Psyllid ID: psy6788

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-
Protein Sequence
MEGAESKVPPVQFPDIKRPEDVVQMIMKDELKFGVLIGLIEVGEVSNREVVNTILHLAIPV
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHccccEEEEEEEEEEEEcccccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHHHccccEEEEEEEEEEccccccEEEHHEEEEcccc
Coil and Loop (DISEMBL)
megaeskvppvqfpdikrpeDVVQMIMKDELKFGVLIGLIEVGEVSNREVVNTILHLAIPV
Flexible Loop (DISEMBL)
megaeskvppvqfpdikrpEDVVQMIMKDELKFGVLIGLIevgevsnrevvntilhlaipv
Low Complexity Region (SEG)
MEGAESKVPPVQFPDIKRPEDVVQMIMKDELKFGVLIGLIEVGEVSNREVVNTILHLAIPV
Disordered region (IsUnstruct)
********************DVVQMIMKDELKFGVLIGLIEVGEVSNREVVNTILHLAI**
Disordered Region (DISOPRED)
**************DIKRPEDVVQMIMKDELKFGVLIGLIEVGEVSNREVVNTILHLAIPV
Disordered Region (DISEMBL)
*********PVQFPDIKRPEDVVQMIMKDELKFGVLIGLIEVGEVSNREVVNTILHLAIPV
Disordered Region (DISPRO)
*******VPPVQFPDIKRPEDVVQMIMKDELKFGVLIGLIEVGEVSNREVVNTILHLAIPV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEGAESKVPPVQFPDIKRPEDVVQMIMKDELKFGVLIGLIEVGEVSNREVVNTILHLAIPV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	61	2.2.26 [Sep-21-2011]
Q8NFP9	2946	Neurobeachin OS=Homo sapi	yes	N/A	0.475	0.009	0.655	0.0002
Q9EPN1	2936	Neurobeachin OS=Mus muscu	yes	N/A	0.475	0.009	0.655	0.0002

>sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/29 (65%), Positives = 26/29 (89%)

Query: 31  LKFGVLIGLIEVGEVSNREVVNTILHLAI 59
           +KF VLIGLI+VGEVSNR++V T+L+L +
Sbjct: 72  MKFAVLIGLIQVGEVSNRDIVETVLNLLV 100

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins.
Homo sapiens (taxid: 9606)

>sp|Q9EPN1|NBEA_MOUSE Neurobeachin OS=Mus musculus GN=Nbea PE=1 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/29 (65%), Positives = 26/29 (89%)

Query: 31 LKFGVLIGLIEVGEVSNREVVNTILHLAI 59
          +KF VLIGLI+VGEVSNR++V T+L+L +
Sbjct: 62 MKFAVLIGLIQVGEVSNRDIVETVLNLLV 90

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. May have a role in membrane trafficking.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	61
307205105	309	hypothetical protein EAI_05319 [Harpegna	0.852	0.168	0.740	5e-14
380020287	2983	PREDICTED: neurobeachin-like [Apis flore	0.885	0.018	0.714	2e-13
350417191	3204	PREDICTED: neurobeachin-like [Bombus imp	0.885	0.016	0.714	2e-13
383855622	3257	PREDICTED: neurobeachin-like [Megachile	0.885	0.016	0.714	2e-13
328785725	81	PREDICTED: hypothetical protein LOC10057	0.852	0.641	0.740	3e-13
340715018	3204	PREDICTED: neurobeachin-like [Bombus ter	0.885	0.016	0.696	3e-13
307174187	178	hypothetical protein EAG_03602 [Camponot	0.852	0.292	0.740	5e-13
347963011	3676	AGAP000017-PA [Anopheles gambiae str. PE	0.803	0.013	0.725	4e-12
357605320	89	hypothetical protein KGM_13254 [Danaus p	0.803	0.550	0.725	5e-12
242005015	69	hypothetical protein Phum_PHUM054480 [Pe	0.918	0.811	0.660	1e-11

>gi|307205105|gb|EFN83570.1| hypothetical protein EAI_05319 [Harpegnathos saltator]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/54 (74%), Positives = 44/54 (81%), Gaps = 2/54 (3%)

Query: 4  AESKVPPVQFPDIKRPEDVVQMIMKDELKFGVLIGLIEVGEVSNREVVNTILHL 57
          A+ K PP  F DIKRPE+VV M M D LKF VLIGLIEVG+VSNREVVNT+LHL
Sbjct: 2  ADLKSPP--FSDIKRPEEVVAMAMNDSLKFAVLIGLIEVGQVSNREVVNTVLHL 53

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020287|ref|XP_003694021.1| PREDICTED: neurobeachin-like [Apis florea]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/56 (71%), Positives = 45/56 (80%), Gaps = 2/56 (3%)

Query: 4  AESKVPPVQFPDIKRPEDVVQMIMKDELKFGVLIGLIEVGEVSNREVVNTILHLAI 59
          A+ K PP  F DIKRPE+VV M M D LKF VLIGLIEVG+VSNREVVNT+LHL +
Sbjct: 2  ADMKSPP--FSDIKRPEEVVAMAMNDSLKFAVLIGLIEVGQVSNREVVNTVLHLLV 55

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417191|ref|XP_003491301.1| PREDICTED: neurobeachin-like [Bombus impatiens]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/56 (71%), Positives = 45/56 (80%), Gaps = 2/56 (3%)

Query: 4  AESKVPPVQFPDIKRPEDVVQMIMKDELKFGVLIGLIEVGEVSNREVVNTILHLAI 59
          A+ K PP  F DIKRPE+VV M M D LKF VLIGLIEVG+VSNREVVNT+LHL +
Sbjct: 2  ADMKSPP--FSDIKRPEEVVAMAMNDSLKFAVLIGLIEVGQVSNREVVNTVLHLLV 55

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855622|ref|XP_003703309.1| PREDICTED: neurobeachin-like [Megachile rotundata]

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/56 (71%), Positives = 45/56 (80%), Gaps = 2/56 (3%)

Query: 4  AESKVPPVQFPDIKRPEDVVQMIMKDELKFGVLIGLIEVGEVSNREVVNTILHLAI 59
          A+ K PP  F DIKRPE+VV M M D LKF VLIGLIEVG+VSNREVVNT+LHL +
Sbjct: 2  ADMKSPP--FSDIKRPEEVVAMAMNDSLKFAVLIGLIEVGQVSNREVVNTVLHLLV 55

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785725|ref|XP_003250647.1| PREDICTED: hypothetical protein LOC100577083 [Apis mellifera]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/54 (74%), Positives = 44/54 (81%), Gaps = 2/54 (3%)

Query: 4  AESKVPPVQFPDIKRPEDVVQMIMKDELKFGVLIGLIEVGEVSNREVVNTILHL 57
          A+ K PP  F DIKRPE+VV M M D LKF VLIGLIEVG+VSNREVVNT+LHL
Sbjct: 2  ADIKSPP--FSDIKRPEEVVAMAMNDSLKFAVLIGLIEVGQVSNREVVNTVLHL 53

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715018|ref|XP_003396018.1| PREDICTED: neurobeachin-like [Bombus terrestris]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/56 (69%), Positives = 45/56 (80%), Gaps = 2/56 (3%)

Query: 4  AESKVPPVQFPDIKRPEDVVQMIMKDELKFGVLIGLIEVGEVSNREVVNTILHLAI 59
          A+ K PP  F DIKRPE+VV M M D LKF VLIGL+EVG+VSNREVVNT+LHL +
Sbjct: 2  ADMKSPP--FSDIKRPEEVVAMAMNDSLKFAVLIGLVEVGQVSNREVVNTVLHLLV 55

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174187|gb|EFN64832.1| hypothetical protein EAG_03602 [Camponotus floridanus]

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/54 (74%), Positives = 44/54 (81%), Gaps = 2/54 (3%)

Query: 4  AESKVPPVQFPDIKRPEDVVQMIMKDELKFGVLIGLIEVGEVSNREVVNTILHL 57
          A+ K PP  F DIKRPE+VV M M D LKF VLIGLIEVG+VSNREVVNT+LHL
Sbjct: 2  ADLKSPP--FSDIKRPEEVVAMAMNDSLKFAVLIGLIEVGQVSNREVVNTVLHL 53

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347963011|ref|XP_311142.5| AGAP000017-PA [Anopheles gambiae str. PEST] gi|333467401|gb|EAA06488.5| AGAP000017-PA [Anopheles gambiae str. PEST]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/51 (72%), Positives = 43/51 (84%), Gaps = 2/51 (3%)

Query: 9  PPVQFPDIKRPEDVVQMIMKDELKFGVLIGLIEVGEVSNREVVNTILHLAI 59
          PP+   DIKRPE+VV+M M D LKF VLIGLIEVG+VSNREVVNT+LHL +
Sbjct: 7  PPL--CDIKRPEEVVKMSMTDNLKFAVLIGLIEVGQVSNREVVNTVLHLLV 55

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357605320|gb|EHJ64557.1| hypothetical protein KGM_13254 [Danaus plexippus]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 42/51 (82%), Gaps = 2/51 (3%)

Query: 7  KVPPVQFPDIKRPEDVVQMIMKDELKFGVLIGLIEVGEVSNREVVNTILHL 57
          K PP  F DIKRPE+VV+M   D LKF VLIGLIEVG+V+NREVVNT+LHL
Sbjct: 5  KSPP--FSDIKRPEEVVRMTTNDSLKFAVLIGLIEVGQVTNREVVNTVLHL 53

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242005015|ref|XP_002423370.1| hypothetical protein Phum_PHUM054480 [Pediculus humanus corporis] gi|212506414|gb|EEB10632.1| hypothetical protein Phum_PHUM054480 [Pediculus humanus corporis]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 44/56 (78%)

Query: 6  SKVPPVQFPDIKRPEDVVQMIMKDELKFGVLIGLIEVGEVSNREVVNTILHLAIPV 61
          ++V P    DIKRPE+VV M M D LKF +LIGLIEVG+VSNREVVNT+LHL I +
Sbjct: 2  TEVEPPPIGDIKRPEEVVAMAMNDNLKFALLIGLIEVGQVSNREVVNTVLHLKIYI 57

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	61
MGI|MGI:1347075	2936	Nbea "neurobeachin" [Mus muscu	0.475	0.009	0.655	0.00075
UNIPROTKB|Q8NFP9	2946	NBEA "Neurobeachin" [Homo sapi	0.475	0.009	0.655	0.00076

MGI|MGI:1347075 Nbea "neurobeachin" [Mus musculus (taxid:10090)]

 Score = 103 (41.3 bits), Expect = 0.00075, P = 0.00075
 Identities = 19/29 (65%), Positives = 26/29 (89%)

Query:    31 LKFGVLIGLIEVGEVSNREVVNTILHLAI 59
             +KF VLIGLI+VGEVSNR++V T+L+L +
Sbjct:    62 MKFAVLIGLIQVGEVSNRDIVETVLNLLV 90

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006605 "protein targeting" evidence=ISS

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=NAS

GO:0008104 "protein localization" evidence=IDA

GO:0012505 "endomembrane system" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=NAS

GO:0051018 "protein kinase A binding" evidence=NAS

UNIPROTKB|Q8NFP9 NBEA "Neurobeachin" [Homo sapiens (taxid:9606)]

 Score = 103 (41.3 bits), Expect = 0.00076, P = 0.00076
 Identities = 19/29 (65%), Positives = 26/29 (89%)

Query:    31 LKFGVLIGLIEVGEVSNREVVNTILHLAI 59
             +KF VLIGLI+VGEVSNR++V T+L+L +
Sbjct:    72 MKFAVLIGLIQVGEVSNRDIVETVLNLLV 100


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.141   0.390    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       61        61   0.00091  102 3  11 22  0.39    28
                                                     29  0.39    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  349 (37 KB)
  Total size of DFA:  59 KB (2059 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:02
  No. of threads or processors used:  24
  Search cpu time:  6.90u 0.08s 6.98t   Elapsed:  00:00:33
  Total cpu time:  6.90u 0.08s 6.98t   Elapsed:  00:00:36
  Start:  Thu Aug 15 13:18:48 2013   End:  Thu Aug 15 13:19:24 2013

GO:0008104 "protein localization" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0012505 "endomembrane system" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9EPN1	NBEA_MOUSE	No assigned EC number	0.6551	0.4754	0.0098	yes	N/A
Q8NFP9	NBEA_HUMAN	No assigned EC number	0.6551	0.4754	0.0098	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00