Psyllid ID: psy6813

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------76
MSKHAKPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQINARIGEAKDVKLKSQEKSVFKSKSGTVKLQIKDGLAVDPDSGLADTTELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGTSIGGTKVQDFKDVESAFDEFDRCFEKETGNTSGKDAKQKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSKFIKDAANGKVLELIEKMNLAPWGSDDSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQKLLDVKYEDTSKSKKVKVEPMDIECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAYTIKQEGPSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFNYK
cccccccccHHHHcccccccccccHHHcccHHHHHHHHcccccccHHHHHcccccHHccccccccccEEEcccccccccccccccccEEEEEcccEEEEEEEEEEEccccccEEEEEEEEEEcccccEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHcccEEEEcccccHHHHHHHHHHHHHccccccccccEEcHHHHcccccccccccccccccccEEEEcccccccHHHHHHccccccccccccccccccEEEEEccccccccccccccccccEEEEEEEEEccccEEEEEEccccccccccccccccccccccccccccHHHHHHHccccccccHHHHHccccccccEEEccccccccccccEEEcccEEEcccccccccccccccccccccEEEEEccccEEEEEEEEEEEEEc
ccccccccEEEEEcccccccccccHHHHHHHHHHEHHHHHHHccccHHHccccccccccccccccEEEEEEccccEEcccccccccEEEEEEcccEEEEEEEEEEEcccccccEEEEEEEEccccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccccccHHcccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHcccHHcccccHHccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccEccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHcccccccccccccccccHHHHHHHHHHccHHHHHHHHHHccEccccccHHHccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccEEEEEcccccHHHHHHHHHHHHccccccccEEEEEEEEEEEEEccHHHHHHHHHHcccEEEEEEEEcHHHHHHHHHHccccccccccHHHccccccEEEEccHHHHHHHHccEccEcEEEEEEEEEEcccEHHHccccccEEEEccHHHHHHHHccEccEcEEEEEEEEEEcccEEEEccccccccccccccEEEEcEEEEEcHHHcEEEcccEEEccccccccccccccccEEEEcEEEEccHHHEEEEEEEEEEEEEc
mskhakpfecdyaksnrakckgckdtiIQGTLRLAVMVQINARigeakdvklksqeksvfksksgtVKLQikdglavdpdsgladtTELVKYFDDRYLNAVmgktdvaagknsFYKLQVLKSKIHKEKYYLFRAwgrigtsiggtkvqdfkdVESAFDEFDRcfeketgntsgkdaKQKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYgihvvpskfikdaANGKVLELIEKmnlapwgsddsakHLAQGYSILNEVISVLDrnaeadvkDRLILTLTNsfythiphsfgladpplldnkqLVVQKMEMIDAMTQKLLDVKyedtskskkvkvepmdiecslEKPVAALVELLFDEKAMTATLKEYEldmdrmplgklSAKHLAQGYSILNEVISVLDrnaeadvkDRLILTLTNsfythiphsfgladpplldnkqLVVQKMEMIDAMTQIELAYTIkqegpsagvhplVNCYEKLQANIksvdtshphyEIIHKYVQNthakthreySLNIEAIFEVsrhgedkrfkpfeklgnkhllwhgsrltNFASIISkglciappeapvtgymfgkgiyfadsvsksanycmtnstnNVGLLLLCEVALGKVVLRYMFGKgiyfadsvsksanycmtnstnNVGLLLLCEVALGKVVKKTQAEFVTklpngfhsvqgqgrncpdpkgsivldnnitvplgtlidlprdqaKNLSLLYNEFIVYDPAQVKIRYILKVRFNYK
mskhakpfecdyaksnrakckgckDTIIQGTLRLAVMVQINARigeakdvklksqeksvfksksgtvklqikdglavdpdsglaDTTELVKYFDDRYLNAVMGktdvaagknSFYKLQVLKSKIHKEKYYLFRAWGrigtsiggtkvqdfKDVESAFDEFDRCFeketgntsgkdakqKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGihvvpskfikDAANGKVLELIEKMNLAPWGSDDSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPhsfgladpplLDNKQLVVQKMEMIDAMTQKLldvkyedtskskkvkvepmdiecslEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPhsfgladpplLDNKQLVVQKMEMIDAMTQIELAYTIKQEGPSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKlpngfhsvqgqgrNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEfivydpaqvkIRYILKVRFNYK
MSKHAKPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQINARIGEAKDVKLKSQEKSVFKSKSGTVKLQIKDGLAVDPDSGLADTTELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGTSIGGTKVQDFKDVESAFDEFDRCFEKETGNTSGKDAKQKLTASILRLGGDTVSDVRSHVaaaiatkaaVENMEEGGKGARAMEELKEYGIHVVPSKFIKDAANGKVLELIEKMNLAPWGSDDSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQKLLDVKYEDTSKSKKVKVEPMDIECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAYTIKQEGPSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFNYK
**********DYAKSNRAKCKGCKDTIIQGTLRLAVMVQINARIGEAK******************VKLQIKDGLAVDPDSGLADTTELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGTSIGGTKVQDFKDVESAFDEFDRCF*****************ASILRLGGDTVSDVRSHVAAAIATKA****************ELKEYGIHVVPSKFIKDAANGKVLELIEKMNLAPWGSDDSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQKLLDVKY************PMDIECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAYTIKQEGPSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFN**
*****KP******************************************************************GLAVDPDSGLADTTELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGTSIGG**VQDFKDVESAFDEFDRCFEKETGNTSGKDAKQKLTASILRLGGDTVSDVRS***************************LKEYGIHVVPSKFIKDAANGKVLELIEKMNLAPWGSDDSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQKLLDVKYEDTSKSKKVKVEPMDIECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDR*****VKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAYTI*******GVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVSRHG*D******EKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKV***************FHSVQGQGRNCPDPKGSIVLDNNITVPLGTLI*******KNLSLLYNEFIVYDPAQVKIRYILKVRFNYK
MSKHAKPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQINARIGEAKDVKLKSQEKSVFKSKSGTVKLQIKDGLAVDPDSGLADTTELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGTSIGGTKVQDFKDVESAFDEFDRCFEKETGNTSGKDAKQKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSKFIKDAANGKVLELIEKMNLAPWGSDDSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQKLLDVKYEDTSKSKKVKVEPMDIECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAYTIKQEGPSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFNYK
*****KPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQINARI*******************SGTVKLQIKDGLAVDPDSGLADTTELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGTSIGGTKVQDFKDVESAFDEFDRCFEKETGNTSGKDAKQKLTASILRLGGDTVSD***************************MEELKEYGIHVVPSKFIKDAANGKVLELIEKMNLAPWGSDDSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQKLLDVKYEDTSK******EPMDIECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAYTIKQEGPSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFNYK
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MSKHAKPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQINARIGEAKDVKLKSQEKSVFKSKSGTVKLQIKDGLAVDPDSGLADTTELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGTSIGGTKVQDFKDVESAFDEFDRCFEKETGNTSGKDAKQKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSKFIKDAANGKVLELIEKMNLAPWGSDDSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQKLLDVKYEDTSKSKKVKVEPMDIECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAYTIKQEGPSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFNYK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query758 2.2.26 [Sep-21-2011]
P270081014 Poly [ADP-ribose] polymer yes N/A 0.485 0.362 0.446 3e-94
P098741014 Poly [ADP-ribose] polymer yes N/A 0.485 0.362 0.446 3e-94
P184931016 Poly [ADP-ribose] polymer yes N/A 0.485 0.362 0.444 9e-94
P111031013 Poly [ADP-ribose] polymer yes N/A 0.485 0.363 0.442 2e-93
Q9R1521013 Poly [ADP-ribose] polymer yes N/A 0.485 0.363 0.444 3e-93
Q11208996 Poly [ADP-ribose] polymer N/A N/A 0.463 0.352 0.444 1e-92
P35875994 Poly [ADP-ribose] polymer yes N/A 0.484 0.369 0.420 9e-89
P264461011 Poly [ADP-ribose] polymer yes N/A 0.453 0.340 0.451 6e-88
P31669998 Poly [ADP-ribose] polymer N/A N/A 0.455 0.345 0.439 3e-87
Q5Z8Q9660 Poly [ADP-ribose] polymer yes N/A 0.488 0.560 0.377 7e-74
>sp|P27008|PARP1_RAT Poly [ADP-ribose] polymerase 1 OS=Rattus norvegicus GN=Parp1 PE=1 SV=4 Back     alignment and function desciption
 Score =  346 bits (888), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 189/423 (44%), Positives = 257/423 (60%), Gaps = 55/423 (13%)

Query: 338  LDVKY-EDTSKSKKVKVEPMDIECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLG 396
            L++ Y +D    KK+ V+P   +  L KPV  LV ++FD ++M   L EYE+D+ +MPLG
Sbjct: 641  LEIDYGQDEEAVKKLAVKP-GTKSKLPKPVQELVGMIFDVESMKKALVEYEIDLQKMPLG 699

Query: 397  KLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNK 456
            KLS + +   YSIL+EV   + + +     +  IL L+N FYT IPH FG+  PPLL+N 
Sbjct: 700  KLSRRQIQAAYSILSEVQQAVSQGSS----ESQILDLSNRFYTLIPHDFGMKKPPLLNNT 755

Query: 457  QLVVQKMEMIDAMTQIELAYTIKQEGPS-AGVHPLVNCYEKLQANIKSVDTSHPHYEIIH 515
              V  K+EM+D +  IE+AY++ + G   +   P+   YEKL+ +IK VD      E+I 
Sbjct: 756  DSVQAKVEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIKVVDRDSEEAEVIR 815

Query: 516  KYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISK 575
            KYV+NTHA TH  Y L +  IF++ R GE +R+KPF +L N+ LLWHGSR TNFA I+S+
Sbjct: 816  KYVKNTHATTHNAYDLEVIDIFKIEREGESQRYKPFRQLHNRRLLWHGSRTTNFAGILSQ 875

Query: 576  GLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMF 635
            GL IAPPEAPVTGYMFGKGIYFAD VSKSANYC T+  + +GL+LL EVALG +      
Sbjct: 876  GLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLGEVALGNM------ 929

Query: 636  GKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQ 695
                           Y + ++++                       ++KLP G HSV+G 
Sbjct: 930  ---------------YELKHASH-----------------------ISKLPKGKHSVKGL 951

Query: 696  GRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRF 755
            G+  PDP  SI LD  + VPLGT I        +  LLYNE+IVYD AQV ++Y+LK++F
Sbjct: 952  GKTAPDPSASITLD-GVEVPLGTGIP---SGVNDTCLLYNEYIVYDIAQVNLKYLLKLKF 1007

Query: 756  NYK 758
            N+K
Sbjct: 1008 NFK 1010
Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism. This modification follows DNA damages and appears as an obligatory step in a detection/signaling pathway leading to the reparation of DNA strand breaks. Mediates the poly(ADP-ribosyl)ation of APLF and CHFR. Positively regulates the transcription of MTUS1 and negatively regulates the transcription of MTUS2/TIP150. With EEF1A1 and TXK, forms a complex that acts as a T-helper 1 (Th1) cell-specific transcription factor and binds the promoter of IFN-gamma to directly regulate its transcription, and is thus involved importantly in Th1 cytokine production.
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 3EC: 0
>sp|P09874|PARP1_HUMAN Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=PARP1 PE=1 SV=4 Back     alignment and function description
>sp|P18493|PARP1_BOVIN Poly [ADP-ribose] polymerase 1 OS=Bos taurus GN=PARP1 PE=2 SV=2 Back     alignment and function description
>sp|P11103|PARP1_MOUSE Poly [ADP-ribose] polymerase 1 OS=Mus musculus GN=Parp1 PE=1 SV=3 Back     alignment and function description
>sp|Q9R152|PARP1_CRIGR Poly [ADP-ribose] polymerase 1 OS=Cricetulus griseus GN=PARP1 PE=2 SV=3 Back     alignment and function description
>sp|Q11208|PARP_SARPE Poly [ADP-ribose] polymerase OS=Sarcophaga peregrina PE=1 SV=1 Back     alignment and function description
>sp|P35875|PARP_DROME Poly [ADP-ribose] polymerase OS=Drosophila melanogaster GN=Parp PE=2 SV=1 Back     alignment and function description
>sp|P26446|PARP1_CHICK Poly [ADP-ribose] polymerase 1 OS=Gallus gallus GN=PARP1 PE=1 SV=2 Back     alignment and function description
>sp|P31669|PARP1_XENLA Poly [ADP-ribose] polymerase 1 (Fragment) OS=Xenopus laevis GN=parp1 PE=2 SV=1 Back     alignment and function description
>sp|Q5Z8Q9|PRP2A_ORYSJ Poly [ADP-ribose] polymerase 2-A OS=Oryza sativa subsp. japonica GN=PARP2-A PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query758
332252144 955 PREDICTED: poly [ADP-ribose] polymerase 0.683 0.542 0.382 5e-99
383864408 991 PREDICTED: poly [ADP-ribose] polymerase- 0.465 0.356 0.465 5e-97
328790898 991 PREDICTED: poly [ADP-ribose] polymerase 0.697 0.533 0.359 4e-96
193690639 1008 PREDICTED: poly [ADP-ribose] polymerase- 0.465 0.350 0.464 9e-96
195107726 992 GI23619 [Drosophila mojavensis] gi|19391 0.680 0.520 0.352 1e-95
345483040 992 PREDICTED: poly [ADP-ribose] polymerase 0.464 0.354 0.441 1e-94
345483042 990 PREDICTED: poly [ADP-ribose] polymerase 0.464 0.355 0.441 1e-94
344278585 1108 PREDICTED: poly [ADP-ribose] polymerase 0.485 0.332 0.451 8e-94
307182369 983 Poly [ADP-ribose] polymerase [Camponotus 0.465 0.359 0.435 1e-93
395836171 1014 PREDICTED: poly [ADP-ribose] polymerase 0.485 0.362 0.446 2e-93
>gi|332252144|ref|XP_003275213.1| PREDICTED: poly [ADP-ribose] polymerase 1 [Nomascus leucogenys] Back     alignment and taxonomy information
 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 234/611 (38%), Positives = 335/611 (54%), Gaps = 93/611 (15%)

Query: 177 KQKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSK 236
           K ++ A I +LGG  ++   +  +  I+TK  VE M       + MEE+KE  I VV   
Sbjct: 405 KDEVKAMIEKLGG-KLTGTANKASLCISTKKEVEKMN------KKMEEVKEANIRVVSED 457

Query: 237 FIKD--AANGKVLELIEKMNLAPWGSDDSAKHLAQGYSILNEVISVLDRNAEADVKD--- 291
           F++D  A+   + EL     L+PWG++  A+ + +  +   +  + L + ++  VK+   
Sbjct: 458 FLQDVSASTKSLQELFLAHILSPWGAEVKAEPV-EVVAPRGKSGAALSKKSKGQVKEEGI 516

Query: 292 -----RLILTL-------TNSFYTHIPH-----------SFGLADPPLLDNKQLVVQKME 328
                R+ LTL        +S   H  H           + GL D     N      K++
Sbjct: 517 NKSEKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVFSATLGLVDIVKGTNSYY---KLQ 573

Query: 329 MIDAMTQKLLDVKYEDTSKSKKVKVEPMDIECSLEKPVAALVELLFDEKAMTATLKEYEL 388
           +++   +      Y D    KK+ V P   +  L KPV  L++++FD ++M   + EYE+
Sbjct: 574 LLEDDKENRQSGPYLDEEAVKKLTVNP-GTKSKLPKPVQDLIKMIFDVESMKKAMVEYEI 632

Query: 389 DMDRMPLGKLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLA 448
           D+ +MPLGKLS + +   YSIL+EV   L + +     D  IL L+N FYT IPH FG+ 
Sbjct: 633 DLQKMPLGKLSKRQIQAAYSILSEVQQALSQGSS----DSQILDLSNRFYTLIPHDFGMK 688

Query: 449 DPPLLDNKQLVVQKMEMIDAMTQIELAYTIKQEGP-SAGVHPLVNCYEKLQANIKSVDTS 507
            PPLL+N   V  K+EM+D +  IE+AY++ + G   +   P+   YEKL+ +IK VD  
Sbjct: 689 KPPLLNNADSVQAKVEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIKVVDRD 748

Query: 508 HPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLT 567
               EII KYV+NTHA TH  Y L +  IF++ R GE +R+KPF++L N+ LLWHGSR T
Sbjct: 749 SEEAEIIRKYVKNTHATTHNAYDLEVIDIFKIEREGECQRYKPFKQLHNRRLLWHGSRTT 808

Query: 568 NFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALG 627
           NFA I+S+GL IAPPEAPVTGYMFGKGIYFAD VSKSANYC T+  + +GL+LL EVALG
Sbjct: 809 NFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLGEVALG 868

Query: 628 KVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLPN 687
            +                     Y + ++++                       ++KLP 
Sbjct: 869 NM---------------------YELKHASH-----------------------ISKLPK 884

Query: 688 GFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKI 747
           G HSV+G G+  PDP  SI LD  + VPLGT I        +  LLYNE+IVYD AQV +
Sbjct: 885 GKHSVKGLGKTTPDPSASISLD-GVEVPLGTGIS---SGVNDTCLLYNEYIVYDIAQVNL 940

Query: 748 RYILKVRFNYK 758
           +Y+LK++FN+K
Sbjct: 941 KYLLKLKFNFK 951

Source: Nomascus leucogenys

Species: Nomascus leucogenys

Genus: Nomascus

Family: Hylobatidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom:

>gi|383864408|ref|XP_003707671.1| PREDICTED: poly [ADP-ribose] polymerase-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|328790898|ref|XP_624477.3| PREDICTED: poly [ADP-ribose] polymerase [Apis mellifera] Back     alignment and taxonomy information
>gi|193690639|ref|XP_001947212.1| PREDICTED: poly [ADP-ribose] polymerase-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|195107726|ref|XP_001998459.1| GI23619 [Drosophila mojavensis] gi|193915053|gb|EDW13920.1| GI23619 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|345483040|ref|XP_003424731.1| PREDICTED: poly [ADP-ribose] polymerase isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|345483042|ref|XP_001604797.2| PREDICTED: poly [ADP-ribose] polymerase isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|344278585|ref|XP_003411074.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Loxodonta africana] Back     alignment and taxonomy information
>gi|307182369|gb|EFN69632.1| Poly [ADP-ribose] polymerase [Camponotus floridanus] Back     alignment and taxonomy information
>gi|395836171|ref|XP_003791037.1| PREDICTED: poly [ADP-ribose] polymerase 1 [Otolemur garnettii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query758
FB|FBgn0010247994 Parp "Poly-(ADP-ribose) polyme 0.378 0.288 0.479 2.1e-105
UNIPROTKB|P098741014 PARP1 "Poly [ADP-ribose] polym 0.377 0.282 0.508 2.1e-103
UNIPROTKB|F1MU081016 PARP1 "Poly [ADP-ribose] polym 0.377 0.281 0.511 3.5e-103
RGD|20531014 Parp1 "poly (ADP-ribose) polym 0.377 0.282 0.508 5.6e-103
UNIPROTKB|J9NXE3972 PARP1 "Uncharacterized protein 0.377 0.294 0.505 1.5e-102
UNIPROTKB|F1Q2M3976 PARP1 "Uncharacterized protein 0.377 0.293 0.505 1.5e-102
UNIPROTKB|P184931016 PARP1 "Poly [ADP-ribose] polym 0.377 0.281 0.508 1.9e-102
MGI|MGI:13408061013 Parp1 "poly (ADP-ribose) polym 0.377 0.282 0.505 1.3e-101
UNIPROTKB|I3LDH31018 PARP1 "Uncharacterized protein 0.377 0.280 0.498 3.8e-101
UNIPROTKB|F1NL051015 PARP1 "Poly [ADP-ribose] polym 0.369 0.275 0.489 9.6e-101
FB|FBgn0010247 Parp "Poly-(ADP-ribose) polymerase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 709 (254.6 bits), Expect = 2.1e-105, Sum P(3) = 2.1e-105
 Identities = 141/294 (47%), Positives = 198/294 (67%)

Query:   338 LDVKYEDTSKSKKVKVEPMDIECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGK 397
             ++++Y+D  K   VK E       LE  V  L++L+FD  +M  TL E+ +DMD+MPLGK
Sbjct:   625 IEIQYDDDQKL--VKHESHFFTSKLEISVQNLIKLIFDIDSMNKTLMEFHIDMDKMPLGK 682

Query:   398 LSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQ 457
             LSA  +   Y ++ E+ +VL+  +    K   ++  TN FYT IPH+FG+  P L++  Q
Sbjct:   683 LSAHQIQSAYRVVKEIYNVLECGSNT-AK---LIDATNRFYTLIPHNFGVQLPTLIETHQ 738

Query:   458 LVVQKMEMIDAMTQIELAYTI-KQEGPSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIHK 516
              +    +M+D++ +IE+AY+I K E  S   +PL N Y +++  + ++D +   + I+ +
Sbjct:   739 QIEDLRQMLDSLAEIEVAYSIIKSEDVSDACNPLDNHYAQIKTQLVALDKNSEEFSILSQ 798

Query:   517 YVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKG 576
             YV+NTHA TH+ Y L I  +F+VSR GE +RFKPF+KL N+ LLWHGSRLTNF  I+S G
Sbjct:   799 YVKNTHASTHKSYDLKIVDVFKVSRQGEARRFKPFKKLHNRKLLWHGSRLTNFVGILSHG 858

Query:   577 LCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVV 630
             L IAPPEAP TGYMFGKGIYFAD VSKSANYC T+  N+ GL+LL EVALG ++
Sbjct:   859 LRIAPPEAPPTGYMFGKGIYFADMVSKSANYCCTSQQNSTGLMLLSEVALGDMM 912
GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=ISS;IDA
GO:0005634 "nucleus" evidence=NAS
GO:0006471 "protein ADP-ribosylation" evidence=IMP;NAS;TAS
GO:0007000 "nucleolus organization" evidence=IMP
GO:0005730 "nucleolus" evidence=IDA;TAS
GO:0005703 "polytene chromosome puff" evidence=IDA;TAS
GO:0051276 "chromosome organization" evidence=TAS
GO:0035079 "polytene chromosome puffing" evidence=TAS
GO:0007552 "metamorphosis" evidence=TAS
GO:0009303 "rRNA transcription" evidence=TAS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0005700 "polytene chromosome" evidence=IDA;TAS
GO:0006963 "positive regulation of antibacterial peptide biosynthetic process" evidence=IMP
GO:0005719 "nuclear euchromatin" evidence=IDA
GO:0045087 "innate immune response" evidence=IMP
GO:0035080 "heat shock-mediated polytene chromosome puffing" evidence=IEP;IMP
GO:0008270 "zinc ion binding" evidence=IEA
GO:0051287 "NAD binding" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA
GO:0051457 "maintenance of protein location in nucleus" evidence=IMP
GO:0005694 "chromosome" evidence=IDA
GO:0048812 "neuron projection morphogenesis" evidence=IMP
GO:0043484 "regulation of RNA splicing" evidence=IMP
GO:0042393 "histone binding" evidence=IPI
GO:0035363 "histone locus body" evidence=IDA
GO:0015030 "Cajal body" evidence=IDA
GO:0030576 "Cajal body organization" evidence=IMP
UNIPROTKB|P09874 PARP1 "Poly [ADP-ribose] polymerase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MU08 PARP1 "Poly [ADP-ribose] polymerase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|2053 Parp1 "poly (ADP-ribose) polymerase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|J9NXE3 PARP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q2M3 PARP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P18493 PARP1 "Poly [ADP-ribose] polymerase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1340806 Parp1 "poly (ADP-ribose) polymerase family, member 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|I3LDH3 PARP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NL05 PARP1 "Poly [ADP-ribose] polymerase 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.20.691
3rd Layer2.4.2.300.737

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query758
cd01437347 cd01437, parp_like, Poly(ADP-ribose) polymerase (p 1e-132
PLN03124643 PLN03124, PLN03124, poly [ADP-ribose] polymerase; 1e-104
PLN03123981 PLN03123, PLN03123, poly [ADP-ribose] polymerase; 5e-93
pfam00644206 pfam00644, PARP, Poly(ADP-ribose) polymerase catal 1e-69
pfam02877130 pfam02877, PARP_reg, Poly(ADP-ribose) polymerase, 2e-39
PLN03122815 PLN03122, PLN03122, Poly [ADP-ribose] polymerase; 4e-38
cd08001104 cd08001, WGR_PARP1_like, WGR domain of poly(ADP-ri 4e-24
PLN03123981 PLN03123, PLN03123, poly [ADP-ribose] polymerase; 2e-17
smart0077384 smart00773, WGR, Proposed nucleic acid binding dom 1e-15
pfam0540683 pfam05406, WGR, WGR domain 4e-15
pfam02877130 pfam02877, PARP_reg, Poly(ADP-ribose) polymerase, 5e-15
cd07997102 cd07997, WGR_PARP, WGR domain of poly(ADP-ribose) 7e-14
cd01341137 cd01341, ADP_ribosyl, ADP_ribosylating enzymes cat 3e-13
cd01437347 cd01437, parp_like, Poly(ADP-ribose) polymerase (p 6e-11
pfam0064581 pfam00645, zf-PARP, Poly(ADP-ribose) polymerase an 1e-09
cd0799473 cd07994, WGR, WGR domain 2e-08
cd08003103 cd08003, WGR_PARP2_like, WGR domain of poly(ADP-ri 3e-07
PLN03124643 PLN03124, PLN03124, poly [ADP-ribose] polymerase; 1e-06
cd08002100 cd08002, WGR_PARP3_like, WGR domain of poly(ADP-ri 2e-06
cd01438223 cd01438, tankyrase_like, Tankyrases interact with 6e-06
cd01438223 cd01438, tankyrase_like, Tankyrases interact with 4e-05
PLN03124643 PLN03124, PLN03124, poly [ADP-ribose] polymerase; 1e-04
PLN03123 981 PLN03123, PLN03123, poly [ADP-ribose] polymerase; 2e-04
cd0799674 cd07996, WGR_MMR_like, WGR domain of molybdate met 0.003
>gnl|CDD|238717 cd01437, parp_like, Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information 
 Score =  396 bits (1019), Expect = e-132
 Identities = 171/396 (43%), Positives = 238/396 (60%), Gaps = 49/396 (12%)

Query: 359 ECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLD 418
           +  L+KPV  L++L+FD + M   + E ++D  +MPLGKLS   + +GY +L E+   L 
Sbjct: 1   KSKLDKPVQELIKLIFDVEMMKKAMTELKIDASKMPLGKLSKNQIQKGYEVLKEIEEALK 60

Query: 419 RNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAYTI 478
           R +        +  L+N FYT IPH FG++ PP++DN++L+  K E+++A+  IE+A  +
Sbjct: 61  RGSSQG---SQLEELSNEFYTLIPHDFGMSKPPVIDNEELLKAKRELLEALRDIEIASKL 117

Query: 479 KQEGPSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFE 538
            ++       PL   YEKL+  I+ +D     Y+II KY++NTHA T  EY++ ++ IF 
Sbjct: 118 LKDDEDDSDDPLDANYEKLKCKIEPLDKDSEEYKIIEKYLKNTHAPTT-EYTVEVQEIFR 176

Query: 539 VSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFA 598
           V R GE  RFKPF+KLGN+ LLWHGSRLTNF  I+S+GL IAPPEAPVTGYMFGKGIYFA
Sbjct: 177 VEREGETDRFKPFKKLGNRKLLWHGSRLTNFVGILSQGLRIAPPEAPVTGYMFGKGIYFA 236

Query: 599 DSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTN 658
           D  SKSANYC  ++++  GLLLLCEVALGK+                 K A+Y M     
Sbjct: 237 DMFSKSANYCHASASDPTGLLLLCEVALGKMN--------------ELKKADY-MA---- 277

Query: 659 NVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGT 718
                                    +LP G HSV+G G+  PDP    +  + + VPLG 
Sbjct: 278 ------------------------KELPKGKHSVKGLGKTAPDPSEFEIDLDGVVVPLGK 313

Query: 719 LIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVR 754
            +  P     + SLLYNE+IVYD AQV+++Y+L+V+
Sbjct: 314 PV--PSGHKTDTSLLYNEYIVYDVAQVRLKYLLEVK 347

Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active. Poly(ADP-ribose)-like polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length through interactions with telomere repeat binding factor 1. Length = 347
>gnl|CDD|215591 PLN03124, PLN03124, poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>gnl|CDD|216040 pfam00644, PARP, Poly(ADP-ribose) polymerase catalytic domain Back     alignment and domain information
>gnl|CDD|190460 pfam02877, PARP_reg, Poly(ADP-ribose) polymerase, regulatory domain Back     alignment and domain information
>gnl|CDD|178669 PLN03122, PLN03122, Poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>gnl|CDD|153428 cd08001, WGR_PARP1_like, WGR domain of poly(ADP-ribose) polymerase 1 and similar proteins Back     alignment and domain information
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>gnl|CDD|214814 smart00773, WGR, Proposed nucleic acid binding domain Back     alignment and domain information
>gnl|CDD|218579 pfam05406, WGR, WGR domain Back     alignment and domain information
>gnl|CDD|190460 pfam02877, PARP_reg, Poly(ADP-ribose) polymerase, regulatory domain Back     alignment and domain information
>gnl|CDD|153426 cd07997, WGR_PARP, WGR domain of poly(ADP-ribose) polymerases Back     alignment and domain information
>gnl|CDD|238651 cd01341, ADP_ribosyl, ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates Back     alignment and domain information
>gnl|CDD|238717 cd01437, parp_like, Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information
>gnl|CDD|189650 pfam00645, zf-PARP, Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region Back     alignment and domain information
>gnl|CDD|153424 cd07994, WGR, WGR domain Back     alignment and domain information
>gnl|CDD|153430 cd08003, WGR_PARP2_like, WGR domain of poly(ADP-ribose) polymerases Back     alignment and domain information
>gnl|CDD|215591 PLN03124, PLN03124, poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>gnl|CDD|153429 cd08002, WGR_PARP3_like, WGR domain of poly(ADP-ribose) polymerase 3 and similar proteins Back     alignment and domain information
>gnl|CDD|238718 cd01438, tankyrase_like, Tankyrases interact with the telomere reverse transcriptase complex (TERT) Back     alignment and domain information
>gnl|CDD|238718 cd01438, tankyrase_like, Tankyrases interact with the telomere reverse transcriptase complex (TERT) Back     alignment and domain information
>gnl|CDD|215591 PLN03124, PLN03124, poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>gnl|CDD|153425 cd07996, WGR_MMR_like, WGR domain of molybdate metabolism regulator and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 758
PLN03124643 poly [ADP-ribose] polymerase; Provisional 100.0
PLN03122815 Poly [ADP-ribose] polymerase; Provisional 100.0
PLN03123981 poly [ADP-ribose] polymerase; Provisional 100.0
cd01437347 parp_like Poly(ADP-ribose) polymerase (parp) catal 100.0
KOG1037|consensus531 100.0
PF00644206 PARP: Poly(ADP-ribose) polymerase catalytic domain 100.0
cd01438223 tankyrase_like Tankyrases interact with the telome 100.0
PF02877133 PARP_reg: Poly(ADP-ribose) polymerase, regulatory 99.98
cd08003103 WGR_PARP2_like WGR domain of poly(ADP-ribose) poly 99.97
cd08001104 WGR_PARP1_like WGR domain of poly(ADP-ribose) poly 99.95
PLN03123981 poly [ADP-ribose] polymerase; Provisional 99.95
cd08002100 WGR_PARP3_like WGR domain of poly(ADP-ribose) poly 99.94
cd07997102 WGR_PARP WGR domain of poly(ADP-ribose) polymerase 99.93
cd01439121 TCCD_inducible_PARP_like Poly(ADP-ribose) polymera 99.87
cd01341137 ADP_ribosyl ADP_ribosylating enzymes catalyze the 99.86
smart0077384 WGR Proposed nucleic acid binding domain. This dom 99.84
PLN03122815 Poly [ADP-ribose] polymerase; Provisional 99.83
cd0799473 WGR WGR domain. The WGR domain is found in a varie 99.8
PF0540681 WGR: WGR domain; InterPro: IPR008893 This domain i 99.79
cd0799674 WGR_MMR_like WGR domain of molybdate metabolism re 99.64
PLN03124643 poly [ADP-ribose] polymerase; Provisional 99.39
COG383185 Uncharacterized conserved protein [Function unknow 98.97
cd01437347 parp_like Poly(ADP-ribose) polymerase (parp) catal 98.79
PF0064582 zf-PARP: Poly(ADP-ribose) polymerase and DNA-Ligas 98.65
PF02877133 PARP_reg: Poly(ADP-ribose) polymerase, regulatory 98.54
cd0799877 WGR_DNA_ligase WGR domain of bacterial DNA ligases 98.27
cd01438223 tankyrase_like Tankyrases interact with the telome 97.19
cd01341137 ADP_ribosyl ADP_ribosylating enzymes catalyze the 97.18
KOG1037|consensus531 96.79
KOG4437|consensus482 96.59
PF00644206 PARP: Poly(ADP-ribose) polymerase catalytic domain 96.48
cd01439121 TCCD_inducible_PARP_like Poly(ADP-ribose) polymera 95.86
>PLN03124 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.7e-130  Score=1114.07  Aligned_cols=492  Identities=39%  Similarity=0.702  Sum_probs=449.7

Q ss_pred             CCCceeEEEecCCcccCCCCC--CCCceEEEEeCCcceeeeEEEeecccCCCceeEEEEEEeecCCCCeEEEEEeecccc
Q psy6813          62 SKSGTVKLQIKDGLAVDPDSG--LADTTELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIG  139 (758)
Q Consensus        62 ~~~~~~k~~~k~~~~VD~~~~--~~~~~~Vy~~~~~~Y~~~~L~~tdi~~n~nkfY~iQll~~~~~~~~y~v~~~WGRVG  139 (758)
                      ..++.+++++||+++||+.|+  +.+++|||++++.+| +|||||||+++|+|+||+||||+++. ++.|+||+||||||
T Consensus       140 ~~~~~~~~~~k~~~~vD~~~~~~~~~~~hVyed~g~iY-da~Lnqtdi~~n~NkFY~iQlLe~d~-~~~Y~v~~rWGRVG  217 (643)
T PLN03124        140 KEEKIVTATKKGRAVLDQWLPDHIKSNYHVLEEGDDVY-DAMLNQTNVGDNNNKFYVLQVLESDD-GSKYMVYTRWGRVG  217 (643)
T ss_pred             ccccceeeeeecccccCCCCCccccCceEEEecCCeEE-EEEEEccccCCCCcceEEEEEEEeCC-CCeEEEEEEeCccC
Confidence            357889999999999997655  557899999999999 99999999999999999999999988 78999999999999


Q ss_pred             ccCCCccccc-CCCHHHHHHHHHHHHHhHhCCCCccchhhHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCc
Q psy6813         140 TSIGGTKVQD-FKDVESAFDEFDRCFEKETGNTSGKDAKQKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKG  218 (758)
Q Consensus       140 ~~~G~~~~~~-f~~~~~A~~~F~k~F~~KTgn~w~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (758)
                      + .||+++.+ |.++++|+.+|+++|++||||.|++|                                           
T Consensus       218 ~-~Gq~~l~~~~~sle~Ai~~F~kkF~eKTGN~W~~R-------------------------------------------  253 (643)
T PLN03124        218 V-KGQDKLHGPYDSREPAIREFEKKFYDKTKNHWSDR-------------------------------------------  253 (643)
T ss_pred             C-cCcccccCCCCCHHHHHHHHHHHHHHHhCCchhhc-------------------------------------------
Confidence            7 69999985 89999999999999999999999999                                           


Q ss_pred             hhhhHHHHhhccccccchhhhhhhchhHHHHHHhhccCCCCCCchhhhhhhhhhhHHHHHHHhhccccccchhhhhhcCC
Q psy6813         219 ARAMEELKEYGIHVVPSKFIKDAANGKVLELIEKMNLAPWGSDDSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLT  298 (758)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~w~~~~s~~~~~~~y~il~~~~~~~~~~~~~~~~~~~i~~~~  298 (758)
                                      .+|.+                                                         +|
T Consensus       254 ----------------~~F~k---------------------------------------------------------~p  260 (643)
T PLN03124        254 ----------------KNFIS---------------------------------------------------------HP  260 (643)
T ss_pred             ----------------ccccc---------------------------------------------------------cC
Confidence                            37988                                                         89


Q ss_pred             CcceeccccCCCCCCCCCCchHHHHHHHHHHHHHHHhhhhcccccccccc-ccc---cccCCCCCCCCCHHHHHHHHHHh
Q psy6813         299 NSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQKLLDVKYEDTSKS-KKV---KVEPMDIECSLEKPVAALVELLF  374 (758)
Q Consensus       299 ~kyy~~i~~~~g~~~~~~~~~~~~v~~k~e~l~~~~~~~~e~~y~~~~~~-~k~---~~~~~~~~s~L~~~Vq~Lvk~I~  374 (758)
                      |||++                                  ||+||+.++.. ...   ......++|+|+++||+||++||
T Consensus       261 gKY~~----------------------------------ie~dy~~~~~~~~~~~~~~~~~~~~~skL~~~Vq~Li~lIf  306 (643)
T PLN03124        261 KKYTW----------------------------------LEMDYEDEEESKKDKPSVSSEDKNKQSKLDPRVAQFISLIC  306 (643)
T ss_pred             CceeE----------------------------------EEeecccccchhhhccchhccccCCCCCCCHHHHHHHHHHh
Confidence            99999                                  77777765321 110   11123467999999999999999


Q ss_pred             cHHHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHhhhhhhhcccccCCCCCC--CC
Q psy6813         375 DEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADP--PL  452 (758)
Q Consensus       375 d~~~~~~~l~e~~~D~~kmPLGkLS~~qI~~a~~iL~ei~~~l~~~~~~~~~~~li~~lsn~fYtlIPh~fg~~~~--~l  452 (758)
                      |+++|+++|.+|++|+.+||||+||+.||.+||+||++|+++|+...    ... +.+|||+|||+|||+||+..|  |+
T Consensus       307 d~~~m~~~m~e~~~D~~KmPLGkLSk~qI~kgy~vL~ei~~~l~~~~----~~~-l~~lSn~FYTlIPH~FG~~~~~~~v  381 (643)
T PLN03124        307 DVSMMKQQMMEIGYNARKLPLGKLSKSTILKGYEVLKRIAEVISRSD----RET-LEELSGEFYTVIPHDFGFKKMRQFT  381 (643)
T ss_pred             CHHHHHHHHHHcCCCcccCCCcccCHHHHHHHHHHHHHHHHHHcccc----hHH-HHHHhcCeEEecCcccccCCCCccc
Confidence            99999999999999999999999999999999999999999997654    234 489999999999999999854  69


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHhhcCcEEEEcCCCChHHHHHHHHHHhcccCCCcCcccc
Q psy6813         453 LDNKQLVVQKMEMIDAMTQIELAYTIKQEGPSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLN  532 (758)
Q Consensus       453 id~~~~l~~k~~lLe~L~dIe~A~~li~~~~~~~~~Pld~~Y~~L~~~L~~Ld~~S~Ey~~I~ky~~nT~~~~h~~~~l~  532 (758)
                      |++.+.|+++++||++|.||++|++|+........||||.+|++|+|+|++|+++|+||++|.+|+.+||+++|..|+++
T Consensus       382 Idt~~~lk~k~elLe~L~DIevA~~ll~~~~~~~~~pld~~Y~~L~c~i~pLd~~S~efk~I~~Yl~nT~~~th~~y~l~  461 (643)
T PLN03124        382 IDTPQKLKHKLEMVEALGEIEIATKLLKDDIGEQDDPLYAHYKRLNCELEPLDTDSEEFSMIAKYLENTHGQTHSGYTLE  461 (643)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHcCCeeEEcCCCCHHHHHHHHHHHhcCCCccCcCcee
Confidence            99999999999999999999999999987666678999999999999999999999999999999999999999999999


Q ss_pred             cceeEEeecchhhhccccccccCCeEEeeccCCCcChHHHhhcCCccCCCCCCccccccccceEeccccccccccccCCC
Q psy6813         533 IEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNS  612 (758)
Q Consensus       533 I~~IfrV~r~~E~~rF~~~k~l~N~~LLwHGSr~~N~~gIL~qGLriappea~~tG~mFGkGIYFAD~~sKSa~Yc~~~~  612 (758)
                      |++||+|+|.+|.+||++|.+++|++|||||||.+||.|||++||+|+||++|.+|||||+||||||+++||++||+++.
T Consensus       462 V~~If~V~R~~E~~rF~~~~~~~Nr~LLWHGSr~~N~~gILs~GLriaPpea~~~GymfGkGIYFAd~~skSa~Yc~~~~  541 (643)
T PLN03124        462 IVQIFKVSREGEDERFQKFSSTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPSTGYMFGKGVYFADMFSKSANYCYASA  541 (643)
T ss_pred             EEEEEEeccccchhhHHHhhccCCeEEEEcCCCcccHHHHHhccCccCCcccccccccccceeEecchhhhhhhhhhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998765


Q ss_pred             CCccchhhHHHHhcccccceeecccccccccccCcccCccccCCCCCceeEEEEEeecCcceeecccccc-cCCCCCCCc
Q psy6813         613 TNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFV-TKLPNGFHS  691 (758)
Q Consensus       613 ~~~~glLlL~eVAlGa~~~g~mfGkGiYFAd~~SkSa~Yc~~~~~~~~r~mLLceVALG~~~e~~~a~~~-~~~p~G~~S  691 (758)
                      .++                                            .|+|||||||||++++++.++|. .++|+|+||
T Consensus       542 ~~~--------------------------------------------~g~llLceVaLG~~~el~~~~y~a~~~p~G~~S  577 (643)
T PLN03124        542 ANP--------------------------------------------DGVLLLCEVALGDMNELLQADYNANKLPPGKLS  577 (643)
T ss_pred             CCC--------------------------------------------eeEEEEEEEecCCcchhccCccccccCCCCcee
Confidence            443                                            45699999999999999999976 789999999


Q ss_pred             cccCCCccCCCCCCeeecCCeEeeCCccccCCCCcCCCCCCCCcEEEEecCCceeeeeEEEEEEEeC
Q psy6813         692 VQGQGRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFNYK  758 (758)
Q Consensus       692 v~g~G~~~Pdp~~~~~~~dgv~vP~G~~i~~p~~~~~~~~l~ynEyIVYd~~Qi~~rYLV~~~~~~~  758 (758)
                      |+|+|++.|||++.++++|||+||+|++++.+   ..+++|.||||||||++||+|||||+|+|+|+
T Consensus       578 ~kG~G~~~Pdp~~~~~~~dGV~VP~Gk~~~~~---~~~~~L~yNEYIVYd~~Qvr~rYLv~vkf~~~  641 (643)
T PLN03124        578 TKGVGRTVPDPSEAKTLEDGVVVPLGKPVESP---YSKGSLEYNEYIVYNVDQIRMRYVLQVKFNYK  641 (643)
T ss_pred             EEeccCCCCCcccceecCCCeEeeCCccccCC---CCCCccccCceEEechhHeEEEEEEEEEEeec
Confidence            99999999999999999999999999999753   34678999999999999999999999999996

>PLN03122 Poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>PLN03123 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information
>KOG1037|consensus Back     alignment and domain information
>PF00644 PARP: Poly(ADP-ribose) polymerase catalytic domain; InterPro: IPR012317 Poly(ADP-ribose) polymerases (PARP) are a family of enzymes present in eukaryotes, which catalyze the poly(ADP-ribosyl)ation of a limited number of proteins involved in chromatin architecture, DNA repair, or in DNA metabolism, including PARP itself Back     alignment and domain information
>cd01438 tankyrase_like Tankyrases interact with the telomere reverse transcriptase complex (TERT) Back     alignment and domain information
>PF02877 PARP_reg: Poly(ADP-ribose) polymerase, regulatory domain; InterPro: IPR004102 Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information
>cd08003 WGR_PARP2_like WGR domain of poly(ADP-ribose) polymerases Back     alignment and domain information
>cd08001 WGR_PARP1_like WGR domain of poly(ADP-ribose) polymerase 1 and similar proteins Back     alignment and domain information
>PLN03123 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>cd08002 WGR_PARP3_like WGR domain of poly(ADP-ribose) polymerase 3 and similar proteins Back     alignment and domain information
>cd07997 WGR_PARP WGR domain of poly(ADP-ribose) polymerases Back     alignment and domain information
>cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information
>cd01341 ADP_ribosyl ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates Back     alignment and domain information
>smart00773 WGR Proposed nucleic acid binding domain Back     alignment and domain information
>PLN03122 Poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>cd07994 WGR WGR domain Back     alignment and domain information
>PF05406 WGR: WGR domain; InterPro: IPR008893 This domain is named after the most conserved central motif of the domain Back     alignment and domain information
>cd07996 WGR_MMR_like WGR domain of molybdate metabolism regulator and related proteins Back     alignment and domain information
>PLN03124 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>COG3831 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information
>PF00645 zf-PARP: Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region; InterPro: IPR001510 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF02877 PARP_reg: Poly(ADP-ribose) polymerase, regulatory domain; InterPro: IPR004102 Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information
>cd07998 WGR_DNA_ligase WGR domain of bacterial DNA ligases Back     alignment and domain information
>cd01438 tankyrase_like Tankyrases interact with the telomere reverse transcriptase complex (TERT) Back     alignment and domain information
>cd01341 ADP_ribosyl ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates Back     alignment and domain information
>KOG1037|consensus Back     alignment and domain information
>KOG4437|consensus Back     alignment and domain information
>PF00644 PARP: Poly(ADP-ribose) polymerase catalytic domain; InterPro: IPR012317 Poly(ADP-ribose) polymerases (PARP) are a family of enzymes present in eukaryotes, which catalyze the poly(ADP-ribosyl)ation of a limited number of proteins involved in chromatin architecture, DNA repair, or in DNA metabolism, including PARP itself Back     alignment and domain information
>cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query758
4dqy_C506 Structure Of Human Parp-1 Bound To A Dna Double Str 1e-94
1uk0_A350 Crystal Structure Of Catalytic Domain Of Human Poly 2e-93
2rd6_A350 Parp Complexed With A861695 Length = 350 3e-93
1efy_A350 Crystal Structure Of The Catalytic Fragment Of Poly 3e-88
1a26_A361 The Catalytic Fragment Of Poly(Adp-Ribose) Polymera 3e-88
1gs0_A351 Crystal Structure Of The Catalytic Fragment Of Muri 2e-69
3kcz_A368 Human Poly(Adp-Ribose) Polymerase 2, Catalytic Frag 1e-64
3c49_A357 Human Poly(Adp-Ribose) Polymerase 3, Catalytic Frag 6e-40
2cr9_A139 Solution Structure Of Wgr Domain Of Poly(Adp-Ribose 8e-17
2rf5_A258 Crystal Structure Of Human Tankyrase 1- Catalytic P 9e-05
3mhk_A223 Human Tankyrase 2 - Catalytic Parp Domain In Comple 9e-05
3kr7_A240 Human Tankyrase 2 - Catalytic Parp Domain Length = 1e-04
4dvi_A217 Crystal Structure Of Tankyrase 1 With Iwr2 Length = 2e-04
4hki_A191 Tankyrase 2 In Complex With Flavone Length = 191 2e-04
3udd_A224 Tankyrase-1 In Complex With Small Molecule Inhibito 2e-04
3oda_A116 Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna Lengt 9e-04
>pdb|4DQY|C Chain C, Structure Of Human Parp-1 Bound To A Dna Double Strand Break Length = 506 Back     alignment and structure 
Iteration: 1

 Score =  344 bits (882), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 189/423 (44%), Positives = 254/423 (60%), Gaps = 55/423 (13%)
Query: 338 LDVKY-EDTSKSKKVKVEPMDIECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLG 396
           L++ Y +D    KK+ V P   +  L KPV  L++++FD ++M   + EYE+D+ +MPLG
Sbjct: 125 LEIDYGQDEEAVKKLTVNP-GTKSKLPKPVQDLIKMIFDVESMKKAMVEYEIDLQKMPLG 183
Query: 397 KLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNK 456
           KLS + +   YSIL+EV   + + +     D  IL L+N FYT IPH FG+  PPLL+N 
Sbjct: 184 KLSKRQIQAAYSILSEVQQAVSQGSS----DSQILDLSNRFYTLIPHDFGMKKPPLLNNA 239
Query: 457 QLVVQKMEMIDAMTQIELAYTIKQEGPS-AGVHPLVNCYEKLQANIKSVDTSHPHYEIIH 515
             V  K EM+D +  IE+AY++ + G   +   P+   YEKL+ +IK VD      EII 
Sbjct: 240 DSVQAKAEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIR 299
Query: 516 KYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISK 575
           KYV+NTHA TH  Y L +  IF++ R GE +R+KPF++L N+ LLWHGSR TNFA I+S+
Sbjct: 300 KYVKNTHATTHNAYDLEVIDIFKIEREGECQRYKPFKQLHNRRLLWHGSRTTNFAGILSQ 359
Query: 576 GLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMF 635
           GL IAPPEAPVTGYMFGKGIYFAD VSKSANYC T+  + +GL+LL EVAL         
Sbjct: 360 GLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLGEVAL--------- 410
Query: 636 GKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQ 695
                                              G + +   A  ++KLP G HSV+G 
Sbjct: 411 -----------------------------------GNMYELKHASHISKLPKGKHSVKGL 435
Query: 696 GRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRF 755
           G+  PDP  +I LD  + VPLGT I        + SLLYNE+IVYD AQV ++Y+LK++F
Sbjct: 436 GKTTPDPSANISLD-GVDVPLGTGIS---SGVNDTSLLYNEYIVYDIAQVNLKYLLKLKF 491
Query: 756 NYK 758
           N+K
Sbjct: 492 NFK 494
>pdb|1UK0|A Chain A, Crystal Structure Of Catalytic Domain Of Human Poly(Adp- Ribose) Polymerase With A Novel Inhibitor Length = 350 Back     alignment and structure
>pdb|2RD6|A Chain A, Parp Complexed With A861695 Length = 350 Back     alignment and structure
>pdb|1EFY|A Chain A, Crystal Structure Of The Catalytic Fragment Of Poly (Adp- Ribose) Polymerase Complexed With A Benzimidazole Inhibitor Length = 350 Back     alignment and structure
>pdb|1A26|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase Complexed With Carba-Nad Length = 361 Back     alignment and structure
>pdb|1GS0|A Chain A, Crystal Structure Of The Catalytic Fragment Of Murine Poly (Adp-Ribose) Polymerase-2 Length = 351 Back     alignment and structure
>pdb|3KCZ|A Chain A, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In Complex With An Inhibitor 3-Aminobenzamide Length = 368 Back     alignment and structure
>pdb|3C49|A Chain A, Human Poly(Adp-Ribose) Polymerase 3, Catalytic Fragment In Complex With An Inhibitor Ku0058948 Length = 357 Back     alignment and structure
>pdb|2CR9|A Chain A, Solution Structure Of Wgr Domain Of Poly(Adp-Ribose) Polymerase-1 Length = 139 Back     alignment and structure
>pdb|2RF5|A Chain A, Crystal Structure Of Human Tankyrase 1- Catalytic Parp Domain Length = 258 Back     alignment and structure
>pdb|3MHK|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With 2-(2- Pyridyl)-7,8-Dihydro-5h-Thiino[4,3-D]pyrimidin-4-Ol Length = 223 Back     alignment and structure
>pdb|3KR7|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain Length = 240 Back     alignment and structure
>pdb|4DVI|A Chain A, Crystal Structure Of Tankyrase 1 With Iwr2 Length = 217 Back     alignment and structure
>pdb|4HKI|A Chain A, Tankyrase 2 In Complex With Flavone Length = 191 Back     alignment and structure
>pdb|3UDD|A Chain A, Tankyrase-1 In Complex With Small Molecule Inhibitor Length = 224 Back     alignment and structure
>pdb|3ODA|A Chain A, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna Length = 116 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query758
3kjd_A368 Poly [ADP-ribose] polymerase 2; transferase, enzym 1e-108
3kjd_A368 Poly [ADP-ribose] polymerase 2; transferase, enzym 6e-09
1efy_A350 Poly (ADP-ribose) polymerase; benzimidazole, inhib 1e-108
1efy_A350 Poly (ADP-ribose) polymerase; benzimidazole, inhib 1e-09
4dqy_C506 Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-rib 1e-103
4dqy_C506 Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-rib 1e-32
3c4h_A357 Poly(ADP-ribose) polymerase 3; enzyme-inhibitor co 5e-91
3c4h_A357 Poly(ADP-ribose) polymerase 3; enzyme-inhibitor co 3e-09
4f0d_A277 PARP-16, poly [ADP-ribose] polymerase 16; transfer 2e-34
3u9h_A240 Tankyrase-2; protein-ligand complex, diphtheria to 9e-31
3blj_A221 Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, 2e-23
2pqf_A198 Poly [ADP-ribose] polymerase 12; enzyme-inhibitor 2e-23
3smj_A193 Poly [ADP-ribose] polymerase 14; diphtheria toxin 4e-23
3hkv_A217 PARP-10, poly [ADP-ribose] polymerase 10; NAD, tra 1e-22
2x5y_A173 Zinc finger CCCH-type antiviral protein 1; antivir 7e-19
2eoc_A124 Poly [ADP-ribose] polymerase 3; anti-parallel beta 2e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1v9x_A114 Poly (ADP-ribose) polymerase; PARP, DNA repair, in 4e-12
2dmj_A106 Poly (ADP-ribose) polymerase family, member 1; zin 4e-12
3od8_A116 Poly [ADP-ribose] polymerase 1; protein-DNA comple 1e-11
4av1_A223 Poly [ADP-ribose] polymerase 1; transferase, PARP1 4e-11
3odc_A111 Poly [ADP-ribose] polymerase 1; protein-DNA comple 9e-11
1uw0_A117 DNA ligase III; DNA repair, zinc finger, PARP-like 4e-10
2cs2_A134 Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repa 7e-10
2cok_A113 Poly [ADP-ribose] polymerase-1; BRCT domain, DNA r 2e-08
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 4e-04
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A Length = 368 Back     alignment and structure
 Score =  333 bits (855), Expect = e-108
 Identities = 140/418 (33%), Positives = 212/418 (50%), Gaps = 50/418 (11%)

Query: 340 VKYEDTSKSKKVKVEPMDIECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLS 399
           + +     S            S++  V  L++L+ + +AM   + E + +  + PLGKL+
Sbjct: 1   MHHHHHHSSGVDLGTENLYFQSMDLRVQELIKLICNVQAMEEMMMEMKYNTKKAPLGKLT 60

Query: 400 AKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLV 459
              +  GY  L ++   +          R ++   N FYT IPH FGL  PPL+  ++ +
Sbjct: 61  VAQIKAGYQSLKKIEDCIRAGQ----HGRALMEACNEFYTRIPHDFGLRTPPLIRTQKEL 116

Query: 460 VQKMEMIDAMTQIELAYTIKQEGPSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQ 519
            +K+++++A+  IE+A  + +    +  HPL   Y  L   ++ +D     +++I +Y+Q
Sbjct: 117 SEKIQLLEALGDIEIAIKLVKTELQSPEHPLDQHYRNLHCALRPLDHESYEFKVISQYLQ 176

Query: 520 NTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCI 579
           +THA TH +Y++ +  +FEV + GE + F+    L N+ LLWHGSR++N+  I+S GL I
Sbjct: 177 STHAPTHSDYTMTLLDLFEVEKDGEKEAFRE--DLHNRMLLWHGSRMSNWVGILSHGLRI 234

Query: 580 APPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGI 639
           A PEAP+TGYMFGKGIYFAD  SKSANYC  +   N GLLLL EVALG+           
Sbjct: 235 AHPEAPITGYMFGKGIYFADMSSKSANYCFASRLKNTGLLLLSEVALGQCNELL------ 288

Query: 640 YFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNC 699
                    AN                                  L  G HS +G G+  
Sbjct: 289 --------EANPKA-----------------------------EGLLQGKHSTKGLGKMA 311

Query: 700 PDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFNY 757
           P     + L+   TVPLG   D         +L YNE+IVY+P QV++RY+LKV+FN+
Sbjct: 312 PSSAHFVTLN-GSTVPLGPASDTGILNPDGYTLNYNEYIVYNPNQVRMRYLLKVQFNF 368
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A Length = 368 Back     alignment and structure
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A* Length = 350 Back     alignment and structure
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A* Length = 350 Back     alignment and structure
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A Length = 506 Back     alignment and structure
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A Length = 506 Back     alignment and structure
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A* Length = 357 Back     alignment and structure
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A* Length = 357 Back     alignment and structure
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens} Length = 277 Back     alignment and structure
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* Length = 240 Back     alignment and structure
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A* Length = 221 Back     alignment and structure
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens} Length = 198 Back     alignment and structure
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* Length = 193 Back     alignment and structure
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens} Length = 217 Back     alignment and structure
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens} Length = 173 Back     alignment and structure
>2eoc_A Poly [ADP-ribose] polymerase 3; anti-parallel beta-sheet, cell cycle control, DNA damage, transcription, NAD+, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana} Length = 114 Back     alignment and structure
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens} Length = 106 Back     alignment and structure
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A Length = 116 Back     alignment and structure
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A Length = 223 Back     alignment and structure
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A Length = 111 Back     alignment and structure
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12 Length = 117 Back     alignment and structure
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134 Back     alignment and structure
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A Length = 113 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query758
4dqy_C506 Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-rib 100.0
3kjd_A368 Poly [ADP-ribose] polymerase 2; transferase, enzym 100.0
1efy_A350 Poly (ADP-ribose) polymerase; benzimidazole, inhib 100.0
3c4h_A357 Poly(ADP-ribose) polymerase 3; enzyme-inhibitor co 100.0
3u9h_A240 Tankyrase-2; protein-ligand complex, diphtheria to 100.0
2x5y_A173 Zinc finger CCCH-type antiviral protein 1; antivir 100.0
2pqf_A198 Poly [ADP-ribose] polymerase 12; enzyme-inhibitor 100.0
2eoc_A124 Poly [ADP-ribose] polymerase 3; anti-parallel beta 99.98
3blj_A221 Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, 99.98
3hkv_A217 PARP-10, poly [ADP-ribose] polymerase 10; NAD, tra 99.97
3smj_A193 Poly [ADP-ribose] polymerase 14; diphtheria toxin 99.97
4f0d_A277 PARP-16, poly [ADP-ribose] polymerase 16; transfer 99.76
1v9x_A114 Poly (ADP-ribose) polymerase; PARP, DNA repair, in 99.23
3od8_A116 Poly [ADP-ribose] polymerase 1; protein-DNA comple 99.2
2dmj_A106 Poly (ADP-ribose) polymerase family, member 1; zin 99.19
1uw0_A117 DNA ligase III; DNA repair, zinc finger, PARP-like 99.1
4av1_A223 Poly [ADP-ribose] polymerase 1; transferase, PARP1 99.06
3odc_A111 Poly [ADP-ribose] polymerase 1; protein-DNA comple 98.95
2cs2_A134 Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repa 98.86
4av1_A223 Poly [ADP-ribose] polymerase 1; transferase, PARP1 98.54
1efy_A350 Poly (ADP-ribose) polymerase; benzimidazole, inhib 98.29
3kjd_A368 Poly [ADP-ribose] polymerase 2; transferase, enzym 98.26
3c4h_A357 Poly(ADP-ribose) polymerase 3; enzyme-inhibitor co 98.26
4dqy_C506 Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-rib 98.13
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 98.05
2cok_A113 Poly [ADP-ribose] polymerase-1; BRCT domain, DNA r 98.02
2pqf_A198 Poly [ADP-ribose] polymerase 12; enzyme-inhibitor 96.59
2x5y_A173 Zinc finger CCCH-type antiviral protein 1; antivir 95.87
3blj_A221 Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, 95.34
3u9h_A240 Tankyrase-2; protein-ligand complex, diphtheria to 95.31
4f0d_A277 PARP-16, poly [ADP-ribose] polymerase 16; transfer 95.09
3smj_A193 Poly [ADP-ribose] polymerase 14; diphtheria toxin 95.07
3hkv_A217 PARP-10, poly [ADP-ribose] polymerase 10; NAD, tra 94.47
2k6g_A109 Replication factor C subunit 1; protein, BRCT, DNA 89.03
2ebu_A112 Replication factor C subunit 1; A/B/A 3 layers, pa 87.4
1l7b_A92 DNA ligase; BRCT, autostructure, structural genomi 86.64
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A Back     alignment and structure
Probab=100.00  E-value=1.7e-124  Score=1059.69  Aligned_cols=492  Identities=46%  Similarity=0.824  Sum_probs=427.3

Q ss_pred             CCCceeEEEecCCcccCCCCCCCCceEEEEeCCcceeeeEEEeecccCCCceeEEEEEEeecCCCCeEEEEEeecccccc
Q psy6813          62 SKSGTVKLQIKDGLAVDPDSGLADTTELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGTS  141 (758)
Q Consensus        62 ~~~~~~k~~~k~~~~VD~~~~~~~~~~Vy~~~~~~Y~~~~L~~tdi~~n~nkfY~iQll~~~~~~~~y~v~~~WGRVG~~  141 (758)
                      |.++++|+++||+++|||+|++.+++|||++++.+| +|+|++||+++|+|+||+|||++++. .+.|+|||+|||||+.
T Consensus         2 ~~~~~~~~~~kg~~~Vd~~~~~~~~~~Vy~~~~~~Y-~~~L~~td~~~n~NkfY~lQll~~~~-~~~y~v~~rWGRVG~~   79 (506)
T 4dqy_C            2 KSEKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVF-SATLGLVDIVKGTNSYYKLQLLEDDK-ENRYWIFRSWGRVGTV   79 (506)
T ss_dssp             -------------CCCCGGGSCTTTSCCCEETTEES-EEEEEEECTTTCCEEEEEEECC---------CEEEEEEETTSS
T ss_pred             CCCceEEEEEeCCeecCCccCCCCceEEEEeCCeEE-EEEEEcccccCCCcceEEEEEEEcCC-CCEEEEEEEECccCcc
Confidence            568899999999999999999999999999999999 99999999999999999999999876 6799999999999985


Q ss_pred             CCCcccccCCCHHHHHHHHHHHHHhHhCCCCccchhhHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCchhh
Q psy6813         142 IGGTKVQDFKDVESAFDEFDRCFEKETGNTSGKDAKQKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARA  221 (758)
Q Consensus       142 ~G~~~~~~f~~~~~A~~~F~k~F~~KTgn~w~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (758)
                      +||+++++|+++++|+++|+++|++||||+|++|                                              
T Consensus        80 ~Gq~~l~~~~s~~~Ai~~F~k~F~~KTgn~W~~R----------------------------------------------  113 (506)
T 4dqy_C           80 IGSNKLEQMPSKEDAIEHFMKLYEEKTGNAWHSK----------------------------------------------  113 (506)
T ss_dssp             CEEEEEECCSCSHHHHHHHHHHHHHHHSSCSSCS----------------------------------------------
T ss_pred             cccceeccCCCHHHHHHHHHHHHHHHhcCCcccc----------------------------------------------
Confidence            6999999999999999999999999999999998                                              


Q ss_pred             hHHHHhhccccccchhhhhhhchhHHHHHHhhccCCCCCCchhhhhhhhhhhHHHHHHHhhccccccchhhhhhcCCCcc
Q psy6813         222 MEELKEYGIHVVPSKFIKDAANGKVLELIEKMNLAPWGSDDSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSF  301 (758)
Q Consensus       222 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~w~~~~s~~~~~~~y~il~~~~~~~~~~~~~~~~~~~i~~~~~ky  301 (758)
                                    +|++                                                         +||||
T Consensus       114 --------------~f~k---------------------------------------------------------~pgKy  122 (506)
T 4dqy_C          114 --------------NFTK---------------------------------------------------------YPKKF  122 (506)
T ss_dssp             --------------SCCC---------------------------------------------------------CTTCC
T ss_pred             --------------Cccc---------------------------------------------------------cCCcc
Confidence                          5877                                                         89999


Q ss_pred             eeccccCCCCCCCCCCchHHHHHHHHHHHHHHHhhhhccccccccccccccccCCCCCCCCCHHHHHHHHHHhcHHHHHH
Q psy6813         302 YTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQKLLDVKYEDTSKSKKVKVEPMDIECSLEKPVAALVELLFDEKAMTA  381 (758)
Q Consensus       302 y~~i~~~~g~~~~~~~~~~~~v~~k~e~l~~~~~~~~e~~y~~~~~~~k~~~~~~~~~s~L~~~Vq~Lvk~I~d~~~~~~  381 (758)
                      ++                                  +|+||+.+++..+.......++|+|+++||+||++|||+++|++
T Consensus       123 ~~----------------------------------ve~d~~~~~~~~~~~~~~~~~~s~L~~~Vq~Li~lIfd~~~~~~  168 (506)
T 4dqy_C          123 YP----------------------------------LEIDYGQDEEAVKKLTVNPGTKSKLPKPVQDLIKMIFDVESMKK  168 (506)
T ss_dssp             EE----------------------------------ECBC-----------------CCCSCHHHHHHHHHHSCHHHHHH
T ss_pred             ce----------------------------------eecccccchhhhhhhcccCCCCCCCCHHHHHHHHHHhHHHHHHH
Confidence            99                                  77777653221111011245689999999999999999999999


Q ss_pred             HHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHhhhhhhhcccccCCCCCCCCCCcHHHHHH
Q psy6813         382 TLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQ  461 (758)
Q Consensus       382 ~l~e~~~D~~kmPLGkLS~~qI~~a~~iL~ei~~~l~~~~~~~~~~~li~~lsn~fYtlIPh~fg~~~~~lid~~~~l~~  461 (758)
                      +|.+|++|+.+||||+||+.||.+||++|++|+++|++..   ....+ .+|||+|||+|||+||+++||+|++.+.|++
T Consensus       169 ~m~~~~~D~~k~PLGkLS~~qI~~g~~vL~~i~~~l~~~~---~~~~l-~~lsn~fYtlIPh~fg~~~pp~i~~~~~l~~  244 (506)
T 4dqy_C          169 AMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQGS---SDSQI-LDLSNRFYTLIPHDFGMKKPPLLNNADSVQA  244 (506)
T ss_dssp             HHHTTTBCCSSTTTSCBCHHHHHHHHHHHHHHHHHHHTTC---CHHHH-HHHHHHHHHHSCBCCTTSCCCCCCSHHHHHH
T ss_pred             HHHHhCCChhhCCCccCCHHHHHHHHHHHHHHHHHHhccc---cHHHH-HHHHhhhhEeCCccccCCCCCccCCHHHHHH
Confidence            9999999999999999999999999999999999998754   23444 8999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccC-CCCCCCCchhHHhhcCcEEEEcCCCChHHHHHHHHHHhcccCCCcCcccccceeEEee
Q psy6813         462 KMEMIDAMTQIELAYTIKQEG-PSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVS  540 (758)
Q Consensus       462 k~~lLe~L~dIe~A~~li~~~-~~~~~~Pld~~Y~~L~~~L~~Ld~~S~Ey~~I~ky~~nT~~~~h~~~~l~I~~IfrV~  540 (758)
                      +++||++|.||++|++|++.. .....||+|.+|++|+|+|++|+++|+||++|++||++|++++|..|.++|++||||+
T Consensus       245 k~~ll~~L~dieiA~~l~~~~~~~~~~~pld~~Y~~L~~~l~~L~~~s~Ey~~I~~~~~~T~~~~h~~~~~~I~~I~rI~  324 (506)
T 4dqy_C          245 KAEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIRKYVKNTHATTHNAYDLEVIDIFKIE  324 (506)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCSCCCTTSCHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHTCCSSCTTCCCCEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHhCcEEEECCCCChHHHHHHHHHHhccCcccccCCceeEeEEEEc
Confidence            999999999999999999865 3467899999999999999999999999999999999999999988999999999999


Q ss_pred             cchhhhccccccccCCeEEeeccCCCcChHHHhhcCCccCCCCCCccccccccceEeccccccccccccCCCCCccchhh
Q psy6813         541 RHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLL  620 (758)
Q Consensus       541 r~~E~~rF~~~k~l~N~~LLwHGSr~~N~~gIL~qGLriappea~~tG~mFGkGIYFAD~~sKSa~Yc~~~~~~~~glLl  620 (758)
                      |.+|+++|+++++++|+++|||||+.+||.+||++||+++|++++.+|+|||+|||||+++++|++||+++..       
T Consensus       325 ~~~e~~~f~~~k~~~N~~lL~HGT~~~n~~~Il~~Gf~~~~~~a~~~G~~fGkGiYFA~~askS~~Y~~~~~~-------  397 (506)
T 4dqy_C          325 REGECQRYKPFKQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQG-------  397 (506)
T ss_dssp             ETTTTTTTHHHHSSSCEEEEEEECCTTTHHHHHHHCSCCCCSSSCCTTCSSCSSEEEBSSHHHHHTTSCCCSS-------
T ss_pred             cHHHHhhHHHhhcCCCceEEecCCChHhHHHHHhcCCCcCCccCCcCCceeeeeEEecchhhccccccCCCCC-------
Confidence            9999999999999999999999999999999999999999999999999999999999999999888876532       


Q ss_pred             HHHHhcccccceeecccccccccccCcccCccccCCCCCceeEEEEEeecCcceeecccccccCCCCCCCccccCCCccC
Q psy6813         621 LCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNCP  700 (758)
Q Consensus       621 L~eVAlGa~~~g~mfGkGiYFAd~~SkSa~Yc~~~~~~~~r~mLLceVALG~~~e~~~a~~~~~~p~G~~Sv~g~G~~~P  700 (758)
                                                           ++.|+||||+||||++++++.+++++.||+|||||+|+|++.|
T Consensus       398 -------------------------------------~~~~~mll~~V~lG~~~~~~~~~~~~~~p~G~dSv~g~g~~~P  440 (506)
T 4dqy_C          398 -------------------------------------DPIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTP  440 (506)
T ss_dssp             -------------------------------------SCEEEEEEEEEECCSEEEESSCCCCSSCCTTCCEEEECCSEEE
T ss_pred             -------------------------------------CCeEEEEEEEEecCCceecccchhhhccCCCCceEEeCCcCcC
Confidence                                                 3457799999999999999988889999999999999999999


Q ss_pred             CCCCCeeecCCeEeeCCccccCCCCcCCCCCCCCcEEEEecCCceeeeeEEEEEEEeC
Q psy6813         701 DPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFNYK  758 (758)
Q Consensus       701 dp~~~~~~~dgv~vP~G~~i~~p~~~~~~~~l~ynEyIVYd~~Qi~~rYLV~~~~~~~  758 (758)
                      ||++. +++|||+||+|++++.+   ..+++|+||||||||++||||||||+|+|+|+
T Consensus       441 ~p~~~-~~~dGv~vP~G~~~~~~---~~~~~l~ynEyiVYd~~Qir~rYLv~v~~~~~  494 (506)
T 4dqy_C          441 DPSAN-ISLDGVDVPLGTGISSG---VNDTSLLYNEYIVYDIAQVNLKYLLKLKFNFK  494 (506)
T ss_dssp             CGGGC-EESSSCEECCCCEEECS---CCCCSCSBCEEEESSGGGEEEEEEEEEECCCC
T ss_pred             Ccccc-cccCCeEEECCCcccCC---CCCCcccccceEEEchHHeeEEEEEEEEEEcc
Confidence            99998 78899999999999744   34688999999999999999999999999986
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A Back     alignment and structure
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A* Back     alignment and structure
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A* Back     alignment and structure
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* 4hlh_A* 4hki_A* 4hkn_A* 4hl5_A* ... Back     alignment and structure
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens} Back     alignment and structure
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens} Back     alignment and structure
>2eoc_A Poly [ADP-ribose] polymerase 3; anti-parallel beta-sheet, cell cycle control, DNA damage, transcription, NAD+, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A* Back     alignment and structure
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens} Back     alignment and structure
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* 4f1l_A* 4f1q_A* Back     alignment and structure
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens} Back     alignment and structure
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A* Back     alignment and structure
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens} Back     alignment and structure
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12 Back     alignment and structure
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A Back     alignment and structure
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A Back     alignment and structure
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A Back     alignment and structure
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A* Back     alignment and structure
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A Back     alignment and structure
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A* Back     alignment and structure
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A Back     alignment and structure
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens} Back     alignment and structure
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens} Back     alignment and structure
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A* Back     alignment and structure
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* 4hlh_A* 4hki_A* 4hkn_A* 4hl5_A* ... Back     alignment and structure
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens} Back     alignment and structure
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* 4f1l_A* 4f1q_A* Back     alignment and structure
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens} Back     alignment and structure
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A Back     alignment and structure
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 758
d1efya2215 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase 2e-65
d1gs0a2217 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, 3e-65
d1gs0a1134 a.41.1.1 (A:207-340) Domain of poly(ADP-ribose) po 2e-35
d1gs0a1134 a.41.1.1 (A:207-340) Domain of poly(ADP-ribose) po 1e-13
d1efya1135 a.41.1.1 (A:662-796) Domain of poly(ADP-ribose) po 4e-35
d1efya1135 a.41.1.1 (A:662-796) Domain of poly(ADP-ribose) po 5e-14
d2cr9a1126 d.297.1.1 (A:8-133) Poly [ADP-ribose] polymerase-1 3e-27
d1uw0a_117 g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens 3e-10
>d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 215 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  214 bits (545), Expect = 2e-65
 Identities = 122/262 (46%), Positives = 154/262 (58%), Gaps = 48/262 (18%)

Query: 497 LQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGN 556
           L+ +IK VD      +II +YV+NTHA TH  Y L +  IF + R GE +R+KPF++L N
Sbjct: 1   LRTDIKVVDKDSEEAKIIKQYVKNTHAATHNAYDLKVVEIFRIEREGESQRYKPFKQLHN 60

Query: 557 KHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNV 616
           + LLWHGSR TNFA I+S+GL IAPPEAPVTGYMFGK                       
Sbjct: 61  RQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGK----------------------- 97

Query: 617 GLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKK 676
                                GIYFAD VSKSANYC T+  + +GL+LL EVALG + + 
Sbjct: 98  ---------------------GIYFADMVSKSANYCHTSQADPIGLILLGEVALGNMYEL 136

Query: 677 TQAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNE 736
             A  +TKLP G HSV+G G+  PDP  +  LD  + VPLG  I        +  LLYNE
Sbjct: 137 KNASHITKLPKGKHSVKGLGKTAPDPTATTTLD-GVEVPLGNGIS---TGINDTCLLYNE 192

Query: 737 FIVYDPAQVKIRYILKVRFNYK 758
           +IVYD AQV ++Y+LK++FNYK
Sbjct: 193 YIVYDVAQVNLKYLLKLKFNYK 214
>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 217 Back     information, alignment and structure
>d1gs0a1 a.41.1.1 (A:207-340) Domain of poly(ADP-ribose) polymerase {Mouse (Mus musculus) [TaxId: 10090]} Length = 134 Back     information, alignment and structure
>d1gs0a1 a.41.1.1 (A:207-340) Domain of poly(ADP-ribose) polymerase {Mouse (Mus musculus) [TaxId: 10090]} Length = 134 Back     information, alignment and structure
>d1efya1 a.41.1.1 (A:662-796) Domain of poly(ADP-ribose) polymerase {Chicken (Gallus gallus) [TaxId: 9031]} Length = 135 Back     information, alignment and structure
>d1efya1 a.41.1.1 (A:662-796) Domain of poly(ADP-ribose) polymerase {Chicken (Gallus gallus) [TaxId: 9031]} Length = 135 Back     information, alignment and structure
>d2cr9a1 d.297.1.1 (A:8-133) Poly [ADP-ribose] polymerase-1, PARP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId: 9606]} Length = 117 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query758
d1gs0a2217 Poly(ADP-ribose) polymerase, C-terminal domain {Mo 100.0
d1efya2215 Poly(ADP-ribose) polymerase, C-terminal domain {Ch 100.0
d2cr9a1126 Poly [ADP-ribose] polymerase-1, PARP-1 {Human (Hom 100.0
d1gs0a1134 Domain of poly(ADP-ribose) polymerase {Mouse (Mus 100.0
d1efya1135 Domain of poly(ADP-ribose) polymerase {Chicken (Ga 100.0
d1uw0a_117 DNA ligase III {Human (Homo sapiens) [TaxId: 9606] 99.15
d1gs0a1134 Domain of poly(ADP-ribose) polymerase {Mouse (Mus 98.83
d1efya1135 Domain of poly(ADP-ribose) polymerase {Chicken (Ga 98.8
d1gs0a2217 Poly(ADP-ribose) polymerase, C-terminal domain {Mo 97.31
d1efya2215 Poly(ADP-ribose) polymerase, C-terminal domain {Ch 96.21
d1l7ba_92 NAD+-dependent DNA ligase, domain 4 {Thermus therm 81.91
>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.8e-53  Score=429.62  Aligned_cols=215  Identities=49%  Similarity=0.870  Sum_probs=196.0

Q ss_pred             cCcEEEEcCCCChHHHHHHHHHHhcccCCCcCcccccceeEEeecchhhhccccccccCCeEEeeccCCCcChHHHhhcC
Q psy6813         497 LQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKG  576 (758)
Q Consensus       497 L~~~L~~Ld~~S~Ey~~I~ky~~nT~~~~h~~~~l~I~~IfrV~r~~E~~rF~~~k~l~N~~LLwHGSr~~N~~gIL~qG  576 (758)
                      |+|+|++|+++|+||++|.++|.+|++++|..+.++|++||+|+|.+++++|.  .+.+|+++|||||+.+|+.+||++|
T Consensus         1 L~c~i~~l~~~s~ey~~I~~~~~~t~~~~~~~~~~~I~~I~~v~r~~e~~~~~--~~~~n~~~LfHGT~~~n~~~Il~~G   78 (217)
T d1gs0a2           1 LHCALRPLDHESNEFKVISQYLQSTHAPTHKDYTMTLLDVFEVEKEGEKEAFR--EDLPNRMLLWHGSRLSNWVGILSHG   78 (217)
T ss_dssp             TTEEEEECCTTSHHHHHHHHHHHHTCCTTCCSEEEEEEEEEEEEETTHHHHSC--TTCSCEEEEEEEECGGGHHHHHHHC
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHhhCCCccCCCcceEEEEEEEcchhHHHHhh--hcCCceEEEEecccHHHHHHHHHcC
Confidence            79999999999999999999999999999988899999999999999999997  4789999999999999999999999


Q ss_pred             CccCCCCCCccccccccceEeccccccccccccCCCCCccchhhHHHHhcccccceeecccccccccccCcccCccccCC
Q psy6813         577 LCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNS  656 (758)
Q Consensus       577 Lriappea~~tG~mFGkGIYFAD~~sKSa~Yc~~~~~~~~glLlL~eVAlGa~~~g~mfGkGiYFAd~~SkSa~Yc~~~~  656 (758)
                      |+++|+.++.+|+|||+||||||++++|++||+++..                                           
T Consensus        79 f~~~~~~~~~~g~~fG~GiYfa~~~s~s~~y~~~~~~-------------------------------------------  115 (217)
T d1gs0a2          79 LRVAPPEAPITGYMFGKGIYFADMSSKSANYCFASRL-------------------------------------------  115 (217)
T ss_dssp             SCCCCSSSCGGGSTTSSSEEEBSCHHHHHGGGCCCSS-------------------------------------------
T ss_pred             CCCCCccCcccceeeeccceeccccccccccccCCcC-------------------------------------------
Confidence            9999999999999999999999999999988876432                                           


Q ss_pred             CCCceeEEEEEeecCcceeecccc-cccCCCCCCCccccCCCccCCCCCCeeecCCeEeeCCccccCCCCcCCCCCCCCc
Q psy6813         657 TNNVGLLLLCEVALGKVVKKTQAE-FVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYN  735 (758)
Q Consensus       657 ~~~~r~mLLceVALG~~~e~~~a~-~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~i~~p~~~~~~~~l~yn  735 (758)
                       ++.|+||||+||||++++.+..+ .+.+||+|+|||+|+|++.|+|+..... ||++||+|++++.......+.+|.||
T Consensus       116 -~~~~~m~l~~V~lG~~~~~~~~~~~~~~~p~g~~sv~~~g~~~p~p~~~~~~-~g~~vp~g~~~~s~~~~~~~~~l~~n  193 (217)
T d1gs0a2         116 -KNTGLLLLSEVALGQCNELLEANPKAQGLLRGKHSTKGMGKMAPSPAHFITL-NGSTVPLGPASDTGILNPEGYTLNYN  193 (217)
T ss_dssp             -SCEEEEEEEEEECCSEEEESSCCTTGGGGCTTCSEEEECCSEECCGGGCEEE-TTEEECCSCCEECCCCCSSSCCCSBC
T ss_pred             -CCeEEEEEEEEEecceeeeccCCcccccCCCCcceeeecccccCChhhcccc-CCeeccCCCccccCccCCCCCccccC
Confidence             34567999999999999887766 5788999999999999999999888765 99999999998754445567789999


Q ss_pred             EEEEecCCceeeeeEEEEEEEeC
Q psy6813         736 EFIVYDPAQVKIRYILKVRFNYK  758 (758)
Q Consensus       736 EyIVYd~~Qi~~rYLV~~~~~~~  758 (758)
                      ||||||++||+|||||+|+|+|+
T Consensus       194 EyVVy~~~Qv~~~YLi~~k~~~~  216 (217)
T d1gs0a2         194 EFIVYSPNQVRMRYLLKIQFNFL  216 (217)
T ss_dssp             EEEESCGGGEEEEEEEEEEEEEC
T ss_pred             eEEEEchhheeEEEEEEEEEEec
Confidence            99999999999999999999996
>d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2cr9a1 d.297.1.1 (A:8-133) Poly [ADP-ribose] polymerase-1, PARP-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gs0a1 a.41.1.1 (A:207-340) Domain of poly(ADP-ribose) polymerase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1efya1 a.41.1.1 (A:662-796) Domain of poly(ADP-ribose) polymerase {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gs0a1 a.41.1.1 (A:207-340) Domain of poly(ADP-ribose) polymerase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1efya1 a.41.1.1 (A:662-796) Domain of poly(ADP-ribose) polymerase {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure