p~aivivvtNPvD~~ 124 (142)
T d1ojua1 80 ARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPMDVM 124 (142)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSHHHH
T ss_pred cCCCCCchHHHHHHhhHHHHHHHHHHHhh-CCCcEEEEecCChHHH
Confidence 11 122333445543 3567888788887653
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=96.88 E-value=0.0015 Score=55.74 Aligned_cols=87 Identities=5% Similarity=0.047 Sum_probs=51.9
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcHHH----HhhCCCe-----EecChHHhhc--CCCEEEEeeCCcc
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVSKA----TGTMGAK-----ITFDNKEVTL--NSEVIILAVKPHI 188 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~e~----l~e~Gv~-----v~~d~~eav~--~ADIVILAVpP~~ 188 (303)
..||||||+|.||...+...+ +++.++ .+++|+. ...|..++++ +.|+|++|+|++.
T Consensus 33 ~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~~ 112 (221)
T d1h6da1 33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSL 112 (221)
T ss_dssp CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGG
T ss_pred CEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchhh
Confidence 458999999999973343332 122222 2345552 3467778775 5899999999887
Q ss_pred HHHHHHhhccccCCCCEEEEec-CCCcHHHHHhh
Q psy6714 189 VPVALNDIKPVFNESNLLISVA-GGVPIKNMEQA 221 (303)
Q Consensus 189 v~~VL~eI~~~L~~g~IVVSia-aGV~ie~L~~~ 221 (303)
-.+++..... .++-|+.-- -+.+.+.+.++
T Consensus 113 H~~~~~~al~---~gk~v~~EKPla~~~~e~~~l 143 (221)
T d1h6da1 113 HAEFAIRAFK---AGKHVMCEKPMATSVADCQRM 143 (221)
T ss_dssp HHHHHHHHHH---TTCEEEECSSCCSSHHHHHHH
T ss_pred hhhHHHHhhh---cchhhhcCCCccCCHHHHHHH
Confidence 7777655433 445455321 23455555444
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=96.87 E-value=0.002 Score=53.18 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=18.5
Q ss_pred eEecChHHhhcCCCEEEEeeCCc
Q psy6714 165 KITFDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVpP~ 187 (303)
..++|..+++++||+||.++..-
T Consensus 65 ~~~td~~eaL~dad~Vv~~~~~g 87 (171)
T d1obba1 65 EKTMNLDDVIIDADFVINTAMVG 87 (171)
T ss_dssp EEESCHHHHHTTCSEEEECCCTT
T ss_pred EEeCChhhcccCCCeEeeecccc
Confidence 34578889999999999997543
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=96.80 E-value=0.0019 Score=52.65 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=34.3
Q ss_pred CcEEEEcCChhhHHHHHHHH---------------hhcHHHH----------hhC--CCeEecChHHhhcCCCEEEEeeC
Q psy6714 133 SDKQIAGTTERGPGALIASL---------------NIVSKAT----------GTM--GAKITFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al---------------~r~~e~l----------~e~--Gv~v~~d~~eav~~ADIVILAVp 185 (303)
|||+|||.|..|.+.+...+ +.+.+++ ... .+.+..+..+.+++||+||++.-
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~ 80 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR 80 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence 89999999999974332211 1111111 112 23456777888999999999985
Q ss_pred C
Q psy6714 186 P 186 (303)
Q Consensus 186 P 186 (303)
.
T Consensus 81 ~ 81 (162)
T d1up7a1 81 P 81 (162)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=96.76 E-value=0.0017 Score=52.40 Aligned_cols=81 Identities=15% Similarity=0.233 Sum_probs=47.4
Q ss_pred CcEEEEcCChhhHHHHHHHH------------hhcHHH-------H----hhCC--CeEecChHHhhcCCCEEEEeeC-C
Q psy6714 133 SDKQIAGTTERGPGALIASL------------NIVSKA-------T----GTMG--AKITFDNKEVTLNSEVIILAVK-P 186 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al------------~r~~e~-------l----~e~G--v~v~~d~~eav~~ADIVILAVp-P 186 (303)
+||+|||+|.+|. .++..+ +...++ + ...+ ..+..+..+.+++||+||++.- +
T Consensus 2 kKI~IIGaG~VG~-~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~ 80 (146)
T d1hyha1 2 RKIGIIGLGNVGA-AVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNI 80 (146)
T ss_dssp CEEEEECCSHHHH-HHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCG
T ss_pred CeEEEECcCHHHH-HHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEecccc
Confidence 5899999999998 344321 111111 1 1122 2333444556899999999853 1
Q ss_pred c-------------------cHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 187 H-------------------IVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 187 ~-------------------~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
. .+.++.+.++.+ .++.+||-..++++.
T Consensus 81 ~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~-~p~aivivvtNPvD~ 127 (146)
T d1hyha1 81 KLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVISNPVDV 127 (146)
T ss_dssp GGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHHH
T ss_pred ccccccCCccHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCcHHH
Confidence 1 133444555543 367777778888775
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=96.71 E-value=0.0021 Score=52.62 Aligned_cols=87 Identities=8% Similarity=0.028 Sum_probs=53.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHh-------------hcHHHH----hhCCC-eEecChHHhhc--CCCEEEEeeCCccHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASLN-------------IVSKAT----GTMGA-KITFDNKEVTL--NSEVIILAVKPHIVPV 191 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~-------------r~~e~l----~e~Gv-~v~~d~~eav~--~ADIVILAVpP~~v~~ 191 (303)
++||||||+|.||.......++ ++.+++ ..+|. .+..+.+++++ +.|+|++|+|+..-.+
T Consensus 3 kirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~~ 82 (181)
T d1zh8a1 3 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLP 82 (181)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccccccc
Confidence 4689999999999742233321 112222 24565 46678888875 5799999999888777
Q ss_pred HHHhhccccCCCCEEEEec-CCCcHHHHHhh
Q psy6714 192 ALNDIKPVFNESNLLISVA-GGVPIKNMEQA 221 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSia-aGV~ie~L~~~ 221 (303)
++..+.. .++-|+.-- -+.+.+++.++
T Consensus 83 ~~~~al~---~gk~V~~EKPl~~~~~e~~~l 110 (181)
T d1zh8a1 83 FIEKALR---KGVHVICEKPISTDVETGKKV 110 (181)
T ss_dssp HHHHHHH---TTCEEEEESSSSSSHHHHHHH
T ss_pred ccccccc---cchhhhcCCCCcCCHHHHHHH
Confidence 7766543 344444322 23455554443
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.71 E-value=0.00089 Score=55.32 Aligned_cols=79 Identities=14% Similarity=0.211 Sum_probs=50.6
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhcHH-----------------HHh-----hCCC-----eEecChHHhhcCCCEEEEe
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIVSK-----------------ATG-----TMGA-----KITFDNKEVTLNSEVIILA 183 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~~e-----------------~l~-----e~Gv-----~v~~d~~eav~~ADIVILA 183 (303)
||||+||| +|-.|. .|.+.+...+. .+. -.|. ....+......++|+||+|
T Consensus 1 MikVaIiGATGyvG~-eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~a 79 (179)
T d2g17a1 1 MLNTLIVGASGYAGA-ELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLA 79 (179)
T ss_dssp CEEEEEETTTSHHHH-HHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEEC
T ss_pred CcEEEEECcccHHHH-HHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecc
Confidence 78999999 999998 56655432210 010 0011 1223334445789999999
Q ss_pred eCCccHHHHHHhhccccCCCCEEEEecCCCc
Q psy6714 184 VKPHIVPVALNDIKPVFNESNLLISVAGGVP 214 (303)
Q Consensus 184 VpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~ 214 (303)
+|.....+....+.. .+..||+..+..-
T Consensus 80 lp~~~s~~~~~~~~~---~~~~vIDlSadfR 107 (179)
T d2g17a1 80 TAHEVSHDLAPQFLQ---AGCVVFDLSGAFR 107 (179)
T ss_dssp SCHHHHHHHHHHHHH---TTCEEEECSSTTS
T ss_pred ccchhHHHHhhhhhh---cCceeeccccccc
Confidence 999888887766543 5677888776553
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.70 E-value=0.001 Score=55.57 Aligned_cols=129 Identities=16% Similarity=0.199 Sum_probs=71.7
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhcHH--------------HHh-----hCCC-eE-ecChHHhhcCCCEEEEeeCCccH
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIVSK--------------ATG-----TMGA-KI-TFDNKEVTLNSEVIILAVKPHIV 189 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~~e--------------~l~-----e~Gv-~v-~~d~~eav~~ADIVILAVpP~~v 189 (303)
||||||+| +|..|. .|.+.+.+.+. .+. ..+. .. ..+..++.+++|+||+|++....
T Consensus 1 MikVaIvGATGyvG~-eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s 79 (176)
T d1vkna1 1 MIRAGIIGATGYTGL-ELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS 79 (176)
T ss_dssp CEEEEEESTTSHHHH-HHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH
T ss_pred CeEEEEECCCcHHHH-HHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHH
Confidence 78999998 899998 56655433221 110 0111 11 23455666789999999998877
Q ss_pred HHHHHhhccccCCCCEEEEecCCCcH---HHHHhhCCCC------CceEEEecCcH-HhhhCCcEEEEeCCCCCH-HHHH
Q psy6714 190 PVALNDIKPVFNESNLLISVAGGVPI---KNMEQALPKN------SRIIRAMPNTP-ALVRQGASVFVRGSSASD-QDAQ 258 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSiaaGV~i---e~L~~~l~~~------~~VVr~mPn~p-~~v~~G~til~~g~~~~~-e~~e 258 (303)
.+.+.. . .+..||++.+..-. +.++++.+.. ...+..+|-+. ..+..+..+ ..+++.. ...-
T Consensus 80 ~~~~~~----~-~~~~VIDlSadfRl~~~~~y~~~Y~~~h~~~~~~~~~YGlpE~~r~~i~~~~~I--anPgC~~t~~~l 152 (176)
T d1vkna1 80 YDLVRE----L-KGVKIIDLGADFRFDDPGVYREWYGKELSGYENIKRVYGLPELHREEIKNAQVV--GNPGLVKGASGQ 152 (176)
T ss_dssp HHHHTT----C-CSCEEEESSSTTTCSSHHHHHHHHCCCCTTGGGCCEEECCHHHHHHHHTTCSEE--ECCCTTTTTHHH
T ss_pred HHHHHh----h-ccceEEecCccccccchhhHHHhhccccccccccceeecCcHHhHHHHhcCCEE--EccCcHHHHHHH
Confidence 666543 2 46678888876643 3344443321 13455666543 233333322 2333333 2334
Q ss_pred HHHHHHHhcC
Q psy6714 259 TVINLFKSVG 268 (303)
Q Consensus 259 ~V~~Lfs~iG 268 (303)
.+..|....|
T Consensus 153 aL~PL~~~~g 162 (176)
T d1vkna1 153 AVQNMNIMFG 162 (176)
T ss_dssp HHHHHHHHTT
T ss_pred HHhhHHHhcC
Confidence 4666656655
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=96.64 E-value=0.0039 Score=49.76 Aligned_cols=81 Identities=21% Similarity=0.299 Sum_probs=45.9
Q ss_pred CCcEEEEcCChhhHHHHHHHH--h---------hcHHH-------------HhhCCCeE--ecChHHhhcCCCEEEEeeC
Q psy6714 132 RSDKQIAGTTERGPGALIASL--N---------IVSKA-------------TGTMGAKI--TFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al--~---------r~~e~-------------l~e~Gv~v--~~d~~eav~~ADIVILAVp 185 (303)
++||+|||+|.+|. .++..+ + ...+. +......+ +.+.+ .++++|+||++.-
T Consensus 1 r~KI~IIGaG~VG~-~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~-~~~~advvvitag 78 (142)
T d1uxja1 1 RKKISIIGAGFVGS-TTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-DTANSDVIVVTSG 78 (142)
T ss_dssp CCEEEEECCSHHHH-HHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-GGTTCSEEEECCS
T ss_pred CCeEEEECCCHHHH-HHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH-HhcCCCEEEEeee
Confidence 36899999999998 455432 1 00000 11122223 34444 5789999999983
Q ss_pred -Cc---c------------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 -PH---I------------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 -P~---~------------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
|. . +.+++++|..+- ++.+++-+.++++.
T Consensus 79 ~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~-p~aivivvtNPvDv 123 (142)
T d1uxja1 79 APRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPLDA 123 (142)
T ss_dssp CC---------CHHHHHHHHHHHHHHHGGGC-TTCEEEECSSSHHH
T ss_pred ccCCcCcchhHHHhHHHHHHHHHHHHHhccC-CCceEEEeCCchHH
Confidence 21 1 124445555543 56667767777765
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.62 E-value=0.0011 Score=54.82 Aligned_cols=90 Identities=24% Similarity=0.260 Sum_probs=50.0
Q ss_pred CcEEEEcCChhhHHHHHHHHh---------hcH------------------HH-Hhh--CCCeEecChHHhhcCCCEEEE
Q psy6714 133 SDKQIAGTTERGPGALIASLN---------IVS------------------KA-TGT--MGAKITFDNKEVTLNSEVIIL 182 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~---------r~~------------------e~-l~e--~Gv~v~~d~~eav~~ADIVIL 182 (303)
|||+|||+|.+|.+ ++..+. .+. +. ++. ..+....+......++|+|++
T Consensus 1 MkI~ViGlG~vGl~-~a~~~a~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v 79 (196)
T d1dlja2 1 MKIAVAGSGYVGLS-LGVLLSLQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (196)
T ss_dssp CEEEEECCSHHHHH-HHHHHTTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCChhHHH-HHHHHHCCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence 89999999999985 444321 011 11 111 233344556666789999999
Q ss_pred eeC-Ccc----------HHHHHHhhccccCCCCEEE--EecCCCcHHHHHhhCCC
Q psy6714 183 AVK-PHI----------VPVALNDIKPVFNESNLLI--SVAGGVPIKNMEQALPK 224 (303)
Q Consensus 183 AVp-P~~----------v~~VL~eI~~~L~~g~IVV--SiaaGV~ie~L~~~l~~ 224 (303)
||| |.. +..+++.+... +++.+|| |+...-+.+.+...+..
T Consensus 80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~iii~Stv~pgt~~~~~~~~~~ 133 (196)
T d1dlja2 80 ATPTNYNSRINYFDTQHVETVIKEVLSV-NSHATLIIKSTIPIGFITEMRQKFQT 133 (196)
T ss_dssp CCCCCEETTTTEECCHHHHHHHHHHHHH-CSSCEEEECSCCCTTHHHHHHHHTTC
T ss_pred cCCccccccCCCcceeEEeehhhhhhhc-ccceeEEeeeecCceeeeeeeeccch
Confidence 997 321 12223333332 3455555 44444455666665553
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.60 E-value=0.0031 Score=51.30 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=38.4
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH-----------hhcHHH----HhhCCCeE--ecChHHhhcCCCEEEEeeC
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL-----------NIVSKA----TGTMGAKI--TFDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al-----------~r~~e~----l~e~Gv~v--~~d~~eav~~ADIVILAVp 185 (303)
+...+|.|||+|.||. +++..+ +++.++ ..++|..+ ..+..+.+.++|+||.|+.
T Consensus 22 l~~~~ilviGaG~~g~-~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~ats 93 (159)
T d1gpja2 22 LHDKTVLVVGAGEMGK-TVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATA 93 (159)
T ss_dssp CTTCEEEEESCCHHHH-HHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCS
T ss_pred cccCeEEEECCCHHHH-HHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecC
Confidence 3567899999999999 455442 233332 23557654 3466678889999999996
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.52 E-value=0.0015 Score=51.76 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=52.3
Q ss_pred CcEEEEc-CChhhHHHHHHHHhhcHHHHhhCCCe----EecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEE
Q psy6714 133 SDKQIAG-TTERGPGALIASLNIVSKATGTMGAK----ITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLI 207 (303)
Q Consensus 133 mkIgIIG-lG~MG~~~La~al~r~~e~l~e~Gv~----v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVV 207 (303)
|||+|+| .|.||. ++..... +.|.. +..+..+.++++|+||=-..|+.+.+.++.... .+.-+|
T Consensus 1 mki~i~G~~GrMG~-~i~~~~~-------~~~~~l~~~id~~~~~~~~~~DVvIDFS~p~~~~~~l~~~~~---~~~p~V 69 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQ-EIQKVFS-------EKGHELVLKVDVNGVEELDSPDVVIDFSSPEALPKTVDLCKK---YRAGLV 69 (128)
T ss_dssp CEEEEETTTSHHHH-HHHHHHH-------HTTCEEEEEEETTEEEECSCCSEEEECSCGGGHHHHHHHHHH---HTCEEE
T ss_pred CEEEEECCCCHHHH-HHHHHHh-------cCCCeEEEEECCCcHHHhccCCEEEEecCHHHHHHHHHHHHh---cCCCEE
Confidence 8999999 599999 5654322 22332 223445567889999999999999999876543 344566
Q ss_pred EecCCCcHHHHH
Q psy6714 208 SVAGGVPIKNME 219 (303)
Q Consensus 208 SiaaGV~ie~L~ 219 (303)
+-..|.+.+.++
T Consensus 70 iGTTG~~~~~~~ 81 (128)
T d1vm6a3 70 LGTTALKEEHLQ 81 (128)
T ss_dssp ECCCSCCHHHHH
T ss_pred EEcCCCCHHHHH
Confidence 666788865443
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.52 E-value=0.0037 Score=51.25 Aligned_cols=82 Identities=16% Similarity=0.259 Sum_probs=47.1
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcHHH-------Hh----hCCC--eEecChHHhhcCCCEEEEeeC-
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVSKA-------TG----TMGA--KITFDNKEVTLNSEVIILAVK- 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~e~-------l~----e~Gv--~v~~d~~eav~~ADIVILAVp- 185 (303)
+.||+|||+|++|. .++..+ +...+. +. ..+. .+.....+.+++||+||++.-
T Consensus 20 ~~KV~IIGaG~VG~-~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitAg~ 98 (160)
T d1i0za1 20 NNKITVVGVGQVGM-ACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGV 98 (160)
T ss_dssp SSEEEEECCSHHHH-HHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECCSC
T ss_pred CCeEEEECCCHHHH-HHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEecCC
Confidence 56999999999999 455431 111111 11 1111 223334566889999999762
Q ss_pred ---Cc------------cHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 ---PH------------IVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 ---P~------------~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
|. .+++++.+|+++ .++.++|-+.++++.
T Consensus 99 ~~~~g~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiiivvtNPvDv 142 (160)
T d1i0za1 99 RQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIVVSNPVDI 142 (160)
T ss_dssp CCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHHH
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeCCchHH
Confidence 21 122334455554 356677778787775
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.46 E-value=0.00082 Score=54.09 Aligned_cols=79 Identities=13% Similarity=0.155 Sum_probs=49.7
Q ss_pred CCCcEEEEc-CChhhHHHHHHHHhhc--HH-HH------hhCCCeE---------ecChHHhhcCCCEEEEeeCCccHHH
Q psy6714 131 NRSDKQIAG-TTERGPGALIASLNIV--SK-AT------GTMGAKI---------TFDNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 131 ~~mkIgIIG-lG~MG~~~La~al~r~--~e-~l------~e~Gv~v---------~~d~~eav~~ADIVILAVpP~~v~~ 191 (303)
+.||||||| +|..|. .|.+.+.+. +. .+ ...|-.+ .....+...++|++|+|++.....+
T Consensus 1 q~mnVaIvGATGyvG~-eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s~~ 79 (144)
T d2hjsa1 1 QPLNVAVVGATGSVGE-ALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRA 79 (144)
T ss_dssp CCCCEEEETTTSHHHH-HHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHHH
T ss_pred CCCEEEEECCCCHHHH-HHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcchhhh
Confidence 468999998 799998 566655321 10 00 0112111 1222345678999999999888887
Q ss_pred HHHhhccccCCCCEEEEecCCC
Q psy6714 192 ALNDIKPVFNESNLLISVAGGV 213 (303)
Q Consensus 192 VL~eI~~~L~~g~IVVSiaaGV 213 (303)
+...+.. .+..||+..+..
T Consensus 80 ~~~~~~~---~g~~VID~Ss~f 98 (144)
T d2hjsa1 80 HAERARA---AGCSVIDLSGAL 98 (144)
T ss_dssp HHHHHHH---TTCEEEETTCTT
T ss_pred hcccccc---CCceEEeechhh
Confidence 7766543 677888766543
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.42 E-value=0.005 Score=49.78 Aligned_cols=82 Identities=17% Similarity=0.241 Sum_probs=48.7
Q ss_pred CCcEEEEcCChhhHHHHHHHH-----------hhcHH----------HH---hhCCCeE-ecChHHhhcCCCEEEEeeC-
Q psy6714 132 RSDKQIAGTTERGPGALIASL-----------NIVSK----------AT---GTMGAKI-TFDNKEVTLNSEVIILAVK- 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al-----------~r~~e----------~l---~e~Gv~v-~~d~~eav~~ADIVILAVp- 185 (303)
++||+|||+|.+|. .++..+ +...+ +. ......+ ..+..+.++++|+||++.-
T Consensus 3 ~~KI~IIGaG~VG~-~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~ 81 (150)
T d1t2da1 3 KAKIVLVGSGMIGG-VMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGF 81 (150)
T ss_dssp CCEEEEECCSHHHH-HHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSC
T ss_pred CCeEEEECCCHHHH-HHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEeccc
Confidence 46899999999998 455331 11111 01 1112222 2345567899999999984
Q ss_pred Cc--------------------cHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 PH--------------------IVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 P~--------------------~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
+. .+.+++++++.+- ++.+|+-+.++++.
T Consensus 82 ~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~-p~aivivvtNPvD~ 130 (150)
T d1t2da1 82 TKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDV 130 (150)
T ss_dssp SSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHH
T ss_pred ccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcC-CCeEEEEecCchHH
Confidence 21 2334445565543 66777778888775
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.30 E-value=0.002 Score=52.34 Aligned_cols=66 Identities=9% Similarity=0.105 Sum_probs=40.9
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcHHH-------------HhhCCCeEecChHHhhc--CCCEEEEeeCCccHHHHHHh
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNIVSKA-------------TGTMGAKITFDNKEVTL--NSEVIILAVKPHIVPVALND 195 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r~~e~-------------l~e~Gv~v~~d~~eav~--~ADIVILAVpP~~v~~VL~e 195 (303)
.++||||||+|.||. ..+..+...... ..........+..+++. +.|+|++|+|++.-.+++..
T Consensus 6 ~k~kv~iIG~G~~g~-~h~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~~H~~~~~~ 84 (172)
T d1lc0a1 6 GKFGVVVVGVGRAGS-VRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQEIDVAYICSESSSHEDYIRQ 84 (172)
T ss_dssp CSEEEEEECCSHHHH-HHHHHHTSHHHHTTEEEEEEECSSCCCEETTEEBCCHHHHHHCSSEEEEEECSCGGGHHHHHHH
T ss_pred CCcEEEEEcCCHHHH-HHHHHHHhCCCCcEEEEEeccchHHHHHhhccCcCCHHHHHhCCCcchhhhccccccccccccc
Confidence 368999999999998 344443322210 01111112345667664 57999999998887777665
Q ss_pred hc
Q psy6714 196 IK 197 (303)
Q Consensus 196 I~ 197 (303)
..
T Consensus 85 al 86 (172)
T d1lc0a1 85 FL 86 (172)
T ss_dssp HH
T ss_pred cc
Confidence 44
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.20 E-value=0.0025 Score=52.24 Aligned_cols=84 Identities=15% Similarity=0.201 Sum_probs=47.0
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH------------hhcHHH-------Hh----hCCC--eEecChHHhhcCCCEEEEee
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL------------NIVSKA-------TG----TMGA--KITFDNKEVTLNSEVIILAV 184 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al------------~r~~e~-------l~----e~Gv--~v~~d~~eav~~ADIVILAV 184 (303)
..+.||+|||+|++|. .++..+ +...+. +. ..+. .+..+..+.+++||+||++.
T Consensus 17 ~~~~KI~IIGaG~VG~-~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvita 95 (159)
T d2ldxa1 17 LSRCKITVVGVGDVGM-ACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITA 95 (159)
T ss_dssp CCCCEEEEECCSHHHH-HHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECC
T ss_pred CCCCeEEEECCCHHHH-HHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEec
Confidence 3457999999999999 455442 111111 11 1122 23334455678999999987
Q ss_pred CC----cc-----HH---HHHHh----hccccCCCCEEEEecCCCcH
Q psy6714 185 KP----HI-----VP---VALND----IKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 185 pP----~~-----v~---~VL~e----I~~~L~~g~IVVSiaaGV~i 215 (303)
-. .. +. +++++ |+.+ .++.+|+-+.++++.
T Consensus 96 g~~~~~~~~R~dll~~N~~i~~~i~~~i~~~-~p~~ivivvtNPvDv 141 (159)
T d2ldxa1 96 GARMVSGQTRLDLLQRNVAIMKAIVPGVIQN-SPDCKIIVVTNPVDI 141 (159)
T ss_dssp SCCCCTTTCSSCTTHHHHHHHHHHTTTHHHH-STTCEEEECSSSHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHhcc-CCCeEEEEeCCcHHH
Confidence 31 11 11 22333 3332 356677778787765
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.003 Score=51.83 Aligned_cols=85 Identities=16% Similarity=0.131 Sum_probs=58.0
Q ss_pred CCcEEEEc-CChhhHHHHHHHHhhcHH-------------H----------HhhCCCeEecChHHhhcCCCEEEEeeCCc
Q psy6714 132 RSDKQIAG-TTERGPGALIASLNIVSK-------------A----------TGTMGAKITFDNKEVTLNSEVIILAVKPH 187 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~al~r~~e-------------~----------l~e~Gv~v~~d~~eav~~ADIVILAVpP~ 187 (303)
.|||+|+| .|.||. +++........ . ....++.+..+..++.+.+|+||=-..|+
T Consensus 4 ~ikI~i~Ga~GrMG~-~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs~p~ 82 (162)
T d1diha1 4 NIRVAIAGAGGRMGR-QLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPE 82 (162)
T ss_dssp BEEEEETTTTSHHHH-HHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSCHH
T ss_pred CCEEEEECCCCHHHH-HHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEeccHH
Confidence 57999999 599999 67655322210 0 11335566777778889999999999999
Q ss_pred cHHHHHHhhccccCCCCEEEEecCCCcHHHHHh
Q psy6714 188 IVPVALNDIKPVFNESNLLISVAGGVPIKNMEQ 220 (303)
Q Consensus 188 ~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~ 220 (303)
.+.+.++.... .+.-+|.-..|.+.++++.
T Consensus 83 ~~~~~~~~a~~---~~~~~ViGTTG~~~~~~~~ 112 (162)
T d1diha1 83 GTLNHLAFCRQ---HGKGMVIGTTGFDEAGKQA 112 (162)
T ss_dssp HHHHHHHHHHH---TTCEEEECCCCCCHHHHHH
T ss_pred HHHHHHHHHHh---ccceeEEecCCCcHHHHHH
Confidence 98888865443 3455565667887665443
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=96.08 E-value=0.004 Score=49.79 Aligned_cols=82 Identities=16% Similarity=0.262 Sum_probs=43.2
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcHHH----Hhh--C-----C-CeEecChHHhhcCCCEEEEee--C
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVSKA----TGT--M-----G-AKITFDNKEVTLNSEVIILAV--K 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~e~----l~e--~-----G-v~v~~d~~eav~~ADIVILAV--p 185 (303)
+.||+|||+|++|. .++..+ +...++ ..+ . + ..+.....+.+++||+||++- +
T Consensus 1 r~KI~IIGaG~VG~-~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~ 79 (142)
T d1y6ja1 1 RSKVAIIGAGFVGA-SAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGAN 79 (142)
T ss_dssp CCCEEEECCSHHHH-HHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC-
T ss_pred CCeEEEECCCHHHH-HHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccc
Confidence 35899999999999 455431 111111 111 1 1 123333455688999999984 2
Q ss_pred --Ccc------------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 --PHI------------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 --P~~------------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
+.. +.++++.+..+- ++.++|-..++++.
T Consensus 80 ~~~~~~r~~l~~~N~~i~~~i~~~i~~~~-p~ai~ivvtNPvdv 122 (142)
T d1y6ja1 80 RKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVVSNPVDI 122 (142)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEECSSSHHH
T ss_pred cCcCcchhHHhhHHHHHHHHHHHHhhccC-CCceEEEecChHHH
Confidence 111 113334455433 55667767777765
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.06 E-value=0.0048 Score=51.11 Aligned_cols=79 Identities=8% Similarity=0.099 Sum_probs=47.8
Q ss_pred cCCCcEEEEc-CChhhHHHHHHHHhhcHH--------------HHh-----hCC--Ce-EecChHHhhcCCCEEEEeeCC
Q psy6714 130 WNRSDKQIAG-TTERGPGALIASLNIVSK--------------ATG-----TMG--AK-ITFDNKEVTLNSEVIILAVKP 186 (303)
Q Consensus 130 ~~~mkIgIIG-lG~MG~~~La~al~r~~e--------------~l~-----e~G--v~-v~~d~~eav~~ADIVILAVpP 186 (303)
.+++|||||| +|-.|. .|.+.+...+. .+. ..+ .. ......+...++|+||+|+|.
T Consensus 3 ~~kikVaIlGATGyvG~-elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~ 81 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGA-EIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPH 81 (183)
T ss_dssp SSCEEEEEESCSSHHHH-HHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSS
T ss_pred CCccEEEEECcccHHHH-HHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeecccc
Confidence 3578999998 888888 57766543221 010 011 11 112233456789999999999
Q ss_pred ccHHHHHHhhccccCCCCEEEEecCCC
Q psy6714 187 HIVPVALNDIKPVFNESNLLISVAGGV 213 (303)
Q Consensus 187 ~~v~~VL~eI~~~L~~g~IVVSiaaGV 213 (303)
....++...+.. . ..+|.+.++.
T Consensus 82 ~~s~~~~~~l~~---~-~~~v~~~~~~ 104 (183)
T d2cvoa1 82 GTTQEIIKGLPQ---E-LKIVDLSADF 104 (183)
T ss_dssp SHHHHHHHTSCS---S-CEEEECSSTT
T ss_pred chHHHHHHHHHh---c-Ccccccchhh
Confidence 988888766542 3 3455454443
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.97 E-value=0.0047 Score=51.40 Aligned_cols=63 Identities=8% Similarity=0.036 Sum_probs=41.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcH---------------------------------HHHhhCCCeEecChHHhhcCCC
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVS---------------------------------KATGTMGAKITFDNKEVTLNSE 178 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~---------------------------------e~l~e~Gv~v~~d~~eav~~AD 178 (303)
|.||||.|+|-||. .+.+++.... ..+.+.++.+..+..+...++|
T Consensus 1 MIKVaINGfGRIGR-~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vD 79 (178)
T d1b7go1 1 MVNVAVNGYGTIGK-RVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSD 79 (178)
T ss_dssp CEEEEEECCSHHHH-HHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCS
T ss_pred CeEEEEECCCHHHH-HHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCC
Confidence 56999999999999 6666532110 1122345555556667777899
Q ss_pred EEEEeeCCccHHHHHHh
Q psy6714 179 VIILAVKPHIVPVALND 195 (303)
Q Consensus 179 IVILAVpP~~v~~VL~e 195 (303)
+||-|++...-.+-++.
T Consensus 80 iViecTG~f~~~e~a~~ 96 (178)
T d1b7go1 80 IVVDTTPNGVGAQYKPI 96 (178)
T ss_dssp EEEECCSTTHHHHHHHH
T ss_pred EEEECCCCcCCHHHHHH
Confidence 99999987654444443
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=95.89 E-value=0.0033 Score=53.79 Aligned_cols=63 Identities=11% Similarity=0.030 Sum_probs=39.7
Q ss_pred CCcEEEEcCChhhHHHHHH----HH-------------hhcHH----HHhhCCC---eEecChHHhhc--CCCEEEEeeC
Q psy6714 132 RSDKQIAGTTERGPGALIA----SL-------------NIVSK----ATGTMGA---KITFDNKEVTL--NSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~----al-------------~r~~e----~l~e~Gv---~v~~d~~eav~--~ADIVILAVp 185 (303)
.+||||||+|.+|+ .++. .+ +.+.+ ..+++|+ ....+.+++++ +-|+|++|+|
T Consensus 16 ~irvgiIG~G~~~~-~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp 94 (237)
T d2nvwa1 16 PIRVGFVGLTSGKS-WVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK 94 (237)
T ss_dssp CEEEEEECCCSTTS-HHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred CeEEEEEecCcccc-HHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCC
Confidence 68999999999764 2221 11 11111 2234443 45678888875 5789999999
Q ss_pred CccHHHHHHh
Q psy6714 186 PHIVPVALND 195 (303)
Q Consensus 186 P~~v~~VL~e 195 (303)
+..-.+++..
T Consensus 95 ~~~h~~~~~~ 104 (237)
T d2nvwa1 95 VPEHYEVVKN 104 (237)
T ss_dssp HHHHHHHHHH
T ss_pred CcchhhHHHH
Confidence 7766665544
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.85 E-value=0.013 Score=46.85 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=14.5
Q ss_pred CcEEEEc-CChhhHHHHHHH
Q psy6714 133 SDKQIAG-TTERGPGALIAS 151 (303)
Q Consensus 133 mkIgIIG-lG~MG~~~La~a 151 (303)
|||+||| +|.+|. .++..
T Consensus 1 MKV~IiGA~G~VG~-~~a~~ 19 (145)
T d1hyea1 1 MKVTIIGASGRVGS-ATALL 19 (145)
T ss_dssp CEEEEETTTSHHHH-HHHHH
T ss_pred CEEEEECCCChHHH-HHHHH
Confidence 8999999 599999 45543
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.85 E-value=0.021 Score=43.92 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=44.4
Q ss_pred CcEEEEcCChhhHHHHHHHHhh----------cHHH---Hh-hCCCeEe-cC---h---HHh-hcCCCEEEEeeCCccHH
Q psy6714 133 SDKQIAGTTERGPGALIASLNI----------VSKA---TG-TMGAKIT-FD---N---KEV-TLNSEVIILAVKPHIVP 190 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~r----------~~e~---l~-e~Gv~v~-~d---~---~ea-v~~ADIVILAVpP~~v~ 190 (303)
|||.|+|+|.+|. .++..+.. +.++ +. +.|+.+. .| . .++ ++++|.++.+++.+...
T Consensus 1 M~IvI~G~G~~G~-~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~N 79 (132)
T d1lssa_ 1 MYIIIAGIGRVGY-TLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN 79 (132)
T ss_dssp CEEEEECCSHHHH-HHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred CEEEEECCCHHHH-HHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHHH
Confidence 8999999999999 57765432 2222 32 3466542 22 1 122 56889888888776555
Q ss_pred HHHHhhccccCCCCEEE
Q psy6714 191 VALNDIKPVFNESNLLI 207 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVV 207 (303)
-++..+...++..++|+
T Consensus 80 ~~~~~~~k~~~~~~iI~ 96 (132)
T d1lssa_ 80 LMSSLLAKSYGINKTIA 96 (132)
T ss_dssp HHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHHHcCCceEEE
Confidence 44444444455556554
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.84 E-value=0.0038 Score=51.68 Aligned_cols=64 Identities=9% Similarity=0.038 Sum_probs=39.7
Q ss_pred CCCcEEEEcCChhhHHHHHHHHhhcH----------------HHHhhC------------------CCeEecChHHhhcC
Q psy6714 131 NRSDKQIAGTTERGPGALIASLNIVS----------------KATGTM------------------GAKITFDNKEVTLN 176 (303)
Q Consensus 131 ~~mkIgIIGlG~MG~~~La~al~r~~----------------e~l~e~------------------Gv~v~~d~~eav~~ 176 (303)
|.+||||.|.|.||. .+.+.+.... ..+.+. |+.+..+..++.++
T Consensus 1 M~irIaINGfGRIGR-~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (172)
T d2czca2 1 MKVKVGVNGYGTIGK-RVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEK 79 (172)
T ss_dssp CCEEEEEECCSHHHH-HHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTT
T ss_pred CcEEEEEECCCHHHH-HHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhcc
Confidence 467999999999999 5665532111 112222 33333455566678
Q ss_pred CCEEEEeeCCccHHHHHHh
Q psy6714 177 SEVIILAVKPHIVPVALND 195 (303)
Q Consensus 177 ADIVILAVpP~~v~~VL~e 195 (303)
+|+||-|++...-.+-++.
T Consensus 80 vDvViEcTG~f~~~~~~~~ 98 (172)
T d2czca2 80 VDIIVDATPGGIGAKNKPL 98 (172)
T ss_dssp CSEEEECCSTTHHHHHHHH
T ss_pred CCEEEECCCCCCCHHHHHH
Confidence 9999999987665555543
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=95.70 E-value=0.011 Score=47.27 Aligned_cols=81 Identities=12% Similarity=0.220 Sum_probs=45.2
Q ss_pred CcEEEEcCChhhHHHHHHHH------------hhcHHH-------Hh----hCC-Ce-EecChHHhhcCCCEEEEeeC--
Q psy6714 133 SDKQIAGTTERGPGALIASL------------NIVSKA-------TG----TMG-AK-ITFDNKEVTLNSEVIILAVK-- 185 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al------------~r~~e~-------l~----e~G-v~-v~~d~~eav~~ADIVILAVp-- 185 (303)
.||+|||+|++|. .++..+ +...++ +. ..+ .. ...+..+.+++||+||++.-
T Consensus 2 ~Ki~IIGaG~VG~-~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~~ 80 (143)
T d1llda1 2 TKLAVIGAGAVGS-TLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPR 80 (143)
T ss_dssp CEEEEECCSHHHH-HHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred CEEEEECCCHHHH-HHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEecccc
Confidence 4799999999999 454331 111111 11 111 12 22444566889999999982
Q ss_pred --C-ccHHH-----------HHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 --P-HIVPV-----------ALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 --P-~~v~~-----------VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
| +.-.+ +..+|+++- ++.++|-+.++++.
T Consensus 81 ~~~g~~R~dl~~~N~~i~~~i~~~i~~~~-p~ai~ivvtNPvDv 123 (143)
T d1llda1 81 QKPGQSRLELVGATVNILKAIMPNLVKVA-PNAIYMLITNPVDI 123 (143)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHHH
T ss_pred cCCCCchhhhhhhhHHHHHHHHHHHHhhC-CCeEEEEeCCchHH
Confidence 2 22122 233455443 55677767777775
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.60 E-value=0.003 Score=50.82 Aligned_cols=80 Identities=13% Similarity=0.152 Sum_probs=48.0
Q ss_pred cEEEEc-CChhhHHHHHHHHhh------------cHHH--Hhh--C-----CCe--E-ecChHHhhcCCCEEEEeeC---
Q psy6714 134 DKQIAG-TTERGPGALIASLNI------------VSKA--TGT--M-----GAK--I-TFDNKEVTLNSEVIILAVK--- 185 (303)
Q Consensus 134 kIgIIG-lG~MG~~~La~al~r------------~~e~--l~e--~-----Gv~--v-~~d~~eav~~ADIVILAVp--- 185 (303)
||+||| +|++|. .++..+.. ...+ ..+ . ... + ..+..+.+++||+||++--
T Consensus 2 Kv~IiGA~G~VG~-~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~ 80 (144)
T d1mlda1 2 KVAVLGASGGIGQ-PLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR 80 (144)
T ss_dssp EEEEETTTSTTHH-HHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred eEEEECCCChHHH-HHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC
Confidence 799999 599999 56654311 1111 111 1 111 1 2345678899999999852
Q ss_pred -Cc------------cHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 186 -PH------------IVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 186 -P~------------~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
|. .++++++.+..+ .++.+|+-+.++++.
T Consensus 81 ~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvD~ 122 (144)
T d1mlda1 81 KPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPVNS 122 (144)
T ss_dssp CTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHHH
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchhh
Confidence 21 134555566665 466777778888875
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.51 E-value=0.003 Score=50.88 Aligned_cols=46 Identities=13% Similarity=0.215 Sum_probs=29.5
Q ss_pred ChHHhhcCCCEEEEeeC----Cc------------cHHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 169 DNKEVTLNSEVIILAVK----PH------------IVPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 169 d~~eav~~ADIVILAVp----P~------------~v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
+..+.++++|+||++-- |. .++++.++|..+- ++.+||-+.++++.
T Consensus 62 ~~~~~~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~-p~aivivvtNPvD~ 123 (145)
T d2cmda1 62 DATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITNPVNT 123 (145)
T ss_dssp CCHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHH
T ss_pred CCccccCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhC-CCcEEEEccCCchH
Confidence 34567889999999872 21 1234445555543 56677778888775
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=95.40 E-value=0.03 Score=42.75 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=43.6
Q ss_pred CcEEEEcCChhhHHHHHHHHhh----------cHH---HHhhCCCeE-ecC------hHHh-hcCCCEEEEeeCCccHHH
Q psy6714 133 SDKQIAGTTERGPGALIASLNI----------VSK---ATGTMGAKI-TFD------NKEV-TLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al~r----------~~e---~l~e~Gv~v-~~d------~~ea-v~~ADIVILAVpP~~v~~ 191 (303)
+++.|||+|.+|. .++..+.+ +.+ .+.+.|..+ ..| ..++ +++||.||++++......
T Consensus 1 k~~iIiG~G~~G~-~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~ 79 (134)
T d2hmva1 1 KQFAVIGLGRFGG-SIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAS 79 (134)
T ss_dssp CCEEEECCSHHHH-HHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHH
T ss_pred CEEEEECCCHHHH-HHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhH
Confidence 4689999999999 57766432 222 234555543 211 1222 678999999998665444
Q ss_pred HH-HhhccccCCCCEEEEecC
Q psy6714 192 AL-NDIKPVFNESNLLISVAG 211 (303)
Q Consensus 192 VL-~eI~~~L~~g~IVVSiaa 211 (303)
++ ..+...+...+ ||..+.
T Consensus 80 ~~~~~~~~~~~~~~-iiar~~ 99 (134)
T d2hmva1 80 TLTTLLLKELDIPN-IWVKAQ 99 (134)
T ss_dssp HHHHHHHHHTTCSE-EEEECC
T ss_pred HHHHHHHHHcCCCc-EEeecc
Confidence 43 33344443333 444433
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=95.37 E-value=0.03 Score=44.61 Aligned_cols=80 Identities=13% Similarity=0.192 Sum_probs=45.0
Q ss_pred cEEEEc-CChhhHHHHHHHH------------h--hcHHH-------Hh-----hCCCeEecChHHhhcCCCEEEEee--
Q psy6714 134 DKQIAG-TTERGPGALIASL------------N--IVSKA-------TG-----TMGAKITFDNKEVTLNSEVIILAV-- 184 (303)
Q Consensus 134 kIgIIG-lG~MG~~~La~al------------~--r~~e~-------l~-----e~Gv~v~~d~~eav~~ADIVILAV-- 184 (303)
||+||| .|++|. .++..+ + ...+. +. ....++.....+.+++||+||++-
T Consensus 2 KV~IiGaaG~VG~-~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvitaG~ 80 (142)
T d1o6za1 2 KVSVVGAAGTVGA-AAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI 80 (142)
T ss_dssp EEEEETTTSHHHH-HHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred eEEEECCCCcHHH-HHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEeccc
Confidence 799999 699999 455431 1 11111 11 112234334445578999999985
Q ss_pred --CCcc------------HHHHHHhhccccCCCCEEEEecCCCcH
Q psy6714 185 --KPHI------------VPVALNDIKPVFNESNLLISVAGGVPI 215 (303)
Q Consensus 185 --pP~~------------v~~VL~eI~~~L~~g~IVVSiaaGV~i 215 (303)
+|.. +.++.++|..+- ++.++|-+.++++.
T Consensus 81 ~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~-p~~i~ivvtNPvDv 124 (142)
T d1o6za1 81 PRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLTTSNPVDL 124 (142)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEECCSSHHH
T ss_pred ccccCCchhhHHHHHHHHHHHHHHHHHhcC-CCceEEEecChHHH
Confidence 2332 123334454433 56677777787765
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.08 E-value=0.018 Score=45.74 Aligned_cols=82 Identities=15% Similarity=0.137 Sum_probs=49.9
Q ss_pred cEEEEc-CChhhHHHHHHHHhhcHHHHh-hCCCeEecChHHhh-cCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEec
Q psy6714 134 DKQIAG-TTERGPGALIASLNIVSKATG-TMGAKITFDNKEVT-LNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVA 210 (303)
Q Consensus 134 kIgIIG-lG~MG~~~La~al~r~~e~l~-e~Gv~v~~d~~eav-~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSia 210 (303)
||+|+| .|.||. .++.......+ +. -.++....+..... .++|+||=-..|+.+.+.++.... .+.-+|.-.
T Consensus 1 kI~v~Ga~GrMG~-~i~~~i~~~~~-~~l~~~~d~~~~~~~~~~~~~DvvIDFS~p~~~~~~~~~~~~---~~~~~ViGT 75 (135)
T d1yl7a1 1 RVGVLGAKGKVGA-TMVRAVAAADD-LTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLID---NGIHAVVGT 75 (135)
T ss_dssp EEEEETTTSHHHH-HHHHHHHHSTT-SEEEEEECTTCCTHHHHTTTCSEEEECCCTTTHHHHHHHHHH---TTCEEEECC
T ss_pred CEEEECCCCHHHH-HHHHHHHhCCC-CEEEEEEecCCchhhhccccCCEEEEcccHHHHHHHHHHHHh---cCCCEEEec
Confidence 799999 799999 56544332221 10 00000011222222 579999999999999999876553 445566677
Q ss_pred CCCcHHHHHh
Q psy6714 211 GGVPIKNMEQ 220 (303)
Q Consensus 211 aGV~ie~L~~ 220 (303)
.|.+.++++.
T Consensus 76 TG~~~~~~~~ 85 (135)
T d1yl7a1 76 TGFTAERFQQ 85 (135)
T ss_dssp CCCCHHHHHH
T ss_pred cccchhHHHH
Confidence 7888654443
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.01 E-value=0.013 Score=46.92 Aligned_cols=52 Identities=15% Similarity=0.037 Sum_probs=31.7
Q ss_pred eEecChHHhhcCCCEEEEeeC----C------------ccHHHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 165 KITFDNKEVTLNSEVIILAVK----P------------HIVPVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVp----P------------~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
....+..+.++++|+||++-- | ..+.++...|..+-+...+||-..++++.-
T Consensus 68 ~~~~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~m 135 (154)
T d5mdha1 68 IATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTN 135 (154)
T ss_dssp EEESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH
T ss_pred ccCcccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHHH
Confidence 345677788999999999872 2 123444455655443444444456676653
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=94.99 E-value=0.007 Score=48.63 Aligned_cols=52 Identities=12% Similarity=0.011 Sum_probs=31.6
Q ss_pred eEecChHHhhcCCCEEEEeeC----Cc-cH-----------HHHHHhhccccCCCCEEEEecCCCcHH
Q psy6714 165 KITFDNKEVTLNSEVIILAVK----PH-IV-----------PVALNDIKPVFNESNLLISVAGGVPIK 216 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAVp----P~-~v-----------~~VL~eI~~~L~~g~IVVSiaaGV~ie 216 (303)
....+..+.++++|+||++-- |. .- .++.+.+..+-.++.+|+-+.++++.-
T Consensus 69 ~~~~~~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~ 136 (154)
T d1y7ta1 69 EATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTN 136 (154)
T ss_dssp EEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH
T ss_pred ccCCchhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHH
Confidence 445667788999999999871 22 22 233344555444566666566766653
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=94.80 E-value=0.019 Score=42.39 Aligned_cols=53 Identities=11% Similarity=0.090 Sum_probs=36.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh--------------cHHHHhhCCCeEec-ChHHhhcCCCEEEEee
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI--------------VSKATGTMGAKITF-DNKEVTLNSEVIILAV 184 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r--------------~~e~l~e~Gv~v~~-d~~eav~~ADIVILAV 184 (303)
+|||.|||.|-+|-..|++.+.. ..++|++.|+++.. ...+-++++|+||.+-
T Consensus 1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~Ss 68 (89)
T d1j6ua1 1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTP 68 (89)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECT
T ss_pred CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEec
Confidence 48999999999997557665321 12467788987642 2334467889888875
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=94.68 E-value=0.077 Score=43.49 Aligned_cols=53 Identities=13% Similarity=0.047 Sum_probs=34.1
Q ss_pred eEecChHHhhcCCCEEEEee-----CCcc-----------HHHHHHhhccccCCCCEEEEecCCCcHHH
Q psy6714 165 KITFDNKEVTLNSEVIILAV-----KPHI-----------VPVALNDIKPVFNESNLLISVAGGVPIKN 217 (303)
Q Consensus 165 ~v~~d~~eav~~ADIVILAV-----pP~~-----------v~~VL~eI~~~L~~g~IVVSiaaGV~ie~ 217 (303)
.+.++..+.++++|+||+.- |.+. +.++.+.|..+-+++.+|+-+.++++...
T Consensus 89 ~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t 157 (175)
T d7mdha1 89 SIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNA 157 (175)
T ss_dssp EEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHH
T ss_pred cccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHH
Confidence 45677788999999999987 1222 33444556555545666665667666544
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=94.51 E-value=0.038 Score=45.31 Aligned_cols=63 Identities=11% Similarity=0.103 Sum_probs=39.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcH----------------HH------------------HhhCCCeEecChHHhhcCC
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVS----------------KA------------------TGTMGAKITFDNKEVTLNS 177 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~----------------e~------------------l~e~Gv~v~~d~~eav~~A 177 (303)
|+||||-|.|-||. .+.+.+.... .. +.+.++.+..+..++..++
T Consensus 1 M~~VgINGfGRIGR-~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~v 79 (171)
T d1cf2o1 1 MKAVAINGYGTVGK-RVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEA 79 (171)
T ss_dssp CEEEEEECCSHHHH-HHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTC
T ss_pred CeEEEEEcCcHHHH-HHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCC
Confidence 67899999999999 5665521100 01 1222344334556667889
Q ss_pred CEEEEeeCCccHHHHHHh
Q psy6714 178 EVIILAVKPHIVPVALND 195 (303)
Q Consensus 178 DIVILAVpP~~v~~VL~e 195 (303)
|+||-|++...-.+-++.
T Consensus 80 DvViEcTG~f~~~~~~~~ 97 (171)
T d1cf2o1 80 DIVIDCTPEGIGAKNLKM 97 (171)
T ss_dssp SEEEECCSTTHHHHHHHH
T ss_pred CEEEEccCCCCCHHHHHH
Confidence 999999987655544443
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.57 E-value=0.026 Score=45.17 Aligned_cols=76 Identities=9% Similarity=0.081 Sum_probs=48.3
Q ss_pred cEEEEc-CChhhHHHHHHHHhhcH--H-HH------hhCCC---------eEecChHHhhcCCCEEEEeeCCccHHHHHH
Q psy6714 134 DKQIAG-TTERGPGALIASLNIVS--K-AT------GTMGA---------KITFDNKEVTLNSEVIILAVKPHIVPVALN 194 (303)
Q Consensus 134 kIgIIG-lG~MG~~~La~al~r~~--e-~l------~e~Gv---------~v~~d~~eav~~ADIVILAVpP~~v~~VL~ 194 (303)
|||||| +|-.|. .|.+.+.... . .+ ...|- .......+...++|++|+|+++....+...
T Consensus 3 kVaIvGATGyvG~-eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s~~~~~ 81 (154)
T d2gz1a1 3 TVAVVGATGAVGA-QMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKYAP 81 (154)
T ss_dssp EEEEETTTSHHHH-HHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHHHHH
T ss_pred EEEEECCCcHHHH-HHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccchhhHHh
Confidence 799999 699998 5666554331 0 00 11121 122333455678999999999888777776
Q ss_pred hhccccCCCCEEEEecCCC
Q psy6714 195 DIKPVFNESNLLISVAGGV 213 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaGV 213 (303)
+... .+..||+..+..
T Consensus 82 ~~~~---~~~~VIDlSsdf 97 (154)
T d2gz1a1 82 YAVK---AGVVVVDNTSYF 97 (154)
T ss_dssp HHHH---TTCEEEECSSTT
T ss_pred hhcc---ccceehhcChhh
Confidence 5543 678888876644
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.24 E-value=0.046 Score=42.59 Aligned_cols=73 Identities=4% Similarity=0.011 Sum_probs=43.4
Q ss_pred CcEEEEcCChhhHHHHHHHH----------hhcHHHHh----hCCCeE-e-------cChHHhhcCCCEEEEeeCCccHH
Q psy6714 133 SDKQIAGTTERGPGALIASL----------NIVSKATG----TMGAKI-T-------FDNKEVTLNSEVIILAVKPHIVP 190 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~al----------~r~~e~l~----e~Gv~v-~-------~d~~eav~~ADIVILAVpP~~v~ 190 (303)
++|.|||+|.||. .++..+ +++.+++. ..+... . ....+.+...|+++.+++.....
T Consensus 3 K~IliiGaG~~G~-~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~ 81 (182)
T d1e5qa1 3 KSVLMLGSGFVTR-PTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHA 81 (182)
T ss_dssp CEEEEECCSTTHH-HHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGHH
T ss_pred CEEEEECCCHHHH-HHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhhh
Confidence 5799999999999 455553 23333332 223221 1 12345677899999998877766
Q ss_pred HHHHhhccccCCCCEEEEe
Q psy6714 191 VALNDIKPVFNESNLLISV 209 (303)
Q Consensus 191 ~VL~eI~~~L~~g~IVVSi 209 (303)
.+...... .+..++++
T Consensus 82 ~~~~~~~~---~~~~~~~~ 97 (182)
T d1e5qa1 82 TVIKSAIR---QKKHVVTT 97 (182)
T ss_dssp HHHHHHHH---HTCEEECS
T ss_pred HHHHHHHh---hccceeec
Confidence 66554432 34455544
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.17 E-value=0.081 Score=47.12 Aligned_cols=73 Identities=10% Similarity=0.094 Sum_probs=47.1
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcH-------HHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVS-------KATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~-------e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~V 192 (303)
..+++|||+|.++.. -+..+ ++.. +.+...++.+..+..+++.+||||+.|++... .+
T Consensus 125 ~~~l~iiGaG~QA~~-~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~~--P~ 201 (320)
T d1omoa_ 125 SSVFGFIGCGTQAYF-QLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSRK--PV 201 (320)
T ss_dssp CCEEEEECCSHHHHH-HHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCSS--CC
T ss_pred ccEEEEecCcccHHH-HHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCcc--cc
Confidence 356999999999983 22221 1222 23445677777788888999999999997431 12
Q ss_pred HHhhccccCCCCEEEEe
Q psy6714 193 LNDIKPVFNESNLLISV 209 (303)
Q Consensus 193 L~eI~~~L~~g~IVVSi 209 (303)
+. .+.+++|..|+++
T Consensus 202 ~~--~~~l~~G~hv~~i 216 (320)
T d1omoa_ 202 VK--AEWVEEGTHINAI 216 (320)
T ss_dssp BC--GGGCCTTCEEEEC
T ss_pred cc--hhhcCCCCeEeec
Confidence 21 2346788876544
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.03 E-value=0.1 Score=42.65 Aligned_cols=87 Identities=10% Similarity=0.110 Sum_probs=52.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh----------cH-HHHh--hCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhcc
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI----------VS-KATG--TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKP 198 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r----------~~-e~l~--e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~ 198 (303)
.++++|+|.|.+|.+ ++..++. ++ +.++ -.|+.+ ....+++..+|+||.|+--.++.. .+...
T Consensus 24 Gk~v~V~GyG~iG~g-~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v-~~~~~a~~~adivvtaTGn~~vI~--~eh~~ 99 (163)
T d1li4a1 24 GKVAVVAGYGDVGKG-CAQALRGFGARVIITEIDPINALQAAMEGYEV-TTMDEACQEGNIFVTTTGCIDIIL--GRHFE 99 (163)
T ss_dssp TCEEEEECCSHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCSCSBC--HHHHT
T ss_pred CCEEEEeccccccHH-HHHHHHhCCCeeEeeecccchhHHhhcCceEe-eehhhhhhhccEEEecCCCccchh--HHHHH
Confidence 568999999999995 6655331 22 1222 347766 567889999999999996443211 12233
Q ss_pred ccCCCCEEEEe---cCCCcHHHHHhhC
Q psy6714 199 VFNESNLLISV---AGGVPIKNMEQAL 222 (303)
Q Consensus 199 ~L~~g~IVVSi---aaGV~ie~L~~~l 222 (303)
.++++.++.++ -.-|+++.|++..
T Consensus 100 ~MKdgaIL~N~Ghfd~EId~~~L~~~~ 126 (163)
T d1li4a1 100 QMKDDAIVCNIGHFDVEIDVKWLNENA 126 (163)
T ss_dssp TCCTTEEEEECSSSTTSBCHHHHHHHC
T ss_pred hccCCeEEEEeccccceecHHHHhhcc
Confidence 46567655533 1233455676643
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=92.95 E-value=0.14 Score=37.81 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=35.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh--------------cHHHHhhCCCeEec-ChHHhhcCCCEEEEee
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI--------------VSKATGTMGAKITF-DNKEVTLNSEVIILAV 184 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r--------------~~e~l~e~Gv~v~~-d~~eav~~ADIVILAV 184 (303)
.++|.|||.|-+|-..|+..+.. ..+.+.+.|+.+.. ...+.+++.|+||++-
T Consensus 8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~ 75 (96)
T d1p3da1 8 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSS 75 (96)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECT
T ss_pred CCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECC
Confidence 67899999999996567665321 12456677887543 3344567888888765
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=92.14 E-value=0.075 Score=48.17 Aligned_cols=77 Identities=9% Similarity=0.093 Sum_probs=46.9
Q ss_pred CCcEEEEcCChhhHHHHHHHH------------hhcH-------HHHhh-CCCe--EecChHHhhcCCCEEEEeeCCccH
Q psy6714 132 RSDKQIAGTTERGPGALIASL------------NIVS-------KATGT-MGAK--ITFDNKEVTLNSEVIILAVKPHIV 189 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al------------~r~~-------e~l~e-~Gv~--v~~d~~eav~~ADIVILAVpP~~v 189 (303)
-.+++|||+|..+. .-+.++ +++. +.+.+ .|+. ++.+.+++++.||||+.|+....-
T Consensus 128 a~~l~iiG~G~QA~-~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas~s~ 206 (340)
T d1x7da_ 128 ARKMALIGNGAQSE-FQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKAY 206 (340)
T ss_dssp CCEEEEECCSTTHH-HHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSSE
T ss_pred CceEEEEcccHHHH-HHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccccCCC
Confidence 35799999999997 222221 1222 22333 3664 467889999999999999854332
Q ss_pred HHHHHhhccccCCCCEEEEecCC
Q psy6714 190 PVALNDIKPVFNESNLLISVAGG 212 (303)
Q Consensus 190 ~~VL~eI~~~L~~g~IVVSiaaG 212 (303)
..++. ...+++|..|. .+++
T Consensus 207 ~Pv~~--~~~l~pG~hI~-aiGs 226 (340)
T d1x7da_ 207 ATIIT--PDMLEPGMHLN-AVGG 226 (340)
T ss_dssp EEEEC--GGGCCTTCEEE-ECSC
T ss_pred Ccccc--hhhcCCCCEEe-eccc
Confidence 23332 23466787655 4444
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.01 E-value=0.083 Score=40.80 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=36.4
Q ss_pred CcEEEE-cCChhhHHHHHHHH----------hhcHHHH-------hhC---CCeEecChHHhhcCCCEEEEeeCCccHHH
Q psy6714 133 SDKQIA-GTTERGPGALIASL----------NIVSKAT-------GTM---GAKITFDNKEVTLNSEVIILAVKPHIVPV 191 (303)
Q Consensus 133 mkIgII-GlG~MG~~~La~al----------~r~~e~l-------~e~---Gv~v~~d~~eav~~ADIVILAVpP~~v~~ 191 (303)
|||+|| |+|.||. .|+..+ .++.+++ ... ......+........+....++......+
T Consensus 1 Mki~vigGaG~iG~-alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (212)
T d1jaya_ 1 MRVALLGGTGNLGK-GLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWEHAID 79 (212)
T ss_dssp CEEEEETTTSHHHH-HHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHHHHHH
T ss_pred CEEEEEeCCcHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEeeccccccchhhhhhhheeeeccch
Confidence 899999 8999999 476553 2233322 111 12233444555556777777777666666
Q ss_pred HHH
Q psy6714 192 ALN 194 (303)
Q Consensus 192 VL~ 194 (303)
.+.
T Consensus 80 ~~~ 82 (212)
T d1jaya_ 80 TAR 82 (212)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=91.88 E-value=0.1 Score=42.85 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=44.6
Q ss_pred CcEEEEcCChhhHHHHHHH---------HhhcHHHH---hh---CCCeEec----ChHHhhcCCCEEEEeeC-Cc-cHHH
Q psy6714 133 SDKQIAGTTERGPGALIAS---------LNIVSKAT---GT---MGAKITF----DNKEVTLNSEVIILAVK-PH-IVPV 191 (303)
Q Consensus 133 mkIgIIGlG~MG~~~La~a---------l~r~~e~l---~e---~Gv~v~~----d~~eav~~ADIVILAVp-P~-~v~~ 191 (303)
-|+.|||.|..|...+..+ ++.+.+++ +. ..+.... ...+.+++||+||-++. |- ....
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~aP~ 112 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPI 112 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCC
T ss_pred cEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcccCe
Confidence 4799999999998544433 12222222 21 1233222 23567889999999984 22 1122
Q ss_pred HH-HhhccccCCCCEEEEec
Q psy6714 192 AL-NDIKPVFNESNLLISVA 210 (303)
Q Consensus 192 VL-~eI~~~L~~g~IVVSia 210 (303)
++ +++...++++.+||.++
T Consensus 113 lIt~~mv~~Mk~GSVIVDva 132 (168)
T d1pjca1 113 LVPASLVEQMRTGSVIVDVA 132 (168)
T ss_dssp CBCHHHHTTSCTTCEEEETT
T ss_pred eecHHHHhhcCCCcEEEEee
Confidence 22 23334466899999764
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=91.47 E-value=0.16 Score=38.70 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=41.0
Q ss_pred CCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccccCCCCEEEEecCCCcHHHHHhhCC
Q psy6714 163 GAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPVFNESNLLISVAGGVPIKNMEQALP 223 (303)
Q Consensus 163 Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~L~~g~IVVSiaaGV~ie~L~~~l~ 223 (303)
|..+..+..|+=...|++++++|++.+.++++++... .-..+ + +..|...+.+.+.+.
T Consensus 43 G~~~y~sl~~lp~~~D~vvi~vp~~~~~~~l~~~~~~-g~k~v-~-~~~g~~~~~~~~~a~ 100 (116)
T d1y81a1 43 GLKCYRSVRELPKDVDVIVFVVPPKVGLQVAKEAVEA-GFKKL-W-FQPGAESEEIRRFLE 100 (116)
T ss_dssp TEECBSSGGGSCTTCCEEEECSCHHHHHHHHHHHHHT-TCCEE-E-ECTTSCCHHHHHHHH
T ss_pred CccccccchhccccceEEEEEeCHHHHHHHHHHHHhc-CCceE-E-eccchhhHHHHHHHH
Confidence 5566667777667789999999999999999987642 22223 2 456776666766553
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.47 E-value=0.097 Score=39.76 Aligned_cols=96 Identities=7% Similarity=0.024 Sum_probs=51.9
Q ss_pred CCCCcccccCCCcEEEEcCChhhHHHHHHHHhhcHHHHhhCCCeE--ec-C-hHHhhcCCCEEEEeeCCccHHHHHHhhc
Q psy6714 122 TPSSREARWNRSDKQIAGTTERGPGALIASLNIVSKATGTMGAKI--TF-D-NKEVTLNSEVIILAVKPHIVPVALNDIK 197 (303)
Q Consensus 122 ~~~~~~~~~~~mkIgIIGlG~MG~~~La~al~r~~e~l~e~Gv~v--~~-d-~~eav~~ADIVILAVpP~~v~~VL~eI~ 197 (303)
|++.++ ..||||||.|.+|. ||+.+ +.++|+++ .+ + +.-+..-+|..+.+ ..++...+.+ +.
T Consensus 5 ~~~~~~----~~kigIlGgGQL~r-Mla~a-------A~~lG~~v~v~d~~~~~PA~~va~~~i~~-~~~d~~~l~~-~~ 70 (111)
T d1kjqa2 5 TALRPA----ATRVMLLGSGELGK-EVAIE-------CQRLGVEVIAVDRYADAPAMHVAHRSHVI-NMLDGDALRR-VV 70 (111)
T ss_dssp CTTSTT----CCEEEEESCSHHHH-HHHHH-------HHTTTCEEEEEESSTTCGGGGGSSEEEEC-CTTCHHHHHH-HH
T ss_pred CCCCCC----CCEEEEEeCCHHHH-HHHHH-------HHHCCCEEEEEcCCCCCchhhcCCeEEEC-CCCCHHHHHH-HH
Confidence 455553 67899999999999 88755 45667653 22 1 11234457776665 4444443332 21
Q ss_pred cccCCCCEEEEecCCCcHHHHHhhCCCCCceEEEecCc
Q psy6714 198 PVFNESNLLISVAGGVPIKNMEQALPKNSRIIRAMPNT 235 (303)
Q Consensus 198 ~~L~~g~IVVSiaaGV~ie~L~~~l~~~~~VVr~mPn~ 235 (303)
.....+ +|.--.=-|+.+.|+.+-. ..+.++|+.
T Consensus 71 ~~~~~D-viT~E~EnI~~~~L~~le~---~g~~v~Ps~ 104 (111)
T d1kjqa2 71 ELEKPH-YIVPEIEAIATDMLIQLEE---EGLNVVPCA 104 (111)
T ss_dssp HHHCCS-EEEECSSCSCHHHHHHHHH---TTCEESSCH
T ss_pred HhhCCc-eEEEEecCcCHHHHHHHHH---CCCeECCCH
Confidence 111123 3333334566666666532 235566664
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=89.42 E-value=0.24 Score=35.61 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=16.6
Q ss_pred cCCCcEEEEcCChhhHHHHHHH
Q psy6714 130 WNRSDKQIAGTTERGPGALIAS 151 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~a 151 (303)
+..+||.|+|+|..|. +++..
T Consensus 3 ~~~K~v~ViGlG~sG~-s~a~~ 23 (93)
T d2jfga1 3 YQGKNVVIIGLGLTGL-SCVDF 23 (93)
T ss_dssp CTTCCEEEECCSHHHH-HHHHH
T ss_pred cCCCEEEEEeECHHHH-HHHHH
Confidence 4567899999999998 45544
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=89.24 E-value=0.18 Score=41.81 Aligned_cols=39 Identities=15% Similarity=0.382 Sum_probs=23.5
Q ss_pred HhhcCCCEEEEeeC-Ccc-HHHHH-HhhccccCCCCEEEEec
Q psy6714 172 EVTLNSEVIILAVK-PHI-VPVAL-NDIKPVFNESNLLISVA 210 (303)
Q Consensus 172 eav~~ADIVILAVp-P~~-v~~VL-~eI~~~L~~g~IVVSia 210 (303)
+.+.+||+||-++. |-. ...++ +++...+++|.+||.++
T Consensus 110 ~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva 151 (183)
T d1l7da1 110 KELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 151 (183)
T ss_dssp HHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred HHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence 44778999999983 221 11111 23334466899999764
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=89.02 E-value=0.53 Score=38.21 Aligned_cols=78 Identities=14% Similarity=0.067 Sum_probs=49.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHhh----------cHH-HH--hhCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhcc
Q psy6714 132 RSDKQIAGTTERGPGALIASLNI----------VSK-AT--GTMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKP 198 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r----------~~e-~l--~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~ 198 (303)
.+++.|+|.|.+|.+ ++..++- ++- .+ .-.|+.+ .+..++++.+|++|.++--..+.. .+...
T Consensus 23 Gk~vvV~GYG~vGrG-~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v-~~~~~a~~~aDi~vTaTGn~~vI~--~~h~~ 98 (163)
T d1v8ba1 23 GKIVVICGYGDVGKG-CASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNVDVIK--LEHLL 98 (163)
T ss_dssp TSEEEEECCSHHHHH-HHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSSSSBC--HHHHT
T ss_pred CCEEEEecccccchh-HHHHHHhCCCEEEEEecCchhhHHHHhcCCcc-CchhHccccCcEEEEcCCCCcccc--HHHHH
Confidence 468999999999995 5555331 221 22 2358877 778899999999999996443211 12223
Q ss_pred ccCCCCEEEEecCCCc
Q psy6714 199 VFNESNLLISVAGGVP 214 (303)
Q Consensus 199 ~L~~g~IVVSiaaGV~ 214 (303)
.++++.| |.-++..+
T Consensus 99 ~MKdgaI-l~N~GHfd 113 (163)
T d1v8ba1 99 KMKNNAV-VGNIGHFD 113 (163)
T ss_dssp TCCTTCE-EEECSSTT
T ss_pred HhhCCeE-EEeccccc
Confidence 3556665 44445444
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.56 E-value=0.086 Score=41.01 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=50.5
Q ss_pred CcEEEEcC----ChhhHHHHHHHHhhcHH-H-------Hh-hCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhccc
Q psy6714 133 SDKQIAGT----TERGPGALIASLNIVSK-A-------TG-TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKPV 199 (303)
Q Consensus 133 mkIgIIGl----G~MG~~~La~al~r~~e-~-------l~-e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~~ 199 (303)
..|+|||. |.+|. .+...+..... + .. =.|..+..+..|+=...|+++++||+..+.++++++...
T Consensus 9 ksIAVVGaS~~~~~~g~-~v~~~L~~~~~g~v~pVnP~~~~i~G~~~y~sl~dlp~~vDlvvi~vp~~~~~~~~~~~~~~ 87 (129)
T d2csua1 9 KGIAVIGASNDPKKLGY-EVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIVVPKRFVKDTLIQCGEK 87 (129)
T ss_dssp SEEEEETCCSCTTSHHH-HHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEECSCHHHHHHHHHHHHHH
T ss_pred CeEEEEccCCCCCCcHH-HHHHHHHHcCCCcEEEeccCccccCCeEeecchhhcCCCCceEEEecChHHhHHHHHHHHHc
Confidence 57999996 67777 44444433211 1 01 136666677777767899999999999999999987653
Q ss_pred cCCCCEEEEecCCC
Q psy6714 200 FNESNLLISVAGGV 213 (303)
Q Consensus 200 L~~g~IVVSiaaGV 213 (303)
- -..+|| +.+|.
T Consensus 88 g-~~~~vi-~s~Gf 99 (129)
T d2csua1 88 G-VKGVVI-ITAGF 99 (129)
T ss_dssp T-CCEEEE-CCCSS
T ss_pred C-CCEEEE-ecccc
Confidence 2 223333 45554
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=88.18 E-value=0.92 Score=33.36 Aligned_cols=63 Identities=11% Similarity=0.006 Sum_probs=37.3
Q ss_pred cCCCcEEEEcCChhhHHHHHHHH-hh-----------cH---HHHhhCCCeEecC--hHHhhcCCCEEEEeeCCccHHHH
Q psy6714 130 WNRSDKQIAGTTERGPGALIASL-NI-----------VS---KATGTMGAKITFD--NKEVTLNSEVIILAVKPHIVPVA 192 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al-~r-----------~~---e~l~e~Gv~v~~d--~~eav~~ADIVILAVpP~~v~~V 192 (303)
+...+|.|||.|.+|.. -+..+ +. .. ..+.+.+++.... ..+.+.++++|+.|+....+..-
T Consensus 10 l~~k~vlVvG~G~va~~-ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n~~ 88 (113)
T d1pjqa1 10 LRDRDCLIVGGGDVAER-KARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDTVNQR 88 (113)
T ss_dssp CBTCEEEEECCSHHHHH-HHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCHHHHHH
T ss_pred eCCCEEEEECCCHHHHH-HHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCCHHHHHH
Confidence 34679999999999983 33332 11 01 1122334443321 23347789999999987777544
Q ss_pred H
Q psy6714 193 L 193 (303)
Q Consensus 193 L 193 (303)
+
T Consensus 89 i 89 (113)
T d1pjqa1 89 V 89 (113)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=87.60 E-value=0.16 Score=36.52 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=20.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHhhcHHHHhhCCCe
Q psy6714 132 RSDKQIAGTTERGPGALIASLNIVSKATGTMGAK 165 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al~r~~e~l~e~Gv~ 165 (303)
|++|||||.|..|. ||+.+ ...+|++
T Consensus 1 ~k~vgIlG~GQLgr-Ml~~A-------a~~LG~~ 26 (78)
T d3etja2 1 MKQVCVLGNGQLGR-MLRQA-------GEPLGIA 26 (78)
T ss_dssp CEEEEEEBCSHHHH-HHHHH-------HGGGTEE
T ss_pred CCEEEEEcCCHHHH-HHHHH-------HHHcCCE
Confidence 46899999999999 88754 3456665
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.05 E-value=0.22 Score=40.24 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=33.5
Q ss_pred CCcEEEEc-CChhhHHHHHHH-Hh---------hcHHHHh---hCCCeEe-------cChHHhhcCCCEEEEeeC
Q psy6714 132 RSDKQIAG-TTERGPGALIAS-LN---------IVSKATG---TMGAKIT-------FDNKEVTLNSEVIILAVK 185 (303)
Q Consensus 132 ~mkIgIIG-lG~MG~~~La~a-l~---------r~~e~l~---e~Gv~v~-------~d~~eav~~ADIVILAVp 185 (303)
|+||.|+| +|.+|.+ ++.. ++ +..+++. ..++.+. .+..++++++|+||.++.
T Consensus 3 ~kkIlV~GatG~iG~~-v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g 76 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLT-TLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (205)
T ss_dssp CCEEEEESTTSHHHHH-HHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCCHHHHH-HHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEec
Confidence 67999998 8999994 5543 22 2223322 2345432 223467889999999884
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=86.93 E-value=0.51 Score=38.34 Aligned_cols=66 Identities=23% Similarity=0.327 Sum_probs=44.4
Q ss_pred cCCCcEEEEcCCh-hhHHHHHHHHhhcHHHHhhCCCeEe------cChHHhhcCCCEEEEee-CCccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTTE-RGPGALIASLNIVSKATGTMGAKIT------FDNKEVTLNSEVIILAV-KPHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG~-MG~~~La~al~r~~e~l~e~Gv~v~------~d~~eav~~ADIVILAV-pP~~v~~VL~eI~~~L~ 201 (303)
+..++|.|||-+. +|.+ |+..+ .+.|.+++ .+..+.++++|+||.|+ +|..+. .+.++
T Consensus 35 l~GK~v~VIGrS~~VG~P-la~lL-------~~~gatVt~~h~~t~~l~~~~~~ADivI~a~G~p~~i~------~~~vk 100 (166)
T d1b0aa1 35 TFGLNAVVIGASNIVGRP-MSMEL-------LLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIP------GDWIK 100 (166)
T ss_dssp CTTCEEEEECCCTTTHHH-HHHHH-------HTTTCEEEEECSSCSCHHHHHHHCSEEEECSCCTTCBC------TTTSC
T ss_pred cccceEEEEeccccccHH-HHHHH-------HHhhccccccccccchhHHHHhhhhHhhhhccCccccc------ccccC
Confidence 3468899999765 7876 43322 23455442 35577889999999999 466542 34577
Q ss_pred CCCEEEEe
Q psy6714 202 ESNLLISV 209 (303)
Q Consensus 202 ~g~IVVSi 209 (303)
++.+||++
T Consensus 101 ~g~vvIDv 108 (166)
T d1b0aa1 101 EGAIVIDV 108 (166)
T ss_dssp TTCEEEEC
T ss_pred CCcEEEec
Confidence 88888854
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=86.67 E-value=0.63 Score=38.59 Aligned_cols=98 Identities=11% Similarity=0.102 Sum_probs=57.8
Q ss_pred cCCCcEEEEcCChhhHHHHHHHHhh----------cH---HHHhhCCCeEecChHHhhc-CCCEEEEeeCCccHH-HHHH
Q psy6714 130 WNRSDKQIAGTTERGPGALIASLNI----------VS---KATGTMGAKITFDNKEVTL-NSEVIILAVKPHIVP-VALN 194 (303)
Q Consensus 130 ~~~mkIgIIGlG~MG~~~La~al~r----------~~---e~l~e~Gv~v~~d~~eav~-~ADIVILAVpP~~v~-~VL~ 194 (303)
+..++|+|.|+|++|. .++..+.. +. .+....|.... ++.+++. +|||++.|=-...+. +.++
T Consensus 25 L~gk~v~IqG~G~VG~-~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~-~~~~~~~~~~DI~iPcA~~~~I~~~~a~ 102 (201)
T d1c1da1 25 LDGLTVLVQGLGAVGG-SLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAMGGVITTEVAR 102 (201)
T ss_dssp STTCEEEEECCSHHHH-HHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSCSCCBCHHHHH
T ss_pred CCCCEEEEECCCHHHH-HHHHHHHHCCCEEEEecchHHHHHHHHhhccccc-CccccccccceeeecccccccccHHHHh
Confidence 4578999999999999 46655321 11 23345677653 4455544 899999887655554 3444
Q ss_pred hhccccCCCCEEEEecCC-CcHHHHHhhCCCCCceEEEecCcH
Q psy6714 195 DIKPVFNESNLLISVAGG-VPIKNMEQALPKNSRIIRAMPNTP 236 (303)
Q Consensus 195 eI~~~L~~g~IVVSiaaG-V~ie~L~~~l~~~~~VVr~mPn~p 236 (303)
.|. -++|+.-+++ ++.+...+.|.. +-|-++|..-
T Consensus 103 ~i~-----ak~i~e~AN~p~~~~~~~~~L~~--rgI~~iPD~l 138 (201)
T d1c1da1 103 TLD-----CSVVAGAANNVIADEAASDILHA--RGILYAPDFV 138 (201)
T ss_dssp HCC-----CSEECCSCTTCBCSHHHHHHHHH--TTCEECCHHH
T ss_pred hhh-----hheeeccCCCCcchhhHHHHhcc--cceEEEehhh
Confidence 442 3577766654 444445555432 2355666543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.80 E-value=0.68 Score=36.27 Aligned_cols=13 Identities=15% Similarity=0.207 Sum_probs=11.7
Q ss_pred CcEEEEcCChhhH
Q psy6714 133 SDKQIAGTTERGP 145 (303)
Q Consensus 133 mkIgIIGlG~MG~ 145 (303)
-+|.|+|+|.||.
T Consensus 28 d~VlI~G~G~iG~ 40 (171)
T d1pl8a2 28 HKVLVCGAGPIGM 40 (171)
T ss_dssp CEEEEECCSHHHH
T ss_pred CEEEEECCCccHH
Confidence 4699999999998
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=84.18 E-value=0.16 Score=40.93 Aligned_cols=78 Identities=9% Similarity=0.026 Sum_probs=40.0
Q ss_pred CCcEEEEcCChhhHHHHHHHH----------hhcHHHH-------hhC-CCeEecChHHhhcCCCEEEEeeCCccHHHHH
Q psy6714 132 RSDKQIAGTTERGPGALIASL----------NIVSKAT-------GTM-GAKITFDNKEVTLNSEVIILAVKPHIVPVAL 193 (303)
Q Consensus 132 ~mkIgIIGlG~MG~~~La~al----------~r~~e~l-------~e~-Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL 193 (303)
.++|.|+|.|.++. +++.++ +|+.+++ ... .+...........++|+||-|+|...-.+..
T Consensus 18 ~k~vlIlGaGGaar-ai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g~~~~~~ 96 (171)
T d1p77a1 18 NQHVLILGAGGATK-GVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSGGTA 96 (171)
T ss_dssp TCEEEEECCSHHHH-TTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-------
T ss_pred CCEEEEECCcHHHH-HHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccccccccc
Confidence 56899999999998 344332 2333222 222 2233332233457899999999865433332
Q ss_pred HhhccccCCCCEEEEec
Q psy6714 194 NDIKPVFNESNLLISVA 210 (303)
Q Consensus 194 ~eI~~~L~~g~IVVSia 210 (303)
......++++.+++.++
T Consensus 97 ~~~~~~~~~~~~~~D~v 113 (171)
T d1p77a1 97 SVDAEILKLGSAFYDMQ 113 (171)
T ss_dssp CCCHHHHHHCSCEEESC
T ss_pred chhhhhhcccceeeeee
Confidence 11122233566777655
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.51 E-value=0.58 Score=36.14 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=16.1
Q ss_pred cccCCCcEEEEcCChhhHH
Q psy6714 128 ARWNRSDKQIAGTTERGPG 146 (303)
Q Consensus 128 ~~~~~mkIgIIGlG~MG~~ 146 (303)
+|+..+++-|||.|.+|..
T Consensus 9 ~~l~gkrvLViGgG~va~~ 27 (150)
T d1kyqa1 9 HQLKDKRILLIGGGEVGLT 27 (150)
T ss_dssp ECCTTCEEEEEEESHHHHH
T ss_pred eeeCCCEEEEECCCHHHHH
Confidence 4567889999999999983
|
| >d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus subtilis [TaxId: 1423]
Probab=82.29 E-value=0.82 Score=36.94 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=43.2
Q ss_pred CCcEEEEcC-ChhhHHHHHHHHhhcHHHHhhCCCeEe-cChHHhhcCCCEEEEeeCCcc-HHHHH------HhhccccCC
Q psy6714 132 RSDKQIAGT-TERGPGALIASLNIVSKATGTMGAKIT-FDNKEVTLNSEVIILAVKPHI-VPVAL------NDIKPVFNE 202 (303)
Q Consensus 132 ~mkIgIIGl-G~MG~~~La~al~r~~e~l~e~Gv~v~-~d~~eav~~ADIVILAVpP~~-v~~VL------~eI~~~L~~ 202 (303)
|||||||-+ |+.... ...+++.|+.+. .+..+.++++|.|||.=-+.. ....+ +.|..+...
T Consensus 1 m~~igv~~~~G~~~~~---------~~al~~~G~~~~~i~~~~~l~~~D~lIlPGG~~~~~~~~~~~~~~~~~I~~~~~~ 71 (195)
T d2nv0a1 1 MLTIGVLGLQGAVREH---------IHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQ 71 (195)
T ss_dssp CCEEEEECSSSCCHHH---------HHHHHHTTCEEEEECSGGGGGGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CcEEEEEecCChHHHH---------HHHHHHCCCcEEEECCHHHHhhCCEEEECCCCccHHHHHhhhchhcchhhhhhhh
Confidence 799999998 666442 234667777532 233345788999999542222 12221 223344456
Q ss_pred CCEEEEecCCC
Q psy6714 203 SNLLISVAGGV 213 (303)
Q Consensus 203 g~IVVSiaaGV 213 (303)
+.-|+-++.|.
T Consensus 72 g~pilGIC~G~ 82 (195)
T d2nv0a1 72 GKPMFGTCAGL 82 (195)
T ss_dssp TCCEEEETHHH
T ss_pred cceeeeccccH
Confidence 66677777765
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=82.27 E-value=0.63 Score=36.02 Aligned_cols=86 Identities=10% Similarity=0.117 Sum_probs=54.0
Q ss_pred CcEEEEcCC----hhhHHHHHHHHhhcH-------HHHh---hCCCeEecChHHhhcCCCEEEEeeCCccHHHHHHhhcc
Q psy6714 133 SDKQIAGTT----ERGPGALIASLNIVS-------KATG---TMGAKITFDNKEVTLNSEVIILAVKPHIVPVALNDIKP 198 (303)
Q Consensus 133 mkIgIIGlG----~MG~~~La~al~r~~-------e~l~---e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~VL~eI~~ 198 (303)
+.|+|||+. ..|. .+...+.... -... =.|..+..+..++-...|+|++++|+..+.+++++...
T Consensus 14 ksIAVVGaS~~~~k~g~-~v~~~L~~~g~~~~~v~~~~~~~~i~g~~~~~~l~~i~~~iD~v~v~~p~~~v~~~v~~~~~ 92 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAH-YVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRPPSALMDHLPEVLA 92 (136)
T ss_dssp CEEEEETCCSSTTSHHH-HHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSCHHHHTTTHHHHHH
T ss_pred CeEEEEeecCCCCCchH-HHHHHHhcCCCCceEEEeccccceeeceecccchhhccCCCceEEEeccHHHHHHHHHHHHh
Confidence 469999974 5555 3333332211 0111 13556666777766778999999999999999988754
Q ss_pred ccCCCCEEEEecCCCcHHHHHhhC
Q psy6714 199 VFNESNLLISVAGGVPIKNMEQAL 222 (303)
Q Consensus 199 ~L~~g~IVVSiaaGV~ie~L~~~l 222 (303)
. ....++ +..|...+.+.+.+
T Consensus 93 ~-g~k~i~--~q~G~~~~e~~~~a 113 (136)
T d1iuka_ 93 L-RPGLVW--LQSGIRHPEFEKAL 113 (136)
T ss_dssp H-CCSCEE--ECTTCCCHHHHHHH
T ss_pred h-CCCeEE--EecCccCHHHHHHH
Confidence 3 344444 45577666666654
|
| >d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=82.21 E-value=0.42 Score=38.61 Aligned_cols=76 Identities=8% Similarity=0.090 Sum_probs=37.5
Q ss_pred CcEEEE--cCChhhHHHHHHHHhhcHHHHhhCCCeEecChHHhhcCCCEEEEeeCCccHHHH---------HHhhccccC
Q psy6714 133 SDKQIA--GTTERGPGALIASLNIVSKATGTMGAKITFDNKEVTLNSEVIILAVKPHIVPVA---------LNDIKPVFN 201 (303)
Q Consensus 133 mkIgII--GlG~MG~~~La~al~r~~e~l~e~Gv~v~~d~~eav~~ADIVILAVpP~~v~~V---------L~eI~~~L~ 201 (303)
|||+|| |.|++.. +..++++.........+.+. +.. ....+|.|||+= +-...+. .+.|...+.
T Consensus 1 MKI~IiDyg~gN~~s--i~~al~~~g~~~~~~~~~~~-~~~-~~~~~D~lIlPG-~G~f~~~~~~l~~~~~~~~i~~~~~ 75 (200)
T d1k9vf_ 1 MRIGIISVGPGNIMN--LYRGVKRASENFEDVSIELV-ESP-RNDLYDLLFIPG-VGHFGEGMRRLRENDLIDFVRKHVE 75 (200)
T ss_dssp CEEEEECSSSSCCHH--HHHHHHHHTTTSSSCEEEEE-SSS-CSCCCSEEEECC-CSCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CEEEEEeCCCcHHHH--HHHHHHHhccccccceEEEe-CCh-HhhccCeEEEcC-hHHHHHHHHhhhccccccccccccc
Confidence 899999 5666644 55544322211111111222 222 246799999931 1222221 122444444
Q ss_pred CCCEEEEecCCC
Q psy6714 202 ESNLLISVAGGV 213 (303)
Q Consensus 202 ~g~IVVSiaaGV 213 (303)
.+.-|+-++.|.
T Consensus 76 ~~~PiLGIClG~ 87 (200)
T d1k9vf_ 76 DERYVVGVCLGM 87 (200)
T ss_dssp TTCEEEEETHHH
T ss_pred ccceEEEEecce
Confidence 567777777665
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.28 E-value=1.9 Score=34.86 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=45.3
Q ss_pred cCCCcEEEEcCCh-hhHHHHHHHHhhcHHHHhhCCCeEe------cChHHhhcCCCEEEEeeC-CccHHHHHHhhccccC
Q psy6714 130 WNRSDKQIAGTTE-RGPGALIASLNIVSKATGTMGAKIT------FDNKEVTLNSEVIILAVK-PHIVPVALNDIKPVFN 201 (303)
Q Consensus 130 ~~~mkIgIIGlG~-MG~~~La~al~r~~e~l~e~Gv~v~------~d~~eav~~ADIVILAVp-P~~v~~VL~eI~~~L~ 201 (303)
+..+++.|||-+. +|.+ |+.. +.+.|.+++ .+..+.++++|+||.++. |..+. .++++
T Consensus 37 l~Gk~vvVIGrS~iVGrP-La~l-------L~~~gatVt~~~~~t~~l~~~~~~aDivi~a~G~~~~i~------~~~vk 102 (170)
T d1a4ia1 37 IAGRHAVVVGRSKIVGAP-MHDL-------LLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVK------GEWIK 102 (170)
T ss_dssp CTTCEEEEECCCTTTHHH-HHHH-------HHHTTCEEEEECTTCSSHHHHHTTCSEEEECCCCTTCBC------GGGSC
T ss_pred cccceEEEEecCCccchH-HHHH-------HHhccCceEEEecccccHHHHHhhccchhhccccccccc------ccccc
Confidence 4567899999765 6776 3322 233465432 345678899999999995 55432 33577
Q ss_pred CCCEEEEecCCCc
Q psy6714 202 ESNLLISVAGGVP 214 (303)
Q Consensus 202 ~g~IVVSiaaGV~ 214 (303)
++.+||+. |++
T Consensus 103 ~g~iviDv--gi~ 113 (170)
T d1a4ia1 103 PGAIVIDC--GIN 113 (170)
T ss_dssp TTCEEEEC--CCB
T ss_pred CCCeEecc--Ccc
Confidence 88888865 554
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=80.22 E-value=0.71 Score=36.77 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=12.0
Q ss_pred CCcEEEEcCChhhH
Q psy6714 132 RSDKQIAGTTERGP 145 (303)
Q Consensus 132 ~mkIgIIGlG~MG~ 145 (303)
.-+|.|+|+|.+|.
T Consensus 28 g~~VlI~GaG~vGl 41 (174)
T d1jqba2 28 GSSVVVIGIGAVGL 41 (174)
T ss_dssp TCCEEEECCSHHHH
T ss_pred CCEEEEEcCCcchh
Confidence 34699999999998
|