Psyllid ID: psy674

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70
Protein Sequence
MFKGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIEDLWIEGRH
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHccHHHHEHHccc
Coil and Loop (DISEMBL)
mfkgkaegQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIEDLWIEGRH
Flexible Loop (DISEMBL)
mfkgkaegqrtalWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKiedlwiegrh
Low Complexity Region (SEG)
MFKGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIEDLWIEGRH
Disordered region (IsUnstruct)
**********TALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIEDLWI****
Disordered Region (DISOPRED)
********QRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIEDLWIE***
Disordered Region (DISEMBL)
**********TALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIEDLWIEGRH
Disordered Region (DISPRO)
******EGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIEDLWIEG**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFKGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIEDLWIEGRH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	70	2.2.26 [Sep-21-2011]
P18502	1286	Protein patched OS=Drosop	yes	N/A	0.928	0.050	0.584	4e-17
Q98864	1220	Protein patched homolog 1	yes	N/A	0.942	0.054	0.484	1e-13
Q61115	1434	Protein patched homolog 1	yes	N/A	0.928	0.045	0.476	8e-13
Q13635	1447	Protein patched homolog 1	yes	N/A	0.928	0.044	0.476	8e-13
Q90693	1442	Protein patched homolog 1	yes	N/A	0.914	0.044	0.446	9e-11
Q9Y6C5	1203	Protein patched homolog 2	no	N/A	0.828	0.048	0.413	2e-08
O35595	1182	Protein patched homolog 2	no	N/A	0.828	0.049	0.396	1e-07
Q09614	1408	Protein patched homolog 1	yes	N/A	0.942	0.046	0.378	1e-06

>sp|P18502|PTC_DROME Protein patched OS=Drosophila melanogaster GN=ptc PE=2 SV=2

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/65 (58%), Positives = 50/65 (76%)

Query: 3   KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
           KGKA G RTA++ RS  Q  L +LG  +Q+HAGKV+FVA+L+L TFCVGLK+  +HSK+ 
Sbjct: 43  KGKARGSRTAIYLRSVFQSHLETLGSSVQKHAGKVLFVAILVLSTFCVGLKSAQIHSKVH 102

Query: 63  DLWIE 67
            LWI+
Sbjct: 103 QLWIQ 107

Segmentation polarity protein. Acts as a receptor for the hedgehog protein (HH). Associates with the smoothened protein (SMO) to transduce the hedgehog signal leading to the activation of wingless, decapentaplegic and patched itself. Participates in cell interactions that establish pattern within the segment and the imaginal disks during development. In the absence of HH, represses the constitutive signaling activity of smo through fused (FU).
Drosophila melanogaster (taxid: 7227)

>sp|Q98864|PTC1_DANRE Protein patched homolog 1 OS=Danio rerio GN=ptch1 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 43/66 (65%)

Query: 3   KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
           KGKA GQ+  LW R++ Q  LFSLG  +QRH GKV+F+ LL+     VGL+   + + IE
Sbjct: 51  KGKAVGQKAPLWIRARFQAFLFSLGCHIQRHCGKVLFIGLLVFGALSVGLRVAAIETDIE 110

Query: 63  DLWIEG 68
            LW+E 
Sbjct: 111 KLWVEA 116

Acts as a receptor for sonic hedgehog (SHH), indian hedgehog (IHH) and desert hedgehog (DHH). Associates with the smoothened protein (SMO) to transduce the hedgehog's proteins signal.

Danio rerio (taxid: 7955)

>sp|Q61115|PTC1_MOUSE Protein patched homolog 1 OS=Mus musculus GN=Ptch1 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 44/65 (67%)

Query: 3   KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
           KGKA G++  LW R+K QR LF LG ++Q++ GK + V LLI   F VGLK   + + +E
Sbjct: 53  KGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAANLETNVE 112

Query: 63  DLWIE 67
           +LW+E
Sbjct: 113 ELWVE 117

Acts as a receptor for sonic hedgehog (SHH), indian hedgehog (IHH) and desert hedgehog (DHH). Associates with the smoothened protein (SMO) to transduce the hedgehog's proteins signal. Seems to have a tumor suppressor function, as inactivation of this protein is probably a necessary, if not sufficient step for tumorigenesis.

Mus musculus (taxid: 10090)

>sp|Q13635|PTC1_HUMAN Protein patched homolog 1 OS=Homo sapiens GN=PTCH1 PE=1 SV=2

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 44/65 (67%)

Query: 3   KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
           KGKA G++  LW R+K QR LF LG ++Q++ GK + V LLI   F VGLK   + + +E
Sbjct: 67  KGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAANLETNVE 126

Query: 63  DLWIE 67
           +LW+E
Sbjct: 127 ELWVE 131

Acts as a receptor for sonic hedgehog (SHH), indian hedgehog (IHH) and desert hedgehog (DHH). Associates with the smoothened protein (SMO) to transduce the hedgehog's proteins signal. Seems to have a tumor suppressor function, as inactivation of this protein is probably a necessary, if not sufficient step for tumorigenesis.

Homo sapiens (taxid: 9606)

>sp|Q90693|PTC1_CHICK Protein patched homolog 1 OS=Gallus gallus GN=PTCH1 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 3   KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
           KG+A G+R  LW R+K QR LF+LG ++Q++ GK + V LL    F VGL+   + + +E
Sbjct: 68  KGRATGRRAPLWLRAKFQRLLFNLGCYIQKNCGKFLVVGLL-YSAFAVGLRAANLETNVE 126

Query: 63  DLWIE 67
           +LW+E
Sbjct: 127 ELWVE 131

Acts as a receptor for sonic hedgehog (SHH), indian hedgehog (IHH) and desert hedgehog (DHH). Associates with the smoothened protein (SMO) to transduce the hedgehog's proteins signal.

Gallus gallus (taxid: 9031)

>sp|Q9Y6C5|PTC2_HUMAN Protein patched homolog 2 OS=Homo sapiens GN=PTCH2 PE=2 SV=2

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 36/58 (62%)

Query: 10 RTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIEDLWIE 67
          +  LW R+  Q  LFSLG  +QRH GKV+F+ LL      +GL+  ++ + +E LW+E
Sbjct: 31 KAPLWLRAYFQGLLFSLGCGIQRHCGKVLFLGLLAFGALALGLRMAIIETNLEQLWVE 88

May have a role in epidermal development. May act as a receptor for Sonic hedgehog (SHH).

Homo sapiens (taxid: 9606)

>sp|O35595|PTC2_MOUSE Protein patched homolog 2 OS=Mus musculus GN=Ptch2 PE=2 SV=2

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 36/58 (62%)

Query: 10 RTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIEDLWIE 67
          +  LW R+  Q  LFSLG  +Q+H GKV+F+ L+      +GL+  V+ + +E LW+E
Sbjct: 31 QAPLWLRAYFQGLLFSLGCRIQKHCGKVLFLGLVAFGALALGLRVAVIETDLEQLWVE 88

May have a role in epidermal development. May act as a receptor for Sonic hedgehog (SHH).

Mus musculus (taxid: 10090)

>sp|Q09614|PTC1_CAEEL Protein patched homolog 1 OS=Caenorhabditis elegans GN=ptc-1 PE=1 SV=2

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 38/66 (57%)

Query: 1   MFKGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSK 60
           M +GKA G R AL+ RS +Q+ LF+LG  + R+A  +I    +I    C GL+   + + 
Sbjct: 101 MNRGKATGNRYALYSRSLIQKLLFALGNTVHRNAWSIILAVSMIFAVCCYGLQYVHIETD 160

Query: 61  IEDLWI 66
           I  LW+
Sbjct: 161 IVKLWV 166


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.332    0.144    0.453 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,206,845
Number of Sequences: 539616
Number of extensions: 693071
Number of successful extensions: 1643
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1633
Number of HSP's gapped (non-prelim): 9
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)

Required but not essential for cytokinesis of mitotically proliferating germ cells.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
242015824	1320	patched 1, putative [Pediculus humanus c	0.928	0.049	0.661	8e-20
321479419	1285	putative hedgehog receptor patched [Daph	0.928	0.050	0.630	2e-18
383849191	1327	PREDICTED: LOW QUALITY PROTEIN: protein	0.928	0.048	0.615	2e-18
380011471	1327	PREDICTED: LOW QUALITY PROTEIN: protein	0.928	0.048	0.615	2e-18
350416804	328	PREDICTED: protein patched-like, partial	0.928	0.198	0.615	2e-17
340727459	1292	PREDICTED: protein patched-like [Bombus	0.928	0.050	0.615	2e-17
307191578	101	Protein patched [Harpegnathos saltator]	0.914	0.633	0.656	2e-17
170033498	1211	patched [Culex quinquefasciatus] gi|1678	0.928	0.053	0.584	7e-16
195382308	1319	GJ21830 [Drosophila virilis] gi|19414466	0.928	0.049	0.584	2e-15
195028726	1334	GH20087 [Drosophila grimshawi] gi|193903	0.928	0.048	0.584	2e-15

>gi|242015824|ref|XP_002428547.1| patched 1, putative [Pediculus humanus corporis] gi|212513181|gb|EEB15809.1| patched 1, putative [Pediculus humanus corporis]

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 43/65 (66%), Positives = 54/65 (83%)

Query: 3   KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
           KGKA+GQRTALW R++LQ  LF+LG FL RHAGKV+FVA+L+L TFCV LK+  + +K E
Sbjct: 52  KGKADGQRTALWLRARLQAHLFALGCFLHRHAGKVLFVAVLVLATFCVALKSATIQTKAE 111

Query: 63  DLWIE 67
           DLW+E
Sbjct: 112 DLWVE 116

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321479419|gb|EFX90375.1| putative hedgehog receptor patched [Daphnia pulex]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/65 (63%), Positives = 51/65 (78%)

Query: 3   KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
           KGKA G + ALW R+KLQ  LF LGRF+QRHAGKV+FV LL+L TFCVGLK+  + + +E
Sbjct: 47  KGKASGNKAALWLRTKLQWHLFHLGRFVQRHAGKVLFVGLLVLSTFCVGLKSASIQTDVE 106

Query: 63  DLWIE 67
            LW+E
Sbjct: 107 KLWVE 111

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849191|ref|XP_003700229.1| PREDICTED: LOW QUALITY PROTEIN: protein patched-like [Megachile rotundata]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 54/65 (83%)

Query: 3   KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
           KGKAEGQR+A+W R++LQ +L  LG FLQRHAGKV+F+A++ L TFCV LK+  +HSK+E
Sbjct: 73  KGKAEGQRSAVWIRARLQDQLSQLGYFLQRHAGKVLFLAIVALATFCVALKSAQIHSKVE 132

Query: 63  DLWIE 67
            LW++
Sbjct: 133 QLWVQ 137

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011471|ref|XP_003689826.1| PREDICTED: LOW QUALITY PROTEIN: protein patched-like [Apis florea]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 54/65 (83%)

Query: 3   KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
           KGKAEGQR+A+W R++LQ +L  LG FLQRHAGKV+F+A++ L TFCV LK+  +HSK+E
Sbjct: 73  KGKAEGQRSAVWIRARLQDQLSQLGYFLQRHAGKVLFLAIVALATFCVALKSAQIHSKVE 132

Query: 63  DLWIE 67
            LW++
Sbjct: 133 QLWVQ 137

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416804|ref|XP_003491111.1| PREDICTED: protein patched-like, partial [Bombus impatiens]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 52/65 (80%)

Query: 3   KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
           KGKAEGQR+A+W R++LQ +L  LG FLQR AGKV+F+A++ L  FCV LKT  VHSK+E
Sbjct: 73  KGKAEGQRSAVWIRARLQDQLSQLGYFLQRRAGKVLFLAIIALAMFCVALKTAQVHSKVE 132

Query: 63  DLWIE 67
            LW++
Sbjct: 133 QLWVQ 137

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727459|ref|XP_003402061.1| PREDICTED: protein patched-like [Bombus terrestris]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 52/65 (80%)

Query: 3   KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
           KGKAEGQR+A+W R++LQ +L  LG FLQR AGKV+F+A++ L  FCV LKT  VHSK+E
Sbjct: 73  KGKAEGQRSAVWIRARLQDQLSQLGYFLQRRAGKVLFLAIIALAMFCVALKTAQVHSKVE 132

Query: 63  DLWIE 67
            LW++
Sbjct: 133 QLWVQ 137

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191578|gb|EFN75076.1| Protein patched [Harpegnathos saltator]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 53/64 (82%)

Query: 4  GKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIED 63
          GKAEGQR+A+W R++LQ +L  LG FLQRHAGKV+FVA+L L TFCV LK+  VHSK+E 
Sbjct: 1  GKAEGQRSAVWIRARLQDQLSQLGYFLQRHAGKVLFVAILALATFCVALKSAQVHSKVEQ 60

Query: 64 LWIE 67
          LW++
Sbjct: 61 LWVQ 64

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170033498|ref|XP_001844614.1| patched [Culex quinquefasciatus] gi|167874462|gb|EDS37845.1| patched [Culex quinquefasciatus]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/65 (58%), Positives = 52/65 (80%)

Query: 3  KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
          KGKA G+R+A++ RS  Q  L++LG  +Q+HAGKV+FVA+L+L TFCVGLK+  VHSK+ 
Sbjct: 8  KGKARGRRSAVYMRSLFQSHLYNLGCSIQKHAGKVLFVAILVLSTFCVGLKSATVHSKVH 67

Query: 63 DLWIE 67
           LWI+
Sbjct: 68 QLWIQ 72

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195382308|ref|XP_002049872.1| GJ21830 [Drosophila virilis] gi|194144669|gb|EDW61065.1| GJ21830 [Drosophila virilis]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/65 (58%), Positives = 50/65 (76%)

Query: 3   KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
           KGKA G RTA++ RS  Q  L +LG  +Q+HAGKV+FVA+L+L TFCVGLK+  +HSK+ 
Sbjct: 43  KGKARGNRTAIYLRSVFQSHLETLGSSVQKHAGKVLFVAILVLSTFCVGLKSAQIHSKVH 102

Query: 63  DLWIE 67
            LWI+
Sbjct: 103 QLWIQ 107

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195028726|ref|XP_001987227.1| GH20087 [Drosophila grimshawi] gi|193903227|gb|EDW02094.1| GH20087 [Drosophila grimshawi]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/65 (58%), Positives = 50/65 (76%)

Query: 3   KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
           KGKA G RTA++ RS  Q  L +LG  +Q+HAGKV+FVA+L+L TFCVGLK+  +HSK+ 
Sbjct: 43  KGKARGNRTAIYLRSVFQSHLETLGSSVQKHAGKVLFVAILVLSTFCVGLKSAQIHSKVH 102

Query: 63  DLWIE 67
            LWI+
Sbjct: 103 QLWIQ 107

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
FB|FBgn0003892	1286	ptc "patched" [Drosophila mela	0.928	0.050	0.584	3.3e-15
ZFIN|ZDB-GENE-980526-44	1442	ptch2 "patched 2" [Danio rerio	0.928	0.045	0.492	9.7e-12
UNIPROTKB|G3N1D5	563	G3N1D5 "Uncharacterized protei	0.928	0.115	0.476	1.2e-11
RGD|621425	608	Ptch1 "patched 1" [Rattus norv	0.928	0.106	0.476	2.2e-11
UNIPROTKB|H3BLX7	486	PTCH1 "Protein patched homolog	0.914	0.131	0.468	3.1e-11
MGI|MGI:105373	1434	Ptch1 "patched homolog 1" [Mus	0.928	0.045	0.476	4.2e-11
UNIPROTKB|Q6UY90	1434	Ptch1 "Protein Ptch1" [Rattus	0.928	0.045	0.476	4.2e-11
UNIPROTKB|Q13635	1447	PTCH1 "Protein patched homolog	0.928	0.044	0.476	4.2e-11
UNIPROTKB|F1PNE0	1449	PTCH1 "Uncharacterized protein	0.928	0.044	0.476	4.3e-11
UNIPROTKB|I3LVF2	1453	PTCH1 "Uncharacterized protein	0.928	0.044	0.476	4.3e-11

FB|FBgn0003892 ptc "patched" [Drosophila melanogaster (taxid:7227)]

 Score = 206 (77.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 38/65 (58%), Positives = 50/65 (76%)

Query:     3 KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
             KGKA G RTA++ RS  Q  L +LG  +Q+HAGKV+FVA+L+L TFCVGLK+  +HSK+ 
Sbjct:    43 KGKARGSRTAIYLRSVFQSHLETLGSSVQKHAGKVLFVAILVLSTFCVGLKSAQIHSKVH 102

Query:    63 DLWIE 67
              LWI+
Sbjct:   103 QLWIQ 107

GO:0008158 "hedgehog receptor activity" evidence=IMP;TAS

GO:0005887 "integral to plasma membrane" evidence=NAS;TAS

GO:0007224 "smoothened signaling pathway" evidence=IGI;NAS;IMP;TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0045169 "fusome" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0048477 "oogenesis" evidence=IMP

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0045879 "negative regulation of smoothened signaling pathway" evidence=IGI;TAS

GO:0048099 "anterior/posterior lineage restriction, imaginal disc" evidence=TAS

GO:0007350 "blastoderm segmentation" evidence=NAS

GO:0001746 "Bolwig's organ morphogenesis" evidence=IMP

GO:0030707 "ovarian follicle cell development" evidence=TAS

GO:0007422 "peripheral nervous system development" evidence=TAS

GO:0016021 "integral to membrane" evidence=IEA;TAS

GO:0009880 "embryonic pattern specification" evidence=TAS

GO:0007346 "regulation of mitotic cell cycle" evidence=IMP

GO:0004888 "transmembrane signaling receptor activity" evidence=NAS

GO:0048100 "wing disc anterior/posterior pattern formation" evidence=TAS

GO:0007455 "eye-antennal disc morphogenesis" evidence=IMP

GO:0016311 "dephosphorylation" evidence=TAS

GO:0006508 "proteolysis" evidence=TAS

GO:0009952 "anterior/posterior pattern specification" evidence=NAS

GO:0048103 "somatic stem cell division" evidence=TAS

GO:0042078 "germ-line stem cell division" evidence=TAS

GO:0042306 "regulation of protein import into nucleus" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0035225 "determination of genital disc primordium" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0055088 "lipid homeostasis" evidence=IMP

GO:0030228 "lipoprotein particle receptor activity" evidence=IDA

GO:0008406 "gonad development" evidence=IMP

ZFIN|ZDB-GENE-980526-44 ptch2 "patched 2" [Danio rerio (taxid:7955)]

 Score = 174 (66.3 bits), Expect = 9.7e-12, P = 9.7e-12
 Identities = 32/65 (49%), Positives = 43/65 (66%)

Query:     3 KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
             KGKA GQ+  LW R++ Q  LFSLG  +QRH GKV+F+ LL+     VGL+   + + IE
Sbjct:    51 KGKAVGQKAPLWIRARFQAFLFSLGCHIQRHCGKVLFIGLLVFGALSVGLRVAAIETDIE 110

Query:    63 DLWIE 67
              LW+E
Sbjct:   111 KLWVE 115

GO:0008158 "hedgehog receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0048635 "negative regulation of muscle organ development" evidence=IGI

GO:0010002 "cardioblast differentiation" evidence=IGI

GO:0001649 "osteoblast differentiation" evidence=IMP

GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IMP

GO:0043010 "camera-type eye development" evidence=IMP

GO:0007224 "smoothened signaling pathway" evidence=IMP

UNIPROTKB|G3N1D5 G3N1D5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 168 (64.2 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 31/65 (47%), Positives = 44/65 (67%)

Query:     3 KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
             KGKA G++  LW R+K QR LF LG ++Q++ GK + V LLI   F VGLK   + + +E
Sbjct:    54 KGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAANLETNVE 113

Query:    63 DLWIE 67
             +LW+E
Sbjct:   114 ELWVE 118

GO:0016021 "integral to membrane" evidence=IEA

RGD|621425 Ptch1 "patched 1" [Rattus norvegicus (taxid:10116)]

 Score = 166 (63.5 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 31/65 (47%), Positives = 43/65 (66%)

Query:     3 KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
             KGKA G++  LW R+K QR LF LG ++Q+  GK + V LLI   F VGLK   + + +E
Sbjct:    53 KGKATGRKAPLWLRAKFQRLLFKLGCYIQKDCGKFLVVGLLIFGAFAVGLKAANLETNVE 112

Query:    63 DLWIE 67
             +LW+E
Sbjct:   113 ELWVE 117

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=ISO

GO:0001841 "neural tube formation" evidence=ISO

GO:0001843 "neural tube closure" evidence=ISO

GO:0003007 "heart morphogenesis" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005113 "patched binding" evidence=ISO

GO:0005119 "smoothened binding" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005901 "caveola" evidence=ISO

GO:0007165 "signal transduction" evidence=ISO

GO:0007224 "smoothened signaling pathway" evidence=ISO

GO:0007346 "regulation of mitotic cell cycle" evidence=ISO

GO:0007389 "pattern specification process" evidence=ISO

GO:0007420 "brain development" evidence=ISO

GO:0008201 "heparin binding" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0008544 "epidermis development" evidence=ISO

GO:0008589 "regulation of smoothened signaling pathway" evidence=ISO

GO:0009612 "response to mechanical stimulus" evidence=IEP

GO:0009887 "organ morphogenesis" evidence=ISO

GO:0009953 "dorsal/ventral pattern formation" evidence=ISO

GO:0010157 "response to chlorate" evidence=ISO

GO:0010875 "positive regulation of cholesterol efflux" evidence=ISO

GO:0014069 "postsynaptic density" evidence=IDA

GO:0014070 "response to organic cyclic compound" evidence=IEP

GO:0015485 "cholesterol binding" evidence=ISO

GO:0016485 "protein processing" evidence=ISO

GO:0021522 "spinal cord motor neuron differentiation" evidence=ISO

GO:0021532 "neural tube patterning" evidence=ISO

GO:0021904 "dorsal/ventral neural tube patterning" evidence=ISO

GO:0021997 "neural plate axis specification" evidence=ISO

GO:0030326 "embryonic limb morphogenesis" evidence=ISO

GO:0030332 "cyclin binding" evidence=ISO

GO:0030496 "midbody" evidence=ISO

GO:0030879 "mammary gland development" evidence=ISO

GO:0032355 "response to estradiol stimulus" evidence=IEP

GO:0032403 "protein complex binding" evidence=ISO

GO:0032526 "response to retinoic acid" evidence=IEP

GO:0032880 "regulation of protein localization" evidence=ISO

GO:0035108 "limb morphogenesis" evidence=ISO

GO:0035137 "hindlimb morphogenesis" evidence=ISO

GO:0040008 "regulation of growth" evidence=ISO

GO:0040015 "negative regulation of multicellular organism growth" evidence=ISO

GO:0042127 "regulation of cell proliferation" evidence=ISO

GO:0042493 "response to drug" evidence=IEP

GO:0042593 "glucose homeostasis" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0043616 "keratinocyte proliferation" evidence=ISO

GO:0044294 "dendritic growth cone" evidence=IDA

GO:0044295 "axonal growth cone" evidence=IDA

GO:0045668 "negative regulation of osteoblast differentiation" evidence=ISO

GO:0045879 "negative regulation of smoothened signaling pathway" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=ISO

GO:0051782 "negative regulation of cell division" evidence=ISO

GO:0060037 "pharyngeal system development" evidence=ISO

GO:0060603 "mammary gland duct morphogenesis" evidence=ISO

GO:0060644 "mammary gland epithelial cell differentiation" evidence=ISO

GO:0060831 "smoothened signaling pathway involved in dorsal/ventral neural tube patterning" evidence=ISO

GO:0061005 "cell differentiation involved in kidney development" evidence=ISO

GO:0061053 "somite development" evidence=ISO

GO:0071397 "cellular response to cholesterol" evidence=ISO

GO:0072001 "renal system development" evidence=ISO

GO:0072203 "cell proliferation involved in metanephros development" evidence=ISO

GO:0072372 "primary cilium" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO

GO:0097108 "hedgehog family protein binding" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

UNIPROTKB|H3BLX7 PTCH1 "Protein patched homolog 1" [Homo sapiens (taxid:9606)]

 Score = 163 (62.4 bits), Expect = 3.1e-11, P = 3.1e-11
 Identities = 30/64 (46%), Positives = 43/64 (67%)

Query:     4 GKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIED 63
             GKA G++  LW R+K QR LF LG ++Q++ GK + V LLI   F VGLK   + + +E+
Sbjct:     1 GKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAANLETNVEE 60

Query:    64 LWIE 67
             LW+E
Sbjct:    61 LWVE 64

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:105373 Ptch1 "patched homolog 1" [Mus musculus (taxid:10090)]

 Score = 168 (64.2 bits), Expect = 4.2e-11, P = 4.2e-11
 Identities = 31/65 (47%), Positives = 44/65 (67%)

Query:     3 KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
             KGKA G++  LW R+K QR LF LG ++Q++ GK + V LLI   F VGLK   + + +E
Sbjct:    53 KGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAANLETNVE 112

Query:    63 DLWIE 67
             +LW+E
Sbjct:   113 ELWVE 117

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IMP

GO:0001841 "neural tube formation" evidence=IDA

GO:0001843 "neural tube closure" evidence=IMP

GO:0003007 "heart morphogenesis" evidence=IMP

GO:0005113 "patched binding" evidence=IDA

GO:0005119 "smoothened binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=TAS

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0005901 "caveola" evidence=ISO

GO:0007165 "signal transduction" evidence=IDA;TAS

GO:0007224 "smoothened signaling pathway" evidence=IGI;IDA

GO:0007346 "regulation of mitotic cell cycle" evidence=IMP

GO:0007389 "pattern specification process" evidence=IMP

GO:0007420 "brain development" evidence=IMP

GO:0008158 "hedgehog receptor activity" evidence=TAS

GO:0008201 "heparin binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=NAS

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0008544 "epidermis development" evidence=IMP

GO:0008589 "regulation of smoothened signaling pathway" evidence=IGI;IMP

GO:0009887 "organ morphogenesis" evidence=IMP

GO:0009953 "dorsal/ventral pattern formation" evidence=IGI

GO:0010157 "response to chlorate" evidence=IDA

GO:0010875 "positive regulation of cholesterol efflux" evidence=ISO

GO:0014069 "postsynaptic density" evidence=ISO

GO:0015485 "cholesterol binding" evidence=ISO;TAS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016485 "protein processing" evidence=IMP

GO:0021522 "spinal cord motor neuron differentiation" evidence=IGI

GO:0021532 "neural tube patterning" evidence=ISO

GO:0021904 "dorsal/ventral neural tube patterning" evidence=IMP

GO:0021997 "neural plate axis specification" evidence=IMP

GO:0030326 "embryonic limb morphogenesis" evidence=IGI;IMP

GO:0030332 "cyclin binding" evidence=ISO;IPI

GO:0030496 "midbody" evidence=IDA

GO:0030879 "mammary gland development" evidence=IMP

GO:0032403 "protein complex binding" evidence=IDA

GO:0032880 "regulation of protein localization" evidence=IDA;IMP

GO:0035108 "limb morphogenesis" evidence=ISO

GO:0035137 "hindlimb morphogenesis" evidence=IMP

GO:0040008 "regulation of growth" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0042593 "glucose homeostasis" evidence=IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0043616 "keratinocyte proliferation" evidence=IMP

GO:0044294 "dendritic growth cone" evidence=ISO

GO:0044295 "axonal growth cone" evidence=ISO

GO:0045668 "negative regulation of osteoblast differentiation" evidence=ISO

GO:0045879 "negative regulation of smoothened signaling pathway" evidence=IGI;NAS;IMP

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IMP

GO:0051782 "negative regulation of cell division" evidence=IMP

GO:0060037 "pharyngeal system development" evidence=ISO

GO:0060603 "mammary gland duct morphogenesis" evidence=IMP

GO:0060644 "mammary gland epithelial cell differentiation" evidence=IMP

GO:0060831 "smoothened signaling pathway involved in dorsal/ventral neural tube patterning" evidence=IMP

GO:0061005 "cell differentiation involved in kidney development" evidence=IGI

GO:0061053 "somite development" evidence=ISO;IMP

GO:0071397 "cellular response to cholesterol" evidence=ISO

GO:0072203 "cell proliferation involved in metanephros development" evidence=IMP

GO:0072372 "primary cilium" evidence=IDA

GO:0072661 "protein targeting to plasma membrane" evidence=ISO

GO:0097108 "hedgehog family protein binding" evidence=ISO

UNIPROTKB|Q6UY90 Ptch1 "Protein Ptch1" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 4.2e-11, P = 4.2e-11
 Identities = 31/65 (47%), Positives = 44/65 (67%)

Query:     3 KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
             KGKA G++  LW R+K QR LF LG ++Q++ GK + V LLI   F VGLK   + + +E
Sbjct:    53 KGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAANLETNVE 112

Query:    63 DLWIE 67
             +LW+E
Sbjct:   113 ELWVE 117

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0003007 "heart morphogenesis" evidence=IEA

GO:0005113 "patched binding" evidence=IEA

GO:0005119 "smoothened binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=ISS

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0008158 "hedgehog receptor activity" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0008544 "epidermis development" evidence=IEA

GO:0008589 "regulation of smoothened signaling pathway" evidence=ISS

GO:0009887 "organ morphogenesis" evidence=ISS

GO:0009953 "dorsal/ventral pattern formation" evidence=ISS

GO:0010157 "response to chlorate" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0015485 "cholesterol binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016485 "protein processing" evidence=ISS

GO:0021904 "dorsal/ventral neural tube patterning" evidence=IEA

GO:0021997 "neural plate axis specification" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=ISS

GO:0030332 "cyclin binding" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0035137 "hindlimb morphogenesis" evidence=IEA

GO:0040015 "negative regulation of multicellular organism growth" evidence=ISS

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043616 "keratinocyte proliferation" evidence=IEA

GO:0045668 "negative regulation of osteoblast differentiation" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IEA

GO:0051782 "negative regulation of cell division" evidence=IEA

GO:0060037 "pharyngeal system development" evidence=IEA

GO:0060603 "mammary gland duct morphogenesis" evidence=IEA

GO:0060644 "mammary gland epithelial cell differentiation" evidence=IEA

GO:0061005 "cell differentiation involved in kidney development" evidence=IEA

GO:0061053 "somite development" evidence=IEA

GO:0071397 "cellular response to cholesterol" evidence=IEA

GO:0072203 "cell proliferation involved in metanephros development" evidence=IEA

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0097108 "hedgehog family protein binding" evidence=IEA

UNIPROTKB|Q13635 PTCH1 "Protein patched homolog 1" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 4.2e-11, P = 4.2e-11
 Identities = 31/65 (47%), Positives = 44/65 (67%)

Query:     3 KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
             KGKA G++  LW R+K QR LF LG ++Q++ GK + V LLI   F VGLK   + + +E
Sbjct:    67 KGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAANLETNVE 126

Query:    63 DLWIE 67
             +LW+E
Sbjct:   127 ELWVE 131

GO:0008158 "hedgehog receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0008544 "epidermis development" evidence=IEA

GO:0010157 "response to chlorate" evidence=IEA

GO:0021904 "dorsal/ventral neural tube patterning" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0035137 "hindlimb morphogenesis" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0043616 "keratinocyte proliferation" evidence=IEA

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IEA

GO:0051782 "negative regulation of cell division" evidence=IEA

GO:0060603 "mammary gland duct morphogenesis" evidence=IEA

GO:0060644 "mammary gland epithelial cell differentiation" evidence=IEA

GO:0061005 "cell differentiation involved in kidney development" evidence=IEA

GO:0072203 "cell proliferation involved in metanephros development" evidence=IEA

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0003007 "heart morphogenesis" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEP;ISS

GO:0009887 "organ morphogenesis" evidence=ISS

GO:0009953 "dorsal/ventral pattern formation" evidence=ISS

GO:0016485 "protein processing" evidence=ISS

GO:0030326 "embryonic limb morphogenesis" evidence=ISS

GO:0040015 "negative regulation of multicellular organism growth" evidence=ISS

GO:0008589 "regulation of smoothened signaling pathway" evidence=ISS

GO:0072001 "renal system development" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005113 "patched binding" evidence=IPI

GO:0097108 "hedgehog family protein binding" evidence=IPI

GO:0005119 "smoothened binding" evidence=IPI

GO:0030332 "cyclin binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0045668 "negative regulation of osteoblast differentiation" evidence=IMP

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0045879 "negative regulation of smoothened signaling pathway" evidence=ISS;TAS

GO:0071397 "cellular response to cholesterol" evidence=ISS;IMP

GO:0010875 "positive regulation of cholesterol efflux" evidence=IDA

GO:0015485 "cholesterol binding" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0072661 "protein targeting to plasma membrane" evidence=IDA

GO:0005901 "caveola" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0021997 "neural plate axis specification" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0060037 "pharyngeal system development" evidence=IMP

GO:0021532 "neural tube patterning" evidence=IMP

GO:0061053 "somite development" evidence=IMP

GO:0035108 "limb morphogenesis" evidence=IMP

UNIPROTKB|F1PNE0 PTCH1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 168 (64.2 bits), Expect = 4.3e-11, P = 4.3e-11
 Identities = 31/65 (47%), Positives = 44/65 (67%)

Query:     3 KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
             KGKA G++  LW R+K QR LF LG ++Q++ GK + V LLI   F VGLK   + + +E
Sbjct:    65 KGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAANLETNVE 124

Query:    63 DLWIE 67
             +LW+E
Sbjct:   125 ELWVE 129

GO:0016021 "integral to membrane" evidence=IEA

GO:0008158 "hedgehog receptor activity" evidence=IEA

UNIPROTKB|I3LVF2 PTCH1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 168 (64.2 bits), Expect = 4.3e-11, P = 4.3e-11
 Identities = 31/65 (47%), Positives = 44/65 (67%)

Query:     3 KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
             KGKA G++  LW R+K QR LF LG ++Q++ GK + V LLI   F VGLK   + + +E
Sbjct:    69 KGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAANLETNVE 128

Query:    63 DLWIE 67
             +LW+E
Sbjct:   129 ELWVE 133

GO:0097108 "hedgehog family protein binding" evidence=IEA

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0072203 "cell proliferation involved in metanephros development" evidence=IEA

GO:0071397 "cellular response to cholesterol" evidence=IEA

GO:0061053 "somite development" evidence=IEA

GO:0061005 "cell differentiation involved in kidney development" evidence=IEA

GO:0060644 "mammary gland epithelial cell differentiation" evidence=IEA

GO:0060603 "mammary gland duct morphogenesis" evidence=IEA

GO:0060037 "pharyngeal system development" evidence=IEA

GO:0051782 "negative regulation of cell division" evidence=IEA

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0045668 "negative regulation of osteoblast differentiation" evidence=IEA

GO:0043616 "keratinocyte proliferation" evidence=IEA

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0040015 "negative regulation of multicellular organism growth" evidence=IEA

GO:0035137 "hindlimb morphogenesis" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0030332 "cyclin binding" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0021997 "neural plate axis specification" evidence=IEA

GO:0021904 "dorsal/ventral neural tube patterning" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0015485 "cholesterol binding" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0010157 "response to chlorate" evidence=IEA

GO:0008589 "regulation of smoothened signaling pathway" evidence=IEA

GO:0008544 "epidermis development" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005119 "smoothened binding" evidence=IEA

GO:0005113 "patched binding" evidence=IEA

GO:0003007 "heart morphogenesis" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008158 "hedgehog receptor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P18502	PTC_DROME	No assigned EC number	0.5846	0.9285	0.0505	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	70
TIGR00918	1145	TIGR00918, 2A060602, The Eukaryotic (Putative) Ste	4e-24

>gnl|CDD|233185 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter (EST) Family

 Score = 93.0 bits (231), Expect = 4e-24
 Identities = 33/65 (50%), Positives = 46/65 (70%)

Query: 3  KGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIE 62
          KGKA G+R  LW R+K QR LF+LG ++Q+H GKV+FV LL+   F VGL+   + + +E
Sbjct: 27 KGKATGRRAPLWLRAKFQRLLFTLGCYIQKHCGKVLFVGLLVFSAFAVGLRAANIETNVE 86

Query: 63 DLWIE 67
           LW+E
Sbjct: 87 QLWVE 91

Length = 1145

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	70
TIGR00918	1145	2A060602 The Eukaryotic (Putative) Sterol Transpor	99.94
KOG1935|consensus	1143		99.9
TIGR00917	1204	2A060601 Niemann-Pick C type protein family. The m	99.42
KOG1933|consensus	1201		98.97
TIGR00921	719	2A067 The (Largely Archaeal Putative) Hydrophobe/A	96.25
KOG1934|consensus	868		95.04
TIGR00833	910	actII Transport protein. Characterized members of	94.18
TIGR03480	862	HpnN hopanoid biosynthesis associated RND transpor	94.12
COG1033	727	Predicted exporters of the RND superfamily [Genera	93.67
COG1033	727	Predicted exporters of the RND superfamily [Genera	93.32
TIGR00921	719	2A067 The (Largely Archaeal Putative) Hydrophobe/A	93.01
TIGR03480	862	HpnN hopanoid biosynthesis associated RND transpor	91.53
TIGR00920	886	2A060605 3-hydroxy-3-methylglutaryl-coenzyme A red	89.14
PF05957	94	DUF883: Bacterial protein of unknown function (DUF	82.01

>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family

Probab=99.94  E-value=5.4e-28  Score=200.73  Aligned_cols=70  Identities=47%  Similarity=0.935  Sum_probs=68.4

Q ss_pred             CCcccccccchhHHHHHHHHHHHHHHcHHHHhhhhHHHHHHHHHHHHHHhhhhceeeeccCccccccCCC
Q psy674            1 MFKGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIEDLWIEGRH   70 (70)
Q Consensus         1 i~~g~a~G~r~al~~~~~lq~~f~~lG~~var~p~~vi~~~ll~~~~l~~Gl~~~~iETdp~kLWVsp~~   70 (70)
                      |+||||+|||+|||+|+++|++|+++|++|||||++||+++++++++||+||++++||||||||||||+.
T Consensus        25 ~~~g~a~g~~~~l~~~~~~q~~~~~~G~~~~~~p~~vl~~~~~~~~~~~~Gl~~~~ietdp~~LWv~~~s   94 (1145)
T TIGR00918        25 IDKGKATGRRAPLWLRAKFQRLLFTLGCYIQKHCGKVLFVGLLVFSAFAVGLRAANIETNVEQLWVEVGG   94 (1145)
T ss_pred             hhhhhccCccccHHHHHHHHHHHHHHHHHHHHCchhhhhHHHHHHHHHHhhHhheEEEecHHHhccCCCC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999973

>KOG1935|consensus

Probab=99.90  E-value=9.8e-25  Score=178.65  Aligned_cols=69  Identities=51%  Similarity=0.904  Sum_probs=67.9

Q ss_pred             CCcccccccchhHHHHHHHHHHHHHHcHHHHhhhhHHHHHHHHHHHHHHhhhhceeeeccCccccccCC
Q psy674            1 MFKGKAEGQRTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIEDLWIEGR   69 (70)
Q Consensus         1 i~~g~a~G~r~al~~~~~lq~~f~~lG~~var~p~~vi~~~ll~~~~l~~Gl~~~~iETdp~kLWVsp~   69 (70)
                      |+||||+|||+|||+|+++|+++|+|||++|||+|+|||++++++++||+||+.++||||.|||||+.|
T Consensus        41 i~kGKA~g~r~al~lRa~fQ~lLf~lGc~vqr~agkvlfv~~lif~~~~~GLr~a~IeT~~~qLWV~~G  109 (1143)
T KOG1935|consen   41 IKKGKATGNRAALYLRAFFQLLLFRLGCFVQRHAGKVLFVGLLIFGAFCVGLRHATIETDLVQLWVEEG  109 (1143)
T ss_pred             HhhccccCchhhHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHHHhhhhheeeeccHHHHHHHhc
Confidence            789999999999999999999999999999999999999999999999999999999999999999986

>TIGR00917 2A060601 Niemann-Pick C type protein family

Probab=99.42  E-value=2e-13  Score=114.48  Aligned_cols=60  Identities=22%  Similarity=0.356  Sum_probs=57.4

Q ss_pred             hhHHHHHHHHHHHHHHcHHHHhhhhHHHHHHHHHHHHHHhhhhceeeeccCccccccCCC
Q psy674           11 TALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIEDLWIEGRH   70 (70)
Q Consensus        11 ~al~~~~~lq~~f~~lG~~var~p~~vi~~~ll~~~~l~~Gl~~~~iETdp~kLWVsp~~   70 (70)
                      ..-+++.+++++|+++|.+++|||+++|+++++++++||+|+.++++||||++||++|+.
T Consensus       301 ~~~~~~~~l~~~F~~~G~~var~P~~vi~isllv~~~l~~Gl~~~~vetDpv~Lw~~~~s  360 (1204)
T TIGR00917       301 QLATVEGHLARFFTKYGIWVARNPGLVLCLSVSVVLLLGVGLIFFEVETDPVKLWVAPGS  360 (1204)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhCcccCChhhhcCCCCc
Confidence            477899999999999999999999999999999999999999999999999999999973

The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.

>KOG1933|consensus

Probab=98.97  E-value=3.5e-10  Score=95.71  Aligned_cols=56  Identities=23%  Similarity=0.378  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHcHHHHhhhhHHHHHHHHHHHHHHhhhhceeeeccCccccccCC
Q psy674           14 WFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIEDLWIEGR   69 (70)
Q Consensus        14 ~~~~~lq~~f~~lG~~var~p~~vi~~~ll~~~~l~~Gl~~~~iETdp~kLWVsp~   69 (70)
                      +.+++++.+|.++|.|+++||.+++++++.+++.||.|+.+++++|||++||++|+
T Consensus       282 ~~~~~l~~~F~~~g~~~~~~P~~~~~~~~~~~i~~s~gli~~~v~T~pv~lW~~~~  337 (1201)
T KOG1933|consen  282 STETFLEVFFRRWGTFCARNPLIVLYIILFVVIALSSGLIYFMVTTDPVDLWSLAR  337 (1201)
T ss_pred             hHHHHHHHHhhhcccceecCchhhhHHHHHHHHHhccchhheeeeccchhhccCCc
Confidence            68899999999999999999999999999999999999999999999999999986

>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family

Probab=96.25  E-value=0.0067  Score=47.74  Aligned_cols=49  Identities=22%  Similarity=0.165  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHcHHHHhhhhHHHHHHHHHHHHHHhhhhceeeeccCcccc
Q psy674           17 SKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIEDLW   65 (70)
Q Consensus        17 ~~lq~~f~~lG~~var~p~~vi~~~ll~~~~l~~Gl~~~~iETdp~kLW   65 (70)
                      +.+++.+.++|.++.|||+.++.+.++++++..+|..++++|.|+.++.
T Consensus       366 ~~~~~~l~~~~~~~~r~~~~vl~v~lll~~~~~~~~~~l~~~~d~~~~~  414 (719)
T TIGR00921       366 SEIEEELSKVLSITVRHPVPALVAALIITGLGLYGAAGIKPEVNIEKFI  414 (719)
T ss_pred             hHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhccCCCcccChhhcC
Confidence            3567789999999999999999999999999999999999999998763

Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.

>KOG1934|consensus

Probab=95.04  E-value=0.029  Score=47.15  Aligned_cols=53  Identities=19%  Similarity=0.265  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHcHHHHhhhhHHHHHHHHHHHHHHhhhhceeeeccCccccc
Q psy674           14 WFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIEDLWI   66 (70)
Q Consensus        14 ~~~~~lq~~f~~lG~~var~p~~vi~~~ll~~~~l~~Gl~~~~iETdp~kLWV   66 (70)
                      ++......+|+++|.+++|||+..|.+.++.++.|+.|+..+..|.|+-.+.=
T Consensus         4 ~~~r~~~~~f~~~g~~v~~~p~~~ii~~l~lt~~~s~g~~~~~~~~d~~~~yt   56 (868)
T KOG1934|consen    4 RLERILKVLFRKYGLFVARYPWFFIIIPLLLTAVLSVGILPLLTEDDARYLYT   56 (868)
T ss_pred             hHHHHHHHHHHHhCceeeecchHHHHHHHHHHHHHhcCchhheecCCcceeeC
Confidence            34556778899999999999999999999999999999988899999877643

>TIGR00833 actII Transport protein

Probab=94.18  E-value=0.073  Score=44.17  Aligned_cols=46  Identities=15%  Similarity=0.080  Sum_probs=40.7

Q ss_pred             HHHHHHHHcHHHHhhhhHHHHHHHHHHHHHHhhhhceeeeccCccc
Q psy674           19 LQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIEDL   64 (70)
Q Consensus        19 lq~~f~~lG~~var~p~~vi~~~ll~~~~l~~Gl~~~~iETdp~kL   64 (70)
                      .+..+.+++.++.|||+.++.+++++++++.++..++++|.|+.+.
T Consensus       346 ~~~~~~~l~~~v~r~p~~vl~v~~~ll~~~~~~~~~l~~~~~~~~~  391 (910)
T TIGR00833       346 IRFIWRRLGTAVVRRPWPILVTTLIISGVSLLALPLIRTGYDDEKM  391 (910)
T ss_pred             HhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCcCCCcHhh
Confidence            4457889999999999999999999999999999999999887663

Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.

>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN

Probab=94.12  E-value=0.063  Score=43.96  Aligned_cols=42  Identities=31%  Similarity=0.354  Sum_probs=36.5

Q ss_pred             HHHHcHHHHhhhhHHHHHHHHHHHHHHh-hhhceeeeccCccc
Q psy674           23 LFSLGRFLQRHAGKVIFVALLILLTFCV-GLKTHVVHSKIEDL   64 (70)
Q Consensus        23 f~~lG~~var~p~~vi~~~ll~~~~l~~-Gl~~~~iETdp~kL   64 (70)
                      |.++-.++.|||+.++.++++++++++. +..+++++||..+|
T Consensus         2 ~~~~~~~~~~~~~~vl~~~~~lt~~~~~~~~~~l~i~td~~~L   44 (862)
T TIGR03480         2 LVRLVGFCARHAWWVLAIALLLTALSVIYTVTNLSVNTDTSDL   44 (862)
T ss_pred             hHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhceecCCHHHh
Confidence            4567789999999999988888888885 78899999999887

The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.

>COG1033 Predicted exporters of the RND superfamily [General function prediction only]

Probab=93.67  E-value=0.11  Score=43.00  Aligned_cols=52  Identities=25%  Similarity=0.447  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHcHHHHhhhhHHHHHHHHHHHHHHhhhhceeeeccCccccccC
Q psy674           16 RSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIEDLWIEG   68 (70)
Q Consensus        16 ~~~lq~~f~~lG~~var~p~~vi~~~ll~~~~l~~Gl~~~~iETdp~kLWVsp   68 (70)
                      .+.+.+.+.+.+....|||..++.+.+++++..-.|..+.++|+|.+| -.+|
T Consensus       365 ~~~~~~~l~~i~~~~~~~~~~~L~vali~~~~~~yg~~~v~~~~d~~k-~~p~  416 (727)
T COG1033         365 KGKLEKRLSKIAKIIARHPVTVLVVALIIVGVSLYGASKVKIETDIEK-YLPQ  416 (727)
T ss_pred             chhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHhhhhhcccccchHh-hcCC
Confidence            356888999999999999999999999999999999999999999988 4443

>COG1033 Predicted exporters of the RND superfamily [General function prediction only]

Probab=93.32  E-value=0.13  Score=42.72  Aligned_cols=41  Identities=24%  Similarity=0.374  Sum_probs=38.4

Q ss_pred             HHHHcHHHHhhhhHHHHHHHHHHHHHHhhhhceeeeccCcc
Q psy674           23 LFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIED   63 (70)
Q Consensus        23 f~~lG~~var~p~~vi~~~ll~~~~l~~Gl~~~~iETdp~k   63 (70)
                      |.+++.++++||+.++++.++++.+...|.+++++++|-++
T Consensus         2 ~~kl~~fi~~~r~~i~~~~~~l~i~~~~~a~~l~~~s~~~~   42 (727)
T COG1033           2 FEKLARFIIRRRKSIILIFLLLTILSAFGAQNLEFDSGTET   42 (727)
T ss_pred             hHHHHHHHHhCccHHHHHHHHHHHHHHHhhheeeecCCccc
Confidence            78999999999999999999999999999999999999544

>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family

Probab=93.01  E-value=0.074  Score=41.93  Aligned_cols=33  Identities=27%  Similarity=0.318  Sum_probs=31.2

Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhceeeeccCccc
Q psy674           32 RHAGKVIFVALLILLTFCVGLKTHVVHSKIEDL   64 (70)
Q Consensus        32 r~p~~vi~~~ll~~~~l~~Gl~~~~iETdp~kL   64 (70)
                      |||++++.+.+++++++..|+.++++++|++++
T Consensus         2 ~~~~~v~~~~~~l~~~~~~g~~~l~~~~~~~~~   34 (719)
T TIGR00921         2 RFRTAIILVFLALLILSAYGAQHLNVESDTEKQ   34 (719)
T ss_pred             CCchhhHHHHHHHHHHHHHhcccceeccChhhh
Confidence            799999999999999999999999999999864

Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.

>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN

Probab=91.53  E-value=0.27  Score=40.38  Aligned_cols=45  Identities=24%  Similarity=0.205  Sum_probs=39.7

Q ss_pred             HHHHHHcHHHHhhhhHHHHHHHHHHHHHHhhhhceeeeccCcccc
Q psy674           21 RELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKIEDLW   65 (70)
Q Consensus        21 ~~f~~lG~~var~p~~vi~~~ll~~~~l~~Gl~~~~iETdp~kLW   65 (70)
                      +++.+++.++.|||..++.++++++++...++...++|.||.++.
T Consensus       435 ~~~~~~~~~~~~~~~~v~~~~l~l~~~~~~~~~~~~~~~~~~~~~  479 (862)
T TIGR03480       435 ATLAPLDAFLRRHRRPVLGVTLILGIAALALLPQLRFDFNPLNLQ  479 (862)
T ss_pred             hhHHHHHHHHHhccHHHHHHHHHHHHHHHHHhccCCCCCCchhcc
Confidence            467788999999999999999999999999999999999986654

The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.

>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase

Probab=89.14  E-value=0.2  Score=42.56  Aligned_cols=28  Identities=29%  Similarity=0.430  Sum_probs=23.0

Q ss_pred             HHHHHHHHcHHHHhhhhHHHHHHHHHHH
Q psy674           19 LQRELFSLGRFLQRHAGKVIFVALLILL   46 (70)
Q Consensus        19 lq~~f~~lG~~var~p~~vi~~~ll~~~   46 (70)
                      +.++|+..|.||+.|||=||.-.+-+++
T Consensus         2 ~~rlf~~hg~fcashpweviv~~~tlt~   29 (886)
T TIGR00920         2 LSRLFRAHGQFCASHPWEVIVATLTLTI   29 (886)
T ss_pred             chhHhhhhcchhcCCCceehhhHHHHHH
Confidence            4678999999999999999876655544

>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD

Probab=82.01  E-value=6.4  Score=24.00  Aligned_cols=41  Identities=7%  Similarity=-0.003  Sum_probs=31.4

Q ss_pred             chhHHHHHHHHHHHHHHcHHHHhhhhHHHHHHHHHHHHHHh
Q psy674           10 RTALWFRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCV   50 (70)
Q Consensus        10 r~al~~~~~lq~~f~~lG~~var~p~~vi~~~ll~~~~l~~   50 (70)
                      ..+--++...+..-.....+|..||+..+.+++.+=++++.
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~V~e~P~~svgiAagvG~llG~   89 (94)
T PF05957_consen   49 DAADQAREQAREAAEQTEDYVRENPWQSVGIAAGVGFLLGL   89 (94)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence            33445667788888999999999999999888776555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	70
3ne5_A	1054	Cation efflux system protein CUSA; transmembrane h	85.67
4dx5_A	1057	Acriflavine resistance protein B; multidrug efflux	83.64
2v50_A	1052	Multidrug resistance protein MEXB; DDM, RND, membr	83.28

>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A

Probab=85.67  E-value=0.77  Score=36.99  Aligned_cols=45  Identities=20%  Similarity=0.044  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHcHHHHhhhhHHHHHHHHHHHHHHhhhhceeeec
Q psy674           15 FRSKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHS   59 (70)
Q Consensus        15 ~~~~lq~~f~~lG~~var~p~~vi~~~ll~~~~l~~Gl~~~~iET   59 (70)
                      +..++++.+.++..++-|||+.++.++++++++..+++.++..|-
T Consensus       524 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~f  568 (1054)
T 3ne5_A          524 LNRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEF  568 (1054)
T ss_dssp             CHHHHHHHHHHHHHHHTSSTHHHHHHHHHHHHHTHHHHTTCCBCS
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCceE
Confidence            345678899999999999999999999888887777777766653

>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...

Probab=83.64  E-value=1.7  Score=34.99  Aligned_cols=42  Identities=12%  Similarity=0.090  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHcHHHHhhhhHHHHHHHHHHHHHHhhhhceeee
Q psy674           17 SKLQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVH   58 (70)
Q Consensus        17 ~~lq~~f~~lG~~var~p~~vi~~~ll~~~~l~~Gl~~~~iE   58 (70)
                      .++++.+.++..++-|||+.++.++++++++...++..+..|
T Consensus       521 ~~~~~~y~~~l~~~lr~~~~~~~~~~~~l~~~~~~~~~l~~~  562 (1057)
T 4dx5_A          521 EKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSS  562 (1057)
T ss_dssp             HHHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHHSCBC
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            345678889999999999999999988888777766665554

>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}

Probab=83.28  E-value=1.6  Score=35.34  Aligned_cols=43  Identities=5%  Similarity=-0.089  Sum_probs=33.7

Q ss_pred             HHHHHHHHcHHHHhhhhHHHHHHHHHHHHHHhhhhceeeeccC
Q psy674           19 LQRELFSLGRFLQRHAGKVIFVALLILLTFCVGLKTHVVHSKI   61 (70)
Q Consensus        19 lq~~f~~lG~~var~p~~vi~~~ll~~~~l~~Gl~~~~iETdp   61 (70)
                      +.+.+.++..++-|||+.++.+++++++++.+++.++..|-.|
T Consensus       523 ~~~~y~~~l~~~l~~~~~~l~~~~~l~~~~~~~~~~l~~~f~P  565 (1052)
T 2v50_A          523 TTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLP  565 (1052)
T ss_dssp             HHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHTSCBCSSC
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccCC
Confidence            5566889999999999999999888877766676666665444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00