Psyllid ID: psy6794

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
MRESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNIETVEKLTPYVRDRRARY
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHccccEEEccccccccccccccccccccccccccccccHHHHcccccccccccccccccccEEEEccccccHHHHHHHHHHccccEEEcccccccccccccccccccEEEEEcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccccHHHHHHHHHHHHHccccEEEEccccccccccccEEEcccccccHHHHHHHHHHHcccHHHcccccccccccccEEEcccccHHHHHHHHHHHHccccEEEEHccccccccccccccccEEEEEEEEcccccccccccHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mressimlglgetdAEVQQTLDDLLAAGVdcvtlgqymqptkkhLKVSYretfvfqpepkqhyLKEYDGklkrekgenerlrlppwlktkiptgsQFAKVKEQLRTLNLhtvceearcpnigecwgggehgtstATIMSGLDVFAHNIETVEKLTPYVRDRRARY
Flexible Loop (DISEMBL)
mressimlglgETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETfvfqpepkqhylkeydgklkrekgenerlrlppwlktkiptgsqFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNietvekltpyvrdrrary
Low Complexity Region (SEG)
MRESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNIETVEKLTPYVRDRRARY
Disordered region (IsUnstruct)
***************EVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPE***HYL******************LPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNIETVEKLTPYV*******
Disordered Region (DISOPRED)
MRESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDG***************PWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNIETVEKLTPYV*******
Disordered Region (DISEMBL)
MRESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNIETVEKLTPYVRDRRARY
Disordered Region (DISPRO)
*RESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNIETVEKLTPYVRDRRARY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNIETVEKLTPYVRDRRARY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	165	2.2.26 [Sep-21-2011]
Q16W22	393	Lipoyl synthase, mitochon	N/A	N/A	0.533	0.223	0.681	6e-32
Q7JQW6	377	Lipoyl synthase, mitochon	yes	N/A	0.521	0.228	0.697	6e-32
B4IAA7	377	Lipoyl synthase, mitochon	N/A	N/A	0.533	0.233	0.681	1e-31
B3NIL9	379	Lipoyl synthase, mitochon	N/A	N/A	0.533	0.232	0.681	2e-31
B4IUG3	379	Lipoyl synthase 1, mitoch	N/A	N/A	0.521	0.226	0.686	4e-31
B4PF83	379	Lipoyl synthase 2, mitoch	N/A	N/A	0.521	0.226	0.686	4e-31
B3M996	376	Lipoyl synthase, mitochon	N/A	N/A	0.533	0.234	0.681	4e-31
B0WAU6	380	Lipoyl synthase, mitochon	N/A	N/A	0.521	0.226	0.697	5e-31
Q2LYK1	374	Lipoyl synthase, mitochon	yes	N/A	0.533	0.235	0.681	7e-31
B4MXR6	372	Lipoyl synthase, mitochon	N/A	N/A	0.533	0.236	0.670	1e-30

>sp|Q16W22|LIAS_AEDAE Lipoyl synthase, mitochondrial OS=Aedes aegypti GN=AAEL009368 PE=3 SV=1

 Score =  136 bits (342), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 71/88 (80%)

Query: 51  ETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLH 110
           + FV  P   +    +Y+GKL+REKGEN+RLRLPPWLKTKIP G  F+++K+QLR L L 
Sbjct: 49  QDFVQNPSYNRDDWTDYEGKLRREKGENDRLRLPPWLKTKIPMGKNFSRIKDQLRELKLA 108

Query: 111 TVCEEARCPNIGECWGGGEHGTSTATIM 138
           TVCEEA+CPNIGECWGGGEHGT TATIM
Sbjct: 109 TVCEEAKCPNIGECWGGGEHGTQTATIM 136

Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
Aedes aegypti (taxid: 7159)
EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: 8

>sp|Q7JQW6|LIAS_DROME Lipoyl synthase, mitochondrial OS=Drosophila melanogaster GN=Las PE=1 SV=2

 Score =  136 bits (342), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 70/86 (81%)

Query: 53  FVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTV 112
           FV  P+  ++  ++YDGKL+REKGE +RLRLPPWLKT IP G  +AK+K Q+R L L TV
Sbjct: 43  FVQNPDNTRNEWEQYDGKLRREKGEEQRLRLPPWLKTTIPVGKNYAKIKAQMRELKLSTV 102

Query: 113 CEEARCPNIGECWGGGEHGTSTATIM 138
           CEEARCPNIGECWGGGEHGT TATIM
Sbjct: 103 CEEARCPNIGECWGGGEHGTQTATIM 128

Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|B4IAA7|LIAS_DROSE Lipoyl synthase, mitochondrial OS=Drosophila sechellia GN=Las PE=3 SV=1

 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 70/88 (79%)

Query: 51  ETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLH 110
           + FV  P+  +   ++YDGKL+REKGE +RLRLPPWLKT IP G  +AK+K Q+R L L 
Sbjct: 41  QDFVQNPDNTRSEWEQYDGKLRREKGEEQRLRLPPWLKTTIPVGKNYAKIKAQMRELKLS 100

Query: 111 TVCEEARCPNIGECWGGGEHGTSTATIM 138
           TVCEEARCPNIGECWGGGEHGT TATIM
Sbjct: 101 TVCEEARCPNIGECWGGGEHGTQTATIM 128

Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.

Drosophila sechellia (taxid: 7238)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|B3NIL9|LIAS_DROER Lipoyl synthase, mitochondrial OS=Drosophila erecta GN=Las PE=3 SV=1

 Score =  134 bits (338), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 70/88 (79%)

Query: 51  ETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLH 110
           + FV  PE  +   ++Y+GKL+REKGE +RLRLPPWLKT IP G  +AK+K Q+R L L 
Sbjct: 44  QDFVQNPENSRSEWEKYEGKLRREKGEEQRLRLPPWLKTTIPVGKNYAKIKAQMRELKLS 103

Query: 111 TVCEEARCPNIGECWGGGEHGTSTATIM 138
           TVCEEARCPNIGECWGGGEHGT TATIM
Sbjct: 104 TVCEEARCPNIGECWGGGEHGTQTATIM 131

Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.

Drosophila erecta (taxid: 7220)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|B4IUG3|LIAS1_DROYA Lipoyl synthase 1, mitochondrial OS=Drosophila yakuba GN=Las1 PE=3 SV=1

 Score =  133 bits (335), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 68/86 (79%)

Query: 53  FVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTV 112
           FV  P+  +   + Y+GKL+REKGE +RLRLPPWLKT IP G  +AK+K Q+R L L TV
Sbjct: 46  FVQNPDNSRSEWENYEGKLRREKGEEQRLRLPPWLKTTIPVGKNYAKIKAQMRELKLSTV 105

Query: 113 CEEARCPNIGECWGGGEHGTSTATIM 138
           CEEARCPNIGECWGGGEHGT TATIM
Sbjct: 106 CEEARCPNIGECWGGGEHGTQTATIM 131

Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.

Drosophila yakuba (taxid: 7245)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|B4PF83|LIAS2_DROYA Lipoyl synthase 2, mitochondrial OS=Drosophila yakuba GN=Las2 PE=3 SV=1

 Score =  133 bits (335), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 68/86 (79%)

Query: 53  FVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTV 112
           FV  P+  +   + Y+GKL+REKGE +RLRLPPWLKT IP G  +AK+K Q+R L L TV
Sbjct: 46  FVQNPDNSRSEWENYEGKLRREKGEEQRLRLPPWLKTTIPVGKNYAKIKAQMRELKLSTV 105

Query: 113 CEEARCPNIGECWGGGEHGTSTATIM 138
           CEEARCPNIGECWGGGEHGT TATIM
Sbjct: 106 CEEARCPNIGECWGGGEHGTQTATIM 131

Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.

Drosophila yakuba (taxid: 7245)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|B3M996|LIAS_DROAN Lipoyl synthase, mitochondrial OS=Drosophila ananassae GN=Las PE=3 SV=1

 Score =  133 bits (335), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 69/88 (78%)

Query: 51  ETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLH 110
           + FV  P+  +   + Y+GKL+REKGE +RLRLPPWLKT IP G  +AK+K QLR L L 
Sbjct: 41  QDFVQNPDYSKSEWENYEGKLRREKGEEQRLRLPPWLKTTIPMGKNYAKIKNQLRELKLS 100

Query: 111 TVCEEARCPNIGECWGGGEHGTSTATIM 138
           TVCEEARCPNIGECWGGGEHGT TATIM
Sbjct: 101 TVCEEARCPNIGECWGGGEHGTQTATIM 128

Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.

Drosophila ananassae (taxid: 7217)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|B0WAU6|LIAS_CULQU Lipoyl synthase, mitochondrial OS=Culex quinquefasciatus GN=CPIJ004250 PE=3 SV=1

 Score =  133 bits (334), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 68/86 (79%)

Query: 53  FVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTV 112
           FV  P   +     Y+GKLKREKGE +RLRLPPWLKTKIP G  F+++K+QLR L L TV
Sbjct: 44  FVQNPSYNREDWSAYEGKLKREKGEQDRLRLPPWLKTKIPMGKNFSRIKDQLRELKLATV 103

Query: 113 CEEARCPNIGECWGGGEHGTSTATIM 138
           CEEA+CPNIGECWGGGEHGT TATIM
Sbjct: 104 CEEAKCPNIGECWGGGEHGTQTATIM 129

Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.

Culex quinquefasciatus (taxid: 7176)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q2LYK1|LIAS_DROPS Lipoyl synthase, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=Las PE=3 SV=1

 Score =  132 bits (333), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 69/88 (78%)

Query: 51  ETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLH 110
           + FV  P+  +   + YDGKL+REKGE +RLRLPPWLKT IP G  + K+KEQLR L L 
Sbjct: 39  QDFVQNPDNLKSVGENYDGKLRREKGEEQRLRLPPWLKTTIPMGKNYTKIKEQLRELKLS 98

Query: 111 TVCEEARCPNIGECWGGGEHGTSTATIM 138
           TVCEEARCPNIGECWGGGE+GT TATIM
Sbjct: 99  TVCEEARCPNIGECWGGGENGTQTATIM 126

Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|B4MXR6|LIAS_DROWI Lipoyl synthase, mitochondrial OS=Drosophila willistoni GN=Las PE=3 SV=1

 Score =  132 bits (332), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 68/88 (77%)

Query: 51  ETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLH 110
           + F+  P   ++    YDGKL+REK E +RLRLPPWLKT IP G  +AK+K+QLR L L 
Sbjct: 41  QDFIQNPNNTKNEWDNYDGKLRREKVEEQRLRLPPWLKTTIPMGKNYAKIKDQLRELKLS 100

Query: 111 TVCEEARCPNIGECWGGGEHGTSTATIM 138
           TVCEEARCPNIGECWGGGEHGT TATIM
Sbjct: 101 TVCEEARCPNIGECWGGGEHGTQTATIM 128

Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.

Drosophila willistoni (taxid: 7260)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
312375110	408	hypothetical protein AND_14544 [Anophele	0.454	0.183	0.704	7e-31
193669175	375	PREDICTED: lipoyl synthase 1, mitochondr	0.412	0.181	0.833	7e-31
91081119	372	PREDICTED: similar to Lipoic acid syntha	0.533	0.236	0.663	1e-30
239791521	192	ACYPI001804 [Acyrthosiphon pisum]	0.448	0.385	0.810	3e-30
158293213	400	AGAP010568-PA [Anopheles gambiae str. PE	0.533	0.22	0.693	3e-30
16198015	380	LD24887p [Drosophila melanogaster] gi|28	0.521	0.226	0.697	3e-30
157123026	393	lipoic acid synthetase [Aedes aegypti] g	0.533	0.223	0.681	3e-30
221513272	377	lipoic acid synthase [Drosophila melanog	0.521	0.228	0.697	3e-30
195591855	372	GD12187 [Drosophila simulans] gi|1941976	0.587	0.260	0.628	4e-30
195348257	377	GM22215 [Drosophila sechellia] gi|306755	0.533	0.233	0.681	5e-30

>gi|312375110|gb|EFR22540.1| hypothetical protein AND_14544 [Anopheles darlingi]

 Score =  138 bits (348), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 70/88 (79%)

Query: 51  ETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLH 110
           + FV  P+  +     Y+GKL+REKGENERLRLPPWLKTKIP G  F ++KEQLR L L 
Sbjct: 58  QDFVQNPDYNRENWSAYEGKLRREKGENERLRLPPWLKTKIPMGKNFTRIKEQLRELKLA 117

Query: 111 TVCEEARCPNIGECWGGGEHGTSTATIM 138
           TVCEEA+CPNIGECWGGGEHGT TATIM
Sbjct: 118 TVCEEAKCPNIGECWGGGEHGTQTATIM 145

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193669175|ref|XP_001945618.1| PREDICTED: lipoyl synthase 1, mitochondrial-like [Acyrthosiphon pisum]

 Score =  138 bits (348), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 60/72 (83%), Positives = 66/72 (91%)

Query: 67  YDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWG 126
           Y GKL+R KGE +RLRLPPWLKTKIPTG  F+K+KEQLR LNLHTVCEEARCPNIGECWG
Sbjct: 56  YSGKLRRAKGEEDRLRLPPWLKTKIPTGENFSKIKEQLRDLNLHTVCEEARCPNIGECWG 115

Query: 127 GGEHGTSTATIM 138
           GG+HGT+TATIM
Sbjct: 116 GGKHGTATATIM 127

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91081119|ref|XP_975527.1| PREDICTED: similar to Lipoic acid synthase CG5231-PA [Tribolium castaneum] gi|270006027|gb|EFA02475.1| hypothetical protein TcasGA2_TC008166 [Tribolium castaneum]

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 73/92 (79%), Gaps = 4/92 (4%)

Query: 51  ETFVFQPEP----KQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRT 106
           + F+  P+P         K+Y+G+LKR K E+ RLRLPPWLKT IP G +F+++KEQLR 
Sbjct: 40  QDFIKSPDPVLKEDSEAWKDYNGRLKRTKSESSRLRLPPWLKTSIPKGKKFSELKEQLRN 99

Query: 107 LNLHTVCEEARCPNIGECWGGGEHGTSTATIM 138
           LNLHTVCEEARCPNIGECWGGGEHGT+TATIM
Sbjct: 100 LNLHTVCEEARCPNIGECWGGGEHGTATATIM 131

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239791521|dbj|BAH72214.1| ACYPI001804 [Acyrthosiphon pisum]

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 60/74 (81%), Positives = 67/74 (90%)

Query: 65  KEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGEC 124
           + Y GKL+R KGE +RLRLPPWLKTKIPTG  F+K+KEQLR LNLHTVCEEARCPNIGEC
Sbjct: 54  ENYSGKLRRAKGEEDRLRLPPWLKTKIPTGENFSKIKEQLRDLNLHTVCEEARCPNIGEC 113

Query: 125 WGGGEHGTSTATIM 138
           WGGG+HGT+TATIM
Sbjct: 114 WGGGKHGTATATIM 127

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158293213|ref|XP_314540.4| AGAP010568-PA [Anopheles gambiae str. PEST] gi|157016850|gb|EAA09970.4| AGAP010568-PA [Anopheles gambiae str. PEST]

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/88 (69%), Positives = 70/88 (79%)

Query: 51  ETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLH 110
           + FV  P+  +     Y+GKL+REKGEN+RLRLPPWLKTKIP G  F ++KEQLR L L 
Sbjct: 53  QDFVQHPDYNKEDWTAYEGKLRREKGENDRLRLPPWLKTKIPMGKDFTRIKEQLRELKLA 112

Query: 111 TVCEEARCPNIGECWGGGEHGTSTATIM 138
           TVCEEA+CPNIGECWGGGEHGT TATIM
Sbjct: 113 TVCEEAKCPNIGECWGGGEHGTQTATIM 140

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|16198015|gb|AAL13786.1| LD24887p [Drosophila melanogaster] gi|28380901|gb|AAO41414.1| RH26374p [Drosophila melanogaster] gi|220954722|gb|ACL89904.1| Las-PC [synthetic construct]

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 70/86 (81%)

Query: 53  FVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTV 112
           FV  P+  ++  ++YDGKL+REKGE +RLRLPPWLKT IP G  +AK+K Q+R L L TV
Sbjct: 46  FVQNPDNTRNEWEQYDGKLRREKGEEQRLRLPPWLKTTIPVGKNYAKIKAQMRELKLSTV 105

Query: 113 CEEARCPNIGECWGGGEHGTSTATIM 138
           CEEARCPNIGECWGGGEHGT TATIM
Sbjct: 106 CEEARCPNIGECWGGGEHGTQTATIM 131

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157123026|ref|XP_001659989.1| lipoic acid synthetase [Aedes aegypti] gi|122094084|sp|Q16W22.1|LIAS_AEDAE RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic acid synthase; Flags: Precursor gi|108874549|gb|EAT38774.1| AAEL009368-PA [Aedes aegypti]

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 71/88 (80%)

Query: 51  ETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLH 110
           + FV  P   +    +Y+GKL+REKGEN+RLRLPPWLKTKIP G  F+++K+QLR L L 
Sbjct: 49  QDFVQNPSYNRDDWTDYEGKLRREKGENDRLRLPPWLKTKIPMGKNFSRIKDQLRELKLA 108

Query: 111 TVCEEARCPNIGECWGGGEHGTSTATIM 138
           TVCEEA+CPNIGECWGGGEHGT TATIM
Sbjct: 109 TVCEEAKCPNIGECWGGGEHGTQTATIM 136

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221513272|ref|NP_524183.2| lipoic acid synthase [Drosophila melanogaster] gi|306756317|sp|Q7JQW6.2|LIAS_DROME RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic acid synthase; Flags: Precursor gi|220902670|gb|AAF51596.2| lipoic acid synthase [Drosophila melanogaster]

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 70/86 (81%)

Query: 53  FVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTV 112
           FV  P+  ++  ++YDGKL+REKGE +RLRLPPWLKT IP G  +AK+K Q+R L L TV
Sbjct: 43  FVQNPDNTRNEWEQYDGKLRREKGEEQRLRLPPWLKTTIPVGKNYAKIKAQMRELKLSTV 102

Query: 113 CEEARCPNIGECWGGGEHGTSTATIM 138
           CEEARCPNIGECWGGGEHGT TATIM
Sbjct: 103 CEEARCPNIGECWGGGEHGTQTATIM 128

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195591855|ref|XP_002085654.1| GD12187 [Drosophila simulans] gi|194197663|gb|EDX11239.1| GD12187 [Drosophila simulans]

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 73/97 (75%)

Query: 51  ETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLH 110
           + FV  P+  +   ++YDGKL+REKGE +RLRLPPWLKT IP G  +AK+K Q+R L L 
Sbjct: 44  QDFVQNPDNTRSEWEQYDGKLRREKGEEQRLRLPPWLKTTIPVGKNYAKIKAQMRELKLS 103

Query: 111 TVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHN 147
           TVCEEARCPNIGECWGGGEHGT TATIM    +F  +
Sbjct: 104 TVCEEARCPNIGECWGGGEHGTQTATIMRLSILFGED 140

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195348257|ref|XP_002040667.1| GM22215 [Drosophila sechellia] gi|306755881|sp|B4IAA7.1|LIAS_DROSE RecName: Full=Lipoyl synthase, mitochondrial; AltName: Full=Lipoate synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoic acid synthase; Flags: Precursor gi|194122177|gb|EDW44220.1| GM22215 [Drosophila sechellia]

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 70/88 (79%)

Query: 51  ETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLH 110
           + FV  P+  +   ++YDGKL+REKGE +RLRLPPWLKT IP G  +AK+K Q+R L L 
Sbjct: 41  QDFVQNPDNTRSEWEQYDGKLRREKGEEQRLRLPPWLKTTIPVGKNYAKIKAQMRELKLS 100

Query: 111 TVCEEARCPNIGECWGGGEHGTSTATIM 138
           TVCEEARCPNIGECWGGGEHGT TATIM
Sbjct: 101 TVCEEARCPNIGECWGGGEHGTQTATIM 128

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
UNIPROTKB|E2R257	373	LIAS "Lipoyl synthase, mitocho	0.430	0.190	0.753	1.3e-34
UNIPROTKB|O43766	372	LIAS "Lipoyl synthase, mitocho	0.430	0.190	0.753	1.3e-34
UNIPROTKB|Q5BIP7	372	LIAS "Lipoyl synthase, mitocho	0.430	0.190	0.753	1.7e-34
UNIPROTKB|Q2KIH9	298	LIAS "Lipoyl synthase, mitocho	0.430	0.238	0.753	1.7e-34
UNIPROTKB|I3LGA8	372	LIAS "Lipoyl synthase, mitocho	0.430	0.190	0.739	7.1e-34
FB|FBgn0029158	377	Las "Lipoic acid synthase" [Dr	0.521	0.228	0.697	5.4e-31
WB|WBGene00010809	354	M01F1.3 [Caenorhabditis elegan	0.448	0.209	0.551	3.7e-30
POMBASE|SPBC8D2.15	370	lip5 "mitochondrial lipoic aci	0.436	0.194	0.561	7.2e-30
UNIPROTKB|F1NEN8	339	LIAS "Uncharacterized protein"	0.581	0.283	0.626	2.8e-27
ZFIN|ZDB-GENE-040426-1528	399	lias "lipoic acid synthetase"	0.436	0.180	0.756	4.5e-27

UNIPROTKB|E2R257 LIAS "Lipoyl synthase, mitochondrial" [Canis lupus familiaris (taxid:9615)]

 Score = 302 (111.4 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
 Identities = 55/73 (75%), Positives = 61/73 (83%)

Query:    66 EYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECW 125
             EY G LKR+KGE  RLRLPPWLKT+IP G  + K+K  LR LNLHTVCEEARCPNIGECW
Sbjct:    61 EYKGNLKRQKGE--RLRLPPWLKTEIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECW 118

Query:   126 GGGEHGTSTATIM 138
             GGGE+ T+TATIM
Sbjct:   119 GGGEYATATATIM 131

GO:0005739 "mitochondrion" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0009249 "protein lipoylation" evidence=IEA

GO:0016992 "lipoate synthase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|O43766 LIAS "Lipoyl synthase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 302 (111.4 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
 Identities = 55/73 (75%), Positives = 61/73 (83%)

Query:    66 EYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECW 125
             EY G LKR+KGE  RLRLPPWLKT+IP G  + K+K  LR LNLHTVCEEARCPNIGECW
Sbjct:    61 EYKGNLKRQKGE--RLRLPPWLKTEIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECW 118

Query:   126 GGGEHGTSTATIM 138
             GGGE+ T+TATIM
Sbjct:   119 GGGEYATATATIM 131

GO:0046872 "metal ion binding" evidence=IEA

GO:0009249 "protein lipoylation" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0016992 "lipoate synthase activity" evidence=ISS

GO:0032496 "response to lipopolysaccharide" evidence=ISS

GO:0009107 "lipoate biosynthetic process" evidence=ISS

GO:0006979 "response to oxidative stress" evidence=ISS

GO:0006954 "inflammatory response" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

UNIPROTKB|Q5BIP7 LIAS "Lipoyl synthase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 302 (111.4 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
 Identities = 55/73 (75%), Positives = 61/73 (83%)

Query:    66 EYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECW 125
             EY G LKR+KGE  RLRLPPWLKT+IP G  + K+K  LR LNLHTVCEEARCPNIGECW
Sbjct:    61 EYKGNLKRQKGE--RLRLPPWLKTEIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECW 118

Query:   126 GGGEHGTSTATIM 138
             GGGE+ T+TATIM
Sbjct:   119 GGGEYATATATIM 131

GO:0005739 "mitochondrion" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0009249 "protein lipoylation" evidence=IEA

GO:0016992 "lipoate synthase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q2KIH9 LIAS "Lipoyl synthase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 302 (111.4 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
 Identities = 55/73 (75%), Positives = 61/73 (83%)

Query:    66 EYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECW 125
             EY G LKR+KGE  RLRLPPWLKT+IP G  + K+K  LR LNLHTVCEEARCPNIGECW
Sbjct:    61 EYKGNLKRQKGE--RLRLPPWLKTEIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECW 118

Query:   126 GGGEHGTSTATIM 138
             GGGE+ T+TATIM
Sbjct:   119 GGGEYATATATIM 131

GO:0005739 "mitochondrion" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0009249 "protein lipoylation" evidence=IEA

GO:0016992 "lipoate synthase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|I3LGA8 LIAS "Lipoyl synthase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 299 (110.3 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
 Identities = 54/73 (73%), Positives = 61/73 (83%)

Query:    66 EYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECW 125
             +Y G LKR+KGE  RLRLPPWLKT+IP G  + K+K  LR LNLHTVCEEARCPNIGECW
Sbjct:    61 DYKGNLKRQKGE--RLRLPPWLKTEIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECW 118

Query:   126 GGGEHGTSTATIM 138
             GGGE+ T+TATIM
Sbjct:   119 GGGEYATATATIM 131

GO:0005739 "mitochondrion" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0009249 "protein lipoylation" evidence=IEA

GO:0016992 "lipoate synthase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

FB|FBgn0029158 Las "Lipoic acid synthase" [Drosophila melanogaster (taxid:7227)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 60/86 (69%), Positives = 70/86 (81%)

Query:    53 FVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTV 112
             FV  P+  ++  ++YDGKL+REKGE +RLRLPPWLKT IP G  +AK+K Q+R L L TV
Sbjct:    43 FVQNPDNTRNEWEQYDGKLRREKGEEQRLRLPPWLKTTIPVGKNYAKIKAQMRELKLSTV 102

Query:   113 CEEARCPNIGECWGGGEHGTSTATIM 138
             CEEARCPNIGECWGGGEHGT TATIM
Sbjct:   103 CEEARCPNIGECWGGGEHGTQTATIM 128

GO:0009107 "lipoate biosynthetic process" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0016992 "lipoate synthase activity" evidence=ISS

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

WB|WBGene00010809 M01F1.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 231 (86.4 bits), Expect = 3.7e-30, Sum P(2) = 3.7e-30
 Identities = 43/78 (55%), Positives = 62/78 (79%)

Query:    64 LKEYDGKLKREKGENERLRLPPWLKTK--IPTGSQ-FAKVKEQLRTLNLHTVCEEARCPN 120
             +++Y+GKLK EKG+  RLRLPPWLK +  +P+ ++  +++K+QL+ L L TVC+EARCPN
Sbjct:    40 VEKYEGKLKLEKGDR-RLRLPPWLKKEKILPSENENVSRLKKQLKHLKLATVCQEARCPN 98

Query:   121 IGECWGGGEHGTSTATIM 138
             +GECWGG +   +TATIM
Sbjct:    99 LGECWGGSDDSLATATIM 116

GO:0009107 "lipoate biosynthetic process" evidence=IEA

GO:0016992 "lipoate synthase activity" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

POMBASE|SPBC8D2.15 lip5 "mitochondrial lipoic acid synthetase Lip5 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 226 (84.6 bits), Expect = 7.2e-30, Sum P(2) = 7.2e-30
 Identities = 41/73 (56%), Positives = 52/73 (71%)

Query:    66 EYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECW 125
             E D K++   G   + RLP WLKTK+P G+ F ++K  LR  +LHTVCEEA+CPNIGECW
Sbjct:    54 ELDRKVELPNGSIHK-RLPSWLKTKVPLGTNFNRIKHDLRGSHLHTVCEEAKCPNIGECW 112

Query:   126 GGGEHGTSTATIM 138
             GG +   +TATIM
Sbjct:   113 GGKDKSRATATIM 125

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0009107 "lipoate biosynthetic process" evidence=ISS

GO:0009249 "protein lipoylation" evidence=ISO

GO:0016992 "lipoate synthase activity" evidence=ISO;ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

UNIPROTKB|F1NEN8 LIAS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 62/99 (62%), Positives = 71/99 (71%)

Query:    41 TKKHLKVSYR-ETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAK 99
             TKK L+     E FV      +    EY G LKR+KGE  RLRLPPWLKT+IP G  + K
Sbjct:     2 TKKILQTGPDLEDFVSGDLADKSVWAEYKGNLKRQKGE--RLRLPPWLKTEIPMGKNYNK 59

Query:   100 VKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIM 138
             +K  LR+LNLHTVCEEARCPNIGECWGGGE+ T+TATIM
Sbjct:    60 LKNTLRSLNLHTVCEEARCPNIGECWGGGEYATATATIM 98

GO:0016992 "lipoate synthase activity" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1528 lias "lipoic acid synthetase" [Danio rerio (taxid:7955)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 56/74 (75%), Positives = 62/74 (83%)

Query:    65 KEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGEC 124
             +EY G LKREKGE  RLRLPPWLKT+IP G  + K+K  LR LNLHTVCEEARCPNIGEC
Sbjct:    82 EEYRGNLKREKGE--RLRLPPWLKTEIPIGKNYNKLKNTLRELNLHTVCEEARCPNIGEC 139

Query:   125 WGGGEHGTSTATIM 138
             WGGGE+ T+TATIM
Sbjct:   140 WGGGEYATATATIM 153

GO:0003824 "catalytic activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016992 "lipoate synthase activity" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0009107 "lipoate biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0009249 "protein lipoylation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5XIH4	LIAS_RAT	2, ., 8, ., 1, ., 8	0.7534	0.4303	0.1903	yes	N/A
Q99M04	LIAS_MOUSE	2, ., 8, ., 1, ., 8	0.7534	0.4303	0.1903	yes	N/A
Q5BIP7	LIAS_BOVIN	2, ., 8, ., 1, ., 8	0.7534	0.4303	0.1908	yes	N/A
O13642	LIPA_SCHPO	2, ., 8, ., 1, ., 8	0.5616	0.4363	0.1945	yes	N/A
Q6PHG4	LIAS_DANRE	2, ., 8, ., 1, ., 8	0.7567	0.4363	0.1804	yes	N/A
Q7JQW6	LIAS_DROME	2, ., 8, ., 1, ., 8	0.6976	0.5212	0.2281	yes	N/A
Q2LYK1	LIAS_DROPS	2, ., 8, ., 1, ., 8	0.6818	0.5333	0.2352	yes	N/A
C3Y3G4	LIAS_BRAFL	2, ., 8, ., 1, ., 8	0.6621	0.4424	0.1941	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.8.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	165
PLN02428	349	PLN02428, PLN02428, lipoic acid synthase	5e-30
PRK05481	289	PRK05481, PRK05481, lipoyl synthase; Provisional	5e-26
PTZ00413	398	PTZ00413, PTZ00413, lipoate synthase; Provisional	4e-25
COG0320	306	COG0320, LipA, Lipoate synthase [Coenzyme metaboli	9e-25
PRK05481	289	PRK05481, PRK05481, lipoyl synthase; Provisional	4e-23
PRK12928	290	PRK12928, PRK12928, lipoyl synthase; Provisional	3e-21
COG0320	306	COG0320, LipA, Lipoate synthase [Coenzyme metaboli	4e-21
PLN02428	349	PLN02428, PLN02428, lipoic acid synthase	4e-20
TIGR00510	302	TIGR00510, lipA, lipoate synthase	3e-18
PRK12928	290	PRK12928, PRK12928, lipoyl synthase; Provisional	2e-17
PTZ00413	398	PTZ00413, PTZ00413, lipoate synthase; Provisional	5e-17
TIGR00510	302	TIGR00510, lipA, lipoate synthase	5e-15
PLN02428	349	PLN02428, PLN02428, lipoic acid synthase	5e-11
PTZ00413	398	PTZ00413, PTZ00413, lipoate synthase; Provisional	2e-10
COG0320	306	COG0320, LipA, Lipoate synthase [Coenzyme metaboli	1e-07
PRK05481	289	PRK05481, PRK05481, lipoyl synthase; Provisional	2e-06
PRK12928	290	PRK12928, PRK12928, lipoyl synthase; Provisional	5e-05
TIGR00510	302	TIGR00510, lipA, lipoate synthase	1e-04
smart00729	216	smart00729, Elp3, Elongator protein 3, MiaB family	0.004

>gnl|CDD|215236 PLN02428, PLN02428, lipoic acid synthase

 Score =  111 bits (279), Expect = 5e-30
 Identities = 35/58 (60%), Positives = 45/58 (77%)

Query: 81  LRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIM 138
           L  P WL+ + P G ++ ++KE+LR L L+TVCEEA+CPNIGECW GG  GT+TATIM
Sbjct: 49  LPKPKWLRQRAPGGEKYTEIKEKLRELKLNTVCEEAQCPNIGECWNGGGTGTATATIM 106

Length = 349

>gnl|CDD|235493 PRK05481, PRK05481, lipoyl synthase; Provisional

 Score = 99.8 bits (250), Expect = 5e-26
 Identities = 33/61 (54%), Positives = 41/61 (67%), Gaps = 5/61 (8%)

Query: 78  NERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATI 137
            +  R P WL+ K+PTG ++ ++K+ LR L LHTVCEEA CPNIGECW  G     TAT 
Sbjct: 2   EKVARKPDWLRVKLPTGEEYTEIKKLLRELGLHTVCEEASCPNIGECWSRG-----TATF 56

Query: 138 M 138
           M
Sbjct: 57  M 57

Length = 289

>gnl|CDD|240408 PTZ00413, PTZ00413, lipoate synthase; Provisional

 Score = 98.7 bits (246), Expect = 4e-25
 Identities = 45/93 (48%), Positives = 56/93 (60%), Gaps = 11/93 (11%)

Query: 51  ETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTG----SQFAKVKEQLRT 106
           E FV  PE  +       G +KR +       LPPW K K+P G     +F +++  +R 
Sbjct: 67  EGFVDLPEGLKPSAASI-GPIKRGEE-----PLPPWFKVKVPKGASRRPRFNRIRRSMRE 120

Query: 107 LNLHTVCEEARCPNIGECWGGG-EHGTSTATIM 138
             LHTVCEEA+CPNIGECWGGG E GT+TATIM
Sbjct: 121 KKLHTVCEEAKCPNIGECWGGGDEEGTATATIM 153

Length = 398

>gnl|CDD|223397 COG0320, LipA, Lipoate synthase [Coenzyme metabolism]

 Score = 96.6 bits (241), Expect = 9e-25
 Identities = 37/62 (59%), Positives = 41/62 (66%), Gaps = 5/62 (8%)

Query: 77  ENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTAT 136
             E LR P WLK K PTGS++ ++KE LR   LHTVCEEA CPNIGECW  G     TAT
Sbjct: 18  NEELLRKPEWLKVKAPTGSRYQEIKEILRKNGLHTVCEEASCPNIGECWSRG-----TAT 72

Query: 137 IM 138
            M
Sbjct: 73  FM 74

Length = 306

>gnl|CDD|235493 PRK05481, PRK05481, lipoyl synthase; Provisional

 Score = 92.1 bits (230), Expect = 4e-23
 Identities = 28/44 (63%), Positives = 37/44 (84%)

Query: 4   SSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKV 47
           S +M+GLGETD EV + +DDL AAGVD +T+GQY+QP++KHL V
Sbjct: 200 SGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQPSRKHLPV 243

Length = 289

>gnl|CDD|237261 PRK12928, PRK12928, lipoyl synthase; Provisional

 Score = 87.3 bits (217), Expect = 3e-21
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 79  ERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIM 138
              RLP WL+  I   S+   V+  ++   LHT+CEEARCPN GEC+  G     TAT +
Sbjct: 10  PVERLPEWLRAPIGKASELETVQRLVKQRRLHTICEEARCPNRGECYAQG-----TATFL 64

Length = 290

>gnl|CDD|223397 COG0320, LipA, Lipoate synthase [Coenzyme metabolism]

 Score = 86.9 bits (216), Expect = 4e-21
 Identities = 27/44 (61%), Positives = 37/44 (84%)

Query: 4   SSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKV 47
           S +M+GLGETD EV + +DDL +AGVD +T+GQY+QP++KHL V
Sbjct: 217 SGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYLQPSRKHLPV 260

Length = 306

>gnl|CDD|215236 PLN02428, PLN02428, lipoic acid synthase

 Score = 84.8 bits (210), Expect = 4e-20
 Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 5/64 (7%)

Query: 4   SSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHY 63
           +SIMLGLGETD EV QT++DL AAGVD VT GQY++PTK+HL V    T    PE  + +
Sbjct: 251 TSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVT----PEKFEFW 306

Query: 64  LKEY 67
            +EY
Sbjct: 307 -REY 309

Length = 349

>gnl|CDD|233002 TIGR00510, lipA, lipoate synthase

 Score = 79.1 bits (195), Expect = 3e-18
 Identities = 30/60 (50%), Positives = 37/60 (61%), Gaps = 5/60 (8%)

Query: 79  ERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIM 138
             LR P WLK K+P G+  A++K  ++   LHTVCEEA CPN+ ECW  G     TAT M
Sbjct: 13  ILLRKPEWLKIKLPLGTVIAQIKNTMKNKGLHTVCEEASCPNLTECWNHG-----TATFM 67

This enzyme is an iron-sulfur protein. It is localized to mitochondria in yeast and Arabidopsis. It generates lipoic acid, a thiol antioxidant that is linked to a specific Lys as prosthetic group for the pyruvate and alpha-ketoglutarate dehydrogenase complexes and the glycine-cleavage system. The family shows strong sequence conservation [Biosynthesis of cofactors, prosthetic groups, and carriers, Lipoate]. Length = 302

>gnl|CDD|237261 PRK12928, PRK12928, lipoyl synthase; Provisional

 Score = 76.9 bits (190), Expect = 2e-17
 Identities = 25/44 (56%), Positives = 33/44 (75%)

Query: 4   SSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKV 47
           S +MLGLGET+ EV +TL DL A G D +T+GQY++P+  HL V
Sbjct: 208 SGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPV 251

Length = 290

>gnl|CDD|240408 PTZ00413, PTZ00413, lipoate synthase; Provisional

 Score = 76.4 bits (188), Expect = 5e-17
 Identities = 34/46 (73%), Positives = 38/46 (82%)

Query: 3   ESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVS 48
           +SSIMLGLGET+ EV+QTL DL  AGV  VTLGQY+QPTK  LKVS
Sbjct: 298 KSSIMLGLGETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKVS 343

Length = 398

>gnl|CDD|233002 TIGR00510, lipA, lipoate synthase

 Score = 70.3 bits (172), Expect = 5e-15
 Identities = 26/47 (55%), Positives = 36/47 (76%)

Query: 1   MRESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKV 47
             +S IM+GLGET+ E++QTL DL   GV  VTLGQY++P+++HL V
Sbjct: 208 PTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPV 254

This enzyme is an iron-sulfur protein. It is localized to mitochondria in yeast and Arabidopsis. It generates lipoic acid, a thiol antioxidant that is linked to a specific Lys as prosthetic group for the pyruvate and alpha-ketoglutarate dehydrogenase complexes and the glycine-cleavage system. The family shows strong sequence conservation [Biosynthesis of cofactors, prosthetic groups, and carriers, Lipoate]. Length = 302

>gnl|CDD|215236 PLN02428, PLN02428, lipoic acid synthase

 Score = 59.4 bits (144), Expect = 5e-11
 Identities = 21/27 (77%), Positives = 22/27 (81%)

Query: 139 SGLDVFAHNIETVEKLTPYVRDRRARY 165
           SGLDVFAHNIETVE+L   VRD RA Y
Sbjct: 204 SGLDVFAHNIETVERLQRIVRDPRAGY 230

Length = 349

>gnl|CDD|240408 PTZ00413, PTZ00413, lipoate synthase; Provisional

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 20/27 (74%), Positives = 23/27 (85%)

Query: 139 SGLDVFAHNIETVEKLTPYVRDRRARY 165
           S L V+AHNIE VE++TPYVRDRRA Y
Sbjct: 251 SPLSVYAHNIECVERITPYVRDRRASY 277

Length = 398

>gnl|CDD|223397 COG0320, LipA, Lipoate synthase [Coenzyme metabolism]

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 95  SQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNIETVEKL 154
             FA+    +R LN  T  E    P+       G          +G DVF HN+ETV +L
Sbjct: 133 QHFAECIRAIRELNPQTTIE-VLTPDFR-----GNDDALEIVADAGPDVFNHNVETVPRL 186

Query: 155 TPYVRDRRARY 165
            P VR   A Y
Sbjct: 187 YPRVR-PGATY 196

Length = 306

>gnl|CDD|235493 PRK05481, PRK05481, lipoyl synthase; Provisional

 Score = 45.8 bits (110), Expect = 2e-06
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 135 ATIM-SGLDVFAHNIETVEKLTPYVRDRRARY 165
            T++ +  DVF HN+ETV +L   VR   A Y
Sbjct: 149 LTVLDARPDVFNHNLETVPRLYKRVR-PGADY 179

Length = 289

>gnl|CDD|237261 PRK12928, PRK12928, lipoyl synthase; Provisional

 Score = 41.8 bits (99), Expect = 5e-05
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 18/77 (23%)

Query: 95  SQFAKVKEQLRTLNLHTVCEEARCPNIG------ECWGGGEHGTSTATIMSGLDVFAHNI 148
           + F      +R          AR P  G      + WGG     +T  + +  DVF HN+
Sbjct: 123 AHFVATIAAIR----------ARNPGTGIEVLTPDFWGGQRERLAT-VLAAKPDVFNHNL 171

Query: 149 ETVEKLTPYVRDRRARY 165
           ETV +L   VR R A Y
Sbjct: 172 ETVPRLQKAVR-RGADY 187

Length = 290

>gnl|CDD|233002 TIGR00510, lipA, lipoate synthase

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 13/23 (56%), Positives = 18/23 (78%)

Query: 139 SGLDVFAHNIETVEKLTPYVRDR 161
           +  DV+ HN+ETVE+LTP+VR  
Sbjct: 165 APPDVYNHNLETVERLTPFVRPG 187

This enzyme is an iron-sulfur protein. It is localized to mitochondria in yeast and Arabidopsis. It generates lipoic acid, a thiol antioxidant that is linked to a specific Lys as prosthetic group for the pyruvate and alpha-ketoglutarate dehydrogenase complexes and the glycine-cleavage system. The family shows strong sequence conservation [Biosynthesis of cofactors, prosthetic groups, and carriers, Lipoate]. Length = 302

>gnl|CDD|214792 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 4   SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM 38
           + +++GL GET+ + ++TL  L   G D V++    
Sbjct: 155 TDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLS 190

This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. Length = 216

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
KOG2672|consensus	360		100.0
COG0320	306	LipA Lipoate synthase [Coenzyme metabolism]	99.97
PTZ00413	398	lipoate synthase; Provisional	99.95
COG0320	306	LipA Lipoate synthase [Coenzyme metabolism]	99.94
PLN02428	349	lipoic acid synthase	99.94
PTZ00413	398	lipoate synthase; Provisional	99.93
TIGR00510	302	lipA lipoate synthase. The family shows strong seq	99.9
KOG2672|consensus	360		99.9
TIGR00510	302	lipA lipoate synthase. The family shows strong seq	99.89
PLN02428	349	lipoic acid synthase	99.89
PRK12928	290	lipoyl synthase; Provisional	99.86
PRK12928	290	lipoyl synthase; Provisional	99.72
PRK05481	289	lipoyl synthase; Provisional	99.39
PRK05481	289	lipoyl synthase; Provisional	99.28
TIGR03700	351	mena_SCO4494 putative menaquinone biosynthesis pro	96.97
PRK08508	279	biotin synthase; Provisional	96.64
PRK15108	345	biotin synthase; Provisional	96.05
TIGR03699	340	mena_SCO4550 menaquinone biosynthesis protein, SCO	96.02
PRK06256	336	biotin synthase; Validated	95.5
TIGR00423	309	radical SAM domain protein, CofH subfamily. This p	95.2
PRK07094	323	biotin synthase; Provisional	95.19
TIGR03550	322	F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav	95.13
PRK07360	371	FO synthase subunit 2; Reviewed	94.64
PRK06267	350	hypothetical protein; Provisional	94.46
COG0502	335	BioB Biotin synthase and related enzymes [Coenzyme	94.29
TIGR00433	296	bioB biotin synthetase. Catalyzes the last step of	94.26
PRK08444	353	hypothetical protein; Provisional	94.12
PRK05927	350	hypothetical protein; Provisional	93.8
TIGR03551	343	F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav	93.6
PRK05926	370	hypothetical protein; Provisional	93.21
PLN02389	379	biotin synthase	92.73
TIGR01212	302	radical SAM protein, TIGR01212 family. This unchar	92.48
PRK14332	449	(dimethylallyl)adenosine tRNA methylthiotransferas	92.38
TIGR01125	430	MiaB-like tRNA modifying enzyme YliG, TIGR01125. T	91.66
PRK08445	348	hypothetical protein; Provisional	91.59
TIGR01579	414	MiaB-like-C MiaB-like tRNA modifying enzyme. This	91.54
PRK06245	336	cofG FO synthase subunit 1; Reviewed	91.41
PRK09234	843	fbiC FO synthase; Reviewed	91.23
smart00729	216	Elp3 Elongator protein 3, MiaB family, Radical SAM	90.79
TIGR00089	429	RNA modification enzyme, MiaB family. This subfami	90.68
TIGR01578	420	MiaB-like-B MiaB-like tRNA modifying enzyme, archa	90.23
TIGR03471	472	HpnJ hopanoid biosynthesis associated radical SAM	88.04
PRK14331	437	(dimethylallyl)adenosine tRNA methylthiotransferas	88.02
PRK14338	459	(dimethylallyl)adenosine tRNA methylthiotransferas	88.01
PRK14325	444	(dimethylallyl)adenosine tRNA methylthiotransferas	87.99
TIGR01574	438	miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-3	87.71
PRK09234	843	fbiC FO synthase; Reviewed	87.28
PRK14862	440	rimO ribosomal protein S12 methylthiotransferase;	87.07
TIGR02026	497	BchE magnesium-protoporphyrin IX monomethyl ester	85.88
PRK14326	502	(dimethylallyl)adenosine tRNA methylthiotransferas	85.65
PRK08207	488	coproporphyrinogen III oxidase; Provisional	85.31
PRK14334	440	(dimethylallyl)adenosine tRNA methylthiotransferas	84.78
PRK14328	439	(dimethylallyl)adenosine tRNA methylthiotransferas	83.99
PRK09240	371	thiH thiamine biosynthesis protein ThiH; Reviewed	83.82
PRK08599	377	coproporphyrinogen III oxidase; Provisional	83.29
PRK05799	374	coproporphyrinogen III oxidase; Provisional	83.23
cd01335	204	Radical_SAM Radical SAM superfamily. Enzymes of th	82.32

>KOG2672|consensus

Probab=100.00  E-value=1.2e-39  Score=281.75  Aligned_cols=95  Identities=58%  Similarity=0.975  Sum_probs=86.2

Q ss_pred             cccccccCCCCccchhhhhccccccccCccccccCCccccccCCCCchHHHHHHHHhhcCccccccccCCCCccccccCC
Q psy6794          49 YRETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGG  128 (165)
Q Consensus        49 ~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~rKP~WLRvs~pag~~~~~V~~~l~~~~L~TVCeeA~CPNi~EC~~~g  128 (165)
                      +|+|||++....-..|+.|.++++++ |.. ++|+|+|||.++|.+++|.+++..|++++||||||||+||||||||++|
T Consensus        28 s~~DFv~~d~~~~~~~~~e~~~~~~~-~~~-~~rlP~WLK~~iP~G~n~~~iK~~lr~l~L~TVCEEArCPNiGECWgG~  105 (360)
T KOG2672|consen   28 SFADFVSGDKPLRADWDFEKGRKKRE-GEE-RLRLPPWLKTKIPLGENYNKIKKDLRELKLHTVCEEARCPNIGECWGGG  105 (360)
T ss_pred             chhhhhcCCcccccccchhhchhhhh-ccc-cccCChhhcccCCCCccHHHHHHHHhhCchhhhhhhccCCchhhccCCC
Confidence            68999998766556788888887777 543 8999999999999999999999999999999999999999999999999


Q ss_pred             CCcceeeeeeecccccc
Q psy6794         129 EHGTSTATIMSGLDVFA  145 (165)
Q Consensus       129 ~~~~aT~~im~~~~~c~  145 (165)
                      ++++||||||.+||+||
T Consensus       106 d~~~ATATIMlmGDTCT  122 (360)
T KOG2672|consen  106 DKSTATATIMLMGDTCT  122 (360)
T ss_pred             CCcceeEEEEeecCccc
Confidence            99999999999999854

>COG0320 LipA Lipoate synthase [Coenzyme metabolism]

Probab=99.97  E-value=6.3e-33  Score=238.78  Aligned_cols=91  Identities=38%  Similarity=0.644  Sum_probs=85.9

Q ss_pred             CCccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccCCCCccchhhhhccccccccCcccc
Q psy6794           1 MRESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENER   80 (165)
Q Consensus         1 ~~ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~   80 (165)
                      +||||||||||||++||.|+|+|||++||||||||||||||++|+||.   +||+     |++|+.|+ ..++++||. +
T Consensus       214 ~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYlqPS~~HlpV~---ryv~-----PeeF~~~~-~~a~~~GF~-~  283 (306)
T COG0320         214 PTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYLQPSRKHLPVQ---RYVT-----PEEFDELE-EVAEEMGFL-H  283 (306)
T ss_pred             ccccceeeecCCcHHHHHHHHHHHHHcCCCEEEeccccCCccccCCce---eccC-----HHHHHHHH-HHHHHccch-h
Confidence            589999999999999999999999999999999999999999999997   9999     78999997 788999998 8


Q ss_pred             ccCCccccccCCCCchHHHHH
Q psy6794          81 LRLPPWLKTKIPTGSQFAKVK  101 (165)
Q Consensus        81 ~rKP~WLRvs~pag~~~~~V~  101 (165)
                      +...|.+|+|+++++.|.+..
T Consensus       284 v~sgPlvRSSYhA~~~~~~~~  304 (306)
T COG0320         284 VASGPLVRSSYHADEQFAEAE  304 (306)
T ss_pred             hccCcccccccchHHHHHHhh
Confidence            999999999999999887654

>PTZ00413 lipoate synthase; Provisional

Probab=99.95  E-value=1.6e-28  Score=219.14  Aligned_cols=95  Identities=48%  Similarity=0.876  Sum_probs=75.2

Q ss_pred             cccccccCCCCccchhhhhccccccccCccccccCCccccccCCCCc----hHHHHHHHHhhcCccccccccCCCCcccc
Q psy6794          49 YRETFVFQPEPKQHYLKEYDGKLKREKGENERLRLPPWLKTKIPTGS----QFAKVKEQLRTLNLHTVCEEARCPNIGEC  124 (165)
Q Consensus        49 ~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~rKP~WLRvs~pag~----~~~~V~~~l~~~~L~TVCeeA~CPNi~EC  124 (165)
                      ++.+|+..+......+.... .+++  |   ..+||+|||+++|.++    .|.+++++|++++||||||||+||||+||
T Consensus        65 ~~~~f~~l~~~~~~~~~~~~-~~~~--~---~~~kP~Wlk~~~~~~~~~~~~~~~~~~~~~~~~L~TVCeea~CPNi~EC  138 (398)
T PTZ00413         65 SLEGFVDLPEGLKPSAASIG-PIKR--G---EEPLPPWFKVKVPKGASRRPRFNRIRRSMREKKLHTVCEEAKCPNIGEC  138 (398)
T ss_pred             chhhhhcCccccccccccCC-CccC--C---CCCCCcceeecCCCCccccchHHHHHHHHHhCCCceeeCCCCCCChHHH
Confidence            34678765433222222222 2222  2   4689999999999988    89999999999999999999999999999


Q ss_pred             ccCC-CCcceeeeeeeccccccccch
Q psy6794         125 WGGG-EHGTSTATIMSGLDVFAHNIE  149 (165)
Q Consensus       125 ~~~g-~~~~aT~~im~~~~~c~~~~~  149 (165)
                      |++| ..|+|||||||+||+|||||.
T Consensus       139 ~~~~~~~~~~tATfmilG~~CTr~C~  164 (398)
T PTZ00413        139 WGGGDEEGTATATIMVMGDHCTRGCR  164 (398)
T ss_pred             hCCCCCCCCceeEeeecCCCCCCCCC
Confidence            9998 468888888999999999985

>COG0320 LipA Lipoate synthase [Coenzyme metabolism]

Probab=99.94  E-value=3.7e-28  Score=209.32  Aligned_cols=66  Identities=55%  Similarity=0.997  Sum_probs=62.0

Q ss_pred             cccCCccccccCCCCchHHHHHHHHhhcCccccccccCCCCccccccCCCCcceeeeeeeccccccccchh
Q psy6794          80 RLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNIET  150 (165)
Q Consensus        80 ~~rKP~WLRvs~pag~~~~~V~~~l~~~~L~TVCeeA~CPNi~EC~~~g~~~~aT~~im~~~~~c~~~~~~  150 (165)
                      ..+||+|+|+++|.++.|.+++++||+++||||||||+||||+|||++|   ||||||||  |+|||+|.-
T Consensus        21 ~~rkP~Wlr~k~p~~~~~~~~k~~~r~~~L~TVCEEA~CPNi~ECw~~~---tATFmImG--~~CTR~C~F   86 (306)
T COG0320          21 LLRKPEWLKVKAPTGSRYQEIKEILRKNGLHTVCEEASCPNIGECWSRG---TATFMILG--DICTRRCRF   86 (306)
T ss_pred             hccCcHhheecCCCCchHHHHHHHHHhcCCceecccCCCCChHHHhcCC---ceEEeecc--chhccCCCc
Confidence            5789999999999999999999999999999999999999999999965   88888888  999999963

>PLN02428 lipoic acid synthase

Probab=99.94  E-value=3.6e-27  Score=208.09  Aligned_cols=70  Identities=51%  Similarity=0.978  Sum_probs=67.1

Q ss_pred             cccCCccccccCCCCchHHHHHHHHhhcCccccccccCCCCccccccCCCCcceeeeeeeccccccccch
Q psy6794          80 RLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNIE  149 (165)
Q Consensus        80 ~~rKP~WLRvs~pag~~~~~V~~~l~~~~L~TVCeeA~CPNi~EC~~~g~~~~aT~~im~~~~~c~~~~~  149 (165)
                      ..+||+|||+++|.+++|.+++++|++++||||||||+||||+|||++|.+++||||+|++|+.|++||.
T Consensus        48 ~~~~p~wl~~~~~~~~~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~~~~~~taT~milg~gCtr~Cr  117 (349)
T PLN02428         48 PLPKPKWLRQRAPGGEKYTEIKEKLRELKLNTVCEEAQCPNIGECWNGGGTGTATATIMILGDTCTRGCR  117 (349)
T ss_pred             CCCCCcceeecCCCCchHHHHHHHHHHCCCceeecCCCCCChHHhhCCCCCCCceEEEEEecCCCCCCCC
Confidence            5689999999999999999999999999999999999999999999999889999999999999999996

>PTZ00413 lipoate synthase; Provisional

Probab=99.93  E-value=1.1e-26  Score=207.54  Aligned_cols=87  Identities=43%  Similarity=0.618  Sum_probs=82.8

Q ss_pred             CccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccCCCCccchhhhhccccccccCccccc
Q psy6794           2 RESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENERL   81 (165)
Q Consensus         2 ~ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~   81 (165)
                      +|||||||||||++|++++|+||+++|||++|||||||||++|+||.   +||+     |++|+.|+ +++.+.||. ++
T Consensus       297 tcSGiIVGLGET~eEvie~m~dLrelGVDivtIGQYL~Ps~~h~~V~---~yv~-----P~~F~~~~-~~a~~~Gf~-~v  366 (398)
T PTZ00413        297 TKSSIMLGLGETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKVS---RYAH-----PKEFEMWE-EEAMKMGFL-YC  366 (398)
T ss_pred             EeeeeEecCCCCHHHHHHHHHHHHHcCCcEEeeccccCCCcccCCce---eccC-----HHHHHHHH-HHHHHcCCc-eE
Confidence            79999999999999999999999999999999999999999999997   9999     88999998 789999998 99


Q ss_pred             cCCccccccCCCCchHH
Q psy6794          82 RLPPWLKTKIPTGSQFA   98 (165)
Q Consensus        82 rKP~WLRvs~pag~~~~   98 (165)
                      ...|.+|++|++++.|.
T Consensus       367 ~sgPlVRSSY~A~e~~~  383 (398)
T PTZ00413        367 ASGPLVRSSYRAGEYYI  383 (398)
T ss_pred             EecCccccchhccHHHH
Confidence            99999999999998554

>TIGR00510 lipA lipoate synthase

Probab=99.90  E-value=1.5e-24  Score=187.91  Aligned_cols=87  Identities=39%  Similarity=0.628  Sum_probs=82.3

Q ss_pred             CccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccCCCCccchhhhhccccccccCccccc
Q psy6794           2 RESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENERL   81 (165)
Q Consensus         2 ~ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~   81 (165)
                      +|||||||||||+||+.++|++|+++|+|++|||||||||++|+||.   +||+     |++|+.|+ .++.+.||. ++
T Consensus       209 ~~TgiIVGlGETeee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~---~~~~-----p~~f~~~~-~~a~~~gf~-~v  278 (302)
T TIGR00510       209 TKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVK---RYVS-----PEEFDYYR-SVALEMGFL-HA  278 (302)
T ss_pred             ecceEEEECCCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCCCccc---cCCC-----HHHHHHHH-HHHHHcCCh-he
Confidence            68999999999999999999999999999999999999999999997   9999     78999997 789999998 99


Q ss_pred             cCCccccccCCCCchHH
Q psy6794          82 RLPPWLKTKIPTGSQFA   98 (165)
Q Consensus        82 rKP~WLRvs~pag~~~~   98 (165)
                      ...|.+|+||++++.|.
T Consensus       279 ~~~p~vrssy~a~~~~~  295 (302)
T TIGR00510       279 ACGPFVRSSYHADSLFA  295 (302)
T ss_pred             EecccchhhhhHHHHHH
Confidence            99999999999987654

The family shows strong sequence conservation.

>KOG2672|consensus

Probab=99.90  E-value=1.2e-24  Score=188.71  Aligned_cols=96  Identities=49%  Similarity=0.724  Sum_probs=82.7

Q ss_pred             CCccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccCCCCccchhhhhccccccccCcccc
Q psy6794           1 MRESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENER   80 (165)
Q Consensus         1 ~~ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~   80 (165)
                      ||||+||||||||+|||.++|+|||+++||++|+||||||+++|++|.   +||++  ++|+.|+.|+    .+.||. +
T Consensus       257 itktsiMlglgetdeei~~tl~dLr~~~vdv~t~gqym~ptkrhl~v~---eyvtp--ekf~~w~~~~----~~lgf~-y  326 (360)
T KOG2672|consen  257 ITKTSIMLGLGETDEEIKQTLKDLRAADVDVVTFGQYMQPTKRHLKVK---EYVTP--EKFDYWKEYG----EELGFL-Y  326 (360)
T ss_pred             eehhhhhhccCCCHHHHHHHHHHHHHcCCcEEecccccCCccccceeE---EeeCH--HHHHHHHHHh----hhcceE-E
Confidence            699999999999999999999999999999999999999999999997   99994  3466666665    478887 8


Q ss_pred             ccCCccccccCCCCchHHHHHHHHhhcC
Q psy6794          81 LRLPPWLKTKIPTGSQFAKVKEQLRTLN  108 (165)
Q Consensus        81 ~rKP~WLRvs~pag~~~~~V~~~l~~~~  108 (165)
                      +..+|.+|+++.+++-|  |+++|+..+
T Consensus       327 ~AsgplvrSsykage~~--i~~~l~~r~  352 (360)
T KOG2672|consen  327 VASGPLVRSSYKAGEYF--IKNVLEKRK  352 (360)
T ss_pred             eccCceeechhhhhHHH--HHHHHHhcc
Confidence            99999999999988654  556665543

>TIGR00510 lipA lipoate synthase

Probab=99.89  E-value=5.1e-24  Score=184.49  Aligned_cols=65  Identities=46%  Similarity=0.929  Sum_probs=60.5

Q ss_pred             cccCCccccccCCCCchHHHHHHHHhhcCccccccccCCCCccccccCCCCcceeeeeeeccccccccch
Q psy6794          80 RLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNIE  149 (165)
Q Consensus        80 ~~rKP~WLRvs~pag~~~~~V~~~l~~~~L~TVCeeA~CPNi~EC~~~g~~~~aT~~im~~~~~c~~~~~  149 (165)
                      ..+||+|||+++|.++.|.+++++|++++||||||||+||||+|||+++   |||||+++  |.|++||.
T Consensus        14 ~~~~p~w~~~~~~~~~~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~---tatfm~i~--~gC~~~C~   78 (302)
T TIGR00510        14 LLRKPEWLKIKLPLGTVIAQIKNTMKNKGLHTVCEEASCPNLTECWNHG---TATFMILG--DICTRRCP   78 (302)
T ss_pred             cCCCCcceEecCCCCchHHHHHHHHHHCCCceeecCCCCCCcccccCCC---EEEEEecC--cCcCCCCC
Confidence            5689999999999999999999999999999999999999999999975   78887776  89999997

The family shows strong sequence conservation.

>PLN02428 lipoic acid synthase

Probab=99.89  E-value=8.2e-24  Score=186.82  Aligned_cols=86  Identities=44%  Similarity=0.689  Sum_probs=81.7

Q ss_pred             CccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccCCCCccchhhhhccccccccCccccc
Q psy6794           2 RESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENERL   81 (165)
Q Consensus         2 ~ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~   81 (165)
                      +|||||||||||+||+.++|++|+++|||++|||||||||+.|+||.   +||+     |++|+.|+ .++.+.||. ++
T Consensus       249 tkSg~MvGLGET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~---~~v~-----p~~f~~~~-~~~~~~gf~-~v  318 (349)
T PLN02428        249 TKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVK---EYVT-----PEKFEFWR-EYGEEMGFR-YV  318 (349)
T ss_pred             EEEeEEEecCCCHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeee---cccC-----HHHHHHHH-HHHHHcCCc-eE
Confidence            69999999999999999999999999999999999999999999998   9999     78999997 889999998 99


Q ss_pred             cCCccccccCCCCchH
Q psy6794          82 RLPPWLKTKIPTGSQF   97 (165)
Q Consensus        82 rKP~WLRvs~pag~~~   97 (165)
                      ...|.+|++|++++.|
T Consensus       319 ~sgp~vrssy~a~~~~  334 (349)
T PLN02428        319 ASGPLVRSSYKAGEFF  334 (349)
T ss_pred             EecCcccchhhhHHHH
Confidence            9999999999998754

>PRK12928 lipoyl synthase; Provisional

Probab=99.86  E-value=2.4e-22  Score=172.81  Aligned_cols=84  Identities=37%  Similarity=0.620  Sum_probs=80.2

Q ss_pred             CccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccCCCCccchhhhhccccccccCccccc
Q psy6794           2 RESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENERL   81 (165)
Q Consensus         2 ~ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~   81 (165)
                      ++|+||+|+|||++|+.++|++|++.|+|+++||||||||++|+||.   +||+     |++|+.|. .++.+.||. ++
T Consensus       206 ~~s~iIvG~GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~---~~~~-----~~~f~~~~-~~~~~~g~~-~~  275 (290)
T PRK12928        206 TKSGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQ---RYWT-----PEEFEALG-QIARELGFS-HV  275 (290)
T ss_pred             ecccEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCcee---eccC-----HHHHHHHH-HHHHHcCCc-ee
Confidence            68999999999999999999999999999999999999999999997   9999     78999997 889999997 99


Q ss_pred             cCCccccccCCCCc
Q psy6794          82 RLPPWLKTKIPTGS   95 (165)
Q Consensus        82 rKP~WLRvs~pag~   95 (165)
                      ...|.+|+||++++
T Consensus       276 ~~~p~~rssy~a~~  289 (290)
T PRK12928        276 RSGPLVRSSYHAGE  289 (290)
T ss_pred             EecCcccccccCCC
Confidence            99999999999875

>PRK12928 lipoyl synthase; Provisional

Probab=99.72  E-value=2.6e-18  Score=147.90  Aligned_cols=65  Identities=42%  Similarity=0.797  Sum_probs=60.1

Q ss_pred             cccCCccccccCCCCchHHHHHHHHhhcCccccccccCCCCccccccCCCCcceeeeeeeccccccccch
Q psy6794          80 RLRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNIE  149 (165)
Q Consensus        80 ~~rKP~WLRvs~pag~~~~~V~~~l~~~~L~TVCeeA~CPNi~EC~~~g~~~~aT~~im~~~~~c~~~~~  149 (165)
                      ..+||+|||+++|.+++|.++..++++++|||||++|+|||+++||+++   +||||+++  +.|+++|-
T Consensus        11 ~~~~p~w~~~~~~~~~~~~~~~~l~~~~~l~tv~~~A~~~~~~~~~~~~---~~tfv~is--~gC~~~C~   75 (290)
T PRK12928         11 VERLPEWLRAPIGKASELETVQRLVKQRRLHTICEEARCPNRGECYAQG---TATFLIMG--SICTRRCA   75 (290)
T ss_pred             CCCCCcceeecCCCChhHHHHHHHHHcCCHHHHHHHhCCCcccccCCCC---EEEEEEec--ccccCcCC
Confidence            4689999999999999999999999999999999999999999999865   78888885  99999985

>PRK05481 lipoyl synthase; Provisional

Probab=99.39  E-value=2.8e-13  Score=116.29  Aligned_cols=89  Identities=40%  Similarity=0.638  Sum_probs=79.6

Q ss_pred             CccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCCCCCCccccccccccCCCCccchhhhhccccccccCccccc
Q psy6794           2 RESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPTKKHLKVSYRETFVFQPEPKQHYLKEYDGKLKREKGENERL   81 (165)
Q Consensus         2 ~ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps~~h~~v~~~~~fV~~~~~~pe~fe~Y~gKLk~ekGf~~~~   81 (165)
                      ..|++|+|+|||+|++.++|+.|++.++|.+.++||++|+.+|++|.   ++|.     ++.++.+. .+..+.||. .+
T Consensus       198 ~~t~~IvGfGET~ed~~~tl~~lrel~~d~v~if~Ys~pa~k~~~v~---~~~k-----~~r~~~l~-~~~~~i~~~-~~  267 (289)
T PRK05481        198 TKSGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQPSRKHLPVE---RYVT-----PEEFDEYK-EIALELGFL-HV  267 (289)
T ss_pred             EeeeeEEECCCCHHHHHHHHHHHHhcCCCEEEEEccCCCccccCCCC---CcCC-----HHHHHHHH-HHHHHcCch-he
Confidence            35899999999999999999999999999999999999999889997   7776     67778886 788899997 89


Q ss_pred             cCCccccccCCCCchHHHH
Q psy6794          82 RLPPWLKTKIPTGSQFAKV  100 (165)
Q Consensus        82 rKP~WLRvs~pag~~~~~V  100 (165)
                      ...|.+|+|+.++..+..+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~  286 (289)
T PRK05481        268 ASGPLVRSSYHADEQAAGA  286 (289)
T ss_pred             EecCccccchhhHHHHhhh
Confidence            9999999999998866554

>PRK05481 lipoyl synthase; Provisional

Probab=99.28  E-value=2.3e-12  Score=110.60  Aligned_cols=64  Identities=52%  Similarity=1.054  Sum_probs=58.5

Q ss_pred             ccCCccccccCCCCchHHHHHHHHhhcCccccccccCCCCccccccCCCCcceeeeeeeccccccccch
Q psy6794          81 LRLPPWLKTKIPTGSQFAKVKEQLRTLNLHTVCEEARCPNIGECWGGGEHGTSTATIMSGLDVFAHNIE  149 (165)
Q Consensus        81 ~rKP~WLRvs~pag~~~~~V~~~l~~~~L~TVCeeA~CPNi~EC~~~g~~~~aT~~im~~~~~c~~~~~  149 (165)
                      .++|+|+|+++|.++.|++...++++.+|||+|++|.|||+.+||.+   +++||++..  +.|.++|-
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~a~~~~~~~~~~~---~~~~fi~is--~GC~~~C~   68 (289)
T PRK05481          5 ARKPDWLRVKLPTGEEYTEIKKLLRELGLHTVCEEASCPNIGECWSR---GTATFMILG--DICTRRCP   68 (289)
T ss_pred             CCCCcceeecCCCChhHHHHHHHHHhCChHHHHHhhCCCcchhccCC---CeEEEEEec--ccccCCCC
Confidence            46999999999999999999999999999999999999999999985   478888866  88888885

>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family

Probab=96.97  E-value=0.00083  Score=59.01  Aligned_cols=44  Identities=18%  Similarity=0.191  Sum_probs=36.9

Q ss_pred             CccceeeecCCCHHHHHHHHHHHHHcCCCe----eeeeeccCCCCCCC
Q psy6794           2 RESSIMLGLGETDAEVQQTLDDLLAAGVDC----VTLGQYMQPTKKHL   45 (165)
Q Consensus         2 ~ks~~m~glge~~~ev~~~~~dl~~~~~d~----~tigqyl~ps~~h~   45 (165)
                      +.||+|+|+|||++|..+.|..|++.+++.    ..|-|..+|...++
T Consensus       204 ~~sg~i~GlgEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl  251 (351)
T TIGR03700       204 TNATMLYGHIETPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRL  251 (351)
T ss_pred             cceEEEeeCCCCHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCcc
Confidence            468999999999999999999999999986    55677777655544

Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.

>PRK08508 biotin synthase; Provisional

Probab=96.64  E-value=0.0026  Score=54.37  Aligned_cols=38  Identities=21%  Similarity=0.231  Sum_probs=32.5

Q ss_pred             CccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCC
Q psy6794           2 RESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQP   40 (165)
Q Consensus         2 ~ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~p   40 (165)
                      ..||+|+|+|||++|+.+.|..|++.++|.+.+.- +.|
T Consensus       153 v~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~~-~~p  190 (279)
T PRK08508        153 LCSGGIFGLGESWEDRISFLKSLASLSPHSTPINF-FIP  190 (279)
T ss_pred             ecceeEEecCCCHHHHHHHHHHHHcCCCCEEeeCC-cCC
Confidence            35899999999999999999999999999766554 444

>PRK15108 biotin synthase; Provisional

Probab=96.05  E-value=0.0085  Score=52.92  Aligned_cols=38  Identities=24%  Similarity=0.216  Sum_probs=32.1

Q ss_pred             CccceeeecCCCHHHHHHHHHHHHHc--CCCeeeeeeccCC
Q psy6794           2 RESSIMLGLGETDAEVQQTLDDLLAA--GVDCVTLGQYMQP   40 (165)
Q Consensus         2 ~ks~~m~glge~~~ev~~~~~dl~~~--~~d~~tigqyl~p   40 (165)
                      +-||+|+|||||++|+.+.+..|++.  .++.+.+. ++.|
T Consensus       187 v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~-~~~P  226 (345)
T PRK15108        187 VCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPIN-MLVK  226 (345)
T ss_pred             eeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeC-CccC
Confidence            35899999999999999999999999  66777776 4445

>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family

Probab=96.02  E-value=0.0093  Score=51.73  Aligned_cols=40  Identities=18%  Similarity=0.175  Sum_probs=33.5

Q ss_pred             ccceeeecCCCHHHHHHHHHHHHHcCCCeee----eeeccCCCC
Q psy6794           3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVT----LGQYMQPTK   42 (165)
Q Consensus         3 ks~~m~glge~~~ev~~~~~dl~~~~~d~~t----igqyl~ps~   42 (165)
                      .+++|+|+|||++++.+.+..|++.+++...    |-++.+|..
T Consensus       198 ~~~~iiGlgEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~  241 (340)
T TIGR03699       198 TATMMFGHVETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGN  241 (340)
T ss_pred             cceeEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCC
Confidence            5899999999999999999999999998633    556666743

members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.

>PRK06256 biotin synthase; Validated

Probab=95.50  E-value=0.019  Score=49.52  Aligned_cols=37  Identities=19%  Similarity=0.328  Sum_probs=32.4

Q ss_pred             ccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCC
Q psy6794           3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQP   40 (165)
Q Consensus         3 ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~p   40 (165)
                      .+++|+|+|||++++.+.+..|++.+++.+.+. .+.|
T Consensus       204 ~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i~-~l~P  240 (336)
T PRK06256        204 CSGGIIGMGESLEDRVEHAFFLKELDADSIPIN-FLNP  240 (336)
T ss_pred             ccCeEEeCCCCHHHHHHHHHHHHhCCCCEEeec-cccc
Confidence            578999999999999999999999999988775 3444

>TIGR00423 radical SAM domain protein, CofH subfamily

Probab=95.20  E-value=0.016  Score=49.82  Aligned_cols=34  Identities=12%  Similarity=0.089  Sum_probs=29.5

Q ss_pred             ccceeeecCCCHHHHHHHHHHHHHcCCCeeeeee
Q psy6794           3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQ   36 (165)
Q Consensus         3 ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigq   36 (165)
                      -||+|+|+|||+++..+.|..|++.+.+...+.-
T Consensus       162 ~s~~iiG~~Et~ed~~~~l~~lr~l~~~~~~f~~  195 (309)
T TIGR00423       162 TATMMFGHVENPEHRVEHLLRIRKIQEKTGGFTE  195 (309)
T ss_pred             eeeEEecCCCCHHHHHHHHHHHHhhchhhCCeee
Confidence            4899999999999999999999999987655443

This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.

>PRK07094 biotin synthase; Provisional

Probab=95.19  E-value=0.027  Score=48.29  Aligned_cols=36  Identities=25%  Similarity=0.473  Sum_probs=32.9

Q ss_pred             ccceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794           3 ESSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM   38 (165)
Q Consensus         3 ks~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl   38 (165)
                      .+++|+|+ |||.+++.++++-+++.+++.+.+..|.
T Consensus       182 ~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~  218 (323)
T PRK07094        182 GSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFI  218 (323)
T ss_pred             cceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccc
Confidence            57899999 9999999999999999999998887754

>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit

Probab=95.13  E-value=0.024  Score=49.31  Aligned_cols=27  Identities=26%  Similarity=0.400  Sum_probs=24.5

Q ss_pred             CccceeeecCCCHHHHHHHHHHHHHcC
Q psy6794           2 RESSIMLGLGETDAEVQQTLDDLLAAG   28 (165)
Q Consensus         2 ~ks~~m~glge~~~ev~~~~~dl~~~~   28 (165)
                      +.|++|+|+|||++++.+.|..|++.+
T Consensus       165 ~~s~~i~G~gEt~ed~~~~l~~lr~Lq  191 (322)
T TIGR03550       165 FTTGILIGIGETREERAESLLAIRELH  191 (322)
T ss_pred             ccceeeEeCCCCHHHHHHHHHHHHHHH
Confidence            468999999999999999999998866

This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.

>PRK07360 FO synthase subunit 2; Reviewed

Probab=94.64  E-value=0.029  Score=49.81  Aligned_cols=36  Identities=19%  Similarity=0.159  Sum_probs=31.9

Q ss_pred             ccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794           3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYM   38 (165)
Q Consensus         3 ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl   38 (165)
                      -||+|+|+|||+++..+.|..|++.+++...++-++
T Consensus       218 ~sg~i~G~gEt~edrv~~l~~lr~l~~~~~g~~~fI  253 (371)
T PRK07360        218 TSTMMYGHVETPEHRIDHLLILREIQQETGGITEFV  253 (371)
T ss_pred             eeeEEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEE
Confidence            489999999999999999999999999986666544

>PRK06267 hypothetical protein; Provisional

Probab=94.46  E-value=0.056  Score=47.71  Aligned_cols=37  Identities=30%  Similarity=0.576  Sum_probs=32.3

Q ss_pred             cceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCC
Q psy6794           4 SSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPT   41 (165)
Q Consensus         4 s~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps   41 (165)
                      +|+|+|+||+.+|+.++++-|++.++|.+.+.- |.|.
T Consensus       171 ~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~-L~P~  207 (350)
T PRK06267        171 ITIILGLGETEDDIEKLLNLIEELDLDRITFYS-LNPQ  207 (350)
T ss_pred             eeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEe-eeEC
Confidence            789999999999999999999999999887765 3443

>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]

Probab=94.29  E-value=0.056  Score=48.45  Aligned_cols=35  Identities=29%  Similarity=0.297  Sum_probs=32.4

Q ss_pred             cceeeecCCCHHHHHHHHHHHHHcC-CCeeeeeecc
Q psy6794           4 SSIMLGLGETDAEVQQTLDDLLAAG-VDCVTLGQYM   38 (165)
Q Consensus         4 s~~m~glge~~~ev~~~~~dl~~~~-~d~~tigqyl   38 (165)
                      ||.+||||||.++-++.+..|++.. .|.|.|....
T Consensus       197 sGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~  232 (335)
T COG0502         197 SGGIVGLGETVEDRAELLLELANLPTPDSVPINFLN  232 (335)
T ss_pred             cceEecCCCCHHHHHHHHHHHHhCCCCCeeeeeeec
Confidence            8999999999999999999999999 9999988654

>TIGR00433 bioB biotin synthetase

Probab=94.26  E-value=0.065  Score=45.03  Aligned_cols=37  Identities=22%  Similarity=0.147  Sum_probs=31.8

Q ss_pred             cceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccCCC
Q psy6794           4 SSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQPT   41 (165)
Q Consensus         4 s~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~ps   41 (165)
                      +++|+|+|||.+++.++++.|++.|++.+.+.-+ .|.
T Consensus       176 ~~~i~Gl~et~~d~~~~~~~l~~l~~~~i~l~~l-~p~  212 (296)
T TIGR00433       176 SGGIFGLGETVEDRIGLALALANLPPESVPINFL-VKI  212 (296)
T ss_pred             EeEEEeCCCCHHHHHHHHHHHHhCCCCEEEeeee-EEc
Confidence            6789999999999999999999999998776654 443

Catalyzes the last step of the biotin biosynthesis pathway.

>PRK08444 hypothetical protein; Provisional

Probab=94.12  E-value=0.05  Score=48.52  Aligned_cols=33  Identities=9%  Similarity=0.051  Sum_probs=29.5

Q ss_pred             ccceeeecCCCHHHHHHHHHHHHHcCCCeeeee
Q psy6794           3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLG   35 (165)
Q Consensus         3 ks~~m~glge~~~ev~~~~~dl~~~~~d~~tig   35 (165)
                      =||+|+|+|||.+|..+.|..||+.+++..-|.
T Consensus       206 ~sg~l~G~gEt~edrv~hl~~Lr~Lq~~t~gf~  238 (353)
T PRK08444        206 NATMLFGHIENREHRIDHMLRLRDLQDKTGGFN  238 (353)
T ss_pred             cceeEEecCCCHHHHHHHHHHHHHhccccCCce
Confidence            389999999999999999999999999875544

>PRK05927 hypothetical protein; Provisional

Probab=93.80  E-value=0.049  Score=48.44  Aligned_cols=33  Identities=18%  Similarity=0.207  Sum_probs=28.1

Q ss_pred             ccceeeecCCCHHHHHHHHHHHHHcCCCeeeee
Q psy6794           3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLG   35 (165)
Q Consensus         3 ks~~m~glge~~~ev~~~~~dl~~~~~d~~tig   35 (165)
                      =||+|+|+|||+++..+.|..||+.+-++.-|+
T Consensus       202 ~sg~l~G~gEt~e~ri~~l~~Lr~lqd~~~gf~  234 (350)
T PRK05927        202 TATMMFGHVESPEDILLHLQTLRDAQDENPGFY  234 (350)
T ss_pred             CceeEEeeCCCHHHHHHHHHHHHHhhHhhCCee
Confidence            489999999999999999999999995554333

>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit

Probab=93.60  E-value=0.056  Score=47.26  Aligned_cols=35  Identities=20%  Similarity=0.138  Sum_probs=30.1

Q ss_pred             ccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794           3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQY   37 (165)
Q Consensus         3 ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqy   37 (165)
                      -||+|+|+|||.+++.+.+.-|++.+++...++-+
T Consensus       196 ~s~~i~G~~Et~ed~~~~l~~lr~l~~~~~~~~~~  230 (343)
T TIGR03551       196 TATIMYGHVETPEHWVDHLLILREIQEETGGFTEF  230 (343)
T ss_pred             cceEEEecCCCHHHHHHHHHHHHHhhHHhCCeeEE
Confidence            37899999999999999999999999986555443

This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.

>PRK05926 hypothetical protein; Provisional

Probab=93.21  E-value=0.098  Score=46.93  Aligned_cols=35  Identities=11%  Similarity=0.182  Sum_probs=32.3

Q ss_pred             cceeeecCCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794           4 SSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYM   38 (165)
Q Consensus         4 s~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl   38 (165)
                      ||+|.|+|||.+|..+-|..||+.++|..-|+-|.
T Consensus       225 sgmi~G~gEt~edrv~~l~~Lr~Lq~~t~gf~~fI  259 (370)
T PRK05926        225 ATMLCYHRETPEDIVTHMSKLRALQDKTSGFKNFI  259 (370)
T ss_pred             CceEEeCCCCHHHHHHHHHHHHhcCCccCCeeeeE
Confidence            78999999999999999999999999988777665

>PLN02389 biotin synthase

Probab=92.73  E-value=0.13  Score=46.36  Aligned_cols=32  Identities=25%  Similarity=0.390  Sum_probs=27.7

Q ss_pred             cceeeecCCCHHHHHHHHHHHHHc--CCCeeeee
Q psy6794           4 SSIMLGLGETDAEVQQTLDDLLAA--GVDCVTLG   35 (165)
Q Consensus         4 s~~m~glge~~~ev~~~~~dl~~~--~~d~~tig   35 (165)
                      ||+|+|||||++++.+.+..|++.  ++|.+.|.
T Consensus       231 sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~  264 (379)
T PLN02389        231 SGGIIGLGEAEEDRVGLLHTLATLPEHPESVPIN  264 (379)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHhcccCCcEEecc
Confidence            699999999999999999999988  56766663

>TIGR01212 radical SAM protein, TIGR01212 family

Probab=92.48  E-value=0.19  Score=43.51  Aligned_cols=34  Identities=29%  Similarity=0.432  Sum_probs=31.1

Q ss_pred             cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794           4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQY   37 (165)
Q Consensus         4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqy   37 (165)
                      +.+|+|| |||.+++.++++.+.+.++|.+.+.++
T Consensus       181 ~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l  215 (302)
T TIGR01212       181 SHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPL  215 (302)
T ss_pred             EeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEE
Confidence            5789999 999999999999999999999988653

This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.

>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=92.38  E-value=0.19  Score=45.99  Aligned_cols=35  Identities=26%  Similarity=0.417  Sum_probs=32.3

Q ss_pred             cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794           4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM   38 (165)
Q Consensus         4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl   38 (165)
                      +.+|+|+ |||++++.++++-+.+.+.|.+.+-+|-
T Consensus       306 td~IvGfPgET~edf~~tl~~v~~l~~~~~~~f~ys  341 (449)
T PRK14332        306 TDIIVGFPNETEEEFEDTLAVVREVQFDMAFMFKYS  341 (449)
T ss_pred             EEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEEEec
Confidence            5799998 9999999999999999999999888874

>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125

Probab=91.66  E-value=0.25  Score=44.45  Aligned_cols=35  Identities=26%  Similarity=0.422  Sum_probs=32.4

Q ss_pred             cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794           4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM   38 (165)
Q Consensus         4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl   38 (165)
                      +.+|+|+ |||++++.++++-+.+.+.+.+.+-.|.
T Consensus       290 ~~~I~G~PgET~e~~~~t~~fl~~~~~~~~~~~~~s  325 (430)
T TIGR01125       290 TTFIVGFPGETEEDFQELLDFVEEGQFDRLGAFTYS  325 (430)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeeecc
Confidence            5689999 9999999999999999999999888875

This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.

>PRK08445 hypothetical protein; Provisional

Probab=91.59  E-value=0.14  Score=45.39  Aligned_cols=32  Identities=16%  Similarity=0.253  Sum_probs=28.3

Q ss_pred             cceeeecCCCHHHHHHHHHHHHHcCCCeeeee
Q psy6794           4 SSIMLGLGETDAEVQQTLDDLLAAGVDCVTLG   35 (165)
Q Consensus         4 s~~m~glge~~~ev~~~~~dl~~~~~d~~tig   35 (165)
                      ||+|+|+|||.++..+.+..|++.+++..-++
T Consensus       200 sg~i~G~~Et~edr~~~l~~lreLq~~~~g~~  231 (348)
T PRK08445        200 ATMMFGTVENDEEIIEHWERIRDLQDETGGFR  231 (348)
T ss_pred             eEEEecCCCCHHHHHHHHHHHHHHHHHhCCee
Confidence            78999999999999999999999999864333

>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme

Probab=91.54  E-value=0.28  Score=43.80  Aligned_cols=35  Identities=23%  Similarity=0.443  Sum_probs=31.2

Q ss_pred             cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794           4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM   38 (165)
Q Consensus         4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl   38 (165)
                      +.+|+|| |||+|++.++++-+.+.+.|.+.+-.|.
T Consensus       293 ~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~s  328 (414)
T TIGR01579       293 TDIIVGFPGESEEDFQETLRMVKEIEFSHLHIFPYS  328 (414)
T ss_pred             eeEEEECCCCCHHHHHHHHHHHHhCCCCEEEeeecC
Confidence            5689999 9999999999999999999988877653

This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.

>PRK06245 cofG FO synthase subunit 1; Reviewed

Probab=91.41  E-value=0.21  Score=43.33  Aligned_cols=27  Identities=22%  Similarity=0.439  Sum_probs=23.8

Q ss_pred             ccceeeecCCCHHHHHHHHHHHHHcCC
Q psy6794           3 ESSIMLGLGETDAEVQQTLDDLLAAGV   29 (165)
Q Consensus         3 ks~~m~glge~~~ev~~~~~dl~~~~~   29 (165)
                      .+++|+|+|||++++.+.|..|++.+.
T Consensus       170 ~~~~i~G~gEt~ed~~~~l~~l~~l~~  196 (336)
T PRK06245        170 TTGILIGIGETWEDRAESLEAIAELHE  196 (336)
T ss_pred             eeeeeeECCCCHHHHHHHHHHHHHHHH
Confidence            478999999999999999888888754

>PRK09234 fbiC FO synthase; Reviewed

Probab=91.23  E-value=0.24  Score=49.12  Aligned_cols=36  Identities=25%  Similarity=0.390  Sum_probs=31.1

Q ss_pred             ccceeeecCCCHHHHHHHHHHHHHc-----CCCeeeeeecc
Q psy6794           3 ESSIMLGLGETDAEVQQTLDDLLAA-----GVDCVTLGQYM   38 (165)
Q Consensus         3 ks~~m~glge~~~ev~~~~~dl~~~-----~~d~~tigqyl   38 (165)
                      =||+|+|+|||.+|..+.|..||+.     |++-+.+.-|+
T Consensus       235 tsG~L~GiGEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~  275 (843)
T PRK09234        235 TTGILIGIGETLAERAESLFAIRKLHREYGHIQEVIVQNFR  275 (843)
T ss_pred             cceEEEECCCCHHHHHHHHHHHHHhhHhhCCCcEEeecccc
Confidence            3899999999999999999999998     67767766665

>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM

Probab=90.79  E-value=0.41  Score=36.25  Aligned_cols=36  Identities=28%  Similarity=0.420  Sum_probs=32.6

Q ss_pred             ccceeeecC-CCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794           3 ESSIMLGLG-ETDAEVQQTLDDLLAAGVDCVTLGQYM   38 (165)
Q Consensus         3 ks~~m~glg-e~~~ev~~~~~dl~~~~~d~~tigqyl   38 (165)
                      +.++|+|++ ++.+++.+.++-+++.|++-+.+.+|.
T Consensus       154 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  190 (216)
T smart00729      154 STDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLS  190 (216)
T ss_pred             EEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeee
Confidence            467899996 999999999999999999999999887

This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.

>TIGR00089 RNA modification enzyme, MiaB family

Probab=90.68  E-value=0.33  Score=43.54  Aligned_cols=36  Identities=28%  Similarity=0.429  Sum_probs=32.3

Q ss_pred             cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeeccC
Q psy6794           4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYMQ   39 (165)
Q Consensus         4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl~   39 (165)
                      +.+|+|+ |||++++.++++-+.+.+.|.+.+-.|..
T Consensus       294 ~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp  330 (429)
T TIGR00089       294 TDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSP  330 (429)
T ss_pred             eeEEEECCCCCHHHHHHHHHHHHhcCCCEeeccccCC
Confidence            4689998 99999999999999999999888877653

This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.

>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type

Probab=90.23  E-value=0.43  Score=43.00  Aligned_cols=34  Identities=21%  Similarity=0.459  Sum_probs=31.7

Q ss_pred             cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794           4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQY   37 (165)
Q Consensus         4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqy   37 (165)
                      +.+|+|+ |||++++.++++-+.+.+.+.+.+-.|
T Consensus       288 ~~~IvG~PgET~ed~~~t~~~~~~~~~~~i~~~~~  322 (420)
T TIGR01578       288 TDIIVGFPTETDDDFEETMELLRKYRPEKINITKF  322 (420)
T ss_pred             eeEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEEEe
Confidence            5699999 999999999999999999999888877

This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.

>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ

Probab=88.04  E-value=0.68  Score=42.03  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=30.9

Q ss_pred             ccceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794           3 ESSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQY   37 (165)
Q Consensus         3 ks~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqy   37 (165)
                      ..++|+|+ |||.+++.++++-+.+.+.+.+++..+
T Consensus       340 ~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~~~~l  375 (472)
T TIGR03471       340 HGTFILGLPGETRETIRKTIDFAKELNPHTIQVSLA  375 (472)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHHhcCCCceeeeec
Confidence            35789998 999999999999999999998887654

One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.

>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=88.02  E-value=0.72  Score=41.72  Aligned_cols=34  Identities=29%  Similarity=0.447  Sum_probs=29.6

Q ss_pred             cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794           4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQY   37 (165)
Q Consensus         4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqy   37 (165)
                      +.+|+|+ |||++++.++++-+.+.+.|.+.+-.|
T Consensus       300 ~d~IvG~PgET~ed~~~tl~~l~~l~~~~i~~f~~  334 (437)
T PRK14331        300 TDIIVGFPTETEEDFEETLDVLKKVEFEQVFSFKY  334 (437)
T ss_pred             cCEEEECCCCCHHHHHHHHHHHHhcCcceeeeeEe
Confidence            4589997 999999999999999999987666555

>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=88.01  E-value=0.76  Score=42.00  Aligned_cols=35  Identities=34%  Similarity=0.511  Sum_probs=32.0

Q ss_pred             cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794           4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM   38 (165)
Q Consensus         4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl   38 (165)
                      +.||+|+ |||++++.++++-+.+.+.+.+.+-.|.
T Consensus       310 ~d~IvG~PgET~ed~~~ti~~l~~l~~~~v~i~~ys  345 (459)
T PRK14338        310 TDIIVGHPGETEEQFQRTYDLLEEIRFDKVHIAAYS  345 (459)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHcCCCEeEEEecC
Confidence            4589998 9999999999999999999999888886

>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=87.99  E-value=0.72  Score=41.66  Aligned_cols=35  Identities=29%  Similarity=0.410  Sum_probs=31.1

Q ss_pred             cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794           4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM   38 (165)
Q Consensus         4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl   38 (165)
                      +.+|+|+ |||++++.++++-+.+.+.+.+.+-+|.
T Consensus       304 ~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~s  339 (444)
T PRK14325        304 SDFIVGFPGETDEDFEATMKLIEDVGFDQSFSFIYS  339 (444)
T ss_pred             eeEEEECCCCCHHHHHHHHHHHHhcCCCeeeeeecc
Confidence            4689998 9999999999999999999988777665

>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB

Probab=87.71  E-value=0.81  Score=41.40  Aligned_cols=34  Identities=32%  Similarity=0.493  Sum_probs=30.9

Q ss_pred             cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794           4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQY   37 (165)
Q Consensus         4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqy   37 (165)
                      +.||+|+ |||++++.++++-+.+.+.|.+.+-+|
T Consensus       302 ~d~IvG~PgEt~ed~~~tl~~i~~~~~~~~~~~~~  336 (438)
T TIGR01574       302 TDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIY  336 (438)
T ss_pred             eCEEEeCCCCCHHHHHHHHHHHHhcCCCeeeeEEe
Confidence            4689998 999999999999999999998877776

Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.

>PRK09234 fbiC FO synthase; Reviewed

Probab=87.28  E-value=0.6  Score=46.36  Aligned_cols=33  Identities=18%  Similarity=0.054  Sum_probs=28.8

Q ss_pred             ccceeeecCCCHHHHHHHHHHHHHcCCCeeeee
Q psy6794           3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLG   35 (165)
Q Consensus         3 ks~~m~glge~~~ev~~~~~dl~~~~~d~~tig   35 (165)
                      =||+|+|+|||.++..+.|..||+.+++..-+.
T Consensus       683 ~stmm~G~~Et~edrv~hl~~LreLq~~tgGf~  715 (843)
T PRK09234        683 SSTMMYGHVDTPRHWVAHLRVLRDIQDRTGGFT  715 (843)
T ss_pred             ccceEEcCCCCHHHHHHHHHHHHhcCcccCCee
Confidence            489999999999999999999999999854333

>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional

Probab=87.07  E-value=0.93  Score=41.23  Aligned_cols=35  Identities=37%  Similarity=0.491  Sum_probs=31.1

Q ss_pred             cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794           4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM   38 (165)
Q Consensus         4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl   38 (165)
                      +.+|+|+ |||++++.++++-+++.++|.+.+-.|.
T Consensus       301 t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ys  336 (440)
T PRK14862        301 STFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYS  336 (440)
T ss_pred             ccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeec
Confidence            5789997 9999999999999999999988776653

>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase

Probab=85.88  E-value=1.1  Score=41.23  Aligned_cols=36  Identities=25%  Similarity=0.346  Sum_probs=31.2

Q ss_pred             cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeeccCC
Q psy6794           4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYMQP   40 (165)
Q Consensus         4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl~p   40 (165)
                      .++|+|+ |||.+++.++++-+.+.+.|.+.+. .+.|
T Consensus       341 ~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~~~-~~tP  377 (497)
T TIGR02026       341 AQFITGFENETDETFEETYRQLLDWDPDQANWL-MYTP  377 (497)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHcCCCceEEE-EecC
Confidence            4689998 9999999999999999999988885 3444

This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.

>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=85.65  E-value=1.2  Score=41.40  Aligned_cols=34  Identities=35%  Similarity=0.506  Sum_probs=30.1

Q ss_pred             cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794           4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQY   37 (165)
Q Consensus         4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqy   37 (165)
                      +.||+|+ |||++++.++++-+.+.+.|.+.+-+|
T Consensus       312 ~~~IvGfPgET~edf~~Tl~~i~~~~~~~~~~f~~  346 (502)
T PRK14326        312 TDIIVGFPGETEEDFQATLDVVREARFSSAFTFQY  346 (502)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEee
Confidence            4589998 999999999999999999997766665

>PRK08207 coproporphyrinogen III oxidase; Provisional

Probab=85.31  E-value=1.2  Score=41.54  Aligned_cols=34  Identities=26%  Similarity=0.481  Sum_probs=31.2

Q ss_pred             cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794           4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQY   37 (165)
Q Consensus         4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqy   37 (165)
                      ..+|+|| |||.+++.++++.+.+.++|-+++-.+
T Consensus       324 ~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L  358 (488)
T PRK08207        324 MDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTL  358 (488)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEec
Confidence            4689998 999999999999999999999998875

>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=84.78  E-value=1.4  Score=40.04  Aligned_cols=35  Identities=31%  Similarity=0.489  Sum_probs=31.4

Q ss_pred             cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794           4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM   38 (165)
Q Consensus         4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl   38 (165)
                      +.||+|| |||++++.++++-+.+.+.|.+.+-.|.
T Consensus       292 ~d~IvG~PgEt~ed~~~tl~~i~~l~~~~i~~f~ys  327 (440)
T PRK14334        292 TDIIVGFPGETEEDFQETLSLYDEVGYDSAYMFIYS  327 (440)
T ss_pred             EeEEEECCCCCHHHHHHHHHHHHhcCCCEeeeeEee
Confidence            4588997 9999999999999999999988888775

>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=83.99  E-value=1.3  Score=40.05  Aligned_cols=35  Identities=29%  Similarity=0.440  Sum_probs=29.8

Q ss_pred             cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794           4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM   38 (165)
Q Consensus         4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl   38 (165)
                      +.+|+|+ |||++++.++++-+.+.+.+.+.+-.|.
T Consensus       302 ~d~IvG~PgET~ed~~~tl~~i~~l~~~~~~~~~~s  337 (439)
T PRK14328        302 TDIIVGFPGETEEDFEETLDLVKEVRYDSAFTFIYS  337 (439)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHhcCCCcccceEec
Confidence            4589997 9999999999999999998876655553

>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed

Probab=83.82  E-value=0.76  Score=40.92  Aligned_cols=27  Identities=19%  Similarity=0.108  Sum_probs=24.5

Q ss_pred             cceeeecCCCHHHHHHHHHHHHHcCCC
Q psy6794           4 SSIMLGLGETDAEVQQTLDDLLAAGVD   30 (165)
Q Consensus         4 s~~m~glge~~~ev~~~~~dl~~~~~d   30 (165)
                      ||+|+||||+.+|+++++..|+..+++
T Consensus       221 ~g~i~Glge~~~d~~~~a~~l~~L~~~  247 (371)
T PRK09240        221 LGALLGLSDWRTDALMTALHLRYLQRK  247 (371)
T ss_pred             eEEEecCCccHHHHHHHHHHHHHHHHh
Confidence            899999999999999999988888775

>PRK08599 coproporphyrinogen III oxidase; Provisional

Probab=83.29  E-value=1.4  Score=38.78  Aligned_cols=33  Identities=18%  Similarity=0.301  Sum_probs=29.5

Q ss_pred             ceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeec
Q psy6794           5 SIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQY   37 (165)
Q Consensus         5 ~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqy   37 (165)
                      .+|+|| |||.+++.++++.+.+.+++.+++-.+
T Consensus       156 dli~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~l  189 (377)
T PRK08599        156 DLIYALPGQTIEDFKESLAKALALDIPHYSAYSL  189 (377)
T ss_pred             eeecCCCCCCHHHHHHHHHHHHccCCCEEeeece
Confidence            589999 999999999999999999998877653

>PRK05799 coproporphyrinogen III oxidase; Provisional

Probab=83.23  E-value=1.4  Score=38.65  Aligned_cols=33  Identities=18%  Similarity=0.350  Sum_probs=29.9

Q ss_pred             cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeee
Q psy6794           4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQ   36 (165)
Q Consensus         4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigq   36 (165)
                      ..+|+|| |||.+++.++++.+.+.+++-+++=.
T Consensus       154 ~dli~GlPgqt~e~~~~~l~~~~~l~~~~is~y~  187 (374)
T PRK05799        154 VDLMFGLPNQTLEDWKETLEKVVELNPEHISCYS  187 (374)
T ss_pred             EEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence            3689998 99999999999999999999888765

>cd01335 Radical_SAM Radical SAM superfamily

Probab=82.32  E-value=1.3  Score=32.92  Aligned_cols=38  Identities=24%  Similarity=0.397  Sum_probs=30.4

Q ss_pred             ccceeeecCCCH-HHHHHHHHHHHHcC-CCeeeeeeccCC
Q psy6794           3 ESSIMLGLGETD-AEVQQTLDDLLAAG-VDCVTLGQYMQP   40 (165)
Q Consensus         3 ks~~m~glge~~-~ev~~~~~dl~~~~-~d~~tigqyl~p   40 (165)
                      .+.+|+|+++.+ +++.+.++++.+.+ ++.+.+.+|..-
T Consensus       142 ~~~~i~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~  181 (204)
T cd01335         142 STTLLVGLGDEDEEDDLEELELLAEFRSPDRVSLFRLLPE  181 (204)
T ss_pred             eEEEEEecCCChhHHHHHHHHHHHhhcCcchhhhhhhccc
Confidence            467888888886 88888888888888 888888777643

Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	165
3t7v_A	350	Methylornithine synthase PYLB; TIM-barrel fold, mu	95.41
2qgq_A	304	Protein TM_1862; alpha-beta protein, structural ge	94.17
3iix_A	348	Biotin synthetase, putative; adoMet radical, SAM r	92.94
1r30_A	369	Biotin synthase; SAM radical protein, TIM barrel,	92.26
1olt_A	457	Oxygen-independent coproporphyrinogen III oxidase;	92.17

>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}

Probab=95.41  E-value=0.015  Score=48.69  Aligned_cols=37  Identities=19%  Similarity=0.329  Sum_probs=33.9

Q ss_pred             ccceeeecCCCHHHHHHHHHHHHHcCCCeeeeeeccC
Q psy6794           3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLGQYMQ   39 (165)
Q Consensus         3 ks~~m~glge~~~ev~~~~~dl~~~~~d~~tigqyl~   39 (165)
                      .+++|+|+|||.+++.+.++.|++.+++.+.+..|.-
T Consensus       205 ~~~~i~Glget~e~~~~~l~~l~~l~~~~v~~~~f~p  241 (350)
T 3t7v_A          205 EDGILTGVGNDIESTILSLRGMSTNDPDMVRVMTFLP  241 (350)
T ss_dssp             EEEEEESSSCCHHHHHHHHHHHHHTCCSEEEEEECCC
T ss_pred             ccceEeecCCCHHHHHHHHHHHHhCCCCEEEecceee
Confidence            4789999999999999999999999999988887764

>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}

Probab=94.17  E-value=0.045  Score=45.30  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=32.4

Q ss_pred             cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794           4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM   38 (165)
Q Consensus         4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl   38 (165)
                      +.+|+|+ |||++++.++++-+++.++|.+.+-.|.
T Consensus       159 ~~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~~~~  194 (304)
T 2qgq_A          159 TSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYS  194 (304)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEee
Confidence            5789999 9999999999999999999998888875

>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*

Probab=92.94  E-value=0.086  Score=43.51  Aligned_cols=36  Identities=28%  Similarity=0.426  Sum_probs=33.4

Q ss_pred             ccceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794           3 ESSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM   38 (165)
Q Consensus         3 ks~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl   38 (165)
                      .+++|+|+ |||.+++.+.++-|++.|++.+.++.|.
T Consensus       195 ~~~~i~G~p~et~e~~~~~~~~l~~l~~~~i~i~~~~  231 (348)
T 3iix_A          195 GAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFI  231 (348)
T ss_dssp             EECBEESCTTCCHHHHHHHHHHHHHHTCSEECCEECC
T ss_pred             ccceEEeCCCCCHHHHHHHHHHHHhcCCCEEeeeeee
Confidence            46899999 9999999999999999999999998875

>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1

Probab=92.26  E-value=0.13  Score=43.47  Aligned_cols=35  Identities=26%  Similarity=0.283  Sum_probs=31.0

Q ss_pred             cceeeecCCCHHHHHHHHHHHHHcC--CCeeeeeecc
Q psy6794           4 SSIMLGLGETDAEVQQTLDDLLAAG--VDCVTLGQYM   38 (165)
Q Consensus         4 s~~m~glge~~~ev~~~~~dl~~~~--~d~~tigqyl   38 (165)
                      +++|+|+|||.+++.++++.|++.+  ++.+.+..+.
T Consensus       212 ~~~I~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~l~  248 (369)
T 1r30_A          212 SGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLV  248 (369)
T ss_dssp             CCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECC
T ss_pred             eeeEeeCCCCHHHHHHHHHHHHhhcCCCCEEEeeeee
Confidence            6799999999999999999999998  7777777654

>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2

Probab=92.17  E-value=0.15  Score=44.73  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=33.2

Q ss_pred             cceeeec-CCCHHHHHHHHHHHHHcCCCeeeeeecc
Q psy6794           4 SSIMLGL-GETDAEVQQTLDDLLAAGVDCVTLGQYM   38 (165)
Q Consensus         4 s~~m~gl-ge~~~ev~~~~~dl~~~~~d~~tigqyl   38 (165)
                      ..+|+|| |||.+++.++++.+.+.++|-+.+-+|.
T Consensus       208 ~dlI~GlPget~e~~~~tl~~~~~l~~~~i~~y~l~  243 (457)
T 1olt_A          208 IDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYA  243 (457)
T ss_dssp             EEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECC
T ss_pred             EEEEcCCCCCCHHHHHHHHHHHHhcCcCEEEeecCc
Confidence            5689999 9999999999999999999999999987

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	165
d1r30a_	312	Biotin synthase {Escherichia coli [TaxId: 562]}	95.21

>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Biotin synthase
domain: Biotin synthase
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.0062  Score=47.74  Aligned_cols=33  Identities=24%  Similarity=0.145  Sum_probs=28.9

Q ss_pred             ccceeeecCCCHHHHHHHHHHHHHcCCCeeeee
Q psy6794           3 ESSIMLGLGETDAEVQQTLDDLLAAGVDCVTLG   35 (165)
Q Consensus         3 ks~~m~glge~~~ev~~~~~dl~~~~~d~~tig   35 (165)
                      -+++|+|+|||.+|+++.|..|++.+.+...++
T Consensus       185 ~~~~i~G~~et~~d~~~~l~~l~~l~~~~~~i~  217 (312)
T d1r30a_         185 CSGGIVGLGETVKDRAGLLLQLANLPTPPESVP  217 (312)
T ss_dssp             ECCEEECSSCCHHHHHHHHHHHHSSSSCCSEEE
T ss_pred             ecceEecCcCcHHHHHHHHHHHHhcCCCCCeee
Confidence            479999999999999999999999888755554