Psyllid ID: psy67

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520------
TLFGLRKVNEERRRVAWTDSGGVSETAFDGGKTNICRRAVSRTSGSLMRPLYGPVPAISMSRPRRSFRDSFRRRKDQHMPESSKPHQWQSDEASVRAGTCYFHVKVCLGKVKQGEEHSVFMRFGYRPSGDVLHLSASAFKYLGCVEVYESRGMQVCEDALKVVLIYMFALCYLGCVEVYESRGMQVCEDALKVLRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLERKQKRDKECGVTMNFDTTNSTFTRSGSFRQPTLTDRIIDGEVDMPVSPLSPPPNSVPTTPGSVKPPNPHAIERPHAPIPLLQRQGSFRGFSQLNQASPFKRQLSLRIGDLPSNLERTRLQQLSLTQANHANNIAPLIYLKTPVSPIPESISPLKSNGDPGERLSHAVGCAFAACLERKQKRDKECGVTMNFDTTNSTFTRSGSFRQPTLTDRIIDGE
ccccccccHHHHccEEEccccccccEEcccccEEEEccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccEEccEEEcccccccccccccEEcccccccccccccccHHcccccccccccccccccHHHHHHHHHHHHHHccccccccccccccEEcccccEEEEEEEEEEccccccHHHHHHHHHHHHHccccccEEEEEEEccEEEEEEcccccEEEEEEccEEEEEEcccccccEEEEEEEccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccc
ccccccEccHHHHHEEEEcccccccEccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHccccccccccccccccccccccHHHHccccccccHHHHHHHHHHHHccEEEEcccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccEEEEEEEccEEEcccccHHHHHHHHHHHHHccccccEEEEEEEcccEEEEccccccEEEEEEEEEEEEEccccccccEEEEEEEcccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccHHHcEEEcccccccHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEcccccEEEccccccccHHHHHHccc
TLFGLRKVNEERRRvawtdsggvsetafdggktnicrravsrtsgslmrplygpvpaismsrprrsfrdsfrrrkdqhmpesskphqwqsdeasvragTCYFHVKVCLgkvkqgeehSVFMrfgyrpsgdvlHLSASAFKYLGCVEVYESRGMQVCEDALKVVLIYMFALCYLGCVEVYESRGMQVCEDALKVLRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSgdglrvvddetkglmvdQTIEKvsfcapdrnhekgfsyicrdgttrrwMCHGFLALKESGERLSHAVGCAFAACLERKQkrdkecgvtmnfdttnstftrsgsfrqptltdriidgevdmpvsplspppnsvpttpgsvkppnphaierphapipllqrqgsfrgfsqlnqaspfkrqlslrigdlpsnlerTRLQQLSLTQAnhanniapliylktpvspipesisplksngdpgerlsHAVGCAFAACLERKQkrdkecgvtmnfdttnstftrsgsfrqptltdriidge
tlfglrkvneerrrvawtdsggvsetafdggktnicrravsrtsgslmrplygpvpaismsrprrSFRDSFRRRkdqhmpesskphqwqsdEASVRAGTCYFHVKVCLGKVKQGEEHSVFMRFGYRPSGDVLHLSASAFKYLGCVEVYESRGMQVCEDALKVVLIYMFALCYLGCVEVYESRGMQVCEDALKVLRYLGCVEVYESRGMQVCEDALkvlrnsrrrpvrailyvsgdglrvvddetkglmvdqTIEKVsfcapdrnhekgFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLERkqkrdkecgvtmnfdttnstftrsgsfrqptLTDRIIDGEVDMPVSPLSPPPNSVPTTPGSVKPPNPHAIERPHAPIPLLQRQGSFRGFSQLNQASPFKRQLSLRIGDLPSNLERTRLQQLSLTQANHANNIAPLIYLKTPVSPIPESISPLKSNGDPGERLSHAVGCAFAACLERkqkrdkecgvtmnfdttnstftrsgsfrqptltdriidge
TLFGLRKVNEERRRVAWTDSGGVSETAFDGGKTNICRRAVSRTSGSLMRPLYGPVPAIsmsrprrsfrdsfrrrKDQHMPESSKPHQWQSDEASVRAGTCYFHVKVCLGKVKQGEEHSVFMRFGYRPSGDVLHLSASAFKYLGCVEVYESRGMQVCEDALKVVLIYMFALCYLGCVEVYESRGMQVCEDALKVLRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLERKQKRDKECGVTMNFDTTNSTFTRSGSFRQPTLTDRIIDGEVDMpvsplspppnsvpttpgsvKPPNPHAIERPHAPIPLLQRQGSFRGFSQLNQASPFKRQLSLRIGDLPSNLERTRLQQLSLTQANHANNIAPLIYLKTPVSPIPESISPLKSNGDPGERLSHAVGCAFAACLERKQKRDKECGVTMNFDTTNSTFTRSGSFRQPTLTDRIIDGE
****************W**********FDGGKTNICRR********************************************************VRAGTCYFHVKVCLGKVKQGEEHSVFMRFGYRPSGDVLHLSASAFKYLGCVEVYESRGMQVCEDALKVVLIYMFALCYLGCVEVYESRGMQVCEDALKVLRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLERKQK*DKECGVTMNFD***********************************************************************************************************LTQANHANNIAPLIYLKTP**********************HAVGCAFAACLERK******CGVTMNF**************************
**FG***VNEERRRVAWTDSGGVSETAFDGGKTNICRRAV****************************************************************************************GDVLHLSASAFKYLGCVEVY****************IYMFALCYLG**********QVCEDALKVLRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAAC***************************************************************************************************************************************************************************************************************************
TLFGLRKVNEERRRVAWTDSGGVSETAFDGGKTNICRRAVSRTSGSLMRPLYGPVPAISMSRPRRSFR*************************SVRAGTCYFHVKVCLGKVKQGEEHSVFMRFGYRPSGDVLHLSASAFKYLGCVEVYESRGMQVCEDALKVVLIYMFALCYLGCVEVYESRGMQVCEDALKVLRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLERKQKRDKECGVTMNFDTTNSTFTRSGSFRQPTLTDRIIDGEVDMPVSP*****************PNPHAIERPHAPIPLLQRQGSFRGFSQLNQASPFKRQLSLRIGDLPSNLERTRLQQLSLTQANHANNIAPLIYLKTPVSPIPESISPLKSNGDPGERLSHAVGCAFAACLERKQKRDKECGVTMNFDTTNSTFTRSGSFRQPTLTDRIIDGE
*LFGLRKVNEERRRVAWTDSGGVSETAFDGGKTNICRRAVSRTSGSLMRPLYGPVPAISMSRPRRSFRDSFRRRKDQHMPESS***************************************FG**PSGDVLHLSASAFKYLGCVEVYESRGMQVCEDALKVVLIYMFALCYL*CVEVYESRGMQVCEDALKVLRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLERKQKRDKECGVTMNFDT*************************************************************P**QRQGSFRGFSQLNQASPFKRQLSLRIGDLPS************************************************ERLSHAVGCAFAACLERKQKRDKECGVTMNFDTTNSTFTRSGSFRQ***********
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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TLFGLRKVNEERRRVAWTDSGGVSETAFDGGKTNICRRAVSRTSGSLMRPLYGPVPAISMSRPRRSFRDSFRRRKDQHMPESSKPHQWQSDEASVRAGTCYFHVKVCLGKVKQGEEHSVFMRFGYRPSGDVLHLSASAFKYLGCVEVYESRGMQVCEDALKVVLIYMFALCYLGCVEVYESRGMQVCEDALKVLRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLERKQKRDKECGVTMNFDTTNSTFTRSGSFRQPTLTDRIIDGEVDMPVSPLSPPPNSVPTTPGSVKPPNPHAIERPHAPIPLLQRQGSFRGFSQLNQASPFKRQLSLRIGDLPSNLERTRLQQLSLTQANHANNIAPLIYLKTPVSPIPESISPLKSNGDPGERLSHAVGCAFAACLERKQKRDKECGVTMNFDTTNSTFTRSGSFRQPTLTDRIIDGE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query526 2.2.26 [Sep-21-2011]
P16554 556 Protein numb OS=Drosophil yes N/A 0.505 0.478 0.689 4e-99
Q2LC84 652 Protein numb homolog OS=R yes N/A 0.528 0.426 0.466 2e-82
Q9QZS3 653 Protein numb homolog OS=M yes N/A 0.532 0.428 0.459 3e-80
P49757 651 Protein numb homolog OS=H yes N/A 0.532 0.430 0.456 1e-79
Q9Y6R0 609 Numb-like protein OS=Homo no N/A 0.463 0.400 0.547 7e-73
O08919 604 Numb-like protein OS=Mus no N/A 0.452 0.394 0.560 3e-72
A1L1I3 614 Numb-like protein OS=Ratt no N/A 0.452 0.387 0.560 4e-72
Q9XTY6 593 Numb-related protein 1 OS yes N/A 0.296 0.263 0.632 2e-54
Q32PV0300 PTB domain-containing eng no N/A 0.207 0.363 0.264 4e-09
Q9UBP9304 PTB domain-containing eng no N/A 0.207 0.358 0.264 4e-09
>sp|P16554|NUMB_DROME Protein numb OS=Drosophila melanogaster GN=numb PE=1 SV=2 Back     alignment and function desciption
 Score =  362 bits (929), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 191/277 (68%), Positives = 217/277 (78%), Gaps = 11/277 (3%)

Query: 194 LRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTI 253
           ++YLGCVEV+ESRGMQVCE+ALKVLR SRRRPVR +L+VSGDGLRVVDDETKGL+VDQTI
Sbjct: 85  VKYLGCVEVFESRGMQVCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVDQTI 144

Query: 254 EKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLERKQK 313
           EKVSFCAPDRNHE+GFSYICRDGTTRRWMCHGFLA K+SGERLSHAVGCAFA CLERKQ+
Sbjct: 145 EKVSFCAPDRNHERGFSYICRDGTTRRWMCHGFLACKDSGERLSHAVGCAFAVCLERKQR 204

Query: 314 RDKECGVTMNFDTTNSTFTRSGSFRQPTLTDRIIDGEVDMPVSPLSPPPNSVPTTP-GSV 372
           RDKECGVTM FDT NSTFTR+GSFRQ TLT+R+    V      +  P +++P  P  +V
Sbjct: 205 RDKECGVTMTFDTKNSTFTRTGSFRQQTLTERLAMATVGTNERSVDGPGSAMPGPPAATV 264

Query: 373 KPPNPHAIERPHAPIPLLQRQGSFRGFSQLNQASPFKRQLSLRIGDLPSNLERTRLQQLS 432
           KP NP AIERPHA   +L+RQ SFR  S +   SPFKRQ+SLRI DLPSN +R   Q+  
Sbjct: 265 KPFNPFAIERPHATPNMLERQSSFR-LSTIGSQSPFKRQMSLRINDLPSNADR---QRAF 320

Query: 433 LTQANHANNIAPLIYLKTPVSPIPESISPLKSNG-DP 468
           LT A  A N  P+      VSPI E +SP KS G DP
Sbjct: 321 LTAA--AGN--PMQTPLRSVSPIAE-VSPAKSAGADP 352
Required in determination of cell fate during sensory organ formation in embryos. Functions in nuclei and seems to interact with nucleic acids.
Drosophila melanogaster (taxid: 7227)
>sp|Q2LC84|NUMB_RAT Protein numb homolog OS=Rattus norvegicus GN=Numb PE=1 SV=2 Back     alignment and function description
>sp|Q9QZS3|NUMB_MOUSE Protein numb homolog OS=Mus musculus GN=Numb PE=1 SV=1 Back     alignment and function description
>sp|P49757|NUMB_HUMAN Protein numb homolog OS=Homo sapiens GN=NUMB PE=1 SV=2 Back     alignment and function description
>sp|Q9Y6R0|NUMBL_HUMAN Numb-like protein OS=Homo sapiens GN=NUMBL PE=1 SV=1 Back     alignment and function description
>sp|O08919|NUMBL_MOUSE Numb-like protein OS=Mus musculus GN=Numbl PE=1 SV=3 Back     alignment and function description
>sp|A1L1I3|NUMBL_RAT Numb-like protein OS=Rattus norvegicus GN=Numbl PE=1 SV=1 Back     alignment and function description
>sp|Q9XTY6|NUMB1_CAEEL Numb-related protein 1 OS=Caenorhabditis elegans GN=num-1 PE=1 SV=1 Back     alignment and function description
>sp|Q32PV0|GULP1_DANRE PTB domain-containing engulfment adapter protein 1 OS=Danio rerio GN=gulp1 PE=2 SV=1 Back     alignment and function description
>sp|Q9UBP9|GULP1_HUMAN PTB domain-containing engulfment adapter protein 1 OS=Homo sapiens GN=GULP1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query526
307168565617 Protein numb [Camponotus floridanus] 0.479 0.408 0.738 1e-108
340719070 668 PREDICTED: protein numb-like [Bombus ter 0.479 0.377 0.724 1e-107
350398977 669 PREDICTED: protein numb-like [Bombus imp 0.479 0.376 0.724 1e-107
328779522 667 PREDICTED: protein numb-like [Apis melli 0.479 0.377 0.720 1e-106
380013068 669 PREDICTED: protein numb-like [Apis flore 0.479 0.376 0.716 1e-106
383859692625 PREDICTED: protein numb-like isoform 2 [ 0.479 0.403 0.727 1e-106
307210867620 Protein numb [Harpegnathos saltator] 0.479 0.406 0.731 1e-106
383859690 665 PREDICTED: protein numb-like isoform 1 [ 0.479 0.378 0.709 1e-104
345484977 680 PREDICTED: protein numb-like [Nasonia vi 0.479 0.370 0.727 1e-104
332021708615 Protein numb [Acromyrmex echinatior] 0.477 0.408 0.719 1e-104
>gi|307168565|gb|EFN61623.1| Protein numb [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/272 (73%), Positives = 224/272 (82%), Gaps = 20/272 (7%)

Query: 194 LRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTI 253
           ++YLGCVEV+ESRGMQVCE+ALKVLRNSRRRPVRAIL+VSGDGLRVV+DETKGL+VDQTI
Sbjct: 45  VKYLGCVEVFESRGMQVCEEALKVLRNSRRRPVRAILHVSGDGLRVVEDETKGLIVDQTI 104

Query: 254 EKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLERKQK 313
           EKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLERKQ+
Sbjct: 105 EKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLERKQR 164

Query: 314 RDKECGVTMNFDTTNSTFTRSGSFRQPTLTDRII---DGEVDMPVSPLSPPPNSVPTTPG 370
           RDKECGVTM FD+  STFTRSGSFRQP+LT+R+    D  VD+      PP   V     
Sbjct: 165 RDKECGVTMTFDSKTSTFTRSGSFRQPSLTERLQESRDRAVDV------PPVKQV----- 213

Query: 371 SVKPPNPHAIERPHAPIPLLQRQGSFRGFSQLNQASPFKRQLSLRIGDLPSNLERTRLQQ 430
                NP AIERPHA   +L+RQGSFRGF+QLNQASPFKRQLSLR+ DLPSNLERTR   
Sbjct: 214 ----YNPFAIERPHATPSMLERQGSFRGFTQLNQASPFKRQLSLRVNDLPSNLERTRSHS 269

Query: 431 LSLTQ-ANHANNIAPLIYLKTPVSPIPESISP 461
           L  T  +   + ++ ++ LK PVSPIPE ISP
Sbjct: 270 LEPTDLSRMPSALSHIVPLKPPVSPIPE-ISP 300

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|340719070|ref|XP_003397980.1| PREDICTED: protein numb-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350398977|ref|XP_003485371.1| PREDICTED: protein numb-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|328779522|ref|XP_001123108.2| PREDICTED: protein numb-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380013068|ref|XP_003690592.1| PREDICTED: protein numb-like [Apis florea] Back     alignment and taxonomy information
>gi|383859692|ref|XP_003705326.1| PREDICTED: protein numb-like isoform 2 [Megachile rotundata] Back     alignment and taxonomy information
>gi|307210867|gb|EFN87220.1| Protein numb [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383859690|ref|XP_003705325.1| PREDICTED: protein numb-like isoform 1 [Megachile rotundata] Back     alignment and taxonomy information
>gi|345484977|ref|XP_001605074.2| PREDICTED: protein numb-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|332021708|gb|EGI62064.1| Protein numb [Acromyrmex echinatior] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query526
FB|FBgn0002973 556 numb "numb" [Drosophila melano 0.543 0.514 0.643 1.9e-90
ZFIN|ZDB-GENE-060422-1 680 numb "numb homolog (Drosophila 0.465 0.360 0.524 3.6e-76
RGD|620107 652 Numb "numb homolog (Drosophila 0.465 0.375 0.533 7.5e-76
UNIPROTKB|P49757 651 NUMB "Protein numb homolog" [H 0.465 0.376 0.528 2.5e-75
MGI|MGI:107423 653 Numb "numb gene homolog (Droso 0.465 0.375 0.528 2.5e-75
UNIPROTKB|Q9Y6R0 609 NUMBL "Numb-like protein" [Hom 0.275 0.238 0.744 1.1e-73
UNIPROTKB|F1P3F5 585 NUMB "Uncharacterized protein" 0.300 0.270 0.683 1.2e-73
ZFIN|ZDB-GENE-051113-340 640 numbl "numb homolog (Drosophil 0.441 0.362 0.611 5.3e-72
UNIPROTKB|E1B8G1 654 NUMB "Uncharacterized protein" 0.393 0.316 0.562 2.3e-70
UNIPROTKB|E2RE97 598 NUMBL "Uncharacterized protein 0.275 0.242 0.744 2.9e-70
FB|FBgn0002973 numb "numb" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
 Identities = 191/297 (64%), Positives = 213/297 (71%)

Query:   194 LRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTI 253
             ++YLGCVEV+ESRGMQVCE+ALKVLR SRRRPVR +L+VSGDGLRVVDDETKGL+VDQTI
Sbjct:    85 VKYLGCVEVFESRGMQVCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVDQTI 144

Query:   254 EKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLERKQK 313
             EKVSFCAPDRNHE+GFSYICRDGTTRRWMCHGFLA K+SGERLSHAVGCAFA CLERKQ+
Sbjct:   145 EKVSFCAPDRNHERGFSYICRDGTTRRWMCHGFLACKDSGERLSHAVGCAFAVCLERKQR 204

Query:   314 RDKECGVTMNFDTTNSTFTRSGSFRQPTLTDRIIDGEVDMXXXXXXXXXXXXXXX-XXXX 372
             RDKECGVTM FDT NSTFTR+GSFRQ TLT+R+    V                      
Sbjct:   205 RDKECGVTMTFDTKNSTFTRTGSFRQQTLTERLAMATVGTNERSVDGPGSAMPGPPAATV 264

Query:   373 KPPNPHAIERPHAPIPLLQRQGSFRGFSQLNQASPFKRQLSLRIGDLPSNLERTRLQQLS 432
             KP NP AIERPHA   +L+RQ SFR  S +   SPFKRQ+SLRI DLPSN +R   Q+  
Sbjct:   265 KPFNPFAIERPHATPNMLERQSSFR-LSTIGSQSPFKRQMSLRINDLPSNADR---QRAF 320

Query:   433 LTQANHANNIAPLIYLKTPVSPIPESISPLKSNG-DPGERLSHAVGCAFAACLERKQ 488
             LT A  A N  P+      VSPI E +SP KS G DP    + A       C E  Q
Sbjct:   321 LTAA--AGN--PMQTPLRSVSPIAE-VSPAKSAGADPLSAAAVAADSVSQLCQELSQ 372
GO:0005515 "protein binding" evidence=IPI
GO:0061382 "Malpighian tubule tip cell differentiation" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA;TAS
GO:0003676 "nucleic acid binding" evidence=NAS
GO:0016360 "sensory organ precursor cell fate determination" evidence=NAS;TAS
GO:0005634 "nucleus" evidence=NAS
GO:0007219 "Notch signaling pathway" evidence=TAS
GO:0007400 "neuroblast fate determination" evidence=NAS;TAS
GO:0007422 "peripheral nervous system development" evidence=TAS
GO:0045180 "basal cortex" evidence=NAS
GO:0045178 "basal part of cell" evidence=NAS;TAS
GO:0045746 "negative regulation of Notch signaling pathway" evidence=TAS
GO:0045165 "cell fate commitment" evidence=TAS
GO:0007507 "heart development" evidence=TAS
GO:0008593 "regulation of Notch signaling pathway" evidence=TAS
GO:0007622 "rhythmic behavior" evidence=TAS
GO:0008356 "asymmetric cell division" evidence=NAS;TAS
GO:0007417 "central nervous system development" evidence=TAS
GO:0055059 "asymmetric neuroblast division" evidence=IMP;TAS
GO:0007419 "ventral cord development" evidence=NAS
GO:0001709 "cell fate determination" evidence=NAS
GO:0005112 "Notch binding" evidence=TAS
GO:0045035 "sensory organ precursor cell division" evidence=IMP
GO:0061320 "pericardial nephrocyte differentiation" evidence=IMP
GO:0042694 "muscle cell fate specification" evidence=IMP
GO:0045807 "positive regulation of endocytosis" evidence=IMP
GO:0008104 "protein localization" evidence=IMP
GO:0007405 "neuroblast proliferation" evidence=IMP
GO:0005938 "cell cortex" evidence=IDA
GO:0008347 "glial cell migration" evidence=IMP
GO:0050767 "regulation of neurogenesis" evidence=IMP
GO:0051960 "regulation of nervous system development" evidence=IMP
GO:0009786 "regulation of asymmetric cell division" evidence=IMP
GO:0035050 "embryonic heart tube development" evidence=IGI
ZFIN|ZDB-GENE-060422-1 numb "numb homolog (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|620107 Numb "numb homolog (Drosophila)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P49757 NUMB "Protein numb homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:107423 Numb "numb gene homolog (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y6R0 NUMBL "Numb-like protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3F5 NUMB "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-051113-340 numbl "numb homolog (Drosophila)-like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1B8G1 NUMB "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RE97 NUMBL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P16554NUMB_DROMENo assigned EC number0.68950.50570.4784yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query526
cd01268135 cd01268, PTB_Numb, Numb Phosphotyrosine-binding (P 5e-85
pfam00640133 pfam00640, PID, Phosphotyrosine interaction domain 1e-34
smart00462134 smart00462, PTB, Phosphotyrosine-binding domain, p 2e-31
cd00934119 cd00934, PTB, Phosphotyrosine-binding (PTB) PH-lik 4e-22
pfam0631187 pfam06311, NumbF, NUMB domain 5e-21
cd13161120 cd13161, PTB_TK_HMTK, Tyrosine-specific kinase/HM- 5e-19
cd01273144 cd01273, PTB_CED-6, Cell death protein 6 homolog ( 4e-17
cd13159123 cd13159, PTB_LDLRAP-mammal-like, Low Density Lipop 1e-15
cd01274146 cd01274, PTB_Anks, Ankyrin repeat and sterile alph 7e-09
cd01215150 cd01215, PTB_Dab, Disabled (Dab) Phosphotyrosine-b 7e-08
cd01268135 cd01268, PTB_Numb, Numb Phosphotyrosine-binding (P 1e-07
cd0090088 cd00900, PH-like, Pleckstrin homology-like domain 1e-07
cd01212149 cd01212, PTB_JIP, JNK-interacting protein-like (JI 2e-05
cd13158135 cd13158, PTB_APPL, Adaptor protein containing PH d 5e-04
cd01270179 cd01270, PTB_CAPON-like, Carboxyl-terminal PDZ lig 7e-04
pfam1426159 pfam14261, DUF4351, Domain of unknown function (DU 0.004
>gnl|CDD|241298 cd01268, PTB_Numb, Numb Phosphotyrosine-binding (PTB) domain Back     alignment and domain information 
 Score =  258 bits (662), Expect = 5e-85
 Identities = 98/116 (84%), Positives = 111/116 (95%)

Query: 195 RYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTIE 254
           +YLGCVEV ESRGMQVCE+ALK L+ SR++PVRA+L+VSGDGLRVVD++TKGL+VDQTIE
Sbjct: 20  KYLGCVEVGESRGMQVCEEALKKLKASRKKPVRAVLWVSGDGLRVVDEKTKGLIVDQTIE 79

Query: 255 KVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLER 310
           KVSFCAPDRNHE+ FSYICRDGTTRRWMCH FLA+K+SGERLSHAVGCAFAACLER
Sbjct: 80  KVSFCAPDRNHERAFSYICRDGTTRRWMCHCFLAVKDSGERLSHAVGCAFAACLER 135

Numb is a membrane associated adaptor protein which plays critical roles in cell fate determination. Numb proteins are involved in control of asymmetric cell division and cell fate choice, endocytosis, cell adhesion, cell migration, ubiquitination of specific substrates and a number of signaling pathways (Notch, Hedgehog, p53). Mutations in Numb plays a critical role in disease (cancer). Numb has an N-terminal PTB domain and a C-terminal NumbF domain. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the Dab-like subgroup. Length = 135
>gnl|CDD|144292 pfam00640, PID, Phosphotyrosine interaction domain (PTB/PID) Back     alignment and domain information
>gnl|CDD|214675 smart00462, PTB, Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain Back     alignment and domain information
>gnl|CDD|241236 cd00934, PTB, Phosphotyrosine-binding (PTB) PH-like fold Back     alignment and domain information
>gnl|CDD|218982 pfam06311, NumbF, NUMB domain Back     alignment and domain information
>gnl|CDD|241315 cd13161, PTB_TK_HMTK, Tyrosine-specific kinase/HM-motif TK (TM/HMTK) Phosphotyrosine-binding (PTB) PH-like fold Back     alignment and domain information
>gnl|CDD|241303 cd01273, PTB_CED-6, Cell death protein 6 homolog (CED-6/GULP1) Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>gnl|CDD|241313 cd13159, PTB_LDLRAP-mammal-like, Low Density Lipoprotein Receptor Adaptor Protein 1 (LDLRAP1) in mammals and similar proteins Phosphotyrosine-binding (PTB) PH-like fold Back     alignment and domain information
>gnl|CDD|241304 cd01274, PTB_Anks, Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>gnl|CDD|241251 cd01215, PTB_Dab, Disabled (Dab) Phosphotyrosine-binding domain Back     alignment and domain information
>gnl|CDD|241298 cd01268, PTB_Numb, Numb Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>gnl|CDD|241235 cd00900, PH-like, Pleckstrin homology-like domain Back     alignment and domain information
>gnl|CDD|241248 cd01212, PTB_JIP, JNK-interacting protein-like (JIP) Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>gnl|CDD|241312 cd13158, PTB_APPL, Adaptor protein containing PH domain, PTB domain, and Leucine zipper motif (APPL; also called DCC-interacting protein (DIP)-13alpha) Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>gnl|CDD|241300 cd01270, PTB_CAPON-like, Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein (CAPON) Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>gnl|CDD|222633 pfam14261, DUF4351, Domain of unknown function (DUF4351) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 526
KOG3537|consensus 543 100.0
cd01268138 Numb Numb Phosphotyrosine-binding (PTB) domain. Nu 100.0
cd01274127 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) doma 99.97
cd01267132 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, 99.97
cd01273142 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain. 99.97
cd01270140 DYC-1 DYC-1 (DYB-1 binding and Capon related) Phos 99.97
cd01215139 Dab Disabled (Dab) Phosphotyrosine-binding domain. 99.96
cd01216123 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, ph 99.96
cd01212148 JIP JNK-interacting protein (JIP) Phosphotyrosine- 99.96
smart00462134 PTB Phosphotyrosine-binding domain, phosphotyrosin 99.95
PF00640140 PID: Phosphotyrosine interaction domain (PTB/PID) 99.95
cd00934123 PTB Phosphotyrosine-binding (PTB) domain. Phosphot 99.94
cd01208156 X11 X11 Phosphotyrosine-binding (PTB) domain. X11 99.93
cd01214133 CG8312 CG8312 Phosphotyrosine-binding (PTB) domain 99.93
PF0631188 NumbF: NUMB domain; InterPro: IPR010449 This entry 99.92
cd01209160 SHC SHC phosphotyrosine-binding (PTB) domain. SHC 99.91
cd01271124 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PT 99.91
PF14719182 PID_2: Phosphotyrosine interaction domain (PTB/PID 99.85
cd01211125 GAPCenA GAPCenA Phosphotyrosine-binding (PTB) doma 99.84
cd01272138 FE65_N Fe65 Phosphotyrosine-binding (PTB) domain. 99.83
KOG3536|consensus321 99.81
KOG3537|consensus 543 99.78
cd01269129 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) dom 99.76
cd01213138 tensin Tensin Phosphotyrosine-binding (PTB) domain 99.68
KOG3535|consensus 557 99.65
KOG3605|consensus829 99.55
PF08416131 PTB: Phosphotyrosine-binding domain; InterPro: IPR 99.54
KOG3775|consensus482 99.52
KOG1930|consensus483 99.18
KOG3697|consensus345 99.12
PF10480200 ICAP-1_inte_bdg: Beta-1 integrin binding protein; 98.79
cd01210127 EPS8 Epidermal growth factor receptor kinase subst 98.72
KOG4448|consensus374 98.62
cd01217158 CG12581 CG12581 Phosphotyrosine-binding (PTB) doma 98.42
cd01268138 Numb Numb Phosphotyrosine-binding (PTB) domain. Nu 98.07
KOG3557|consensus 721 97.55
cd01274127 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) doma 96.69
cd01215139 Dab Disabled (Dab) Phosphotyrosine-binding domain. 96.59
cd01212148 JIP JNK-interacting protein (JIP) Phosphotyrosine- 96.54
cd01267132 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, 96.54
cd01270140 DYC-1 DYC-1 (DYB-1 binding and Capon related) Phos 96.39
KOG0507|consensus854 96.39
cd01271124 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PT 96.35
cd0090099 PH-like Pleckstrin homology-like domain. Pleckstri 96.31
smart00462134 PTB Phosphotyrosine-binding domain, phosphotyrosin 96.23
cd01216123 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, ph 95.69
KOG0507|consensus854 95.23
cd00934123 PTB Phosphotyrosine-binding (PTB) domain. Phosphot 95.19
PF00640140 PID: Phosphotyrosine interaction domain (PTB/PID) 94.75
PF02174100 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 90.37
KOG3536|consensus321 87.51
cd01209160 SHC SHC phosphotyrosine-binding (PTB) domain. SHC 86.87
KOG4436|consensus 948 85.05
cd00824104 PTBI IRS-like phosphotyrosine-binding domain. IRS- 84.91
>KOG3537|consensus Back     alignment and domain information 
Probab=100.00  E-value=5.5e-83  Score=659.69  Aligned_cols=310  Identities=65%  Similarity=1.006  Sum_probs=268.7

Q ss_pred             CCccchhhhhhhhcccCCCCCCCCCCCccccchhhhcceeeEEEeeeeccccccCccceeeeecccCCCCcccccccchh
Q psy67            60 MSRPRRSFRDSFRRRKDQHMPESSKPHQWQSDEASVRAGTCYFHVKVCLGKVKQGEEHSVFMRFGYRPSGDVLHLSASAF  139 (526)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~c~f~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  139 (526)
                      |+||||    ||||||+.||||+|||||||+||++||.|||+|+||                                  
T Consensus         1 m~rlrr----S~rR~~~~~Vpe~SkphQWQ~DE~aVRtgtCsF~Vk----------------------------------   42 (543)
T KOG3537|consen    1 MNRLRR----SFRRRKKDYVPEASKPHQWQADEEAVRTGTCSFPVK----------------------------------   42 (543)
T ss_pred             Cchhhh----hHhhccCCCCCCCCCccccccchhhhccceeeeeee----------------------------------
Confidence            889997    557889999999999999999999999999999999                                  


Q ss_pred             cccceeeeeccccchhhHHHHhhheeEEEEEEEeeeEEeeccCchhhHHhhhhceEecceEecccCcChHHHHHHHHHHH
Q psy67           140 KYLGCVEVYESRGMQVCEDALKVVLIYMFALCYLGCVEVYESRGMQVCEDALKVLRYLGCVEVYESRGMQVCEDALKVLR  219 (526)
Q Consensus       140 ~~~g~~ev~es~g~~~c~~a~~~l~~~~FaVkYLGsvEV~e~rg~qVV~eAIrqLKYLGsVeV~e~rG~qV~eeAVkrIK  219 (526)
                       |||+|||+||+|||+||+                                                       |+|+||
T Consensus        43 -YLG~VEV~ESRGM~vCE~-------------------------------------------------------AlK~Lk   66 (543)
T KOG3537|consen   43 -YLGHVEVFESRGMQVCED-------------------------------------------------------ALKVLK   66 (543)
T ss_pred             -eeeeEEEecccCcHHHHH-------------------------------------------------------HHHHHH
Confidence             999999999999999994                                                       455567


Q ss_pred             hcCCCCcEEEEEEECCeEEEEECCCCceeeeeecceeEEEeeCCCCCceEEEEEecCCcCeeeEEEEEecCccHHHHHHH
Q psy67           220 NSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHA  299 (526)
Q Consensus       220 asgKK~qKV~L~VS~dGIrVVD~kTKelL~s~pI~rISFCA~D~~d~KvFAFIARd~st~rf~CHVF~C~K~kAq~Ia~A  299 (526)
                      ++++|+.|..|+||.|||+|+|.+|+.+|.++.|++||||+.|+++++-|+|||||+.+.+|+||.|+..|+.+++++|+
T Consensus        67 as~rk~VkavL~VS~DGLRVVD~~tk~LiVDQTIEKVSFCAPDRn~Dr~FsYICRDGttRRW~CH~FlA~KdsGERLSHA  146 (543)
T KOG3537|consen   67 ASRRKPVKAVLWVSGDGLRVVDDKTKGLIVDQTIEKVSFCAPDRNHDRGFSYICRDGTTRRWMCHGFLACKDSGERLSHA  146 (543)
T ss_pred             HhccCcceeEEEEccCceEEeccCccceeeeeeeeeeeccccccccccceeEEeecCCcceeeeeeeeeecchhhHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhcccccccCCCCCCccCcccccCCccccccccCCC---------CCC---CCCCCCCCCCCCC
Q psy67           300 VGCAFAACLERKQKRDKECGVTMNFDTTNSTFTRSGSFRQPTLTDRIIDGEV---------DMP---VSPLSPPPNSVPT  367 (526)
Q Consensus       300 IGQAFkVAfErKqKRekec~~~~~~~~~~~~~~r~~S~r~~~~t~~l~d~~~---------~~~---~~~~~~~~~~~~~  367 (526)
                      ||+||++|+|+|++|+||||+++.||+++++|+|+|||+.+..++.-...+.         ...   ..+....+++.++
T Consensus       147 VGCAFa~CLErKqRRdkEcGvt~~fda~~stftr~gSfr~~t~~~~~ere~~~~~~~~a~s~~t~k~~~~~~~~pg~~~~  226 (543)
T KOG3537|consen  147 VGCAFAACLERKQRRDKECGVTATFDASRSTFTREGSFRLQTGTEDAEREATATQGTNASSADTAKTVGRRLAMPGPTAP  226 (543)
T ss_pred             HHHHHHHHHHHHhhhhhhccceeeeeccccccccCCceeeccCCcchhhccccccccccccccccccccccccCCCCCCC
Confidence            9999999999999999999999999999999999999999777633211110         000   1111122333222


Q ss_pred             CC-----------CCCCCCCCCccCCCCCChhhhhhcCCccCCcCCcc-CCCcccccccccCCCCchhhhhhccccCccc
Q psy67           368 TP-----------GSVKPPNPHAIERPHAPIPLLQRQGSFRGFSQLNQ-ASPFKRQLSLRIGDLPSNLERTRLQQLSLTQ  435 (526)
Q Consensus       368 tp-----------~~~~~~~~~aipR~~a~~~~l~RQgS~r~f~~~~~-~spFkrqlSlR~~~lp~~~~r~~~~~~~~~~  435 (526)
                      +|           +..++.+++|||||||+++||+|||||||||+++| ++|||||||||+|+|||++||++||+++||+
T Consensus       227 ~P~s~~~~~~~as~tl~~~~~~aipR~ha~~~~l~RQGSfRg~p~l~~k~sPFKRqlSLR~n~lps~~qR~~~f~s~gt~  306 (543)
T KOG3537|consen  227 DPSSPIHKEDDASATLKPFNPFAIPRPHAPPEQLERQGSFRGFPALSQKQSPFKRQLSLRINELPSTTQRSTDFPSFGTQ  306 (543)
T ss_pred             CCCcccccCccccchhcccccccccCCCCCHHHhhccccccCCcccccccChhhhhhhhhhccCCchhhccccccccccc
Confidence            22           24567999999999999999999999999999999 9999999999999999999999999999997


Q ss_pred             ccCCCCCCCcccCCCCCCCCCCCCCCCCCCCCcc
Q psy67           436 ANHANNIAPLIYLKTPVSPIPESISPLKSNGDPG  469 (526)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (526)
                      .     .-.++|....+|++.+ |+|+.+.+-+|
T Consensus       307 ~-----~~Ep~~~Gdsdsl~a~-itp~~~a~asp  334 (543)
T KOG3537|consen  307 L-----YMEPIYEGDSDSLGAG-ITPPVSAKASP  334 (543)
T ss_pred             C-----cccCCCCCccCCcccc-ccCccccccCc
Confidence            3     3345566777887777 88887776665

>cd01268 Numb Numb Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain Back     alignment and domain information
>cd01273 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>cd01270 DYC-1 DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain Back     alignment and domain information
>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain Back     alignment and domain information
>cd01212 JIP JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain Back     alignment and domain information
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains Back     alignment and domain information
>cd00934 PTB Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>cd01208 X11 X11 Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>cd01214 CG8312 CG8312 Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>PF06311 NumbF: NUMB domain; InterPro: IPR010449 This entry represents a domain found in the cell-fate determinant Numb, and in related proteins Back     alignment and domain information
>cd01209 SHC SHC phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>cd01271 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>PF14719 PID_2: Phosphotyrosine interaction domain (PTB/PID) Back     alignment and domain information
>cd01211 GAPCenA GAPCenA Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>cd01272 FE65_N Fe65 Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>KOG3536|consensus Back     alignment and domain information
>KOG3537|consensus Back     alignment and domain information
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>cd01213 tensin Tensin Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>KOG3535|consensus Back     alignment and domain information
>KOG3605|consensus Back     alignment and domain information
>PF08416 PTB: Phosphotyrosine-binding domain; InterPro: IPR013625 The phosphotyrosine-binding domain (PTB, also phosphotyrosine-interaction or PI domain) of tensin tends to be found at the C terminus of a protein Back     alignment and domain information
>KOG3775|consensus Back     alignment and domain information
>KOG1930|consensus Back     alignment and domain information
>KOG3697|consensus Back     alignment and domain information
>PF10480 ICAP-1_inte_bdg: Beta-1 integrin binding protein; InterPro: IPR019517 ICAP-1 is a serine/threonine-rich protein that binds to the cytoplasmic domains of beta-1 integrins in a highly specific manner, binding to a NPXY sequence motif on the beta-1 integrin Back     alignment and domain information
>cd01210 EPS8 Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>KOG4448|consensus Back     alignment and domain information
>cd01217 CG12581 CG12581 Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>cd01268 Numb Numb Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>KOG3557|consensus Back     alignment and domain information
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain Back     alignment and domain information
>cd01212 JIP JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain Back     alignment and domain information
>cd01270 DYC-1 DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>KOG0507|consensus Back     alignment and domain information
>cd01271 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>cd00900 PH-like Pleckstrin homology-like domain Back     alignment and domain information
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain Back     alignment and domain information
>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain Back     alignment and domain information
>KOG0507|consensus Back     alignment and domain information
>cd00934 PTB Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains Back     alignment and domain information
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain Back     alignment and domain information
>KOG3536|consensus Back     alignment and domain information
>cd01209 SHC SHC phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>KOG4436|consensus Back     alignment and domain information
>cd00824 PTBI IRS-like phosphotyrosine-binding domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query526
2nmb_A160 Dnumb Ptb Domain Complexed With A Phosphotyrosine P 3e-61
2nmb_A160 Dnumb Ptb Domain Complexed With A Phosphotyrosine P 1e-05
1ddm_A135 Solution Structure Of The Numb Ptb Domain Complexed 4e-59
3f0w_A168 Human Numb-Like Protein, Phosphotyrosine Interactio 3e-52
3f0w_A168 Human Numb-Like Protein, Phosphotyrosine Interactio 6e-07
1wj1_A156 Solution Structure Of Phosphotyrosine Interaction D 1e-49
1wj1_A156 Solution Structure Of Phosphotyrosine Interaction D 2e-06
3so6_A137 Crystal Structure Of The Ldl Receptor Tail In Compl 1e-07
2m38_A153 Ptb Domain Of Aida1 Length = 153 2e-05
1oqn_A159 Crystal Structure Of The Phosphotyrosine Binding Do 5e-05
1ntv_A152 Crystal Structure Of The Disabled-1 (Dab1) Ptb Doma 1e-04
>pdb|2NMB|A Chain A, Dnumb Ptb Domain Complexed With A Phosphotyrosine Peptide, Nmr, Ensemble Of Structures Length = 160 Back     alignment and structure 
Iteration: 1

 Score =  233 bits (593), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 107/123 (86%), Positives = 118/123 (95%)
Query: 194 LRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTI 253
           ++YLGCVEV+ESRGMQVCE+ALKVLR SRRRPVR +L+VSGDGLRVVDDETKGL+VDQTI
Sbjct: 34  VKYLGCVEVFESRGMQVCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVDQTI 93
Query: 254 EKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLERKQK 313
           EKVSFCAPDRNHE+GFSYICRDGTTRRWMCHGFLA K+SGERLSHAVGCAFA CLERKQ+
Sbjct: 94  EKVSFCAPDRNHERGFSYICRDGTTRRWMCHGFLACKDSGERLSHAVGCAFAVCLERKQR 153
Query: 314 RDK 316
           R +
Sbjct: 154 RTR 156
>pdb|2NMB|A Chain A, Dnumb Ptb Domain Complexed With A Phosphotyrosine Peptide, Nmr, Ensemble Of Structures Length = 160 Back     alignment and structure
>pdb|1DDM|A Chain A, Solution Structure Of The Numb Ptb Domain Complexed To A Nak Peptide Length = 135 Back     alignment and structure
>pdb|3F0W|A Chain A, Human Numb-Like Protein, Phosphotyrosine Interaction Domain Length = 168 Back     alignment and structure
>pdb|3F0W|A Chain A, Human Numb-Like Protein, Phosphotyrosine Interaction Domain Length = 168 Back     alignment and structure
>pdb|1WJ1|A Chain A, Solution Structure Of Phosphotyrosine Interaction Domain Of Mouse Numb Protein Length = 156 Back     alignment and structure
>pdb|1WJ1|A Chain A, Solution Structure Of Phosphotyrosine Interaction Domain Of Mouse Numb Protein Length = 156 Back     alignment and structure
>pdb|3SO6|A Chain A, Crystal Structure Of The Ldl Receptor Tail In Complex With Autosomal Recessive Hypercholesterolemia Ptb Domain Length = 137 Back     alignment and structure
>pdb|2M38|A Chain A, Ptb Domain Of Aida1 Length = 153 Back     alignment and structure
>pdb|1OQN|A Chain A, Crystal Structure Of The Phosphotyrosine Binding Domain (Ptb) Of Mouse Disabled 1 (Dab1) Length = 159 Back     alignment and structure
>pdb|1NTV|A Chain A, Crystal Structure Of The Disabled-1 (Dab1) Ptb Domain- Apoer2 Peptide Complex Length = 152 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query526
3f0w_A168 NUMB-R, NUMB-like protein; PH domain-like, PID dom 3e-43
3so6_A137 LDL receptor adaptor protein; PTB, endocytic adapt 5e-35
2ela_A175 Adapter protein containing PH domain, PTB domain a 1e-32
1p3r_A160 Disabled homolog 2; PTB, signaling protein; 2.10A 4e-32
1ntv_A152 Disabled homolog 1; beta-sandwich, signaling prote 6e-32
3dxe_A140 Amyloid beta A4 protein-binding family B member 1; 4e-31
2ej8_A160 DCC-interacting protein 13 alpha; structural genom 3e-30
3d8d_A148 Amyloid beta A4 precursor protein-binding family 1 8e-27
1wgu_A136 APBB2, amyloid beta (A4) precursor protein-bindin, 9e-27
2dyq_A144 Amyloid beta A4 precursor protein-binding family 3 1e-26
2yt0_A176 Amyloid beta A4 protein and amyloid beta A4 precur 5e-26
2ysz_A185 Amyloid beta A4 precursor protein-binding family B 9e-25
4dbb_A162 Amyloid beta A4 precursor protein-binding family 1 2e-24
1n3h_A207 SHC transforming protein; free protein, beta sandw 2e-23
1aqc_A172 X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1 3e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
3hqc_A157 Tensin-like C1 domain-containing phosphatase; TENC 5e-04
1wvh_A134 Tensin, tensin1; beta sandwich, cell adhesion; 1.5 8e-04
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain, phosphoprotein, signaling protei structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A Length = 168 Back     alignment and structure
 Score =  150 bits (380), Expect = 3e-43
 Identities = 95/123 (77%), Positives = 110/123 (89%)

Query: 194 LRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTI 253
           +RYLG VEV ESRGM VCEDA+K L+   R+ V+++L+VS DGLRVVDD+TK L+VDQTI
Sbjct: 46  VRYLGHVEVEESRGMHVCEDAVKKLKAMGRKSVKSVLWVSADGLRVVDDKTKDLLVDQTI 105

Query: 254 EKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLERKQK 313
           EKVSFCAPDRN +K FSYICRDGTTRRW+CH FLALK+SGERLSHAVGCAFAACLERKQ+
Sbjct: 106 EKVSFCAPDRNLDKAFSYICRDGTTRRWICHCFLALKDSGERLSHAVGCAFAACLERKQR 165

Query: 314 RDK 316
           R+K
Sbjct: 166 REK 168
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal reces hypercholesterolemia, ARH, cholesterol; 1.37A {Rattus norvegicus} Length = 137 Back     alignment and structure
>2ela_A Adapter protein containing PH domain, PTB domain and leucine zipper motif 1; APPL, cell cycle; 2.00A {Homo sapiens} Length = 175 Back     alignment and structure
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus} SCOP: b.55.1.2 PDB: 1m7e_A Length = 160 Back     alignment and structure
>1ntv_A Disabled homolog 1; beta-sandwich, signaling protein; 1.50A {Mus musculus} SCOP: b.55.1.2 PDB: 1nu2_A* 1oqn_A* Length = 152 Back     alignment and structure
>3dxe_A Amyloid beta A4 protein-binding family B member 1; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} PDB: 3dxd_A 3dxc_A Length = 140 Back     alignment and structure
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.84A {Homo sapiens} Length = 160 Back     alignment and structure
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta structure, phosphotyrosine binding domain; 2.20A {Homo sapiens} PDB: 3d8e_A 3d8f_A Length = 148 Back     alignment and structure
>1wgu_A APBB2, amyloid beta (A4) precursor protein-bindin, family B, member 2; phosphotyrosine-interaction domain, amyloid disease, structural genomics; NMR {Mus musculus} SCOP: b.55.1.2 PDB: 2roz_B Length = 136 Back     alignment and structure
>2dyq_A Amyloid beta A4 precursor protein-binding family 3; phosphotyrosine-interaction domain (PTB/PID alzheimer'S disease, structural genomics, NPPSFA; 3.10A {Homo sapiens} Length = 144 Back     alignment and structure
>2yt0_A Amyloid beta A4 protein and amyloid beta A4 precursor protein-binding family B member...; chimera, Fe65L, PID domain, amyloid precursor protein; NMR {Mus musculus} PDB: 2yt1_A Length = 176 Back     alignment and structure
>2ysz_A Amyloid beta A4 precursor protein-binding family B member 2 and amyloid beta A4 protein...; chimera, Fe65L, PID domain, amyloid precursor protein; NMR {Mus musculus} Length = 185 Back     alignment and structure
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints, PTB domain, chimera protein, protein transport; HET: IPA GOL; 1.90A {Rattus norvegicus} Length = 162 Back     alignment and structure
>1n3h_A SHC transforming protein; free protein, beta sandwich, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.2 PDB: 1oy2_A 2l1c_A* 1shc_A* Length = 207 Back     alignment and structure
>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A* Length = 172 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3hqc_A Tensin-like C1 domain-containing phosphatase; TENC1, phosphotyrosine binding domain, PTB, TNS2, KIAA1075, struct genomics, PSI-2; 1.80A {Homo sapiens} PDB: 2dkq_A Length = 157 Back     alignment and structure
>1wvh_A Tensin, tensin1; beta sandwich, cell adhesion; 1.50A {Gallus gallus} SCOP: b.55.1.2 PDB: 2gjy_A Length = 134 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query526
3f0w_A168 NUMB-R, NUMB-like protein; PH domain-like, PID dom 100.0
2ej8_A160 DCC-interacting protein 13 alpha; structural genom 99.97
3so6_A137 LDL receptor adaptor protein; PTB, endocytic adapt 99.97
2ela_A175 Adapter protein containing PH domain, PTB domain a 99.97
1ntv_A152 Disabled homolog 1; beta-sandwich, signaling prote 99.96
1p3r_A160 Disabled homolog 2; PTB, signaling protein; 2.10A 99.96
4dbb_A162 Amyloid beta A4 precursor protein-binding family 1 99.96
3dxe_A140 Amyloid beta A4 protein-binding family B member 1; 99.95
1aqc_A172 X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1 99.95
1wgu_A136 APBB2, amyloid beta (A4) precursor protein-bindin, 99.94
2ysz_A185 Amyloid beta A4 precursor protein-binding family B 99.94
1n3h_A207 SHC transforming protein; free protein, beta sandw 99.94
2dyq_A144 Amyloid beta A4 precursor protein-binding family 3 99.92
3d8d_A148 Amyloid beta A4 precursor protein-binding family 1 99.91
2yt0_A176 Amyloid beta A4 protein and amyloid beta A4 precur 99.9
3suz_A388 Amyloid beta A4 precursor protein-binding family 2 99.89
1wvh_A134 Tensin, tensin1; beta sandwich, cell adhesion; 1.5 99.81
3hqc_A157 Tensin-like C1 domain-containing phosphatase; TENC 99.76
4dx8_A154 Integrin beta-1-binding protein 1; protein-protien 99.1
2cy5_A140 Epidermal growth factor receptor pathway substrate 99.01
2ej8_A160 DCC-interacting protein 13 alpha; structural genom 97.41
2ela_A175 Adapter protein containing PH domain, PTB domain a 97.31
3d8d_A148 Amyloid beta A4 precursor protein-binding family 1 96.57
1ntv_A152 Disabled homolog 1; beta-sandwich, signaling prote 96.55
3dxe_A140 Amyloid beta A4 protein-binding family B member 1; 96.42
3so6_A137 LDL receptor adaptor protein; PTB, endocytic adapt 96.14
2dyq_A144 Amyloid beta A4 precursor protein-binding family 3 96.04
1p3r_A160 Disabled homolog 2; PTB, signaling protein; 2.10A 96.03
1wgu_A136 APBB2, amyloid beta (A4) precursor protein-bindin, 95.82
2ysz_A185 Amyloid beta A4 precursor protein-binding family B 95.64
3f0w_A168 NUMB-R, NUMB-like protein; PH domain-like, PID dom 94.26
4dbb_A162 Amyloid beta A4 precursor protein-binding family 1 94.04
4f7g_A222 Talin-1; alpha-helix bundle, integrin activation, 91.94
1wvh_A134 Tensin, tensin1; beta sandwich, cell adhesion; 1.5 91.5
4dxa_B322 KREV interaction trapped protein 1; GTPase, FERM, 91.07
1mix_A206 Talin; focal adhesion, integrin binding, FERM doma 90.06
1aqc_A172 X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1 86.95
3hqc_A157 Tensin-like C1 domain-containing phosphatase; TENC 83.14
3ivf_A371 Talin-1; FERM domain, cell membrane, cell projecti 82.61
3au4_A555 Myosin-X; protein-protein complex, motor protein c 81.05
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain, phosphoprotein, signaling protei structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A Back     alignment and structure
Probab=100.00  E-value=1.2e-35  Score=274.50  Aligned_cols=120  Identities=78%  Similarity=1.275  Sum_probs=109.7

Q ss_pred             cceEecccCcChHHHHHHHHHHHhcCCCCcEEEEEEECCeEEEEECCCCceeeeeecceeEEEeeCCCCCceEEEEEecC
Q psy67           197 LGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTIEKVSFCAPDRNHEKGFSYICRDG  276 (526)
Q Consensus       197 LGsVeV~e~rG~qV~eeAVkrIKasgKK~qKV~L~VS~dGIrVVD~kTKelL~s~pI~rISFCA~D~~d~KvFAFIARd~  276 (526)
                      ||+++|..++|++++++||++|++.++++++|.|.||.+||+|+|.++++++++|+|++||||+.|+.+.++||||++++
T Consensus        49 LGs~~V~~~~g~~~~~~Ai~~lk~~~~k~~~V~L~VS~~GI~l~d~~t~~~l~~~~i~~ISf~~~d~~~~~~FafIar~~  128 (168)
T 3f0w_A           49 LGHVEVEESRGMHVCEDAVKKLKAMGRKSVKSVLWVSADGLRVVDDKTKDLLVDQTIEKVSFCAPDRNLDKAFSYICRDG  128 (168)
T ss_dssp             EEEEEESCSCCHHHHHHHHHHHHTTC--CEEEEEEECSSEEEEEETTTCCEEEEEEGGGEEEEEECSSCTTEEEEEEEET
T ss_pred             eeEEEECCCCCHHHHHHHHHHHHhcCCCCcEEEEEEECCEEEEEeCCCCeEEEeeecCcEEEEecCCCCCcEEEEEEecC
Confidence            66666777889999999999999888889999999999999999999999999999999999999999999999999999


Q ss_pred             CcCeeeEEEEEecCccHHHHHHHHHHHHHHHHHHhhhhhh
Q psy67           277 TTRRWMCHGFLALKESGERLSHAVGCAFAACLERKQKRDK  316 (526)
Q Consensus       277 st~rf~CHVF~C~K~kAq~Ia~AIGQAFkVAfErKqKRek  316 (526)
                      .+.++.||||.|.+++|+.|+.+||+||++||++||||+|
T Consensus       129 ~~~~~~CHvF~c~~~~A~~I~~aIgqAF~~a~~~kqk~~~  168 (168)
T 3f0w_A          129 TTRRWICHCFLALKDSGERLSHAVGCAFAACLERKQRREK  168 (168)
T ss_dssp             TTTEEEEEEEEESSSCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCCcEEEEEEEeccchHHHHHHHHHHHHHHHHHHhhhccC
Confidence            8899999999998767999999999999999999999986
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.84A {Homo sapiens} Back     alignment and structure
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal reces hypercholesterolemia, ARH, cholesterol; 1.37A {Rattus norvegicus} Back     alignment and structure
>2ela_A Adapter protein containing PH domain, PTB domain and leucine zipper motif 1; APPL, cell cycle; 2.00A {Homo sapiens} Back     alignment and structure
>1ntv_A Disabled homolog 1; beta-sandwich, signaling protein; 1.50A {Mus musculus} SCOP: b.55.1.2 PDB: 1nu2_A* 1oqn_A* Back     alignment and structure
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus} SCOP: b.55.1.2 PDB: 1m7e_A Back     alignment and structure
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints, PTB domain, chimera protein, protein transport; HET: IPA GOL; 1.90A {Rattus norvegicus} Back     alignment and structure
>3dxe_A Amyloid beta A4 protein-binding family B member 1; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} SCOP: b.55.1.0 PDB: 3dxd_A 3dxc_A Back     alignment and structure
>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A* Back     alignment and structure
>1wgu_A APBB2, amyloid beta (A4) precursor protein-bindin, family B, member 2; phosphotyrosine-interaction domain, amyloid disease, structural genomics; NMR {Mus musculus} SCOP: b.55.1.2 PDB: 2roz_B Back     alignment and structure
>2ysz_A Amyloid beta A4 precursor protein-binding family B member 2 and amyloid beta A4 protein...; chimera, Fe65L, PID domain, amyloid precursor protein; NMR {Mus musculus} Back     alignment and structure
>1n3h_A SHC transforming protein; free protein, beta sandwich, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.2 PDB: 1oy2_A 2l1c_A* 1shc_A* Back     alignment and structure
>2dyq_A Amyloid beta A4 precursor protein-binding family 3; phosphotyrosine-interaction domain (PTB/PID alzheimer'S disease, structural genomics, NPPSFA; 3.10A {Homo sapiens} Back     alignment and structure
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta structure, phosphotyrosine binding domain; 2.20A {Homo sapiens} PDB: 3d8e_A 3d8f_A Back     alignment and structure
>2yt0_A Amyloid beta A4 protein and amyloid beta A4 precursor protein-binding family B member...; chimera, Fe65L, PID domain, amyloid precursor protein; NMR {Mus musculus} PDB: 2yt1_A Back     alignment and structure
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Back     alignment and structure
>1wvh_A Tensin, tensin1; beta sandwich, cell adhesion; 1.50A {Gallus gallus} SCOP: b.55.1.2 PDB: 2gjy_A Back     alignment and structure
>3hqc_A Tensin-like C1 domain-containing phosphatase; TENC1, phosphotyrosine binding domain, PTB, TNS2, KIAA1075, struct genomics, PSI-2; 1.80A {Homo sapiens} SCOP: b.55.1.2 PDB: 2loz_A 2dkq_A Back     alignment and structure
>4dx8_A Integrin beta-1-binding protein 1; protein-protien complex, PTB domain, nudix fold, protein-Pro interaction, membrane, nucleus, protein binding; 2.54A {Homo sapiens} PDB: 4dx9_A Back     alignment and structure
>2cy5_A Epidermal growth factor receptor pathway substrate 8-like protein 1; structural genomics, signal transduction, phosphorylation, PTB domain, NPPSFA; 1.90A {Mus musculus} SCOP: b.55.1.2 PDB: 2cy4_A Back     alignment and structure
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.84A {Homo sapiens} Back     alignment and structure
>2ela_A Adapter protein containing PH domain, PTB domain and leucine zipper motif 1; APPL, cell cycle; 2.00A {Homo sapiens} Back     alignment and structure
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta structure, phosphotyrosine binding domain; 2.20A {Homo sapiens} PDB: 3d8e_A 3d8f_A Back     alignment and structure
>1ntv_A Disabled homolog 1; beta-sandwich, signaling protein; 1.50A {Mus musculus} SCOP: b.55.1.2 PDB: 1nu2_A* 1oqn_A* Back     alignment and structure
>3dxe_A Amyloid beta A4 protein-binding family B member 1; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} SCOP: b.55.1.0 PDB: 3dxd_A 3dxc_A Back     alignment and structure
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal reces hypercholesterolemia, ARH, cholesterol; 1.37A {Rattus norvegicus} Back     alignment and structure
>2dyq_A Amyloid beta A4 precursor protein-binding family 3; phosphotyrosine-interaction domain (PTB/PID alzheimer'S disease, structural genomics, NPPSFA; 3.10A {Homo sapiens} Back     alignment and structure
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus} SCOP: b.55.1.2 PDB: 1m7e_A Back     alignment and structure
>1wgu_A APBB2, amyloid beta (A4) precursor protein-bindin, family B, member 2; phosphotyrosine-interaction domain, amyloid disease, structural genomics; NMR {Mus musculus} SCOP: b.55.1.2 PDB: 2roz_B Back     alignment and structure
>2ysz_A Amyloid beta A4 precursor protein-binding family B member 2 and amyloid beta A4 protein...; chimera, Fe65L, PID domain, amyloid precursor protein; NMR {Mus musculus} Back     alignment and structure
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain, phosphoprotein, signaling protei structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A Back     alignment and structure
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints, PTB domain, chimera protein, protein transport; HET: IPA GOL; 1.90A {Rattus norvegicus} Back     alignment and structure
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} Back     alignment and structure
>1wvh_A Tensin, tensin1; beta sandwich, cell adhesion; 1.50A {Gallus gallus} SCOP: b.55.1.2 PDB: 2gjy_A Back     alignment and structure
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A Back     alignment and structure
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B Back     alignment and structure
>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A* Back     alignment and structure
>3hqc_A Tensin-like C1 domain-containing phosphatase; TENC1, phosphotyrosine binding domain, PTB, TNS2, KIAA1075, struct genomics, PSI-2; 1.80A {Homo sapiens} SCOP: b.55.1.2 PDB: 2loz_A 2dkq_A Back     alignment and structure
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Back     alignment and structure
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 526
d1wj1a_156 b.55.1.2 (A:) Numb {Mouse (Mus musculus) [TaxId: 1 3e-37
d1ddma_135 b.55.1.2 (A:) Numb {Fruit fly (Drosophila melanoga 1e-36
d1p3ra_148 b.55.1.2 (A:) Disabled homolog 2 (Dab2) {Mouse (Mu 3e-29
d1ntva_152 b.55.1.2 (A:) Disabled homolog 1 (Dab1) {Mouse (Mu 8e-27
d2cy5a1129 b.55.1.2 (A:31-159) EPS8-like protein 1, EPS8L1 {M 2e-26
d1oy2a_191 b.55.1.2 (A:) Shc adaptor protein {Human (Homo sap 1e-23
d1wgua_136 b.55.1.2 (A:) Amyloid beta A4 precursor protein-bi 1e-19
d2dkqa1147 b.55.1.2 (A:8-154) Tensin {Human (Homo sapiens) [T 3e-19
d1aqca_166 b.55.1.2 (A:) X11 {Human (Homo sapiens) [TaxId: 96 1e-17
d1wvha1133 b.55.1.2 (A:1606-1738) Tensin {Chicken (Gallus gal 2e-17
>d1wj1a_ b.55.1.2 (A:) Numb {Mouse (Mus musculus) [TaxId: 10090]} Length = 156 Back     information, alignment and structure

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Numb
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  132 bits (333), Expect = 3e-37
 Identities = 88/124 (70%), Positives = 109/124 (87%)

Query: 194 LRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSGDGLRVVDDETKGLMVDQTI 253
           ++YLG VEV ESRGM +CEDA+K L+ + ++ V+A+L+VS DGLRVVD++TK L+VDQTI
Sbjct: 30  VKYLGHVEVDESRGMHICEDAVKRLKATGKKAVKAVLWVSADGLRVVDEKTKDLIVDQTI 89

Query: 254 EKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLERKQK 313
           EKVSFCAPDRN ++ FSYICRDGTTRRW+CH F+A+K++GERLSHAVGCAFAACLERKQK
Sbjct: 90  EKVSFCAPDRNFDRAFSYICRDGTTRRWICHCFMAVKDTGERLSHAVGCAFAACLERKQK 149

Query: 314 RDKE 317
           R   
Sbjct: 150 RSGP 153
>d1ddma_ b.55.1.2 (A:) Numb {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 135 Back     information, alignment and structure
>d1p3ra_ b.55.1.2 (A:) Disabled homolog 2 (Dab2) {Mouse (Mus musculus) [TaxId: 10090]} Length = 148 Back     information, alignment and structure
>d1ntva_ b.55.1.2 (A:) Disabled homolog 1 (Dab1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 152 Back     information, alignment and structure
>d2cy5a1 b.55.1.2 (A:31-159) EPS8-like protein 1, EPS8L1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 129 Back     information, alignment and structure
>d1oy2a_ b.55.1.2 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]} Length = 191 Back     information, alignment and structure
>d1wgua_ b.55.1.2 (A:) Amyloid beta A4 precursor protein-binding family B member 2, Apbb2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 136 Back     information, alignment and structure
>d2dkqa1 b.55.1.2 (A:8-154) Tensin {Human (Homo sapiens) [TaxId: 9606]} Length = 147 Back     information, alignment and structure
>d1aqca_ b.55.1.2 (A:) X11 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 Back     information, alignment and structure
>d1wvha1 b.55.1.2 (A:1606-1738) Tensin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 133 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query526
d1wj1a_156 Numb {Mouse (Mus musculus) [TaxId: 10090]} 100.0
d1ddma_135 Numb {Fruit fly (Drosophila melanogaster) [TaxId: 99.98
d1ntva_152 Disabled homolog 1 (Dab1) {Mouse (Mus musculus) [T 99.96
d1p3ra_148 Disabled homolog 2 (Dab2) {Mouse (Mus musculus) [T 99.95
d1aqca_166 X11 {Human (Homo sapiens) [TaxId: 9606]} 99.95
d1oy2a_191 Shc adaptor protein {Human (Homo sapiens) [TaxId: 99.93
d2cy5a1129 EPS8-like protein 1, EPS8L1 {Mouse (Mus musculus) 99.93
d1wgua_136 Amyloid beta A4 precursor protein-binding family B 99.91
d2dkqa1147 Tensin {Human (Homo sapiens) [TaxId: 9606]} 99.88
d1wvha1133 Tensin {Chicken (Gallus gallus) [TaxId: 9031]} 99.87
d1p3ra_148 Disabled homolog 2 (Dab2) {Mouse (Mus musculus) [T 96.76
d1mixa292 Talin {Chicken (Gallus gallus) [TaxId: 9031]} 96.27
d1ntva_152 Disabled homolog 1 (Dab1) {Mouse (Mus musculus) [T 96.22
d2cy5a1129 EPS8-like protein 1, EPS8L1 {Mouse (Mus musculus) 95.8
d2dkqa1147 Tensin {Human (Homo sapiens) [TaxId: 9606]} 95.13
d1wgua_136 Amyloid beta A4 precursor protein-binding family B 95.09
d1wvha1133 Tensin {Chicken (Gallus gallus) [TaxId: 9031]} 94.9
d1j0wa_99 Downstream of tyrosine kinase 5, Dok-5 {Human (Hom 89.9
d1aqca_166 X11 {Human (Homo sapiens) [TaxId: 9606]} 88.85
>d1wj1a_ b.55.1.2 (A:) Numb {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Numb
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.5e-34  Score=257.15  Aligned_cols=148  Identities=70%  Similarity=1.221  Sum_probs=136.9

Q ss_pred             CCCCCCCCccccchhhhcceeeEEEeeeeccccccCccceeeeecccCCCCcccccccchhcccceeeeeccccchhhHH
Q psy67            79 MPESSKPHQWQSDEASVRAGTCYFHVKVCLGKVKQGEEHSVFMRFGYRPSGDVLHLSASAFKYLGCVEVYESRGMQVCED  158 (526)
Q Consensus        79 ~~~~~~~~~w~~~~~~~~~~~c~f~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ev~es~g~~~c~~  158 (526)
                      .-+.|.|++|..|++.|..|.|.|+||                                   |                 
T Consensus         5 ~~~~~~~~~w~~~~~~~~~~~~~f~v~-----------------------------------Y-----------------   32 (156)
T d1wj1a_           5 SSGASRPHQWQTDEEGVRTGKCSFPVK-----------------------------------Y-----------------   32 (156)
T ss_dssp             CCCCCCSCSSHHHHHHTTTTCCEEEEE-----------------------------------E-----------------
T ss_pred             CCCCCCCccCCCCHHHhccCCeeEEEE-----------------------------------E-----------------
Confidence            347789999999999999999999999                                   7                 


Q ss_pred             HHhhheeEEEEEEEeeeEEeeccCchhhHHhhhhceEecceEecccCcChHHHHHHHHHHHhcCCCCcEEEEEEECCeEE
Q psy67           159 ALKVVLIYMFALCYLGCVEVYESRGMQVCEDALKVLRYLGCVEVYESRGMQVCEDALKVLRNSRRRPVRAILYVSGDGLR  238 (526)
Q Consensus       159 a~~~l~~~~FaVkYLGsvEV~e~rg~qVV~eAIrqLKYLGsVeV~e~rG~qV~eeAVkrIKasgKK~qKV~L~VS~dGIr  238 (526)
                                                            ||+++|.+++|++++.+||++|++..+++++|.|.|+.+||+
T Consensus        33 --------------------------------------LGs~~v~~~~g~~~v~~ai~~l~~~~~k~~~V~L~Vs~~gi~   74 (156)
T d1wj1a_          33 --------------------------------------LGHVEVDESRGMHICEDAVKRLKATGKKAVKAVLWVSADGLR   74 (156)
T ss_dssp             --------------------------------------EEEEECSSSCCHHHHHHHHHHHHHHTCCCEEEEEEEETTEEE
T ss_pred             --------------------------------------EEEEEeCCCCCHHHHHHHHHHHHhcCCCCCeEEEEEecCccE
Confidence                                                  666667788899999999999999899999999999999999


Q ss_pred             EEECCCCceeeeeecceeEEEeeCCCCCceEEEEEecCCcCeeeEEEEEecCccHHHHHHHHHHHHHHHHHHhhhhhh
Q psy67           239 VVDDETKGLMVDQTIEKVSFCAPDRNHEKGFSYICRDGTTRRWMCHGFLALKESGERLSHAVGCAFAACLERKQKRDK  316 (526)
Q Consensus       239 VVD~kTKelL~s~pI~rISFCA~D~~d~KvFAFIARd~st~rf~CHVF~C~K~kAq~Ia~AIGQAFkVAfErKqKRek  316 (526)
                      |+|.++++++++|+|++||||+.|++++++|+||+++.....+.||||+|++..|++|+.+|++||++||+++++|.+
T Consensus        75 v~d~~~~~~l~~~~l~~ISfc~~d~~~~~~FafI~~~~~~~~~~CHVF~c~~~~A~~I~~ai~~AF~~a~~~~~~~~~  152 (156)
T d1wj1a_          75 VVDEKTKDLIVDQTIEKVSFCAPDRNFDRAFSYICRDGTTRRWICHCFMAVKDTGERLSHAVGCAFAACLERKQKRSG  152 (156)
T ss_dssp             EEETTTTEEEECCBTTTCCEEECCSSSSSEEEEEEECSSSSSEEEEEEEESSSCHHHHHHHHHHHHHHHHHHHSCCCS
T ss_pred             EEcCCCCceeeEEeccEEEEEEecCCCCeEEEEEEecCCCCcEEEEEEEeCcHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            999999999999999999999999999999999999998899999999998766999999999999999998776554
>d1ddma_ b.55.1.2 (A:) Numb {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ntva_ b.55.1.2 (A:) Disabled homolog 1 (Dab1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1p3ra_ b.55.1.2 (A:) Disabled homolog 2 (Dab2) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1aqca_ b.55.1.2 (A:) X11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oy2a_ b.55.1.2 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cy5a1 b.55.1.2 (A:31-159) EPS8-like protein 1, EPS8L1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgua_ b.55.1.2 (A:) Amyloid beta A4 precursor protein-binding family B member 2, Apbb2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dkqa1 b.55.1.2 (A:8-154) Tensin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wvha1 b.55.1.2 (A:1606-1738) Tensin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1p3ra_ b.55.1.2 (A:) Disabled homolog 2 (Dab2) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mixa2 b.55.1.5 (A:309-400) Talin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1ntva_ b.55.1.2 (A:) Disabled homolog 1 (Dab1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cy5a1 b.55.1.2 (A:31-159) EPS8-like protein 1, EPS8L1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dkqa1 b.55.1.2 (A:8-154) Tensin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgua_ b.55.1.2 (A:) Amyloid beta A4 precursor protein-binding family B member 2, Apbb2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wvha1 b.55.1.2 (A:1606-1738) Tensin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1j0wa_ b.55.1.2 (A:) Downstream of tyrosine kinase 5, Dok-5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aqca_ b.55.1.2 (A:) X11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure