Psyllid ID: psy6845


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60-------
MPSKKQQYNLVQQDEYDTRIPMHSEEAFQHGITFQAKTRQKNKKEEKKKKEEEKKKREKMVHVPSTN
ccccccccccccccccccccccccHHHHHHccEEEEHHHHHHHHHHHHHHHHHHHHHHEEEEccccc
ccccccccccccccccccccccccHHHHHcccEEEHHHHHHHcccccccccccccccccEEEccccc
mpskkqqynlvqqdeydtripmhseeafQHGITFQAKTRQKNKKEEKKKKEEEKKKREKMVHVPSTN
mpskkqqynlvqQDEYDTRIPMHSEEAfqhgitfqaktrqknkkeekkkkeeekkkrekmvhvpstn
MPSKKQQYNLVQQDEYDTRIPMHSEEAFQHGITFQAKTRQknkkeekkkkeeekkkrekMVHVPSTN
*******************************************************************
******Q*NLVQQDEYDTRIPMHSEEAFQHGITFQAKTR*********************VH*****
**********VQQDEYDTRIPMHSEEAFQHGITFQ********************************
******QYNLVQQDEYDTRIPMHSEEAFQHGITFQAKTRQKNK************************
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
ooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MPSKKQQYNLVQQDEYDTRIPMHSEEAFQHGITxxxxxxxxxxxxxxxxxxxxxxxxxxxxHVPSTN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query67 2.2.26 [Sep-21-2011]
Q8STF6 887 Dystrophin-like protein 1 yes N/A 0.552 0.041 0.512 1e-05
O54960 503 Carboxyl-terminal PDZ lig yes N/A 0.522 0.069 0.648 6e-05
Q9D3A8 503 Carboxyl-terminal PDZ lig yes N/A 0.522 0.069 0.648 6e-05
O75052 506 Carboxyl-terminal PDZ lig yes N/A 0.522 0.069 0.648 0.0001
>sp|Q8STF6|DYC1_CAEEL Dystrophin-like protein 1 OS=Caenorhabditis elegans GN=dyc-1 PE=1 SV=1 Back     alignment and function desciption
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 29/39 (74%), Gaps = 2/39 (5%)

Query: 1  MPSKKQQ--YNLVQQDEYDTRIPMHSEEAFQHGITFQAK 37
          MP +K+   Y+++  D YD RIP+H+E A+QHGI F+AK
Sbjct: 1  MPVRKKHGPYDIIADDVYDCRIPLHNELAYQHGIHFEAK 39




Together with dys-1 and hlh-1, participates in a common muscular function.
Caenorhabditis elegans (taxid: 6239)
>sp|O54960|CAPON_RAT Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein OS=Rattus norvegicus GN=Nos1ap PE=1 SV=1 Back     alignment and function description
>sp|Q9D3A8|CAPON_MOUSE Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein OS=Mus musculus GN=Nos1ap PE=1 SV=3 Back     alignment and function description
>sp|O75052|CAPON_HUMAN Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein OS=Homo sapiens GN=NOS1AP PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query67
270004758118 hypothetical protein TcasGA2_TC010533 [T 0.761 0.432 0.615 4e-10
189235605 649 PREDICTED: similar to nitric oxide synth 0.537 0.055 0.810 9e-10
328703457 462 PREDICTED: carboxyl-terminal PDZ ligand 0.537 0.077 0.810 2e-09
241167387 356 PTB/PID domain-containing protein [Ixode 0.537 0.101 0.783 2e-09
24200383651 conserved hypothetical protein [Pediculu 0.611 0.803 0.761 2e-09
346464755 380 hypothetical protein [Amblyomma maculatu 0.537 0.094 0.783 3e-09
390333630 828 PREDICTED: uncharacterized protein LOC10 0.537 0.043 0.756 6e-09
328790349 391 PREDICTED: dystrophin-like protein 1-lik 0.537 0.092 0.783 1e-08
307208756157 Dystrophin-like protein 1 [Harpegnathos 0.537 0.229 0.783 1e-08
332021671 627 Carboxyl-terminal PDZ ligand of neuronal 0.537 0.057 0.783 2e-08
>gi|270004758|gb|EFA01206.1| hypothetical protein TcasGA2_TC010533 [Tribolium castaneum] Back     alignment and taxonomy information
 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 39/52 (75%), Gaps = 1/52 (1%)

Query: 1  MPSKKQQYNLVQQDEYDTRIPMHSEEAFQHGITFQAKTRQKNKKEEKKKKEE 52
          MPSKKQ Y+LVQ D+YDTRIP+H EEAF HGITFQAK  +K    E   +++
Sbjct: 1  MPSKKQ-YDLVQNDDYDTRIPLHPEEAFHHGITFQAKVARKAINYETVSRDQ 51




Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235605|ref|XP_968392.2| PREDICTED: similar to nitric oxide synthase 1 (neuronal) adaptor protein [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328703457|ref|XP_003242211.1| PREDICTED: carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|241167387|ref|XP_002410056.1| PTB/PID domain-containing protein [Ixodes scapularis] gi|215494717|gb|EEC04358.1| PTB/PID domain-containing protein [Ixodes scapularis] Back     alignment and taxonomy information
>gi|242003836|ref|XP_002422878.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212505760|gb|EEB10140.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|346464755|gb|AEO32222.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information
>gi|390333630|ref|XP_003723752.1| PREDICTED: uncharacterized protein LOC100888835 [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|328790349|ref|XP_396475.3| PREDICTED: dystrophin-like protein 1-like [Apis mellifera] Back     alignment and taxonomy information
>gi|307208756|gb|EFN86033.1| Dystrophin-like protein 1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332021671|gb|EGI62030.1| Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein [Acromyrmex echinatior] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query67
MGI|MGI:1917979 503 Nos1ap "nitric oxide synthase 0.522 0.069 0.648 1.4e-06
RGD|620106 503 Nos1ap "nitric oxide synthase 0.522 0.069 0.648 1.4e-06
UNIPROTKB|O75052 506 NOS1AP "Carboxyl-terminal PDZ 0.522 0.069 0.648 2.4e-06
FB|FBgn0261555 698 CG42673 [Drosophila melanogast 0.507 0.048 0.621 2.1e-05
WB|WBGene00001116 887 dyc-1 [Caenorhabditis elegans 0.552 0.041 0.512 4.6e-05
UNIPROTKB|Q8STF6 887 dyc-1 "Dystrophin-like protein 0.552 0.041 0.512 4.6e-05
MGI|MGI:1917979 Nos1ap "nitric oxide synthase 1 (neuronal) adaptor protein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 120 (47.3 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 24/37 (64%), Positives = 31/37 (83%)

Query:     1 MPSKKQQYNLVQQDEYDTRIPMHSEEAFQHGITFQAK 37
             MPSK + YNLV  D +D RIP+H+E+AFQHGI+F+AK
Sbjct:     1 MPSKTK-YNLVD-DGHDLRIPLHNEDAFQHGISFEAK 35




GO:0002020 "protease binding" evidence=ISO
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0030165 "PDZ domain binding" evidence=ISO
GO:0050998 "nitric-oxide synthase binding" evidence=ISO
RGD|620106 Nos1ap "nitric oxide synthase 1 (neuronal) adaptor protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O75052 NOS1AP "Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0261555 CG42673 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00001116 dyc-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q8STF6 dyc-1 "Dystrophin-like protein 1" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8STF6DYC1_CAEELNo assigned EC number0.51280.55220.0417yesN/A
Q9D3A8CAPON_MOUSENo assigned EC number0.64860.52230.0695yesN/A
O54960CAPON_RATNo assigned EC number0.64860.52230.0695yesN/A
O75052CAPON_HUMANNo assigned EC number0.64860.52230.0691yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query67
cd01270 179 cd01270, PTB_CAPON-like, Carboxyl-terminal PDZ lig 3e-13
>gnl|CDD|241300 cd01270, PTB_CAPON-like, Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein (CAPON) Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
 Score = 60.4 bits (147), Expect = 3e-13
 Identities = 22/34 (64%), Positives = 27/34 (79%)

Query: 4  KKQQYNLVQQDEYDTRIPMHSEEAFQHGITFQAK 37
           ++ Y  +  D YDTRIP+H+EEAFQHGITFQAK
Sbjct: 1  SRKTYYNLVDDGYDTRIPLHNEEAFQHGITFQAK 34


CAPON (also known as Nitric oxide synthase 1 adaptor protein, NOS1AP, encodes a cytosolic protein that binds to the signaling molecule, neuronal NOS (nNOS). It contains a N-terminal PTB domain that binds to the small monomeric G protein, Dexras1 and a C-terminal PDZ-binding domain that mediates interactions with nNOS. Included in this cd are C. elegan proteins dystrobrevin, DYB-1, which controls neurotransmitter release and muscle Ca(2+) transients by localizing BK channels and DYstrophin-like phenotype and CAPON related,DYC-1, which is functionally related to dystrophin homolog, DYS-1. Mutations in the dystrophin gene causes Duchenne muscular dystrophy. DYS-1 shares sequence similarity, including key motifs, with their mammalian counterparts. These CAPON-like proteins all have a single PTB domain. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the Dab-like subgroup. Length = 179

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 67
KOG4458|consensus78 99.89
cd01268138 Numb Numb Phosphotyrosine-binding (PTB) domain. Nu 94.86
cd01270 140 DYC-1 DYC-1 (DYB-1 binding and Capon related) Phos 94.5
cd01215139 Dab Disabled (Dab) Phosphotyrosine-binding domain. 82.11
>KOG4458|consensus Back     alignment and domain information
Probab=99.89  E-value=2.5e-24  Score=139.34  Aligned_cols=42  Identities=52%  Similarity=0.883  Sum_probs=39.2

Q ss_pred             CCCCcc--ccccccCCCccccccCCchhhhhhcceEeeeechhh
Q psy6845           1 MPSKKQ--QYNLVQQDEYDTRIPMHSEEAFQHGITFQAKTRQKN   42 (67)
Q Consensus         1 MPskk~--~YnLV~dD~~D~RIPLHnEeAFqHGI~FqAKyig~~   42 (67)
                      ||++++  .||++-||++|||||||||.||||||+|+|||+|+-
T Consensus         1 mp~k~k~~pydii~dd~~d~riplhne~a~qhgi~feakyvgsl   44 (78)
T KOG4458|consen    1 MPSKKKHGPYDIIADDGHDCRIPLHNEDAFQHGICFEAKYVGSL   44 (78)
T ss_pred             CCcccccCCcceeecccccceeeccchhhhhccceEeeeeeeee
Confidence            999876  788888899999999999999999999999999975



>cd01268 Numb Numb Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>cd01270 DYC-1 DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain Back     alignment and domain information
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query67
3f0w_A168 NUMB-R, NUMB-like protein; PH domain-like, PID dom 93.9
1n3h_A 207 SHC transforming protein; free protein, beta sandw 90.82
1aqc_A 172 X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1 85.59
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain, phosphoprotein, signaling protei structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A Back     alignment and structure
Probab=93.90  E-value=0.0061  Score=39.62  Aligned_cols=36  Identities=19%  Similarity=0.204  Sum_probs=27.2

Q ss_pred             ccccccCCCccccc--cCCchhhhhhcc-eEeeeechhhH
Q psy6845           7 QYNLVQQDEYDTRI--PMHSEEAFQHGI-TFQAKTRQKNK   43 (67)
Q Consensus         7 ~YnLV~dD~~D~RI--PLHnEeAFqHGI-~FqAKyig~~~   43 (67)
                      .|||+. +....+-  -+|+++++.+|. .|.|||+|.-.
T Consensus        15 ~~~~~~-~s~~~~p~~w~~~~e~l~~g~~~f~vkYLGs~~   53 (168)
T 3f0w_A           15 TENLYF-QSMASRPHQWQADEDAVRKGTCSFPVRYLGHVE   53 (168)
T ss_dssp             CCCHHH-HHHHCCCTTTHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             ccccCC-CCcCCCCcCCcCCHHHHhCCceEEEEEEeeEEE
Confidence            588886 4444442  279999999998 89999998743



>1n3h_A SHC transforming protein; free protein, beta sandwich, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.2 PDB: 1oy2_A 2l1c_A* 1shc_A* Back     alignment and structure
>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query67
d1wj1a_156 Numb {Mouse (Mus musculus) [TaxId: 10090]} 95.71
d1ddma_135 Numb {Fruit fly (Drosophila melanogaster) [TaxId: 94.72
d1oy2a_ 191 Shc adaptor protein {Human (Homo sapiens) [TaxId: 94.53
d1aqca_ 166 X11 {Human (Homo sapiens) [TaxId: 9606]} 90.57
d2dkqa1147 Tensin {Human (Homo sapiens) [TaxId: 9606]} 90.29
>d1wj1a_ b.55.1.2 (A:) Numb {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Numb
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.71  E-value=0.00099  Score=40.64  Aligned_cols=22  Identities=23%  Similarity=0.208  Sum_probs=19.7

Q ss_pred             cCCchhhhhhc-ceEeeeechhh
Q psy6845          21 PMHSEEAFQHG-ITFQAKTRQKN   42 (67)
Q Consensus        21 PLHnEeAFqHG-I~FqAKyig~~   42 (67)
                      .+||+++++|| ++|+|||.|+.
T Consensus        14 w~~~~~~~~~~~~~f~v~YLGs~   36 (156)
T d1wj1a_          14 WQTDEEGVRTGKCSFPVKYLGHV   36 (156)
T ss_dssp             SHHHHHHTTTTCCEEEEEEEEEE
T ss_pred             CCCCHHHhccCCeeEEEEEEEEE
Confidence            67999999999 77999999974



>d1ddma_ b.55.1.2 (A:) Numb {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1oy2a_ b.55.1.2 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aqca_ b.55.1.2 (A:) X11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dkqa1 b.55.1.2 (A:8-154) Tensin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure