Psyllid ID: psy6754

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------8
Protein Sequence
MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAADSPSTMMSWQGDRDIMIDR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccEEEccHHHHHHHcccccEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHEEEEEccccEEEccHHHHHHHccccccccccccccccccc
Coil and Loop (DISEMBL)
MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIradptqfiqihgrpckihldpsvalaadspstmmswqgdrdimidr
Flexible Loop (DISEMBL)
mwhearkqekkirglmvdykrraerrRDYYEKIRADPTQFIQIHGRPCKIHLDPSVAlaadspstmmswqgdrdimidr
Low Complexity Region (SEG)
MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAADSPSTMMSWQGDRDIMIDR
Disordered region (IsUnstruct)
**************LMVDYK****RRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVAL*********************
Disordered Region (DISOPRED)
***************************************FIQIHGRPCKIHLDPSVALAADSPSTMMSWQGDR*IMID*
Disordered Region (DISEMBL)
**********KIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAADSPSTMMSWQGDRDIMIDR
Disordered Region (DISPRO)
*WHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAADSPSTMMSWQGDRD*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAADSPSTMMSWQGDRDIMIDR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	79	2.2.26 [Sep-21-2011]
Q8N2M8	674	CLK4-associating serine/a	yes	N/A	1.0	0.117	0.721	3e-31
A0JNI5	670	CLK4-associating serine/a	yes	N/A	1.0	0.117	0.721	3e-31
Q5HZB6	668	CLK4-associating serine/a	yes	N/A	1.0	0.118	0.721	4e-31
Q8CFC7	668	CLK4-associating serine/a	yes	N/A	1.0	0.118	0.721	5e-31

>sp|Q8N2M8|CLASR_HUMAN CLK4-associating serine/arginine rich protein OS=Homo sapiens GN=CLASRP PE=1 SV=4

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 69/79 (87%)

Query: 1  MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
          MWHEARK E+K+RG+MVDYK+RAERRR+YYEKI+ DP QF+Q+HGR CK+HLD +VALAA
Sbjct: 1  MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAA 60

Query: 61 DSPSTMMSWQGDRDIMIDR 79
          +SP  MM WQGD + MIDR
Sbjct: 61 ESPVNMMPWQGDTNNMIDR 79

Probably functions as an alternative splicing regulator. May regulate the mRNA splicing of genes such as CLK1. May act by regulating members of the CLK kinase family.
Homo sapiens (taxid: 9606)

>sp|A0JNI5|CLASR_BOVIN CLK4-associating serine/arginine rich protein OS=Bos taurus GN=CLASRP PE=2 SV=1

 Score =  133 bits (334), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 69/79 (87%)

Query: 1  MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
          MWHEARK E+K+RG+MVDYK+RAERRR+YYEKI+ DP QF+Q+HGR CK+HLD +VALAA
Sbjct: 1  MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAA 60

Query: 61 DSPSTMMSWQGDRDIMIDR 79
          +SP  MM WQGD + MIDR
Sbjct: 61 ESPVNMMPWQGDTNNMIDR 79

Probably functions as an alternative splicing regulator. May regulate the mRNA splicing of genes such as CLK1. May act by regulating members of the CLK kinase family.

Bos taurus (taxid: 9913)

>sp|Q5HZB6|CLASR_RAT CLK4-associating serine/arginine rich protein OS=Rattus norvegicus GN=Clasrp PE=2 SV=2

 Score =  133 bits (334), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 69/79 (87%)

Query: 1  MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
          MWHEARK E+K+RG+MVDYK+RAERRR+YYEKI+ DP QF+Q+HGR CK+HLD +VALAA
Sbjct: 1  MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAA 60

Query: 61 DSPSTMMSWQGDRDIMIDR 79
          +SP  MM WQGD + MIDR
Sbjct: 61 ESPVNMMPWQGDTNNMIDR 79

Probably functions as an alternative splicing regulator. May regulate the mRNA splicing of genes such as CLK1. May act by regulating members of the CLK kinase family.

Rattus norvegicus (taxid: 10116)

>sp|Q8CFC7|CLASR_MOUSE CLK4-associating serine/arginine rich protein OS=Mus musculus GN=Clasrp PE=1 SV=3

 Score =  132 bits (333), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 69/79 (87%)

Query: 1  MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
          MWHEARK E+K+RG+MVDYK+RAERRR+YYEKI+ DP QF+Q+HGR CK+HLD +VALAA
Sbjct: 1  MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAA 60

Query: 61 DSPSTMMSWQGDRDIMIDR 79
          +SP  MM WQGD + MIDR
Sbjct: 61 ESPVNMMPWQGDTNNMIDR 79

Probably functions as an alternative splicing regulator. May regulate the mRNA splicing of genes such as CLK1. May act by regulating members of the CLK kinase family.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
193697713	705	PREDICTED: hypothetical protein LOC10016	1.0	0.112	0.772	1e-33
242025082	632	conserved hypothetical protein [Pediculu	1.0	0.125	0.784	1e-32
291231305	663	PREDICTED: hypothetical protein [Saccogl	1.0	0.119	0.746	6e-31
347968188	1180	AGAP002614-PA [Anopheles gambiae str. PE	1.0	0.066	0.721	2e-30
126328879	649	PREDICTED: CLK4-associating serine/argin	1.0	0.121	0.721	7e-30
444730723	646	CLK4-associating serine/arginine rich pr	1.0	0.122	0.721	8e-30
37183006	594	SWAP2 [Homo sapiens] gi|119577723|gb|EAW	1.0	0.132	0.721	1e-29
440902282	633	Splicing factor, arginine/serine-rich 16	1.0	0.124	0.721	1e-29
410982800	617	PREDICTED: LOW QUALITY PROTEIN: CLK4-ass	1.0	0.128	0.721	1e-29
426389158	674	PREDICTED: CLK4-associating serine/argin	1.0	0.117	0.721	1e-29

>gi|193697713|ref|XP_001944113.1| PREDICTED: hypothetical protein LOC100166686 isoform 1 [Acyrthosiphon pisum] gi|328723702|ref|XP_003247923.1| PREDICTED: hypothetical protein LOC100166686 isoform 2 [Acyrthosiphon pisum]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 61/79 (77%), Positives = 75/79 (94%)

Query: 1  MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
          MWHEARKQEKKIRGL+VDY+RRA+RR+DYYEKI+ADPTQF+Q+HGR CKIH+DP +A+AA
Sbjct: 1  MWHEARKQEKKIRGLLVDYQRRAQRRKDYYEKIKADPTQFLQLHGRQCKIHIDPGIAIAA 60

Query: 61 DSPSTMMSWQGDRDIMIDR 79
          +SP+TMM WQG+ +IMIDR
Sbjct: 61 NSPATMMPWQGNEEIMIDR 79

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242025082|ref|XP_002432955.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212518464|gb|EEB20217.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 62/79 (78%), Positives = 72/79 (91%)

Query: 1  MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
          MWHEARKQEKKIRG+MVDY++RAERRRD+YEK +ADPTQF+Q+HGRPCKIHLDP+VA+A 
Sbjct: 1  MWHEARKQEKKIRGMMVDYRKRAERRRDFYEKFKADPTQFLQLHGRPCKIHLDPAVAVAG 60

Query: 61 DSPSTMMSWQGDRDIMIDR 79
          DS S MM WQG  DI+IDR
Sbjct: 61 DSASVMMPWQGHPDILIDR 79

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291231305|ref|XP_002735605.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 72/79 (91%)

Query: 1  MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
          MWHEARKQE+K+RG+MVDYK+RAERRR+YYEKI+ DPTQFI++HGRPCKI+LDP+VA+AA
Sbjct: 1  MWHEARKQERKLRGMMVDYKKRAERRREYYEKIKLDPTQFIRLHGRPCKINLDPAVAMAA 60

Query: 61 DSPSTMMSWQGDRDIMIDR 79
          + P TMM WQGD   +IDR
Sbjct: 61 EGPGTMMPWQGDAHNLIDR 79

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|347968188|ref|XP_312321.5| AGAP002614-PA [Anopheles gambiae str. PEST] gi|333468122|gb|EAA08091.6| AGAP002614-PA [Anopheles gambiae str. PEST]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 72/79 (91%)

Query: 1  MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
          MWHEARKQEKKIRG++VDY++RAERR+D+YE+I+ADPTQF+Q+HGR CKIHLD SVA AA
Sbjct: 1  MWHEARKQEKKIRGMLVDYRKRAERRQDFYERIKADPTQFLQVHGRKCKIHLDASVATAA 60

Query: 61 DSPSTMMSWQGDRDIMIDR 79
          ++P+ MM WQG +D +IDR
Sbjct: 61 ENPAIMMPWQGQKDNLIDR 79

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|126328879|ref|XP_001375303.1| PREDICTED: CLK4-associating serine/arginine rich protein-like [Monodelphis domestica]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 69/79 (87%)

Query: 1  MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
          MWHEARK E+K+RG+MVDYK+RAERRR+YYEKI+ DP QF+Q+HGR CK+HLD +VALAA
Sbjct: 1  MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAA 60

Query: 61 DSPSTMMSWQGDRDIMIDR 79
          +SP  MM WQGD + MIDR
Sbjct: 61 ESPVNMMPWQGDTNTMIDR 79

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|444730723|gb|ELW71097.1| CLK4-associating serine/arginine rich protein [Tupaia chinensis]

 Score =  134 bits (336), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 69/79 (87%)

Query: 1  MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
          MWHEARK E+K+RG+MVDYK+RAERRR+YYEKI+ DP QF+Q+HGR CK+HLD +VALAA
Sbjct: 1  MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAA 60

Query: 61 DSPSTMMSWQGDRDIMIDR 79
          +SP  MM WQGD + MIDR
Sbjct: 61 ESPVNMMPWQGDTNNMIDR 79

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|37183006|gb|AAQ89303.1| SWAP2 [Homo sapiens] gi|119577723|gb|EAW57319.1| splicing factor, arginine/serine-rich 16 (suppressor-of-white-apricot homolog, Drosophila), isoform CRA_c [Homo sapiens]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 69/79 (87%)

Query: 1  MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
          MWHEARK E+K+RG+MVDYK+RAERRR+YYEKI+ DP QF+Q+HGR CK+HLD +VALAA
Sbjct: 1  MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAA 60

Query: 61 DSPSTMMSWQGDRDIMIDR 79
          +SP  MM WQGD + MIDR
Sbjct: 61 ESPVNMMPWQGDTNNMIDR 79

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|440902282|gb|ELR53089.1| Splicing factor, arginine/serine-rich 16 [Bos grunniens mutus]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 69/79 (87%)

Query: 1  MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
          MWHEARK E+K+RG+MVDYK+RAERRR+YYEKI+ DP QF+Q+HGR CK+HLD +VALAA
Sbjct: 1  MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAA 60

Query: 61 DSPSTMMSWQGDRDIMIDR 79
          +SP  MM WQGD + MIDR
Sbjct: 61 ESPVNMMPWQGDTNNMIDR 79

Source: Bos grunniens mutus

Species: Bos grunniens

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410982800|ref|XP_004001601.1| PREDICTED: LOW QUALITY PROTEIN: CLK4-associating serine/arginine rich protein-like [Felis catus]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 69/79 (87%)

Query: 1  MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
          MWHEARK E+K+RG+MVDYK+RAERRR+YYEKI+ DP QF+Q+HGR CK+HLD +VALAA
Sbjct: 1  MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAA 60

Query: 61 DSPSTMMSWQGDRDIMIDR 79
          +SP  MM WQGD + MIDR
Sbjct: 61 ESPVNMMPWQGDTNNMIDR 79

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426389158|ref|XP_004060991.1| PREDICTED: CLK4-associating serine/arginine rich protein isoform 1 [Gorilla gorilla gorilla]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 69/79 (87%)

Query: 1  MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
          MWHEARK E+K+RG+MVDYK+RAERRR+YYEKI+ DP QF+Q+HGR CK+HLD +VALAA
Sbjct: 1  MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAA 60

Query: 61 DSPSTMMSWQGDRDIMIDR 79
          +SP  MM WQGD + MIDR
Sbjct: 61 ESPVNMMPWQGDTNNMIDR 79

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
MGI|MGI:1855695	668	Clasrp "CLK4-associating serin	1.0	0.118	0.721	4.1e-29
RGD|1563538	668	Clasrp "CLK4-associating serin	1.0	0.118	0.721	4.1e-29
UNIPROTKB|A0JNI5	670	CLASRP "CLK4-associating serin	1.0	0.117	0.721	4.1e-29
UNIPROTKB|Q8N2M8	674	CLASRP "CLK4-associating serin	1.0	0.117	0.721	4.2e-29
ZFIN|ZDB-GENE-060503-837	645	clasrp "CLK4-associating serin	1.0	0.122	0.708	4.3e-27
FB|FBgn0039215	961	CG6695 [Drosophila melanogaste	1.0	0.082	0.645	1.4e-24

MGI|MGI:1855695 Clasrp "CLK4-associating serine/arginine rich protein" [Mus musculus (taxid:10090)]

 Score = 331 (121.6 bits), Expect = 4.1e-29, P = 4.1e-29
 Identities = 57/79 (72%), Positives = 69/79 (87%)

Query:     1 MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
             MWHEARK E+K+RG+MVDYK+RAERRR+YYEKI+ DP QF+Q+HGR CK+HLD +VALAA
Sbjct:     1 MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAA 60

Query:    61 DSPSTMMSWQGDRDIMIDR 79
             +SP  MM WQGD + MIDR
Sbjct:    61 ESPVNMMPWQGDTNNMIDR 79

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008380 "RNA splicing" evidence=IEA

RGD|1563538 Clasrp "CLK4-associating serine/arginine rich protein" [Rattus norvegicus (taxid:10116)]

 Score = 331 (121.6 bits), Expect = 4.1e-29, P = 4.1e-29
 Identities = 57/79 (72%), Positives = 69/79 (87%)

Query:     1 MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
             MWHEARK E+K+RG+MVDYK+RAERRR+YYEKI+ DP QF+Q+HGR CK+HLD +VALAA
Sbjct:     1 MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAA 60

Query:    61 DSPSTMMSWQGDRDIMIDR 79
             +SP  MM WQGD + MIDR
Sbjct:    61 ESPVNMMPWQGDTNNMIDR 79

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

UNIPROTKB|A0JNI5 CLASRP "CLK4-associating serine/arginine rich protein" [Bos taurus (taxid:9913)]

 Score = 331 (121.6 bits), Expect = 4.1e-29, P = 4.1e-29
 Identities = 57/79 (72%), Positives = 69/79 (87%)

Query:     1 MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
             MWHEARK E+K+RG+MVDYK+RAERRR+YYEKI+ DP QF+Q+HGR CK+HLD +VALAA
Sbjct:     1 MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAA 60

Query:    61 DSPSTMMSWQGDRDIMIDR 79
             +SP  MM WQGD + MIDR
Sbjct:    61 ESPVNMMPWQGDTNNMIDR 79

GO:0005634 "nucleus" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|Q8N2M8 CLASRP "CLK4-associating serine/arginine rich protein" [Homo sapiens (taxid:9606)]

 Score = 331 (121.6 bits), Expect = 4.2e-29, P = 4.2e-29
 Identities = 57/79 (72%), Positives = 69/79 (87%)

Query:     1 MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
             MWHEARK E+K+RG+MVDYK+RAERRR+YYEKI+ DP QF+Q+HGR CK+HLD +VALAA
Sbjct:     1 MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAA 60

Query:    61 DSPSTMMSWQGDRDIMIDR 79
             +SP  MM WQGD + MIDR
Sbjct:    61 ESPVNMMPWQGDTNNMIDR 79

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-060503-837 clasrp "CLK4-associating serine/arginine rich protein" [Danio rerio (taxid:7955)]

 Score = 312 (114.9 bits), Expect = 4.3e-27, P = 4.3e-27
 Identities = 56/79 (70%), Positives = 66/79 (83%)

Query:     1 MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
             MW EARK E+K+RG+MVDYKRR ERRR+YYEKI+ DP QF+Q+HGR  KIHLD +VALAA
Sbjct:     1 MWQEARKHERKLRGMMVDYKRRGERRREYYEKIKKDPAQFLQVHGRAYKIHLDSAVALAA 60

Query:    61 DSPSTMMSWQGDRDIMIDR 79
             +SP  MM WQGD + MIDR
Sbjct:    61 ESPINMMPWQGDTNNMIDR 79

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0039215 CG6695 [Drosophila melanogaster (taxid:7227)]

 Score = 292 (107.8 bits), Expect = 1.4e-24, P = 1.4e-24
 Identities = 51/79 (64%), Positives = 68/79 (86%)

Query:     1 MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAA 60
             MWHEARKQE+KIRGL+VDY++RAERR+ +Y+KI+ADPTQF+Q+HGR  KI+LDP+VA A 
Sbjct:     1 MWHEARKQERKIRGLIVDYRKRAERRQYFYDKIQADPTQFLQLHGRRSKIYLDPAVAAAG 60

Query:    61 DSPSTMMSWQGDRDIMIDR 79
             D  + ++ WQG +D +IDR
Sbjct:    61 DGAAIIVPWQGQQDNLIDR 79


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.136   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       79        79   0.00091  102 3  11 22  0.36    29
                                                     29  0.39    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  552 (59 KB)
  Total size of DFA:  113 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  9.60u 0.08s 9.68t   Elapsed:  00:00:12
  Total cpu time:  9.60u 0.08s 9.68t   Elapsed:  00:00:13
  Start:  Thu Aug 15 12:18:11 2013   End:  Thu Aug 15 12:18:24 2013

GO:0003729 "mRNA binding" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8CFC7	CLASR_MOUSE	No assigned EC number	0.7215	1.0	0.1182	yes	N/A
Q5HZB6	CLASR_RAT	No assigned EC number	0.7215	1.0	0.1182	yes	N/A
Q8N2M8	CLASR_HUMAN	No assigned EC number	0.7215	1.0	0.1172	yes	N/A
A0JNI5	CLASR_BOVIN	No assigned EC number	0.7215	1.0	0.1179	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	79
pfam09750	121	pfam09750, DRY_EERY, Alternative splicing regulato	3e-13

>gnl|CDD|220379 pfam09750, DRY_EERY, Alternative splicing regulator

 Score = 59.4 bits (144), Expect = 3e-13
 Identities = 22/41 (53%), Positives = 29/41 (70%)

Query: 39 QFIQIHGRPCKIHLDPSVALAADSPSTMMSWQGDRDIMIDR 79
          QF+Q+ GR CKI  D  VA AA+S   ++ WQGD+D +IDR
Sbjct: 1  QFLQVFGRACKIFRDDGVAAAAESGQILVPWQGDQDNLIDR 41

This entry represents the conserved N-terminal region of SWAP (suppressor-of-white-apricot protein) proteins. This region contains two highly conserved motifs, viz: DRY and EERY, which appear to be the sites for alternative splicing of exons 2 and 3 of the SWAP mRNA. These proteins are thus thought to be involved in auto-regulation of pre-mRNA splicing. Most family members are associated with two Surp domains pfam01805 and an Arginine- serine-rich binding region towards the C-terminus. Length = 121

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	79
KOG2548|consensus	653		100.0
PF09750	122	DRY_EERY: Alternative splicing regulator ; InterPr	99.85
KOG1847|consensus	878		99.04

>KOG2548|consensus

Probab=100.00  E-value=7e-37  Score=251.15  Aligned_cols=76  Identities=66%  Similarity=1.070  Sum_probs=74.9

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhhhheeccceeeeChHHHhhhcCCCceeccCCCCCCcccC
Q psy6754           1 MWHEARKQEKKIRGLMVDYKRRAERRRDYYEKIRADPTQFIQIHGRPCKIHLDPSVALAADSPSTMMSWQGDRDIMIDR   79 (79)
Q Consensus         1 MwhEARkqEk~ir~~m~d~rkRaErr~~~~e~~k~DP~q~Lqv~G~~cki~~D~~~a~a~e~~~~liPWqGd~dilIDR   79 (79)
                      ||||||+|||+||+|||||+||||||+.||||+++||+|||||||++|+||+|++||+|+|+ ++||  |||.+|||||
T Consensus         1 MWHEARrqEkkvr~~mvd~rKRAERRr~yyekirkDP~QflQ~hGrr~kvhlD~gva~AaEd-~~lm--QGd~~n~idr   76 (653)
T KOG2548|consen    1 MWHEARRQEKKVRDMMVDYRKRAERRRIYYEKIRKDPIQFLQAHGRRYKVHLDDGVAQAAED-NILM--QGDSTNQIDR   76 (653)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhchhheeeccHHHHHhccc-hhhh--cccccchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999 8888  9999999997

>PF09750 DRY_EERY: Alternative splicing regulator ; InterPro: IPR019147 This entry represents the conserved N-terminal region of SWAP (suppressor-of-white-apricot protein) splice factor proteins

Probab=99.85  E-value=2.9e-22  Score=136.96  Aligned_cols=41  Identities=46%  Similarity=0.880  Sum_probs=40.5

Q ss_pred             hhhhheeccceeeeChHHHhhhcCCCceeccCCCCCCcccC
Q psy6754          39 QFIQIHGRPCKIHLDPSVALAADSPSTMMSWQGDRDIMIDR   79 (79)
Q Consensus        39 q~Lqv~G~~cki~~D~~~a~a~e~~~~liPWqGd~dilIDR   79 (79)
                      |||+|||++||||+|+++|.|++++++|||||||++|||||
T Consensus         1 q~L~V~G~~cklf~D~~~a~~~~~~~~LiPW~Gd~~~lIDR   41 (122)
T PF09750_consen    1 QFLQVFGYACKLFRDDEVAQAIESGKHLIPWQGDPDLLIDR   41 (122)
T ss_pred             CceEEEeEeeeeecCHHHHHHHhCcCCcccCCCCcccceeH
Confidence            79999999999999999999999999999999999999998

This region contains two highly conserved motifs, viz: DRY and EERY, which appear to be the sites for alternative splicing of exons 2 and 3 of the SWAP mRNA []. These proteins are thus thought to be involved in auto-regulation of pre-mRNA splicing. Most family members are associated with two Surp domains (IPR000061 from INTERPRO) and an arginine/serine-rich binding region towards the C terminus.

>KOG1847|consensus

Probab=99.04  E-value=5.5e-11  Score=101.07  Aligned_cols=43  Identities=30%  Similarity=0.534  Sum_probs=41.2

Q ss_pred             cchhhhheeccceeeeChHHHhhhcCCCceeccCCCCCCcccC
Q psy6754          37 PTQFIQIHGRPCKIHLDPSVALAADSPSTMMSWQGDRDIMIDR   79 (79)
Q Consensus        37 P~q~Lqv~G~~cki~~D~~~a~a~e~~~~liPWqGd~dilIDR   79 (79)
                      .+--|.||||+|+||.|+..|.+.+++.+||||+||++|+|||
T Consensus        30 ~~~dLlVfGya~~~F~dD~~a~~v~~~~hlVpw~GDp~~~IDR   72 (878)
T KOG1847|consen   30 HTMDLLVFGYAALFFDDDSMATFVNSPTHLVPWNGDPSLFIDR   72 (878)
T ss_pred             ceeeEEEeeeehhccCchHHHHhhcCCceecccCCChhhhccc
Confidence            5667999999999999999999999999999999999999998

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00