Psyllid ID: psy6769

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MITCSNPEPSYVFQLGLFILNFTLLIPCSKKNVELLVNFVLRVPPLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPIELATV
Secondary Structure (PSIPRED)
ccccccccccHHHHccHHHccccccccccccccHHHHccccccccccccccccccHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHEEccccccccccccccHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHccc
Coil and Loop (DISEMBL)
mitcsnpepsyvFQLGLFILNFtllipcskkNVELLVNFVlrvpplspspvidisdddlvTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHkihipielatv
Flexible Loop (DISEMBL)
mitcsnpepSYVFQLGLFILNFTLLIPCSKKNVELLVNFVLRVPplspspvidisdddlVTISVRdlnrqlkmrglsrediikmkqrrrtlknrgyaascrikrieqkdeleteksqeyqDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPIELATV
Low Complexity Region (SEG)
MITCSNPEPSYVFQLGLFILNFTLLIPCSKKNVELLVNFvlrvpplspspvidisdddlvTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPIELATV
Disordered region (IsUnstruct)
*********SYVFQLGLFILNFTLLIPCSKKNVELLVNFVLRVPPLSPSPVIDISDDDLVTISVRDLNRQLKMRG*****II*************YAASCR**************************DCNLMREELHAYSLKCEALIKFAAKHKIHIPIEL***
Disordered Region (DISOPRED)
********PSYVFQLGLFILNF************************************LVTISVRDL************************************************************************SLKC*********************
Disordered Region (DISEMBL)
MITCSNPEPSYVFQLGLFILNFTLLIPCSKKNVELLVNFVLRVPPLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPIELATV
Disordered Region (DISPRO)
*ITCSNPEPSYVFQLGLFILNFTLLIPCSKKNVELLVNFVLRVPPLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPIE****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MITCSNPEPSYVFQLGLFILNFTLLIPCSKKNVELLVNFVLRVPPLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQxxxxxxxxxxxxxxxxxxxxxCNLMREELHAYSLKCEALIKFAAKHKIHIPIELATV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q90889	162	Transcription factor MafG	yes	N/A	0.591	0.598	0.545	3e-23
Q76MX4	189	Transcription factor MafG	yes	N/A	0.725	0.629	0.476	4e-23
O54790	162	Transcription factor MafG	yes	N/A	0.591	0.598	0.545	4e-23
A5PJV0	162	Transcription factor MafG	no	N/A	0.591	0.598	0.545	4e-23
Q90596	156	Transcription factor MafK	no	N/A	0.756	0.794	0.476	6e-23
O15525	162	Transcription factor MafG	yes	N/A	0.591	0.598	0.535	6e-23
Q61827	156	Transcription factor MafK	no	N/A	0.597	0.628	0.539	9e-23
O60675	156	Transcription factor MafK	no	N/A	0.597	0.628	0.539	1e-22
Q98UK5	356	Transcription factor MafB	no	N/A	0.560	0.258	0.542	4e-22
Q90370	311	Transcription factor MafB	N/A	N/A	0.609	0.321	0.519	5e-22

>sp|Q90889|MAFG_CHICK Transcription factor MafG OS=Gallus gallus GN=MAFG PE=3 SV=1

 Score =  107 bits (267), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 76/99 (76%), Gaps = 2/99 (2%)

Query: 52  IDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDEL 111
             ++D++LVT+SVR+LN+ L  RGLS+E+II++KQRRRTLKNRGYAASCR+KR+ QK+EL
Sbjct: 22  TSLTDEELVTMSVRELNQHL--RGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEEL 79

Query: 112 ETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFA 150
           E +K++  Q++E +  +   M+ EL A   K EAL  FA
Sbjct: 80  EKQKAELQQEVEKLASENASMKMELDALRSKYEALQNFA 118

Since they lack a putative transactivation domain, the small Mafs behave as transcriptional repressors when they dimerize among themselves. However, they seem to serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF-E2 transcription factor. Transcription factor, component of erythroid-specific transcription factor NF-E2. May be involved in signal transduction of extracellular H(+).
Gallus gallus (taxid: 9031)

>sp|Q76MX4|MAFG_RAT Transcription factor MafG OS=Rattus norvegicus GN=Mafg PE=2 SV=2

 Score =  107 bits (266), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/130 (47%), Positives = 90/130 (69%), Gaps = 11/130 (8%)

Query: 21  NFTLLIPCSKKNVELLVNFVLRVPPLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSRED 80
           +++ L PC+   V L V    R P  + +    ++D++LVT+SVR+LN+ L  RGLS+E+
Sbjct: 27  SYSALTPCA---VPLQVK---REPGENGT---SLTDEELVTMSVRELNQHL--RGLSKEE 75

Query: 81  IIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYS 140
           II++KQRRRTLKNRGYAASCR+KR+ QK+ELE +K++  Q++E +  +   M+ EL A  
Sbjct: 76  IIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALR 135

Query: 141 LKCEALIKFA 150
            K EAL  FA
Sbjct: 136 SKYEALQNFA 145

Since they lack a putative transactivation domain, the small Mafs behave as transcriptional repressors when they dimerize among themselves. However, they seem to serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF-E2 transcription factor. Transcription factor, component of erythroid-specific transcription factor NF-E2. Activates globin gene expression when associated with NF-E2 (By similarity). May be involved in signal transduction of extracellular H(+).

Rattus norvegicus (taxid: 10116)

>sp|O54790|MAFG_MOUSE Transcription factor MafG OS=Mus musculus GN=Mafg PE=1 SV=1

 Score =  107 bits (266), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 76/99 (76%), Gaps = 2/99 (2%)

Query: 52  IDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDEL 111
             ++D++LVT+SVR+LN+ L  RGLS+E+II++KQRRRTLKNRGYAASCR+KR+ QK+EL
Sbjct: 22  TSLTDEELVTMSVRELNQHL--RGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEEL 79

Query: 112 ETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFA 150
           E +K++  Q++E +  +   M+ EL A   K EAL  FA
Sbjct: 80  EKQKAELQQEVEKLASENASMKLELDALRSKYEALQNFA 118

Since they lack a putative transactivation domain, the small Mafs behave as transcriptional repressors when they dimerize among themselves. However, they seem to serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF-E2 transcription factor. Transcription factor, component of erythroid-specific transcription factor NF-E2. Activates globin gene expression when associated with NF-E2. May be involved in signal transduction of extracellular H(+).

Mus musculus (taxid: 10090)

>sp|A5PJV0|MAFG_BOVIN Transcription factor MafG OS=Bos taurus GN=MAFG PE=2 SV=1

 Score =  107 bits (266), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 76/99 (76%), Gaps = 2/99 (2%)

Query: 52  IDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDEL 111
             ++D++LVT+SVR+LN+ L  RGLS+E+II++KQRRRTLKNRGYAASCR+KR+ QK+EL
Sbjct: 22  TSLTDEELVTMSVRELNQHL--RGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEEL 79

Query: 112 ETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFA 150
           E +K++  Q++E +  +   M+ EL A   K EAL  FA
Sbjct: 80  EKQKAELQQEVEKLASENASMKLELDALRSKYEALQNFA 118

Since they lack a putative transactivation domain, the small Mafs behave as transcriptional repressors when they dimerize among themselves. However, they seem to serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF-E2 transcription factor. Transcription factor, component of erythroid-specific transcription factor NF-E2. Activates globin gene expression when associated with NF-E2. May be involved in signal transduction of extracellular H(+).

Bos taurus (taxid: 9913)

>sp|Q90596|MAFK_CHICK Transcription factor MafK OS=Gallus gallus GN=MAFK PE=2 SV=1

 Score =  106 bits (265), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 62/130 (47%), Positives = 90/130 (69%), Gaps = 6/130 (4%)

Query: 38  NFVLRVPPLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYA 97
           N  L+V   S      +SDD+LV++SVR+LN+ L  RGL++E++I++KQRRRTLKNRGYA
Sbjct: 8   NKALKVKEESGENAPVLSDDELVSMSVRELNQHL--RGLTKEEVIRLKQRRRTLKNRGYA 65

Query: 98  ASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFA---AKHK 154
           ASCRIKR+ QK+ELE ++ +  Q++E + ++ + M+ EL A   K EAL  FA   A+  
Sbjct: 66  ASCRIKRVTQKEELERQRVELQQEVEKLARENSSMKLELDALRSKYEALQTFARTVARGP 125

Query: 155 IHIPIELATV 164
           I  P ++AT 
Sbjct: 126 I-TPTKVATT 134

Since they lack a putative transactivation domain, the small Mafs behave as transcriptional repressors when they dimerize among themselves. However, they seem to serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF-E2 transcription factor.

Gallus gallus (taxid: 9031)

>sp|O15525|MAFG_HUMAN Transcription factor MafG OS=Homo sapiens GN=MAFG PE=1 SV=1

 Score =  106 bits (265), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 76/99 (76%), Gaps = 2/99 (2%)

Query: 52  IDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDEL 111
             ++D++LVT+SVR+LN+ L  RGLS+E+I+++KQRRRTLKNRGYAASCR+KR+ QK+EL
Sbjct: 22  TSLTDEELVTMSVRELNQHL--RGLSKEEIVQLKQRRRTLKNRGYAASCRVKRVTQKEEL 79

Query: 112 ETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFA 150
           E +K++  Q++E +  +   M+ EL A   K EAL  FA
Sbjct: 80  EKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFA 118

Since they lack a putative transactivation domain, the small Mafs behave as transcriptional repressors when they dimerize among themselves. However, they seem to serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF-E2 transcription factor. Transcription factor, component of erythroid-specific transcription factor NF-E2. Activates globin gene expression when associated with NF-E2. May be involved in signal transduction of extracellular H(+).

Homo sapiens (taxid: 9606)

>sp|Q61827|MAFK_MOUSE Transcription factor MafK OS=Mus musculus GN=Mafk PE=2 SV=1

 Score =  105 bits (263), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 79/102 (77%), Gaps = 4/102 (3%)

Query: 49  SPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQK 108
           +PV+  SDD+LV++SVR+LN+ L  RGL++E++ ++KQRRRTLKNRGYAASCRIKR+ QK
Sbjct: 21  APVL--SDDELVSMSVRELNQHL--RGLTKEEVTRLKQRRRTLKNRGYAASCRIKRVTQK 76

Query: 109 DELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFA 150
           +ELE ++ +  Q++E + ++ + MR EL A   K EAL  FA
Sbjct: 77  EELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFA 118

Since they lack a putative transactivation domain, the small Mafs behave as transcriptional repressors when they dimerize among themselves. However, they seem to serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF-E2 transcription factor.

Mus musculus (taxid: 10090)

>sp|O60675|MAFK_HUMAN Transcription factor MafK OS=Homo sapiens GN=MAFK PE=1 SV=1

 Score =  105 bits (263), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 79/102 (77%), Gaps = 4/102 (3%)

Query: 49  SPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQK 108
           +PV+  SDD+LV++SVR+LN+ L  RGL++E++ ++KQRRRTLKNRGYAASCRIKR+ QK
Sbjct: 21  APVL--SDDELVSMSVRELNQHL--RGLTKEEVTRLKQRRRTLKNRGYAASCRIKRVTQK 76

Query: 109 DELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFA 150
           +ELE ++ +  Q++E + ++ + MR EL A   K EAL  FA
Sbjct: 77  EELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFA 118

Since they lack a putative transactivation domain, the small Mafs behave as transcriptional repressors when they dimerize among themselves. However, they seem to serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF-E2 transcription factor.

Homo sapiens (taxid: 9606)

>sp|Q98UK5|MAFB_DANRE Transcription factor MafB OS=Danio rerio GN=mafb PE=2 SV=1

 Score =  103 bits (257), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/94 (54%), Positives = 69/94 (73%), Gaps = 2/94 (2%)

Query: 54  ISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELET 113
            SDD LVT+SVR+LNR L  RG +++++I++KQ+RRTLKNRGYA SCR KR++QK  LE 
Sbjct: 243 FSDDQLVTMSVRELNRHL--RGFTKDEVIRLKQKRRTLKNRGYAQSCRFKRVQQKHLLEN 300

Query: 114 EKSQEYQDMELMEQDCNLMREELHAYSLKCEALI 147
           EK+Q    +E ++Q+ N +  E  AY LKCE L 
Sbjct: 301 EKTQLINQVEQLKQEINRLARERDAYKLKCEKLT 334

May act as a transcriptional activator or repressor. Involved in neurogenesis. Involved in the development of rhombomeres (r) 5 and 6 segments from their common precursor 'proto-segment' in the hindbrain.

Danio rerio (taxid: 7955)

>sp|Q90370|MAFB_COTJA Transcription factor MafB OS=Coturnix coturnix japonica GN=MAFB PE=1 SV=1

 Score =  103 bits (257), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/102 (51%), Positives = 72/102 (70%), Gaps = 2/102 (1%)

Query: 45  PLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKR 104
           P S S     SDD LV++SVR+LNR L  RG +++++I++KQ+RRTLKNRGYA SCR KR
Sbjct: 190 PPSSSVEDRFSDDQLVSMSVRELNRHL--RGFTKDEVIRLKQKRRTLKNRGYAQSCRYKR 247

Query: 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146
           ++QK  LE EK+Q  Q +E ++Q+   +  E  AY LKCE L
Sbjct: 248 VQQKHHLENEKTQLIQQVEQLKQEVTRLARERDAYKLKCEKL 289

Acts as a transcriptional activator or repressor. Plays a pivotal role in regulating lineage-specific hematopoiesis by repressing ETS1-mediated transcription of erythroid-specific genes in myeloid cells. Binds DNA via its basic region-leucine zipper domain.

Coturnix coturnix japonica (taxid: 93934)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
383865649	130	PREDICTED: transcription factor MafG-lik	0.756	0.953	0.725	4e-46
156548530	130	PREDICTED: transcription factor MafG-lik	0.756	0.953	0.741	4e-46
110762745	132	PREDICTED: transcription factor MafG-lik	0.756	0.939	0.717	2e-45
340725084	130	PREDICTED: transcription factor MafG-lik	0.756	0.953	0.717	2e-45
242013947	146	transcription factor MafK, putative [Ped	0.817	0.917	0.685	2e-44
332029104	130	Transcription factor MafG [Acromyrmex ec	0.756	0.953	0.693	4e-43
189239759	134	PREDICTED: similar to MAFF protein, puta	0.743	0.910	0.688	5e-43
307210935	136	Transcription factor MafG [Harpegnathos	0.737	0.889	0.685	4e-41
332373122	134	unknown [Dendroctonus ponderosae]	0.713	0.873	0.666	1e-40
157130288	147	MAFF protein, putative [Aedes aegypti] g	0.713	0.795	0.709	1e-39

>gi|383865649|ref|XP_003708285.1| PREDICTED: transcription factor MafG-like [Megachile rotundata]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 90/124 (72%), Positives = 110/124 (88%)

Query: 41  LRVPPLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASC 100
           +++ PLSP P +DISDD+LVTISVRDLNRQLK+RGLSRE+I++MKQRRRTLKNRGYAASC
Sbjct: 7   IKMDPLSPGPCLDISDDELVTISVRDLNRQLKLRGLSREEIVRMKQRRRTLKNRGYAASC 66

Query: 101 RIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPIE 160
           RIKRIEQKDELE+EK+QEY+DME M++D N MREE+ ++  K +AL KFAA+ KIHIP E
Sbjct: 67  RIKRIEQKDELESEKTQEYRDMEAMQEDNNRMREEIESWHSKYQALKKFAAEKKIHIPPE 126

Query: 161 LATV 164
           L T+
Sbjct: 127 LETM 130

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156548530|ref|XP_001599713.1| PREDICTED: transcription factor MafG-like [Nasonia vitripennis]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 92/124 (74%), Positives = 109/124 (87%)

Query: 41  LRVPPLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASC 100
           +++ PLSP P +DISDD+LVTISVRDLNRQLKMRGLSRE+II+MKQRRRTLKNRGYAASC
Sbjct: 7   MKMDPLSPGPCLDISDDELVTISVRDLNRQLKMRGLSREEIIRMKQRRRTLKNRGYAASC 66

Query: 101 RIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPIE 160
           RIKRIEQKDELE+EK+QEY+DME M++D N MR+E+ +Y  K  AL KFAA+ KIHIP E
Sbjct: 67  RIKRIEQKDELESEKTQEYRDMEAMQEDNNRMRDEIESYHSKYMALKKFAAEKKIHIPPE 126

Query: 161 LATV 164
           L T+
Sbjct: 127 LETM 130

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110762745|ref|XP_001122224.1| PREDICTED: transcription factor MafG-like isoform 1 [Apis mellifera] gi|328782911|ref|XP_003250214.1| PREDICTED: transcription factor MafG-like isoform 2 [Apis mellifera] gi|380021062|ref|XP_003694393.1| PREDICTED: transcription factor MafG-like [Apis florea]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/124 (71%), Positives = 109/124 (87%)

Query: 41  LRVPPLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASC 100
           +++ PLSP P +DISDD+LVTISVRDLNRQLK+RGLSRE+I++MKQRRRTLKNRGYAASC
Sbjct: 9   IKMDPLSPGPCLDISDDELVTISVRDLNRQLKLRGLSREEIVRMKQRRRTLKNRGYAASC 68

Query: 101 RIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPIE 160
           RIKRIEQKDELE+EK+QEY+DME M++D N MREE+ ++  K +AL KFA + KIHIP E
Sbjct: 69  RIKRIEQKDELESEKTQEYRDMEAMQEDNNHMREEIESWHSKYQALKKFALEKKIHIPPE 128

Query: 161 LATV 164
           L T+
Sbjct: 129 LETI 132

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725084|ref|XP_003400904.1| PREDICTED: transcription factor MafG-like [Bombus terrestris] gi|350398303|ref|XP_003485153.1| PREDICTED: transcription factor MafG-like [Bombus impatiens]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/124 (71%), Positives = 109/124 (87%)

Query: 41  LRVPPLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASC 100
           +++ PLSP P +DISDD+LVTISVRDLNRQLK+RGLSRE+I++MKQRRRTLKNRGYAASC
Sbjct: 7   IKMDPLSPGPCLDISDDELVTISVRDLNRQLKLRGLSREEIVRMKQRRRTLKNRGYAASC 66

Query: 101 RIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPIE 160
           RIKRIEQKDELE+EK+QEY+DME M++D N MREE+ ++  K +AL KFA + KIHIP E
Sbjct: 67  RIKRIEQKDELESEKTQEYRDMEAMQEDNNHMREEIESWHSKYQALKKFAIEKKIHIPPE 126

Query: 161 LATV 164
           L T+
Sbjct: 127 LETI 130

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013947|ref|XP_002427660.1| transcription factor MafK, putative [Pediculus humanus corporis] gi|212512090|gb|EEB14922.1| transcription factor MafK, putative [Pediculus humanus corporis]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 96/140 (68%), Positives = 115/140 (82%), Gaps = 6/140 (4%)

Query: 30  KKNVELLVNFVLRVP-----PLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKM 84
           +KN+ L V+F L+       PLSPSPVIDISDD+LV+ISVRDLNRQLK+RGL+RE+I++M
Sbjct: 7   RKNMHL-VSFFLKFSLNKQEPLSPSPVIDISDDELVSISVRDLNRQLKLRGLTREEIVRM 65

Query: 85  KQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCE 144
           KQRRRTLKNRGYAASCRIKRIEQKDELE+EK QEY+DME M++    MREE+ +  +K E
Sbjct: 66  KQRRRTLKNRGYAASCRIKRIEQKDELESEKCQEYRDMEAMQEANQRMREEVDSLLVKYE 125

Query: 145 ALIKFAAKHKIHIPIELATV 164
           AL KFA  +KIHIP EL TV
Sbjct: 126 ALKKFAVANKIHIPPELETV 145

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029104|gb|EGI69117.1| Transcription factor MafG [Acromyrmex echinatior]

 Score =  179 bits (453), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 86/124 (69%), Positives = 107/124 (86%)

Query: 41  LRVPPLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASC 100
           +++ PLSP P +DISDD+LVTISVRDLNRQLK+RGLSRE+I++MKQRRRTLKNRGYAASC
Sbjct: 7   IKMDPLSPGPCLDISDDELVTISVRDLNRQLKLRGLSREEIVRMKQRRRTLKNRGYAASC 66

Query: 101 RIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPIE 160
           RIKRIEQKDELE+EK+QEY+DME M++D N MREE+ ++  K +AL KFA + KI IP +
Sbjct: 67  RIKRIEQKDELESEKTQEYRDMETMQEDNNRMREEIDSWHSKYQALKKFAQEKKIIIPPD 126

Query: 161 LATV 164
           L  +
Sbjct: 127 LENI 130

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239759|ref|XP_001807559.1| PREDICTED: similar to MAFF protein, putative [Tribolium castaneum] gi|270012669|gb|EFA09117.1| hypothetical protein TcasGA2_TC015977 [Tribolium castaneum]

 Score =  179 bits (453), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 84/122 (68%), Positives = 105/122 (86%)

Query: 43  VPPLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRI 102
           +PPLSP P++DISDD+LV+ISVRDLNRQLK+RGLSREDI++MKQRRRTLKNRGYAASCRI
Sbjct: 13  LPPLSPGPILDISDDELVSISVRDLNRQLKLRGLSREDIVRMKQRRRTLKNRGYAASCRI 72

Query: 103 KRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPIELA 162
           KRIEQKDELETEK+QE++DME M+++   M++E+ +   + EAL KFA  +KI IP EL 
Sbjct: 73  KRIEQKDELETEKTQEWRDMETMQEEIKHMKDEMSSIRTRFEALKKFAINNKIPIPTELE 132

Query: 163 TV 164
            +
Sbjct: 133 NL 134

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307210935|gb|EFN87250.1| Transcription factor MafG [Harpegnathos saltator]

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 83/121 (68%), Positives = 105/121 (86%)

Query: 41  LRVPPLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASC 100
           +++ PLSP+P + I+DD+LVTISVRDLNRQLKMRG+++E+I++MKQRRRTLKNRGYAASC
Sbjct: 7   IKMDPLSPNPGLAINDDELVTISVRDLNRQLKMRGVTKEEIVRMKQRRRTLKNRGYAASC 66

Query: 101 RIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPIE 160
           RIKRIEQKDELETEKSQEY+DME M ++ N MR+E+ ++  K +AL KFA + KI IP E
Sbjct: 67  RIKRIEQKDELETEKSQEYRDMEEMHENNNRMRDEIESWYAKFQALKKFAMEKKIMIPPE 126

Query: 161 L 161
           L
Sbjct: 127 L 127

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373122|gb|AEE61702.1| unknown [Dendroctonus ponderosae]

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/117 (66%), Positives = 102/117 (87%)

Query: 45  PLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKR 104
           PLSP P++DI+DD+LV+ISVRDLNR LK+RGL+RE+I++MKQRRRTLKNRGYAASCRIKR
Sbjct: 15  PLSPPPILDITDDELVSISVRDLNRTLKLRGLTREEIVRMKQRRRTLKNRGYAASCRIKR 74

Query: 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPIEL 161
           IEQKDELE EK+QE++DME+M+++   M+EE+     + +AL +FA  +KIHIP+EL
Sbjct: 75  IEQKDELEVEKTQEWRDMEVMQEELVTMKEEMSTIRSRYDALKRFAGTNKIHIPVEL 131

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157130288|ref|XP_001661872.1| MAFF protein, putative [Aedes aegypti] gi|108871932|gb|EAT36157.1| AAEL011739-PB [Aedes aegypti]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/117 (70%), Positives = 98/117 (83%)

Query: 45  PLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKR 104
           PLSP P+ DISDD+LV+ISVRDLNR LK+RGL+R++I++MKQRRRTLKNRGYAASCRIKR
Sbjct: 27  PLSPCPIPDISDDELVSISVRDLNRTLKLRGLTRDEIVRMKQRRRTLKNRGYAASCRIKR 86

Query: 105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPIEL 161
           IEQKDELETEKSQE++DME M +  N MR+E+ A   K EAL KFA   KI +P EL
Sbjct: 87  IEQKDELETEKSQEWRDMEKMHEQTNRMRDEVDALRNKYEALRKFATGEKIPLPPEL 143

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
FB|FBgn0034534	132	maf-S "maf-S" [Drosophila mela	0.615	0.765	0.643	2.1e-29
UNIPROTKB|Q90889	162	MAFG "Transcription factor Maf	0.536	0.543	0.566	1.7e-20
UNIPROTKB|A5PJV0	162	MAFG "Transcription factor Maf	0.536	0.543	0.566	2.1e-20
UNIPROTKB|E2QZ90	162	MAFG "Uncharacterized protein"	0.536	0.543	0.566	2.1e-20
MGI|MGI:96911	162	Mafg "v-maf musculoaponeurotic	0.536	0.543	0.566	2.1e-20
RGD|619953	189	Mafg "v-maf musculoaponeurotic	0.536	0.465	0.566	2.1e-20
ZFIN|ZDB-GENE-040426-2403	171	mafg2 "v-maf musculoaponeuroti	0.615	0.590	0.495	2.7e-20
UNIPROTKB|O15525	162	MAFG "Transcription factor Maf	0.536	0.543	0.555	3.5e-20
ZFIN|ZDB-GENE-980526-515	356	mafba "v-maf musculoaponeuroti	0.512	0.235	0.534	4.4e-20
UNIPROTKB|E1BB01	157	MAFK "Uncharacterized protein"	0.536	0.560	0.544	5.7e-20

FB|FBgn0034534 maf-S "maf-S" [Drosophila melanogaster (taxid:7227)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 65/101 (64%), Positives = 84/101 (83%)

Query:    61 TISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQ 120
             +ISVRDLNR LKMRGL+RE+I++MKQRRRTLKNRGYAASCRIKRIEQKDELET+KS E+ 
Sbjct:    29 SISVRDLNRTLKMRGLNREEIVRMKQRRRTLKNRGYAASCRIKRIEQKDELETKKSYEWT 88

Query:   121 DMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIHIPIEL 161
             ++E M +D   +R E+  +  K +AL++FA +++I IP EL
Sbjct:    89 ELEQMHEDNEQVRREVSNWKNKYKALLQFAIQNEIPIPSEL 129

GO:0005634 "nucleus" evidence=ISS;NAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0006351 "transcription, DNA-dependent" evidence=ISS

GO:0060322 "head development" evidence=IMP

GO:0046982 "protein heterodimerization activity" evidence=ISS;IPI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0048102 "autophagic cell death" evidence=IEP

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|Q90889 MAFG "Transcription factor MafG" [Gallus gallus (taxid:9031)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 51/90 (56%), Positives = 69/90 (76%)

Query:    61 TISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQ 120
             T+SVR+LN+ L  RGLS+E+II++KQRRRTLKNRGYAASCR+KR+ QK+ELE +K++  Q
Sbjct:    31 TMSVRELNQHL--RGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQ 88

Query:   121 DMELMEQDCNLMREELHAYSLKCEALIKFA 150
             ++E +  +   M+ EL A   K EAL  FA
Sbjct:    89 EVEKLASENASMKMELDALRSKYEALQNFA 118

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0030534 "adult behavior" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0045604 "regulation of epidermal cell differentiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|A5PJV0 MAFG "Transcription factor MafG" [Bos taurus (taxid:9913)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 51/90 (56%), Positives = 69/90 (76%)

Query:    61 TISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQ 120
             T+SVR+LN+ L  RGLS+E+II++KQRRRTLKNRGYAASCR+KR+ QK+ELE +K++  Q
Sbjct:    31 TMSVRELNQHL--RGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQ 88

Query:   121 DMELMEQDCNLMREELHAYSLKCEALIKFA 150
             ++E +  +   M+ EL A   K EAL  FA
Sbjct:    89 EVEKLASENASMKLELDALRSKYEALQNFA 118

GO:0005634 "nucleus" evidence=IEA

GO:0045604 "regulation of epidermal cell differentiation" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0030534 "adult behavior" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|E2QZ90 MAFG "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 51/90 (56%), Positives = 69/90 (76%)

Query:    61 TISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQ 120
             T+SVR+LN+ L  RGLS+E+II++KQRRRTLKNRGYAASCR+KR+ QK+ELE +K++  Q
Sbjct:    31 TMSVRELNQHL--RGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQ 88

Query:   121 DMELMEQDCNLMREELHAYSLKCEALIKFA 150
             ++E +  +   M+ EL A   K EAL  FA
Sbjct:    89 EVEKLASENASMKLELDALRSKYEALQNFA 118

GO:0045604 "regulation of epidermal cell differentiation" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0030534 "adult behavior" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

MGI|MGI:96911 Mafg "v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)" [Mus musculus (taxid:10090)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 51/90 (56%), Positives = 69/90 (76%)

Query:    61 TISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQ 120
             T+SVR+LN+ L  RGLS+E+II++KQRRRTLKNRGYAASCR+KR+ QK+ELE +K++  Q
Sbjct:    31 TMSVRELNQHL--RGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQ 88

Query:   121 DMELMEQDCNLMREELHAYSLKCEALIKFA 150
             ++E +  +   M+ EL A   K EAL  FA
Sbjct:    89 EVEKLASENASMKLELDALRSKYEALQNFA 118

GO:0001701 "in utero embryonic development" evidence=IGI

GO:0003677 "DNA binding" evidence=IDA;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0030534 "adult behavior" evidence=IMP

GO:0030641 "regulation of cellular pH" evidence=ISO

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045604 "regulation of epidermal cell differentiation" evidence=IGI

RGD|619953 Mafg "v-maf musculoaponeurotic fibrosarcoma oncogene homolog G (avian)" [Rattus norvegicus (taxid:10116)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 51/90 (56%), Positives = 69/90 (76%)

Query:    61 TISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQ 120
             T+SVR+LN+ L  RGLS+E+II++KQRRRTLKNRGYAASCR+KR+ QK+ELE +K++  Q
Sbjct:    58 TMSVRELNQHL--RGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQ 115

Query:   121 DMELMEQDCNLMREELHAYSLKCEALIKFA 150
             ++E +  +   M+ EL A   K EAL  FA
Sbjct:   116 EVEKLASENASMKLELDALRSKYEALQNFA 145

GO:0001701 "in utero embryonic development" evidence=IEA;ISO

GO:0003677 "DNA binding" evidence=ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0030534 "adult behavior" evidence=IEA;ISO

GO:0030641 "regulation of cellular pH" evidence=IDA

GO:0042127 "regulation of cell proliferation" evidence=IEA;ISO

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045604 "regulation of epidermal cell differentiation" evidence=IEA;ISO

ZFIN|ZDB-GENE-040426-2403 mafg2 "v-maf musculoaponeurotic fibrosarcoma oncogene homolog g (avian), 2" [Danio rerio (taxid:7955)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 53/107 (49%), Positives = 77/107 (71%)

Query:    61 TISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQ 120
             ++SVR+LN+ L  RGLS+E+I+++KQRRRTLKNRGYAASCR+KR+ QK+ELE +K++  Q
Sbjct:    31 SMSVRELNQHL--RGLSKEEILQLKQRRRTLKNRGYAASCRVKRVTQKEELERQKAELQQ 88

Query:   121 DMELMEQDCNLMREELHAYSLKCEALIKFA---AKHKIHIPIELATV 164
             ++E +  +   M+ EL A   K EAL  FA   A+  + +P+  A V
Sbjct:    89 EVEKLASENASMKVELDALRSKYEALQSFARTVARGPV-VPVSTAAV 134

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;IPI

GO:0005634 "nucleus" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IGI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0005667 "transcription factor complex" evidence=IDA

UNIPROTKB|O15525 MAFG "Transcription factor MafG" [Homo sapiens (taxid:9606)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 50/90 (55%), Positives = 69/90 (76%)

Query:    61 TISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQ 120
             T+SVR+LN+ L  RGLS+E+I+++KQRRRTLKNRGYAASCR+KR+ QK+ELE +K++  Q
Sbjct:    31 TMSVRELNQHL--RGLSKEEIVQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQ 88

Query:   121 DMELMEQDCNLMREELHAYSLKCEALIKFA 150
             ++E +  +   M+ EL A   K EAL  FA
Sbjct:    89 EVEKLASENASMKLELDALRSKYEALQTFA 118

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0030534 "adult behavior" evidence=IEA

GO:0030641 "regulation of cellular pH" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0045604 "regulation of epidermal cell differentiation" evidence=IEA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

ZFIN|ZDB-GENE-980526-515 mafba "v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)" [Danio rerio (taxid:7955)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 46/86 (53%), Positives = 64/86 (74%)

Query:    61 TISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQ 120
             T+SVR+LNR L  RG +++++I++KQ+RRTLKNRGYA SCR KR++QK  LE EK+Q   
Sbjct:   250 TMSVRELNRHL--RGFTKDEVIRLKQKRRTLKNRGYAQSCRFKRVQQKHLLENEKTQLIN 307

Query:   121 DMELMEQDCNLMREELHAYSLKCEAL 146
              +E ++Q+ N +  E  AY LKCE L
Sbjct:   308 QVEQLKQEINRLARERDAYKLKCEKL 333

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IMP

GO:0009880 "embryonic pattern specification" evidence=IMP

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E1BB01 MAFK "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 49/90 (54%), Positives = 70/90 (77%)

Query:    61 TISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQ 120
             ++SVR+LN+ L  RGL+RE+++++KQRRRTLKNRGYAASCRIKR+ QK+ELE ++ +  Q
Sbjct:    31 SMSVRELNQHL--RGLTREEVVRLKQRRRTLKNRGYAASCRIKRVTQKEELERQRVELQQ 88

Query:   121 DMELMEQDCNLMREELHAYSLKCEALIKFA 150
             ++E + ++ + MR EL A   K EAL  FA
Sbjct:    89 EVEKLARENSSMRLELDALRSKYEALQTFA 118

GO:0005634 "nucleus" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O15525	MAFG_HUMAN	No assigned EC number	0.5353	0.5914	0.5987	yes	N/A
O54790	MAFG_MOUSE	No assigned EC number	0.5454	0.5914	0.5987	yes	N/A
Q90889	MAFG_CHICK	No assigned EC number	0.5454	0.5914	0.5987	yes	N/A
Q76MX4	MAFG_RAT	No assigned EC number	0.4769	0.7256	0.6296	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	164
pfam03131	93	pfam03131, bZIP_Maf, bZIP Maf transcription factor	2e-41
smart00338	65	smart00338, BRLZ, basic region leucin zipper	5e-05

>gnl|CDD|190534 pfam03131, bZIP_Maf, bZIP Maf transcription factor

 Score =  133 bits (337), Expect = 2e-41
 Identities = 53/93 (56%), Positives = 70/93 (75%), Gaps = 2/93 (2%)

Query: 54  ISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELET 113
            SDD LV++SVR+LNR L  RGLS+E++I++KQRRRTLKNRGYA SCR KR++Q+ ELE 
Sbjct: 1   FSDDQLVSMSVRELNRHL--RGLSKEEVIRLKQRRRTLKNRGYAQSCRSKRVQQRHELEK 58

Query: 114 EKSQEYQDMELMEQDCNLMREELHAYSLKCEAL 146
           EKSQ  Q +E ++Q+ + +  E  A   K EAL
Sbjct: 59  EKSQLQQQVEQLKQEVSRLARERDALKAKYEAL 91

Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerisation and DNA binding property. Thus, this family is probably related to pfam00170. Length = 93

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 39.1 bits (92), Expect = 5e-05
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 85  KQRRRTLKNRGYAASCRIKRIEQKDELETEKSQ---EYQDM----ELMEQDCNLMREELH 137
           K+RRR  +NR  A   R ++  + +ELE +  Q   E + +    E + ++   ++ EL 
Sbjct: 5   KRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64

Query: 138 A 138
            
Sbjct: 65  E 65

Length = 65

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
KOG4196|consensus	135		100.0
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	99.96
KOG3863|consensus	604		99.87
smart00338	65	BRLZ basic region leucin zipper.	99.18
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	98.83
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	98.44
KOG4005|consensus	292		98.12
KOG0837|consensus	279		97.99
KOG0709|consensus	472		97.74
KOG4343|consensus	655		97.62
KOG3584|consensus	348		96.9
KOG4571|consensus	294		96.71
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	95.9
TIGR02209	85	ftsL_broad cell division protein FtsL. This model	95.08
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	95.03
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	93.67
PRK00888	105	ftsB cell division protein FtsB; Reviewed	93.56
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	93.55
KOG3119|consensus	269		93.44
PF14662	193	CCDC155: Coiled-coil region of CCDC155	93.09
PRK15422	79	septal ring assembly protein ZapB; Provisional	92.61
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	90.87
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	90.44
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	90.38
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	89.25
COG5509	65	Uncharacterized small protein containing a coiled-	87.72
PF04999	97	FtsL: Cell division protein FtsL; InterPro: IPR007	87.56
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	87.38
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	87.35
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	87.2
PRK10884	206	SH3 domain-containing protein; Provisional	87.14
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	86.43
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	86.1
PF08537	323	NBP1: Fungal Nap binding protein NBP1; InterPro: I	85.55
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	85.38
PRK13169	110	DNA replication intiation control protein YabA; Re	84.39
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	84.1
PF02344	32	Myc-LZ: Myc leucine zipper domain; InterPro: IPR00	84.09
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	83.95
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	83.78
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	82.78
PRK10884	206	SH3 domain-containing protein; Provisional	82.5
cd04776	118	HTH_GnyR Helix-Turn-Helix DNA binding domain of th	82.04
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	82.0
PRK00295	68	hypothetical protein; Provisional	81.82
PRK02119	73	hypothetical protein; Provisional	81.41
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	81.28
PRK04406	75	hypothetical protein; Provisional	81.23
PRK11637	428	AmiB activator; Provisional	81.22
smart00806	426	AIP3 Actin interacting protein 3. Aip3p/Bud6p is a	80.84
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	80.84
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	80.74
PF07200	150	Mod_r: Modifier of rudimentary (Mod(r)) protein; I	80.25

>KOG4196|consensus

Probab=100.00  E-value=1.9e-43  Score=276.89  Aligned_cols=117  Identities=49%  Similarity=0.692  Sum_probs=107.5

Q ss_pred             CCCCCCCCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHH
Q psy6769          44 PPLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDME  123 (164)
Q Consensus        44 ~pl~p~~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie  123 (164)
                      ++.++.+...||||+||+|||||||++|  +|+++|||++|||+||||||||||||||.||++|+++||+++.+|++|++
T Consensus        14 ~~~~~~~~d~lsDd~LvsmSVReLNr~L--rG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~   91 (135)
T KOG4196|consen   14 AGESGEGGDRLSDDELVSMSVRELNRHL--RGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVE   91 (135)
T ss_pred             ccCCCCCCCCcCHHHHHHhhHHHHHHHh--cCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666777789999999999999999988  99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCCccc
Q psy6769         124 LMEQDCNLMREELHAYSLKCEALIKFAAK--HKIHIPIELA  162 (164)
Q Consensus       124 ~L~~E~~~l~~E~d~~K~k~e~L~~~~~~--~~i~ip~~l~  162 (164)
                      +|+.|++++.+|+|+||.||++|+.|+.+  .+...|...+
T Consensus        92 ~L~~e~s~~~~E~da~k~k~e~l~~~~~~~~~~~~~pS~p~  132 (135)
T KOG4196|consen   92 KLKEENSRLRRELDAYKSKYEALQNSAVSVGASPVSPSSPE  132 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcccc
Confidence            99999999999999999999999999965  4455555443

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=99.96  E-value=8.7e-33  Score=201.85  Aligned_cols=92  Identities=47%  Similarity=0.740  Sum_probs=86.1

Q ss_pred             CChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q psy6769          54 ISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMR  133 (164)
Q Consensus        54 fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~  133 (164)
                      ||||+|++|||+|||++|  +|||++|+..|||+|||+||||||++||+||++++++||.++..|..+++.|..|++.+.
T Consensus         1 ~s~eeL~~m~v~efn~~L--~~lt~~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~   78 (92)
T PF03131_consen    1 FSDEELVSMSVREFNRLL--RGLTEEQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELR   78 (92)
T ss_dssp             --HHHHHHS-HHHHHHHC--TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_pred             CCHHHHhhCCHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy6769         134 EELHAYSLKCEALI  147 (164)
Q Consensus       134 ~E~d~~K~k~e~L~  147 (164)
                      .|++.|+++|+.|.
T Consensus        79 ~e~~~lk~~~~~L~   92 (92)
T PF03131_consen   79 QERDELKRKLEQLQ   92 (92)
T ss_dssp             HCCCCCCCCHHHH-
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999884

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG3863|consensus

Probab=99.87  E-value=4.9e-22  Score=185.44  Aligned_cols=97  Identities=23%  Similarity=0.324  Sum_probs=95.3

Q ss_pred             CCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q psy6769          51 VIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCN  130 (164)
Q Consensus        51 ~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~  130 (164)
                      .+||+.++|++|||.|||.+|++|-||++|+..||++|||+|||.+|||||+||++.|.+||.++..|+.+.++|.+|..
T Consensus       456 ~iPF~vd~IinLp~~dFne~ls~~~lte~QLslIrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~  535 (604)
T KOG3863|consen  456 HIPFSVDEIINLPVDDFNEMLSKYKLTEEQLSLIRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERD  535 (604)
T ss_pred             cCCCchHHhcCCcHHHHHHHHHhcccCHHHHHHhhccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy6769         131 LMREELHAYSLKCEALI  147 (164)
Q Consensus       131 ~l~~E~d~~K~k~e~L~  147 (164)
                      ++.+++..+|+++..|+
T Consensus       536 ~~d~~L~~~kqqls~L~  552 (604)
T KOG3863|consen  536 ELDSTLGVMKQQLSELY  552 (604)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999987

>smart00338 BRLZ basic region leucin zipper

Probab=99.18  E-value=2.1e-10  Score=78.47  Aligned_cols=61  Identities=28%  Similarity=0.348  Sum_probs=56.5

Q ss_pred             HHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          84 MKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCE  144 (164)
Q Consensus        84 LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e  144 (164)
                      .|..||+++||.+|+.||.||.+.+.+||.++..|..+.+.|..+++.+..|+..++..+.
T Consensus         4 ~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~   64 (65)
T smart00338        4 EKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE   64 (65)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5889999999999999999999999999999999999999999999999999988887653

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=98.83  E-value=2.9e-08  Score=67.79  Aligned_cols=61  Identities=20%  Similarity=0.294  Sum_probs=50.9

Q ss_pred             HHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          83 KMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKC  143 (164)
Q Consensus        83 ~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~  143 (164)
                      ..|..+|+.+||.+|+.||.||...+..||..+..|..+.+.|..++..+..+.+.++...
T Consensus         3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~   63 (64)
T PF00170_consen    3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN   63 (64)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3567899999999999999999999999999988888888888888887777777766543

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=98.44  E-value=1.4e-06  Score=58.09  Aligned_cols=49  Identities=27%  Similarity=0.415  Sum_probs=41.7

Q ss_pred             HHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q psy6769          86 QRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREE  135 (164)
Q Consensus        86 qrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E  135 (164)
                      ..||. +||.+|+.||.|+-+...+||.++..|..+...|..+++.+.+|
T Consensus         6 ~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E   54 (54)
T PF07716_consen    6 RERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE   54 (54)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34455 99999999999999999999999888888888888887777665

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG4005|consensus

Probab=98.12  E-value=2.3e-05  Score=68.27  Aligned_cols=54  Identities=30%  Similarity=0.396  Sum_probs=36.9

Q ss_pred             CCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q psy6769          74 RGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNL  131 (164)
Q Consensus        74 ~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~  131 (164)
                      .|||.||    |--||.||||++||+.|-||-.--.++|.++.+|..+-+.|+.|+.+
T Consensus        62 ~HLS~EE----K~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~  115 (292)
T KOG4005|consen   62 DHLSWEE----KVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDS  115 (292)
T ss_pred             cccCHHH----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6999998    45699999999999999998765555554444444433333333333

>KOG0837|consensus

Probab=97.99  E-value=3.4e-05  Score=67.43  Aligned_cols=70  Identities=21%  Similarity=0.323  Sum_probs=62.5

Q ss_pred             CCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          76 LSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA  145 (164)
Q Consensus        76 Ls~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~  145 (164)
                      ..-+.-.++|-.|.++.||.+|..||+||++.+..||+.+..+..+...|..++..+++-....|++...
T Consensus       197 id~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~  266 (279)
T KOG0837|consen  197 IDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVME  266 (279)
T ss_pred             ccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667889999999999999999999999999999999999999999999999999988888888764

>KOG0709|consensus

Probab=97.74  E-value=6.2e-05  Score=69.88  Aligned_cols=90  Identities=18%  Similarity=0.226  Sum_probs=71.1

Q ss_pred             CCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhH-------HhHHHHHHHHH
Q psy6769          52 IDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELET-------EKSQEYQDMEL  124 (164)
Q Consensus        52 i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~-------e~~~L~~qie~  124 (164)
                      +.+|+||.-.+ +.|=+.+-...-||+.|-.-||++||..||+--||-.|+||-+.++.||+       ++.+|+.+++.
T Consensus       219 L~LteeEkrLL-~kEG~slPs~lPLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~  297 (472)
T KOG0709|consen  219 LVLTEEEKRLL-TKEGYSLPSKLPLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEE  297 (472)
T ss_pred             eeccHHHHHHH-HhccCcCcccCCchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHH
Confidence            45677776555 45544444445789999999999999999999999999999999999997       56778888888


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy6769         125 MEQDCNLMREELHAYSLK  142 (164)
Q Consensus       125 L~~E~~~l~~E~d~~K~k  142 (164)
                      |..++..+...+..+...
T Consensus       298 Le~~N~sLl~qL~klQt~  315 (472)
T KOG0709|consen  298 LELSNRSLLAQLKKLQTL  315 (472)
T ss_pred             HhhccHHHHHHHHHHHHH
Confidence            888888877776555543

>KOG4343|consensus

Probab=97.62  E-value=0.00019  Score=68.25  Aligned_cols=63  Identities=24%  Similarity=0.303  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          79 EDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSL  141 (164)
Q Consensus        79 eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~  141 (164)
                      .+..-+|..-|-.|||.||+-.|+||-+...+||.....|-+|-+.|+.|++.+++.++.+-.
T Consensus       275 ~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~  337 (655)
T KOG4343|consen  275 SDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVS  337 (655)
T ss_pred             cCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence            355556666699999999999999999999999999766666666666666666666655543

>KOG3584|consensus

Probab=96.90  E-value=0.0021  Score=57.51  Aligned_cols=52  Identities=23%  Similarity=0.266  Sum_probs=41.0

Q ss_pred             HHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q psy6769          82 IKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMR  133 (164)
Q Consensus        82 ~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~  133 (164)
                      .-.|..=|-+|||.+|.-||.||-+.+.=||..+..|..|-..|-+|+..|+
T Consensus       288 ~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLK  339 (348)
T KOG3584|consen  288 ATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLK  339 (348)
T ss_pred             hhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHH
Confidence            3344455679999999999999999999999998877777666666665543

>KOG4571|consensus

Probab=96.71  E-value=0.012  Score=52.33  Aligned_cols=61  Identities=18%  Similarity=0.189  Sum_probs=54.8

Q ss_pred             HHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          87 RRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI  147 (164)
Q Consensus        87 rRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~  147 (164)
                      +|.+-+|+++|..=|.||..+.++|+.|...|...=++|+.+..++.+|++-+|+-+...+
T Consensus       229 ~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~  289 (294)
T KOG4571|consen  229 RRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY  289 (294)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667899999999999999999999999999999999999999999999999988665443

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=95.90  E-value=0.054  Score=36.93  Aligned_cols=56  Identities=18%  Similarity=0.233  Sum_probs=46.3

Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCCCcc
Q psy6769         106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAA-KHKIHIPIEL  161 (164)
Q Consensus       106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~-~~~i~ip~~l  161 (164)
                      .....+..+...++.+++.++.++..+..+++.++.--+.+.++|+ ..|..-|.|.
T Consensus        17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~~~~E~   73 (80)
T PF04977_consen   17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMVKPGEI   73 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCcCCCCE
Confidence            3445666778888888999999999999999998777888899999 8999888874

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>TIGR02209 ftsL_broad cell division protein FtsL

Probab=95.08  E-value=0.15  Score=35.65  Aligned_cols=52  Identities=17%  Similarity=0.264  Sum_probs=44.0

Q ss_pred             HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCc
Q psy6769         108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKH-KIHIPIE  160 (164)
Q Consensus       108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~-~i~ip~~  160 (164)
                      ...+..+...++++++.++.|++++..|++.+.. .+.+.+.|++. |...|++
T Consensus        26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~-~~rIe~~Ar~~lgM~~p~~   78 (85)
T TIGR02209        26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR-HERIEKIAKKQLGMKLPDA   78 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHhcCCCCCCC
Confidence            4467777888888899999999999999988877 77799999988 9998875

This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=95.03  E-value=0.17  Score=36.26  Aligned_cols=42  Identities=14%  Similarity=0.316  Sum_probs=32.8

Q ss_pred             HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF  149 (164)
Q Consensus       108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~  149 (164)
                      +..|..++..|..+.+.|+.|+.+++.|+.+|+.++.+|.+=
T Consensus        27 ~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k   68 (72)
T PF06005_consen   27 NEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK   68 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445555556666668899999999999999999999988754

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=93.67  E-value=0.57  Score=32.42  Aligned_cols=43  Identities=16%  Similarity=0.245  Sum_probs=38.0

Q ss_pred             HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFA  150 (164)
Q Consensus       108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~  150 (164)
                      +.+||.+...+...+..+++|++.++.+++.+++....|..+=
T Consensus         2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lY   44 (55)
T PF05377_consen    2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLY   44 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999888866553

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=93.56  E-value=0.51  Score=35.62  Aligned_cols=55  Identities=13%  Similarity=0.027  Sum_probs=44.2

Q ss_pred             HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCcc
Q psy6769         107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAK-HKIHIPIEL  161 (164)
Q Consensus       107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~-~~i~ip~~l  161 (164)
                      ...+++.+..++++++++++.++..+..|++.++...+.+-..|+. .|..=|.|+
T Consensus        28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~gEi   83 (105)
T PRK00888         28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKPGET   83 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCCCE
Confidence            4556777888888889999999999999999999877888888885 677666654

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=93.55  E-value=0.3  Score=43.86  Aligned_cols=48  Identities=23%  Similarity=0.233  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         100 CRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI  147 (164)
Q Consensus       100 CR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~  147 (164)
                      =|.+-+.|.+.+.....+|+.++..+..|++.+..|||+||.|++.|-
T Consensus       127 ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN  174 (319)
T PF09789_consen  127 EREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLN  174 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888999999999999999999999999999999999999999975

>KOG3119|consensus

Probab=93.44  E-value=0.39  Score=41.44  Aligned_cols=66  Identities=17%  Similarity=0.191  Sum_probs=43.7

Q ss_pred             CCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          75 GLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYS  140 (164)
Q Consensus        75 gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K  140 (164)
                      .-+..+...-+.+-||=||=-+|+-||.++.+..++....+..|..|-+.|+.++.++++|+..++
T Consensus       184 ~~~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~  249 (269)
T KOG3119|consen  184 LSSPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLR  249 (269)
T ss_pred             CCCchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777777888889999999999999887655555554444444444444444444444333

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=93.09  E-value=0.58  Score=39.54  Aligned_cols=77  Identities=18%  Similarity=0.304  Sum_probs=54.5

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHhhh--hchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          65 RDLNRQLKMRGLSREDIIKMKQRRRTL--KNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLK  142 (164)
Q Consensus        65 reLN~lLk~~gLs~eev~~LKqrRRtL--KNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k  142 (164)
                      +.+++.+..+-.=++++..||.-=..+  .||+-        +.|..++|.|...|..+++.|..|+..+..|+|.++.+
T Consensus        53 ~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L--------~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~  124 (193)
T PF14662_consen   53 KSLQQALQKAKALEEELEDLKTLAKSLEEENRSL--------LAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKR  124 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH
Confidence            344454443334456666666554443  22222        23456899999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy6769         143 CEALIKF  149 (164)
Q Consensus       143 ~e~L~~~  149 (164)
                      ++.|+.-
T Consensus       125 ~~eL~~~  131 (193)
T PF14662_consen  125 SKELATE  131 (193)
T ss_pred             HHHHHHh
Confidence            9999643

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=92.61  E-value=0.63  Score=34.40  Aligned_cols=36  Identities=19%  Similarity=0.309  Sum_probs=27.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         114 EKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF  149 (164)
Q Consensus       114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~  149 (164)
                      ++..+....+.|..|+.+++.|.+.|+.++.+|.+-
T Consensus        40 e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk   75 (79)
T PRK15422         40 EVQNAQHQREELERENNHLKEQQNGWQERLQALLGR   75 (79)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333445568889999999999999999988764

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=90.87  E-value=1.2  Score=36.80  Aligned_cols=45  Identities=16%  Similarity=0.290  Sum_probs=38.9

Q ss_pred             HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAA  151 (164)
Q Consensus       107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~  151 (164)
                      +...|+.+...|+.+++.|..|+..+.++...|+..|+.|.+.-.
T Consensus       105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~  149 (161)
T TIGR02894       105 ENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD  149 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556678888899999999999999999999999999999986543

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=90.44  E-value=1.3  Score=29.06  Aligned_cols=41  Identities=10%  Similarity=0.159  Sum_probs=36.5

Q ss_pred             HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         110 ELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFA  150 (164)
Q Consensus       110 ~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~  150 (164)
                      .||.+-..|.+.-+.|+.+...+.+|.+.++.....|..-.
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl   42 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL   42 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            57888899999999999999999999999999999887654

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=90.38  E-value=6.9  Score=30.24  Aligned_cols=91  Identities=16%  Similarity=0.204  Sum_probs=36.3

Q ss_pred             CCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHH-HHHHHHhHHhHHHHHHHHHHHHHHHH
Q psy6769          53 DISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRI-EQKDELETEKSQEYQDMELMEQDCNL  131 (164)
Q Consensus        53 ~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl-~q~~~LE~e~~~L~~qie~L~~E~~~  131 (164)
                      ..++..+++.    ++.+|..+.=..+.-..+-...+++.+=.-...=...|+ ++...+|.+......+...+..++..
T Consensus        30 ~~~~~~vin~----i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~  105 (151)
T PF11559_consen   30 EDNDVRVINC----IYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKS  105 (151)
T ss_pred             cccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666655    444443333333333333333333332222222222222 23444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy6769         132 MREELHAYSLKCEALI  147 (164)
Q Consensus       132 l~~E~d~~K~k~e~L~  147 (164)
                      ...-....|..+..+.
T Consensus       106 ~~~~~k~~kee~~klk  121 (151)
T PF11559_consen  106 LEAKLKQEKEELQKLK  121 (151)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4433333333333333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.25  E-value=1.8  Score=31.80  Aligned_cols=38  Identities=21%  Similarity=0.354  Sum_probs=31.4

Q ss_pred             HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK  148 (164)
Q Consensus       111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~  148 (164)
                      |..|.+.++..++.|.+|+++++.|-..|..++.+|.+
T Consensus        37 l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG   74 (79)
T COG3074          37 LSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG   74 (79)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44566677778889999999999999999999988875

>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]

Probab=87.72  E-value=0.9  Score=32.39  Aligned_cols=58  Identities=22%  Similarity=0.272  Sum_probs=46.7

Q ss_pred             CCCCCCCCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHH
Q psy6769          44 PPLSPSPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKR  104 (164)
Q Consensus        44 ~pl~p~~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KR  104 (164)
                      +|--|...-.++.|.|.-+||.|||...   ++=++||.++|..|-+=||--.|++.=.+|
T Consensus         7 d~~kka~~~~i~~d~LsllsV~El~eRI---alLq~EIeRlkAe~~kK~~srsAAeaLFrr   64 (65)
T COG5509           7 DAEKKAFGHEIGNDALSLLSVAELEERI---ALLQAEIERLKAELAKKKASRSAAEALFRR   64 (65)
T ss_pred             cccccccccccchhHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHhhhccHHHHHHHHhc
Confidence            3444555668888999999999999976   777999999999999988877777765554

>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum

Probab=87.56  E-value=3.8  Score=29.47  Aligned_cols=54  Identities=17%  Similarity=0.148  Sum_probs=40.6

Q ss_pred             HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCCCccc
Q psy6769         108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAA-KHKIHIPIELA  162 (164)
Q Consensus       108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~-~~~i~ip~~l~  162 (164)
                      ...+..+..++..+.++|..|+.++.-|...++. .+...+.|. +.|+.-|+.=+
T Consensus        37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~-~~rIe~iA~~~LgM~~P~~~q   91 (97)
T PF04999_consen   37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLSS-PSRIERIAREKLGMVPPEPDQ   91 (97)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHcCCCCCCCCCc
Confidence            3456666777788888888888888888877765 677778888 55988887543

One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=87.38  E-value=2.4  Score=30.97  Aligned_cols=83  Identities=17%  Similarity=0.328  Sum_probs=52.4

Q ss_pred             HHHHHHHHhCC---CCHHHHHHHHHHHhhhhchHHHHhhHHHHHH-HHHHHhH---HhHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          65 RDLNRQLKMRG---LSREDIIKMKQRRRTLKNRGYAASCRIKRIE-QKDELET---EKSQEYQDMELMEQDCNLMREELH  137 (164)
Q Consensus        65 reLN~lLk~~g---Ls~eev~~LKqrRRtLKNRgYAQnCR~KRl~-q~~~LE~---e~~~L~~qie~L~~E~~~l~~E~d  137 (164)
                      ..+-..++.+|   ..-+++..+-+.||.++...=.-..+.+.+. ++-.+-.   +...|..+...++.++..+..+.+
T Consensus        12 e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~   91 (108)
T PF02403_consen   12 EEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLK   91 (108)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555665   3456777788888888877776666666665 3344433   455666666666666666666666


Q ss_pred             HHHHHHHHHH
Q psy6769         138 AYSLKCEALI  147 (164)
Q Consensus       138 ~~K~k~e~L~  147 (164)
                      .+..+++.+.
T Consensus        92 ~~e~~l~~~l  101 (108)
T PF02403_consen   92 ELEEELNELL  101 (108)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666665543

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=87.35  E-value=9.3  Score=27.82  Aligned_cols=37  Identities=19%  Similarity=0.318  Sum_probs=29.5

Q ss_pred             HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSL  141 (164)
Q Consensus       105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~  141 (164)
                      ++++..|-.+...+..+++.|+.+.+.+.+++...+.
T Consensus        28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~   64 (108)
T PF02403_consen   28 VDEIIELDQERRELQQELEELRAERNELSKEIGKLKK   64 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence            7788888888888888888888888888877766655

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=87.20  E-value=4.6  Score=28.69  Aligned_cols=43  Identities=16%  Similarity=0.109  Sum_probs=34.3

Q ss_pred             HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF  149 (164)
Q Consensus       107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~  149 (164)
                      -...|..|+..|..+...+..|...+..-.+.-.+|++++..=
T Consensus        15 ~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~R   57 (65)
T TIGR02449        15 YLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITR   57 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456788888888888888888888888888888888886543

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=87.14  E-value=17  Score=30.57  Aligned_cols=35  Identities=9%  Similarity=0.114  Sum_probs=20.4

Q ss_pred             HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLK  142 (164)
Q Consensus       108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k  142 (164)
                      +.+|+.++.+|..+++.++.|+..+..+.|..+..
T Consensus       134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~  168 (206)
T PRK10884        134 INGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT  168 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44466666666666666666666655555555543

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=86.43  E-value=11  Score=31.19  Aligned_cols=42  Identities=17%  Similarity=0.165  Sum_probs=24.6

Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI  147 (164)
Q Consensus       106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~  147 (164)
                      +.+.+||....+|+.+...+..++.....|+..+|..++++.
T Consensus       131 ~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~  172 (190)
T PF05266_consen  131 SEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALK  172 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666666666666655555555555556666655555554

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=86.10  E-value=3.6  Score=31.41  Aligned_cols=41  Identities=17%  Similarity=0.118  Sum_probs=21.8

Q ss_pred             HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI  147 (164)
Q Consensus       107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~  147 (164)
                      ++..|-.+...|..++..|-.|++++.-|.+.++.++..+.
T Consensus        16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~   56 (107)
T PF06156_consen   16 QLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE   56 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444445555555555555555555555555555555443

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle

Probab=85.55  E-value=8.2  Score=35.02  Aligned_cols=71  Identities=17%  Similarity=0.229  Sum_probs=48.0

Q ss_pred             HHHHhhhhchHHHHhhHHHHHHHH--------------------------------HHHhHHhHHHHHHHHHHHHHHHHH
Q psy6769          85 KQRRRTLKNRGYAASCRIKRIEQK--------------------------------DELETEKSQEYQDMELMEQDCNLM  132 (164)
Q Consensus        85 KqrRRtLKNRgYAQnCR~KRl~q~--------------------------------~~LE~e~~~L~~qie~L~~E~~~l  132 (164)
                      +..|+++|+|.....--+||+.++                                --|..++.+|..++..+..|+..+
T Consensus       122 ~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~~~  201 (323)
T PF08537_consen  122 REERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELEIT  201 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566677766666666666554                                345555666677777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCC
Q psy6769         133 REELHAYSLKCEALIKFAAKHKI  155 (164)
Q Consensus       133 ~~E~d~~K~k~e~L~~~~~~~~i  155 (164)
                      .+.++--+.|+.=|..+..+.+|
T Consensus       202 ~k~L~faqekn~LlqslLddani  224 (323)
T PF08537_consen  202 KKDLKFAQEKNALLQSLLDDANI  224 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcc
Confidence            77777777777778888877765

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=85.38  E-value=10  Score=28.45  Aligned_cols=63  Identities=24%  Similarity=0.306  Sum_probs=45.4

Q ss_pred             CCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          74 RGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQE--YQDMELMEQDCNLMREELHAYSLKCEALIKF  149 (164)
Q Consensus        74 ~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L--~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~  149 (164)
                      .-.+++++..+.++-....          +|+   ..+|+++..|  ..++++|+-+++++.-+++.+..+++.+.+.
T Consensus        30 ~~a~~~~~~~l~~~~~~~~----------~Rl---~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~   94 (106)
T PF10805_consen   30 TYAKREDIEKLEERLDEHD----------RRL---QALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQ   94 (106)
T ss_pred             hhccHHHHHHHHHHHHHHH----------HHH---HHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3456777777766655433          233   4578888888  8888888888888888888888888776543

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=84.39  E-value=4.7  Score=31.12  Aligned_cols=40  Identities=15%  Similarity=0.088  Sum_probs=23.7

Q ss_pred             HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL  146 (164)
Q Consensus       107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L  146 (164)
                      ++..+-.+...|..++..|-.|+.++.-|-+.++.+++.+
T Consensus        16 ~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169         16 NLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444555555555666666666666666666666666654

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=84.10  E-value=8.3  Score=26.86  Aligned_cols=47  Identities=11%  Similarity=0.090  Sum_probs=35.1

Q ss_pred             HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy6769         107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKH  153 (164)
Q Consensus       107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~  153 (164)
                      .+.+||.....+..-++.|...+.+-.++++.++..+..|..-.++.
T Consensus         5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~   51 (69)
T PF04102_consen    5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL   51 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46778888888888888888888888888888888888877554443

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes

Probab=84.09  E-value=3.6  Score=25.80  Aligned_cols=29  Identities=14%  Similarity=0.080  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         122 MELMEQDCNLMREELHAYSLKCEALIKFA  150 (164)
Q Consensus       122 ie~L~~E~~~l~~E~d~~K~k~e~L~~~~  150 (164)
                      =.+|..|++.+++.+..+|.+++.|.+-|
T Consensus         3 EqkL~sekeqLrrr~eqLK~kLeqlrnS~   31 (32)
T PF02344_consen    3 EQKLISEKEQLRRRREQLKHKLEQLRNSC   31 (32)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            35777888888888888999998887543

Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=83.95  E-value=8.7  Score=27.45  Aligned_cols=36  Identities=11%  Similarity=0.129  Sum_probs=13.8

Q ss_pred             HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLK  142 (164)
Q Consensus       107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k  142 (164)
                      .+..|+.++..|..+-..|..++..+..|...+++.
T Consensus        19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e   54 (72)
T PF06005_consen   19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQE   54 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333344433333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=83.78  E-value=8  Score=29.50  Aligned_cols=48  Identities=19%  Similarity=0.229  Sum_probs=43.7

Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy6769         106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKH  153 (164)
Q Consensus       106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~  153 (164)
                      +++..||.....+..++..|+.++..+..|-..++-..+.|.......
T Consensus         8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~   55 (107)
T PF06156_consen    8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL   55 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578899999999999999999999999999999999999999876653

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=82.78  E-value=11  Score=30.30  Aligned_cols=38  Identities=21%  Similarity=0.341  Sum_probs=32.4

Q ss_pred             HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK  148 (164)
Q Consensus       111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~  148 (164)
                      .+.+...+..++++|+.|++....|.+++|.+.+.|..
T Consensus       152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~  189 (192)
T PF05529_consen  152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK  189 (192)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45566778888999999999999999999999998864

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PRK10884 SH3 domain-containing protein; Provisional

Probab=82.50  E-value=20  Score=30.12  Aligned_cols=76  Identities=11%  Similarity=0.160  Sum_probs=40.6

Q ss_pred             cHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHH-HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          63 SVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQ-KDELETEKSQEYQDMELMEQDCNLMREELHAYSL  141 (164)
Q Consensus        63 sVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q-~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~  141 (164)
                      |+++....|      +.|+..++++-....+.   -+-|...+++ ....++....|..+-++|++|++.++.+++.+++
T Consensus        90 ~~~~rlp~l------e~el~~l~~~l~~~~~~---~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~  160 (206)
T PRK10884         90 SLRTRVPDL------ENQVKTLTDKLNNIDNT---WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANL  160 (206)
T ss_pred             cHHHHHHHH------HHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455554444      34556565554444432   1122222222 3344555555666666667777777777777777


Q ss_pred             HHHHHH
Q psy6769         142 KCEALI  147 (164)
Q Consensus       142 k~e~L~  147 (164)
                      +.+.+.
T Consensus       161 ~~~~~~  166 (206)
T PRK10884        161 QLDDKQ  166 (206)
T ss_pred             HHHHHH
Confidence            776665

>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR

Probab=82.04  E-value=15  Score=27.64  Aligned_cols=78  Identities=13%  Similarity=0.094  Sum_probs=38.9

Q ss_pred             CCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q psy6769          52 IDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNL  131 (164)
Q Consensus        52 i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~  131 (164)
                      -.+|++++..+..  . ..|+..|+|=+++..+=+......  .-.+.|+    +....|+.....|..+++.|..-.+.
T Consensus        35 R~Y~~~~l~~l~~--I-~~lr~~G~~L~~I~~~l~~~~~~~--~~~~~~~----~~~~~l~~~~~~l~~~~~~l~~~~~~  105 (118)
T cd04776          35 RVYSRRDRARLKL--I-LRGKRLGFSLEEIRELLDLYDPPG--GNRKQLE----KMLEKIEKRRAELEQQRRDIDAALAE  105 (118)
T ss_pred             cccCHHHHHHHHH--H-HHHHHCCCCHHHHHHHHHhhccCC--chHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3677877766531  1 235668999888877665543322  1111121    12334444444444444444444444


Q ss_pred             HHHHHHH
Q psy6769         132 MREELHA  138 (164)
Q Consensus       132 l~~E~d~  138 (164)
                      +...++.
T Consensus       106 L~~~~~~  112 (118)
T cd04776         106 LDAAEER  112 (118)
T ss_pred             HHHHHHH
Confidence            4444333

Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=82.00  E-value=19  Score=34.20  Aligned_cols=54  Identities=20%  Similarity=0.187  Sum_probs=42.2

Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy6769         103 KRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHKIH  156 (164)
Q Consensus       103 KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~i~  156 (164)
                      .-..+..+|+.+...+..+.+.+..+...+..+++....+++.|..-..+.|-.
T Consensus       206 ~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~  259 (650)
T TIGR03185       206 SILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGD  259 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            345678888888888888888888888888888888888888877655555543

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PRK00295 hypothetical protein; Provisional

Probab=81.82  E-value=13  Score=26.08  Aligned_cols=46  Identities=17%  Similarity=0.210  Sum_probs=36.4

Q ss_pred             HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAK  152 (164)
Q Consensus       107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~  152 (164)
                      .+.+||........-++.|...+.+-.++++.++.++..|.+=.++
T Consensus         6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~   51 (68)
T PRK00295          6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE   51 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678888888888888888888888888888888888887654443

>PRK02119 hypothetical protein; Provisional

Probab=81.41  E-value=14  Score=26.26  Aligned_cols=47  Identities=11%  Similarity=0.004  Sum_probs=37.6

Q ss_pred             HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy6769         107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKH  153 (164)
Q Consensus       107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~  153 (164)
                      .+.+||..+.....-++.|...+.+-.+++|.+++++..|..=.++.
T Consensus        10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~   56 (73)
T PRK02119         10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM   56 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46778888888888888888888888888888888888887544443

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=81.28  E-value=11  Score=27.80  Aligned_cols=38  Identities=11%  Similarity=0.178  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy6769         116 SQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKH  153 (164)
Q Consensus       116 ~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~  153 (164)
                      ..+..+++.|....+++.+++|....+++.|...+..+
T Consensus        35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Ev   72 (89)
T PF13747_consen   35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREV   72 (89)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            44555577777777788888888888888877766654

>PRK04406 hypothetical protein; Provisional

Probab=81.23  E-value=14  Score=26.46  Aligned_cols=47  Identities=9%  Similarity=0.065  Sum_probs=37.7

Q ss_pred             HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy6769         107 QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKH  153 (164)
Q Consensus       107 q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~  153 (164)
                      .+.+||........-++.|...+.+-.++++.++.++..|..=.++.
T Consensus        12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~   58 (75)
T PRK04406         12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM   58 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            56788888888888888888888888888888888888886544443

>PRK11637 AmiB activator; Provisional

Probab=81.22  E-value=22  Score=31.95  Aligned_cols=45  Identities=11%  Similarity=0.065  Sum_probs=21.4

Q ss_pred             HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAK  152 (164)
Q Consensus       108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~  152 (164)
                      +..++.+...+..+++.+..++..+..+++..+..+..+.+..-.
T Consensus        91 i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~  135 (428)
T PRK11637         91 LRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR  135 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444455555555555555555444445444444333

>smart00806 AIP3 Actin interacting protein 3

Probab=80.84  E-value=13  Score=34.95  Aligned_cols=63  Identities=21%  Similarity=0.267  Sum_probs=54.3

Q ss_pred             hchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy6769          92 KNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQ------------DCNLMREELHAYSLKCEALIKFAAKHK  154 (164)
Q Consensus        92 KNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~------------E~~~l~~E~d~~K~k~e~L~~~~~~~~  154 (164)
                      -||+|-.+|.+|=-++-+.|-+.+..||.-++.|+.            ++..+.++++..+..+..|..|....+
T Consensus       203 s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eK  277 (426)
T smart00806      203 SNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEK  277 (426)
T ss_pred             cchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            589999999998777888999999999999999885            567789999999999999998876543

Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=80.84  E-value=6.2  Score=26.65  Aligned_cols=34  Identities=12%  Similarity=0.218  Sum_probs=22.2

Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         106 EQKDELETEKSQEYQDMELMEQDCNLMREELHAY  139 (164)
Q Consensus       106 ~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~  139 (164)
                      .++..|+.+...+..+.+.|+.++..+...-+.+
T Consensus        24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~i   57 (80)
T PF04977_consen   24 QEIAELQKEIEELKKENEELKEEIERLKNDPDYI   57 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            4566777777777777777777777774444443

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=80.74  E-value=9  Score=25.76  Aligned_cols=34  Identities=15%  Similarity=0.189  Sum_probs=20.9

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         114 EKSQEYQDMELMEQDCNLMREELHAYSLKCEALI  147 (164)
Q Consensus       114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~  147 (164)
                      ....|...++.|..++..+..+++.++..+..|.
T Consensus        27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~   60 (64)
T PF00170_consen   27 YIEELEEKVEELESENEELKKELEQLKKEIQSLK   60 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666666666666666666666666666654

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins

Probab=80.25  E-value=13  Score=28.50  Aligned_cols=16  Identities=25%  Similarity=0.326  Sum_probs=9.6

Q ss_pred             hhcccHHHHHHHHHhC
Q psy6769          59 LVTISVRDLNRQLKMR   74 (164)
Q Consensus        59 LvsmsVreLN~lLk~~   74 (164)
                      |-+||..||+.+|...
T Consensus         1 L~~lS~~eL~~Ll~d~   16 (150)
T PF07200_consen    1 LQDLSTEELQELLSDE   16 (150)
T ss_dssp             GGS-TTHHHHHHHHH-
T ss_pred             CCcCCHHHHHHHHcCH
Confidence            3467788888877533

The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	164
3a5t_A	107	Crystal Structure Of Mafg-Dna Complex Length = 107		2e-19
2wt7_B	90	Crystal Structure Of The Bzip Heterodimeric Complex		5e-18
2wty_A	97	Crystal Structure Of The Homodimeric Mafb In Comple		5e-18
4eot_A	95	Crystal Structure Of The Mafa Homodimer Bound To Th		4e-15
1k1v_A	41	Solution Structure Of The Dna-Binding Domain Of Maf		8e-07

>pdb|3A5T|A Chain A, Crystal Structure Of Mafg-Dna Complex Length = 107

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
Query: 61  TISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQ 120
           T SVR+LN+ L  RGLS+E+II++KQRRRTLKNRGYAASCR+KR+ QK+ELE +K++  Q
Sbjct: 15  TXSVRELNQHL--RGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQ 72
Query: 121 DMELMEQDCNLMREELHAYSLKCEALIKFA 150
           ++E +  +    + EL A   K EAL  FA
Sbjct: 73  EVEKLASENASXKLELDALRSKYEALQNFA 102

>pdb|2WT7|B Chain B, Crystal Structure Of The Bzip Heterodimeric Complex Mafb:cfos Bound To Dna Length = 90

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Query: 61  TISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQ 120
           ++SVR+LNR L  RG +++++I++KQ+RRTLKNRGYA SCR KR++QK  LE EK+Q  Q
Sbjct: 5   SMSVRELNRHL--RGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQ 62
Query: 121 DMELMEQDCNLMREELHAYSLKCEAL 146
            +E ++Q+ + +  E  AY +K E L
Sbjct: 63  QVEQLKQEVSRLARERDAYKVKSEKL 88

>pdb|2WTY|A Chain A, Crystal Structure Of The Homodimeric Mafb In Complex With The T-Mare Binding Site Length = 97

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Query: 61  TISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQ 120
           ++SVR+LNR L  RG +++++I++KQ+RRTLKNRGYA SCR KR++QK  LE EK+Q  Q
Sbjct: 9   SMSVRELNRHL--RGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQ 66
Query: 121 DMELMEQDCNLMREELHAYSLKCEAL 146
            +E ++Q+ + +  E  AY +K E L
Sbjct: 67  QVEQLKQEVSRLARERDAYKVKSEKL 92

>pdb|4EOT|A Chain A, Crystal Structure Of The Mafa Homodimer Bound To The Consensus Mare Length = 95

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 61/86 (70%), Gaps = 2/86 (2%)
Query: 61  TISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQ 120
           ++SVR+LNRQL  RG S+E++I++KQ+RRTLKNRGYA SCR KR++Q+  LE+EK Q   
Sbjct: 11  SMSVRELNRQL--RGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQS 68
Query: 121 DMELMEQDCNLMREELHAYSLKCEAL 146
            +E ++ +   + +E   Y  K E L
Sbjct: 69  QVEQLKLEVGRLAKERDLYKEKYEKL 94

>pdb|1K1V|A Chain A, Solution Structure Of The Dna-Binding Domain Of Mafg Length = 41

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/35 (71%), Positives = 32/35 (91%), Gaps = 2/35 (5%)
Query: 61 TISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRG 95
          T+SVR+LN+ L  RGLS+E+II++KQRRRTLKNRG
Sbjct: 8  TMSVRELNQHL--RGLSKEEIIQLKQRRRTLKNRG 40

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	6e-22
2wt7_B	90	Transcription factor MAFB; transcription, transcri	1e-20
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	1e-10
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	1e-05
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	4e-04

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 83.9 bits (207), Expect = 6e-22
 Identities = 54/101 (53%), Positives = 76/101 (75%), Gaps = 2/101 (1%)

Query: 52  IDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDEL 111
             ++D++LVT+SVR+LN+ L  RGLS+E+II++KQRRRTLKNRGYAASCR+KR+ QK+EL
Sbjct: 6   TSLTDEELVTMSVRELNQHL--RGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEEL 63

Query: 112 ETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAK 152
           E +K++  Q++E +  +   M+ EL A   K EAL  FA  
Sbjct: 64  EKQKAELQQEVEKLASENASMKLELDALRSKYEALQNFART 104

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 80.0 bits (197), Expect = 1e-20
 Identities = 46/90 (51%), Positives = 67/90 (74%), Gaps = 2/90 (2%)

Query: 57  DDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKS 116
           D LV++SVR+LNR L  RG +++++I++KQ+RRTLKNRGYA SCR KR++QK  LE EK+
Sbjct: 1   DQLVSMSVRELNRHL--RGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKT 58

Query: 117 QEYQDMELMEQDCNLMREELHAYSLKCEAL 146
           Q  Q +E ++Q+ + +  E  AY +K E L
Sbjct: 59  QLIQQVEQLKQEVSRLARERDAYKVKSEKL 88

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1 Length = 92

 Score = 54.2 bits (130), Expect = 1e-10
 Identities = 16/63 (25%), Positives = 33/63 (52%)

Query: 52  IDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDEL 111
           + +S   +  +S+ +L + LK   LS      +++ RR  KN+  A +CR +R ++ D++
Sbjct: 29  LPVSAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKM 88

Query: 112 ETE 114
              
Sbjct: 89  SHY 91

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 91

 Score = 40.7 bits (95), Expect = 1e-05
 Identities = 15/56 (26%), Positives = 26/56 (46%)

Query: 52  IDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQ 107
           I    D +V + V D N  L    L+   +  ++  RR  KN+  A + R +++E 
Sbjct: 33  IPFPTDKIVNLPVDDFNELLARYPLTESQLALVRDIRRRGKNKVAAQNYRKRKLET 88

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 36.2 bits (84), Expect = 4e-04
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 85  KQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREEL 136
           K+R+   +NR  A+  R KR      LE +          ++ +  L+R E+
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
2wt7_B	90	Transcription factor MAFB; transcription, transcri	100.0
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	100.0
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	99.87
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	99.86
2lz1_A	90	Nuclear factor erythroid 2-related factor 2; struc	99.84
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.01
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	98.9
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	98.84
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	98.6
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	98.49
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	98.29
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	97.61
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	97.61
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	97.52
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	93.69
3lay_A	175	Zinc resistance-associated protein; salmonella typ	88.39
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	87.41
2c9l_Y	63	EB1, zebra, BZLF1 trans-activator protein; viral p	87.23
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	87.14
3okq_A	141	BUD site selection protein 6; coiled-coil, protein	86.86
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	86.29
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	85.95
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	85.17
4e61_A	106	Protein BIM1; EB1-like motif, coiled-coil, spindle	84.4
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	83.77
1gmj_A	84	ATPase inhibitor; coiled-coil structure, P depende	82.48
1uii_A	83	Geminin; human, DNA replication, cell cycle; 2.00A	82.43
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	82.06
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	81.98
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	81.74
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	80.4
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	80.1
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	80.05

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=100.00  E-value=1.4e-38  Score=234.74  Aligned_cols=89  Identities=52%  Similarity=0.862  Sum_probs=87.3

Q ss_pred             hhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHH
Q psy6769          57 DDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREEL  136 (164)
Q Consensus        57 eeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~  136 (164)
                      |+||+|||+|||++|  +|||++|+.+|||+||||||||||||||+||++++++||.++.+|+++++.|+.|++++.+|+
T Consensus         1 deLv~msVreLN~~L--~gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~   78 (90)
T 2wt7_B            1 DQLVSMSVRELNRHL--RGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARER   78 (90)
T ss_dssp             CHHHHSCHHHHHTTC--TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccCCHHHHHHHH--cCCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999  799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy6769         137 HAYSLKCEALI  147 (164)
Q Consensus       137 d~~K~k~e~L~  147 (164)
                      |+||+||++|+
T Consensus        79 d~~k~k~~~L~   89 (90)
T 2wt7_B           79 DAYKVKSEKLA   89 (90)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHhc
Confidence            99999999985

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=100.00  E-value=4.8e-40  Score=248.80  Aligned_cols=104  Identities=52%  Similarity=0.770  Sum_probs=91.1

Q ss_pred             CCCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q psy6769          49 SPVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQD  128 (164)
Q Consensus        49 ~~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E  128 (164)
                      +.+++||||+||+|||+|||++|  +|||++|+.+|||+|||||||||||+||+||++++++||+++..|+++++.|+.|
T Consensus         3 ~~~~~~sd~~Lv~m~v~elN~~L--~~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~E   80 (107)
T 3a5t_A            3 HMGTSLTDEELVTMSVRELNQHL--RGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASE   80 (107)
T ss_dssp             CCCCCCCHHHHHHSCHHHHHHTT--TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTST
T ss_pred             CCCCCCCHHHHhcCCHHHHHHHH--hCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999998  8999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy6769         129 CNLMREELHAYSLKCEALIKFAAKHK  154 (164)
Q Consensus       129 ~~~l~~E~d~~K~k~e~L~~~~~~~~  154 (164)
                      ++++.+|+|.||+||++|++||+++|
T Consensus        81 n~~l~~E~~~lk~k~e~L~~~a~s~~  106 (107)
T 3a5t_A           81 NASMKLELDALRSKYEALQNFARTVA  106 (107)
T ss_dssp             TSHHHHTTTSSSSCC-----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999876

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=99.87  E-value=6.7e-23  Score=151.42  Aligned_cols=64  Identities=25%  Similarity=0.373  Sum_probs=60.0

Q ss_pred             CCCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhH
Q psy6769          50 PVIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELET  113 (164)
Q Consensus        50 ~~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~  113 (164)
                      -.+|||+++|++|||+|||++|+++|||.+|+..+|++|||+|||+|||+||+||++.++.|+.
T Consensus        27 l~lPfs~~eIv~lpv~efn~lLk~~~Ls~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~   90 (92)
T 1skn_P           27 NELPVSAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH   90 (92)
T ss_dssp             TTCSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred             hCCCCCHHHHHHCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            3589999999999999999999999999999999999999999999999999999999988764

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.86  E-value=3.1e-23  Score=153.00  Aligned_cols=58  Identities=26%  Similarity=0.361  Sum_probs=55.8

Q ss_pred             CCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHH
Q psy6769          51 VIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQK  108 (164)
Q Consensus        51 ~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~  108 (164)
                      .+|||+|+|++|||+|||++|+++|||.+|+..|+++|||+|||+|||+||+||++.+
T Consensus        32 ~lPfs~~~Iv~lpv~efn~ll~~~~Ls~~Ql~lIrdiRRRgKNKvAAqnCRKRKld~I   89 (91)
T 2kz5_A           32 KIPFPTDKIVNLPVDDFNELLARYPLTESQLALVRDIRRRGKNKVAAQNYRKRKLETI   89 (91)
T ss_dssp             TCSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCC
T ss_pred             CCCCCHHHHHHCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            4899999999999999999999999999999999999999999999999999998754

>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.84  E-value=1.3e-22  Score=149.44  Aligned_cols=57  Identities=21%  Similarity=0.418  Sum_probs=55.3

Q ss_pred             CCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHH
Q psy6769          51 VIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQ  107 (164)
Q Consensus        51 ~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q  107 (164)
                      .+|||+|+|++|||.|||++|++++||.+|+..|+++||++|||.|||+||+||++.
T Consensus        32 ~LPFsvdqIvnLpv~eFn~lL~~~~Lt~~Ql~lIrdiRRRgKNkvAAqnCRKRKld~   88 (90)
T 2lz1_A           32 HIPFPVEKIINLPVVDFNEMMSKEQFNEAQLALIRDIRRRGKNKVAAQNCRKRKLEN   88 (90)
T ss_dssp             TCSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHSCSCCCCCCCSCCCCSC
T ss_pred             CCCCCHHHHHHCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhHHHHHHcchhhccc
Confidence            589999999999999999999999999999999999999999999999999999874

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.01  E-value=2.2e-09  Score=73.17  Aligned_cols=58  Identities=26%  Similarity=0.331  Sum_probs=46.4

Q ss_pred             HHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          85 KQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLK  142 (164)
Q Consensus        85 KqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k  142 (164)
                      |.+||+.+||.+|+.||.||.+...+||.++..|..+-+.|+.+++.+..|...++.-
T Consensus         2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~   59 (63)
T 2wt7_A            2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI   59 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678889999999999999999999999997777777777766666666665555543

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=98.90  E-value=2.3e-09  Score=72.64  Aligned_cols=58  Identities=21%  Similarity=0.322  Sum_probs=49.7

Q ss_pred             HHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          86 QRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKC  143 (164)
Q Consensus        86 qrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~  143 (164)
                      -.||+.+||.+|+.||.||.+.+.+||.++..|..+-+.|..+++.+..|...+++.+
T Consensus         2 ~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l   59 (62)
T 1jnm_A            2 AERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV   59 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999998888888888888888888877776654

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=98.84  E-value=1.4e-08  Score=68.46  Aligned_cols=59  Identities=22%  Similarity=0.212  Sum_probs=51.7

Q ss_pred             HHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          85 KQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKC  143 (164)
Q Consensus        85 KqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~  143 (164)
                      |..+|..+||.+|+.||.||.+...+||.++..|..+-..|..+++.+..|...+++.+
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l   59 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL   59 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35688899999999999999999999999998888888888888888888887777653

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=98.60  E-value=1.5e-07  Score=64.26  Aligned_cols=59  Identities=17%  Similarity=0.222  Sum_probs=46.0

Q ss_pred             HHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          84 MKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLK  142 (164)
Q Consensus        84 LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k  142 (164)
                      +|..|++..||.+|+.||.||.+....|+.++..|..+-..|+.+++.+..|+..+|+=
T Consensus         1 ~k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l   59 (63)
T 1ci6_A            1 MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDL   59 (63)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778999999999999999999999999998888888888888888888887776653

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=98.49  E-value=2.2e-07  Score=62.19  Aligned_cols=50  Identities=22%  Similarity=0.256  Sum_probs=38.7

Q ss_pred             HHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q psy6769          85 KQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMRE  134 (164)
Q Consensus        85 KqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~  134 (164)
                      |..||.++||..|+.||.||.....+||.++.+|..+-..|..+++.+..
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~   50 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKD   50 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35788999999999999999999999999966655555555555554443

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=98.29  E-value=1.3e-06  Score=59.78  Aligned_cols=49  Identities=12%  Similarity=0.230  Sum_probs=35.3

Q ss_pred             HHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q psy6769          86 QRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMRE  134 (164)
Q Consensus        86 qrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~  134 (164)
                      ..|++.+||.+|+.||.||.+...+||.++..|..+-+.|..+++.+..
T Consensus        10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~   58 (63)
T 2dgc_A           10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK   58 (63)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667999999999999999999999966655555554444444443

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=97.61  E-value=0.00034  Score=49.86  Aligned_cols=56  Identities=14%  Similarity=0.094  Sum_probs=41.3

Q ss_pred             HHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          85 KQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYS  140 (164)
Q Consensus        85 KqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K  140 (164)
                      +.+.|+-||..+|+-||-||-....+++..+..|..+=..|+.++..+..|++.++
T Consensus        15 ~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr   70 (78)
T 1gu4_A           15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR   70 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567889999999999999998888888866666666666655555555554444

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=97.61  E-value=0.00034  Score=50.82  Aligned_cols=57  Identities=14%  Similarity=0.056  Sum_probs=40.4

Q ss_pred             HHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          86 QRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLK  142 (164)
Q Consensus        86 qrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k  142 (164)
                      .++||-||..+|+-||-||-..-.+++.++..|..+=..|+.++..+..|.+.++.-
T Consensus        16 Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l   72 (87)
T 1hjb_A           16 YKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL   72 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788999999999999999888888875555555555555555555554444433

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=97.52  E-value=0.00033  Score=49.04  Aligned_cols=60  Identities=15%  Similarity=0.184  Sum_probs=52.1

Q ss_pred             HHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          87 RRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEAL  146 (164)
Q Consensus        87 rRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L  146 (164)
                      -||+..||.++..-|.||-..+.+||.++..|....+.|..|+..+...++.+...++.|
T Consensus        10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l   69 (70)
T 1gd2_E           10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL   69 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            578899999999999999999999999999998888888888888888877777766543

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=93.69  E-value=0.25  Score=35.45  Aligned_cols=39  Identities=21%  Similarity=0.321  Sum_probs=30.4

Q ss_pred             HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         111 LETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF  149 (164)
Q Consensus       111 LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~  149 (164)
                      |..++..++...+.|..|+++++.|+..|+.++..|.+-
T Consensus        39 L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk   77 (81)
T 2jee_A           39 LSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR   77 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444555555556668899999999999999999998864

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=88.39  E-value=6.6  Score=31.14  Aligned_cols=74  Identities=12%  Similarity=0.075  Sum_probs=42.6

Q ss_pred             CCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          75 GLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEY-------QDMELMEQDCNLMREELHAYSLKCEALI  147 (164)
Q Consensus        75 gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~-------~qie~L~~E~~~l~~E~d~~K~k~e~L~  147 (164)
                      .||+||...++++|......-.+-  |    +++.....|...|.       ..+++|..|+..+..++....  .+.-.
T Consensus        67 nLT~EQq~ql~~I~~e~r~~~~~L--r----~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R--~k~~~  138 (175)
T 3lay_A           67 PLTTEQQATAQKIYDDYYTQTSAL--R----QQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQR--VKRDV  138 (175)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHH--H----HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHH--H----HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence            699999999999998766554332  2    22333333333332       456666666666666554433  33334


Q ss_pred             HHHHHcCCCC
Q psy6769         148 KFAAKHKIHI  157 (164)
Q Consensus       148 ~~~~~~~i~i  157 (164)
                      ++++. |||.
T Consensus       139 em~Ke-Gip~  147 (175)
T 3lay_A          139 AMAQA-GIPR  147 (175)
T ss_dssp             HHHHT-TCC-
T ss_pred             HHHHh-CCCC
Confidence            56666 8884

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=87.41  E-value=1.5  Score=26.31  Aligned_cols=30  Identities=13%  Similarity=0.183  Sum_probs=21.3

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         114 EKSQEYQDMELMEQDCNLMREELHAYSLKC  143 (164)
Q Consensus       114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~  143 (164)
                      |...|.+++..|++|.+.++-|+.++|+-|
T Consensus         3 eiaalkqeiaalkkeiaalkfeiaalkqgy   32 (33)
T 4dzn_A            3 EIAALKQEIAALKKEIAALKFEIAALKQGY   32 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            445566777777777777777777777654

>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y

Probab=87.23  E-value=2.4  Score=28.85  Aligned_cols=24  Identities=25%  Similarity=0.133  Sum_probs=18.6

Q ss_pred             HhhhhchHHHHhhHHHHHHHHHHH
Q psy6769          88 RRTLKNRGYAASCRIKRIEQKDEL  111 (164)
Q Consensus        88 RRtLKNRgYAQnCR~KRl~q~~~L  111 (164)
                      +.+.|||.++..||.|=-++.++.
T Consensus         4 ~kryknr~asrk~rakfkn~lqh~   27 (63)
T 2c9l_Y            4 IKRYKNRVAARKSRAKFKQLLQHY   27 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568999999999999865544443

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=87.14  E-value=3.7  Score=27.36  Aligned_cols=43  Identities=19%  Similarity=0.163  Sum_probs=28.9

Q ss_pred             HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI  147 (164)
Q Consensus       105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~  147 (164)
                      +.|.+.|..|++.|+++++.=..+++++..|-..+|.-+..|.
T Consensus         9 ~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq   51 (54)
T 1deb_A            9 LKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ   51 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence            4566667777777777777777777777777666666655554

>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A

Probab=86.86  E-value=5.7  Score=31.06  Aligned_cols=61  Identities=18%  Similarity=0.228  Sum_probs=52.0

Q ss_pred             hchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          92 KNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQD------------CNLMREELHAYSLKCEALIKFAAK  152 (164)
Q Consensus        92 KNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E------------~~~l~~E~d~~K~k~e~L~~~~~~  152 (164)
                      -||+|--+|++|=-..-+.|=+.+..|+.-++.|+..            +..+.++++..+..++.|..|..+
T Consensus         7 ~~R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~   79 (141)
T 3okq_A            7 SNRMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDT   79 (141)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999987778888999999999999988864            567889999999999999888654

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=86.29  E-value=3.1  Score=27.53  Aligned_cols=37  Identities=14%  Similarity=0.120  Sum_probs=27.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         115 KSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAA  151 (164)
Q Consensus       115 ~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~  151 (164)
                      ...|..+++.|..++..+..+++.++..+..|..+..
T Consensus        25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~   61 (63)
T 2wt7_A           25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777777777777777777777777777776654

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=85.95  E-value=5  Score=30.73  Aligned_cols=76  Identities=20%  Similarity=0.226  Sum_probs=34.9

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          64 VRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKC  143 (164)
Q Consensus        64 VreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~  143 (164)
                      -+..+++|. +.||..+-.....       -.=|..|-.-=+.=...|+.++.+-+.+++.|+-|+..+.+.+...-.+.
T Consensus        23 CrN~T~lLq-~qLTqAQe~l~~~-------eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~   94 (121)
T 3mq7_A           23 ARNVTHLLQ-QELTEAQKGFQDV-------EAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEV   94 (121)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHH-HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677773 5566655332211       22345554444444444554444444444444444444444444444444


Q ss_pred             HHHH
Q psy6769         144 EALI  147 (164)
Q Consensus       144 e~L~  147 (164)
                      +.|.
T Consensus        95 erlr   98 (121)
T 3mq7_A           95 ERLR   98 (121)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=85.17  E-value=2.3  Score=34.55  Aligned_cols=40  Identities=25%  Similarity=0.189  Sum_probs=32.7

Q ss_pred             HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         109 DELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK  148 (164)
Q Consensus       109 ~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~  148 (164)
                      .+||.++..+..+...|+..+.++..|++.||.||+....
T Consensus        45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~   84 (189)
T 2v71_A           45 AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYA   84 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677888888888888888888888888888888887654

>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}

Probab=84.40  E-value=5.1  Score=29.90  Aligned_cols=45  Identities=9%  Similarity=0.036  Sum_probs=35.1

Q ss_pred             HHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         108 KDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAK  152 (164)
Q Consensus       108 ~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~  152 (164)
                      ......+...|..++..|+.....+.+|||-|=.|+...--+|..
T Consensus        13 L~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe   57 (106)
T 4e61_A           13 LTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHT   57 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445667788888999999999999999999998886666654

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=83.77  E-value=9.5  Score=27.02  Aligned_cols=62  Identities=13%  Similarity=0.188  Sum_probs=50.7

Q ss_pred             HHhhhhchHHHHhhHHHHHH-HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          87 RRRTLKNRGYAASCRIKRIE-QKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK  148 (164)
Q Consensus        87 rRRtLKNRgYAQnCR~KRl~-q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~  148 (164)
                      .||++|-..|-..|=---+. ...+|..-...|..-+.+|.+|.+.+..+++-|+.|-+-|.+
T Consensus        12 LRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~   74 (78)
T 3iv1_A           12 LRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47888888887777655554 346788888889999999999999999999999999888764

>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A

Probab=82.48  E-value=11  Score=27.01  Aligned_cols=55  Identities=16%  Similarity=0.213  Sum_probs=44.6

Q ss_pred             hHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          94 RGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIK  148 (164)
Q Consensus        94 RgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~  148 (164)
                      |..|+-=++=|-.+.+.|..=+..+..+++.-..++.++..+++..|.++..|..
T Consensus        25 rEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~   79 (84)
T 1gmj_A           25 REQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ   79 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            7778777777777788887777777788888888888888888888888887754

>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1

Probab=82.43  E-value=6  Score=28.45  Aligned_cols=59  Identities=15%  Similarity=0.226  Sum_probs=39.2

Q ss_pred             CCCCHHHHHHHHHHHhh-hhchHHHHhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          74 RGLSREDIIKMKQRRRT-LKNRGYAASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKF  149 (164)
Q Consensus        74 ~gLs~eev~~LKqrRRt-LKNRgYAQnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~  149 (164)
                      -|-|..--..|=.+||. |.                ..|+ |+..|..+++.|..|++.++.+.+.++.-.+..+-+
T Consensus        23 e~Pse~YWk~lAE~RR~AL~----------------eaL~-EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q~m   82 (83)
T 1uii_A           23 ENPSSQYWKEVAEKRRKALY----------------EALK-ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYM   82 (83)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH----------------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHH----------------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45566666666666654 22                2333 777888888888888888888877777665555433

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=82.06  E-value=2.7  Score=27.50  Aligned_cols=30  Identities=17%  Similarity=0.102  Sum_probs=14.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         114 EKSQEYQDMELMEQDCNLMREELHAYSLKC  143 (164)
Q Consensus       114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~  143 (164)
                      ++..|+++.+.|+.++..+..+.+.+++++
T Consensus        20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l   49 (53)
T 2yy0_A           20 EIELLRLELAEMKEKYEAIVEENKKLKAKL   49 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444443

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=81.98  E-value=3.4  Score=27.55  Aligned_cols=33  Identities=21%  Similarity=0.237  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         116 SQEYQDMELMEQDCNLMREELHAYSLKCEALIK  148 (164)
Q Consensus       116 ~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~  148 (164)
                      .+|.+|++.|+.|+..+++|+..--+.+.+|-.
T Consensus         6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~   38 (54)
T 1deb_A            6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLET   38 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHh
Confidence            578899999999999999999887777766643

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=81.74  E-value=5.7  Score=30.38  Aligned_cols=41  Identities=17%  Similarity=0.235  Sum_probs=33.3

Q ss_pred             HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         105 IEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEA  145 (164)
Q Consensus       105 l~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~  145 (164)
                      ..++.+|+.|+..|.+++.....|+++++++...++.+...
T Consensus        70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~  110 (121)
T 3mq7_A           70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD  110 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence            44688999999999999999999999999988777766543

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=80.40  E-value=6.3  Score=30.05  Aligned_cols=112  Identities=13%  Similarity=0.044  Sum_probs=50.6

Q ss_pred             hhhhccccCchhhHHHHHhhhccCCCCCCCC--CCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHH
Q psy6769          20 LNFTLLIPCSKKNVELLVNFVLRVPPLSPSP--VIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYA   97 (164)
Q Consensus        20 ~~~~~~~~~~~~~~e~l~~~~~~~~pl~p~~--~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYA   97 (164)
                      -.||+--|+++..+..++.++..----.-..  ...++++.+.-|.  .||-.        ++...+++.-..|....-+
T Consensus        17 k~Y~i~g~e~ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLa--ALNia--------dEl~k~~~~~~~L~~~l~~   86 (138)
T 3hnw_A           17 KVIKLGGYESEEYLQRVASYINNKITEFNKEESYRRMSAELRTDMM--YLNIA--------DDYFKAKKMADSLSLDIEN   86 (138)
T ss_dssp             EEEEECSCSCHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHH--HHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH--HHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence            3567777777777777765443311100111  2345555555442  23331        2344444443333321111


Q ss_pred             HhhHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          98 ASCRIKRIEQKDELETEKSQEYQDMELMEQDCNLMREELHAYSLKCEALI  147 (164)
Q Consensus        98 QnCR~KRl~q~~~LE~e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~  147 (164)
                            ...++..|-.+...++.+++.+.+++..+.++.+.+..+...|.
T Consensus        87 ------~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A           87 ------KDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  13334444444444445555555555555555555554444443

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=80.10  E-value=3.7  Score=26.81  Aligned_cols=29  Identities=21%  Similarity=0.279  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         120 QDMELMEQDCNLMREELHAYSLKCEALIK  148 (164)
Q Consensus       120 ~qie~L~~E~~~l~~E~d~~K~k~e~L~~  148 (164)
                      .+++.|+.|++.++.+.+.++.+.+.|.+
T Consensus        19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~   47 (53)
T 2yy0_A           19 PEIELLRLELAEMKEKYEAIVEENKKLKA   47 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666666666666666666666553

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=80.05  E-value=2.6  Score=28.91  Aligned_cols=60  Identities=12%  Similarity=0.153  Sum_probs=26.9

Q ss_pred             HHHhhhhchHHHH------hhHHHHHHHHHHHhHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769          86 QRRRTLKNRGYAA------SCRIKRIEQKDELETEKS---QEYQDMELMEQDCNLMREELHAYSLKCEA  145 (164)
Q Consensus        86 qrRRtLKNRgYAQ------nCR~KRl~q~~~LE~e~~---~L~~qie~L~~E~~~l~~E~d~~K~k~e~  145 (164)
                      .+||.-=|-+|..      .|...|++...-|...+.   .|+.+.+.|..|++.+.++...+++++.+
T Consensus        11 r~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~   79 (83)
T 1nkp_B           11 RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA   79 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444433455554      454455555555544432   23333444444444444444444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	164
d1k1va_	41	a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 1	9e-17
d1sknp_	74	a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId	9e-07

>d1k1va_ a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 10090]} Length = 41

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Mafg
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.5 bits (165), Expect = 9e-17
 Identities = 29/43 (67%), Positives = 40/43 (93%), Gaps = 2/43 (4%)

Query: 54 ISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGY 96
          ++D++LVT+SVR+LN+ L  RGLS+E+II++KQRRRTLKNRGY
Sbjct: 1  LTDEELVTMSVRELNQHL--RGLSKEEIIQLKQRRRTLKNRGY 41

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]} Length = 74

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.5 bits (100), Expect = 9e-07
 Identities = 16/60 (26%), Positives = 33/60 (55%)

Query: 52  IDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDEL 111
           + +S   +  +S+ +L + LK   LS      +++ RR  KN+  A +CR +R ++ D++
Sbjct: 15  LPVSAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKM 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d1sknp_	74	Skn-1 {Caenorhabditis elegans [TaxId: 6239]}	99.88
d1k1va_	41	Mafg {Mouse (Mus musculus) [TaxId: 10090]}	99.84
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	91.46
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	85.69
d1wu9a1	59	Microtubule-associated protein EB1, C-terminal dim	80.97

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.88  E-value=1.9e-23  Score=147.39  Aligned_cols=61  Identities=26%  Similarity=0.397  Sum_probs=58.6

Q ss_pred             CCCCChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHHHHhhHHHHHHHHHHH
Q psy6769          51 VIDISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGYAASCRIKRIEQKDEL  111 (164)
Q Consensus        51 ~i~fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgYAQnCR~KRl~q~~~L  111 (164)
                      .+|||.++||+|||.|||.+|++++||.+|+..++++||++|||.+|||||++|++++++|
T Consensus        14 ~iPfs~~~Iv~lpv~eFne~l~~~~Lte~Ql~lirDIRRRGKNKvAAqnCRKRKld~~d~l   74 (74)
T d1sknp_          14 ELPVSAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKM   74 (74)
T ss_dssp             TCSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCCccHHHHHHCCHHHHHHHHHhCCCCHHHHHHHHHHHHhcccHHHHHHHHHhhhhhhccC
Confidence            4899999999999999999999999999999999999999999999999999999998754

>d1k1va_ a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Mafg
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=3.2e-22  Score=127.17  Aligned_cols=41  Identities=71%  Similarity=1.183  Sum_probs=40.1

Q ss_pred             CChhhhhcccHHHHHHHHHhCCCCHHHHHHHHHHHhhhhchHH
Q psy6769          54 ISDDDLVTISVRDLNRQLKMRGLSREDIIKMKQRRRTLKNRGY   96 (164)
Q Consensus        54 fSDeeLvsmsVreLN~lLk~~gLs~eev~~LKqrRRtLKNRgY   96 (164)
                      +|||+|++|||||||++|  +|+|++++.+|||+|||||||||
T Consensus         1 lsDe~L~~~svReLN~~L--rgl~keev~~lKqrRRTLKNRGY   41 (41)
T d1k1va_           1 LTDEELVTMSVRELNQHL--RGLSKEEIIQLKQRRRTLKNRGY   41 (41)
T ss_dssp             CCHHHHHHSCHHHHHHHH--TTSCHHHHHHHHHHHHHHTTSCC
T ss_pred             CCHHHHhhCcHHHHHHHH--cCCCHHHHHHHHHHHHhhhcCCC
Confidence            699999999999999999  89999999999999999999998

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=91.46  E-value=0.23  Score=33.97  Aligned_cols=24  Identities=25%  Similarity=0.555  Sum_probs=12.1

Q ss_pred             HHHHhCC--CCHHHHHHHHHHHhhhh
Q psy6769          69 RQLKMRG--LSREDIIKMKQRRRTLK   92 (164)
Q Consensus        69 ~lLk~~g--Ls~eev~~LKqrRRtLK   92 (164)
                      .-|+.+|  +.-+++..+-+.||.+.
T Consensus        16 ~~l~~R~~~~~ld~i~~ld~~rr~l~   41 (110)
T d1seta1          16 RAIREKGVALDLEALLALDREVQELK   41 (110)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCccCHHHHHHHHHHHHHHH
Confidence            3344444  33455555555555554

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.69  E-value=0.77  Score=30.16  Aligned_cols=34  Identities=15%  Similarity=0.060  Sum_probs=22.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6769         114 EKSQEYQDMELMEQDCNLMREELHAYSLKCEALI  147 (164)
Q Consensus       114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~  147 (164)
                      -+..|+.+.+.|..++..+.++.+.+.+++..|.
T Consensus        53 yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~   86 (88)
T d1nkpa_          53 YILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG   86 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3455556666666667777777777777666654

>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EB1 dimerisation domain-like
superfamily: EB1 dimerisation domain-like
family: EB1 dimerisation domain-like
domain: Microtubule-associated protein EB1, C-terminal dimerization domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.97  E-value=3.3  Score=26.31  Aligned_cols=41  Identities=12%  Similarity=0.160  Sum_probs=35.4

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy6769         114 EKSQEYQDMELMEQDCNLMREELHAYSLKCEALIKFAAKHK  154 (164)
Q Consensus       114 e~~~L~~qie~L~~E~~~l~~E~d~~K~k~e~L~~~~~~~~  154 (164)
                      ++..|..++..|+.....+.+|||-|=.|+...-=+|....
T Consensus         2 e~~~L~~ei~elk~~v~~lEkERdFYF~KLRdIEilcQ~~e   42 (59)
T d1wu9a1           2 EAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENE   42 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence            56788889999999999999999999999988777776643