Psyllid ID: psy6874

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500----
Protein Sequence
MKLILKERSSTSQENPNMWLGGAMEALKAIAFVCDIITYPVYLFLQRPWEKKSLSSKKKAEIISKDNKSVTIRSISGPQENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNGL
Secondary Structure (PSIPRED)
cHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEccccccccccccccEEcEEccccEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHccccEEEEccccHHHHHHHHcccccccEEEEEccccccccccccccccEEEEHHHHHHHcHHccccccccccccccEEEEEEccccccccccEEEcHHHHHHHHHHcccccccccccEEEEEccHHHHHHHHHHHHHHHHccEEEEEccccccccccccccccccccccccccEEEccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHccccEEEccHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEcccccccccccccEEEcccccccccccccccccHHHHHHHHHHHHcccccccccEHEEcccccccccccEEEEEEcccEEEEcHHHHHHHHHHHHHHHHHcccccccEEEEEEccHHHHHHHHHHHHHcccEEEEHHHHccHHHHHHHEcccEEEEEEEcHHHHHHHHHHHHccccEEEEEEEcccccccccccccccEEEEEHHHHHHHcccccccccccccccccEEEEEEEccccccccEEEEEcHHHHHHHHHHHHHcccccccEEEEHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccHHHHccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHccccEEEccccccccccEEEEcccccccccEccc
Coil and Loop (DISEMBL)
MKLILKersstsqenpnmWLGGAMEALKAIAFVCDiitypvylflqrpwekkslsskKKAEIIskdnksvtirsisgpqenhIRLIRDGVDTMEKVLRYVVTRfsdqrclgTRQILaeedekqpngrifkkyvmgdyewrsfnqvNDEAEAFGKGLrslgqeprhnvVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDllpkfrnilkltprvstliymedqltstdttnfkqgieivpfKQIVKRgsesgsryegspptpkdtAIIMytsgstgtpkgvvLTHDNMISTLKAFSDavhiepndvflgyLPLAHVFELLSESVCLLCGVaigystpltmidtsskikrgtkgdasvlhptaltavPLILDRIYKgvhekvsraspfKRALFAFAFEYKRKWakrgfrcplidkvvfgqtkkllgGRVRLilsggaplspdthELIKVCLCEKviqgygltettsCATVMHLNDmgninsngl
Flexible Loop (DISEMBL)
mklilkersstsqenpnMWLGGAMEALKAIAFVCDIITYPVYLFLQRpwekkslsskkkaeiiskdnksvtirsisgpqenhirlirDGVDTMEKVLRYVVtrfsdqrclgtrqilaeedekqpngriFKKYVMGDYEWRSFNQVNDEAEAFGKglrslgqeprHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQltstdttnfkqgieivpfkqivkrgsesgsryegspptpkDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRgtkgdasvlhptaltavplILDRIYKGVHekvsraspfkRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNGL
Low Complexity Region (SEG)
MKLILKERSSTSQENPNMWLGGAMEALKAIAFVCDIITYPVYLFLQRPWekkslsskkkaeiiskDNKSVTIRSISGPQENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKrgsesgsryegsPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNGL
Disordered region (IsUnstruct)
*****************MWLGGAMEALKAIAFVCDIITYPVYLFLQRPW*******************************NHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAE******NGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIV********************AIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLN**********
Disordered Region (DISOPRED)
*****************MWLGGAMEALKAIAFVCDIITYPVYLFLQR**************************SISGPQENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSE********PPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNGL
Disordered Region (DISEMBL)
MKLILKERSSTSQENPNMWLGGAMEALKAIAFVCDIITYPVYLFLQRPWE***********IISKDNKSVTIRSISGPQENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKR*************TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNGL
Disordered Region (DISPRO)
*KL*LKERS**SQENPNMWLGGAMEALKAIAFVCDIITYPVYLFLQRPWEKKSLSSKKKAEIISKDNKSVTIRSISGPQENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNGL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLILKERSSTSQENPNMWLGGAMEALKAIAFVCDIITYPVYLFLQRPWEKKSLSSKKKAEIISKDNKSVTIRSISGPQENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	504	2.2.26 [Sep-21-2011]
Q9CZW4	720	Long-chain-fatty-acid--Co	yes	N/A	0.900	0.630	0.455	1e-111
Q63151	720	Long-chain-fatty-acid--Co	yes	N/A	0.900	0.630	0.451	1e-111
O95573	720	Long-chain-fatty-acid--Co	yes	N/A	0.900	0.630	0.449	1e-110
Q5R668	720	Long-chain-fatty-acid--Co	yes	N/A	0.900	0.630	0.447	1e-109
O60488	711	Long-chain-fatty-acid--Co	no	N/A	0.912	0.646	0.434	1e-109
O35547	670	Long-chain-fatty-acid--Co	no	N/A	0.803	0.604	0.465	1e-109
Q9QUJ7	711	Long-chain-fatty-acid--Co	no	N/A	0.900	0.638	0.435	1e-108
Q9CAP8	691	Long chain acyl-CoA synth	yes	N/A	0.793	0.578	0.409	1e-85
Q9SJD4	720	Long chain acyl-CoA synth	no	N/A	0.825	0.577	0.396	1e-84
O60135	676	Long-chain-fatty-acid--Co	yes	N/A	0.829	0.618	0.332	2e-60

>sp|Q9CZW4|ACSL3_MOUSE Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculus GN=Acsl3 PE=2 SV=2

 Score =  403 bits (1036), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/463 (45%), Positives = 292/463 (63%), Gaps = 9/463 (1%)

Query: 36  IITYPVYLFLQRPWEKKSLSSKKKAEIISKDNKSVTIRSISGPQENHIRLIRDGVDTMEK 95
           I+TY  + FL    ++K    K K      D+   +I S+ G       ++  G DT++K
Sbjct: 35  ILTYIPFYFLCESKQEKPNQIKAKPVSSKPDSAYRSINSVDGLAS----VLYPGCDTLDK 90

Query: 96  VLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKG 155
           V  Y   +F ++R LGTR+IL EEDE QPNG+IFKK ++G Y W S+  V   A  FG G
Sbjct: 91  VFMYAKNKFKNKRLLGTREILNEEDEIQPNGKIFKKVILGHYNWLSYEDVFIRALDFGNG 150

Query: 156 LRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIV 215
           L+ LGQ+P+ N+ IF ETRAEWMIAAQACF  N  +VT+YATLG  AI HG+NETEV  +
Sbjct: 151 LQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNETEVTNI 210

Query: 216 ITTHDLLP-KFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESG- 273
           IT+ +LL  K ++I+ L PR+  +I ++ +  +   + F +G+ +     +   G ++  
Sbjct: 211 ITSKELLQTKLKDIVSLVPRLRHIITVDGKPPTW--SEFPKGVIVHTMAAVQALGVKANV 268

Query: 274 SRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV-HIEPNDVFLGYL 332
            +   S P P D A+IMYTSGSTG PKGV+++H N+I+++   +  +  +   DV++GYL
Sbjct: 269 EKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNIIASITGMARRIPRLGEEDVYIGYL 328

Query: 333 PLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILD 392
           PLAHV EL +E VCL  G  IGYS+P T+ D SSKIK+G+KGD SVL PT + AVP I+D
Sbjct: 329 PLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSVLKPTLMAAVPEIMD 388

Query: 393 RIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLI 452
           RIYK V  KV+  S F+R LF  A+ YK +   +G   PL D+ VF   ++LLGG +RL+
Sbjct: 389 RIYKNVMNKVNEMSAFQRNLFILAYNYKMEQISKGCSTPLCDRFVFRNVRRLLGGNIRLL 448

Query: 453 LSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
           L GGAPLS  T   + +C C  V QGYGLTE+T   T+  + D
Sbjct: 449 LCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGTITEVWD 491

Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 has mainly an anabolic role in energy metabolism (By similarity). Required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins) (By similarity). Mediates hepatic lipogenesis (By similarity). Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3

>sp|Q63151|ACSL3_RAT Long-chain-fatty-acid--CoA ligase 3 OS=Rattus norvegicus GN=Acsl3 PE=1 SV=1

 Score =  401 bits (1030), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/463 (45%), Positives = 292/463 (63%), Gaps = 9/463 (1%)

Query: 36  IITYPVYLFLQRPWEKKSLSSKKKAEIISKDNKSVTIRSISGPQENHIRLIRDGVDTMEK 95
           I+TY  + FL    ++K    K K      D+   ++ S+ G       ++  G DT++K
Sbjct: 35  ILTYIPFYFLCESKQEKPNHIKAKPVSSKPDSAYRSVNSMDGLAS----VLYPGCDTLDK 90

Query: 96  VLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKG 155
           V  Y   +F D+R LGTR+IL EEDE QPNG++FKK ++G Y W S+  V   A  FG G
Sbjct: 91  VFMYAKNKFKDKRLLGTREILNEEDEIQPNGKVFKKVILGHYNWLSYEDVFIRALDFGNG 150

Query: 156 LRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIV 215
           L+ LGQ+P+ N+ IF ETRAEWMIAAQACF  N  +VT+YATLG  AI HG+NETEV  +
Sbjct: 151 LQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNETEVTNI 210

Query: 216 ITTHDLLP-KFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESG- 273
           IT+ +LL  K ++I+ L PR+  +I ++ +  +   + F +G+ +     +   G ++  
Sbjct: 211 ITSKELLQTKLKDIVSLVPRLRHIITVDGKPPTW--SEFPKGVIVHTMAAVQALGVKADV 268

Query: 274 SRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV-HIEPNDVFLGYL 332
            +   S P P D A+IMYTSGSTG PKGV+++H N+I+++   +  +  +   DV++GYL
Sbjct: 269 DKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNIIASITGMARRIPRLGEEDVYIGYL 328

Query: 333 PLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILD 392
           PLAHV EL +E VCL  G  IGYS+P T+ D SSKIK+G+KGD SVL PT + AVP I+D
Sbjct: 329 PLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSVLKPTLMAAVPEIMD 388

Query: 393 RIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLI 452
           RIYK V  KV+  S F+R LF  A+ YK +   +G   PL D+ VF   ++LLGG +R++
Sbjct: 389 RIYKNVMNKVNEMSAFQRNLFILAYNYKMEQISKGCSTPLCDRFVFRNVRRLLGGNIRVL 448

Query: 453 LSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
           L GGAPLS  T   + +C C  V QGYGLTE+T   T+  + D
Sbjct: 449 LCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGTITEVWD 491

Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 is required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins) (By similarity). Has mainly an anabolic role in energy metabolism. Mediates hepatic lipogenesis. Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates. Both isoforms exhibit the same level of activity.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O95573|ACSL3_HUMAN Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapiens GN=ACSL3 PE=1 SV=3

 Score =  398 bits (1023), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/463 (44%), Positives = 290/463 (62%), Gaps = 9/463 (1%)

Query: 36  IITYPVYLFLQRPWEKKSLSSKKKAEIISKDNKSVTIRSISGPQENHIRLIRDGVDTMEK 95
           I+TY  + F     ++KS   K K      D+   ++ S+ G       ++  G DT++K
Sbjct: 35  ILTYIPFYFFSESRQEKSNRIKAKPVNSKPDSAYRSVNSLDGLAS----VLYPGCDTLDK 90

Query: 96  VLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKG 155
           V  Y   +F ++R LGTR++L EEDE QPNG+IFKK ++G Y W S+  V   A  FG G
Sbjct: 91  VFTYAKNKFKNKRLLGTREVLNEEDEVQPNGKIFKKVILGQYNWLSYEDVFVRAFNFGNG 150

Query: 156 LRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIV 215
           L+ LGQ+P+ N+ IF ETRAEWMIAAQACF  N  +VT+YATLG  AI H +NETEV  +
Sbjct: 151 LQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHALNETEVTNI 210

Query: 216 ITTHDLLP-KFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGS 274
           IT+ +LL  K ++I+ L PR+  +I ++ +  +   + F +GI +     +   G+++  
Sbjct: 211 ITSKELLQTKLKDIVSLVPRLRHIITVDGKPPTW--SEFPKGIIVHTMAAVEALGAKASM 268

Query: 275 RYE-GSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV-HIEPNDVFLGYL 332
             +  S P P D A+IMYTSGSTG PKGV+++H N+I+ +   ++ +  +   DV++GYL
Sbjct: 269 ENQPHSKPLPSDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMAERIPELGEEDVYIGYL 328

Query: 333 PLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILD 392
           PLAHV EL +E VCL  G  IGYS+P T+ D SSKIK+G+KGD S+L PT + AVP I+D
Sbjct: 329 PLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSMLKPTLMAAVPEIMD 388

Query: 393 RIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLI 452
           RIYK V  KVS  S F+R LF  A+ YK +   +G   PL D  VF + + LLGG +RL+
Sbjct: 389 RIYKNVMNKVSEMSSFQRNLFILAYNYKMEQISKGRNTPLCDSFVFRKVRSLLGGNIRLL 448

Query: 453 LSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
           L GGAPLS  T   + +C C  V QGYGLTE+    T+  + D
Sbjct: 449 LCGGAPLSATTQRFMNICFCCPVGQGYGLTESAGAGTISEVWD 491

Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 mediates hepatic lipogenesis (By similarity). Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates (By similarity). Has mainly an anabolic role in energy metabolism. Required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins).

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q5R668|ACSL3_PONAB Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abelii GN=ACSL3 PE=2 SV=2

 Score =  397 bits (1019), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/463 (44%), Positives = 290/463 (62%), Gaps = 9/463 (1%)

Query: 36  IITYPVYLFLQRPWEKKSLSSKKKAEIISKDNKSVTIRSISGPQENHIRLIRDGVDTMEK 95
           I+TY  + F     ++KS   K K      D+   ++ S+ G       ++  G DT++K
Sbjct: 35  ILTYIPFYFFSESRQEKSNRIKAKPVNSKPDSAYRSVNSLDGLAS----VLYPGCDTLDK 90

Query: 96  VLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKG 155
           V  Y   +F ++R LGTR++L EEDE QPNG+IFKK ++G Y W S+  V   A  FG G
Sbjct: 91  VFTYAKNKFKNKRLLGTREVLNEEDEVQPNGKIFKKVILGQYNWLSYEDVFVRAFNFGNG 150

Query: 156 LRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIV 215
           L+ LGQ+P+ N+ IF ETRAEWMIAAQACF  N  +VT+YATLG  AI H +NETEV  +
Sbjct: 151 LQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHALNETEVTNI 210

Query: 216 ITTHDLLP-KFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGS 274
           IT+ +LL  K ++I+ L PR+  +I ++ +  +   + F +GI +     +   G+++  
Sbjct: 211 ITSKELLQTKLKDIVSLVPRLRHIITVDGKPPTW--SEFPKGIIVHTMAAVEALGAKASM 268

Query: 275 RYE-GSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV-HIEPNDVFLGYL 332
             +  S P P D A+IMYTSGSTG PKGV+++H N+I+ +   ++ +  +   DV++GYL
Sbjct: 269 ENQPHSKPLPSDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMAERIPELGEEDVYIGYL 328

Query: 333 PLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILD 392
           PLAHV EL +E VCL  G  IGYS+P T+ D SSKIK+G+KGD S+L PT + AVP I+D
Sbjct: 329 PLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSMLKPTLMAAVPEIMD 388

Query: 393 RIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLI 452
           RIYK V  KVS  S F+R LF  A+ YK +   +G   PL +  VF + + LLGG +RL+
Sbjct: 389 RIYKNVMNKVSEMSSFQRNLFILAYNYKMEQISKGRNTPLCNSFVFRKVRSLLGGNIRLL 448

Query: 453 LSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
           L GGAPLS  T   + +C C  V QGYGLTE+    T+  + D
Sbjct: 449 LCGGAPLSATTQRFMNICFCCPVGQGYGLTESAGAGTISEVWD 491

Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 has mainly an anabolic role in energy metabolism (By similarity). Required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins) (By similarity). Mediates hepatic lipogenesis (By similarity). Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O60488|ACSL4_HUMAN Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapiens GN=ACSL4 PE=1 SV=2

 Score =  395 bits (1016), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/470 (43%), Positives = 301/470 (64%), Gaps = 10/470 (2%)

Query: 30  IAFVCDIITYPVYLFLQRPWEKKSLSSKKKAEIISKDNKSVTIRSISGPQENHIRLIR-D 88
           I     +I  P Y FL    +K +++ + KA+  S D      RS++    + + +I   
Sbjct: 19  ITIYSALIFIPWY-FLTNAKKKNAMAKRIKAKPTS-DKPGSPYRSVT--HFDSLAVIDIP 74

Query: 89  GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDE 148
           G DT++K+  + V++F  +  LGTR+IL+EE+E QPNG++FKK ++G+Y+W ++ +VN  
Sbjct: 75  GADTLDKLFDHAVSKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWMNYLEVNRR 134

Query: 149 AEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGIN 208
              FG GL +LG +P++ + IF ETRAEWMIAAQ CFK N P+VT+YATLG+EA+ HG+N
Sbjct: 135 VNNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKEAVVHGLN 194

Query: 209 ETEVNIVITTHDLL-PKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVK 267
           E+E + +IT+ +LL  K +  L     V  +IY++++  + +   + +G EI   + + +
Sbjct: 195 ESEASYLITSVELLESKLKTALLDISCVKHIIYVDNK--AINKAEYPEGFEIHSMQSVEE 252

Query: 268 RGSESGSR-YEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV-HIEPN 325
            GS   +     S PTP D AI+MYTSGSTG PKGV++ H N+I+ +    + +  + P 
Sbjct: 253 LGSNPENLGIPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGPK 312

Query: 326 DVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALT 385
           D ++GYLPLAHV EL +E  C   G  IGYS+PLT+ D SSKIK+G+KGD +VL PT + 
Sbjct: 313 DTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLMA 372

Query: 386 AVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLL 445
           AVP I+DRIYK V  KV   +  ++ LF   ++YK +  K+G+  PL + ++F + K LL
Sbjct: 373 AVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKKGYDAPLCNLLLFKKVKALL 432

Query: 446 GGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
           GG VR++LSGGAPLSP TH  + VC C  + QGYGLTE+    TV  + D
Sbjct: 433 GGNVRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTVTEVTD 482

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O35547|ACSL4_RAT Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norvegicus GN=Acsl4 PE=2 SV=1

 Score =  395 bits (1015), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/410 (46%), Positives = 276/410 (67%), Gaps = 5/410 (1%)

Query: 89  GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDE 148
           G DT++K+  + V +F  +  LGTR+IL+EE+E QPNG++FKK ++G+Y+W ++ +VN  
Sbjct: 34  GADTLDKLFDHAVAKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWINYLEVNCR 93

Query: 149 AEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGIN 208
              FG GL +LG +P++ + IF ETRAEWMIAAQ CFK N P+VT+YATLG+EA+ HG+N
Sbjct: 94  VNNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKEAVVHGLN 153

Query: 209 ETEVNIVITTHDLL-PKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVK 267
           E+E + +IT+ +LL  K +  L     V  +IY++++  + +   + +G+EI   + + +
Sbjct: 154 ESEASYLITSVELLESKLKAALLDINCVKHIIYVDNK--TINRAEYPEGLEIHSMQSVEE 211

Query: 268 RGSE-SGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV-HIEPN 325
            GS+   S    S PTP D AI+MYTSGSTG PKGV++ H N+I+ +    + +  + P 
Sbjct: 212 LGSKPENSSIPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGPK 271

Query: 326 DVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALT 385
           D ++GYLPLAHV EL +E  C   G  IGYS+PLT+ D SSKIK+G+KGD +VL PT + 
Sbjct: 272 DTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLMA 331

Query: 386 AVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLL 445
           AVP I+DRIYK V  KV   +  ++ LF   ++YK +  K+G+  PL + ++F + K LL
Sbjct: 332 AVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKKGYDAPLCNLILFKKVKALL 391

Query: 446 GGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
           GG VR++LSGGAPLSP TH  + VC C  + QGYGLTE+    TV  + D
Sbjct: 392 GGNVRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTVTEVTD 441

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9QUJ7|ACSL4_MOUSE Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculus GN=Acsl4 PE=2 SV=2

 Score =  393 bits (1009), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/464 (43%), Positives = 300/464 (64%), Gaps = 10/464 (2%)

Query: 36  IITYPVYLFLQRPWEKKSLSSKKKAEIISKDNKSVTIRSISGPQENHIRLIR-DGVDTME 94
           +I  P Y FL    +K +++ + KA+  S D      RS++    + + +I   G DT++
Sbjct: 25  LIFIPWY-FLTNAKKKNAMAKRIKAKPTS-DKPGSPYRSVT--HFDSLAVIDIPGADTLD 80

Query: 95  KVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGK 154
           K+  + V +F  +  LGTR+IL+EE+E QPNG++FKK ++G+Y+W ++ +VN     FG 
Sbjct: 81  KLFDHAVAKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWINYLEVNCRVNNFGS 140

Query: 155 GLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNI 214
           GL +LG +P++ + IF ETRAEWMIAAQ CFK N P+VT+YATLG EA+ HG+NE+E + 
Sbjct: 141 GLTALGLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGREAVVHGLNESEASY 200

Query: 215 VITTHDLL-PKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESG 273
           +IT+ +LL  K +  L     V  +IY++++  + +   + +G+EI   + + + G++  
Sbjct: 201 LITSVELLESKLKAALVDINCVKHIIYVDNK--TINRAEYPEGLEIHSMQSVEELGAKPE 258

Query: 274 S-RYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV-HIEPNDVFLGY 331
           +     S PTP D AI+MYTSGSTG PKGV++ H N+I+ +    + +  + P D ++GY
Sbjct: 259 NLSVPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGPKDTYIGY 318

Query: 332 LPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLIL 391
           LPLAHV EL +E  C   G  IGYS+PLT+ D SSKIK+G+KGD +VL PT + AVP I+
Sbjct: 319 LPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLMAAVPEIM 378

Query: 392 DRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRL 451
           DRIYK V  KV   +  ++ LF   ++YK +  K+G+  PL + ++F + K LLGG VR+
Sbjct: 379 DRIYKNVMSKVQEMNYVQKTLFKIGYDYKLEQIKKGYDAPLCNLILFKKVKALLGGNVRM 438

Query: 452 ILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
           +LSGGAPLSP TH  + VC C  + QGYGLTE+    TV  + D
Sbjct: 439 MLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTVTEVTD 482

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9CAP8|LACS9_ARATH Long chain acyl-CoA synthetase 9, chloroplastic OS=Arabidopsis thaliana GN=LACS9 PE=2 SV=1

 Score =  317 bits (812), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 169/413 (40%), Positives = 243/413 (58%), Gaps = 13/413 (3%)

Query: 90  VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEA 149
           + T+ ++        SD+  LGTR++++ E E   +G+ F+K  +GDYEW +F +  +  
Sbjct: 57  ISTLPELFEISCNAHSDRVFLGTRKLISREIETSEDGKTFEKLHLGDYEWLTFGKTLEAV 116

Query: 150 EAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINE 209
             F  GL  +G +    V IFA+TR EW I+ Q CF++N+ VVTIY++LGEEA+ H +NE
Sbjct: 117 CDFASGLVQIGHKTEERVAIFADTREEWFISLQGCFRRNVTVVTIYSSLGEEALCHSLNE 176

Query: 210 TEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRG 269
           TEV  VI     L K  +I +    V  +I M+D+  S   +N+        F  + K G
Sbjct: 177 TEVTTVICGSKELKKLMDISQQLETVKRVICMDDEFPSDVNSNWMA----TSFTDVQKLG 232

Query: 270 SESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV-HIEPNDVF 328
            E  +  + + P   D A+IMYTSGSTG PKGV++TH N+++T+ A    V  +   D++
Sbjct: 233 RE--NPVDPNFPLSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGKRDIY 290

Query: 329 LGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVP 388
           + YLPLAH+ EL +ESV    G AIGY +PLT+ DTS+KIK+GTKGD + L PT +TAVP
Sbjct: 291 MAYLPLAHILELAAESVMATIGSAIGYGSPLTLTDTSNKIKKGTKGDVTALKPTIMTAVP 350

Query: 389 LILDRIYKGVHEKVSRASPFKRALFAFAFEYKRK------WAKRGFRCPLIDKVVFGQTK 442
            ILDR+  GV +KV       + LF FA+  +        +   G    L D +VF + +
Sbjct: 351 AILDRVRDGVRKKVDAKGGLSKKLFDFAYARRLSAINGSWFGAWGLEKLLWDVLVFRKIR 410

Query: 443 KLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
            +LGG++R +LSGGAPLS DT   I +C+   + QGYGLTET +  T     D
Sbjct: 411 AVLGGQIRYLLSGGAPLSGDTQRFINICVGAPIGQGYGLTETCAGGTFSEFED 463

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9SJD4|LACS8_ARATH Long chain acyl-CoA synthetase 8 OS=Arabidopsis thaliana GN=LACS8 PE=2 SV=1

 Score =  313 bits (803), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 174/439 (39%), Positives = 255/439 (58%), Gaps = 23/439 (5%)

Query: 71  TIRSISGPQENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFK 130
           T+R    P+   + +  +G  TM  +      ++S  R LGTR+ + +E     +GR F+
Sbjct: 63  TMRHARAPE--LVDVPWEGAATMPALFEQSCKKYSKDRLLGTREFIDKEFITASDGRKFE 120

Query: 131 KYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIP 190
           K  +G+Y+W+S+ +V +    F  GL ++G      V IF++TRAEW IA Q CF+Q+I 
Sbjct: 121 KLHLGEYKWQSYGEVFERVCNFASGLVNVGHNVDDRVAIFSDTRAEWFIAFQGCFRQSIT 180

Query: 191 VVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMED---QLTS 247
           VVTIYA+LGEEA+ + +NET V+ +I     L K   I      V  +IY+E+    + S
Sbjct: 181 VVTIYASLGEEALIYSLNETRVSTLICDSKQLKKLSAIQSSLKTVKNIIYIEEDGVDVAS 240

Query: 248 TDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSP--PTPKDTAIIMYTSGSTGTPKGVVLT 305
           +D  +    I +    ++ K G ++  +    P  P+    A+IM+TSGSTG PKGV++T
Sbjct: 241 SDVNSMGD-ITVSSISEVEKLGQKNAVQ----PILPSKNGVAVIMFTSGSTGLPKGVMIT 295

Query: 306 HDNMISTLKAFSDAV-HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDT 364
           H N+++T       V  ++ ND ++ YLPLAHVFEL +E V    G AIGY + +T+ DT
Sbjct: 296 HGNLVATAAGVMKVVPKLDKNDTYIAYLPLAHVFELEAEIVVFTSGSAIGYGSAMTLTDT 355

Query: 365 SSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWA 424
           S+K+K+GTKGD S L PT +TAVP ILDR+ +GV +KV       + LF FA  YKR+ A
Sbjct: 356 SNKVKKGTKGDVSALKPTIMTAVPAILDRVREGVLKKVEEKGGMAKTLFDFA--YKRRLA 413

Query: 425 --------KRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVI 476
                     G    L D +VF + + +LGG +R +L GGAPLSPD+   I +C+   + 
Sbjct: 414 AVDGSWFGAWGLEKMLWDALVFKKIRAVLGGHIRFMLVGGAPLSPDSQRFINICMGSPIG 473

Query: 477 QGYGLTETTSCATVMHLND 495
           QGYGLTET + AT    +D
Sbjct: 474 QGYGLTETCAGATFSEWDD 492

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O60135|LCF1_SCHPO Long-chain-fatty-acid--CoA ligase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lcf1 PE=3 SV=1

 Score =  234 bits (596), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 148/445 (33%), Positives = 231/445 (51%), Gaps = 27/445 (6%)

Query: 65  KDNKSVTIRSISGPQENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAE------ 118
           K+++S   R+ + P ++ +    D V T+  V R+ V +F +++ +G R ++ E      
Sbjct: 12  KEHESAIYRNANFP-DHLVETYSDDVHTLFDVFRHSVKQFGNKKAMGYRNLVKEHVETKM 70

Query: 119 -----EDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAET 173
                + EK+   + +  + + DY + SFN + D+A  +   LR LG        ++A T
Sbjct: 71  VTKVVDGEKKEVPKSWSYFELSDYNYLSFNDIYDKALRYAGALRKLGLNKGDKFELYAPT 130

Query: 174 RAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTP 233
            A W++ A+AC  Q++ +VT Y TLGEE + H + E+ V  + T   LL    N LK   
Sbjct: 131 SAFWLLTAEACLSQSMTIVTAYDTLGEEGLLHSLRESGVRGMYTEGHLLKTLVNPLKEIE 190

Query: 234 RVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAI--IMY 291
            +  +IY  D        + K   EI P  +++K            P  P    I  IMY
Sbjct: 191 SLEVIIYRND----AKEEDIKTIQEIRPNLKLIKFADFEKMSPPVEPDPPSPEEICCIMY 246

Query: 292 TSGSTGTPKGVVLTHDNMISTLKAFSDAV-HIEPNDVFLGYLPLAHVFELLSESVCLLCG 350
           TSGSTG PKGV+L+H NM++ + A    V  +   D  L YLPLAH+ E   E++CL  G
Sbjct: 247 TSGSTGLPKGVILSHKNMVAIVTAIVKHVPEVTSKDYLLAYLPLAHILEFAFENICLAWG 306

Query: 351 VAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKR 410
             IGY+   T++DT+    R  KGD +   PT +  VP + + + KG+  K++ AS  KR
Sbjct: 307 GTIGYANVRTLVDTNC---RNCKGDINTFRPTIMVGVPAVWEMVRKGIMSKLNAASAVKR 363

Query: 411 ALFAFAFEYKRKWAKRGF--RCPLIDKVVFGQTKKL-LGGRVRLILSGGAPLSPDTHELI 467
           ++F  A+  K K  +      C ++D  VF + + +  GGR+R  LSGG+ LSPDT   +
Sbjct: 364 SVFWTAYYTKAKLMRHNLPGSC-VLDTAVFNKIRSMGTGGRLRYTLSGGSALSPDTKRFL 422

Query: 468 KVCLCEKVIQGYGLTETTSCATVMH 492
            + LC  +I GYGLTE ++ A V +
Sbjct: 423 SIVLCPMLI-GYGLTEISAAAMVQN 446

Esterification, concomitant with transport, of exogenous long-chain fatty acids into metabolically active CoA thioesters for subsequent degradation or incorporation into phospholipids. It may supplement intracellular myristoyl-CoA pools from exogenous myristate. Preferentially acts on C12:0-C16:0 fatty acids with myristic and pentadecanic acid (C15:0) having the highest activities (By similarity). Appears to play a role in the maintenance of cell viability during stationary phase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	504
242021237	703	Long-chain-fatty-acid--CoA ligase, putat	0.944	0.677	0.682	0.0
307168145	707	Long-chain-fatty-acid--CoA ligase 3 [Cam	0.944	0.673	0.671	0.0
332020834	702	Long-chain-fatty-acid--CoA ligase 3 [Acr	0.954	0.685	0.645	0.0
307210093	715	Long-chain-fatty-acid--CoA ligase 4 [Har	0.954	0.672	0.633	0.0
322795006	707	hypothetical protein SINV_10300 [Solenop	0.944	0.673	0.644	0.0
193587221	709	PREDICTED: long-chain-fatty-acid--CoA li	0.936	0.665	0.647	0.0
328721223	712	PREDICTED: long-chain-fatty-acid--CoA li	0.936	0.662	0.647	0.0
383858798	715	PREDICTED: long-chain-fatty-acid--CoA li	0.954	0.672	0.627	0.0
289742803	714	acyl-CoA synthetase [Glossina morsitans	0.948	0.669	0.622	0.0
195122946	715	GI18805 [Drosophila mojavensis] gi|19391	0.948	0.668	0.614	0.0

>gi|242021237|ref|XP_002431052.1| Long-chain-fatty-acid--CoA ligase, putative [Pediculus humanus corporis] gi|212516281|gb|EEB18314.1| Long-chain-fatty-acid--CoA ligase, putative [Pediculus humanus corporis]

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/479 (68%), Positives = 400/479 (83%), Gaps = 3/479 (0%)

Query: 17  NMWLGGAMEALKAIAFVCDIITYPVYLFLQRPWEKKSLSSKKKAEIISKDNKSVTIRSIS 76
           ++WL  A+ A+K +AFV DIITYPVYL + RPW+KKSLS+K +A+ IS + KS+T R+++
Sbjct: 3   SIWLESALGAIKVLAFVYDIITYPVYLLVNRPWDKKSLSNKVRAKPISVEEKSITYRNVN 62

Query: 77  GPQENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGD 136
           GPQ+ H  LIR+GVDTMEK+ R+V  R++ + CLGTR+ILAEEDE QPNGRIFKKYVMG+
Sbjct: 63  GPQKMHQLLIREGVDTMEKMFRFVSVRYNKKNCLGTRKILAEEDEVQPNGRIFKKYVMGN 122

Query: 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYA 196
           Y W+SF +V+  ++ FG+GL SLGQ PR  VV+FAETRAEWMIAA  CFKQNIPVVTIYA
Sbjct: 123 YVWQSFQEVDKMSKLFGRGLYSLGQLPRQPVVVFAETRAEWMIAAHGCFKQNIPVVTIYA 182

Query: 197 TLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQG 256
           TLGE+AIAHGINETEV++VIT+HDLL KF  IL+ TP+V T+I+MEDQL  TDTT F   
Sbjct: 183 TLGEDAIAHGINETEVSVVITSHDLLHKFHTILEKTPKVKTIIFMEDQLVKTDTTGF-DN 241

Query: 257 IEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAF 316
           IEI+ F ++V +G    +  E   P PKDTAIIMYTSGSTG PKGV+L+H+NM+STLKAF
Sbjct: 242 IEILSFSEVVNKGRFEENEVEA--PLPKDTAIIMYTSGSTGAPKGVLLSHENMLSTLKAF 299

Query: 317 SDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDA 376
           SDAV I P+DVF+GYLPLAHVFELL+ESVCLLCGV IGYSTPLTMIDTSSKIKRGTKGDA
Sbjct: 300 SDAVEIFPDDVFMGYLPLAHVFELLAESVCLLCGVPIGYSTPLTMIDTSSKIKRGTKGDA 359

Query: 377 SVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKV 436
           SVLHPT LT+VPLILDRI+KG++EKV +   F++ LF FA+ YK+KW  RGF  PLI+++
Sbjct: 360 SVLHPTCLTSVPLILDRIFKGINEKVCKGGVFRKKLFNFAYNYKKKWMNRGFDTPLINRI 419

Query: 437 VFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
           +FGQT+ L+GG+VRLILSGGAPL+PDTHE IK CLC +V+QGYGLTE+ S ATVM ++D
Sbjct: 420 IFGQTRHLMGGKVRLILSGGAPLAPDTHEFIKTCLCVQVLQGYGLTESCSSATVMDVHD 478

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307168145|gb|EFN61424.1| Long-chain-fatty-acid--CoA ligase 3 [Camponotus floridanus]

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/478 (67%), Positives = 389/478 (81%), Gaps = 2/478 (0%)

Query: 18  MWLGGAMEALKAIAFVCDIITYPVYLFLQRPWEKKSLSSKKKAEIISKDNKSVTIRSISG 77
            W+ GA+ A+KA+++V D++T+PVYL LQRPWEK+  S + KA  ISKD+  VT RS+  
Sbjct: 4   FWISGAIHAIKALSYVYDLLTFPVYLILQRPWEKRKASRRIKARPISKDDCQVTYRSVDP 63

Query: 78  PQENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDY 137
           P   HI L R+ VDT+EKVL +VV    D+RCLGTRQILAEEDE QPNGRIFKKY MG+Y
Sbjct: 64  PGSMHIMLEREKVDTLEKVLLWVVKMHGDKRCLGTRQILAEEDEPQPNGRIFKKYKMGEY 123

Query: 138 EWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYAT 197
           +W+SFN V+  A +FG+GL  LG +PR NVVIFAETRAEWMIAA ACFKQN  VVTIYAT
Sbjct: 124 KWKSFNDVDRLAISFGRGLVELGMKPRKNVVIFAETRAEWMIAAHACFKQNFTVVTIYAT 183

Query: 198 LGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGI 257
           LG+EAIAHGINETEV+ VIT+HDLLPKF+ +L++ P V T+IYMEDQL STDT  +K+G+
Sbjct: 184 LGDEAIAHGINETEVDTVITSHDLLPKFKRLLEMVPEVKTIIYMEDQLKSTDTKGYKEGV 243

Query: 258 EIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS 317
            +VPF  +VK G+E  S+   + P   DTAIIMYTSGSTG PKGV+L+H N+ISTLKAFS
Sbjct: 244 RLVPFSDVVKMGNE--SKASSTSPKSSDTAIIMYTSGSTGVPKGVILSHKNIISTLKAFS 301

Query: 318 DAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDAS 377
           DAV I  +DVFLG+LPLAHVFELL+ESVCLL GV IGYS+PLT+ID+SSKI+RG+KGDAS
Sbjct: 302 DAVQIRSDDVFLGFLPLAHVFELLAESVCLLNGVPIGYSSPLTLIDSSSKIQRGSKGDAS 361

Query: 378 VLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVV 437
           VLHPT LTAVPLILDRI KG++EKV ++ PF++A+F FA+EYK KW KRG+  PL DK +
Sbjct: 362 VLHPTCLTAVPLILDRISKGINEKVKKSGPFRQAIFNFAYEYKLKWTKRGYETPLFDKYI 421

Query: 438 FGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
           FG  K++LG RVRL+LSGGAPLSPDTH  +K+CLC  V QGYGLTET+SCATVM + D
Sbjct: 422 FGAAKQVLGSRVRLVLSGGAPLSPDTHNQVKLCLCVTVTQGYGLTETSSCATVMDMYD 479

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020834|gb|EGI61232.1| Long-chain-fatty-acid--CoA ligase 3 [Acromyrmex echinatior]

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/483 (64%), Positives = 387/483 (80%), Gaps = 2/483 (0%)

Query: 13  QENPNMWLGGAMEALKAIAFVCDIITYPVYLFLQRPWEKKSLSSKKKAEIISKDNKSVTI 72
           QE    W+ GA+ A+KA+++V D++T+PVYL LQRPWEK+  S + KA  ISK +  +T 
Sbjct: 7   QEMEGFWIYGAIHAIKALSYVYDLLTFPVYLILQRPWEKRKASRRIKARPISKYDNQITY 66

Query: 73  RSISGPQENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKY 132
           RS+  P+  HI L R+ VDT+EKVL  VV  + D++CLGTRQILAEEDE QPNGRIFKKY
Sbjct: 67  RSVDSPKSMHIMLEREKVDTLEKVLLCVVKMYGDKKCLGTRQILAEEDEPQPNGRIFKKY 126

Query: 133 VMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVV 192
            MG+Y+W+SF++V   A +FG+GL  LG +PR+N+VIFAETRAEWMIAA  CFKQN  VV
Sbjct: 127 KMGEYKWKSFSEVEKLASSFGRGLVELGMKPRNNIVIFAETRAEWMIAAHGCFKQNFTVV 186

Query: 193 TIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTN 252
           TIYATLG+EAIAHGINETEV+ VIT+H+LLPKF+ +L + P V  +IYMEDQL  T T  
Sbjct: 187 TIYATLGDEAIAHGINETEVDTVITSHELLPKFKRLLNMIPEVKKIIYMEDQLKPTSTKG 246

Query: 253 FKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST 312
           +K G++++PF  ++K G++S +    + P   DTAIIMYTSGSTG PKGV+L+H N+IST
Sbjct: 247 YKDGVQLLPFADVIKMGNKSTA--SANSPKNGDTAIIMYTSGSTGVPKGVLLSHKNIIST 304

Query: 313 LKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGT 372
           LKAFSDAV I  +DVFLG+LPLAHVFELL+ESVCLL GV IGYS+PLT+ID+SSKI+RG+
Sbjct: 305 LKAFSDAVEIRSDDVFLGFLPLAHVFELLAESVCLLTGVPIGYSSPLTLIDSSSKIQRGS 364

Query: 373 KGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPL 432
           KGDASVLHPT LTAVPLILDRI KG++EKV ++ PF++A+F FA+EYK KW KRG+  PL
Sbjct: 365 KGDASVLHPTCLTAVPLILDRISKGINEKVKKSGPFRQAIFNFAYEYKLKWTKRGYETPL 424

Query: 433 IDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMH 492
            DK +FG  K++LGGRVRL+LSGGAPLSPDTH  +K+CLC  V QGYGLTETTSCATVM 
Sbjct: 425 FDKYIFGAAKQVLGGRVRLVLSGGAPLSPDTHNQVKLCLCVTVTQGYGLTETTSCATVMD 484

Query: 493 LND 495
             D
Sbjct: 485 TYD 487

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307210093|gb|EFN86790.1| Long-chain-fatty-acid--CoA ligase 4 [Harpegnathos saltator]

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/483 (63%), Positives = 387/483 (80%), Gaps = 2/483 (0%)

Query: 13  QENPNMWLGGAMEALKAIAFVCDIITYPVYLFLQRPWEKKSLSSKKKAEIISKDNKSVTI 72
           QE    W+ GA+ A+KA+++V D++T+PVYL LQRPWEK+  S + KA  ISKD+ ++T 
Sbjct: 7   QEMEGFWISGAIHAIKALSYVYDLLTFPVYLILQRPWEKRKASRRIKARSISKDDTTITY 66

Query: 73  RSISGPQENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKY 132
           RS+  P   HI L R+ ++T+EK+  +VV   SD++C GTRQILAEEDE Q NGRIFKKY
Sbjct: 67  RSVDSPGPMHIMLEREKIETLEKMFLWVVKMHSDKKCFGTRQILAEEDETQSNGRIFKKY 126

Query: 133 VMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVV 192
            MG+Y+W+++ +V+  A +FG+GL  LG  PR N+VIFAETRAEWMIAA ACFKQN  VV
Sbjct: 127 RMGEYKWKTYQEVDRLASSFGRGLTELGMRPRKNIVIFAETRAEWMIAAHACFKQNFTVV 186

Query: 193 TIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTN 252
           TIYATLG+EAIAHGINETEV+ VIT+H+LLPKF+ +L + P V T+IYMEDQL  TDT  
Sbjct: 187 TIYATLGDEAIAHGINETEVDTVITSHELLPKFKRLLDMVPAVKTIIYMEDQLKPTDTKG 246

Query: 253 FKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST 312
           +K  +++VPF  ++K G+ES +     PP   DTAIIMYTSGSTG PKGV+L+H N+++T
Sbjct: 247 YKDTVQLVPFSDVIKMGNESST--SAIPPKGNDTAIIMYTSGSTGVPKGVLLSHKNILTT 304

Query: 313 LKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGT 372
           LKAF DAV I P+DVFLG+LPLAHVFELL+ESVCLL GV IGYS+PLT+ID+SSKI++G+
Sbjct: 305 LKAFCDAVEIRPDDVFLGFLPLAHVFELLAESVCLLTGVPIGYSSPLTLIDSSSKIQKGS 364

Query: 373 KGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPL 432
           KGDASVLHPT LTAVPLILDRI KG++EKV ++ PF++A+F FA++YK KW KRG+  PL
Sbjct: 365 KGDASVLHPTCLTAVPLILDRISKGINEKVKKSGPFRQAIFNFAYQYKLKWTKRGYETPL 424

Query: 433 IDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMH 492
            DK +FG  K++LGGRVRL+LSGGAPLSPDTH  +K+CLC  V QGYGLTET+SCATVM 
Sbjct: 425 FDKYIFGHAKQVLGGRVRLVLSGGAPLSPDTHNQVKLCLCITVTQGYGLTETSSCATVMD 484

Query: 493 LND 495
            +D
Sbjct: 485 EHD 487

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795006|gb|EFZ17862.1| hypothetical protein SINV_10300 [Solenopsis invicta]

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/478 (64%), Positives = 384/478 (80%), Gaps = 2/478 (0%)

Query: 18  MWLGGAMEALKAIAFVCDIITYPVYLFLQRPWEKKSLSSKKKAEIISKDNKSVTIRSISG 77
            W+ GA+ A+KA++++ D++T+PVYL LQRPWEK+  S + KA  ISKD   VT RS+  
Sbjct: 4   FWIYGAIHAIKALSYMYDLLTFPVYLILQRPWEKRKASRRIKARPISKDENQVTYRSVDS 63

Query: 78  PQENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDY 137
           P+  H+ L R+ VDT+EKVL +V     D+RCLGTRQILAEEDE QPNGRIFKKY MG+Y
Sbjct: 64  PKPMHVMLEREKVDTLEKVLLWVAKMHGDKRCLGTRQILAEEDEPQPNGRIFKKYKMGEY 123

Query: 138 EWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYAT 197
           +W+SF++V+  A +FG+GL  LG +PR N+VIFAETRAEWMIAA ACFKQN  VVTIYAT
Sbjct: 124 KWKSFSEVDKMAASFGRGLAELGMKPRQNIVIFAETRAEWMIAAHACFKQNFTVVTIYAT 183

Query: 198 LGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGI 257
           LG+EAIAHGINETEV+ VIT+H+LLPKF+ +L + P V  +IY+EDQL  T T  +K G+
Sbjct: 184 LGDEAIAHGINETEVDTVITSHELLPKFKRLLDMVPEVKKIIYLEDQLKPTSTKGYKDGV 243

Query: 258 EIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS 317
           +++PF  +VK G++S +    + P   DTAIIMYTSGSTG PKGV+L+H N++STLKAF 
Sbjct: 244 QLLPFSDVVKMGNKSSA--SANSPKSDDTAIIMYTSGSTGVPKGVLLSHKNILSTLKAFC 301

Query: 318 DAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDAS 377
           DAV I P+DVFLG+LPLAHVFELL+ESVCLL GV IGYS+PLT+ID+SSKI+RG+KGDAS
Sbjct: 302 DAVEIFPDDVFLGFLPLAHVFELLAESVCLLNGVPIGYSSPLTLIDSSSKIQRGSKGDAS 361

Query: 378 VLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVV 437
           VLHPT LTAVPLILDRI KG++EKV ++ PF++A+F FA+EYK KW KRG+  PL DK +
Sbjct: 362 VLHPTCLTAVPLILDRISKGINEKVKKSGPFRQAIFNFAYEYKLKWTKRGYETPLFDKYI 421

Query: 438 FGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
           FG  K++LGG VRL+LSGGAPLSPDTH  +K+CLC  V QGYGLTET+SCATVM   D
Sbjct: 422 FGAAKQVLGGHVRLVLSGGAPLSPDTHNQVKLCLCVTVTQGYGLTETSSCATVMDQYD 479

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193587221|ref|XP_001951102.1| PREDICTED: long-chain-fatty-acid--CoA ligase 3-like isoform 1 [Acyrthosiphon pisum]

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/474 (64%), Positives = 380/474 (80%), Gaps = 2/474 (0%)

Query: 24  MEALKAIAFVCDIITYPVYLFLQRPWEKKSLSSKKKAEIISKDNKSVTIRSISGPQENHI 83
           + A K I+F+ D+ITYPVYL LQ+PW KK  S + K++I   D+ ++ I+++S P  NH+
Sbjct: 7   LSAFKTISFIYDVITYPVYLILQQPWNKKQKSKQIKSDITKFDDNTIIIKTLSKPTSNHL 66

Query: 84  RLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFN 143
            L++D +DT++KV +Y V +++D  CLGTR +LAEEDE Q NGRIFKKYVMGDY W +F 
Sbjct: 67  TLVKDKIDTLQKVFQYAVNKYADSYCLGTRDVLAEEDEVQRNGRIFKKYVMGDYRWMTFT 126

Query: 144 QVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAI 203
           +V+  ++ FG  L SLGQ+P+ N+ IFAETRAEWMI+ Q CFKQNIPVVT+YATLGE+AI
Sbjct: 127 EVDKASDNFGNALVSLGQKPKENIAIFAETRAEWMISVQGCFKQNIPVVTLYATLGEDAI 186

Query: 204 AHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFK 263
           AHGINETEV IVIT+HDLLPKF+ IL+LTPRV TLIYMEDQL  T+T+ +K G+EI+ FK
Sbjct: 187 AHGINETEVTIVITSHDLLPKFKKILQLTPRVKTLIYMEDQLAKTNTSGYKDGVEIISFK 246

Query: 264 QIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIE 323
            ++KRGSE  +  E   P   D AI+MYTSGSTGTPKGV L+H N+ISTLKAF+DA+ I+
Sbjct: 247 SVLKRGSEY-TVTENHLPIKNDIAIVMYTSGSTGTPKGVNLSHTNLISTLKAFTDAISID 305

Query: 324 -PNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPT 382
              DVF+GYLPLAHVFELL E  CLLCG+ IGYSTPLTMIDTSSKIKRGTKGDA+VL PT
Sbjct: 306 YKRDVFMGYLPLAHVFELLGELACLLCGIRIGYSTPLTMIDTSSKIKRGTKGDAAVLRPT 365

Query: 383 ALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTK 442
            +TAVPLILDRIYKG++EKVS  +  ++ LF FAFEYKRKW +RGF+ PLI+ +VF +T 
Sbjct: 366 LMTAVPLILDRIYKGINEKVSSGTTLQKTLFKFAFEYKRKWMERGFQTPLINLLVFKKTS 425

Query: 443 KLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDM 496
            LLGGR+R IL GGAPLSP+TH LIK+CLCE V QGYGLTET+SC + M  +DM
Sbjct: 426 ALLGGRIRFILCGGAPLSPETHTLIKICLCENVQQGYGLTETSSCGSAMSRDDM 479

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328721223|ref|XP_003247245.1| PREDICTED: long-chain-fatty-acid--CoA ligase 3-like isoform 2 [Acyrthosiphon pisum]

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/474 (64%), Positives = 380/474 (80%), Gaps = 2/474 (0%)

Query: 24  MEALKAIAFVCDIITYPVYLFLQRPWEKKSLSSKKKAEIISKDNKSVTIRSISGPQENHI 83
           + A K I+F+ D+ITYPVYL LQ+PW KK  S + K++I   D+ ++ I+++S P  NH+
Sbjct: 10  LSAFKTISFIYDVITYPVYLILQQPWNKKQKSKQIKSDITKFDDNTIIIKTLSKPTSNHL 69

Query: 84  RLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFN 143
            L++D +DT++KV +Y V +++D  CLGTR +LAEEDE Q NGRIFKKYVMGDY W +F 
Sbjct: 70  TLVKDKIDTLQKVFQYAVNKYADSYCLGTRDVLAEEDEVQRNGRIFKKYVMGDYRWMTFT 129

Query: 144 QVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAI 203
           +V+  ++ FG  L SLGQ+P+ N+ IFAETRAEWMI+ Q CFKQNIPVVT+YATLGE+AI
Sbjct: 130 EVDKASDNFGNALVSLGQKPKENIAIFAETRAEWMISVQGCFKQNIPVVTLYATLGEDAI 189

Query: 204 AHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFK 263
           AHGINETEV IVIT+HDLLPKF+ IL+LTPRV TLIYMEDQL  T+T+ +K G+EI+ FK
Sbjct: 190 AHGINETEVTIVITSHDLLPKFKKILQLTPRVKTLIYMEDQLAKTNTSGYKDGVEIISFK 249

Query: 264 QIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIE 323
            ++KRGSE  +  E   P   D AI+MYTSGSTGTPKGV L+H N+ISTLKAF+DA+ I+
Sbjct: 250 SVLKRGSEY-TVTENHLPIKNDIAIVMYTSGSTGTPKGVNLSHTNLISTLKAFTDAISID 308

Query: 324 -PNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPT 382
              DVF+GYLPLAHVFELL E  CLLCG+ IGYSTPLTMIDTSSKIKRGTKGDA+VL PT
Sbjct: 309 YKRDVFMGYLPLAHVFELLGELACLLCGIRIGYSTPLTMIDTSSKIKRGTKGDAAVLRPT 368

Query: 383 ALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTK 442
            +TAVPLILDRIYKG++EKVS  +  ++ LF FAFEYKRKW +RGF+ PLI+ +VF +T 
Sbjct: 369 LMTAVPLILDRIYKGINEKVSSGTTLQKTLFKFAFEYKRKWMERGFQTPLINLLVFKKTS 428

Query: 443 KLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDM 496
            LLGGR+R IL GGAPLSP+TH LIK+CLCE V QGYGLTET+SC + M  +DM
Sbjct: 429 ALLGGRIRFILCGGAPLSPETHTLIKICLCENVQQGYGLTETSSCGSAMSRDDM 482

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858798|ref|XP_003704886.1| PREDICTED: long-chain-fatty-acid--CoA ligase 3-like [Megachile rotundata]

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/483 (62%), Positives = 386/483 (79%), Gaps = 2/483 (0%)

Query: 13  QENPNMWLGGAMEALKAIAFVCDIITYPVYLFLQRPWEKKSLSSKKKAEIISKDNKSVTI 72
           QE    W+ GA+ A+KA+++V D++T+PVYL LQRPWEKK  S + KA  I++D + +T 
Sbjct: 7   QEMEGFWISGAIHAIKALSYVYDLLTFPVYLILQRPWEKKKASRRIKARPIARDEQRITY 66

Query: 73  RSISGPQENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKY 132
           RS+  P   H+ L R+ VDT+EK++ +VV    +++CLGTRQILAEEDE QPNGRIFKKY
Sbjct: 67  RSVDPPGPMHVMLEREKVDTLEKMMTWVVNMHREKKCLGTRQILAEEDELQPNGRIFKKY 126

Query: 133 VMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVV 192
            MGDY+W+S+ +VN    +F +GLR LG   R N+VIFAETRAEWMIAA  CFKQN+ VV
Sbjct: 127 KMGDYKWKSYTEVNRLMTSFSRGLRELGLTTRKNIVIFAETRAEWMIAAYGCFKQNLTVV 186

Query: 193 TIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTN 252
           TIYATLG++AIAHGINETEV+ VIT+HDLLPKF+ +L   P + T+IYMEDQL  T+TT 
Sbjct: 187 TIYATLGDDAIAHGINETEVDTVITSHDLLPKFKRLLDKVPEIKTIIYMEDQLKPTNTTG 246

Query: 253 FKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST 312
           FK G+ ++ + +++K+G+ES +    SPP   DTAIIMYTSGSTG PKGV+L+H N+I+T
Sbjct: 247 FKDGVRLISYSEVIKKGNESNAPM--SPPQANDTAIIMYTSGSTGVPKGVLLSHTNIIAT 304

Query: 313 LKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGT 372
           +KAF DAV I  +DVFLG+LPLAHVFELL+ESVCLL GV IGYS+PLTMID+SSKI+RG+
Sbjct: 305 MKAFCDAVEIRSDDVFLGFLPLAHVFELLAESVCLLTGVPIGYSSPLTMIDSSSKIQRGS 364

Query: 373 KGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPL 432
           KGDASVLHPT LTAVPLILDRI KG++EKV ++  F++A+F FA++YK KWAKRG+  P 
Sbjct: 365 KGDASVLHPTCLTAVPLILDRISKGINEKVKKSGAFRQAIFHFAYQYKLKWAKRGYDTPF 424

Query: 433 IDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMH 492
            DK +FG  +++LGG+VRLIL GGAPL+PDTH  +K+CLC  V QGYGLTETTSCATVM 
Sbjct: 425 FDKYIFGAARQVLGGKVRLILCGGAPLTPDTHTQVKICLCVTVTQGYGLTETTSCATVMD 484

Query: 493 LND 495
           ++D
Sbjct: 485 VHD 487

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289742803|gb|ADD20149.1| acyl-CoA synthetase [Glossina morsitans morsitans]

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 299/480 (62%), Positives = 389/480 (81%), Gaps = 2/480 (0%)

Query: 17  NMWLGGAMEALKAIAFVCDIITYPVYLFLQRPWEKKSLSSKKKAEIISKDNKSVTIRSIS 76
           + W+ GA+ A+KAIAFVCDIIT PVYL LQRPW+++  S + KA++++KD+ +VT R+I 
Sbjct: 10  SFWIQGAIGAIKAIAFVCDIITLPVYLVLQRPWKQRQESKRVKAKVVTKDSTAVTYRTIE 69

Query: 77  GPQENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGD 136
            P++ HI++++  +DT+EK+  YV    S +RCLGTRQIL+EEDE QPNGR+FKKY MGD
Sbjct: 70  PPRDVHIKMLQANIDTLEKMFNYVTRTHSTKRCLGTRQILSEEDELQPNGRVFKKYNMGD 129

Query: 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYA 196
           Y+W++F +V   A AFG+GLR  GQ+PR NVV+FAETRAEWMIAA  CFKQ++ +VT+YA
Sbjct: 130 YKWKNFIEVERMASAFGRGLRECGQQPRRNVVVFAETRAEWMIAAHGCFKQSMSIVTVYA 189

Query: 197 TLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQG 256
           TLG+E +AH I ETEV  VIT+HDLLPKF+ +L   P V+T+I+MEDQL  T+TT FK+G
Sbjct: 190 TLGDEGVAHCIGETEVTTVITSHDLLPKFKVLLSKCPLVNTIIFMEDQLHKTETTGFKEG 249

Query: 257 IEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAF 316
           ++I+PF Q+++ G E  S++E  PP  +D AIIMYTSGSTGTPKGV+L+H N I+T+K F
Sbjct: 250 VKILPFSQVMRMGQE--SKFESVPPKAEDIAIIMYTSGSTGTPKGVLLSHRNCIATMKGF 307

Query: 317 SDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDA 376
            D V I P+D+ +G+LPLAHVFELL+ESVCL+ GVAIGYSTPLT+ID+SSKI +G+KGDA
Sbjct: 308 CDVVPIYPDDLLIGFLPLAHVFELLAESVCLMTGVAIGYSTPLTLIDSSSKIMKGSKGDA 367

Query: 377 SVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKV 436
           +VL PT +T VPLILDRI KG+++KV+  SPFK+ALF F ++YK KW +RG+R PL+DK+
Sbjct: 368 TVLKPTCMTTVPLILDRISKGINDKVNAGSPFKKALFQFLYQYKIKWIQRGYRTPLVDKL 427

Query: 437 VFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDM 496
           +F +  KL+GGR RL++SGGAPLSPDTHE IKVCLC  +IQGYGLTETTS ATVM   DM
Sbjct: 428 IFKKIAKLMGGRARLMMSGGAPLSPDTHEQIKVCLCVDLIQGYGLTETTSAATVMDYRDM 487

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195122946|ref|XP_002005971.1| GI18805 [Drosophila mojavensis] gi|193911039|gb|EDW09906.1| GI18805 [Drosophila mojavensis]

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 295/480 (61%), Positives = 383/480 (79%), Gaps = 2/480 (0%)

Query: 17  NMWLGGAMEALKAIAFVCDIITYPVYLFLQRPWEKKSLSSKKKAEIISKDNKSVTIRSIS 76
           + W+  A+ A+KA+AFV DIIT PVYL +Q PW+++  S + KA+II  D   +T R+  
Sbjct: 11  SFWVQSALGAIKALAFVYDIITLPVYLVMQAPWKRRQDSRRVKAKIIKSDETELTYRTTE 70

Query: 77  GPQENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGD 136
            P+E H++++++ +DT+EKV  YV    S +RCLGTRQIL+EEDE QPNGR+FKKY MGD
Sbjct: 71  PPREVHVKMLQENIDTLEKVFNYVAKTHSTKRCLGTRQILSEEDETQPNGRVFKKYNMGD 130

Query: 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYA 196
           Y+W++F +    A +FG+GLR LGQ PR N+VIFAETRAEW+IAA  CFKQ + +VT+YA
Sbjct: 131 YKWKNFIEAERMAASFGRGLRELGQAPRENIVIFAETRAEWLIAAHGCFKQAMSIVTVYA 190

Query: 197 TLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQG 256
           TLG++ +AH I+ETEV  VIT+HDLLPKF+ +L   P+V+T+IYMEDQL  T+TT FK+G
Sbjct: 191 TLGDDGVAHCISETEVTTVITSHDLLPKFKTLLDKCPKVNTIIYMEDQLHKTETTGFKEG 250

Query: 257 IEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAF 316
           ++I+PF Q+VK G++S  ++E  PP  +DTAIIMYTSGSTGTPKGV+L+H N I+T+K F
Sbjct: 251 VKILPFAQVVKIGNDS--KFENVPPKAEDTAIIMYTSGSTGTPKGVLLSHKNCIATMKGF 308

Query: 317 SDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDA 376
            D V I P DV +G+LPLAHVFEL++ESVCL+ G++IGYSTPLT+IDTSSKIKRG KGDA
Sbjct: 309 CDMVTIYPEDVLIGFLPLAHVFELVAESVCLMTGISIGYSTPLTLIDTSSKIKRGCKGDA 368

Query: 377 SVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKV 436
           SVL PT +T+VPLILDRI KG+++KV+  SPF++ALF F ++YK KW +RG+R PLIDK+
Sbjct: 369 SVLKPTCMTSVPLILDRISKGINDKVNSGSPFRKALFKFLYQYKVKWVQRGYRTPLIDKL 428

Query: 437 VFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDM 496
           VF +  KL+GG+VR+I+SGGAPLS DTHE IK CLC  +IQGYGLTETTS ATVM   DM
Sbjct: 429 VFEKVAKLMGGKVRIIMSGGAPLSADTHEQIKTCLCVDLIQGYGLTETTSGATVMDARDM 488

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	504
FB|FBgn0263120	717	Acsl "Acyl-CoA synthetase long	0.948	0.666	0.589	2.4e-156
ZFIN|ZDB-GENE-030131-492	723	acsl3b "acyl-CoA synthetase lo	0.926	0.645	0.430	2.3e-103
ZFIN|ZDB-GENE-050420-181	713	acsl3a "acyl-CoA synthetase lo	0.922	0.652	0.432	3.3e-102
MGI|MGI:1921455	720	Acsl3 "acyl-CoA synthetase lon	0.898	0.629	0.450	7.1e-100
RGD|70552	720	Acsl3 "acyl-CoA synthetase lon	0.831	0.581	0.470	7.1e-100
UNIPROTKB|F1SR72	720	ACSL3 "Uncharacterized protein	0.898	0.629	0.439	3.1e-99
UNIPROTKB|F1PEH9	670	ACSL4 "Uncharacterized protein	0.801	0.602	0.467	6.4e-99
UNIPROTKB|J9P9G0	720	ACSL3 "Uncharacterized protein	0.801	0.561	0.476	8.2e-99
UNIPROTKB|O60488	711	ACSL4 "Long-chain-fatty-acid--	0.801	0.568	0.462	8.2e-99
RGD|69401	670	Acsl4 "acyl-CoA synthetase lon	0.801	0.602	0.462	1e-98

FB|FBgn0263120 Acsl "Acyl-CoA synthetase long-chain" [Drosophila melanogaster (taxid:7227)]

 Score = 1524 (541.5 bits), Expect = 2.4e-156, P = 2.4e-156
 Identities = 283/480 (58%), Positives = 364/480 (75%)

Query:    17 NMWLGGAMEALKAIAFVCDIITYPVYLFLQRPWXXXXXXXXXXXXXXXXDNKSVTIRSIS 76
             + W+  A+ A+KAIAFV DIIT PVYL LQ+PW                D+  +T R+  
Sbjct:    13 SFWVQSAIGAIKAIAFVYDIITLPVYLVLQKPWKRRQDSRRVKAKIVRNDDNELTYRTTD 72

Query:    77 GPQENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGD 136
              P++ H++++++ +DT+EKV  YV   ++ +RCLGTRQIL+EEDE Q NGR+FKKY +GD
Sbjct:    73 PPRDVHVKMLQENIDTLEKVFNYVAKTYTSKRCLGTRQILSEEDEVQQNGRVFKKYNLGD 132

Query:   137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYA 196
             Y+W++F +    A  FG+GLR LGQ+PR N+VIFAETRAEWMIAA  CFKQ +P+VT+YA
Sbjct:   133 YKWKTFTEAERTAANFGRGLRELGQKPRENIVIFAETRAEWMIAAHGCFKQAMPIVTVYA 192

Query:   197 TLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQG 256
             TLG++ +AH I ETEV  VIT+HDLLPKF+ +L   P V T+IY+EDQL  T+TT FK+G
Sbjct:   193 TLGDDGVAHCITETEVTTVITSHDLLPKFKTLLDKCPLVKTIIYIEDQLQKTETTGFKEG 252

Query:   257 IEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAF 316
             ++I+PF Q+VK            PP   D AIIMYTSGSTGTPKGV+L+H N I+T+K F
Sbjct:   253 VKILPFNQVVKTGQDSKFEHV--PPKGDDIAIIMYTSGSTGTPKGVLLSHKNCIATMKGF 310

Query:   317 SDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDA 376
              D V I P+DV +G+LPLAHVFEL++ESVCL+ GV IGYSTPLT+IDTSSKIKRG KGDA
Sbjct:   311 VDMVPIYPDDVLIGFLPLAHVFELVAESVCLMTGVPIGYSTPLTLIDTSSKIKRGCKGDA 370

Query:   377 SVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKV 436
             +VL PT +T+VPLILDRI KG+++KV+  S FK++LF F ++YK KW +RG++ PLIDK+
Sbjct:   371 TVLKPTCMTSVPLILDRISKGINDKVNSGSAFKKSLFKFLYQYKVKWVQRGYKTPLIDKL 430

Query:   437 VFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDM 496
             VF +  KL+GG+VR+I+SGGAPLS DTHE IK CLC ++IQGYGLTETTS ATVM   DM
Sbjct:   431 VFKKVAKLMGGKVRIIMSGGAPLSADTHEQIKTCLCLELIQGYGLTETTSGATVMDYRDM 490

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0007399 "nervous system development" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0010890 "positive regulation of sequestering of triglyceride" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007268 "synaptic transmission" evidence=IMP

GO:0035282 "segmentation" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-030131-492 acsl3b "acyl-CoA synthetase long-chain family member 3b" [Danio rerio (taxid:7955)]

 Score = 1024 (365.5 bits), Expect = 2.3e-103, P = 2.3e-103
 Identities = 205/476 (43%), Positives = 295/476 (61%)

Query:    24 MEALKAIAFVCDIITY-PVYLFLQRPWXXXXXXXXXXXXXXXXDNKSVTIRSISGPQENH 82
             ++  +++ +V  +IT+ P YL                       N +   R+++  Q   
Sbjct:    24 LQVFRSVVWVYSVITFLPWYLLSGA--SGNQARAKRVKARAINGNPAGPYRAVNS-QLKL 80

Query:    83 IRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSF 142
               L+ +GVDT++KV  Y V  F ++ CLGTR++L+EEDE QPNG++FKK ++GDY W S+
Sbjct:    81 ASLLHEGVDTLDKVFEYAVVHFPERDCLGTRELLSEEDEIQPNGKVFKKVILGDYNWLSY 140

Query:   143 NQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEA 202
                   A+ FG GL +LGQ+P  N+ IF ETRAEW+IAAQACF  N P+VT+Y+TLG  A
Sbjct:   141 QDTFHLAQRFGSGLAALGQKPLCNIAIFCETRAEWVIAAQACFMYNFPLVTLYSTLGGSA 200

Query:   203 IAHGINETEVNIVITTHDLLP-KFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVP 261
             IAHG+NETEV  ++T+ DLL  + + IL   PR+  +I ++ + TS    +  +GI +  
Sbjct:   201 IAHGLNETEVTHIVTSKDLLQSRLKAILLEVPRLKHIIVVDTKPTSWP--DLPRGIMVHN 258

Query:   262 FKQIVKXXXX-XXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV 320
                + +              P P D A+IMYTSGSTG PKGV+++H N+I+ +   ++ +
Sbjct:   259 MAAVQELGSKPENIMVSRRQPVPSDIAVIMYTSGSTGIPKGVMISHSNIIAGITGMAERI 318

Query:   321 -HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVL 379
              +++ ND ++GYLPLAHV EL +E VC+  G  IGYS+P T+ D SSKIK+G+KGD SVL
Sbjct:   319 PNLDENDTYIGYLPLAHVLELSAELVCVSHGCRIGYSSPQTLADQSSKIKKGSKGDTSVL 378

Query:   380 HPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFG 439
              PT + AVP I+DRIYK V  KV   S  ++ LF  A+ YK +   +G+  PL D++VF 
Sbjct:   379 KPTLMAAVPEIMDRIYKNVMTKVEEMSSVQKTLFVLAYNYKMEQISKGYTTPLCDRLVFR 438

Query:   440 QTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
             + + LLGG  R++LSGGAPLS  T   + +C C  V QGYGLTET    T+  ++D
Sbjct:   439 KVRSLLGGNTRVLLSGGAPLSAATQRFMNICFCCPVGQGYGLTETCGAGTISEMSD 494

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

ZFIN|ZDB-GENE-050420-181 acsl3a "acyl-CoA synthetase long-chain family member 3a" [Danio rerio (taxid:7955)]

 Score = 1013 (361.7 bits), Expect = 3.3e-102, P = 3.3e-102
 Identities = 204/472 (43%), Positives = 297/472 (62%)

Query:    28 KAIAFVCDIITYPVYLFLQRPWXXXXXX-XXXXXXXXXXDNKSVTIRSISGPQENHIRLI 86
             + + ++  +I+Y  YL L+ P                   + +   R ++  +   + L 
Sbjct:    16 RLVVWLYSLISYLPYLLLRSPESQSLSECSRRLKARSVSGDPAGPYRDVAALKGLEMCL- 74

Query:    87 RDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVN 146
               G++T+++V +  V+ F +  CLGTR++L+EEDE Q +G++FKK ++G+Y W S+ QV 
Sbjct:    75 HPGINTLDQVFQSSVSHFPNSDCLGTRELLSEEDETQEDGKVFKKVILGEYRWMSYEQVF 134

Query:   147 DEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHG 206
              E  AFG GL +LGQ+P  N+ IF ETRAEW+IAAQACF  N P+VT+Y+TLG  AIAHG
Sbjct:   135 KEVNAFGSGLAALGQKPMKNIAIFCETRAEWIIAAQACFMYNFPLVTLYSTLGGPAIAHG 194

Query:   207 INETEVNIVITTHDLLP-KFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQI 265
             +NE EV+ +IT+ DLL  K ++I    PR+  +I ++D+L+++  + + +GI I     +
Sbjct:   195 LNEAEVSHIITSKDLLETKLKSIFIEVPRLCHVIVVDDKLSTS--SEYPRGISIHSMASV 252

Query:   266 VKXXXXXXXXXX-XXPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV-HIE 323
              +             PP   D A+IMYTSGSTG PKGV+++H N+IS +   +  +  + 
Sbjct:   253 KELGARPENASKPKNPPCSSDVAVIMYTSGSTGVPKGVMISHSNIISGITGMTHRIPKLV 312

Query:   324 PNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTA 383
              +D ++GYLPLAHV EL +E VCL  G  IGYS+P T+ D S+KIK+G++GD SVL PT 
Sbjct:   313 EDDTYIGYLPLAHVLELSAEMVCLAHGCRIGYSSPQTLSDQSTKIKKGSRGDISVLRPTL 372

Query:   384 LTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKK 443
             + AVP I+DRIYK V  +V + S F+R LF  A+ YK +    G+  PL DK+VF + + 
Sbjct:   373 MAAVPEIMDRIYKNVMLRVEQMSGFQRTLFLLAYNYKMEQLAMGYSTPLCDKLVFRKVRA 432

Query:   444 LLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
             LLGGR+R++LSGGAPLS  T   + +C C  V QGYGLTET    T+ HL D
Sbjct:   433 LLGGRLRVLLSGGAPLSAATQRFMNICFCCPVGQGYGLTETCGAGTISHLWD 484

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

MGI|MGI:1921455 Acsl3 "acyl-CoA synthetase long-chain family member 3" [Mus musculus (taxid:10090)]

 Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
 Identities = 209/464 (45%), Positives = 284/464 (61%)

Query:    36 IITYPVYLFLQRPWXXXXXXXXXXXXXXXXDNKSVTIRSISGPQENHIRLIRDGVDTMEK 95
             I+TY  + FL                    D+   +I S+ G       ++  G DT++K
Sbjct:    35 ILTYIPFYFLCESKQEKPNQIKAKPVSSKPDSAYRSINSVDGLAS----VLYPGCDTLDK 90

Query:    96 VLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKG 155
             V  Y   +F ++R LGTR+IL EEDE QPNG+IFKK ++G Y W S+  V   A  FG G
Sbjct:    91 VFMYAKNKFKNKRLLGTREILNEEDEIQPNGKIFKKVILGHYNWLSYEDVFIRALDFGNG 150

Query:   156 LRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIV 215
             L+ LGQ+P+ N+ IF ETRAEWMIAAQACF  N  +VT+YATLG  AI HG+NETEV  +
Sbjct:   151 LQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNETEVTNI 210

Query:   216 ITTHDLLP-KFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKXXXXXXX 274
             IT+ +LL  K ++I+ L PR+  +I ++ +  +   + F +G+ IV     V+       
Sbjct:   211 ITSKELLQTKLKDIVSLVPRLRHIITVDGKPPTW--SEFPKGV-IVHTMAAVQALGVKAN 267

Query:   275 XX--XXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV-HIEPNDVFLGY 331
                     P P D A+IMYTSGSTG PKGV+++H N+I+++   +  +  +   DV++GY
Sbjct:   268 VEKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNIIASITGMARRIPRLGEEDVYIGY 327

Query:   332 LPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLIL 391
             LPLAHV EL +E VCL  G  IGYS+P T+ D SSKIK+G+KGD SVL PT + AVP I+
Sbjct:   328 LPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSVLKPTLMAAVPEIM 387

Query:   392 DRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRL 451
             DRIYK V  KV+  S F+R LF  A+ YK +   +G   PL D+ VF   ++LLGG +RL
Sbjct:   388 DRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQISKGCSTPLCDRFVFRNVRRLLGGNIRL 447

Query:   452 ILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
             +L GGAPLS  T   + +C C  V QGYGLTE+T   T+  + D
Sbjct:   448 LLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGTITEVWD 491

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005811 "lipid particle" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0019901 "protein kinase binding" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0034379 "very-low-density lipoprotein particle assembly" evidence=ISO

GO:0042998 "positive regulation of Golgi to plasma membrane protein transport" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0044539 "long-chain fatty acid import" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0051047 "positive regulation of secretion" evidence=ISO

GO:2001247 "positive regulation of phosphatidylcholine biosynthetic process" evidence=ISO

RGD|70552 Acsl3 "acyl-CoA synthetase long-chain family member 3" [Rattus norvegicus (taxid:10116)]

 Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
 Identities = 201/427 (47%), Positives = 275/427 (64%)

Query:    73 RSISGPQENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKY 132
             RS++   +    ++  G DT++KV  Y   +F D+R LGTR+IL EEDE QPNG++FKK 
Sbjct:    69 RSVNS-MDGLASVLYPGCDTLDKVFMYAKNKFKDKRLLGTREILNEEDEIQPNGKVFKKV 127

Query:   133 VMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVV 192
             ++G Y W S+  V   A  FG GL+ LGQ+P+ N+ IF ETRAEWMIAAQACF  N  +V
Sbjct:   128 ILGHYNWLSYEDVFIRALDFGNGLQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLV 187

Query:   193 TIYATLGEEAIAHGINETEVNIVITTHDLLP-KFRNILKLTPRVSTLIYMEDQLTSTDTT 251
             T+YATLG  AI HG+NETEV  +IT+ +LL  K ++I+ L PR+  +I ++ +  +   +
Sbjct:   188 TLYATLGGPAIVHGLNETEVTNIITSKELLQTKLKDIVSLVPRLRHIITVDGKPPTW--S 245

Query:   252 NFKQGIEIVPFKQIVKXXXXXXXXX--XXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDNM 309
              F +G+ IV     V+               P P D A+IMYTSGSTG PKGV+++H N+
Sbjct:   246 EFPKGV-IVHTMAAVQALGVKADVDKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNI 304

Query:   310 ISTLKAFSDAV-HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKI 368
             I+++   +  +  +   DV++GYLPLAHV EL +E VCL  G  IGYS+P T+ D SSKI
Sbjct:   305 IASITGMARRIPRLGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKI 364

Query:   369 KRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGF 428
             K+G+KGD SVL PT + AVP I+DRIYK V  KV+  S F+R LF  A+ YK +   +G 
Sbjct:   365 KKGSKGDTSVLKPTLMAAVPEIMDRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQISKGC 424

Query:   429 RCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCA 488
               PL D+ VF   ++LLGG +R++L GGAPLS  T   + +C C  V QGYGLTE+T   
Sbjct:   425 STPLCDRFVFRNVRRLLGGNIRVLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAG 484

Query:   489 TVMHLND 495
             T+  + D
Sbjct:   485 TITEVWD 491

GO:0003987 "acetate-CoA ligase activity" evidence=TAS

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISO;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0005811 "lipid particle" evidence=IEA;ISO

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0006633 "fatty acid biosynthetic process" evidence=IDA

GO:0007420 "brain development" evidence=IEP

GO:0007584 "response to nutrient" evidence=IEP

GO:0008152 "metabolic process" evidence=TAS

GO:0014070 "response to organic cyclic compound" evidence=IEP

GO:0016021 "integral to membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0019904 "protein domain specific binding" evidence=IEA;ISO

GO:0034379 "very-low-density lipoprotein particle assembly" evidence=IEA;ISO

GO:0042998 "positive regulation of Golgi to plasma membrane protein transport" evidence=IEA;ISO

GO:0044539 "long-chain fatty acid import" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;ISO

GO:0051047 "positive regulation of secretion" evidence=IEA;ISO

GO:2001247 "positive regulation of phosphatidylcholine biosynthetic process" evidence=IEA;ISO

UNIPROTKB|F1SR72 ACSL3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 985 (351.8 bits), Expect = 3.1e-99, P = 3.1e-99
 Identities = 204/464 (43%), Positives = 285/464 (61%)

Query:    36 IITYPVYLFLQRPWXXXXXXXXXXXXXXXXDNKSVTIRSISGPQENHIRLIRDGVDTMEK 95
             I+TY  Y FL                    ++   ++ S+ G       ++  G DT++K
Sbjct:    35 ILTYIPYYFLSESRQEKSNRIKAKPVNSKPESAYRSVNSLDGLAS----VLYPGCDTLDK 90

Query:    96 VLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKG 155
             V  +   +F D+  LGTR++L EEDE QPNG+IFKK ++G+Y W S+ +V   A  FG G
Sbjct:    91 VFMHAKNKFKDKSLLGTREVLNEEDEVQPNGKIFKKVILGNYNWLSYEEVFVRASNFGNG 150

Query:   156 LRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIV 215
             L+ LGQ+P+ N+ IF ETRAEWMIAAQACF  N  +VT+YATLG  AI HG+NETEV  +
Sbjct:   151 LQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNETEVTNI 210

Query:   216 ITTHDLLP-KFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKXXXXXXX 274
             IT+ +LL  K ++I+ L PR+  +I ++ +  +   + F +G+ IV     V+       
Sbjct:   211 ITSKELLQTKLKDIVSLVPRLRHIITVDGKPPAW--SEFPKGV-IVHTMAAVQALGAKAS 267

Query:   275 XXXX--XPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV-HIEPNDVFLGY 331
                     P P D A+IMYTSGSTG PKGV+++H N+I+ +   ++ +  +   DV++GY
Sbjct:   268 VENKPQSKPMPLDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMAERIPELGEKDVYIGY 327

Query:   332 LPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLIL 391
             LPLAHV EL +E VCL  G  IGYS+P T+ D SSKIK+G+KGDAS+L PT + AVP I+
Sbjct:   328 LPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDASMLKPTLMAAVPEIM 387

Query:   392 DRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRL 451
             DRIYK V  KV+  S F+R LF  A+ YK +   +G   PL D+ +F + + LLGG  RL
Sbjct:   388 DRIYKNVMNKVNEMSSFQRNLFILAYNYKMEQISKGCSTPLCDRFIFRKVRSLLGGNTRL 447

Query:   452 ILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
             +L GGAPLS  T   + +C C  V QGYGLTE++   T+  + D
Sbjct:   448 LLCGGAPLSAATQRFMNICFCCPVGQGYGLTESSGAGTITEVWD 491

GO:2001247 "positive regulation of phosphatidylcholine biosynthetic process" evidence=IEA

GO:0051047 "positive regulation of secretion" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0042998 "positive regulation of Golgi to plasma membrane protein transport" evidence=IEA

GO:0034379 "very-low-density lipoprotein particle assembly" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|F1PEH9 ACSL4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
 Identities = 192/411 (46%), Positives = 270/411 (65%)

Query:    89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDE 148
             G DT++K+  + V++F  +  LGTR+IL+EE+E QPNG++FKK ++G Y+W S+ +VN  
Sbjct:    34 GADTLDKLFDHAVSKFGKKDSLGTREILSEENEMQPNGKVFKKLILGSYKWMSYLEVNCR 93

Query:   149 AEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGIN 208
                FG GL +LG +P++ + IF ETRAEWMIAAQ CFK N P+VT+YATLG+EA+ HG+N
Sbjct:    94 VNNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKEAVVHGLN 153

Query:   209 ETEVNIVITTHDLLP-KFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVK 267
             E+E   +IT+ +LL  K +  L     V  +IY++++  + +   + +G EI    Q V+
Sbjct:   154 ESEATYLITSVELLESKLKTALLDINCVKHIIYVDNK--TINKVEYPEGFEIHSM-QSVE 210

Query:   268 XXXXXXXXXXXXP--PTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVH-IEP 324
                         P  PTP D AI+MYTSGSTG PKGV++ H N+I+ +    + +  + P
Sbjct:   211 ELGSKPENLSVPPNRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGP 270

Query:   325 NDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTAL 384
              D ++GYLPLAHV EL +E  C   G  IGYS+PLT+ D SSKIK+G+KGD +VL PT +
Sbjct:   271 KDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLM 330

Query:   385 TAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKL 444
              AVP I+DRIYK V  KV   +  ++ LF   ++YK +  K+G+  PL + ++F + K L
Sbjct:   331 AAVPEIMDRIYKNVMSKVQEMNYIQKTLFKLGYDYKLEQIKKGYDAPLCNLLLFKKVKAL 390

Query:   445 LGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
             LGG VR++LSGGAPLSP TH  + VC C  V QGYGLTE+    TV  + D
Sbjct:   391 LGGNVRMMLSGGAPLSPQTHRFMNVCFCCPVGQGYGLTESCGAGTVTEVTD 441

GO:0060136 "embryonic process involved in female pregnancy" evidence=IEA

GO:0047676 "arachidonate-CoA ligase activity" evidence=IEA

GO:0032307 "negative regulation of prostaglandin secretion" evidence=IEA

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

UNIPROTKB|J9P9G0 ACSL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
 Identities = 196/411 (47%), Positives = 269/411 (65%)

Query:    89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDE 148
             G DT++KV  Y   +F D++ LGTR+IL+E+DE QPNG+IFKK ++G+Y W S+  V   
Sbjct:    84 GCDTLDKVFMYAKNKFKDKKLLGTREILSEDDEVQPNGKIFKKVILGNYNWLSYEDVFVR 143

Query:   149 AEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGIN 208
             A  FG GL+ LGQ+P+ N+ IF ETRAEWMIAAQACF  N  +VT+YATLG  AI HG+N
Sbjct:   144 AFNFGNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLN 203

Query:   209 ETEVNIVITTHDLLP-KFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVK 267
             ETEV  +IT+ +LL  K ++I+ L PR+  +I ++ +  +   + F +G+ IV     V+
Sbjct:   204 ETEVTNIITSKELLQTKLKDIVSLVPRLRHIITVDGKPPTW--SEFPKGV-IVHTMAAVQ 260

Query:   268 XXXXXXXXXXX--XPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVH-IEP 324
                            P P D A+IMYTSGSTG PKGV+++H N+I+ +   ++ +  +  
Sbjct:   261 ALGAKASTENKPQSKPMPLDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMAERIPGLGE 320

Query:   325 NDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTAL 384
              DV++GYLPLAHV EL +E VCL  G  IGYS+P T+ D SSKIK+G+KGD ++L PT +
Sbjct:   321 GDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTTMLKPTLM 380

Query:   385 TAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKL 444
              AVP I+DRIYK V  KV+  S F+R LF  A+ YK +   RG   PL D+ +F + + L
Sbjct:   381 AAVPEIMDRIYKNVMNKVNEMSSFQRNLFVLAYNYKMEQISRGHGTPLCDRFIFRKVRGL 440

Query:   445 LGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
             LGG +RL+L GGAPLS  T   + +C C  V QGYGLTE+    T+  + D
Sbjct:   441 LGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESCGAGTITEVWD 491

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|O60488 ACSL4 "Long-chain-fatty-acid--CoA ligase 4" [Homo sapiens (taxid:9606)]

 Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
 Identities = 190/411 (46%), Positives = 272/411 (66%)

Query:    89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDE 148
             G DT++K+  + V++F  +  LGTR+IL+EE+E QPNG++FKK ++G+Y+W ++ +VN  
Sbjct:    75 GADTLDKLFDHAVSKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWMNYLEVNRR 134

Query:   149 AEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGIN 208
                FG GL +LG +P++ + IF ETRAEWMIAAQ CFK N P+VT+YATLG+EA+ HG+N
Sbjct:   135 VNNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKEAVVHGLN 194

Query:   209 ETEVNIVITTHDLLP-KFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVK 267
             E+E + +IT+ +LL  K +  L     V  +IY++++  + +   + +G EI    Q V+
Sbjct:   195 ESEASYLITSVELLESKLKTALLDISCVKHIIYVDNK--AINKAEYPEGFEIHSM-QSVE 251

Query:   268 XXXXXXXXXXXXP--PTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVH-IEP 324
                         P  PTP D AI+MYTSGSTG PKGV++ H N+I+ +    + +  + P
Sbjct:   252 ELGSNPENLGIPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGP 311

Query:   325 NDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTAL 384
              D ++GYLPLAHV EL +E  C   G  IGYS+PLT+ D SSKIK+G+KGD +VL PT +
Sbjct:   312 KDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLM 371

Query:   385 TAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKL 444
              AVP I+DRIYK V  KV   +  ++ LF   ++YK +  K+G+  PL + ++F + K L
Sbjct:   372 AAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKKGYDAPLCNLLLFKKVKAL 431

Query:   445 LGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
             LGG VR++LSGGAPLSP TH  + VC C  + QGYGLTE+    TV  + D
Sbjct:   432 LGGNVRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTVTEVTD 482

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007584 "response to nutrient" evidence=IEA

GO:0015908 "fatty acid transport" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0060136 "embryonic process involved in female pregnancy" evidence=IEA

GO:0060996 "dendritic spine development" evidence=IEA

GO:0070672 "response to interleukin-15" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IDA

GO:0047676 "arachidonate-CoA ligase activity" evidence=IDA

GO:0032307 "negative regulation of prostaglandin secretion" evidence=IDA

GO:0008610 "lipid biosynthetic process" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0030307 "positive regulation of cell growth" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0019432 "triglyceride biosynthetic process" evidence=TAS

GO:0035338 "long-chain fatty-acyl-CoA biosynthetic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA

RGD|69401 Acsl4 "acyl-CoA synthetase long-chain family member 4" [Rattus norvegicus (taxid:10116)]

 Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
 Identities = 190/411 (46%), Positives = 272/411 (66%)

Query:    89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDE 148
             G DT++K+  + V +F  +  LGTR+IL+EE+E QPNG++FKK ++G+Y+W ++ +VN  
Sbjct:    34 GADTLDKLFDHAVAKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWINYLEVNCR 93

Query:   149 AEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGIN 208
                FG GL +LG +P++ + IF ETRAEWMIAAQ CFK N P+VT+YATLG+EA+ HG+N
Sbjct:    94 VNNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKEAVVHGLN 153

Query:   209 ETEVNIVITTHDLLP-KFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVK 267
             E+E + +IT+ +LL  K +  L     V  +IY++++  + +   + +G+EI    Q V+
Sbjct:   154 ESEASYLITSVELLESKLKAALLDINCVKHIIYVDNK--TINRAEYPEGLEIHSM-QSVE 210

Query:   268 XXXXXXXXXXXXP--PTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVH-IEP 324
                         P  PTP D AI+MYTSGSTG PKGV++ H N+I+ +    + +  + P
Sbjct:   211 ELGSKPENSSIPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGP 270

Query:   325 NDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTAL 384
              D ++GYLPLAHV EL +E  C   G  IGYS+PLT+ D SSKIK+G+KGD +VL PT +
Sbjct:   271 KDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLM 330

Query:   385 TAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKL 444
              AVP I+DRIYK V  KV   +  ++ LF   ++YK +  K+G+  PL + ++F + K L
Sbjct:   331 AAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKKGYDAPLCNLILFKKVKAL 390

Query:   445 LGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
             LGG VR++LSGGAPLSP TH  + VC C  + QGYGLTE+    TV  + D
Sbjct:   391 LGGNVRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTVTEVTD 441

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISO

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISO;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005777 "peroxisome" evidence=IDA

GO:0005811 "lipid particle" evidence=IEA;ISO

GO:0006629 "lipid metabolic process" evidence=ISO

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0006641 "triglyceride metabolic process" evidence=IGI

GO:0007584 "response to nutrient" evidence=IEP

GO:0008610 "lipid biosynthetic process" evidence=IEA;ISO

GO:0015908 "fatty acid transport" evidence=IGI

GO:0030307 "positive regulation of cell growth" evidence=IEA;ISO

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IEA;ISO

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0032307 "negative regulation of prostaglandin secretion" evidence=IEA;ISO

GO:0043025 "neuronal cell body" evidence=IDA

GO:0047676 "arachidonate-CoA ligase activity" evidence=IEA;ISO

GO:0060136 "embryonic process involved in female pregnancy" evidence=IEA;ISO

GO:0060996 "dendritic spine development" evidence=IMP

GO:0070672 "response to interleukin-15" evidence=IEP

GO:0005783 "endoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O95573	ACSL3_HUMAN	6, ., 2, ., 1, ., 3	0.4492	0.9007	0.6305	yes	N/A
Q63151	ACSL3_RAT	6, ., 2, ., 1, ., 3	0.4514	0.9007	0.6305	yes	N/A
Q9CZW4	ACSL3_MOUSE	6, ., 2, ., 1, ., 3	0.4557	0.9007	0.6305	yes	N/A
Q5R668	ACSL3_PONAB	6, ., 2, ., 1, ., 3	0.4470	0.9007	0.6305	yes	N/A
Q1ZXQ4	FCSB_DICDI	6, ., 2, ., 1, ., 3	0.3194	0.8313	0.6225	yes	N/A
O60135	LCF1_SCHPO	6, ., 2, ., 1, ., 3	0.3325	0.8293	0.6183	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	504
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	1e-140
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	1e-139
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	8e-93
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	6e-90
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	2e-86
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	3e-67
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	1e-64
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	1e-59
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	2e-58
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	8e-56
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	1e-40
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	2e-39
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	2e-32
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	6e-28
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	5e-27
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	1e-26
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	7e-26
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	3e-24
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	8e-23
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	2e-20
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	7e-20
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	1e-19
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	1e-19
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	1e-18
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	2e-18
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	3e-17
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	4e-17
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	1e-16
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	3e-16
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	6e-16
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	2e-15
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	6e-15
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	6e-15
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	2e-14
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	3e-14
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	4e-14
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	9e-14
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	1e-13
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	2e-13
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	3e-13
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	3e-13
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	4e-13
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	6e-13
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	9e-13
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	2e-12
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	4e-12
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	4e-12
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	6e-12
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	1e-11
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	1e-11
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	2e-11
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	3e-11
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	5e-11
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	7e-11
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	8e-11
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	8e-11
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	1e-10
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	2e-10
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	2e-10
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	2e-10
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	2e-10
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	4e-10
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	5e-10
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	5e-10
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	6e-10
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	7e-10
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	9e-10
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	1e-09
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	2e-09
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	3e-09
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	3e-09
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	5e-09
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	5e-09
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	9e-09
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-08
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	1e-08
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	1e-08
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	2e-08
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	3e-08
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	4e-08
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	1e-07
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	1e-07
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	1e-07
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	1e-07
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	1e-07
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	1e-07
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	2e-07
PTZ00297	1452	PTZ00297, PTZ00297, pantothenate kinase; Provision	2e-07
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-07
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	2e-07
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	3e-07
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	3e-07
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	4e-07
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	5e-07
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	6e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	7e-07
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	7e-07
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	8e-07
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	8e-07
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	9e-07
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	9e-07
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	1e-06
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	1e-06
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	1e-06
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	2e-06
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	2e-06
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	2e-06
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	2e-06
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-06
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	4e-06
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	4e-06
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	6e-06
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	8e-06
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	8e-06
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	9e-06
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	1e-05
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	1e-05
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	2e-05
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	2e-05
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	2e-05
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	2e-05
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	2e-05
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	3e-05
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	3e-05
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	3e-05
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	5e-05
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	5e-05
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	5e-05
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	5e-05
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	5e-05
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	6e-05
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	9e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-04
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	1e-04
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	2e-04
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	3e-04
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	4e-04
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	4e-04
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	5e-04
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	5e-04
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	5e-04
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	7e-04
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	8e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	9e-04
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	0.001
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	0.001
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	0.001
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	0.001
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	0.002
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	0.002
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	0.002
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	0.003
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	0.003
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	0.004
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	0.004
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	0.004

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  414 bits (1066), Expect = e-140
 Identities = 155/366 (42%), Positives = 209/366 (57%), Gaps = 52/366 (14%)

Query: 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTI 194
           G YEW S+ +V + A   G GLR+LG +P   + IFAE R EW+I  QACF Q++ +V +
Sbjct: 1   GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60

Query: 195 YATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFK 254
           Y TLGEEAI + +NETE++IV                                       
Sbjct: 61  YDTLGEEAIEYILNETEISIVFC------------------------------------- 83

Query: 255 QGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLK 314
             +++  F+++ + G ++  +   +PP P+D A IMYTSG+TG PKGV+LTH N+++ + 
Sbjct: 84  DAVKVYSFEELEELGKKN--KVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVA 141

Query: 315 AFSDAV--HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGT 372
             +  V   I P DV++ YLPLAH+FE + E+VCL  G  IGY +  T         RG 
Sbjct: 142 GINKIVPEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDT---------RGL 192

Query: 373 KGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRG--FRC 430
           KGD   L PT    VP +LDRIYKG+  KV+     KR LF FA+ YK    +RG  +  
Sbjct: 193 KGDIKELKPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRGHGYAS 252

Query: 431 PLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATV 490
           PL DK+VF + K  LGGRVRL+LSGGAPLSPDT E ++V L   V+QGYGLTET +  T+
Sbjct: 253 PLWDKLVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTL 312

Query: 491 MHLNDM 496
               D 
Sbjct: 313 SDPGDT 318

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score =  418 bits (1076), Expect = e-139
 Identities = 189/420 (45%), Positives = 256/420 (60%), Gaps = 14/420 (3%)

Query: 87  RDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVN 146
            +G  T+  +      ++SD+R LGTR++++ E E   +GR F+K  +G+YEW ++ QV 
Sbjct: 54  WEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVF 113

Query: 147 DEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHG 206
           +    F  GL +LG      V IFA+TRAEW+IA Q CF+QNI VVTIYA+LGEEA+ H 
Sbjct: 114 ERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHS 173

Query: 207 INETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQG-IEIVPFKQI 265
           +NETEV  VI     L K  +I      V  +IYM+D+   +D++        +  F ++
Sbjct: 174 LNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEV 233

Query: 266 VKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV-HIEP 324
            K G E+    +   P+P D A+IMYTSGSTG PKGV++TH N+++T+      V  +  
Sbjct: 234 EKLGKENPV--DPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGK 291

Query: 325 NDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTAL 384
           NDV+L YLPLAH+ EL +ESV    G AIGY +PLT+ DTS+KIK+GTKGDAS L PT +
Sbjct: 292 NDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLM 351

Query: 385 TAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWA--------KRGFRCPLIDKV 436
           TAVP ILDR+  GV +KV       + LF  A  YKR+ A          G    L D +
Sbjct: 352 TAVPAILDRVRDGVRKKVDAKGGLAKKLFDIA--YKRRLAAIEGSWFGAWGLEKLLWDAL 409

Query: 437 VFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDM 496
           VF + + +LGGR+R +LSGGAPLS DT   I +CL   + QGYGLTET + AT    +D 
Sbjct: 410 VFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDT 469

Length = 696

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  296 bits (761), Expect = 8e-93
 Identities = 141/448 (31%), Positives = 218/448 (48%), Gaps = 28/448 (6%)

Query: 65  KDNKSVTIRSISGPQENHIRLIRDGVD--TMEKVLRYVVTRFSDQRCLGTRQILAEEDE- 121
            +N S   R      E H RL  +        + L  +     D+R L  R +   E E 
Sbjct: 41  TENASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEV 100

Query: 122 -KQPNG--RIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWM 178
            K  +G  R  +     +  + ++ ++ +    FG+GL  LG     NV I+ ETR EW+
Sbjct: 101 VKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWL 160

Query: 179 IAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVI----TTHDLLPKFRNILKLTPR 234
            +    + Q++   T+YA LGE+A+A+ + ETE   ++       +LL   ++     P 
Sbjct: 161 ASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGG--MPN 218

Query: 235 VSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKD-TAIIMYTS 293
             T+IY++    S DT     G  +V +  +V +G  +GS +  + P   D  A+IMYTS
Sbjct: 219 T-TIIYLDSLPASVDTE----GCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTS 273

Query: 294 GSTGTPKGVVLTHDNMISTLKAFSDAV-----HIEPNDVFLGYLPLAHVFELLSESVCLL 348
           G+TG PKGV+ TH ++ + + A  D +       E ++ +  YLPLAH+ E    ++ L 
Sbjct: 274 GTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLA 333

Query: 349 CGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPF 408
            G  IG+ +P T+ DT ++      GD +   P  L  VP I D I K V  K+      
Sbjct: 334 RGALIGFGSPRTLTDTFAR----PHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSL 389

Query: 409 KRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIK 468
           KR +F  A++ + +  K G   P  ++ VF   + +LGGRVR +LSGG PLS  T E + 
Sbjct: 390 KRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVN 449

Query: 469 VCLCEKVIQGYGLTETTSCATVMHLNDM 496
           V     VIQG+GLTET  C  +    D+
Sbjct: 450 VVF-GMVIQGWGLTETVCCGGIQRTGDL 476

Length = 700

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  286 bits (735), Expect = 6e-90
 Identities = 124/400 (31%), Positives = 194/400 (48%), Gaps = 22/400 (5%)

Query: 114 QILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAET 173
           + LAE  + +P+G       +G +E  ++ ++ +   A   GL SLG      V IFA  
Sbjct: 20  KRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAAN 79

Query: 174 RAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVIT-THDLLPKFRNILKLT 232
           R EW IA  A        V IY+T   E +A+ +NE+E  ++     +LL     +L+  
Sbjct: 80  RPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDC 139

Query: 233 PRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYE-GSPPTPKDTAIIMY 291
           P+V  LI + D +           +E+ P + I     +S       +PP P D A I+Y
Sbjct: 140 PKVVDLIVIIDLVREAVEAK-ALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIY 198

Query: 292 TSGSTGTPKGVVLTHDNMISTLKAFSDAV-HIEPNDVFLGYLPLAHVFELLSESVCLLCG 350
           TSG+TGTPKGV+LTH N+++ +    + +  I P D  L +LPLAH+FE   E    L  
Sbjct: 199 TSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLAL-- 256

Query: 351 VAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKR 410
               Y     +        R    D   + PT +  VP + +++YKG+ EKV++A   +R
Sbjct: 257 ----YGGVTVLFKEDP---RTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRR 309

Query: 411 ALFAFAFEYKRKWAKRGFRC-------PLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDT 463
            LF +A +   K   R            + D++VF + +  LGGR+R  LSGGAPLSP+ 
Sbjct: 310 KLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPEL 369

Query: 464 HELIKVCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNG 503
               +      +++GYGLTET++  +V   +    + + G
Sbjct: 370 LHFFRSLGI-PILEGYGLTETSAVVSVNPPDRF-VLGTVG 407

Length = 613

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  278 bits (714), Expect = 2e-86
 Identities = 134/414 (32%), Positives = 209/414 (50%), Gaps = 36/414 (8%)

Query: 88  DGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVND 147
             + T+     Y V  F D + LGTR         + +G +      G+Y+W ++ +   
Sbjct: 41  PEIGTLHDNFVYAVETFRDYKYLGTR--------IRVDGTV------GEYKWMTYGEAGT 86

Query: 148 EAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGI 207
              A G GL   G      V ++   R EW+I   AC   +   V +Y TLG +A+   +
Sbjct: 87  ARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIV 146

Query: 208 NETEVNIVITTHDLLPKFRNILKLTPRVSTLIY---MEDQLTSTDTTNFKQGIEIVPFKQ 264
           N  EV  +      L    + L   P V  ++     ++ L S  +     G+EIV + +
Sbjct: 147 NHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGT---GVEIVTYSK 203

Query: 265 IVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEP 324
           ++ +G  S   +   PP P+D A I YTSG+TGTPKGVVLTH N+I+ +   S +    P
Sbjct: 204 LLAQGRSSPQPF--RPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYP 261

Query: 325 NDVFLGYLPLAHVFELLSESVCLLCGVAIGY--STPLTMIDTSSKIKRGTKGDASVLHPT 382
           +DV + YLPLAH++E +++ V L  GVA+G+     L ++D           D + L PT
Sbjct: 262 SDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMD-----------DLAALRPT 310

Query: 383 ALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFR-CPLIDKVVFGQT 441
              +VP + +RIY G+   V  +   K  LF  A+  K++  + G    P+ D++VF + 
Sbjct: 311 IFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKI 370

Query: 442 KKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
           K  LGGRVR + SG +PLSPD  E +++C   +V++GYG+TET+   + M   D
Sbjct: 371 KAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGD 424

Length = 651

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score =  228 bits (582), Expect = 3e-67
 Identities = 129/437 (29%), Positives = 216/437 (49%), Gaps = 61/437 (13%)

Query: 90  VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEA 149
           + T   +    V ++ D + LG R+I+   D K           +G Y W+++ +V +E 
Sbjct: 41  ITTAWDIFSKSVEKYPDNKMLGWRRIV---DGK-----------VGPYMWKTYKEVYEEV 86

Query: 150 EAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINE 209
              G  LR+ G EP   V I+     +W++A +AC   ++  V +Y TLG  A+ + ++ 
Sbjct: 87  LQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDH 146

Query: 210 TEVNIVITTHDLLPKFRNIL----KLTPRVSTLIYMEDQLTSTDTTNFKQ-GIEIVPFKQ 264
            E++ V        K + +L    K   R+  ++     +T  ++    Q G++   +  
Sbjct: 147 AEIDFVFVQDK---KIKELLEPDCKSAKRLKAIVSFTS-VTEEESDKASQIGVKTYSWID 202

Query: 265 IVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKA-------FS 317
            +  G E+ S  E +PP P D   IMYTSG++G PKGVVLTH+ + + ++        F 
Sbjct: 203 FLHMGKENPS--ETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFE 260

Query: 318 DAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDAS 377
           D +  +  DV+L +LPLAH+ + + E      G ++GY                  GD +
Sbjct: 261 DKMTHD--DVYLSFLPLAHILDRMIEEYFFRKGASVGY----------------YHGDLN 302

Query: 378 VLH-------PTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFR- 429
            L        PT L  VP + +RI++G+ + +   +P +R +F   ++YK  W  RG+  
Sbjct: 303 ALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSH 362

Query: 430 ---CPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTS 486
               P+ D + F + K  LGGR+RL++SGGAPLS +  E ++V  C  V+QGYGLTET  
Sbjct: 363 KKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLG 422

Query: 487 CATVMHLNDMGNINSNG 503
             T+   ++M  + + G
Sbjct: 423 PTTLGFPDEMCMLGTVG 439

Length = 660

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score =  220 bits (563), Expect = 1e-64
 Identities = 132/394 (33%), Positives = 192/394 (48%), Gaps = 37/394 (9%)

Query: 114 QILAEEDEKQPNGRIFKKYVM-----GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVV 168
           Q  ++  +K PN ++  +  +     G Y W ++ +V D A   G  +RS G  P     
Sbjct: 47  QFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCG 106

Query: 169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNI 228
           I+     EW+IA +AC  Q I  V +Y TLG  A+   IN  EV+I         K  +I
Sbjct: 107 IYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQES---KISSI 163

Query: 229 LKLTPRVS----TLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPK 284
           L   P+ S    T++   D  +       + G+    +++    GS      E  P    
Sbjct: 164 LSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLD---CELPPKQKT 220

Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMIST------LKAFSDAVHIEPNDVFLGYLPLAHVF 338
           D   IMYTSG+TG PKGV+LT+  +I+       L   +D V  E  D +  YLPLAHV+
Sbjct: 221 DICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATE-EDSYFSYLPLAHVY 279

Query: 339 ELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGV 398
           + + E+ C+  G +IG+            I R    D   L PT    VP + DRIY G+
Sbjct: 280 DQVIETYCISKGASIGF--------WQGDI-RYLMEDVQALKPTIFCGVPRVYDRIYTGI 330

Query: 399 HEKVSRASPFKRALFAFAFEYKRKWAKRGFR----CPLIDKVVFGQTKKLLGGRVRLILS 454
            +K+S     ++ LF FA+ YK    ++G +     P +D++VF + K+ LGGRVRL+LS
Sbjct: 331 MQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLS 390

Query: 455 GGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCA 488
           G APL     E ++V  C  + QGYGLTE  SC 
Sbjct: 391 GAAPLPRHVEEFLRVTSCSVLSQGYGLTE--SCG 422

Length = 660

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score =  207 bits (529), Expect = 1e-59
 Identities = 133/413 (32%), Positives = 209/413 (50%), Gaps = 41/413 (9%)

Query: 88  DGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVND 147
           +G+D+   V R  V ++ +   LG R+I+        +G+       G Y W+++ +V D
Sbjct: 42  EGMDSCWDVFRMSVEKYPNNPMLGRREIV--------DGK------PGKYVWQTYQEVYD 87

Query: 148 EAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGI 207
                G  LRS+G +      I+     EW+I+ +AC    +  V +Y TLG  A+   I
Sbjct: 88  IVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFII 147

Query: 208 NETEVNIVITTHDLLPK-FRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIV 266
           + +EV+IV      + + F+     T  + T++                G+ I  + + +
Sbjct: 148 SHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFL 207

Query: 267 KRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST-------LKAFSDA 319
           K G   G +Y+       D   IMYTSG+TG PKGV+++++++++        LK+ + A
Sbjct: 208 KLGE--GKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAA 265

Query: 320 VHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVL 379
           + ++  DV+L YLPLAH+F+ + E   +  G AIG+       D    I+     D   L
Sbjct: 266 LTVK--DVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRG----DVKLLIE-----DLGEL 314

Query: 380 HPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFR----CPLIDK 435
            PT   AVP +LDR+Y G+ +K+S     K+ +F  AF YK    K+G       PL DK
Sbjct: 315 KPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDK 374

Query: 436 VVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCA 488
           +VF + K+ LGG VR+ILSG APL+      ++V  C  V+QGYGLTE  SCA
Sbjct: 375 LVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTE--SCA 425

Length = 666

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  199 bits (509), Expect = 2e-58
 Identities = 100/368 (27%), Positives = 152/368 (41%), Gaps = 113/368 (30%)

Query: 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIP--VV 192
           G ++  ++ ++ +       GL +LG +P   V I AE R EW+IA  A          V
Sbjct: 1   GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAI--LAAGAVPV 58

Query: 193 TIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTN 252
            IY T   E +A+ +N++   +V       P           ++TLIY     TS     
Sbjct: 59  PIYPTSSPEEVAYILNDSGARVVFVEDK--PD---------DLATLIY-----TS----- 97

Query: 253 FKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST 312
                                                    G+TG PKGV+LTH N+++ 
Sbjct: 98  -----------------------------------------GTTGNPKGVMLTHRNLLAQ 116

Query: 313 LKAFSDAVHIEPNDVFLGYLPLAHVFEL-LSESVCLLCGVAIGYSTPL-TMIDTSSKIKR 370
             A  + + + P D  L +LPLAHVFE  L E + L  G  + ++    T+++   +++ 
Sbjct: 117 AAALLEVIPLSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARVNFAESPETLLEDLREVR- 175

Query: 371 GTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRC 430
                     PT   AVP + ++IY G+  KV+ A P KR LF +A              
Sbjct: 176 ----------PTVFFAVPRVWEKIYAGIEAKVAAAGPLKRKLFRWA-------------- 211

Query: 431 PLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHEL---IKVCLCEKVIQGYGLTETTSC 487
                        L GGR+R  +SGGAPL P+  E    + +     +++GYGLTET+  
Sbjct: 212 -------------LGGGRLRFAVSGGAPLPPEVLEFFRALGI----PILEGYGLTETSGV 254

Query: 488 ATVMHLND 495
           ATV    D
Sbjct: 255 ATVNRPGD 262

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  191 bits (488), Expect = 8e-56
 Identities = 86/356 (24%), Positives = 135/356 (37%), Gaps = 61/356 (17%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           ++ ++++ A      LR+LG  P   V I      EW++A  A  K     V +  +L  
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
           E +A+ + ++E  ++IT  +LLPK   +L     +  LI + D     D  + +      
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELL---- 116

Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV 320
                    + + +     P  P D A I+YTSG+TG PKGV+LTH N+++     ++  
Sbjct: 117 ---------AGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERF 167

Query: 321 HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLH 380
            + P D  L  LPL     +      LL G  +       ++   +              
Sbjct: 168 GLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLV------LVPKFTLDPARLLDLIEKYK 221

Query: 381 PTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQ 440
            T L  VP +L  + K   EK    S                                  
Sbjct: 222 VTVLYGVPTLLRLLLKAPEEKKYDLS---------------------------------- 247

Query: 441 TKKLLGGRVRLILSGGAPLSPDT-HELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
                   +RL+LSGG PL P+    L +      ++ GYG TETT  AT     D
Sbjct: 248 -------SLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGD 296

Length = 412

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  152 bits (386), Expect = 1e-40
 Identities = 95/371 (25%), Positives = 159/371 (42%), Gaps = 65/371 (17%)

Query: 136 DYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIY 195
           +Y W    QV D+A      L+SLG EP   + I ++  AEW+IA  A +      V +Y
Sbjct: 6   EYTWA---QVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLY 62

Query: 196 ATLGEEAIAHGINETEVNIVIT----THDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT 251
            TL  E I + +  ++   +        D +        +   + T+I       ST   
Sbjct: 63  PTLTAETIRYVLEHSDAKALFVGKLDDWDAMKAG-----VPEGLPTIILF---PYSTLKD 114

Query: 252 NFKQGIEIVPFKQIVKRGSESGSRYEGSP-PTPKDTAIIMYTSGSTGTPKGVVLTHDNMI 310
           ++K       +  ++          +G P P P+D A I+YTSG+TG PKGV+L+     
Sbjct: 115 HYK-------WDDLLAA----TEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFGAFA 163

Query: 311 STLKAFSDAVHIEPNDVFLGYLPLAHVFE-LLSESVCLLCGVAIGYSTPLTMIDT-SSKI 368
              +   + + + PND  L YLPLAH+ E ++ E   L  G  + +   L   DT ++ +
Sbjct: 164 FAAQGTIEIIGLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFVESL---DTFAADL 220

Query: 369 KRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGF 428
           +R          PT   +VP +  +  +G+  K+         L                
Sbjct: 221 QR--------ARPTVFFSVPRLWTKFQQGILAKLPPE-----KLNLL------------L 255

Query: 429 RCPLIDKVVFGQTKKLLG-GRVRLILSGGAPLSPDT---HELIKVCLCEKVIQGYGLTET 484
           + P++  +V  +  K LG  + RL  SG AP+ P     +  + + +CE    GYG+TE 
Sbjct: 256 KIPILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGLPICE----GYGMTEN 311

Query: 485 TSCATVMHLND 495
            + +T+ +  D
Sbjct: 312 FAYSTLNYPGD 322

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  149 bits (379), Expect = 2e-39
 Identities = 84/372 (22%), Positives = 142/372 (38%), Gaps = 61/372 (16%)

Query: 127 RIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFK 186
           R    ++       ++ +++  A      L++LG +P   V I      E++IA  A  +
Sbjct: 27  RPALIFLGRGGRL-TYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALR 85

Query: 187 QNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLT 246
                V +   L    +A+ +N+    ++IT+ +       + +  P V  ++ + D   
Sbjct: 86  AGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADD 145

Query: 247 STDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTH 306
               T           + +   G       +  P  P D A ++YTSG+TG PKGVVLTH
Sbjct: 146 RLPIT----------LEALAAEGPGP--DADARPVDPDDLAFLLYTSGTTGLPKGVVLTH 193

Query: 307 DNMISTLKAFSDAV--HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDT 364
            N+++     + A+   + P+DV L +LPL H+F L    V LL  +  G    L ++  
Sbjct: 194 RNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGL---IVGLLAPLLGG--GTLVLLSP 248

Query: 365 SSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWA 424
                            T L+ VP  L  +       +                      
Sbjct: 249 EPFDPEEVLWLIEKYKVTVLSGVPTFLREL-------LDNPEKDDDD------------- 288

Query: 425 KRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHE-LIKVCLCEKVIQGYGLTE 483
                               L   +RL+LSGGAPL P+  E   +      +++GYGLTE
Sbjct: 289 --------------------LSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTE 328

Query: 484 TTSCATVMHLND 495
           T+   T+   +D
Sbjct: 329 TSPVVTINPPDD 340

Length = 534

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  130 bits (328), Expect = 2e-32
 Identities = 100/394 (25%), Positives = 165/394 (41%), Gaps = 50/394 (12%)

Query: 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAA-QACFKQNIPVVT 193
             +   ++ Q  +      K    LG E  H+V I      EW IAA  A F   I  V 
Sbjct: 4   DGWHTLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGI-AVG 62

Query: 194 IYATLGEEAIAHGINETEVNI-VITTHDLLPKFRNILKLTPRVSTLIYM-------EDQL 245
           IY T   EA  +    +E NI V+     L K   I    P +  +I         E  L
Sbjct: 63  IYTTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQYREPLKEKEPNL 122

Query: 246 TSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLT 305
            S     F +    +P +Q+                 P     ++YTSG+TG PKGV+L+
Sbjct: 123 YSWK--EFMELGRSIPDEQLDAIIESQ---------KPNQCCTLIYTSGTTGMPKGVMLS 171

Query: 306 HDNMISTLKAFSDAVHIEP--NDVFLGYLPLAHV-FELLSESVCLLCGVAIGYSTP---- 358
           HDN+  T KA    + +     +  + YLPL+H+  ++L   + +  G  + ++ P    
Sbjct: 172 HDNITWTAKAAVKHMDLRTVGQESVVSYLPLSHIAAQILDIWLPISVGGCVYFAQPDALK 231

Query: 359 LTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFA-- 416
            T++ T  +++           PTA   VP + ++I + +    ++++  KR + ++A  
Sbjct: 232 GTLVKTLREVR-----------PTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKG 280

Query: 417 --FEYKRKW---AKRGFRCP-LIDKVVFGQTKKLLG-GRVRLILSGGAPLSPDTHELIKV 469
              E   K          C  L  K+VF + +K LG  R +   +G AP+S +T E   +
Sbjct: 281 VGLETNLKLMGGESPPPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEFF-L 339

Query: 470 CLCEKVIQGYGLTETTSCATVMHLNDMGNINSNG 503
            L   +++ YG++ET+   TV        + S G
Sbjct: 340 SLNIPIMELYGMSETSGPHTV-SNPQNYRLLSCG 372

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  116 bits (292), Expect = 6e-28
 Identities = 78/362 (21%), Positives = 130/362 (35%), Gaps = 76/362 (20%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           +F  +  +A    KGLR LG +    V + +    E+      C      V     +   
Sbjct: 12  TFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYTP 71

Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
           + +AH +  ++  ++    D L K +   K    V  +I ++                ++
Sbjct: 72  DELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDS-----------APDGVL 120

Query: 261 PFKQIVKRGSESGSRYEGSPPT----PKDTAIIMYTSGSTGTPKGVVLTHDNMISTL--- 313
             + +++     G+  E  P        DTA ++Y+SG+TG PKGV+L+H N+I+ L   
Sbjct: 121 RIEDLLE--PRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQV 178

Query: 314 KAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYST---PLTMIDTSSKIKR 370
           +          NDV L +LP  H + L +    LLCG  +         T +    K K 
Sbjct: 179 QDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLASLLCGATVIIMPKFDSETFLKLIEKYK- 237

Query: 371 GTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRC 430
                      T+L  VP I   +                                  + 
Sbjct: 238 ----------VTSLFLVPPIAVAL---------------------------------AKS 254

Query: 431 PLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEK-VIQGYGLTETTSCAT 489
           PL+DK      + +  G         APLS +  E ++       + QGYG+TET    T
Sbjct: 255 PLVDKYDLSSLRVIFSG--------AAPLSKELQEELRKRFPNTTIKQGYGMTETGPATT 306

Query: 490 VM 491
           + 
Sbjct: 307 LT 308

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  113 bits (285), Expect = 5e-27
 Identities = 45/201 (22%), Positives = 79/201 (39%), Gaps = 15/201 (7%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQN---IPVVTIYAT 197
           ++ ++N         L +LG      V I+A     W+IAA    K     +P+ T Y  
Sbjct: 32  TYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYT- 90

Query: 198 LGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGI 257
             +EA A+ +   +   +      L    +     P +  ++  E         +     
Sbjct: 91  -ADEA-AYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICET------EEDDPHTE 142

Query: 258 EIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS 317
           ++  F   +  G             P D A I++TSG+TG PKG +LTH  ++S    ++
Sbjct: 143 KMKTFTDFLAAGDP---AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWA 199

Query: 318 DAVHIEPNDVFLGYLPLAHVF 338
           + + +   D +L   P  HVF
Sbjct: 200 EYLGLTEGDRYLAANPFFHVF 220

Length = 513

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  112 bits (282), Expect = 1e-26
 Identities = 75/320 (23%), Positives = 119/320 (37%), Gaps = 74/320 (23%)

Query: 179 IAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRN-ILKLTPRVST 237
           +A     K  +PV+  + T GEE +     +  +  VIT+   L K +   L +      
Sbjct: 49  LALLLAGK--VPVMLNF-TAGEEGLRSACKQAGIKTVITSRAFLEKLKLEGLVVLLEGVR 105

Query: 238 LIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTG 297
           ++Y+ED        +    ++     ++             +   P D A+I++TSGS G
Sbjct: 106 IVYLEDLR---AKISKADKLKAFLAAKLPPALLRLFL----AGAKPDDPAVILFTSGSEG 158

Query: 298 TPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYST 357
            PKGVVL+H N+++ +   +  + +   DV LG LPL H F L   +V LL         
Sbjct: 159 LPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALPLFHAFGL---TVTLL--------L 207

Query: 358 PLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFA--- 414
           PL              G   V +P  L           K + E +         L     
Sbjct: 208 PLLT------------GLRVVYYPNPLD---------AKKIAELIRDYKA--TILCGTPT 244

Query: 415 FAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEK 474
           F   Y R      F                    +RL+++G   L   T EL +    EK
Sbjct: 245 FLRGYARNAHPEDFS------------------SLRLVVAGAEKLPEATRELFE----EK 282

Query: 475 ----VIQGYGLTETTSCATV 490
               +++GYG TE +   +V
Sbjct: 283 FGIRILEGYGATECSPVISV 302

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  109 bits (276), Expect = 7e-26
 Identities = 72/369 (19%), Positives = 128/369 (34%), Gaps = 116/369 (31%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           ++ ++++ ++ F   L+ LG +    V +      ++ IA     K    VV +      
Sbjct: 26  TYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYTP 85

Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
             + H +N++   ++I                                            
Sbjct: 86  RELEHQLNDSGAKVLIVAI----------------------------------------- 104

Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV 320
            F+  +  G+           +P D A++ YT G+TG PKG +LTH N+++ ++  +  V
Sbjct: 105 SFEDALASGAPLP---LPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWV 161

Query: 321 H--IEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYS-------TPLTMIDTSSKIKRG 371
               E  D FL  LPL H+F L   +V +L G+ +G +        P+ ++    + +  
Sbjct: 162 KDLREGEDRFLTALPLFHIFGL---TVNMLLGLRLGATNVLVPNFRPINVLKEIKRYR-- 216

Query: 372 TKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCP 431
                     T    VP     +Y      +     FK+  F                  
Sbjct: 217 ---------FTIFPGVPT----LYNA----LLNHPEFKKYDF------------------ 241

Query: 432 LIDKVVFGQTKKLLGGRVRLILSGGAPLSPDT----HELIKVCLCEKVIQGYGLTETTSC 487
                            +RL +SGGAPL  +      E         +++GYGLTET+  
Sbjct: 242 ---------------SSLRLCISGGAPLPVEVAERFEEKTGA----PLVEGYGLTETSPV 282

Query: 488 ATVMHLNDM 496
            TV  L+  
Sbjct: 283 TTVNPLDGE 291

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  103 bits (258), Expect = 3e-24
 Identities = 58/210 (27%), Positives = 87/210 (41%), Gaps = 57/210 (27%)

Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
           D A I+YTSG+TG PKGVVL+H N+++  +A + A+ +   DV L  LPL HV    S  
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60

Query: 345 -VCLLCGVAI----GYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVH 399
              LL G  +    G+  PL+ ++   + +            T L  VP           
Sbjct: 61  LGALLAGGTVVLYEGFPFPLSFLELIEQYR-----------VTVLFGVP----------- 98

Query: 400 EKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPL 459
                      AL   A +     +                        +RL++SGG PL
Sbjct: 99  -------TLYDALAKAAEDRGYDLS-----------------------SLRLLISGGEPL 128

Query: 460 SPDTHELIKVCLCEKVIQGYGLTETTSCAT 489
           SP+  E  +      +++GYGLTET+   +
Sbjct: 129 SPELLERFEERPGAPILEGYGLTETSVVTS 158

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  101 bits (253), Expect = 8e-23
 Identities = 81/396 (20%), Positives = 140/396 (35%), Gaps = 90/396 (22%)

Query: 114 QILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAET 173
           +IL     K P+               ++ ++++        LR+LG +    V +F   
Sbjct: 10  RILRHGARKHPDKEA---VYFDGRRT-TYAELDERVNRLANALRALGVKKGDRVAVFDWN 65

Query: 174 RAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTP 233
             E++ A  A  K    +  I   L  E IA+ +N+ E  +V+   + +P    IL   P
Sbjct: 66  SHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLP 125

Query: 234 RVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTS 293
            V T+I   D              E+  +++++   S++   ++       D A ++YTS
Sbjct: 126 TVRTVIVEGD------GPAAPLAPEVGEYEELLAAASDT---FDFPDIDENDAAAMLYTS 176

Query: 294 GSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVC---LLCG 350
           G+TG PKGVVL+H N+     A    + +  +DV+L  +P+ HV       +    L+ G
Sbjct: 177 GTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAW---GLPYLALMAG 233

Query: 351 VAIGY------STPLTMIDTSSKIKRGTKGDASVLH--PTALTAV---PLILDRIYKGVH 399
                         L +I+T    +R T          PT    +   P      +  + 
Sbjct: 234 AKQVIPRRFDPENLLDLIET----ERVT-----FFFAVPTIWQMLLKAPRAYFVDFSSLR 284

Query: 400 EKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPL 459
             +   +    AL     E+K K     F   L+                          
Sbjct: 285 LVIYGGAALPPALLR---EFKEK-----FGIDLV-------------------------- 310

Query: 460 SPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
                            QGYG+TET+   +V+   D
Sbjct: 311 -----------------QGYGMTETSPVVSVLPPED 329

Length = 521

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 93.8 bits (234), Expect = 2e-20
 Identities = 56/238 (23%), Positives = 99/238 (41%), Gaps = 41/238 (17%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           ++ +++  A A    L++LG  P   V++ A    +++ A   C       V        
Sbjct: 25  TYAELDRRARAIAARLQALGA-PGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRL 83

Query: 201 ----EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQG 256
                 +A  + +     V+TT  +L   R  L     +  L+   D L +         
Sbjct: 84  GRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLLIAADDLAA--------- 134

Query: 257 IEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAF 316
                          + + +   PP P D A + YTSGSTG PKGV++TH N+++ L+A 
Sbjct: 135 --------------LAAADWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAI 180

Query: 317 SDAVHIEPNDVFLGYLPLAH----VFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKR 370
           + A  ++P+DV + +LPL H    +  LL     L  G       P+ ++   + ++R
Sbjct: 181 ARAFGLDPDDVGVSWLPLYHDMGLIGGLLQ---PLYAGF------PVVLMSPLAFLRR 229

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 92.7 bits (230), Expect = 7e-20
 Identities = 67/377 (17%), Positives = 121/377 (32%), Gaps = 87/377 (23%)

Query: 114 QILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAET 173
            +  E+    P+       ++   +  ++ +++  A    + L SLG  P   V I A+ 
Sbjct: 231 LLFEEQAATTPDAV----ALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADR 286

Query: 174 RAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTP 233
             E ++A  A  K     V +      E +A+ + ++   +++T   L            
Sbjct: 287 SLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDV------- 339

Query: 234 RVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTS 293
                                 G+  +     +    ++    +         A I+YTS
Sbjct: 340 ----------------------GLPGLALDDALSEIPDTDPIPQALLGD--ALAYIIYTS 375

Query: 294 GSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPL---AHVFELLSESVCLLCG 350
           GSTG PKGV + H  + + L        ++ +D  L    L   A VFE+      LL G
Sbjct: 376 GSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIF---GALLEG 432

Query: 351 VAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKR 410
             +  +  L  +D ++ ++       +VL    L    L+L                   
Sbjct: 433 ARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLA------------------ 474

Query: 411 ALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVC 470
           AL                                   R+R +LSGG  L     + +   
Sbjct: 475 ALAPDLISPC--------------------------ERLRQLLSGGEALPLALVQRLLQL 508

Query: 471 LCE--KVIQGYGLTETT 485
                +++  YG TE T
Sbjct: 509 AALARRLLNLYGPTEAT 525

Length = 642

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score = 92.1 bits (229), Expect = 1e-19
 Identities = 71/254 (27%), Positives = 114/254 (44%), Gaps = 22/254 (8%)

Query: 256 GIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKA 315
           GI I+ F  + K  +   + Y+     P     I+YTSG++G PKGV+L++ N+ +T+  
Sbjct: 279 GISIILFDDMTKNKT---TNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVP 335

Query: 316 FSDAVHIE--PNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSK-IKRGT 372
                  +       L YLP++H++E +   +  + G  I         +  SK I   +
Sbjct: 336 LCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTI---------NIWSKDINYFS 386

Query: 373 KGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPL 432
           K D        L  VP + +RIY  +  +++   P KR L       ++     GF    
Sbjct: 387 K-DIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGF-SKF 444

Query: 433 IDKVVFGQTKKL---LGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCAT 489
           ++ +    + K+   +   + +IL+GG  LSP   E + V L     QGYGLTETT    
Sbjct: 445 LEGI-THISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIF 503

Query: 490 VMHLNDMGNINSNG 503
           V H +D  N  S G
Sbjct: 504 VQHADDN-NTESIG 516

Length = 746

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 91.6 bits (228), Expect = 1e-19
 Identities = 63/363 (17%), Positives = 114/363 (31%), Gaps = 79/363 (21%)

Query: 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTI 194
              E  ++  +  E       L+ LG      V I+     E +IA  A  +       +
Sbjct: 37  LFREL-TYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVV 95

Query: 195 YATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFK 254
              L  EA+A  I +    ++I         + I  L                       
Sbjct: 96  SPGLSAEAVADRIADLGPKVLIADDGTFRNGKEI-ALLEDA------------------- 135

Query: 255 QGIEIVPFKQIVKRG--------SESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTH 306
               ++    +V R          ++  ++E  P    D   ++YTSG+TG PKG+V +H
Sbjct: 136 --DAVLSSVVVVPRLGLWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSH 193

Query: 307 DNMISTLKAFSDAVH-IEPNDVFLGYLPLAHVFELLSESV-CLLCGVAIGYSTPLTMIDT 364
              +   +  +     + P D F        ++ L       L  G              
Sbjct: 194 GGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATT----------- 242

Query: 365 SSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWA 424
                        VL+       P   +R+++ + +       +K  +F  +  + R+  
Sbjct: 243 -------------VLYDGRPFYSP---ERLWEALEK-------YKVTIFGTSPTFLRRLM 279

Query: 425 KRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTET 484
           K G              +      +R++ S G PL+P+  E     L   ++  YG TET
Sbjct: 280 KLGLG------------EPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTET 327

Query: 485 TSC 487
              
Sbjct: 328 GMG 330

Length = 528

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 88.7 bits (220), Expect = 1e-18
 Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 7/195 (3%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           ++  +++   A   GLR LG      V I+ + R E + A           V I   L  
Sbjct: 27  TYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKA 86

Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
           E +AH + +  V +++T+ + L      L     + TLI + D       +    G E  
Sbjct: 87  EQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVGD---PAHASEGHPGEEPA 143

Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV 320
            + ++       G      P    D A I+YTSGSTG PKGVVL+H N+++  ++ +  +
Sbjct: 144 SWPKL----LALGDADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL 199

Query: 321 HIEPNDVFLGYLPLA 335
              P+D  L  LPL+
Sbjct: 200 ENRPDDRLLAVLPLS 214

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 88.4 bits (220), Expect = 2e-18
 Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 197 TLGEEAIAHGINETEVNIVITTHDLLPKF--RNILKLTPRVSTLIYMED---QLTSTDTT 251
           T  E A+   I + ++  VIT+   L K   +      P    +IY+ED   +++  D  
Sbjct: 698 TASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKISKVDKL 757

Query: 252 NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIS 311
                  ++P + +         R  G    P DTA I+++SGS G PKGV+L+H N++S
Sbjct: 758 TALLAARLLPARLL--------KRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILS 809

Query: 312 TLKAFSDAVHIEPNDVFLGYLPLAHVF 338
            ++  SD  ++  +DV L  LP  H F
Sbjct: 810 NIEQISDVFNLRNDDVILSSLPFFHSF 836

Length = 1146

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 84.3 bits (209), Expect = 3e-17
 Identities = 64/239 (26%), Positives = 96/239 (40%), Gaps = 71/239 (29%)

Query: 259 IVPFKQIVKRGSESGSRYEGSPP--TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTL--- 313
            VP++ +V   +  G   + S P  TP D A+I+YTSG+TG PKG  LTH N+ +     
Sbjct: 193 TVPWETLV-DAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQG 251

Query: 314 KAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIG--------YSTPLTMIDTS 365
           KA+   +  +  +  L  LP+ H + L   ++CL   V+IG            L +    
Sbjct: 252 KAWVPGLG-DGPERVLAALPMFHAYGL---TLCLTLAVSIGGELVLLPAPDIDLIL---- 303

Query: 366 SKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAK 425
             +K+          PT L  VP + ++I +                            +
Sbjct: 304 DAMKKHP--------PTWLPGVPPLYEKIAEAA-------------------------EE 330

Query: 426 RGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTET 484
           RG     +D          L G VR   SG   L   T EL +      +++GYGLTET
Sbjct: 331 RG-----VD----------LSG-VRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTET 373

Length = 573

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 83.1 bits (206), Expect = 4e-17
 Identities = 67/354 (18%), Positives = 120/354 (33%), Gaps = 85/354 (24%)

Query: 144 QVNDEAEAFGKGLRSLGQ-EPRHNVVIFAETRAEWMIAAQ-ACFKQNIPVVTIYATLGEE 201
           ++++ A    + LR+ G   P   V +  E R+  ++ A  A  K     V +      E
Sbjct: 4   ELDERANRLARHLRAAGGVGPGDRVAVLLE-RSAELVVAILAVLKAGAAYVPLDPAYPAE 62

Query: 202 AIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVP 261
            +A  + +    +++T   L             +   + + D L      +        P
Sbjct: 63  RLAFILEDAGARLLLTDSALAS-------RLAGLVLPVILLDPLELAALDD--APAPPPP 113

Query: 262 FKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVH 321
                            +P  P D A ++YTSGSTG PKGVV+TH ++++ L   +    
Sbjct: 114 D----------------APSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYG 157

Query: 322 IEPNDVFLGYLPLAH---VFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASV 378
           ++P+D  L +  L+    V E+      LL G  +     +   +   +           
Sbjct: 158 LDPDDRVLQFASLSFDASVEEIF---GALLAGATL-----VVPPEDEERDDAALLAALIA 209

Query: 379 LHP-TALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVV 437
            HP T L   P +L  +   +   ++                                  
Sbjct: 210 EHPVTVLNLTPSLLALLAAALPPALA---------------------------------- 235

Query: 438 FGQTKKLLGGRVRLILSGGAPLSPDTHE-LIKVCLCEKVIQGYGLTETTSCATV 490
                      +RL++ GG  L+P   +         ++I  YG TETT  +T 
Sbjct: 236 ----------SLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTA 279

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 81.5 bits (202), Expect = 1e-16
 Identities = 58/212 (27%), Positives = 78/212 (36%), Gaps = 60/212 (28%)

Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
           D A+I+YTSG+TG PKGVVLTH N+ +  +A  +A     +DV L  LPL HV  L    
Sbjct: 89  DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLLHALPLHHVHGLF--- 145

Query: 345 VCLLCGVAIGYSTPLTMIDTSSKIKRG----TKGDASVLHP--TALTAVPLILDRIYKGV 398
             L C +  G          +S          + DA  L P  T    VP I        
Sbjct: 146 NALHCPLWAG----------ASVEFLPRFDPQERDALRLLPRITVFMGVPTI-------- 187

Query: 399 HEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAP 458
                               Y R          L++   F          +RL +SG A 
Sbjct: 188 --------------------YTR----------LLEHYEFDDAAAAAARNLRLFVSGSAA 217

Query: 459 LSPDTHELIKVCLCEKVIQGYGLTET---TSC 487
           L     E  +      +++ YG+TET    S 
Sbjct: 218 LPVPVLERWEERTGHTLLERYGMTETGMALSN 249

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 80.8 bits (200), Expect = 3e-16
 Identities = 44/223 (19%), Positives = 83/223 (37%), Gaps = 25/223 (11%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           ++ ++         GL + G      V++ +    E+ +   A       V T       
Sbjct: 34  TYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTP 93

Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
             IA  + ++   + ITT +L  K  ++      +  ++ ++               +  
Sbjct: 94  AEIAKQVKDSGAKLAITTSELAEKLASL-----ALEPVVLLDS-------------ADDG 135

Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV 320
               I                   D A + Y+SG+TG  KGV+LTH N+I+ +       
Sbjct: 136 S-AAIDDLLFADEPEPPVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIANVAQLVAGE 194

Query: 321 HI--EPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTM 361
               +  DV L  LP+ H++ L   +V LL  + +G +T + M
Sbjct: 195 GPNFDREDVTLCVLPMFHIYGL---TVILLALLRLG-ATVVVM 233

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 80.0 bits (198), Expect = 6e-16
 Identities = 56/211 (26%), Positives = 87/211 (41%), Gaps = 33/211 (15%)

Query: 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAA-QACFKQN-IPV- 191
           G  E++S+ ++ +EAE    GLR+LG +P  + VI    R E  + A  AC     +PV 
Sbjct: 35  GSEEFQSYAELLEEAERILAGLRALGLKPG-DSVILQLERNEDFVTAFWACVLGGFVPVP 93

Query: 192 VTIYATLGEEAIA----HGINET-EVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLT 246
           V +  T  E   A      I E     +++T   L+     +       +  +   ++L 
Sbjct: 94  VAVPPTYDEPNAAVAKLRNIWELLGSPVILTDAALVAALAGLRTRAGLEALRVLAIEEL- 152

Query: 247 STDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTH 306
                                    +       P  P D A+++ TSGSTG PK VVLTH
Sbjct: 153 -----------------------RSAPPDAPLHPARPDDPALLLLTSGSTGVPKCVVLTH 189

Query: 307 DNMISTLKAFSDAVHIEPNDVFLGYLPLAHV 337
            N+++            P+DV L ++PL HV
Sbjct: 190 RNILARSAGTVQVNGFTPDDVSLNWMPLDHV 220

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 78.1 bits (193), Expect = 2e-15
 Identities = 78/353 (22%), Positives = 121/353 (34%), Gaps = 105/353 (29%)

Query: 156 LRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIV 215
           LR+LG      + +  +   +W+IA  AC +  I  + I      +   H +N+   +++
Sbjct: 19  LRALGV---KRIALALDNSIDWVIADLACLQAGIVCIPIPHFFSAQQTQHLLNDAGADLL 75

Query: 216 ITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQI-VKRGSESGS 274
           I+         +                       T F    E +               
Sbjct: 76  ISDDPDAASALH-----------------------TPFATLGEDLYIALRPSAN------ 106

Query: 275 RYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPL 334
                   P  TA I YTSGSTG PKGV L+   + +  ++ ++A+ I   +  L  LPL
Sbjct: 107 ----PVELPAGTAKITYTSGSTGQPKGVCLSAAALETVAQSLAEAIAILEPERHLCLLPL 162

Query: 335 AHVFELLSESVCLLCGVAIGYSTPLTM---IDTSSKIKRGTKGDASVLHPTALTAVPLIL 391
           A + E +            G   PL M   +      + G  G +S L P    A     
Sbjct: 163 ATLLENI-----------AGVYAPLLMGATVILVPLAELGLSG-SSGLDPAQFVAA---- 206

Query: 392 DRIYKGVHEKVSRASP--------FKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKK 443
                     +SR  P           AL A          ++G   P            
Sbjct: 207 ----------LSRWQPHSLILVPQLLMALVA--------AVEQGPLPP------------ 236

Query: 444 LLGGRVRLILSGGAPLSPDTHELIKVC--LCEKVIQGYGLTETTSCATVMHLN 494
                +R +  GGA +SP    L++    L   V +GYGL+E   CA+V+ LN
Sbjct: 237 ---ESLRFVAVGGARVSP---SLLQRARALGLPVYEGYGLSE---CASVVSLN 280

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 75.7 bits (187), Expect = 6e-15
 Identities = 54/215 (25%), Positives = 79/215 (36%), Gaps = 61/215 (28%)

Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLS 342
           P D A+I++TSG+TG PKGV LTH N++++ +  + +  + P+D  L  +PL H+  L  
Sbjct: 1   PDDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIHGL-- 58

Query: 343 ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASV-------LHPTALTAVPLILDRIY 395
             V LL  +  G S                K  AS           T  +AVP I     
Sbjct: 59  -IVSLLATLLAGGSVVCP-----------PKFSASKFWDDIAKYRVTWYSAVPTIH---- 102

Query: 396 KGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSG 455
                         + L           AK     P                R+R I S 
Sbjct: 103 --------------QILLKT--------AKPNPGKPPP--------------RLRFIRSA 126

Query: 456 GAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATV 490
            APL P   + ++      V++ YG+TE       
Sbjct: 127 SAPLPPAVLDRLEKRFGVPVLEAYGMTEAAHQIAS 161

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 76.5 bits (189), Expect = 6e-15
 Identities = 78/366 (21%), Positives = 126/366 (34%), Gaps = 124/366 (33%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFK----QNIPVVTIYA 196
           ++ +++D A+     L  LG  P   V        E+++   AC +     N P+V IY 
Sbjct: 3   TYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVIN-PIVPIY- 60

Query: 197 TLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQG 256
              E  +   + +    ++        +FR                              
Sbjct: 61  --RERELGFILRQARARVLFVPD----EFR------------------------------ 84

Query: 257 IEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAF 316
                           G  Y      P D A+++YTSG+TG PKGV+ TH+ +++ ++++
Sbjct: 85  ----------------GFDYAA---MPDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSY 125

Query: 317 SDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDA 376
            + + + P+DV L   PLAH+            G   G   PL +            G  
Sbjct: 126 VERLGLTPDDVVLMPSPLAHIT-----------GFLYGLELPLLL------------GAT 162

Query: 377 SVLH----PTALTAVPLILDRIYKGVHEKVS---RASPFKRALFAFAFEYKRKWAKRGFR 429
            VL     P    A+ LI +         V+    A+PF   L A A             
Sbjct: 163 VVLQDRWDPAR--ALELIRE-------HGVTFTMGATPFLADLLAAA------------- 200

Query: 430 CPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCAT 489
                          L   +R+ L GGAP+  +        L  KV++ YG+TE     T
Sbjct: 201 ---------DAAGPDL-PSLRVFLCGGAPVPRELARRAAEALGAKVVRAYGMTE-VPLVT 249

Query: 490 VMHLND 495
           V   +D
Sbjct: 250 VGTPDD 255

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 75.4 bits (186), Expect = 2e-14
 Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 20/212 (9%)

Query: 141 SFNQVNDEAEAFGKGL-RSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLG 199
           S+ ++ +EAE     L +  G      V+++ +   +++IA  A  + N  VV +     
Sbjct: 37  SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96

Query: 200 EEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLI------YMEDQ--------L 245
           EE +AH + ++   + I   +L PK         R+  +I      Y+  +        L
Sbjct: 97  EEELAHYVTDSGARVAIVGSELAPKVAP-AVGNLRLRHVIVAQYSDYLPAEPEIAVPAWL 155

Query: 246 TSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLT 305
            +           +V +K+ +  G        G    P D A++ YTSG+TG PKG + T
Sbjct: 156 RAEPPLQALAPGGVVAWKEALAAGLAPPPHTAG----PDDLAVLPYTSGTTGVPKGCMHT 211

Query: 306 HDNMISTLKAFSDAVHIEPNDVFLGYLPLAHV 337
           H  +++         +  P  V L  LPL HV
Sbjct: 212 HRTVMANAVGSVLWSNSTPESVVLAVLPLFHV 243

Length = 546

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 74.0 bits (183), Expect = 3e-14
 Identities = 40/166 (24%), Positives = 60/166 (36%), Gaps = 32/166 (19%)

Query: 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPL---AHVF 338
            P D A ++YTSGSTG PKGV++ H  +++ L    +   +   D  L +      A V+
Sbjct: 91  DPDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVLQFASFSFDASVW 150

Query: 339 ELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHP-------TALTAVPLIL 391
           E+      LL G        L +             D   L         T L  VP +L
Sbjct: 151 EIF---PPLLSGAT------LVLAP------PEVLRDPEALAELLREHRITVLHLVPSLL 195

Query: 392 DRIYKGVHEKVSRASPFKRALF----AFAFEYKRKWAKRGFRCPLI 433
             +   +      A P  R +     A   E  R+W +      L+
Sbjct: 196 RAL---LDALEPAALPSLRLVIVGGEALPAELVRRWRELFPGARLV 238

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 74.3 bits (183), Expect = 4e-14
 Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 15/203 (7%)

Query: 126 GRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACF 185
           GR  K  +  D    ++ ++ +E   +G  LR LG E  + V++      E+  A     
Sbjct: 17  GRGDKIALYYDDGSLTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAI 76

Query: 186 KQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQL 245
           K     V I   L  +   + +N++   +++ + +L    +  L+  P +  +I +    
Sbjct: 77  KIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHVIVVGGAG 136

Query: 246 TSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLT 305
                           + Q++   +E     E +  +  D A  +Y+SGSTG PKGVV  
Sbjct: 137 PGAL-----------SYAQLIATAAEEL---EAAATSADDMAFWLYSSGSTGRPKGVVHL 182

Query: 306 HDNMISTLKAFSDAV-HIEPNDV 327
           H +M+ T +A++  V  I  +DV
Sbjct: 183 HHDMLVTAEAYAKNVLGITEDDV 205

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 72.2 bits (178), Expect = 9e-14
 Identities = 24/56 (42%), Positives = 35/56 (62%)

Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVF 338
           P D A+I YTSG+TG PKG +LTH N+++   + +  + +   D  L  +PL HVF
Sbjct: 1   PDDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVF 56

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 72.6 bits (179), Expect = 1e-13
 Identities = 50/211 (23%), Positives = 86/211 (40%), Gaps = 35/211 (16%)

Query: 133 VMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVV 192
           V GD    ++ ++N+ A    + LR+ G  P   V +  E   E ++A  A  K     V
Sbjct: 7   VYGDRSL-TYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYV 65

Query: 193 TIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTN 252
            +      E +A  + ++   +++T   L P  R           L+ +E++L + D   
Sbjct: 66  PLDPAYPAERLAFMLEDSGARVLLTDESLAPLAR------ADQLPLVILEEELDAEDAGP 119

Query: 253 FKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST 312
                                           D A +MYTSGSTG PKGV + H  ++  
Sbjct: 120 ------------------------PAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRL 155

Query: 313 LKAFSDAVHIEPNDVFLGYLPL---AHVFEL 340
           ++  ++ + ++P+D FL   PL   A  FE+
Sbjct: 156 VRN-TNYIALDPDDRFLQLSPLSFDASTFEI 185

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 84/328 (25%), Positives = 136/328 (41%), Gaps = 95/328 (28%)

Query: 183 ACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTL--IY 240
           A  ++ IP +  Y T G + +   I   E+  + T+   L K   +  L  +++ +  +Y
Sbjct: 275 ASLRRRIPAMMNY-TAGVKGLTSAITAAEIKTIFTSRQFLDK-GKLWHLPEQLTQVRWVY 332

Query: 241 MEDQLTSTDTTNFKQGI---EIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTG 297
           +ED L    TT  K  I    ++P    VK+              P+D A+I++TSGS G
Sbjct: 333 LED-LKDDVTTADKLWIFAHLLMPRLAQVKQ-------------QPEDAALILFTSGSEG 378

Query: 298 TPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYST 357
            PKGVV +H ++++ ++         PND F+  LPL H F           G+ +G  T
Sbjct: 379 HPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSF-----------GLTVGLFT 427

Query: 358 PLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAF 417
           PL    T +++          L+P+ L          Y+ V E V               
Sbjct: 428 PLL---TGAEV---------FLYPSPLH---------YRIVPELV--------------- 451

Query: 418 EYKRKWAKRGFRCPLIDKVVFGQTKKLLG-----------GRVRLILSGGAPLSPDTHEL 466
            Y R        C     V+FG T   LG            R+R +++G   L   T +L
Sbjct: 452 -YDRN-------C----TVLFG-TSTFLGNYARFANPYDFARLRYVVAGAEKLQESTKQL 498

Query: 467 IKVCLCEKVIQGYGLTETTSCATVMHLN 494
            +     ++++GYG+TE   CA V+ +N
Sbjct: 499 WQDKFGLRILEGYGVTE---CAPVVSIN 523

Length = 718

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 71.1 bits (175), Expect = 3e-13
 Identities = 25/53 (47%), Positives = 36/53 (67%)

Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHV 337
           DTA I+YTSG+TG PKGV+LTH  ++   +  +  + + P+DV L  LPL H+
Sbjct: 82  DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHI 134

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 71.9 bits (177), Expect = 3e-13
 Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 15/171 (8%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVT-IYATLG 199
           ++ ++ + +  F   L+ LG E    V IF     E   A     K N  +V  ++    
Sbjct: 75  TYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALK-NGAIVGPLFEAFM 133

Query: 200 EEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEI 259
           EEA+   + ++E  ++ITT  LL   R      P +  ++ + + +     T        
Sbjct: 134 EEAVRDRLEDSEAKVLITTPALLE--RKPADDLPSLKHVLLVGEDVEEGPGT-------- 183

Query: 260 VPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMI 310
           + F  ++++ S+    ++      +D AI+ YTSGSTG PKGV+  H+ M+
Sbjct: 184 LDFNALMEQASDE---FDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAML 231

Length = 570

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 70.8 bits (174), Expect = 4e-13
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLS 342
           P D A I ++SGSTG PKGV+LTH N+++ ++A  +A  I   DVFL ++PL H   L+ 
Sbjct: 105 PDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEITSEDVFLSWMPLTHDMGLIG 164

Query: 343 -ESVCLLCGV 351
                   G+
Sbjct: 165 FHLTPTALGI 174

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 69.6 bits (171), Expect = 6e-13
 Identities = 21/52 (40%), Positives = 33/52 (63%)

Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAH 336
           D A I+YTSGSTG PKGV+L+H N+ +  ++ +  + +  +D  L  LP + 
Sbjct: 3   DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSF 54

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 69.9 bits (172), Expect = 9e-13
 Identities = 54/217 (24%), Positives = 83/217 (38%), Gaps = 59/217 (27%)

Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
           D A+   + G+TG PK +  TH++ + + +A ++A  ++P  V+L  LP AH F L   S
Sbjct: 140 DVALFQLSGGTTGLPKLIPRTHNDYLYSARASAEACGLDPGTVYLAVLPAAHNFTL--SS 197

Query: 345 VCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHP--TALTAVPLILDRIYKGVHEKV 402
             LL  +  G                GT     VLH   +   A PLI         EKV
Sbjct: 198 PGLLGALLAG----------------GT----VVLHHPPSPDVAFPLI-------EREKV 230

Query: 403 SRAS---PFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPL 459
           +  +            A     +W +                       +R+I  GGAPL
Sbjct: 231 THTALVPALLNLWLEAA-----EWDQADLS------------------SLRVIQVGGAPL 267

Query: 460 SPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDM 496
           SP+    ++  L   + Q +G+ E     T   L+D 
Sbjct: 268 SPELARRVEERLGCPLQQVFGMAEGLVNYT--RLDDP 302

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 69.1 bits (170), Expect = 2e-12
 Identities = 54/254 (21%), Positives = 91/254 (35%), Gaps = 31/254 (12%)

Query: 92  TMEKVLRYVVTRFSDQRC-LGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQ-VNDEA 149
            + + L+       D +  LG      E   + P+ R    +      +   N   N  A
Sbjct: 20  GILRGLKRTALITPDSKRSLGDV--FEEAAARHPD-RPALLFEDQSISYAELNARANRYA 76

Query: 150 EAF-GKGLRSLGQEPRHNVV-IFAETRAEWMIAAQACFKQNIPVVT--IYATLGEEAIAH 205
                +G+       + +VV +  E R E++ A     K  +  V   +        +AH
Sbjct: 77  HWAAARGVG------KGDVVALLMENRPEYLAAWLGLAK--LGAVVALLNTQQRGAVLAH 128

Query: 206 GINETEVNIVITTHDLLPKF---RNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPF 262
            +N  +   +I   +L+  F   R  L   PR+                +          
Sbjct: 129 SLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYE-DLAAAA----- 182

Query: 263 KQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHI 322
                 G+ + +    S  T KDTA  +YTSG+TG PK  V++H   +  +  F   + +
Sbjct: 183 -----AGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRL 237

Query: 323 EPNDVFLGYLPLAH 336
            P+DV    LPL H
Sbjct: 238 TPDDVLYCCLPLYH 251

Length = 600

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 68.2 bits (167), Expect = 4e-12
 Identities = 50/237 (21%), Positives = 81/237 (34%), Gaps = 17/237 (7%)

Query: 115 ILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETR 174
           +LA + E+ P+  +    V G     ++ +    A A    L + G +    V +    R
Sbjct: 26  MLARQAERYPDRPLL---VFGG-TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNR 81

Query: 175 AEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNIL-KLTP 233
            E++     C       V I   L    + H +  +   +++    LL           P
Sbjct: 82  IEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLP 141

Query: 234 RVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTS 293
             +  +       S        G    P            +    +   P DTA I+YTS
Sbjct: 142 LPAVWLLDAPASVSVP-----AGWSTAPLPP-------LDAPAPAAAVQPGDTAAILYTS 189

Query: 294 GSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCG 350
           G+TG  KGV   H       +  ++ + I  +DV    LPL H   L +    LL G
Sbjct: 190 GTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFFQALLAG 246

Length = 542

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 67.6 bits (166), Expect = 4e-12
 Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLA---HVF 338
            P D A I++TSGSTG PKGV ++H N+ S L    +   +   DVF    P +    VF
Sbjct: 95  DPDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTEGDVFSNQAPFSFDLSVF 154

Query: 339 ELLSESVCLLCG 350
           +L      L  G
Sbjct: 155 DLF---PALASG 163

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 67.6 bits (165), Expect = 6e-12
 Identities = 67/250 (26%), Positives = 105/250 (42%), Gaps = 61/250 (24%)

Query: 249 DTTNFKQG-IEIVPFKQIVKRGSESGSRYEGSPPTPK-DTAIIMYTSGSTGTPKGVVLTH 306
           +  +F    IE   F +++K   +   +    P   + D A IMY+SG+TG  KGVVLTH
Sbjct: 165 ENYDFDSKRIEFPKFYELIKEDFDFVPK----PVIKQDDVAAIMYSSGTTGASKGVVLTH 220

Query: 307 DNMISTLKAF-----SDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTM 361
            N+I+ ++ F     S   +   ++V+L  LP+ H++ L    V LL   ++G ST + M
Sbjct: 221 RNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLL---SLG-STIVVM 276

Query: 362 IDTSSKIKRGTKGDA-SVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYK 420
                  +R    D   V+    +T  P++                P   AL   A    
Sbjct: 277 -------RRFDASDMVKVIDRFKVTHFPVV---------------PPILMALTKKA---- 310

Query: 421 RKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDT-HELIKVCLCEKVIQGY 479
                         K V G+  K L    + +  G APLS     + ++       IQGY
Sbjct: 311 --------------KGVCGEVLKSL----KQVSCGAAPLSGKFIQDFVQTLPHVDFIQGY 352

Query: 480 GLTETTSCAT 489
           G+TE+T+  T
Sbjct: 353 GMTESTAVGT 362

Length = 560

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 58/352 (16%), Positives = 111/352 (31%), Gaps = 101/352 (28%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           ++  ++ EA    K L++ G      V +  +   E ++   AC      +  +   L E
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
               + + + +V +++T             L  +      + D++ +           + 
Sbjct: 61  NERTNQLEDLDVQLLLTD----------SLLEEKDFQADSL-DRIEAAGRYE----TSLS 105

Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV 320
               +                     A +M+TSG+TG PK V  T  N  ++     + +
Sbjct: 106 ASFNM------------------DQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENL 147

Query: 321 HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAI----GYSTPLTMIDTSSKIKRGTKGDA 376
               +D +L  LPL H+  L      L+ G  +     ++  L MI  + ++        
Sbjct: 148 GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFNQLLEMI-ANERV-------- 198

Query: 377 SVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKV 436
                T ++ VP  L+R+                                G     +   
Sbjct: 199 -----THISLVPTQLNRL-----------------------------LDEGGHNENL--- 221

Query: 437 VFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKV--IQGYGLTETTS 486
                        R IL GG+ +      LI+      +     YG+TET S
Sbjct: 222 -------------RKILLGGSAIPA---PLIEEAQQYGLPIYLSYGMTETCS 257

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 66.1 bits (162), Expect = 1e-11
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLA---HVF 338
            P D A ++YTSGSTG PKGV ++H  +++ L + +    +  +D  L    ++    V 
Sbjct: 91  DPDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSMARRPGLGASDRLLAVTTISFDISVL 150

Query: 339 ELLSESVCLLCG 350
           ELL   + LL G
Sbjct: 151 ELL---LPLLSG 159

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 6/82 (7%)

Query: 256 GIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKA 315
           G+  VP    V+  + S  RY    P P   A+I+YTSG+TG PKGVVL+   + + L A
Sbjct: 106 GLPHVP----VRLHARSWHRYPE--PDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDA 159

Query: 316 FSDAVHIEPNDVFLGYLPLAHV 337
            ++A     +DV +  LPL HV
Sbjct: 160 LAEAWQWTADDVLVHGLPLFHV 181

Length = 471

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 64.5 bits (158), Expect = 3e-11
 Identities = 46/207 (22%), Positives = 79/207 (38%), Gaps = 62/207 (29%)

Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
             A I++TSGSTG PK VV T  N +++ +  ++ + + P+D +L  LPL HV  L   +
Sbjct: 78  RPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLGLTPDDNWLLSLPLFHVSGL---A 134

Query: 345 V---CLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEK 401
           +    LL G A+       ++      +   +   +    T ++ VP  L R+ + +  +
Sbjct: 135 IVMRSLLAGGAL-------VLPDKFDAEAIAEALEN-HGVTHISLVPTQLQRLLESLGAR 186

Query: 402 VSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSP 461
              +   +  L                                LGG         AP+ P
Sbjct: 187 WLSS--LRAVL--------------------------------LGG---------APIPP 203

Query: 462 DTHELIKVCLCEK--VIQGYGLTETTS 486
               L++        +   YG+TET S
Sbjct: 204 ---SLLEQARQRGIPLYPTYGMTETAS 227

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 64.8 bits (158), Expect = 5e-11
 Identities = 53/237 (22%), Positives = 95/237 (40%), Gaps = 27/237 (11%)

Query: 137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYA 196
           Y WR   Q+ D  +   +GL +LG +P   V I+A   AEW++   A  +    +V I  
Sbjct: 46  YTWR---QLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINP 102

Query: 197 TLGEEAIAHGINETEVNIVITTHDLLPKFRN------ILKLTPRVSTLIYMEDQLTSTDT 250
                 + + + ++ V  VI        F+       + +L P ++        L     
Sbjct: 103 AYRASELEYALGQSGVRWVIC----ADAFKTSDYHAMLQELLPGLAEGQPGA--LACERL 156

Query: 251 TNFKQGIEIVP--------FKQIVKRGSE-SGSRYEGSPP--TPKDTAIIMYTSGSTGTP 299
              +  + + P        + ++  RG   S              D   I YTSG+TG P
Sbjct: 157 PELRGVVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFP 216

Query: 300 KGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFEL-LSESVCLLCGVAIGY 355
           KG  L+H N+++     ++++ +  +D     +PL H F + L+   C+  G  + Y
Sbjct: 217 KGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVY 273

Length = 558

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 64.4 bits (157), Expect = 7e-11
 Identities = 51/221 (23%), Positives = 91/221 (41%), Gaps = 34/221 (15%)

Query: 130 KKYVMGDYEWR-SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQN 188
           K  V+ ++    +++ ++  A      L + G EP   V        E+ I   AC K  
Sbjct: 39  KIAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVG 98

Query: 189 IPVVTIYATLGEEAIAHGINETEVNIVI-------TTHDLLPKFRNILKLTPRVSTL--I 239
              V +  +  E  +   +N+ +  +         T    L     IL L  ++  L  I
Sbjct: 99  AVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDL-----ILPLQNQLPQLQQI 153

Query: 240 YMEDQL---TSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDT-AIIMYTSGS 295
              D+L   TS+ +             QI+            +  T  D  A +++TSG+
Sbjct: 154 VGVDKLAPATSSLS-----------LSQII----ADYEPLTTAITTHGDELAAVLFTSGT 198

Query: 296 TGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAH 336
            G PKGV+LTH+N++++ +A+   +++   DVF+   PL H
Sbjct: 199 EGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGH 239

Length = 547

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score = 63.3 bits (155), Expect = 8e-11
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
           D A+I+YTSG+TG PKGV+LTH N+++        V + P DV+L   PL H     +  
Sbjct: 2   DPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHA----AGG 57

Query: 345 VCLLCGVAIG 354
           + LL  +A G
Sbjct: 58  LFLLPALAAG 67

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 63.5 bits (155), Expect = 8e-11
 Identities = 24/53 (45%), Positives = 34/53 (64%)

Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHV 337
           D A+I YTSG+TG PKG + TH  +++T  A +    + P+ V L +LPL HV
Sbjct: 85  DVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLFHV 137

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 63.0 bits (154), Expect = 1e-10
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 3/63 (4%)

Query: 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLA---HVF 338
           +P D A ++YTSGSTG PKGVV+TH N+ + L+A    + I P D  L +  +A    + 
Sbjct: 97  SPDDPAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPGDRVLQFASIAFDVSIL 156

Query: 339 ELL 341
           E+ 
Sbjct: 157 EIF 159

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 62.9 bits (153), Expect = 2e-10
 Identities = 41/188 (21%), Positives = 78/188 (41%), Gaps = 15/188 (7%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           S+ ++  +    G  LR LG +    V++      ++ IA     +  I  V +   L  
Sbjct: 32  SYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTA 91

Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
           +  A+ + ++   +V  + +LLP  +  L  +P +   + +                   
Sbjct: 92  DDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQ---------- 141

Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS-DA 319
              +++   SE     + +     D A  +Y+SGSTG PKGVV TH N   T + ++ + 
Sbjct: 142 -LAELLATESEQF---KPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNT 197

Query: 320 VHIEPNDV 327
           + I  +DV
Sbjct: 198 LGIREDDV 205

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 62.6 bits (153), Expect = 2e-10
 Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 17/180 (9%)

Query: 133 VMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVV 192
           V GD    ++ ++ + A      L + G  P  +V I+A  R E++ A    FK     V
Sbjct: 23  VCGDRRL-TYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPV 81

Query: 193 TI---YATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD 249
            +   Y    E+ + + +++++   ++   +  P+   +L   P++ TL+ +ED    + 
Sbjct: 82  NVNYRYV---EDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVED---GSG 135

Query: 250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNM 309
                     V ++  +  GS      E SP    D   ++YT G+TG PKGV+   +++
Sbjct: 136 NDLLPGA---VDYEDALAAGSPERDFGERSP----DDLYLLYTGGTTGMPKGVMWRQEDI 188

Length = 533

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 62.6 bits (153), Expect = 2e-10
 Identities = 47/209 (22%), Positives = 78/209 (37%), Gaps = 21/209 (10%)

Query: 133 VMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVV 192
           V GD  W ++ +++         L  LG +    V         + +   AC +     V
Sbjct: 31  VFGDRSW-TYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHV 89

Query: 193 TIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTN 252
            +   L  E +A+ ++ +     +    L P     L L P  + +  +   L   +   
Sbjct: 90  PVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLI--LSLVLGGRE--- 144

Query: 253 FKQGIEIVPFKQIVKRGSESGSRYEGSP-PTPKDTAIIMYTSGSTGTPKGVVLTHDNMI- 310
                  + F       +E+GS  E        D A I+YTSG+   PKG +LTH  +I 
Sbjct: 145 --APGGWLDFADW----AEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIA 198

Query: 311 ---STLKAFSDAVHIEPNDVFLGYLPLAH 336
              S + A      +  +D+ L  LPL H
Sbjct: 199 EYVSCIVAGD----MSADDIPLHALPLYH 223

Length = 523

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 62.6 bits (153), Expect = 2e-10
 Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 62/241 (25%)

Query: 272 SGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGY 331
           + + +  +   P D A I++TSGSTGTPKGVV TH    + ++A  +   IEP ++ L  
Sbjct: 162 AAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDL-- 219

Query: 332 LPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLIL 391
                 F L +     L G A+G ++ +  +D +               P   T  P   
Sbjct: 220 ----PTFPLFA-----LFGPALGMTSVIPDMDPT--------------RPA--TVDP--- 251

Query: 392 DRIYKGVH-EKVSR--ASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVV-FGQTKKLLGG 447
            +++  +    V+    SP                        L++++  +G+   +   
Sbjct: 252 AKLFAAIERYGVTNLFGSP-----------------------ALLERLGRYGEANGIKLP 288

Query: 448 RVRLILSGGAPLSPDTHELIKVCLCE--KVIQGYGLTET---TSCATVMHLNDMGNINSN 502
            +R ++S GAP+     E  +  L    +++  YG TE    +S  +   L        N
Sbjct: 289 SLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDN 348

Query: 503 G 503
           G
Sbjct: 349 G 349

Length = 552

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 62.3 bits (152), Expect = 4e-10
 Identities = 43/112 (38%), Positives = 58/112 (51%), Gaps = 13/112 (11%)

Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLS 342
           P D A+I++TSGS GTPKGVVL+H N+++     +  +   P D     LP+ H F L  
Sbjct: 792 PDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTG 851

Query: 343 ESVC-LLCGVAIG-YSTPL------TMI-DTSSKIKRGT----KGDASVLHP 381
             V  LL GV +  Y +PL       +I DT++ I  GT     G A   HP
Sbjct: 852 GLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAHP 903

Length = 1140

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 61.5 bits (150), Expect = 5e-10
 Identities = 52/212 (24%), Positives = 86/212 (40%), Gaps = 24/212 (11%)

Query: 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVV-- 192
           G     ++             L SLG +P   V   A      +    A     +P +  
Sbjct: 21  GSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFA-----VPGMGA 75

Query: 193 ---TIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLI-YMEDQLTST 248
              T+   L  E IA+ IN  E  ++    D LP    I    P V  ++ Y +  +  T
Sbjct: 76  VLHTLNPRLSPEQIAYIINHAEDKVIFVDDDFLPLLEAIAPRLPTVKAVVVYDDADMPET 135

Query: 249 DTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIM-YTSGSTGTPKGVVLTH- 306
              N      +  ++++++  S         P   ++TA  + YTSG+TG PKGVV +H 
Sbjct: 136 SLPN------VYAYEELLEEESP----EYEWPELDENTAAGLCYTSGTTGNPKGVVYSHR 185

Query: 307 DNMISTLK-AFSDAVHIEPNDVFLGYLPLAHV 337
             ++ TL  A  D++ +  +D  L  +P+ HV
Sbjct: 186 SLVLHTLASALPDSLGLSESDTVLPVVPMFHV 217

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 13/118 (11%)

Query: 232 TPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRY-------EGSPPTP- 283
           TPR    ++ ED L        K  +   PF        E G R           P  P 
Sbjct: 88  TPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEKGIRVLTVADLLAADPIDPV 147

Query: 284 ----KDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEP-NDVFLGYLPLAH 336
                D A++  TSGSTG+PK V +TH N+ +  +A   A   +   DV + +LPL H
Sbjct: 148 ETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFH 205

Length = 545

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 60.4 bits (147), Expect = 6e-10
 Identities = 49/223 (21%), Positives = 76/223 (34%), Gaps = 45/223 (20%)

Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLS 342
           P D A   +T G+TG PK    +H N ++     +    + P DV L  LPL HV   + 
Sbjct: 1   PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVGGAIV 60

Query: 343 ESV-CLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEK 401
             +  L  G  +   TP    + +  +             T L+AVP +L  + +     
Sbjct: 61  TGLAPLARGATVVLPTPSGFRNPA--VVANFWKIVERYRVTLLSAVPTVLAALLQ----- 113

Query: 402 VSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSP 461
                                        PL D  +           +R  L+G APL  
Sbjct: 114 ----------------------------VPLGDADI---------SSLRYALTGAAPLPV 136

Query: 462 DTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNGL 504
           +     +      V++GYG+TE T  + +          S GL
Sbjct: 137 EVARRFEAVTGVPVVEGYGMTEGTGVSAINPRGGPRRPGSVGL 179

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 61.0 bits (149), Expect = 7e-10
 Identities = 24/70 (34%), Positives = 36/70 (51%)

Query: 268 RGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDV 327
             + +   +E  P    D A I+YTSG+TG  KG +L+H N++S      D     P+DV
Sbjct: 140 AAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDV 199

Query: 328 FLGYLPLAHV 337
            +  LP+ H 
Sbjct: 200 LIHALPIFHT 209

Length = 504

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 60.8 bits (148), Expect = 9e-10
 Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 12/93 (12%)

Query: 277 EGSPPT----PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA----VHIEPNDVF 328
           E   P     P D   + Y+SG+TG PKGV+LTH  +++++    D     ++   +DV 
Sbjct: 168 ENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVI 227

Query: 329 LGYLPLAHVFELLSESVCLLCGVAIGYSTPLTM 361
           L  LP+ H++ L S    LLCG+ +G +  L M
Sbjct: 228 LCVLPMFHIYSLNS---VLLCGLRVG-AAILIM 256

Length = 537

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 52/218 (23%), Positives = 75/218 (34%), Gaps = 53/218 (24%)

Query: 278 GSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIS---TLKAFSDAVHIEPNDVFLGYLPL 334
           G P  P D A   +T G+TG PK    TH N ++               P D     LPL
Sbjct: 207 GRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGL---GPGDTVFCGLPL 263

Query: 335 AHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAV-PLILDR 393
            HV  LL   V  L         PL          RG    A V+  T      P ++  
Sbjct: 264 FHVNALL---VTGL--------APLA---------RG----AHVVLATPQGYRGPGVIAN 299

Query: 394 IYKGV-HEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLI 452
            +K V   +++  S       A              + P+    +           +R  
Sbjct: 300 FWKIVERYRINFLSGVPTVYAALL------------QVPVDGHDI---------SSLRYA 338

Query: 453 LSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATV 490
           L G APL  +     +     ++++GYGLTE T  ++V
Sbjct: 339 LCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSV 376

Length = 632

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 59.5 bits (145), Expect = 2e-09
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 280 PPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAH--- 336
              P D A +++TSGSTG PKGV++TH   ++T+   +    + P D  L    L     
Sbjct: 122 RVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDVNRRFGVGPADRVLALSALHFDLS 181

Query: 337 ---VFELLS 342
              +F  LS
Sbjct: 182 VYDIFGALS 190

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 58.8 bits (143), Expect = 3e-09
 Identities = 42/192 (21%), Positives = 67/192 (34%), Gaps = 57/192 (29%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           +++++  E      GL +LG      V I+     E ++A  A  K     V I++  G 
Sbjct: 9   TYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFGP 68

Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
           +A+A  + + E  ++I                             T+             
Sbjct: 69  DAVATRLQDAEAKVLI-----------------------------TADGFL--------- 90

Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV 320
                 +RG               D A+I+YTSG+TG PKG V TH      +KA  D  
Sbjct: 91  ------RRGKRV--------DLKDDPAMIIYTSGTTGKPKGTVHTHAGFP--VKAAKDIG 134

Query: 321 H---IEPNDVFL 329
               ++P D  L
Sbjct: 135 FCFDLKPGDRLL 146

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 59.2 bits (143), Expect = 3e-09
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 277 EGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAH 336
            G  P+P D   ++YTSG+TG PKGV+ T + + S +  +++ + +   DV L   P+AH
Sbjct: 188 AGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAH 247

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 58.3 bits (141), Expect = 5e-09
 Identities = 53/221 (23%), Positives = 80/221 (36%), Gaps = 62/221 (28%)

Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLS 342
           P D  +I +TSG+TG PKGV ++H  +I    A    V    +DV+L   PL H+     
Sbjct: 171 PDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHI----- 225

Query: 343 ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVL-------HPTALTAVPLILDRIY 395
                  G   G S+ L M+   +      K DA          + T++  VP ++  + 
Sbjct: 226 -------G---GLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLI 275

Query: 396 KGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSG 455
               + ++                        F                    VR IL+G
Sbjct: 276 SLTRKSMTWK---------------------VFPS------------------VRKILNG 296

Query: 456 GAPLSPD-THELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
           G  LS     +  K+    K+   YG+TE  S  T M L+D
Sbjct: 297 GGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHD 337

Length = 563

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 58.1 bits (141), Expect = 5e-09
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 12/102 (11%)

Query: 260 VPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST---LKAF 316
           V F   +  G+     ++     P D A + YT G+TG  KG  L H N+++    ++A+
Sbjct: 182 VRFNDALAEGA--RQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAW 239

Query: 317 SDAVHIEPNDV----FLGYLPLAHVFELLSESVCLLCGVAIG 354
                 +        F+  LPL H+F L   +VC L G+  G
Sbjct: 240 LQPAFEKKPRPDQLNFVCALPLYHIFAL---TVCGLLGMRTG 278

Length = 557

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 57.5 bits (139), Expect = 9e-09
 Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 40/205 (19%)

Query: 207 INETEVNIVITTHDLLPKFRNILKLTPRV-STLIYMED---QLTSTDTTNFKQGIEI--- 259
            N   V  V+T+  L+               +LIYME+   +L+  +    K  I I   
Sbjct: 110 ANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKELSFWE----KCRIGIYMS 165

Query: 260 VPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA 319
           +PF+ +++    S          P+D A+I++TSG+   PKGV LTH N+++  +A    
Sbjct: 166 IPFEWLMRWFGVSDK-------DPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKF 218

Query: 320 VHIEPNDVFLGYLPLAHVFELLSESVC-LLCGVAIGYS-TPLT------MIDTSSKIKRG 371
              + +DV + +LP  H +   S ++  LL GV + ++  PL       MID +      
Sbjct: 219 FSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEA------ 272

Query: 372 TKGDASVLHPTALTAVPLILDRIYK 396
                     T L + P+  D I K
Sbjct: 273 --------KVTFLGSTPVFFDYILK 289

Length = 539

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 57.7 bits (139), Expect = 1e-08
 Identities = 44/201 (21%), Positives = 83/201 (41%), Gaps = 39/201 (19%)

Query: 141  SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQN---IPVVTIYAT 197
            S+ +++  A      LR+ G  P   V I AE   E ++A  A  K     +P+   Y  
Sbjct: 2030 SYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPA 2089

Query: 198  LGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGI 257
               E +A+ + ++   +++T   LL                    ++L          G+
Sbjct: 2090 ---ERLAYMLEDSGAALLLTQRHLL--------------------ERLPLP------AGV 2120

Query: 258  EIVPFKQIVKRGSESGSRYEGSPPT---PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLK 314
              +P      R +E     + +P      ++ A ++YTSGSTG PKGV ++H  +++  +
Sbjct: 2121 ARLPLD----RDAEWADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQ 2176

Query: 315  AFSDAVHIEPNDVFLGYLPLA 335
            A  +   + P D  L ++  +
Sbjct: 2177 AAGERYELSPADCELQFMSFS 2197

Length = 5163

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 57/223 (25%), Positives = 87/223 (39%), Gaps = 31/223 (13%)

Query: 139 WRSFNQVNDEAEAFGKGL--RSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYA 196
           WR   +++D   A    L  R +G   R  V+I    R E++ +  A        V +  
Sbjct: 45  WR---ELDDRVAALAGALSRRGVGFGDR--VLILMLNRTEFVESVLAANMLGAIAVPVNF 99

Query: 197 TLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQG 256
            L    IA  +++   ++V+T   L P    +  + P +ST++       S+D +     
Sbjct: 100 RLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGG---SSDDSVL--- 153

Query: 257 IEIVPFKQIVKRGSESGSRYEGSPPTPKDT-----AIIMYTSGSTGTPKGVVLTHDNMIS 311
                       G E      G    P D      A+IMYTSG+TG PKG VLTH N+  
Sbjct: 154 ------------GYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTG 201

Query: 312 TLKAFSDAVHIE-PNDVFLGYLPLAHVFELLSESVCLLCGVAI 353
                      +  +DV    +PL H+  + S    LL G   
Sbjct: 202 QAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPT 244

Length = 542

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 48/229 (20%), Positives = 78/229 (34%), Gaps = 58/229 (25%)

Query: 138 EWR--SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTI- 194
           EWR  ++ +   +  A  + L  LG      ++I +    E  + A A     +PV  + 
Sbjct: 22  EWRRVTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVS 81

Query: 195 --YATLGEEAIAHGINETEVNIVITTHDLLPKFRNIL-KLTPRVSTLIYMEDQLTSTDTT 251
             Y+ L                   + D   K R+I   LTP     ++ ED        
Sbjct: 82  PAYSLL-------------------SKDFA-KLRHIFDLLTPG---AVFAED------GA 112

Query: 252 NFKQGIEIVPFK---QIVKRGSESGSRY--------EGSPP--------TPKDTAIIMYT 292
            F + +  +       +  RG+  G             +           P   A  ++T
Sbjct: 113 AFARALAALGLAGVPVVAVRGAPGGPAIAFAALLATPPTAAVDAAFAAVGPDTVAKYLFT 172

Query: 293 SGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPND---VFLGYLPLAHVF 338
           SGSTG PK V+ TH  M+   +A          +   V + +LP  H F
Sbjct: 173 SGSTGLPKAVINTH-RMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTF 220

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 280 PPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD-AVHIEPNDVFLGYLPLAHVF 338
           PP     A + YT G+TG PKG   T  +M+ T  A    AV    + VFL +LP    F
Sbjct: 205 PPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPE---F 261

Query: 339 ELLSESVCLL 348
            +  E+  LL
Sbjct: 262 WIAGENFGLL 271

Length = 567

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 51/203 (25%), Positives = 73/203 (35%), Gaps = 55/203 (27%)

Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
           D A I++TSGSTG PKGVV TH    + + A      I   D  L   P    F L    
Sbjct: 86  DPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIREGDRDLAAFPP---FALF--- 139

Query: 345 VCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSR 404
                G A+G +T +  +D ++              P AL                K+++
Sbjct: 140 -----GPALGVTTVIPAMDPTA--------------PAALDP-------------AKLAQ 167

Query: 405 ASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVV--FGQTKKLLGGRVRLILSGGAPLSPD 462
           A     A   F               P + K V  + +   +    +R +LS GAP+ PD
Sbjct: 168 AIREIGASCVFG-------------SPALLKNVARYCEENGIQLPSLRRVLSAGAPVPPD 214

Query: 463 THELIKVCLCE--KVIQGYGLTE 483
                   L    ++   YG TE
Sbjct: 215 LLRRFVANLMPEAEIHTPYGATE 237

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 20/56 (35%), Positives = 36/56 (64%)

Query: 281 PTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAH 336
           P P D   ++YTSG+TG PKGV+ T + +++ +  +++ + +  +DV L   P+AH
Sbjct: 194 PGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAH 249

Length = 547

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 52/192 (27%), Positives = 78/192 (40%), Gaps = 26/192 (13%)

Query: 159 LGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITT 218
           LG  P H +  F   +A               VV +    GE A++H ++++   ++IT+
Sbjct: 78  LGNTPDHPINFFGALKA------------GARVVHLSPLDGERALSHKLSDSGARLLITS 125

Query: 219 H--DLLPKFRNILKLTPRVSTLIYMEDQ---LTSTDTTNFKQGIEIVPFKQIVKRGSESG 273
               LLP     L+    +  LI  ED       T          IV +   VK  +   
Sbjct: 126 DLAALLPMALKFLE-KGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVKGAAAPA 184

Query: 274 SRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS---DAVHIEPNDV--F 328
              E    TP D A++ YT G+TG PKG +LTH N+ S +  +            DV   
Sbjct: 185 ---EWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERV 241

Query: 329 LGYLPLAHVFEL 340
           +  LPL H++ L
Sbjct: 242 ICVLPLFHIYAL 253

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 54.2 bits (131), Expect = 1e-07
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 279 SPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS-DAVHIEPNDVFLGYLPLAH 336
             PTP D A + Y+SGST  P+GV++TH  +++ L+A S D + + P D  + +LP  H
Sbjct: 171 PRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYH 229

Length = 579

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSE- 343
           D A  +YTSG+TG PK  +++H   +     F     ++P+DV    LPL H   L    
Sbjct: 82  DPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYHSNALTVGW 141

Query: 344 SVCLLCGVAI 353
           S  L  G ++
Sbjct: 142 SSALAAGASL 151

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 48/233 (20%), Positives = 82/233 (35%), Gaps = 59/233 (25%)

Query: 135 GDYEWR--SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVV 192
            D  WR  ++ +  +   A  + L   G      ++I +    E  + A A     +P  
Sbjct: 63  ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYA 122

Query: 193 TI---YATLGEEAIAHGINETEVNIVITTHDLLPKFRNILK-LTPRVSTLIYMEDQLTST 248
            +   Y+ +                     D   K R++L+ LTP    L++ +D     
Sbjct: 123 PVSPAYSLVS-------------------QDFG-KLRHVLELLTP---GLVFADD----- 154

Query: 249 DTTNFKQGIEIVPFKQ---IVKRGSESGSRY------EGSPP-----------TPKDTAI 288
               F + +  V       +  RG+  G           +PP            P   A 
Sbjct: 155 -GAAFARALAAVVPADVEVVAVRGAVPGRAATPFAALLATPPTAAVDAAHAAVGPDTIAK 213

Query: 289 IMYTSGSTGTPKGVVLTHDNMISTLKAFSDA---VHIEPNDVFLGYLPLAHVF 338
            ++TSGSTG PK V+ TH  + +  +  +     +  EP  V + +LP  H F
Sbjct: 214 FLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEP-PVLVDWLPWNHTF 265

Length = 614

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 26/92 (28%), Positives = 43/92 (46%)

Query: 271 ESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLG 330
           E G+ +          A + YTSGST  P GV +TH N+ + +    DA+  +  D  + 
Sbjct: 167 EVGATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVS 226

Query: 331 YLPLAHVFELLSESVCLLCGVAIGYSTPLTMI 362
           +LP  H   L++  +  L G  I + +P   +
Sbjct: 227 WLPFFHDMGLITVLLPALLGHYITFMSPAAFV 258

Length = 631

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 34/148 (22%), Positives = 56/148 (37%), Gaps = 13/148 (8%)

Query: 192 VTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT 251
           V +   L  + IA  +N +E  ++    + L      L L      +      ++     
Sbjct: 82  VPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALALLSTKEIIDTEIIVISPAAED 141

Query: 252 NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAI-IMYTSGSTGTPKGVVLTHDNMI 310
                 E   ++ ++  G          PP  +   I + YTSG+TG PKGVV TH    
Sbjct: 142 -----SEEGDYEDLLAGGDPD---PLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRG-- 191

Query: 311 STLKAFSDAVHIE--PNDVFLGYLPLAH 336
           + L A  + +        V+L  LP+ H
Sbjct: 192 AYLNALGNVIEWGMPDRPVYLWTLPMFH 219

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 53/209 (25%), Positives = 78/209 (37%), Gaps = 52/209 (24%)

Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
           D A+IM+T G+TG PK V  TH N+ S+++A      + P D  +  +PL H   L++  
Sbjct: 177 DDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIA-- 234

Query: 345 VCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLI----LDRIYKGVHE 400
             LL  +A G +  L      S        D   +  T  TAVP I    L+R       
Sbjct: 235 -ALLATLASGGAVLLPARGRFS--AHTFWDDIKAVGATWYTAVPTIHQILLER------- 284

Query: 401 KVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLS 460
             +   P  R                     L                 R I S  APL+
Sbjct: 285 --AATEPSGRK-----------------PAAL-----------------RFIRSCSAPLT 308

Query: 461 PDTHELIKVCLCEKVIQGYGLTETTSCAT 489
            +T + ++      V+  +G+TE T   T
Sbjct: 309 AETAQALQTEFAAPVVCAFGMTEATHQVT 337

Length = 534

>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 88/408 (21%), Positives = 146/408 (35%), Gaps = 66/408 (16%)

Query: 89  GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDE 148
           GV ++ ++    VTR S  RCLG                  +    G+ EW ++  V+  
Sbjct: 425 GVRSLGEMWERSVTRHSTFRCLG------------------QTSESGESEWLTYGTVDAR 466

Query: 149 AEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGIN 208
           A   G GL +LG  P   + +  E     +I   AC       + +        +   I+
Sbjct: 467 ARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLPLVGK--GSTMRTLID 524

Query: 209 ETEVNIVITTHDLLPKFRNILK--LTPR---VSTLIYMEDQLTSTDTTNFKQ-GIEIVPF 262
           E ++ +V          RN +   LT R   + T++Y        D    +   I ++P+
Sbjct: 525 EHKIKVVFAD-------RNSVAAILTCRSRKLETVVYTHSFYDEDDHAVARDLNITLIPY 577

Query: 263 KQIVKRGSESGSRYEGSPPTP--KDTAIIMYTSGSTGTPKG-----VVLTHDNM---IST 312
           + + ++G     R    P         +  Y   +T +  G     V +TH ++   IST
Sbjct: 578 EFVEQKG-----RLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDIST 632

Query: 313 LKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGT 372
           L             + + + P A +F      V +L   A G +  +  +D +   +   
Sbjct: 633 LVMTGVLPSSFKKHLMVHFTPFAMLF----NRVFVLGLFAHGSA--VATVDAAHLQRAFV 686

Query: 373 KGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFR-CP 431
           K       PT L A P +       +     R S     LF  AF+ + +      R   
Sbjct: 687 K-----FQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIHRRDSS 741

Query: 432 LIDKVVFGQTKKLLGGRVRLIL--SGGAPLSPDTHELIKVC----LCE 473
           L+  + F  T++LLGG V  I+        S    E I VC    L E
Sbjct: 742 LLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLEHISVCYVPCLRE 789

Length = 1452

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 278  GSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLA 335
                 P++ A ++YTSGSTG PKG    H  +++ L A  +A  +   DV L +   A
Sbjct: 1712 AVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFA 1769

Length = 3956

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 13/149 (8%)

Query: 191 VVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNIL--KLTPRVSTLIYMEDQLTST 248
           +V I A L  E  A  +  ++ ++++T+    P +R I     TP     +         
Sbjct: 89  MVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPADD 148

Query: 249 DTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDN 308
             ++F Q            +  +  +     P +  DTA I++TSG+T  PKGVV+TH N
Sbjct: 149 GVSSFTQ-----------LKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYN 197

Query: 309 MISTLKAFSDAVHIEPNDVFLGYLPLAHV 337
           +       +    +  +DV+L  +P  H+
Sbjct: 198 LRFAGYYSAWQCALRDDDVYLTVMPAFHI 226

Length = 517

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS-DAVHIEPNDVFLGYLPLAHVFEL 340
             D A  +YTSG+TG PKGV+  H + ++  +AF+ + + ++P D       L   + L
Sbjct: 90  ADDIAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGLQPGDRIFSSSKLFFAYGL 148

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 52.5 bits (127), Expect = 3e-07
 Identities = 53/206 (25%), Positives = 84/206 (40%), Gaps = 33/206 (16%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           ++ ++  E   F   L+SLG +    V I+     E  IA  AC +       ++A    
Sbjct: 80  TYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLACARIGAIHSVVFAGFSA 139

Query: 201 EAIAHGINETEVNIVITTH---------DLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT 251
           EA+A  IN+ +  ++IT            L       L+  P V  +I ++    +    
Sbjct: 140 EALADRINDAKSKLLITADGGYRGGKVIPLKEIVDEALEKCPSVEKVIVVK---RTGGEV 196

Query: 252 NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTP---KDTAIIMYTSGSTGTPKGVV----- 303
              +G + V +  ++ + S          P P   +D   I+YTSGSTG PKGVV     
Sbjct: 197 PMVEGRD-VWWHDLMAKASPY------CEPEPMDAEDPLFILYTSGSTGKPKGVVHTTGG 249

Query: 304 -LTHDNMISTLKAFSDAVHIEPNDVF 328
            L +     T K   D   I P+DV+
Sbjct: 250 YLVYAAT--TFKYVFD---IHPDDVY 270

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 11/147 (7%)

Query: 193 TIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTN 252
           T+   L  E IA  IN  E  +VIT    +P    I    P V   + + D      TT 
Sbjct: 93  TVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTT- 151

Query: 253 FKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIM-YTSGSTGTPKGVVLTH-DNMI 310
            K     V +++ +   ++    ++      ++TA  M YTSG+TG PKGV+ +H  N++
Sbjct: 152 LKNA---VAYEEWIA-EADGDFAWKT---FDENTAAGMCYTSGTTGDPKGVLYSHRSNVL 204

Query: 311 STLKAFS-DAVHIEPNDVFLGYLPLAH 336
             L A + DA+     D  L  +PL H
Sbjct: 205 HALMANNGDALGTSAADTMLPVVPLFH 231

Length = 542

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 52.0 bits (125), Expect = 5e-07
 Identities = 38/205 (18%), Positives = 72/205 (35%), Gaps = 15/205 (7%)

Query: 141 SFNQVNDEAEAFGKGLRS-LGQEPRHNVVIF--AETRAEWMIAAQACFKQNIPVVTIYAT 197
           ++ +V+  +    + L +  G +P   V +    E    W+    A  K   P   +   
Sbjct: 5   TYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLA--KLGCPTAFLNTN 62

Query: 198 LGEEAIAHGINETEVNIVITTHDLLPKFRNIL-KLTPRVSTLIYMEDQLTSTDTTNFKQG 256
           +   ++ H        +++   +LL     IL  L      + Y+          +    
Sbjct: 63  IRSGSLLHCFRCCGARVLVADPELLEAVEEILPALRAMGVRVFYLSHTSPPEGVISLLAK 122

Query: 257 IEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAF 316
           ++            E       S  + + TA+ +YTSG+TG PK   ++H  ++      
Sbjct: 123 VDAAS--------DEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLRVLQCSGML 174

Query: 317 SDAVHIEPNDVFLGYLPLAHVFELL 341
           S    +  +DV    LPL H    L
Sbjct: 175 S-LCGVTADDVVYTTLPLYHSSGAL 198

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 51.7 bits (124), Expect = 6e-07
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 12/99 (12%)

Query: 260 VPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMI--------- 310
           VPFKQ +++G   G   +  P    D A++ YT G+TG  KG +LTH N++         
Sbjct: 185 VPFKQALRQGR--GLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRAC 242

Query: 311 -STLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLL 348
            S L      +  E  +V +  LPL H++   +  +C++
Sbjct: 243 LSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMM 281

Length = 562

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 51.9 bits (124), Expect = 7e-07
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 32/198 (16%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
            + ++N  A      L   G  P   V +  E   E ++A  A  K     V +      
Sbjct: 538 DYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPA 597

Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
           E +A+ + ++ V ++++   L  K                               G++++
Sbjct: 598 ERLAYMLEDSGVQLLLSQSHLGRK--------------------------LPLAAGVQVL 631

Query: 261 PFKQIVKRGSESGSRYEGSPPT---PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS 317
              +     +      E +P T   P++ A ++YTSGSTG PKG    H  + + L    
Sbjct: 632 DLDRP---AAWLEGYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQ 688

Query: 318 DAVHIEPNDVFLGYLPLA 335
            A  +   D  L   P +
Sbjct: 689 QAYGLGVGDTVLQKTPFS 706

Length = 5163

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 51.6 bits (123), Expect = 7e-07
 Identities = 50/214 (23%), Positives = 86/214 (40%), Gaps = 18/214 (8%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           +F+  +D+ + F   L+ LG E    V I      + +I           VV       E
Sbjct: 51  TFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTE 110

Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLT--------------PRVSTLIYMEDQLT 246
             + + ++++   +++    + P+  N+   T              P    L+Y   Q  
Sbjct: 111 RELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKK 170

Query: 247 STDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTH 306
            ++        E +     V++   +G      P    D A++ YT G+TG PKGV+LTH
Sbjct: 171 QSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPEN--DLALLQYTGGTTGFPKGVMLTH 228

Query: 307 DNMIS-TLKAFSDAVH-IEPNDVFLGYLPLAHVF 338
            N++S TL       +  E  +V LG LP  HV+
Sbjct: 229 KNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVY 262

Length = 563

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 51.6 bits (124), Expect = 8e-07
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 279 SPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFL 329
               P  TA I++TSGSTG PKGV++    +++ L    +   +  +DV L
Sbjct: 593 QLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVL 643

Length = 1296

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 51.4 bits (123), Expect = 8e-07
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHI-----EPNDVFLGYLPLAHV 337
           P D A + YT G+TG  KG +LTH N+++ ++     +       E  +V +  LPL H+
Sbjct: 207 PDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHI 266

Query: 338 FELLSESVCLL 348
           F L +  +  +
Sbjct: 267 FALTANGLVFM 277

Length = 560

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 50.9 bits (122), Expect = 9e-07
 Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 39/157 (24%)

Query: 196 ATLGEEAIAHGINETEVNIVITTH--DLLPKFRNIL---------KLTPRVSTLIYMEDQ 244
           A L E+ +      T V  VI T   D+LP  + +L         K+ P           
Sbjct: 133 AHLAEKVLPK----TGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHL------- 181

Query: 245 LTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVL 304
                        + V F   + +G+  G     + P   D A++ YT G+TG  KG +L
Sbjct: 182 ------------PQAVKFNDALAKGA--GQPVTEANPQADDVAVLQYTGGTTGVAKGAML 227

Query: 305 THDNMISTL---KAFSDAVHIEPNDVFLGYLPLAHVF 338
           TH N+++ +   +A   +   E  ++ +  LPL H++
Sbjct: 228 THRNLVANMLQCRALMGSNLNEGCEILIAPLPLYHIY 264

Length = 562

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 51.7 bits (124), Expect = 9e-07
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMIST--LKAFSDAVHIEPNDVFLGYLPLAH 336
           P D A + YTSGST  PKGV ++H N+++   L      + + P+DV + +LPL H
Sbjct: 165 PDDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYH 220

Length = 4334

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 53/216 (24%), Positives = 82/216 (37%), Gaps = 79/216 (36%)

Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVH--IEPNDVFLGYLPLAHV--FEL 340
           + A IMYTSG+TG PKGV+ T+ N   +  A   A++  +  +D +L  +P+ H+    +
Sbjct: 142 EVATIMYTSGTTGKPKGVIQTYGNHWWS--AVGSALNLGLTEDDCWLAAVPIFHISGLSI 199

Query: 341 LSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHP-------TALTAVPLILDR 393
           L  SV         Y   + +++         K DA  ++        T ++ V  +L R
Sbjct: 200 LMRSVI--------YGMRVVLVE---------KFDAEKINKLLQTGGVTIISVVSTMLQR 242

Query: 394 IYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLIL 453
           + + + E    +S                     FRC                     +L
Sbjct: 243 LLERLGEGTYPSS---------------------FRC---------------------ML 260

Query: 454 SGGAPLSPDTHELIKVCLCEK---VIQGYGLTETTS 486
            GG P      E  K    EK   V Q YG+TET S
Sbjct: 261 LGGGPAPKPLLEQCK----EKGIPVYQSYGMTETAS 292

Length = 483

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV-HIEPNDVFLGYLPLAHVFEL 340
           D A+I +TSG+TG PKG +  H ++++   AF   V    P+DVF+G  PLA  F L
Sbjct: 148 DVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTPDDVFIGSPPLAFTFGL 204

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHI--EPNDVF 328
             D AI++YTSG+TG PKG +  H  ++  L        +   P DVF
Sbjct: 87  SDDPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAPRPGDVF 134

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 279 SPPTPKD-TAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHV 337
           +P  P +  ++I++TSG++G PKGV+L+  N+  T   F     ++ +  FL   P+ H+
Sbjct: 129 TPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHI 188

Query: 338 FELLS 342
             L++
Sbjct: 189 IGLIT 193

Length = 488

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 52/234 (22%), Positives = 91/234 (38%), Gaps = 27/234 (11%)

Query: 115 ILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETR 174
           IL ++  + P+  I    + G+ +W S+ +++  A+    GL  LG +     V+     
Sbjct: 28  ILRDQAARYPD-AI--AIICGNRQW-SYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNI 83

Query: 175 AEWMIAAQACFKQNI-PVVTIYATLGEE--AIAHGINETEVNIVITTHDLLPK---FRNI 228
           AE+ I   A  K  + PV+ +++    E  A A  I E  + I+   H L       R +
Sbjct: 84  AEFYIVFFALLKLGVAPVLALFSHRKSELTAYASQI-EPALYIIDRAHSLFDYDDFARQL 142

Query: 229 LKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAI 288
               P +  +I       +      +   E V F                 P    + A 
Sbjct: 143 QSKLPTLRNIIVAGQTGEAELFLWLESPAEPVKF----------------PPTKSDEVAF 186

Query: 289 IMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLS 342
              + GSTGTPK +  TH++   +++   +   +     +L  LP AH + L S
Sbjct: 187 FQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSS 240

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 12/75 (16%)

Query: 269 GSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVH------I 322
             E              + II YTSG+TG PKG VLT +NM      F +A++      +
Sbjct: 134 EIEDRKIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENM------FWNALNNTFAIDL 187

Query: 323 EPNDVFLGYLPLAHV 337
             +D  +  LPL H+
Sbjct: 188 TMHDRSIVLLPLFHI 202

Length = 496

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 69/306 (22%), Positives = 119/306 (38%), Gaps = 71/306 (23%)

Query: 198 LGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGI 257
           L  + I H IN  E  +++    L  +   ILK  P V  ++++      +   +  +GI
Sbjct: 98  LMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGI 157

Query: 258 EIVPFKQIVKRGSESGSRYEGSPPTPKDTAI-IMYTSGSTGTPKGVVLTHDNMISTLKAF 316
           ++  ++ ++       + Y+  P   + TA  I Y++G+TG PKGVV +H ++   L++ 
Sbjct: 158 KVYSYEALL---DGRSTVYDW-PELDETTAAAICYSTGTTGAPKGVVYSHRSLY--LQSL 211

Query: 317 S----DAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGT 372
           S    D++ +   + FL  +P+ HV   LS  V L    A    TPL             
Sbjct: 212 SLRTTDSLAVTHGESFLCCVPIYHV---LSWGVPL---AAFMSGTPLVF----------P 255

Query: 373 KGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAF-EYKRKWAKRGFRCP 431
             D S             L +I      +V+   P    L+      Y +   +R     
Sbjct: 256 GPDLSAPT----------LAKIIATAMPRVAHGVP---TLWIQLMVHYLKNPPER----- 297

Query: 432 LIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEK-----VIQGYGLTETTS 486
                            ++ I  GG+ + P    LIK    E+     V+  +G+TET+ 
Sbjct: 298 ---------------MSLQEIYVGGSAVPP---ILIK--AWEERYGVDVVHVWGMTETSP 337

Query: 487 CATVMH 492
             TV  
Sbjct: 338 VGTVAR 343

Length = 576

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 49.6 bits (118), Expect = 3e-06
 Identities = 51/234 (21%), Positives = 96/234 (41%), Gaps = 33/234 (14%)

Query: 102  TRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQ 161
              +   RC+   Q++AE     P+       V+ D E  ++ ++N  A      L + G 
Sbjct: 4545 AGYPATRCV--HQLVAERARMTPDAVA----VVFDEEKLTYAELNRRANRLAHALIARGV 4598

Query: 162  EPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDL 221
             P   V I  E  AE M+   A  K     V +      E +A+ + ++   +++T   L
Sbjct: 4599 GPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLTQSHL 4658

Query: 222  LPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPP 281
            L +    L +   +++L        + D     +G             +   +       
Sbjct: 4659 LQR----LPIPDGLASL--------ALDRDEDWEG-----------FPAHDPAV----RL 4691

Query: 282  TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLA 335
             P + A ++YTSGSTG PKGV ++H ++++ L A  +   + P+D  L ++  +
Sbjct: 4692 HPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPDDRVLQFMSFS 4745

Length = 5163

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTL 313
            P D A ++YTSGSTG PKGV + H N  + L
Sbjct: 103 DPDDLAYVIYTSGSTGRPKGVAIEHRNAAALL 134

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 7/71 (9%)

Query: 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTL---KAFSDAVHIEPNDVFLGYLPLAHVF 338
            P+D A + YT G+TG  KG +LTH NM++ L   KA    +     ++ +  LPL H+F
Sbjct: 204 VPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYHIF 263

Query: 339 ELLSESV-CLL 348
            L   +V CLL
Sbjct: 264 AL---TVNCLL 271

Length = 560

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 273 GSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYL 332
           G      P    + A    + G+TGTPK +  TH++   +++A ++    +   V+L  L
Sbjct: 178 GLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCAL 237

Query: 333 PLAHVFELLSESV--CLLCG 350
           P AH F L S       L G
Sbjct: 238 PAAHNFPLSSPGALGVFLAG 257

Length = 542

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 48.0 bits (115), Expect = 8e-06
 Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 14/182 (7%)

Query: 140 RSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLG 199
            ++ ++++++ A  +GL +LG      V + A     +++A  A  K    ++ +     
Sbjct: 75  LTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFS 134

Query: 200 EEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEI 259
              +A       V  ++   +       +     R+       D    + +T        
Sbjct: 135 GPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGST-------D 187

Query: 260 VPFKQIVKRGSESGSRYEGSPPTP-KDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD 318
                ++   S +        P P K   I++ TSG+TGTPKG      + ++ L     
Sbjct: 188 ETLDDLIAGSSTA------PLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLS 241

Query: 319 AV 320
            V
Sbjct: 242 RV 243

Length = 549

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 47.9 bits (115), Expect = 8e-06
 Identities = 54/216 (25%), Positives = 86/216 (39%), Gaps = 33/216 (15%)

Query: 114 QILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAET 173
           Q+L     + P+ R    Y      W ++ + N+E +A  KGL +LG E    V I+A  
Sbjct: 20  QLLDRTAARYPD-REALVYRDQGLRW-TYREFNEEVDALAKGLLALGIEKGDRVGIWAPN 77

Query: 174 RAEWMIAAQACFKQNIPVVTI----------YA--TLGEEAIAHGINETEVNIVITTHDL 221
             EW++   A  K    +VTI          YA    G +A+       + + V   ++L
Sbjct: 78  VPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYEL 137

Query: 222 LPKFRNI------LKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSE-SGS 274
            P+              P +  +I++ D+              ++ F +++  G     +
Sbjct: 138 APELATCEPGQLQSARLPELRRVIFLGDEKHPG----------MLNFDELLALGRAVDDA 187

Query: 275 RYEGSPPT--PKDTAIIMYTSGSTGTPKGVVLTHDN 308
                  T  P D   I YTSG+TG PKG  LTH N
Sbjct: 188 ELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRN 223

Length = 559

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 48.0 bits (115), Expect = 9e-06
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 271 ESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLK-----AFSDAVHIEPN 325
           +S    +  P     TA + YTSGST TP GV+++H N+I+  +      F D   + P 
Sbjct: 147 DSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPP 206

Query: 326 D-VFLGYLPLAH 336
           D   + +LP  H
Sbjct: 207 DTTVVSWLPFYH 218

Length = 578

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 12/90 (13%)

Query: 256 GIEIVPFKQIVKRGS--ESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDN----- 308
           G+ ++    +V  G    +G   E  P  P+  A + YTSG+TG PKG V+         
Sbjct: 122 GVRVLALGDLVGLGEPESAGPPIEDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRV 181

Query: 309 -MISTLKAFSDAVHIEPNDVFLGYLPLAHV 337
             +ST        H    +V LG +PL HV
Sbjct: 182 LFMSTQAGLRHGRH----NVVLGLMPLYHV 207

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 15/27 (55%), Positives = 22/27 (81%)

Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMIS 311
           D   I++TSG+TG PKGV ++HDN++S
Sbjct: 144 DNYYIIFTSGTTGKPKGVQISHDNLVS 170

Length = 503

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 45/233 (19%), Positives = 82/233 (35%), Gaps = 58/233 (24%)

Query: 135 GDYEWR--SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVV 192
           G  +WR  ++ +     +A  + L  LG +P   V+I +    E  +   A  +  +P  
Sbjct: 74  GHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAA 133

Query: 193 TI---YATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKL-TPRVSTLIYMEDQLTST 248
            +   Y+ +                   +HD   K +++  L  PRV   ++ +      
Sbjct: 134 PVSPAYSLM-------------------SHDHA-KLKHLFDLVKPRV---VFAQSGAP-- 168

Query: 249 DTTNFKQGIEIVPFK--QIVKRGS----ESGSRYE---GSPPT-----------PKDTAI 288
               F + +  +      +V         +   +     +PPT           P   A 
Sbjct: 169 ----FARALAALDLLDVTVVHVTGPGEGIASIAFADLAATPPTAAVAAAIAAITPDTVAK 224

Query: 289 IMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPND---VFLGYLPLAHVF 338
            ++TSGSTG PK V+ T   M + +         EP+    V L ++P  H  
Sbjct: 225 YLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTM 277

Length = 624

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 42/202 (20%), Positives = 64/202 (31%), Gaps = 46/202 (22%)

Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLS 342
             D    MYTSG+TG PKGV +  + + +       A+ +  +DVF         +    
Sbjct: 87  DDDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAIDLRDDDVFWNIADPGWAY---- 142

Query: 343 ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKV 402
                  G+    + PL M            G  +V      TA     D + +      
Sbjct: 143 -------GLYYAITGPLAM------------GITTVFLEGGFTA-ENTYDVLER------ 176

Query: 403 SRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPD 462
                     FA +    R     G       K            ++R+  S G PL+P+
Sbjct: 177 -----LGVTNFAGSPTAYRMLMAAGADAAARIK-----------LKLRVASSAGEPLNPE 220

Query: 463 THELIKVCLCEKVIQGYGLTET 484
                +  L   +   YG TET
Sbjct: 221 VVRWFQANLGVTIHDHYGQTET 242

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query: 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAH 336
            P D A ++YTSG+TG PKG  ++    + T    S  ++++  D     +PL H
Sbjct: 85  DPDDPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTYTCMPLYH 139

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 16/47 (34%), Positives = 29/47 (61%)

Query: 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVF 328
            P+D A++ +TSG+TG PKGV+  H  +++        + + P+DV+
Sbjct: 87  DPEDPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVY 133

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 279 SPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEP-NDVFLGYLPLAH 336
           +PP     A++  T+GSTGTP+  +L+   ++S L+  +  V ++   DV   +LPL H
Sbjct: 147 TPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYH 205

Length = 525

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 21/83 (25%), Positives = 36/83 (43%)

Query: 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTI 194
           G  E  +F Q+ D +      LR LG E    V ++     E  IA  A +K     V +
Sbjct: 2   GTREEYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPL 61

Query: 195 YATLGEEAIAHGINETEVNIVIT 217
               G +A+ H + ++   +++T
Sbjct: 62  SVLFGPDAVEHRLRDSGARVLVT 84

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 45/217 (20%), Positives = 82/217 (37%), Gaps = 28/217 (12%)

Query: 141 SFNQVNDEAEAFGKGLRSL--GQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATL 198
           S+ +    + A    LR+      P H V +  +   E+ +   A     I  V +  T 
Sbjct: 30  SWREHIRGSAARAAALRARLDPTRPPH-VGVLLDNTPEFSLLLGAAALSGIVPVGLNPTR 88

Query: 199 GEEAIAHGINETEVNIVITTHDLLPKFRNILK-LTPRVSTLIYMEDQLTSTDTTNFKQGI 257
              A+A  I   +  +V+T          +L  L P V  +        + D+  +    
Sbjct: 89  RGAALARDIAHADCQLVLTE----SAHAELLDGLDPGVRVI--------NVDSPAWAD-- 134

Query: 258 EIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS 317
           E+   +          +        P D  ++++TSG++G PK V  TH  + S     +
Sbjct: 135 ELAAHR---------DAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLA 185

Query: 318 DAVHIEPNDVFLGYLPLAHVFELLSE-SVCLLCGVAI 353
               + P+DV    +PL H   +++  +V L  G +I
Sbjct: 186 QRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASI 222

Length = 529

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 44/202 (21%), Positives = 68/202 (33%), Gaps = 56/202 (27%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAE----WMIAAQACFKQNIPVVT--I 194
           +F ++N+ +       ++ G      V +F E R E    W+  A+      I V T  I
Sbjct: 5   TFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAK------IGVETALI 58

Query: 195 YATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFK 254
            + L  E++ H I  ++   +I              L P ++       +  S D  NF+
Sbjct: 59  NSNLRLESLLHCITVSKAKALIFNL-----------LDPLLTQ---SSTEPPSQDDVNFR 104

Query: 255 QGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLK 314
                                         D    +YTSG+TG PK  V+ H        
Sbjct: 105 ------------------------------DKLFYIYTSGTTGLPKAAVIVHSRYYRIAA 134

Query: 315 AFSDAVHIEPNDVFLGYLPLAH 336
               A  + P DV    LPL H
Sbjct: 135 GAYYAFGMRPEDVVYDCLPLYH 156

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLA 335
           P + A ++YTSGSTG PKGV ++H  + + +   ++ + +  +D  L     A
Sbjct: 655 PDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFA 707

Length = 3956

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 8/81 (9%)

Query: 276  YEGSPPT----PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGY 331
            Y  +P      P+  A ++YTSGSTG PKGVV++H  +    +A  +   +  +D  L +
Sbjct: 2321 YSDAPLPFLSLPQHQAYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGMRADDCELHF 2380

Query: 332  LPLAHVFELLSES--VCLLCG 350
              +   F+  SE   V LLCG
Sbjct: 2381 YSIN--FDAASERLLVPLLCG 2399

Length = 4334

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 34/171 (19%), Positives = 69/171 (40%), Gaps = 29/171 (16%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           ++ Q+ ++++     ++      +  ++++       ++A     K     + +  ++  
Sbjct: 27  TYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIPS 86

Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
           E I   I      +VI T +L     +I  +  ++ TL  +E   TS    +F   ++  
Sbjct: 87  ERIEMIIEAAGPELVIHTAEL-----SIDAVGTQIITLSALEQAETSGGPVSFDHAVK-- 139

Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIS 311
                                   D   I+YTSGSTG PKGV ++HDN++S
Sbjct: 140 ----------------------GDDNYYIIYTSGSTGNPKGVQISHDNLVS 168

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 263 KQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHI 322
           K I  R   +G+R      +  D A++ +TSG+TG PK V+ TH   +  L   +  + +
Sbjct: 62  KDIRYRLERAGAR--AIVTSADDPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDL 119

Query: 323 EPNDVF 328
            P+D+ 
Sbjct: 120 RPDDLH 125

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 58/283 (20%), Positives = 98/283 (34%), Gaps = 48/283 (16%)

Query: 134 MGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVT 193
           +G   WR   ++++ ++A    L++L       V I       ++ A  A  +    ++ 
Sbjct: 66  LGTLTWR---ELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILL 122

Query: 194 IYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTP---RVSTLIYMEDQLTSTDT 250
           +  +    A+A  +    V+ VI   +        L   P   R+      +  LT    
Sbjct: 123 LNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDEDHDLTVEVL 182

Query: 251 TNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMI 310
                G                        PT +   +I+ TSG+TGTPKG   +    I
Sbjct: 183 IAAHAGQRP--------------------EPTGRKGRVILLTSGTTGTPKGARRSGPGGI 222

Query: 311 STLKAFSDAVHIEPNDVFLGYLPLAHV--FELLSESVCLLCGVAIGYSTPLTMIDTSSKI 368
            TLKA  D       +  +   P+ H   F  L  +  L C          T++      
Sbjct: 223 GTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLAC----------TIV-----T 267

Query: 369 KRGTKGDASV-----LHPTALTAVPLILDRIYKGVHEKVSRAS 406
           +R    +A++        T L  VP++ DRI     E  +R S
Sbjct: 268 RRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYS 310

Length = 537

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 39/198 (19%)

Query: 156 LRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIV 215
           L+ +G +    VVI+     E  IA  AC +       ++A    E++A  I + +  +V
Sbjct: 137 LKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVV 196

Query: 216 ITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSR 275
           IT         N +K  P+    I ++D + +    + K G+ +      +   ++   +
Sbjct: 197 ITC--------NAVKRGPKT---INLKDIVDAALDESAKNGVSV---GICLTYENQLAMK 242

Query: 276 YEGSP----------------PT--------PKDTAIIMYTSGSTGTPKGVVLTHDN-MI 310
            E +                 PT         +D   ++YTSGSTG PKGV+ T    M+
Sbjct: 243 REDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV 302

Query: 311 STLKAFSDAVHIEPNDVF 328
            T   F  A   +P DV+
Sbjct: 303 YTATTFKYAFDYKPTDVY 320

Length = 666

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 44.6 bits (106), Expect = 9e-05
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 7/78 (8%)

Query: 431 PLIDKVVFGQTKKLLGGRVRL-----ILSGGAPLSPDTHELIKVCLCE-KVIQGYGLTET 484
           P++  +V    K  +  +  L     I SG APL  +  E  +      ++ QGYG+TE 
Sbjct: 254 PVVPPIVLALVKHPIVDKYDLSSLKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTE- 312

Query: 485 TSCATVMHLNDMGNINSN 502
           +S  T M      +    
Sbjct: 313 SSPVTTMCPVPEKDPKPG 330

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 50/246 (20%), Positives = 92/246 (37%), Gaps = 39/246 (15%)

Query: 141  SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
            S+ ++N  A      L   G  P   V +  E   E ++   A  K     V +     E
Sbjct: 3084 SYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLDPEYPE 3143

Query: 201  EAIAHGINETEVNIVIT-THDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEI 259
            E +A+ + ++   ++++ +H  LP                               QG+++
Sbjct: 3144 ERLAYMLEDSGAQLLLSQSHLRLPL-----------------------------AQGVQV 3174

Query: 260  VPFKQIVKRGSESGSRYEGSPP---TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAF 316
            +     + RG E+ +  E +P     P++ A ++YTSGSTG PKGV + H  + + L   
Sbjct: 3175 L----DLDRGDENYA--EANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWM 3228

Query: 317  SDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDA 376
              A  +   D  L +   +    +      L+ G  +  + P    D +  ++       
Sbjct: 3229 QQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGARVVLAGPEDWRDPALLVELINSEGV 3288

Query: 377  SVLHPT 382
             VLH  
Sbjct: 3289 DVLHAY 3294

Length = 5163

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 44/205 (21%), Positives = 77/205 (37%), Gaps = 32/205 (15%)

Query: 136 DYEWRSFNQVNDEAEAFGKGLRSL--GQEPRHNVVIFAETRA--EWMIAAQACFKQNIPV 191
            + WR   +V  EA A    L +L     P H  V+   T     W+ AA         +
Sbjct: 26  TWTWR---EVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALG---GYVL 79

Query: 192 VTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT 251
           V +  T    A+A  I   +  +++T  +  P     L L            ++   DT 
Sbjct: 80  VGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDG-LDLP---------GVRVLDVDTP 129

Query: 252 NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIS 311
            + + +           G+ +  R         D  ++++TSG+TG PK V  +H  +  
Sbjct: 130 AYAELVA--------AAGALTPHR----EVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAF 177

Query: 312 TLKAFSDAVHIEPNDVFLGYLPLAH 336
             +A ++   +  +DV    +PL H
Sbjct: 178 AGRALTERFGLTRDDVCYVSMPLFH 202

Length = 540

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 43.7 bits (104), Expect = 2e-04
 Identities = 45/221 (20%), Positives = 76/221 (34%), Gaps = 41/221 (18%)

Query: 132 YVM-GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIP 190
            +M    E  ++ ++   +     GLR+LG      V I  E   E+     A  +  + 
Sbjct: 3   VIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLY 62

Query: 191 VVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDT 250
              I   L    IA+ ++++   ++I +  L      +    P    L+ +         
Sbjct: 63  YTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVA------- 115

Query: 251 TNFKQGIEIVPFKQIVKRGSESGSR-YE----GSPPTPKDT----AIIMYTSGSTGTPKG 301
                             G   G R YE      P TP       A ++Y+SG+TG PKG
Sbjct: 116 ------------------GPVPGFRSYEEALAAQPDTPIADETAGADMLYSSGTTGRPKG 157

Query: 302 VV--LTH----DNMISTLKAFSDAVHIEPNDVFLGYLPLAH 336
           +   L      +     L      ++  P+ V+L   PL H
Sbjct: 158 IKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYH 198

Length = 502

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 283  PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLS 342
             ++ A ++YTSGSTG PKGV + H  + + L   ++A  ++ ND  L ++  +  F+   
Sbjct: 3236 GENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFS--FDGAQ 3293

Query: 343  ESV--CLLCG 350
            E     L+CG
Sbjct: 3294 ERFLWTLICG 3303

Length = 3956

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 28/190 (14%)

Query: 156 LRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIV 215
            RSLG +   +V IF E    ++    A  +  +    + + L     A+ ++++    +
Sbjct: 41  FRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARAL 100

Query: 216 ITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSR 275
           IT+   L   R +LK  P V     + D     +          V + + V         
Sbjct: 101 ITSAAKLDVARALLKQCPGV-RHRLVLDGDGELE--------GFVGYAEAVA-------- 143

Query: 276 YEGSPPTPKDT----AIIMYTSGSTGTPKGVV--LTHDNMISTLKAFS---DAVHIEPND 326
             G P TP         ++Y+SG+TG PKG+   L      + L   +          + 
Sbjct: 144 --GLPATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDM 201

Query: 327 VFLGYLPLAH 336
           V+L   PL H
Sbjct: 202 VYLSPAPLYH 211

Length = 511

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 4/41 (9%)

Query: 281 PTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVH 321
           P   D A+++ TSG+TGTPKG +LT   + ++    +DA H
Sbjct: 32  PIDDDVALVVATSGTTGTPKGAMLTAAALTAS----ADATH 68

Length = 358

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 42.2 bits (100), Expect = 5e-04
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 136 DYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIY 195
           D    S+ + N  A  +   LR+LG +    V +  E R E+++A  A  K       I 
Sbjct: 1   DRRL-SYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALIN 59

Query: 196 ATLGEEAIAHGINETEVNIVITT 218
            T   E +AH IN ++   VI  
Sbjct: 60  TTQRGEVLAHCINVSDARAVIVD 82

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 42.4 bits (101), Expect = 5e-04
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 11/46 (23%)

Query: 289 IMYTSGSTGTPKGVV------LTHDNMISTLKAFSDAVHIEPNDVF 328
           I+YTSGSTG PKGV+      L +  M  T+K   D    +  DV+
Sbjct: 250 ILYTSGSTGKPKGVLHTTGGYLVYAAM--TMKYVFD---YKDGDVY 290

Length = 637

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 34/144 (23%), Positives = 53/144 (36%), Gaps = 20/144 (13%)

Query: 278 GSPPTPKDTAIIMYT-SGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAH 336
           G      D   +++T SG+T  PK V+     ++   +A + A   +P  V L  LP   
Sbjct: 174 GERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCG 233

Query: 337 VFELLSESVCLLCGVAIGYSTPLTMI---DTSSKIKRGTKGDASVLHPTALTAVPLILDR 393
           VF   +    LL  +A G   PL      D +   +        V H           D 
Sbjct: 234 VFGFST----LLGALAGG--APLVCEPVFDAARTARA--LRRHRVTHTFG-------NDE 278

Query: 394 IYKGVHEKVSRASPFKRA-LFAFA 416
           + + + +     + F  A LF FA
Sbjct: 279 MLRRILDTAGERADFPSARLFGFA 302

Length = 540

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 41.4 bits (98), Expect = 7e-04
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 449 VRLILSGGAPLSPDTH-ELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
           +R  +SGGAP+ P+    + +     ++  GYG+TET+   T    +D
Sbjct: 119 LRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDD 166

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 41.8 bits (99), Expect = 8e-04
 Identities = 56/222 (25%), Positives = 94/222 (42%), Gaps = 38/222 (17%)

Query: 128 IFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQ 187
           I++    G+    ++ +++ E   F   L+SLG +    V I+     E  IA  AC   
Sbjct: 77  IWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLAC--A 134

Query: 188 NIPVVT--IYATLGEEAIAHGINETEVNIVITTHDLLPKFRNI---------LKLTPR-V 235
            I  +   ++     EA+A  IN+    +VIT  + L   + I         L+  P  V
Sbjct: 135 RIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSV 194

Query: 236 STLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTP---KDTAIIMYT 292
             ++ +  + T      + +G + V +  ++ + S          P P   +D   I+YT
Sbjct: 195 EHVLVV--RRTGNPV-PWVEGRD-VWWHDLMAKASAY------CEPEPMDSEDPLFILYT 244

Query: 293 SGSTGTPKGVV------LTHDNMISTLKAFSDAVHIEPNDVF 328
           SGSTG PKGV+      L +  M  T+K   D   I+  D+F
Sbjct: 245 SGSTGKPKGVLHTTGGYLLYAAM--TMKYVFD---IKDGDIF 281

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 42.1 bits (99), Expect = 9e-04
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 287  AIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLA 335
            A ++YTSGSTG PKGV  TH  +   L+       ++ +DV +   P++
Sbjct: 1276 AYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPIS 1324

Length = 4334

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 19/84 (22%), Positives = 33/84 (39%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           S+ ++ + +  F   L SLG      V        E  +AA    K       +++  G 
Sbjct: 2   SYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFGP 61

Query: 201 EAIAHGINETEVNIVITTHDLLPK 224
           E I   +   E  ++ITT +L  +
Sbjct: 62  EPIRDRLELGEAKVLITTPELYER 85

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 6/51 (11%)

Query: 291 YTSGSTGTPKGVVLTHDNMISTLKAFS----DAVHIEPNDVFLGYLPLAHV 337
           YTSG+TG PKG + +H +  + L A+     DA+ +   D  L  +P+ HV
Sbjct: 183 YTSGTTGNPKGALYSHRS--TVLHAYGAALPDAMGLSARDAVLPVVPMFHV 231

Length = 539

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 53/217 (24%), Positives = 87/217 (40%), Gaps = 50/217 (23%)

Query: 245 LTSTDTTNFKQGIEIV---------PFKQIVKRGS-------ESGS-RYEGSPPTPKDTA 287
           L     ++FK  + IV           +  + +G+       E+G   +   PP  +  +
Sbjct: 138 LAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEKFLETGDPEFAWKPPADEWQS 197

Query: 288 IIM-YTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPND--VFLGYLPLAHVFELLSES 344
           I + YTSG+T +PKGVVL H    + L A S+A+    N+  V+L  LP+ H        
Sbjct: 198 IALGYTSGTTASPKGVVLHHRG--AYLMALSNALIWGMNEGAVYLWTLPMFHC-----NG 250

Query: 345 VCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKG------- 397
            C    +A    T + +   ++K       +  V H     A P++L+ I          
Sbjct: 251 WCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTH---FCAAPVVLNTIVNAPKSETIL 307

Query: 398 -----VHEKVSRASPFKRALFAFAFEYKRKWAKRGFR 429
                VH   + A+P    LFA         +++GFR
Sbjct: 308 PLPRVVHVMTAGAAPPPSVLFAM--------SEKGFR 336

Length = 567

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 281 PTPKD-TAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFE 339
           P+P D  A    + GSTGTPK +  TH++   +++   +     P   +L  LP AH + 
Sbjct: 178 PSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYP 237

Query: 340 LLS 342
           + S
Sbjct: 238 MSS 240

Length = 536

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 276 YEGSPPTPKDTAIIM-YTSGSTGTPKGVVLTHDNMISTLKAFSDAVH--IEPNDVFLGYL 332
           +  + P  +  AI + YTSG+TG PKGVV  H    + L A S+ +   +  + V+L  L
Sbjct: 173 FAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRG--AYLNALSNILAWGMPKHPVYLWTL 230

Query: 333 PLAH 336
           P+ H
Sbjct: 231 PMFH 234

Length = 545

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 40.2 bits (95), Expect = 0.002
 Identities = 18/51 (35%), Positives = 25/51 (49%)

Query: 287 AIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHV 337
           A +  TSGSTG PK  V T    +++ +     +     D +L  LPL HV
Sbjct: 138 ATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHV 188

Length = 458

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 10/79 (12%)

Query: 277 EGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD--AVHIEPNDVFLGYLPL 334
             +   P D   +MYTSG+T  PKGV+ ++ N+    K+     A+ +  ++  L   PL
Sbjct: 142 PQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNL--HWKSIDHVIALGLTASERLLVVGPL 199

Query: 335 AHVFELLSESVCLLCGVAI 353
            HV          L G+A+
Sbjct: 200 YHV------GAFDLPGIAV 212

Length = 497

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 43/200 (21%), Positives = 79/200 (39%), Gaps = 18/200 (9%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           ++ +V  +   F K LRSLG      VV+     AE+ I A               T  E
Sbjct: 57  TYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALE 116

Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
             I          +++T      K + +      +  ++  E+++              V
Sbjct: 117 SEIKKQAEAAGAKLIVTNDTNYGKVKGL-----GLPVIVLGEEKIEGA-----------V 160

Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTL--KAFSD 318
            +K++++    +G   +       D   + ++SG+TG  KGV+LTH N+++ L    FS 
Sbjct: 161 NWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSV 220

Query: 319 AVHIEPNDVFLGYLPLAHVF 338
              +    V LG +P  H++
Sbjct: 221 GPEMIGQVVTLGLIPFFHIY 240

Length = 546

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 42/206 (20%), Positives = 76/206 (36%), Gaps = 17/206 (8%)

Query: 133 VMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAE-WMIAAQACFKQNIPV 191
           V+GD    ++ Q+ D    + +   +LG      V + +  R E  M    A     +  
Sbjct: 32  VLGDTRL-TYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQL-AGLRR 89

Query: 192 VTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT 251
             ++     +  A+ + +  ++ +I   D  P     L L  RV +L ++       D  
Sbjct: 90  TALHPLGSLDDHAYVLEDAGISTLIV--DPAPFVERALALLARVPSLKHVLTLGPVPDGV 147

Query: 252 NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIS 311
           +            +V            +   P D A + YT G+TG PKGV+ TH ++ +
Sbjct: 148 DLLAAAAKFGPAPLV------------AAALPPDIAGLAYTGGTTGKPKGVMGTHRSIAT 195

Query: 312 TLKAFSDAVHIEPNDVFLGYLPLAHV 337
             +          +  FL   PL+H 
Sbjct: 196 MAQIQLAEWEWPADPRFLMCTPLSHA 221

Length = 524

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score = 39.4 bits (93), Expect = 0.004
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 448 RVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVM 491
            +RLI+ G AP+  +    +        +QGYG+TET    T++
Sbjct: 116 SLRLIIYGAAPMPAELKRAMIEWFGPVFVQGYGMTETGPTTTLL 159

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 39.5 bits (93), Expect = 0.004
 Identities = 40/209 (19%), Positives = 69/209 (33%), Gaps = 30/209 (14%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYAT--- 197
           S+ ++  +       LR LG +P   V  +     E +IA  A         +I A    
Sbjct: 88  SWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLAT-------ASIGAIWSS 140

Query: 198 ----LGEEAIAHGINETEVNIVIT---------THDLLPKFRNILKLTPRVSTLIYMEDQ 244
                G EA+     + E  ++            HD   K   I+K  P +  ++ +   
Sbjct: 141 CSPDFGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPSLEAVVVVPYL 200

Query: 245 LTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTP-KDTAIIMYTSGSTGTPKGVV 303
            +       K     + +   +     +   +E     P      I+Y+SG+TG PK +V
Sbjct: 201 SSDAQPAALKFSALTLLW--SLAGDRAAPLEFE---RLPFDHPLWILYSSGTTGLPKCIV 255

Query: 304 LTHDNMIST-LKAFSDAVHIEPNDVFLGY 331
                 +   LK       + P D    Y
Sbjct: 256 HGAGGTLLQHLKEHGLHCDLRPGDRLFYY 284

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 17/77 (22%)

Query: 291 YTSGSTGTPKGVVLTHDNMISTLKAFSDAVHI-------EPNDVFLGYLPLAHVFELLSE 343
           +TSG+TG PK  VLTH  M     AF    H+          D  L   PL+H       
Sbjct: 170 FTSGTTGRPKAAVLTHGQM-----AFVITNHLADLMPGTTEQDASLVVAPLSH-----GA 219

Query: 344 SVCLLCGVAIGYSTPLT 360
            +  LC VA G +T L 
Sbjct: 220 GIHQLCQVARGAATVLL 236

Length = 528

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	504
KOG1180|consensus	678		100.0
KOG1256|consensus	691		100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
KOG1177|consensus	596		100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
KOG1176|consensus	537		100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PLN02654	666	acetate-CoA ligase	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
KOG1179|consensus	649		100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PLN02479	567	acetate-CoA ligase	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
KOG1175|consensus	626		100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.94
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.93
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.83
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.78
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.7
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.65
KOG3628|consensus	1363		99.6
KOG1178|consensus	1032		99.45
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.28
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	98.77
KOG3628|consensus	1363		98.42
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	96.87
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	95.15
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	93.27
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	90.17
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	88.62
PLN02620	612	indole-3-acetic acid-amido synthetase	86.95

>KOG1180|consensus

Probab=100.00  E-value=5.1e-86  Score=642.68  Aligned_cols=447  Identities=44%  Similarity=0.764  Sum_probs=415.5

Q ss_pred             hccccceeeeccCCCCCceeecCCCCCCCccccccCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeee
Q psy6874          53 SLSSKKKAEIISKDNKSVTIRSISGPQENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKY  132 (504)
Q Consensus        53 ~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~  132 (504)
                      ....+..+.+..++.++.+||+....+++.... .++..|++++|+++++++.++.|+++|++++++.+.|+|||+|+++
T Consensus         4 ~~~~~V~~~~~~n~~e~~p~Rnv~~~~~L~~~~-~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~   82 (678)
T KOG1180|consen    4 EKKYRVKAKPAANEHETAPYRNVRSFDGLVSPP-NPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKY   82 (678)
T ss_pred             chhcccccCCCCCCCCCccccccccCCCccCCC-CCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEE
Confidence            345566666664545589999999877777766 8999999999999999999999999999999999999999999999


Q ss_pred             ecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCe-EEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhccc
Q psy6874         133 VMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHN-VVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETE  211 (504)
Q Consensus       133 ~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~-Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~  211 (504)
                      ..|+|.|+||.|+.+++.++|++|..+|++++++ |+||++++.+|+++++||++.|.++|++|.+++++.+.|.|++++
T Consensus        83 ~Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~  162 (678)
T KOG1180|consen   83 ELGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETE  162 (678)
T ss_pred             eccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhcccc
Confidence            9999999999999999999999999999998877 999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccccccc----CCCceeeehhHHHhcccccCCCCCCCCCCCCCEE
Q psy6874         212 VNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNF----KQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTA  287 (504)
Q Consensus       212 ~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  287 (504)
                      ++.++||.++++++....+..+.+++||+++....+..+...    ..++.+++|+++++.+...  ..++.++.++|+|
T Consensus       163 ~~~i~T~~~LL~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~--~~~~~~P~p~Dia  240 (678)
T KOG1180|consen  163 STAIFTDSELLPKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKEN--EIPPHPPKPSDIA  240 (678)
T ss_pred             ceEEEeCHHHHHHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcC--CCCCCCCCCCceE
Confidence            999999999999999999999999999999864222222222    2578999999999999876  3455666889999


Q ss_pred             EEEecCCCCCCcceEEecHHHHHHHHHhhhhcc-CCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchh
Q psy6874         288 IIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV-HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSS  366 (504)
Q Consensus       288 ~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~  366 (504)
                      +|||||||||.||||+++|+|+++.+.++.... .+++.|+++.++||+|++++.+.+.|++.|+.++|.++.++.|.++
T Consensus       241 ~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~  320 (678)
T KOG1180|consen  241 CIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSS  320 (678)
T ss_pred             EEEEcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccch
Confidence            999999999999999999999999999998876 8899999999999999999999999999999999999999999999


Q ss_pred             hhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh-cCCCcchhhHHhHHHHHHhc
Q psy6874         367 KIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAK-RGFRCPLIDKVVFGQTKKLL  445 (504)
Q Consensus       367 ~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~~  445 (504)
                      +|++++.+|+..+|||+|.+||++|+++.+.+.+++++.+.+.+++|..+|.+|+.... +++.++++|+++|+++|.++
T Consensus       321 ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~l  400 (678)
T KOG1180|consen  321 KIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALL  400 (678)
T ss_pred             hhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999988 88999999999999999999


Q ss_pred             CCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccceeecccCCCCCccCCC
Q psy6874         446 GGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNG  503 (504)
Q Consensus       446 g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~~~~~~d~~~~~s~G  503 (504)
                      ||+||.+++||+|||+++++|+..|+|||+.||||+||||+.+++.+++|+..+ .+|
T Consensus       401 GG~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g-~vG  457 (678)
T KOG1180|consen  401 GGNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFSTG-RVG  457 (678)
T ss_pred             CCceEEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhcccc-ccc
Confidence            999999999999999999999999999999999999999999999999998776 455

>KOG1256|consensus

Probab=100.00  E-value=2.9e-65  Score=520.00  Aligned_cols=409  Identities=36%  Similarity=0.579  Sum_probs=349.1

Q ss_pred             CceeecCCCCC-CCccccccCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHH
Q psy6874          69 SVTIRSISGPQ-ENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVND  147 (504)
Q Consensus        69 ~~~~r~~~~~~-~~~~~~~~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~  147 (504)
                      ++.+|+.-.+. +....+ ..+..|++++|++.+..+|+.+|+++|....               ..+.|+|+||+|+.+
T Consensus        53 ~~~~~s~~~~~~~~~~~~-~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~---------------~~~~~~~~tY~q~~e  116 (691)
T KOG1256|consen   53 DGSRRSAVLPREELFSCP-FDGPLTLYEGFRRSVEKSGNGPMLGTRVIVD---------------GKGPYEWLTYKQVYE  116 (691)
T ss_pred             CCceeeeeccCCCCCCCC-CCCcccHHHHhhcchhccCCCCceeEEeccc---------------CCCCcEEEEHHHHHH
Confidence            34566665543 222222 6789999999999999999999999986321               237899999999999


Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcC-CchhHHH
Q psy6874         148 EAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTH-DLLPKFR  226 (504)
Q Consensus       148 ~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~-~~~~~~~  226 (504)
                      ++.++|++|+++|+++++.|+|+..||+||+++.+||..+|++.||||.+++++++.++++++++.++++|. +..+++.
T Consensus       117 ~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll  196 (691)
T KOG1256|consen  117 RAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLL  196 (691)
T ss_pred             HHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999994 4445555


Q ss_pred             HHhh--cCCCceEEEEEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEe
Q psy6874         227 NILK--LTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVL  304 (504)
Q Consensus       227 ~~~~--~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~  304 (504)
                      +...  ..|.+|.+|.+++............++.+++|+++++.+........ .++.+||.|.|+|||||||.|||||+
T Consensus       197 ~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~-~~p~p~d~atI~yTSGTTG~PKGVML  275 (691)
T KOG1256|consen  197 EIKENDSLPSLKAIIQLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPR-VPPKPDDLATICYTSGTTGNPKGVML  275 (691)
T ss_pred             hhcccccCccceeEEEecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCC-CCCCccceEEEEEcCCCCCCCceEEE
Confidence            5544  37889999999876434444455567899999999999975422222 68899999999999999999999999


Q ss_pred             cHHHHHHHHHhhhhcc------CCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccc
Q psy6874         305 THDNMISTLKAFSDAV------HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASV  378 (504)
Q Consensus       305 th~~l~~~~~~~~~~~------~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~  378 (504)
                      ||.|+++.+.......      ....+|+++++|||+|+++.+.....+..|++|++..+....         ..+++++
T Consensus       276 TH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~---------l~~dlk~  346 (691)
T KOG1256|consen  276 THRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILK---------LTDDLKE  346 (691)
T ss_pred             eccceeehhhhhhhhhhcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHH---------HHHHHHH
Confidence            9999999765422211      233479999999999999999988888999999998754321         1346899


Q ss_pred             cCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH-HHHhcCC---CcchhhHHhHHHHHHhcCCcEEEEEE
Q psy6874         379 LHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKR-KWAKRGF---RCPLIDKVVFGQTKKLLGGRVRLILS  454 (504)
Q Consensus       379 ~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~~~~~~---~~~~~~~~~~~~~~~~~g~~lr~i~~  454 (504)
                      ++||++.+||++|+++++.+++++.+.+.+++.+|++|+.+|+ .+..+|.   .++++|+++|++++..+|+++|.+++
T Consensus       347 lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~s  426 (691)
T KOG1256|consen  347 LKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIIS  426 (691)
T ss_pred             hCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEe
Confidence            9999999999999999999999999999999999999999999 5566664   47899999999999999999999999


Q ss_pred             ccCCCCHHHHHHHHHHhCCceeeeccccccccceeecccCCCCCccCCCC
Q psy6874         455 GGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNGL  504 (504)
Q Consensus       455 gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~~~~~~d~~~~~s~G~  504 (504)
                      |+||+++++.+++|..+||+|++|||+|||++.++...++|. ..+++|.
T Consensus       427 GaAPls~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~~~d~-~lgsvG~  475 (691)
T KOG1256|consen  427 GAAPLSPEVLTFFRAALGCRVLEGYGLTETSAGTTLTLPGDN-VLGSVGP  475 (691)
T ss_pred             cCCCCCHHHHHHHHHhcCceeeecccccccCCceEeccCCCC-CCCCcCC
Confidence            999999999999999999999999999999988888888886 7778873

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=5.6e-62  Score=529.58  Aligned_cols=467  Identities=41%  Similarity=0.655  Sum_probs=390.7

Q ss_pred             hhhccccccceehccCchhhhhccccceeeeccCCCCCceeecCCCCCCCccccccCCCCcHHHHHHHHHHhCCCCcccc
Q psy6874          32 FVCDIITYPVYLFLQRPWEKKSLSSKKKAEIISKDNKSVTIRSISGPQENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLG  111 (504)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~p~~~al~  111 (504)
                      ++|+++++++|.+++.+|.++...++....+...++ ..+||+...+ .+.... .++..|+.++|++.++++||++|++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~-~~~~~~-~~~~~t~~~l~~~~~~~~pd~~al~   78 (696)
T PLN02387          2 GAYIVGVLVPLLLTLLLRGSKKGKKRGVPVDVGGEP-GYAIRNARFP-ELVETP-WEGATTLAALFEQSCKKYSDKRLLG   78 (696)
T ss_pred             ceEEEEecchhheeechhcccccccceecCCCCCCC-CCceecCccc-cccccC-CCCCCCHHHHHHHHHHHCCCCceEE
Confidence            478999999999999999877777766655544444 4469999854 333333 5788999999999999999999999


Q ss_pred             eecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeE
Q psy6874         112 TRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPV  191 (504)
Q Consensus       112 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~  191 (504)
                      +|.+...+.+..++|+.|++...++|+|+||+|+.++++++|++|.++|+++||+|+|+++|++||+++++||+++|+++
T Consensus        79 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~  158 (696)
T PLN02387         79 TRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITV  158 (696)
T ss_pred             EecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeE
Confidence            98766555555677888888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcccc-cccCCCceeeehhHHHhccc
Q psy6874         192 VTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDT-TNFKQGIEIVPFKQIVKRGS  270 (504)
Q Consensus       192 v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  270 (504)
                      +|+|++++++++.++|++++++++|++.+..+++.++....+.++.+|++++....... .....+..+.+|+++.+.+.
T Consensus       159 vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (696)
T PLN02387        159 VTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGK  238 (696)
T ss_pred             EEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhc
Confidence            99999999999999999999999999988777777777777889999988753111000 00122456778888876654


Q ss_pred             ccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhcc-CCCCCcEEEEecChHHHHHHHHHHHHHHh
Q psy6874         271 ESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV-HIEPNDVFLGYLPLAHVFELLSESVCLLC  349 (504)
Q Consensus       271 ~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~lPl~h~~~~~~~~~~l~~  349 (504)
                      ..  ..+...+.++|+++|+|||||||.||||++||+|+++++......+ .+.++|++++++|++|++++.....++..
T Consensus       239 ~~--~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~  316 (696)
T PLN02387        239 EN--PVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELAAESVMAAV  316 (696)
T ss_pred             cC--CCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEEEEECcHHHHHHHHHHHHHHHh
Confidence            32  2223345689999999999999999999999999999888776554 67889999999999999999887778899


Q ss_pred             CCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhc---
Q psy6874         350 GVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKR---  426 (504)
Q Consensus       350 G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~---  426 (504)
                      |+++.+.++..+.+....+....+++++.++||++.+||++++++.+.+..++...+.+.+.+|++++.+++.....   
T Consensus       317 g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~  396 (696)
T PLN02387        317 GAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWF  396 (696)
T ss_pred             CCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCc
Confidence            99999987776666555555566778999999999999999999999998888888999999999999998876543   


Q ss_pred             ---CCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccceeecccCCCCCccCCC
Q psy6874         427 ---GFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNG  503 (504)
Q Consensus       427 ---~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~~~~~~d~~~~~s~G  503 (504)
                         +..++++|+++|+++++.+|+++|.+++||+|+++++.++++.++|++++|+||+||+++.+++...++. ..+++|
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~-~~gsvG  475 (696)
T PLN02387        397 GAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDT-SVGRVG  475 (696)
T ss_pred             ccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcCCCeeEeechhhcccceeecCcccC-CCCccC
Confidence               3467789999999999999999999999999999999999999899999999999999887777766553 445666


Q ss_pred             C
Q psy6874         504 L  504 (504)
Q Consensus       504 ~  504 (504)
                      .
T Consensus       476 ~  476 (696)
T PLN02387        476 P  476 (696)
T ss_pred             C
Confidence            3

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.2e-56  Score=478.49  Aligned_cols=402  Identities=22%  Similarity=0.349  Sum_probs=324.8

Q ss_pred             CCCceeecCCCCCCCccccccCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHH
Q psy6874          67 NKSVTIRSISGPQENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVN  146 (504)
Q Consensus        67 ~~~~~~r~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~  146 (504)
                      .++.+||..+..+.   .. ..+..|+.++|++.++++|+++|+...+          +|        +.++++||+|+.
T Consensus        41 ~~~~~~~~~~~~~~---~~-~~~~~~l~~~l~~~~~~~p~~~Al~~~~----------~g--------~~~~~~Ty~el~   98 (746)
T PTZ00342         41 NESSVYCMKDHKKK---SS-LYVYKHIMKLLLEKYKLNNNKIAIVEHS----------CG--------EPQNYITYGNFF   98 (746)
T ss_pred             CCCCceecCchhhc---cc-ccccchHHHHHHHHHhhcCCceeEeccC----------CC--------CCceeeeHHHHH
Confidence            35779998887776   22 4567899999999999999999996321          01        135789999999


Q ss_pred             HHHHHHHHHHHh---CCCCCC-----------CeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccc
Q psy6874         147 DEAEAFGKGLRS---LGQEPR-----------HNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEV  212 (504)
Q Consensus       147 ~~~~~la~~L~~---~Gv~~g-----------d~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~  212 (504)
                      ++++++|++|.+   +|+++|           |+|+|+++|++||+++++||+++|+++||+|++++++++.++|+++++
T Consensus        99 ~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~  178 (746)
T PTZ00342         99 KKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKL  178 (746)
T ss_pred             HHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCC
Confidence            999999999997   499998           999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcc------------------cc-c----------------------
Q psy6874         213 NIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTST------------------DT-T----------------------  251 (504)
Q Consensus       213 ~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~------------------~~-~----------------------  251 (504)
                      ++||++.+..+.+.++....|.++.+|+++......                  .. .                      
T Consensus       179 ~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (746)
T PTZ00342        179 EWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPL  258 (746)
T ss_pred             CEEEEcHHHHHHHHHhhccCCCceEEEEECCCCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999998888777777777788899999886531100                  00 0                      


Q ss_pred             ----------------ccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHh
Q psy6874         252 ----------------NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKA  315 (504)
Q Consensus       252 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~  315 (504)
                                      ....+..+..|+++.+....   ..+..+..++|+++|+|||||||.||||++||+|+++++..
T Consensus       259 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~  335 (746)
T PTZ00342        259 EYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTT---NYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVP  335 (746)
T ss_pred             ccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhccc---CCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHH
Confidence                            00012233445554433211   12223456799999999999999999999999999998876


Q ss_pred             hhhcc--CCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHH
Q psy6874         316 FSDAV--HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDR  393 (504)
Q Consensus       316 ~~~~~--~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~  393 (504)
                      .....  ...+.|++++++|++|++++...+.+++.|+++++.+.. ...        .++++++++||++++||++|++
T Consensus       336 ~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~-~~~--------l~~di~~~~pT~~~~VP~v~~~  406 (746)
T PTZ00342        336 LCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKD-INY--------FSKDIYNSKGNILAGVPKVFNR  406 (746)
T ss_pred             HhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCC-HHH--------HHHHHHHhCCcEEEchHHHHHH
Confidence            54322  234568999999999999998888899999999986531 111        1336899999999999999999


Q ss_pred             HHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHH--hHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh
Q psy6874         394 IYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKV--VFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL  471 (504)
Q Consensus       394 l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~--~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~  471 (504)
                      |++.+++++.+.+.+++.+|++++..+.... .+..+++++++  +|+++++.+|++||.+++||+|+++++.++++.++
T Consensus       407 i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~  485 (746)
T PTZ00342        407 IYTNIMTEINNLPPLKRFLVKKILSLRKSNN-NGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLL  485 (746)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhh-cCCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhc
Confidence            9999999999999999999999999988753 45566777776  79999999999999999999999999999999989


Q ss_pred             CCceeeeccccccccceeecccCCCCCccCCCC
Q psy6874         472 CEKVIQGYGLTETTSCATVMHLNDMGNINSNGL  504 (504)
Q Consensus       472 ~~~v~~~YG~TEt~~~~~~~~~~d~~~~~s~G~  504 (504)
                      |++++|+||+||+++.+++....+ ...+++|.
T Consensus       486 g~~i~~gYGlTEt~~~~~~~~~~~-~~~gsvG~  517 (746)
T PTZ00342        486 NVNYYQGYGLTETTGPIFVQHADD-NNTESIGG  517 (746)
T ss_pred             CCCEEEeeccCcccceeeeccCCC-CCcccccC
Confidence            999999999999988777776655 34566763

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=1e-54  Score=449.54  Aligned_cols=377  Identities=33%  Similarity=0.523  Sum_probs=296.3

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..++..++.+.++.+|+..++.+.                   ..+.++.+||+|+.+++.++|++|+++|+.+||+|+|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~a~~~~-------------------~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai   75 (613)
T COG1022          15 IHTLPKRLAERVKDRPDGVALMYK-------------------ELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAI   75 (613)
T ss_pred             cccHHHHHHHHhhcCCcceeEeee-------------------cCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            457888899999999997777543                   3577899999999999999999999999977999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch-hHHHHHhhcCCCceEEEEEcCCCC--
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL-PKFRNILKLTPRVSTLIYMEDQLT--  246 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~-~~~~~~~~~~~~l~~ii~~~~~~~--  246 (504)
                      ++.||+||+++.+||+.+|++.||++++.+++++.++|+++++++++++.+.. +.+..+...++.+...+...+...  
T Consensus        76 ~a~nr~eW~i~d~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (613)
T COG1022          76 FAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREA  155 (613)
T ss_pred             EeCCCHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhc
Confidence            99999999999999999999999999999999999999999999999998543 444444443332222221111000  


Q ss_pred             ----cccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccC-
Q psy6874         247 ----STDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVH-  321 (504)
Q Consensus       247 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~-  321 (504)
                          ...+...+ ......+ .+.....    .....+..++|+|.|+|||||||.|||||+||+|+++++..+..... 
T Consensus       156 ~~~~~~~~~~~~-~~~~~~~-~~~~~~~----~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~  229 (613)
T COG1022         156 VEAKALVLEVFP-DEGISLF-LIDSAGL----EGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPP  229 (613)
T ss_pred             cchhhccccccc-cccchhh-hhccccc----ccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCC
Confidence                00000000 0011111 1111111    22235678999999999999999999999999999999999999986 


Q ss_pred             CCCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEc-CccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHH
Q psy6874         322 IEPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYS-TPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVH  399 (504)
Q Consensus       322 ~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~-~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~  399 (504)
                      ++++|+++++|||+|++++.. ....++.|+++.+. ++.++           ++|+++++||+|++||++|+.+.+.++
T Consensus       230 ~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~~~~~~~-----------~~dl~~~rPt~m~~VPRvwE~i~~~I~  298 (613)
T COG1022         230 IGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTL-----------LEDLKEVRPTVMIGVPRVWEKVYKGIM  298 (613)
T ss_pred             CCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEecCCHHHH-----------HHHHHHhCCeEEeechHHHHHHHHHHH
Confidence            999999999999999999986 44555556655543 33333           447899999999999999999999999


Q ss_pred             HHHhccChHHHHHHHHHHHHHHHH----HhcCC---CcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhC
Q psy6874         400 EKVSRASPFKRALFAFAFEYKRKW----AKRGF---RCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLC  472 (504)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~k~~~----~~~~~---~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~  472 (504)
                      +++.+.+..++.+|++++..+...    ...+.   ..-..|+++|+++++.+|+++|.+++||+||++++..+++.. |
T Consensus       299 ~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-G  377 (613)
T COG1022         299 EKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-G  377 (613)
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-C
Confidence            999999999999999999765432    22221   222468999999999999999999999999999999999985 8


Q ss_pred             CceeeeccccccccceeecccCCCCCccCCCC
Q psy6874         473 EKVIQGYGLTETTSCATVMHLNDMGNINSNGL  504 (504)
Q Consensus       473 ~~v~~~YG~TEt~~~~~~~~~~d~~~~~s~G~  504 (504)
                      +++.+|||||||+++++++++++ ...+++|.
T Consensus       378 i~i~eGYGlTEts~~~~v~~~~~-~~~gtvG~  408 (613)
T COG1022         378 IPILEGYGLTETSAVVSVNPPDR-FVLGTVGK  408 (613)
T ss_pred             CCeEEEecccccccceEEccccC-cccCCcCC
Confidence            99999999999999999998776 45567774

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.3e-53  Score=461.79  Aligned_cols=464  Identities=30%  Similarity=0.472  Sum_probs=355.0

Q ss_pred             HHHHHhhhhhccccccceehccCchhhhhccccceeeeccCCCCCceeecCCCCCC----CccccccCCCCcHHHHHHHH
Q psy6874          25 EALKAIAFVCDIITYPVYLFLQRPWEKKSLSSKKKAEIISKDNKSVTIRSISGPQE----NHIRLIRDGVDTMEKVLRYV  100 (504)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~~~~~~~~tl~~~~~~~  100 (504)
                      ..++.+.+++++.++++|+-+.+++....+.....  -...++.+.+||.....+.    +...  +++..|+.++|++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~t~~~~~~~~   78 (700)
T PTZ00216          3 GCVVSLMDKRNSRSEVPDPDIEEYRRYGPQNVPVP--GTETENASAIYRIAGVTDEEHERLRNE--WYYGPNFLQRLERI   78 (700)
T ss_pred             hHHHHHHHHhhcceeccchHhhhhhhcCCcceecC--CCCCCCCCCcccCcccccchhcccccc--cCCCCCHHHHHHHH
Confidence            46678889999999999986665443222222111  1123344566776443321    1111  34677999999999


Q ss_pred             HHhCCCCcccceecchhcccccC--CCC--cceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHH
Q psy6874         101 VTRFSDQRCLGTRQILAEEDEKQ--PNG--RIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAE  176 (504)
Q Consensus       101 ~~~~p~~~al~~~~~~~~~~~~~--~~g--~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e  176 (504)
                      ++++||++|+++|+.....++..  .+|  +.+.....++++++||+|+.++++++|++|.++|+++||+|+|+++|++|
T Consensus        79 ~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e  158 (700)
T PTZ00216         79 CKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWE  158 (700)
T ss_pred             HHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHH
Confidence            99999999999875422222111  122  12333345678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhc--CCCceEEEEEcCCCCcccccccC
Q psy6874         177 WMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKL--TPRVSTLIYMEDQLTSTDTTNFK  254 (504)
Q Consensus       177 ~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~~l~~ii~~~~~~~~~~~~~~~  254 (504)
                      |+++++||+++|++++|+|++++++++.+++++++++++|++.+..+.+......  .+.. .+|.++.....    ...
T Consensus       159 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~-~ii~~~~~~~~----~~~  233 (700)
T PTZ00216        159 WLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNT-TIIYLDSLPAS----VDT  233 (700)
T ss_pred             HHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCce-EEEEECCCccc----ccc
Confidence            9999999999999999999999999999999999999999987655544433322  2333 45655542100    112


Q ss_pred             CCceeeehhHHHhcccccCC-CCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhcc-----CCCCCcEE
Q psy6874         255 QGIEIVPFKQIVKRGSESGS-RYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV-----HIEPNDVF  328 (504)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~  328 (504)
                      .+..+.+|+++.+.+..... .....+..++|+++|+|||||||.||||++||+|+++++.+....+     .+.++|++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~  313 (700)
T PTZ00216        234 EGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETY  313 (700)
T ss_pred             CCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEE
Confidence            34567889998776521110 1122345689999999999999999999999999999887765443     24789999


Q ss_pred             EEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChH
Q psy6874         329 LGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPF  408 (504)
Q Consensus       329 l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~  408 (504)
                      ++++|++|++++.....++..|+++++.++..+.+....    ...+++.++||++.++|++++++.+.+...+...+.+
T Consensus       314 ls~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~l~~~~~~----~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~  389 (700)
T PTZ00216        314 CSYLPLAHIMEFGVTNIFLARGALIGFGSPRTLTDTFAR----PHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSL  389 (700)
T ss_pred             EEEChHHHHHHHHHHHHHHHcCCEEEECCHHHhhhhhcc----ccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHH
Confidence            999999999998876677888998888655444432111    1236889999999999999999999998888888999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccce
Q psy6874         409 KRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCA  488 (504)
Q Consensus       409 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~  488 (504)
                      ++.+|++++..++....++.++|++++++|++.+..+|+++|.+++||+|+++++.++++.+++ +++++||+||+++.+
T Consensus       390 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~  468 (700)
T PTZ00216        390 KRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCG  468 (700)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccc
Confidence            9999999999999988888889999999999999999999999999999999999999998888 999999999998777


Q ss_pred             eecccCCCCCccCCC
Q psy6874         489 TVMHLNDMGNINSNG  503 (504)
Q Consensus       489 ~~~~~~d~~~~~s~G  503 (504)
                      ++....+ ...+++|
T Consensus       469 ~~~~~~~-~~~~svG  482 (700)
T PTZ00216        469 GIQRTGD-LEPNAVG  482 (700)
T ss_pred             cccCCCC-CCCCCcC
Confidence            7665544 3445666

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=7.6e-53  Score=455.37  Aligned_cols=410  Identities=30%  Similarity=0.571  Sum_probs=328.6

Q ss_pred             CCceeecCCCCCCCccccccCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHH
Q psy6874          68 KSVTIRSISGPQENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVND  147 (504)
Q Consensus        68 ~~~~~r~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~  147 (504)
                      ++.+||+....+....  ..++..|+.++|++.++++|+++|++++...        ++      ..++++|+||+|+.+
T Consensus        21 ~~~~~~~~~~~~~~~~--~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~--------~~------~~~~~~~~Ty~el~~   84 (660)
T PLN02430         21 VGPVYRNLLSKKGFPP--IDSDITTAWDIFSKSVEKYPDNKMLGWRRIV--------DG------KVGPYMWKTYKEVYE   84 (660)
T ss_pred             CCCccccccccccccC--CCCCCCCHHHHHHHHHHhCCCCceEEEEecC--------CC------CCCCcEEEEHHHHHH
Confidence            4567888765544422  2567889999999999999999999865311        01      124678899999999


Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch-hHHH
Q psy6874         148 EAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL-PKFR  226 (504)
Q Consensus       148 ~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~-~~~~  226 (504)
                      +++++|++|.++|+++||+|+|+++|++||+++++||+++|++++|++++++++++.+++++++++++|++++.. ..+.
T Consensus        85 ~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~  164 (660)
T PLN02430         85 EVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLE  164 (660)
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999987532 3333


Q ss_pred             HHhhcCCCceEEEEEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecH
Q psy6874         227 NILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTH  306 (504)
Q Consensus       227 ~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th  306 (504)
                      ......+.++.+|.++.............+....+|+++...+...  .....+..++|+++|+|||||||.||||++||
T Consensus       165 ~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth  242 (660)
T PLN02430        165 PDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKEN--PSETNPPKPLDICTIMYTSGTSGDPKGVVLTH  242 (660)
T ss_pred             hhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccC--CCCCCCcCcCceEEEEECCCCCCCCCEEEeec
Confidence            3333356678888876431100000011234567899887665432  12223346799999999999999999999999


Q ss_pred             HHHHHHHHhhhhc-----cCCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCC
Q psy6874         307 DNMISTLKAFSDA-----VHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHP  381 (504)
Q Consensus       307 ~~l~~~~~~~~~~-----~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~  381 (504)
                      +|+..++......     ..+.++|++++++|++|+++....+.++..|+++++.... ...        .++++++++|
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~-~~~--------l~~~l~~~~p  313 (660)
T PLN02430        243 EAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGD-LNA--------LRDDLMELKP  313 (660)
T ss_pred             HHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCC-hhh--------HHHHHHHhCC
Confidence            9999887765322     1567899999999999999998767788999999886431 111        1346889999


Q ss_pred             cEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCC----CcchhhHHhHHHHHHhcCCcEEEEEEccC
Q psy6874         382 TALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGF----RCPLIDKVVFGQTKKLLGGRVRLILSGGA  457 (504)
Q Consensus       382 T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~----~~~~~~~~~~~~~~~~~g~~lr~i~~gG~  457 (504)
                      |++.++|.+++++++.+.+.+...+++++.+|++++.+|+.+...+.    .++++|.++|+++++.+|+++|.+++||+
T Consensus       314 t~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga  393 (660)
T PLN02430        314 TLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGA  393 (660)
T ss_pred             cEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCC
Confidence            99999999999999999999988899999999999999999887664    36788999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHhCCceeeeccccccccceeecccCCCCCccCCCC
Q psy6874         458 PLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNGL  504 (504)
Q Consensus       458 ~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~~~~~~d~~~~~s~G~  504 (504)
                      |+++++.++++...+++++++||+||+++.+++..+.+....+++|.
T Consensus       394 ~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~  440 (660)
T PLN02430        394 PLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGA  440 (660)
T ss_pred             CCCHHHHHHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccC
Confidence            99999988888765678999999999988777776665555677773

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=2.7e-52  Score=451.79  Aligned_cols=408  Identities=31%  Similarity=0.544  Sum_probs=322.5

Q ss_pred             CCceeecCCCCCCCccccccCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHH
Q psy6874          68 KSVTIRSISGPQENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVND  147 (504)
Q Consensus        68 ~~~~~r~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~  147 (504)
                      ++.+||+....+.+...  .++..|+.++|++.++++|+++|++.+...        ++      ..++++++||+|+.+
T Consensus        22 ~~~~~~~~~~~~~~~~~--~~~~~t~~~~l~~~~~~~p~~~al~~~~~~--------~~------~~g~~~~~Ty~el~~   85 (660)
T PLN02861         22 AGPVYRSIYAKDGLLDL--PADIDSPWQFFSDAVKKYPNNQMLGRRQVT--------DS------KVGPYVWLTYKEVYD   85 (660)
T ss_pred             CCCcccccccccccccC--CCCCCCHHHHHHHHHHhCCCCCeEEEEecC--------CC------CCCCceEEEHHHHHH
Confidence            35668887665554432  467789999999999999999999765210        00      125567899999999


Q ss_pred             HHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHH
Q psy6874         148 EAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRN  227 (504)
Q Consensus       148 ~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~  227 (504)
                      +++++|++|.++|+++||+|+|+++|++||+++++||+++|++++|++++++.+++.++|++++++++|++.+..+.+..
T Consensus        86 ~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~  165 (660)
T PLN02861         86 AAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILS  165 (660)
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998776555554


Q ss_pred             HhhcCC-CceEEEEEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecH
Q psy6874         228 ILKLTP-RVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTH  306 (504)
Q Consensus       228 ~~~~~~-~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th  306 (504)
                      .....+ .++.++.++.............+....+|+++.+.+...   ....+..++|+++|+|||||||.||||++||
T Consensus       166 ~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth  242 (660)
T PLN02861        166 CLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLD---CELPPKQKTDICTIMYTSGTTGEPKGVILTN  242 (660)
T ss_pred             hhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCccc---CCCCccCCCceEEEEecCCCCCCCCEEEEec
Confidence            444443 577888775431000000001234456788876544321   1122346799999999999999999999999


Q ss_pred             HHHHHHHHhhhhccC-----CCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCC
Q psy6874         307 DNMISTLKAFSDAVH-----IEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHP  381 (504)
Q Consensus       307 ~~l~~~~~~~~~~~~-----~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~  381 (504)
                      .|+++++......+.     +.++|++++++|++|++++...+.+++.|+++++...    +...     .++++++++|
T Consensus       243 ~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~----~~~~-----~~~~i~~~~~  313 (660)
T PLN02861        243 RAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQG----DIRY-----LMEDVQALKP  313 (660)
T ss_pred             HHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCC----CHHH-----HHHHHHHhCC
Confidence            999988776655433     4789999999999999998876678999999988632    1111     1346899999


Q ss_pred             cEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCC----CcchhhHHhHHHHHHhcCCcEEEEEEccC
Q psy6874         382 TALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGF----RCPLIDKVVFGQTKKLLGGRVRLILSGGA  457 (504)
Q Consensus       382 T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~----~~~~~~~~~~~~~~~~~g~~lr~i~~gG~  457 (504)
                      |++++||+++.++++.+..++...+.+++.+|++++.+++.+...+.    ..+.+++++|+++++.+|+++|.+++||+
T Consensus       314 T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Gga  393 (660)
T PLN02861        314 TIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAA  393 (660)
T ss_pred             cEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCC
Confidence            99999999999999999999999999999999999999998876653    25778999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHhC-CceeeeccccccccceeecccCCCCCccCCCC
Q psy6874         458 PLSPDTHELIKVCLC-EKVIQGYGLTETTSCATVMHLNDMGNINSNGL  504 (504)
Q Consensus       458 ~l~~~~~~~~~~~~~-~~v~~~YG~TEt~~~~~~~~~~d~~~~~s~G~  504 (504)
                      |+++++.++++. ++ .+++|+||+||+++.++....++....+++|.
T Consensus       394 pl~~~~~~~~~~-~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~  440 (660)
T PLN02861        394 PLPRHVEEFLRV-TSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGV  440 (660)
T ss_pred             CCCHHHHHHHHH-HcCCCeeEecchhhhhhceeecccccCCCCCCccC
Confidence            999998776654 55 47999999999987666554444444567773

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1.3e-51  Score=446.89  Aligned_cols=412  Identities=33%  Similarity=0.568  Sum_probs=334.9

Q ss_pred             CCCCceeecCCCCCCCcccc-ccCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHH
Q psy6874          66 DNKSVTIRSISGPQENHIRL-IRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQ  144 (504)
Q Consensus        66 ~~~~~~~r~~~~~~~~~~~~-~~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~e  144 (504)
                      +.++.+||+...+.++.... ..+...|+.++|+++++++|+++|++.+..        .++      ..++++++||+|
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~--------~~~------~~~~~~~lTy~e   83 (651)
T PLN02736         18 TGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIR--------VDG------TVGEYKWMTYGE   83 (651)
T ss_pred             CCCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEec--------CCC------CCCCcEEEEHHH
Confidence            33467788876665443321 245677999999999999999999975410        011      113567899999


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhH
Q psy6874         145 VNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPK  224 (504)
Q Consensus       145 l~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~  224 (504)
                      +.++++++|++|+++|+++||+|+|+++|++||+++++||+++|++++|+++.++++++.+++++++++++|++.+..+.
T Consensus        84 l~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~  163 (651)
T PLN02736         84 AGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNT  163 (651)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887777


Q ss_pred             HHHHhhcCCCceEEEEEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEe
Q psy6874         225 FRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVL  304 (504)
Q Consensus       225 ~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~  304 (504)
                      +..+....+.++.++.++.............+.....|+++.+.....  ..+.....++|+++|+|||||||.||||++
T Consensus       164 ~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~dd~a~IlyTSGTTG~PKGV~l  241 (651)
T PLN02736        164 LLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSS--PQPFRPPKPEDVATICYTSGTTGTPKGVVL  241 (651)
T ss_pred             HHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccC--CCCCCCCCccceEEEEEcCCCCCCCcEEEE
Confidence            777666778888888775321000000011234567888887654322  122234568999999999999999999999


Q ss_pred             cHHHHHHHHHhhhhccCCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEE
Q psy6874         305 THDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTAL  384 (504)
Q Consensus       305 th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~  384 (504)
                      ||+|+++++......+++.++|++++++|++|++++...+.+++.|+++++.+..    ...     .++++++++||++
T Consensus       242 sh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~----~~~-----~~~~i~~~~~t~~  312 (651)
T PLN02736        242 THGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGD----NLK-----LMDDLAALRPTIF  312 (651)
T ss_pred             ecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCC----HHH-----HHHHHHHhCCcEE
Confidence            9999999998888888899999999999999999998888899999999887531    111     1346899999999


Q ss_pred             EeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCC-CcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHH
Q psy6874         385 TAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGF-RCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDT  463 (504)
Q Consensus       385 ~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~  463 (504)
                      +++|+++.++.+.+...+...+.+++.+|++++..+...+..+. ..+.+++++|++++..+|+++|.+++||+++++++
T Consensus       313 ~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~  392 (651)
T PLN02736        313 CSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDV  392 (651)
T ss_pred             ecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHH
Confidence            99999999999999888999999999999999988877666654 34678888999999999999999999999999999


Q ss_pred             HHHHHHHhCCceeeeccccccccceeecccCCCCCccCCC
Q psy6874         464 HELIKVCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNG  503 (504)
Q Consensus       464 ~~~~~~~~~~~v~~~YG~TEt~~~~~~~~~~d~~~~~s~G  503 (504)
                      .++++..+|++++++||+||+++.++.....+ ...+++|
T Consensus       393 ~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~-~~~~~vG  431 (651)
T PLN02736        393 MEFLRICFGGRVLEGYGMTETSCVISGMDEGD-NLSGHVG  431 (651)
T ss_pred             HHHHHHHhCCCeEEEechHHhchheeccCCCC-CCCCccC
Confidence            99999889999999999999987776665544 3445666

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=2.1e-51  Score=444.54  Aligned_cols=409  Identities=32%  Similarity=0.550  Sum_probs=313.7

Q ss_pred             CceeecCCCCCCCccccccCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHH
Q psy6874          69 SVTIRSISGPQENHIRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDE  148 (504)
Q Consensus        69 ~~~~r~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~  148 (504)
                      +.+||+......+.. . .++..|+.++|++.++++||++|+++++..        ++      ..++++++||+|+.++
T Consensus        25 ~~~~~~~~~~~~~~~-~-~~~~~t~~~~l~~~a~~~pd~~al~~~~~~--------~~------~~~~~~~~Ty~el~~~   88 (666)
T PLN02614         25 GPVYRSIFAKDGFPN-P-IEGMDSCWDVFRMSVEKYPNNPMLGRREIV--------DG------KPGKYVWQTYQEVYDI   88 (666)
T ss_pred             CCcccCcccccccCC-C-CCCCCcHHHHHHHHHHhCCCCCeEEEeccc--------CC------CCCCcEEeEHHHHHHH
Confidence            555776654444332 1 456679999999999999999999754310        00      1134678999999999


Q ss_pred             HHHHHHHHHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHH
Q psy6874         149 AEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNI  228 (504)
Q Consensus       149 ~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~  228 (504)
                      ++++|++|+++|+++||+|+|+++|++||+++++||+++|++++|+|+.++++++.+++++++++++|++.+..+.+...
T Consensus        89 v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~  168 (666)
T PLN02614         89 VIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKT  168 (666)
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987654443322


Q ss_pred             hh-cCCCceEEEEEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHH
Q psy6874         229 LK-LTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHD  307 (504)
Q Consensus       229 ~~-~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~  307 (504)
                      .. ..+.++.++.++.............+..+.+++++.+.+...  ..+.....++|+++|+|||||||.||||++||+
T Consensus       169 ~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~  246 (666)
T PLN02614        169 CPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGK--QYDLPIKKKSDICTIMYTSGTTGDPKGVMISNE  246 (666)
T ss_pred             cccccccceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccC--CCCCCCCCCCceEEEEEcCCCCCCCcEEEEecH
Confidence            11 122366777765321000000001234467788877644321  111223467999999999999999999999999


Q ss_pred             HHHHHHHhhhhcc-----CCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCc
Q psy6874         308 NMISTLKAFSDAV-----HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPT  382 (504)
Q Consensus       308 ~l~~~~~~~~~~~-----~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T  382 (504)
                      |+++.+......+     .+.++|++++++|++|++++.....+++.|+++++.+.    +...     .++++++++||
T Consensus       247 nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~----~~~~-----~~~~i~~~~~T  317 (666)
T PLN02614        247 SIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRG----DVKL-----LIEDLGELKPT  317 (666)
T ss_pred             HHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCC----CHHH-----HHHHHHHhCCe
Confidence            9998877654433     57889999999999999998766677889999988642    1111     13468999999


Q ss_pred             EEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCC----CcchhhHHhHHHHHHhcCCcEEEEEEccCC
Q psy6874         383 ALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGF----RCPLIDKVVFGQTKKLLGGRVRLILSGGAP  458 (504)
Q Consensus       383 ~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~----~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~  458 (504)
                      ++++||++++++++.+...+...+.+++.+|+++++++......+.    .+++.++++|+++++.+|++||.+++||+|
T Consensus       318 ~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~  397 (666)
T PLN02614        318 IFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAP  397 (666)
T ss_pred             EEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCC
Confidence            9999999999999988888888888899999999998877665543    356788899999999999999999999999


Q ss_pred             CCHHHHHHHHHHhCCceeeeccccccccceeecccCCCCCccCCCC
Q psy6874         459 LSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNGL  504 (504)
Q Consensus       459 l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~~~~~~d~~~~~s~G~  504 (504)
                      +++++.++++...+++++++||+||+++.+++..+++....+++|.
T Consensus       398 l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~  443 (666)
T PLN02614        398 LASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGP  443 (666)
T ss_pred             CCHHHHHHHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccC
Confidence            9998766655543689999999999987665555544445567773

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=7.7e-47  Score=424.48  Aligned_cols=367  Identities=19%  Similarity=0.252  Sum_probs=297.9

Q ss_pred             cCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy6874          87 RDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHN  166 (504)
Q Consensus        87 ~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~  166 (504)
                      .++..|+.++|++.++++|+++|++.+.                  ..++++++||+|+.++++++|++|.++|+++||+
T Consensus       423 ~~~~~Tl~dll~~~a~~~pd~~al~~~~------------------~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDr  484 (1452)
T PTZ00297        423 LAGVRSLGEMWERSVTRHSTFRCLGQTS------------------ESGESEWLTYGTVDARARELGSGLLALGVRPGDV  484 (1452)
T ss_pred             cccCCCHHHHHHHHHHHCCCCeEEEEec------------------cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence            3456799999999999999999996431                  1255689999999999999999999999999999


Q ss_pred             EEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCC
Q psy6874         167 VVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLT  246 (504)
Q Consensus       167 Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~  246 (504)
                      |+|+++|++||+++.+||+++|++.+|++++  .+++.+++++++++++|++.+.++++.++..  +.+++||+++....
T Consensus       485 VaIls~N~~Ewvia~lA~~~~GaV~VPly~t--~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~--~~Lr~IIv~d~~~~  560 (1452)
T PTZ00297        485 IGVDCEASRNIVILEVACALYGFTTLPLVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRS--RKLETVVYTHSFYD  560 (1452)
T ss_pred             EEEEcCCCHHHHHHHHHHHHcCCEEEeCCCC--HHHHHHHHHhcCCcEEEEchhHHHHHHhhcc--cCCcEEEEECCCcc
Confidence            9999999999999999999999999999864  6799999999999999999887777665432  47899999864210


Q ss_pred             ccc-ccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEe---cCCCCCCcceEEecHHHHHHHHHhhhhcc--
Q psy6874         247 STD-TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMY---TSGSTGTPKGVVLTHDNMISTLKAFSDAV--  320 (504)
Q Consensus       247 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~y---TSGTTG~PKgV~~th~~l~~~~~~~~~~~--  320 (504)
                      ..+ ......++.+++|+++++.+.... ........++|++.|+|   ||||||.||||++||+|+++++.......  
T Consensus       561 ~~~~~~~~~~~i~~~s~~~ll~~G~~~~-~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~  639 (1452)
T PTZ00297        561 EDDHAVARDLNITLIPYEFVEQKGRLCP-VPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVL  639 (1452)
T ss_pred             cccccccccCCcceeeHHHHHhcCcccC-ccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccc
Confidence            000 000112456788999988764321 11223346789999996   99999999999999999999998865432  


Q ss_pred             -CCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHH
Q psy6874         321 -HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVH  399 (504)
Q Consensus       321 -~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~  399 (504)
                       ...++|++++++||+|+++....+.+++.|+++++.++.++.           +++++++||++++||++|+++++.+.
T Consensus       640 ~~~~~~D~~Ls~LPLaHI~er~~~~~~l~~G~~I~~~d~~~ll-----------edL~~~rPTv~~~VPrv~ekI~~~i~  708 (1452)
T PTZ00297        640 PSSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAVATVDAAHLQ-----------RAFVKFQPTILVAAPSLFSTSRLQLS  708 (1452)
T ss_pred             cCCCCCCEEEEechHHHHHHHHHHHHHHHcCCEEEeCCHHHHH-----------HHHHHHCCEEEEecHHHHHHHHHHHH
Confidence             456789999999999999987788889999999876544333           36899999999999999999999999


Q ss_pred             HHHhccChHHHHHHHHHHHHHHHHHhcC-CCcchhhHHhHHHHHHhcCCcEEEEEEccC--CCCHHHHHHHHHHhCCcee
Q psy6874         400 EKVSRASPFKRALFAFAFEYKRKWAKRG-FRCPLIDKVVFGQTKKLLGGRVRLILSGGA--PLSPDTHELIKVCLCEKVI  476 (504)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~--~l~~~~~~~~~~~~~~~v~  476 (504)
                      +++...+++++++|++++++|......+ ..++++|+++|+++++.+|+++|.+++||+  +++..+..      +++++
T Consensus       709 ~~~~~~~~~~~~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------~i~i~  782 (1452)
T PTZ00297        709 RANERYSAVYSWLFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------HISVC  782 (1452)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------CceEE
Confidence            9998889999999999999988765544 456799999999999999999999999984  56654443      56788


Q ss_pred             eeccccccccceeecccCCC
Q psy6874         477 QGYGLTETTSCATVMHLNDM  496 (504)
Q Consensus       477 ~~YG~TEt~~~~~~~~~~d~  496 (504)
                      .+||+||+   ++++.+++.
T Consensus       783 ~g~glTE~---~~~~~~~~~  799 (1452)
T PTZ00297        783 YVPCLREV---FFLPSEGVF  799 (1452)
T ss_pred             EecceEEe---eeecCCCCc
Confidence            89999994   355665554

>KOG1177|consensus

Probab=100.00  E-value=2.9e-44  Score=345.45  Aligned_cols=337  Identities=21%  Similarity=0.308  Sum_probs=274.8

Q ss_pred             CCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEE
Q psy6874          89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVV  168 (504)
Q Consensus        89 ~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Va  168 (504)
                      ...|+.+.++-.+++.||+.++++.                     .+..++||+|+.+.++.+|++|.++|+++||+|+
T Consensus        48 ~~~Tigq~l~~~t~~v~dkea~Vf~---------------------~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVg  106 (596)
T KOG1177|consen   48 DSETIGQLLETTTERVPDKEAAVFD---------------------HEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVG  106 (596)
T ss_pred             ccccHHHHHHHHhhccCcceEEEEe---------------------eccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEE
Confidence            3568999999999999999999743                     2335699999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch-----hHHHHHh-------------h
Q psy6874         169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL-----PKFRNIL-------------K  230 (504)
Q Consensus       169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~-------------~  230 (504)
                      +..||+.+|+...+||+++|.+.+++||.+..+++++.|++.+++++|+.+.+.     +.+.++.             .
T Consensus       107 vwgpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~  186 (596)
T KOG1177|consen  107 VWGPNSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSE  186 (596)
T ss_pred             EecCChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCcccccc
Confidence            999999999999999999999999999999999999999999999999987543     2233332             2


Q ss_pred             cCCCceEEEEEcCCCCcccccccCCCceeeehhHHHhcccccCC---CCCCCCCCCCCEEEEEecCCCCCCcceEEecHH
Q psy6874         231 LTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGS---RYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHD  307 (504)
Q Consensus       231 ~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~  307 (504)
                      .+|.+.++|..+++  ++       -...+.++|++..+.....   ........|||++.|.|||||||.|||+.+||.
T Consensus       187 ~lp~lthvi~~~ed--~~-------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~  257 (596)
T KOG1177|consen  187 LLPELTHVILADED--HP-------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHY  257 (596)
T ss_pred             ccccceEEEecCCC--Cc-------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehh
Confidence            35677888887744  11       1244667777765544211   222334577999999999999999999999999


Q ss_pred             HHHHHHHhhhhccCCCCCcEEEEecChHHHHHHH-HHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEe
Q psy6874         308 NMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELL-SESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTA  386 (504)
Q Consensus       308 ~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~  386 (504)
                      |++++........+++.++++....||+|.+|.. ..+++|..|++++++++.....+       .+++|+++|+|.+++
T Consensus       258 ~~~Nna~~vg~r~g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~-------alqai~~ekcT~l~g  330 (596)
T KOG1177|consen  258 NFLNNARAVGARAGYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKD-------ALQAISNEKCTTLYG  330 (596)
T ss_pred             hhhhhHHHHHHHhCcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHH-------HHHHHHhhceEEEec
Confidence            9999999999999999999999999999999966 58899999999999766543222       245699999999999


Q ss_pred             ccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHH
Q psy6874         387 VPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHEL  466 (504)
Q Consensus       387 vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~  466 (504)
                      +|+++..+++..+.                                         .....+++|-++.||+|+|+++.+.
T Consensus       331 tPtM~~Dlln~~~~-----------------------------------------~~~~~s~lr~~vigGa~~s~eLlk~  369 (596)
T KOG1177|consen  331 TPTMFVDLLNIPQK-----------------------------------------QQVDLSSLRKGVIGGAPVSPELLKL  369 (596)
T ss_pred             ChHHHHHHhcchhh-----------------------------------------ccCchhhhhhheeCCCCCCHHHHHH
Confidence            99999999864221                                         1222378999999999999999999


Q ss_pred             HHHHhCC-ceeeeccccccccceeecccCCCCC--ccCCC
Q psy6874         467 IKVCLCE-KVIQGYGLTETTSCATVMHLNDMGN--INSNG  503 (504)
Q Consensus       467 ~~~~~~~-~v~~~YG~TEt~~~~~~~~~~d~~~--~~s~G  503 (504)
                      +...... .+..+||+|||+...++...+|...  ..|+|
T Consensus       370 iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG  409 (596)
T KOG1177|consen  370 IVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVG  409 (596)
T ss_pred             HHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhh
Confidence            9876654 3777999999999999988887643  34454

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=5.1e-43  Score=357.95  Aligned_cols=316  Identities=20%  Similarity=0.232  Sum_probs=246.0

Q ss_pred             HHHHHHH-hCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEcCC
Q psy6874          96 VLRYVVT-RFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRS-LGQEPRHNVVIFAET  173 (504)
Q Consensus        96 ~~~~~~~-~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gv~~gd~Vai~~~n  173 (504)
                      .++++.. ..+|+.|+++..                  +.+..+.+||+||.+.++++|+.|++ .|+ +||+|+|++||
T Consensus        14 ~~dr~~~~~~~~~~aii~~~------------------e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~   74 (528)
T COG0365          14 ALDRHLEADRPDDTAIIFDG------------------EDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPN   74 (528)
T ss_pred             hhhhhhhccCCCceEEEEEc------------------CCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCC
Confidence            4555554 347899997653                  11222789999999999999999987 678 99999999999


Q ss_pred             CHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcC---CCceEEEEEcCCCCcccc
Q psy6874         174 RAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLT---PRVSTLIYMEDQLTSTDT  250 (504)
Q Consensus       174 ~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~---~~l~~ii~~~~~~~~~~~  250 (504)
                      .+|.+++++||+++|++++|+.+.++++++.+.++++++++||++++...+.+.+....   ..+..++.++..      
T Consensus        75 ~pe~~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~------  148 (528)
T COG0365          75 SPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRL------  148 (528)
T ss_pred             CHHHHHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccc------
Confidence            99999999999999999999999999999999999999999999987654332211000   000013333322      


Q ss_pred             cccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhh-hccCCCCCcEEE
Q psy6874         251 TNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS-DAVHIEPNDVFL  329 (504)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~-~~~~~~~~d~~l  329 (504)
                             . ..|+++.+....   ..+..+.+.+|+++|+|||||||+||||+|+|+.+........ ..+.+.++|+++
T Consensus       149 -------~-~~~~~~~~~~~~---~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w  217 (528)
T COG0365         149 -------G-LWYDEAVEKASE---KFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFW  217 (528)
T ss_pred             -------c-ccHHHHhhccCC---CCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEE
Confidence                   1 667777765543   3334457889999999999999999999999997766655544 456777999999


Q ss_pred             EecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChH
Q psy6874         330 GYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPF  408 (504)
Q Consensus       330 ~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~  408 (504)
                      +..++.|+++.+. ++.+|.+|+++++.......+...     .++.++++++|++++.|+.+++|.+.-.         
T Consensus       218 ~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~-----~~~~ie~~~vt~~~tsPT~~R~l~~~g~---------  283 (528)
T COG0365         218 NSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPER-----LWEALEKYKVTIFGTSPTFLRRLMKLGL---------  283 (528)
T ss_pred             eCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHH-----HHHHHHHhCCceEeeCHHHHHHHHhcCC---------
Confidence            9999999999996 889999999999886554332211     1446899999999999999999977311         


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccce
Q psy6874         409 KRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCA  488 (504)
Q Consensus       409 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~  488 (504)
                                                      .++.++++||.+.+.|+||++++++++.+.+|++|.+.||+||+++..
T Consensus       284 --------------------------------~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~  331 (528)
T COG0365         284 --------------------------------GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGF  331 (528)
T ss_pred             --------------------------------cccccchhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccc
Confidence                                            122234799999999999999999999999999999999999998444


Q ss_pred             eeccc
Q psy6874         489 TVMHL  493 (504)
Q Consensus       489 ~~~~~  493 (504)
                      ....+
T Consensus       332 ~~~~~  336 (528)
T COG0365         332 IAGRP  336 (528)
T ss_pred             cCCCC
Confidence            44433

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=3.8e-42  Score=371.41  Aligned_cols=354  Identities=21%  Similarity=0.226  Sum_probs=272.1

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      +.|+.++|++.++++|+++|+.+....         +      ..+..+++||+||.++++++|+.|+++|+++||+|++
T Consensus        24 ~~t~~~~l~~~a~~~p~~~Al~~~~~~---------~------~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i   88 (632)
T PRK07529         24 PASTYELLSRAAARHPDAPALSFLLDA---------D------PLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAF   88 (632)
T ss_pred             CCCHHHHHHHHHHHCCCCceEEeeccc---------C------CCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            558999999999999999999753200         0      0123468999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCc-----hhHHHHHhhcCCCceEEEEEcCC
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDL-----LPKFRNILKLTPRVSTLIYMEDQ  244 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~l~~ii~~~~~  244 (504)
                      +++|++|++++++||+++| +++|+|+.++++++.+++++++++++|++...     .+++..+....+.++.++.++..
T Consensus        89 ~~~n~~e~~~~~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  167 (632)
T PRK07529         89 LLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLA  167 (632)
T ss_pred             ECCCCHHHHHHHHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCc
Confidence            9999999999999999999 57999999999999999999999999998643     34555556667778888777543


Q ss_pred             CCccccccc-------CCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhh
Q psy6874         245 LTSTDTTNF-------KQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS  317 (504)
Q Consensus       245 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~  317 (504)
                      .........       +.+..+..|.+.+....... ........++++++++|||||||.||||++||++++++.....
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~  246 (632)
T PRK07529        168 RYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDR-LFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGA  246 (632)
T ss_pred             ccccccccccccccccccccccCCHHHHHhcCCCcc-ccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHH
Confidence            100000000       02234556766655433211 1122334679999999999999999999999999999888777


Q ss_pred             hccCCCCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHH
Q psy6874         318 DAVHIEPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYK  396 (504)
Q Consensus       318 ~~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~  396 (504)
                      ..+.+.++|++++.+|++|++++.. .+.++..|+++++.++....+...  ....++.++++++|++.++|+++..+.+
T Consensus       247 ~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~--~~~~~~~i~~~~vt~~~~~P~~~~~l~~  324 (632)
T PRK07529        247 LLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGV--IANFWKIVERYRINFLSGVPTVYAALLQ  324 (632)
T ss_pred             HhcCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchH--HHHHHHHHHHhCCeEEEeHHHHHHHHHh
Confidence            7778899999999999999999874 778999999999987644332110  0112446889999999999999998865


Q ss_pred             HHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCcee
Q psy6874         397 GVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVI  476 (504)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~  476 (504)
                      ...                                          .....++||.+++||+++++++.+.++..+|++++
T Consensus       325 ~~~------------------------------------------~~~~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~  362 (632)
T PRK07529        325 VPV------------------------------------------DGHDISSLRYALCGAAPLPVEVFRRFEAATGVRIV  362 (632)
T ss_pred             Ccc------------------------------------------cCCCccceEEEEEcCCCCCHHHHHHHHHHhCCcEe
Confidence            210                                          00012689999999999999999999999999999


Q ss_pred             eeccccccccceeecccCCCCCccCCCC
Q psy6874         477 QGYGLTETTSCATVMHLNDMGNINSNGL  504 (504)
Q Consensus       477 ~~YG~TEt~~~~~~~~~~d~~~~~s~G~  504 (504)
                      ++||+||+++.++.+..+.....+++|.
T Consensus       363 ~~YG~TE~~~~~~~~~~~~~~~~~svG~  390 (632)
T PRK07529        363 EGYGLTEATCVSSVNPPDGERRIGSVGL  390 (632)
T ss_pred             eeecccccCcccccCCccccccCCCccc
Confidence            9999999987766655443345566663

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.8e-42  Score=364.59  Aligned_cols=334  Identities=26%  Similarity=0.416  Sum_probs=260.2

Q ss_pred             CCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEE
Q psy6874          89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVV  168 (504)
Q Consensus        89 ~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Va  168 (504)
                      ...++.+++++.++.+|+++|+.+.+                    .. ..+||+||.++++++|+.|++.|+++||+|+
T Consensus         9 ~~~~~~~~l~~~a~~~~~~~a~~~~~--------------------~~-~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVa   67 (534)
T COG0318           9 AELTLASLLERAARRNPDRPALIFLG--------------------RG-GRLTYRELDRRANRLAAALQALGVKPGDRVA   67 (534)
T ss_pred             ccccHHHHHHHHHHhCCCceEEEEcC--------------------CC-ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            45689999999999999999997532                    11 1599999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcc
Q psy6874         169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTST  248 (504)
Q Consensus       169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~  248 (504)
                      |+++|+++++++++||+++|++++|+|+.++++++.++++++++++++++.+..+.+..+....+....+......  . 
T Consensus        68 il~~N~~e~~~~~~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-  144 (534)
T COG0318          68 ILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDA--D-  144 (534)
T ss_pred             EECCCCHHHHHHHHHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccc--c-
Confidence            9999999999999999999999999999999999999999999999999988555555544433333222222221  0 


Q ss_pred             cccccCCCcee-eehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccC--CCCC
Q psy6874         249 DTTNFKQGIEI-VPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVH--IEPN  325 (504)
Q Consensus       249 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~--~~~~  325 (504)
                              ... ..+++........  ........++|+++|+|||||||.||||++||+|++.+.......+.  ++++
T Consensus       145 --------~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~  214 (534)
T COG0318         145 --------DRLPITLEALAAEGPGP--DADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPD  214 (534)
T ss_pred             --------ccccccHHHHhhccCCc--ccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCC
Confidence                    000 2455553322211  11112267899999999999999999999999999999998888887  8999


Q ss_pred             cEEEEecChHHHHHHHHHH-HHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhc
Q psy6874         326 DVFLGYLPLAHVFELLSES-VCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSR  404 (504)
Q Consensus       326 d~~l~~lPl~h~~~~~~~~-~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~  404 (504)
                      |++++++|++|++|+...+ ..++.|+++++.++..+.. ...     +..+.++++|++.++|+++.++.++....-  
T Consensus       215 d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~-~~~-----~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~--  286 (534)
T COG0318         215 DVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDP-EEV-----LWLIEKYKVTVLSGVPTFLRELLDNPEKDD--  286 (534)
T ss_pred             ceEEEecChHHHHHHHHHHHHHHHcCCEEEeCCCCCcCH-HHH-----HHHHHHhcceEEecchHHHHHHHhCCccCc--
Confidence            9999999999999999644 5699999998877422211 111     234777889999999999999876421110  


Q ss_pred             cChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCC-cEEEEEEccCCCCHHHHHHHHHHhC-Cceeeecccc
Q psy6874         405 ASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGG-RVRLILSGGAPLSPDTHELIKVCLC-EKVIQGYGLT  482 (504)
Q Consensus       405 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~-~lr~i~~gG~~l~~~~~~~~~~~~~-~~v~~~YG~T  482 (504)
                                                             .... ++|.+++||+++++++++.+++.|+ .+++++||+|
T Consensus       287 ---------------------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~T  327 (534)
T COG0318         287 ---------------------------------------DDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLT  327 (534)
T ss_pred             ---------------------------------------cccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeeccc
Confidence                                                   0002 4999999999999999999999997 4799999999


Q ss_pred             ccccceeecccCC-CCCccCCC
Q psy6874         483 ETTSCATVMHLND-MGNINSNG  503 (504)
Q Consensus       483 Et~~~~~~~~~~d-~~~~~s~G  503 (504)
                      |+++.++.+...+ ....+++|
T Consensus       328 E~~~~~~~~~~~~~~~~~~~~G  349 (534)
T COG0318         328 ETSPVVTINPPDDLLAKPGSVG  349 (534)
T ss_pred             ccCceeecCCCchhhhcCCccc
Confidence            9998888877766 33555555

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=3.4e-41  Score=363.13  Aligned_cols=343  Identities=17%  Similarity=0.250  Sum_probs=252.5

Q ss_pred             CCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEE
Q psy6874          89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVV  168 (504)
Q Consensus        89 ~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Va  168 (504)
                      ...|+.+.|+++++++|+++|+...+                  ..++++++||+||.++++++|++|.+.|+++||+|+
T Consensus        37 ~~~~l~~~l~~~a~~~p~~~a~~~~~------------------~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Va   98 (614)
T PRK08180         37 YPRRLTDRLVHWAQEAPDRVFLAERG------------------ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLM   98 (614)
T ss_pred             cCccHHHHHHHHHHHCCCCceeeecc------------------CCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            35689999999999999999996431                  113457899999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCCeEEEecCCCC-----HHHHHHhHhcccccEEEEcCCc--hhHHHHHhhcCCCceEEEEE
Q psy6874         169 IFAETRAEWMIAAQACFKQNIPVVTIYATLG-----EEAIAHGINETEVNIVITTHDL--LPKFRNILKLTPRVSTLIYM  241 (504)
Q Consensus       169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~-----~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~l~~ii~~  241 (504)
                      ++++|++||+++++||+++|++++|+++.++     .+++.+++++++++++|+++..  ...+....   .....++..
T Consensus        99 i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~---~~~~~~i~~  175 (614)
T PRK08180         99 ILSGNSIEHALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVV---PADVEVVAV  175 (614)
T ss_pred             EecCCCHHHHHHHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhc---cCCceEEEe
Confidence            9999999999999999999999999999988     7999999999999999998642  11121111   111223333


Q ss_pred             cCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccC
Q psy6874         242 EDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVH  321 (504)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~  321 (504)
                      +...         ......+++++.+...............++|+++|+|||||||.||||++||+|+.+++......+.
T Consensus       176 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~  246 (614)
T PRK08180        176 RGAV---------PGRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFP  246 (614)
T ss_pred             cCCC---------CCcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhcc
Confidence            2210         0011245666554321110011112346789999999999999999999999999988877766665


Q ss_pred             CC--CCcEEEEecChHHHHHHH-HHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHH
Q psy6874         322 IE--PNDVFLGYLPLAHVFELL-SESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGV  398 (504)
Q Consensus       322 ~~--~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~  398 (504)
                      +.  .+|++++++|++|++++. .++.+++.|+++++.+..........    .++.+++++||+++++|.++..+.+..
T Consensus       247 ~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~----~l~~i~~~~~t~~~~vP~~~~~l~~~~  322 (614)
T PRK08180        247 FLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDE----TLRNLREISPTVYFNVPKGWEMLVPAL  322 (614)
T ss_pred             ccCCCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHH----HHHHHHHhCCcEEechHHHHHHHHHHH
Confidence            53  578999999999999986 46688999999998653111111001    134578999999999999999998753


Q ss_pred             HHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHH----hC--
Q psy6874         399 HEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVC----LC--  472 (504)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~----~~--  472 (504)
                      .+.    +                                 .....++++||.+++||+++++++.+++++.    +|  
T Consensus       323 ~~~----~---------------------------------~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~  365 (614)
T PRK08180        323 ERD----A---------------------------------ALRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGER  365 (614)
T ss_pred             Hhc----h---------------------------------hhhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCC
Confidence            211    0                                 0112234799999999999999999999864    33  


Q ss_pred             CceeeeccccccccceeecccCCCCCccCCC
Q psy6874         473 EKVIQGYGLTETTSCATVMHLNDMGNINSNG  503 (504)
Q Consensus       473 ~~v~~~YG~TEt~~~~~~~~~~d~~~~~s~G  503 (504)
                      ++++++||+||+++.++.....+ ...+++|
T Consensus       366 ~~l~~~YG~TE~~~~~~~~~~~~-~~~~svG  395 (614)
T PRK08180        366 IRMMTGLGMTETAPSATFTTGPL-SRAGNIG  395 (614)
T ss_pred             ceeeeeecccccCCceEeccccc-CCCCccc
Confidence            78999999999987666554332 3455666

>KOG1176|consensus

Probab=100.00  E-value=4e-42  Score=353.22  Aligned_cols=309  Identities=26%  Similarity=0.349  Sum_probs=246.9

Q ss_pred             eEEeHHHHHHHHHHHHHHHHhCC--CCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEE
Q psy6874         138 EWRSFNQVNDEAEAFGKGLRSLG--QEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIV  215 (504)
Q Consensus       138 ~~~Ty~el~~~~~~la~~L~~~G--v~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~v  215 (504)
                      +.+||+|+++++.++|..|.++|  +++||+|++++||+++++.+++||.+.|++..++||.+.+.++.+.++.++++++
T Consensus        44 ~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kii  123 (537)
T KOG1176|consen   44 RELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLI  123 (537)
T ss_pred             cEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEE
Confidence            68999999999999999999875  8999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCchhHHHHHhhcCCCceEEEEEcCCCCcccccccCCCceeee-hhHHHhcccccCCCCCCCCCCCCCEEEEEecCC
Q psy6874         216 ITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVP-FKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSG  294 (504)
Q Consensus       216 i~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSG  294 (504)
                      +++.+..+++.++....+  ..++.+....   ............. +.++......   .. ..+...+|++.|+||||
T Consensus       124 f~d~~~~~~i~~~~~~~~--~~i~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~dd~~~il~SSG  194 (537)
T KOG1176|consen  124 FVDEDFYDKISEATSKLA--LKIIVLTGDE---GVISISDLVEDLDAFEDLMPEGLP---DG-IRPVSEDDTAAILYSSG  194 (537)
T ss_pred             EEcCchHHHHHHHHhhcC--CceEEEeccc---CccccccccccccchhhccccCCC---cc-cccCCCCCeEEEecCCC
Confidence            999999998887776555  4444444320   0000111111122 4443333222   11 45667799999999999


Q ss_pred             CCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEc-CccccccchhhhccCCc
Q psy6874         295 STGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYS-TPLTMIDTSSKIKRGTK  373 (504)
Q Consensus       295 TTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~-~~~~~~~~~~~i~~~~~  373 (504)
                      |||.||||++||+|++.+.........+...|+.++.+|++|++|++..+.+++.|++..+. ........        +
T Consensus       195 TTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~--------~  266 (537)
T KOG1176|consen  195 TTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELF--------L  266 (537)
T ss_pred             CCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHH--------H
Confidence            99999999999999999988777777778899999999999999999887755555555444 43333332        3


Q ss_pred             ccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEE
Q psy6874         374 GDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLIL  453 (504)
Q Consensus       374 ~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~  453 (504)
                      +.+++|++|++.++|.++..+.+..                                 ..+.+        ..+++|.++
T Consensus       267 ~~i~kykvt~~~~vP~~~~~l~~~p---------------------------------~~~~~--------~l~sl~~v~  305 (537)
T KOG1176|consen  267 DLIEKYKVTHLFLVPPVLNMLAKSP---------------------------------IVKKY--------DLSSLRSVL  305 (537)
T ss_pred             HHHHHhCEEEEEcChHHHHHHhcCC---------------------------------ccCcc--------cCCccEEEE
Confidence            4589999999999999999998742                                 11111        237999999


Q ss_pred             EccCCCCHHHHHHHHHHhC-CceeeeccccccccceeecccCCCCCccCCCC
Q psy6874         454 SGGAPLSPDTHELIKVCLC-EKVIQGYGLTETTSCATVMHLNDMGNINSNGL  504 (504)
Q Consensus       454 ~gG~~l~~~~~~~~~~~~~-~~v~~~YG~TEt~~~~~~~~~~d~~~~~s~G~  504 (504)
                      +||+|+++++.+.+++.++ ..+.|+|||||+++.++.+...+.++.+|+|.
T Consensus       306 ~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~  357 (537)
T KOG1176|consen  306 SGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGR  357 (537)
T ss_pred             ecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCc
Confidence            9999999999999999998 89999999999998888887666567888884

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2e-41  Score=360.68  Aligned_cols=316  Identities=19%  Similarity=0.247  Sum_probs=254.7

Q ss_pred             cHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEc
Q psy6874          92 TMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFA  171 (504)
Q Consensus        92 tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~  171 (504)
                      ++.++|++.++.+||++|+.+.                       .+.+||+|+.++++++|+.|.+.|+++||+|++++
T Consensus        50 ~~~~~~~~~a~~~pd~~Al~~~-----------------------~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~  106 (549)
T PRK07788         50 PFAGLVAHAARRAPDRAALIDE-----------------------RGTLTYAELDEQSNALARGLLALGVRAGDGVAVLA  106 (549)
T ss_pred             hHHHHHHHHHHHCCCceEEEEC-----------------------CCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence            7899999999999999999631                       25799999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccccc
Q psy6874         172 ETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT  251 (504)
Q Consensus       172 ~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~  251 (504)
                      +|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+.++....+.++.++.....  .    
T Consensus       107 ~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----  180 (549)
T PRK07788        107 RNHRGFVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDD--D----  180 (549)
T ss_pred             CCCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCc--c----
Confidence            9999999999999999999999999999999999999999999999988776665554444444443332221  0    


Q ss_pred             ccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEEe
Q psy6874         252 NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGY  331 (504)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~  331 (504)
                       .+....+..++++......     .+.+...+++++++|||||||.||||+++|.++.+.+......+.+.++|+++..
T Consensus       181 -~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~  254 (549)
T PRK07788        181 -EPSGSTDETLDDLIAGSST-----APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLP  254 (549)
T ss_pred             -ccCCcCcccHHHHhcCCCC-----CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEc
Confidence             0112345567777654321     1122345788999999999999999999999999988888788888999999999


Q ss_pred             cChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHH
Q psy6874         332 LPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRA  411 (504)
Q Consensus       332 lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~  411 (504)
                      +|++|++++...+.++..|+++++.........        +..+++++||++.++|+++..+.+.......        
T Consensus       255 ~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~--------~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~--------  318 (549)
T PRK07788        255 APMFHATGWAHLTLAMALGSTVVLRRRFDPEAT--------LEDIAKHKATALVVVPVMLSRILDLGPEVLA--------  318 (549)
T ss_pred             cchHHHHHHHHHHHHHHhCCEEEECCCCCHHHH--------HHHHHHhCCcEEEEHHHHHHHHHhCcccccC--------
Confidence            999999999877889999999988743322221        3458899999999999999988763211000        


Q ss_pred             HHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccccccccee
Q psy6874         412 LFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCAT  489 (504)
Q Consensus       412 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~  489 (504)
                                                     ....++||.+++||+++++++.++++..+++++++.||+||++..+.
T Consensus       319 -------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~  365 (549)
T PRK07788        319 -------------------------------KYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATI  365 (549)
T ss_pred             -------------------------------CCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhc
Confidence                                           01126899999999999999999999989999999999999875443

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-40  Score=359.47  Aligned_cols=345  Identities=20%  Similarity=0.270  Sum_probs=248.4

Q ss_pred             CCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEE
Q psy6874          89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVV  168 (504)
Q Consensus        89 ~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Va  168 (504)
                      +..++.++|+++++++||++|+.+++.                 ..+.++.+||+|+.++++++|++|.+.|+++||+|+
T Consensus        47 ~~~~l~~~l~~~a~~~pd~~a~~~~~~-----------------~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~  109 (624)
T PRK12582         47 YPRSIPHLLAKWAAEAPDRPWLAQREP-----------------GHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVM  109 (624)
T ss_pred             cccCHHHHHHHHHHHCCCchheecccC-----------------CCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            567899999999999999999964320                 013457899999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCH-----HHHHHhHhcccccEEEEcCCc-hhHHHHHhhcCCCceEEEEEc
Q psy6874         169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGE-----EAIAHGINETEVNIVITTHDL-LPKFRNILKLTPRVSTLIYME  242 (504)
Q Consensus       169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~-----~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~l~~ii~~~  242 (504)
                      ++++|++||+++++||+++|++++|+++.++.     +++.+++++++++++|+++.. .......... ...+ ++.++
T Consensus       110 i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~-~i~~~  187 (624)
T PRK12582        110 ILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDL-LDVT-VVHVT  187 (624)
T ss_pred             EecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhh-cCce-EEEEc
Confidence            99999999999999999999999999999875     899999999999999998642 1111111111 1222 33333


Q ss_pred             CCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCC
Q psy6874         243 DQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHI  322 (504)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~  322 (504)
                      ..  .       .+.....++++.................++++++|+|||||||.||||++||+|+.++..........
T Consensus       188 ~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~  258 (624)
T PRK12582        188 GP--G-------EGIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPR  258 (624)
T ss_pred             CC--C-------cccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccc
Confidence            21  0       01123445665443211100011123457899999999999999999999999999887766544444


Q ss_pred             CC---CcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHH
Q psy6874         323 EP---NDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGV  398 (504)
Q Consensus       323 ~~---~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~  398 (504)
                      ..   +|++++++|++|++++.. ++.++..|+++++.+.........    ..++.+++++||++.++|.++..+.+.+
T Consensus       259 ~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~----~~~~~i~~~~~t~~~~vP~~~~~l~~~~  334 (624)
T PRK12582        259 EPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFE----ETIRNLREISPTVYGNVPAGYAMLAEAM  334 (624)
T ss_pred             cCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHH----HHHHHHHhcCCeEEeccCHHHHHHHHHH
Confidence            43   589999999999999875 557889999998865321111110    0133578899999999999999887643


Q ss_pred             HHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh------C
Q psy6874         399 HEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL------C  472 (504)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~------~  472 (504)
                      ...                             +.        .+...+++||.+++||+++++++.++++..+      +
T Consensus       335 ~~~-----------------------------~~--------~~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~  377 (624)
T PRK12582        335 EKD-----------------------------DA--------LRRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHR  377 (624)
T ss_pred             hhC-----------------------------HH--------HHHHHhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCC
Confidence            211                             00        0111226899999999999999999998753      3


Q ss_pred             CceeeeccccccccceeecccCCCCCccCCC
Q psy6874         473 EKVIQGYGLTETTSCATVMHLNDMGNINSNG  503 (504)
Q Consensus       473 ~~v~~~YG~TEt~~~~~~~~~~d~~~~~s~G  503 (504)
                      ++++++||+||+++.++.....+ ...+++|
T Consensus       378 ~~l~~~YG~TE~~~~~~~~~~~~-~~~~svG  407 (624)
T PRK12582        378 IPFYTGYGATETAPTTTGTHWDT-ERVGLIG  407 (624)
T ss_pred             ceEEeccccccccceeecccCCC-CCCCCCC
Confidence            68999999999976554333222 3445666

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=1.3e-40  Score=360.91  Aligned_cols=356  Identities=19%  Similarity=0.193  Sum_probs=254.1

Q ss_pred             cccccCCCCcH-HHHHHHHHH-hCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCC
Q psy6874          83 IRLIRDGVDTM-EKVLRYVVT-RFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLG  160 (504)
Q Consensus        83 ~~~~~~~~~tl-~~~~~~~~~-~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~G  160 (504)
                      .+|+..+..|+ .++++++++ .+|+++|+.+..                 ...+..+.+||+||.++++++|++|+++|
T Consensus        79 ~~wf~g~~~N~~~~~l~~~~~~~~~~~~Al~~~~-----------------~~~~~~~~~Ty~eL~~~v~~lA~~L~~~G  141 (666)
T PLN02654         79 IEWFKGGKTNICYNCLDRNVEAGNGDKIAIYWEG-----------------NEPGFDASLTYSELLDRVCQLANYLKDVG  141 (666)
T ss_pred             ccccCCCEeeHHHHHHHHhhccCCCCCEEEEEEc-----------------CCCCceEEEeHHHHHHHHHHHHHHHHHcC
Confidence            45644455555 678877765 489999996421                 01133478999999999999999999999


Q ss_pred             CCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch---------hHHHHHhhc
Q psy6874         161 QEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL---------PKFRNILKL  231 (504)
Q Consensus       161 v~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~  231 (504)
                      +++||+|+++++|++|++++++||+++|++++|+++.++++++.+++++++++++|++++..         +.+..+...
T Consensus       142 v~~GdrV~i~~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~  221 (666)
T PLN02654        142 VKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDE  221 (666)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999987642         122222221


Q ss_pred             C----CCceEEEEEcCCCCc-ccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecH
Q psy6874         232 T----PRVSTLIYMEDQLTS-TDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTH  306 (504)
Q Consensus       232 ~----~~l~~ii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th  306 (504)
                      .    .....++..+..... ....... ......|+++......   ..+.....++|+++|+|||||||.||||+++|
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh  297 (666)
T PLN02654        222 SAKNGVSVGICLTYENQLAMKREDTKWQ-EGRDVWWQDVVPNYPT---KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTT  297 (666)
T ss_pred             ccccCCCccEEEEecccccccccccccc-cCCcccHHHHhhcCCC---CCCceecCCCCceEEEecCCCCCCCceEEecc
Confidence            1    111222222221000 0000000 0112345555432211   12223356799999999999999999999999


Q ss_pred             HHHHH-HHHhhhhccCCCCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCcccc-ccchhhhccCCcccccccCCcE
Q psy6874         307 DNMIS-TLKAFSDAVHIEPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTM-IDTSSKIKRGTKGDASVLHPTA  383 (504)
Q Consensus       307 ~~l~~-~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~-~~~~~~i~~~~~~~i~~~~~T~  383 (504)
                      .+++. ........++++++|+++++.|++|+++... .+.+|+.|+++++.+.... .+....     ++.++++++|+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~-----~~~i~~~~vt~  372 (666)
T PLN02654        298 GGYMVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRC-----WDIVDKYKVTI  372 (666)
T ss_pred             cHHHHHHHHHHHHhcCCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHH-----HHHHHHhCCeE
Confidence            99764 3444555678999999999999999998764 6789999999998865322 222211     44589999999


Q ss_pred             EEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHH
Q psy6874         384 LTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDT  463 (504)
Q Consensus       384 ~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~  463 (504)
                      +.++|+++..+.+...+..                                       .....++||.+++||+|+++++
T Consensus       373 ~~~~P~~~~~l~~~~~~~~---------------------------------------~~~~l~~Lr~i~~~Ge~l~~~~  413 (666)
T PLN02654        373 FYTAPTLVRSLMRDGDEYV---------------------------------------TRHSRKSLRVLGSVGEPINPSA  413 (666)
T ss_pred             EEeCHHHHHHHHhhCcccc---------------------------------------ccCChhheeEEEEecCCCCHHH
Confidence            9999999999876311100                                       0111268999999999999999


Q ss_pred             HHHHHHHhC---CceeeeccccccccceeecccCC-CCCccCCC
Q psy6874         464 HELIKVCLC---EKVIQGYGLTETTSCATVMHLND-MGNINSNG  503 (504)
Q Consensus       464 ~~~~~~~~~---~~v~~~YG~TEt~~~~~~~~~~d-~~~~~s~G  503 (504)
                      .+++.+.+|   +++.+.||+||+++..+...+.. ...++++|
T Consensus       414 ~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G  457 (666)
T PLN02654        414 WRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSAT  457 (666)
T ss_pred             HHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccC
Confidence            999998887   78999999999986555433322 23445555

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=1.3e-40  Score=355.46  Aligned_cols=326  Identities=21%  Similarity=0.213  Sum_probs=250.9

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      .-++.++|++.++++|+++|+..                      ++ +.+||+|+.++++++|++|.++|+++||+|++
T Consensus         6 ~~~~~~~~~~~~~~~p~~~a~~~----------------------~~-~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v   62 (563)
T PLN02860          6 QAHICQCLTRLATLRGNAVVTIS----------------------GN-RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAI   62 (563)
T ss_pred             hhHHHHHHHHHHHhcCCceEEec----------------------CC-ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence            45789999999999999999852                      11 57999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHh-hcCCCceEEEEEcCCCCcc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNIL-KLTPRVSTLIYMEDQLTST  248 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~l~~ii~~~~~~~~~  248 (504)
                      +++|+++|+++++||+++|++++|+++.++.+++.++++++++++++++++.......+. ...+.++.+++.++.....
T Consensus        63 ~~~n~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  142 (563)
T PLN02860         63 AALNSDLYLEWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSV  142 (563)
T ss_pred             EcCCCHHHHHHHHHHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCccccc
Confidence            999999999999999999999999999999999999999999999999876533232221 2344555555554321000


Q ss_pred             cccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEE
Q psy6874         249 DTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVF  328 (504)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~  328 (504)
                          ..........+++.......  ........++++++|+|||||||.||||+++|.+++.+.......+++.++|++
T Consensus       143 ----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~  216 (563)
T PLN02860        143 ----FIFLNSFLTTEMLKQRALGT--TELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVY  216 (563)
T ss_pred             ----ccchhhccccchhccCcccc--ccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEE
Confidence                00000112222221111000  111123457899999999999999999999999998877776667788999999


Q ss_pred             EEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChH
Q psy6874         329 LGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPF  408 (504)
Q Consensus       329 l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~  408 (504)
                      +.++|++|++++...+.++..|+++++.+.......        ++.++++++|++.++|.++..+.+......      
T Consensus       217 l~~~pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~--------~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~------  282 (563)
T PLN02860        217 LHTAPLCHIGGLSSALAMLMVGACHVLLPKFDAKAA--------LQAIKQHNVTSMITVPAMMADLISLTRKSM------  282 (563)
T ss_pred             EEecCchhhccHHHHHHHHHcCceEEecCCCCHHHH--------HHHHHHhCCeeEEeChHHHHHHHHhhhhhh------
Confidence            999999999999888899999999998764322221        345889999999999999999876421100      


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeeccccccccc
Q psy6874         409 KRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTSC  487 (504)
Q Consensus       409 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~~  487 (504)
                                                       .....+++|.+++||+++++++.+++++.| +++++++||+||+++.
T Consensus       283 ---------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~  329 (563)
T PLN02860        283 ---------------------------------TWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSS  329 (563)
T ss_pred             ---------------------------------ccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcc
Confidence                                             001126899999999999999999999888 7899999999999866


Q ss_pred             eeec
Q psy6874         488 ATVM  491 (504)
Q Consensus       488 ~~~~  491 (504)
                      ++..
T Consensus       330 ~~~~  333 (563)
T PLN02860        330 LTFM  333 (563)
T ss_pred             cccc
Confidence            5544

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.2e-40  Score=357.99  Aligned_cols=353  Identities=18%  Similarity=0.191  Sum_probs=249.0

Q ss_pred             cccccCC-CCcHHHHHHHHHHh--CCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhC
Q psy6874          83 IRLIRDG-VDTMEKVLRYVVTR--FSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSL  159 (504)
Q Consensus        83 ~~~~~~~-~~tl~~~~~~~~~~--~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~  159 (504)
                      .+|+..+ ..+..++++++++.  +||++|+.+..                 ...++.+.+||+||.++++++|++|+++
T Consensus        50 ~~wf~~~~~n~~~~~l~~~~~~~~~~~~~A~~~~~-----------------~~~~~~~~~Ty~eL~~~v~~lA~~L~~~  112 (647)
T PTZ00237         50 PDWFKGGELNTCYNVLDIHVKNPLKRDQDALIYEC-----------------PYLKKTIKLTYYQLYEKVCEFSRVLLNL  112 (647)
T ss_pred             hhhCCCCeeeHHHHHHHHhhcccCCCCceEEEEEc-----------------CCCCceEEEEHHHHHHHHHHHHHHHHHc
Confidence            4553333 44567788887754  79999996431                 0112246899999999999999999999


Q ss_pred             CCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCC---------chhHHHHHhh
Q psy6874         160 GQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHD---------LLPKFRNILK  230 (504)
Q Consensus       160 Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~---------~~~~~~~~~~  230 (504)
                      |+++||+|+++++|++|++++++||+++|++++|+++.++.+++.++|+++++++||+++.         ..+.+.++..
T Consensus       113 Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~  192 (647)
T PTZ00237        113 NISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIE  192 (647)
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999763         2233443332


Q ss_pred             cCC-CceEEEEEcCCC--Cccccc---ccCCCceeeehhHHHhcccccC--CCCCCCCCCCCCEEEEEecCCCCCCcceE
Q psy6874         231 LTP-RVSTLIYMEDQL--TSTDTT---NFKQGIEIVPFKQIVKRGSESG--SRYEGSPPTPKDTAIIMYTSGSTGTPKGV  302 (504)
Q Consensus       231 ~~~-~l~~ii~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~yTSGTTG~PKgV  302 (504)
                      ... ..++++.+....  ...+..   ..+.......|++++.......  .........++|+++|+|||||||.||||
T Consensus       193 ~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV  272 (647)
T PTZ00237        193 LSTFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAV  272 (647)
T ss_pred             cccCCCCEEEEEEcCCcccccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeE
Confidence            111 234555442110  000000   0000112345777654321110  01122345679999999999999999999


Q ss_pred             EecHHH-HHHHHHhhhhccCCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCC
Q psy6874         303 VLTHDN-MISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHP  381 (504)
Q Consensus       303 ~~th~~-l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~  381 (504)
                      +++|.+ +++.............+|++++..|++|+.+....+.+++.|+++++.+........  .....++.++++++
T Consensus       273 ~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~--~~~~~~~~i~~~~v  350 (647)
T PTZ00237        273 VRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKH--IEDDLWNTIEKHKV  350 (647)
T ss_pred             EEcCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCC--chHHHHHHHHHhCe
Confidence            999998 544433334445677899999999999987666678899999999987642111000  00112446899999


Q ss_pred             cEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCH
Q psy6874         382 TALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSP  461 (504)
Q Consensus       382 T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~  461 (504)
                      |++.++|++++.+.+...+..                            ..        ......++||.+++||+|+++
T Consensus       351 t~~~~~P~~~~~l~~~~~~~~----------------------------~~--------~~~~~l~~Lr~i~~~G~~l~~  394 (647)
T PTZ00237        351 THTLTLPKTIRYLIKTDPEAT----------------------------II--------RSKYDLSNLKEIWCGGEVIEE  394 (647)
T ss_pred             EEEEeCHHHHHHHHhhCcccc----------------------------cc--------ccccCcchheEEEecCccCCH
Confidence            999999999998876311000                            00        001122689999999999999


Q ss_pred             HHHHHHHHHhCCceeeeccccccccceee
Q psy6874         462 DTHELIKVCLCEKVIQGYGLTETTSCATV  490 (504)
Q Consensus       462 ~~~~~~~~~~~~~v~~~YG~TEt~~~~~~  490 (504)
                      ++.++++..+|+++++.||+||+++..+.
T Consensus       395 ~~~~~~~~~~g~~i~~~yG~TE~~~~~~~  423 (647)
T PTZ00237        395 SIPEYIENKLKIKSSRGYGQTEIGITYLY  423 (647)
T ss_pred             HHHHHHHHhcCCCEEeeechHHhChhhhc
Confidence            99999999999999999999999765443

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=3.8e-40  Score=356.11  Aligned_cols=334  Identities=19%  Similarity=0.194  Sum_probs=254.6

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      .....++++++++.+|+++|+.+..      +           ..++.+.+||+||.++++++|++|+++|+++||+|++
T Consensus        56 ~n~~~~~l~~~~~~~p~~~Al~~~~------~-----------~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i  118 (625)
T TIGR02188        56 LNVSYNCVDRHLEARPDKVAIIWEG------D-----------EPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAI  118 (625)
T ss_pred             EEHHHHHHHHhhccCCCCeEEEEEc------C-----------CCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            3345778888888899999997532      0           0134578999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCc---------hhHHHHHhhcCC-CceEEE
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDL---------LPKFRNILKLTP-RVSTLI  239 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~-~l~~ii  239 (504)
                      +++|++|++++++||+++|++++|+++.++++++.+++++++++++|++++.         .+.+.+.....+ .++.++
T Consensus       119 ~~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (625)
T TIGR02188       119 YMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVL  198 (625)
T ss_pred             ECCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEE
Confidence            9999999999999999999999999999999999999999999999998753         234445555556 567777


Q ss_pred             EEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHh-hhh
Q psy6874         240 YMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKA-FSD  318 (504)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~-~~~  318 (504)
                      .++.......+.    ......++++......   ........++++++|+|||||||.||||+++|.+++..... ...
T Consensus       199 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~  271 (625)
T TIGR02188       199 VVRRTGNPVPWV----EGRDVWWHDLMAKASA---YCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKY  271 (625)
T ss_pred             EEcCCCCCcCcc----ccccccHHHHHhhcCC---CCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHh
Confidence            665421110110    1123456666544321   22233456789999999999999999999999998655433 334


Q ss_pred             ccCCCCCcEEEEecChHHHHHHH-HHHHHHHhCCeEEEcCcccc-ccchhhhccCCcccccccCCcEEEeccHHHHHHHH
Q psy6874         319 AVHIEPNDVFLGYLPLAHVFELL-SESVCLLCGVAIGYSTPLTM-IDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYK  396 (504)
Q Consensus       319 ~~~~~~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~~-~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~  396 (504)
                      .+++.++|+++++.|++|+.+.. .++.+|..|+++++.+.... .+...     .++.++++++|++.++|++++.+.+
T Consensus       272 ~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~-----~~~~i~~~~vt~~~~~P~~~~~l~~  346 (625)
T TIGR02188       272 VFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGR-----FWEIIEKHKVTIFYTAPTAIRALMR  346 (625)
T ss_pred             ccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhH-----HHHHHHHhCCeEEEeCHHHHHHHHh
Confidence            56888999999999999998875 47789999999998754321 12221     1446899999999999999998876


Q ss_pred             HHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhC---C
Q psy6874         397 GVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLC---E  473 (504)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~---~  473 (504)
                      ...+.                                       .....+++||.+++||+++++++++++++.++   +
T Consensus       347 ~~~~~---------------------------------------~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~  387 (625)
T TIGR02188       347 LGDEW---------------------------------------VKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERC  387 (625)
T ss_pred             cCCcc---------------------------------------cccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCC
Confidence            31110                                       01112368999999999999999999998885   7


Q ss_pred             ceeeeccccccccceeec
Q psy6874         474 KVIQGYGLTETTSCATVM  491 (504)
Q Consensus       474 ~v~~~YG~TEt~~~~~~~  491 (504)
                      ++++.||+||+++.++..
T Consensus       388 ~i~~~yG~TE~~~~~~~~  405 (625)
T TIGR02188       388 PIVDTWWQTETGGIMITP  405 (625)
T ss_pred             ceEecccccccCCceeec
Confidence            899999999998765443

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>KOG1179|consensus

Probab=100.00  E-value=8.6e-41  Score=328.02  Aligned_cols=318  Identities=19%  Similarity=0.239  Sum_probs=254.8

Q ss_pred             cCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy6874          87 RDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHN  166 (504)
Q Consensus        87 ~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~  166 (504)
                      .....|+.++|...++++|+++|+++.+                     ..+.+||+|+.++++++|+.|+..|++.||+
T Consensus        73 rr~~~ti~~~F~~~vrr~p~k~aii~~~---------------------~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~  131 (649)
T KOG1179|consen   73 RRERRTIAELFLSQVRRQPDKPAIIYEG---------------------PFQSLTFAELDARSNRVANYLHAEGLKAGDV  131 (649)
T ss_pred             hccCCcHHHHHHHHHHhCCCccEEEEeC---------------------CCceeeHHHHHHHHHHHHHHHHHhhcccCCE
Confidence            4456789999999999999999998653                     2367999999999999999999999999999


Q ss_pred             EEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCc-eEEEEEcCCC
Q psy6874         167 VVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRV-STLIYMEDQL  245 (504)
Q Consensus       167 Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l-~~ii~~~~~~  245 (504)
                      ||++++|++|++.+|+|++++|++.+.||+++..+.|.|+|+.++++.+|++.++.+.+.++.+..... -.++..+.. 
T Consensus       132 VAL~men~pefv~lWlGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~-  210 (649)
T KOG1179|consen  132 VALLMENRPEFVALWLGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPT-  210 (649)
T ss_pred             EEEecCCChhHHHHHHhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCC-
Confidence            999999999999999999999999999999999999999999999999999999887777763322111 122222221 


Q ss_pred             CcccccccCCCceeeehhHHHhcccccCCC-CCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCC
Q psy6874         246 TSTDTTNFKQGIEIVPFKQIVKRGSESGSR-YEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEP  324 (504)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~  324 (504)
                            ..+.  .+.++...++.......+ ......+..++++.+|||||||.||+++++|.........+...+++++
T Consensus       211 ------~~~~--g~~~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~  282 (649)
T KOG1179|consen  211 ------SVPD--GIESLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTA  282 (649)
T ss_pred             ------CCCc--hHHHHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence                  0111  122233322222221101 2223446678999999999999999999999999988888888999999


Q ss_pred             CcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHh
Q psy6874         325 NDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVS  403 (504)
Q Consensus       325 ~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~  403 (504)
                      +|+++..+||+|+.+.+. +..|+..|+|+++-..+.....        |+|+.++++|++..+-.+.+.+.++...+-+
T Consensus       283 ~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkKFSAS~F--------W~DC~k~~~Tv~QYIGElcRYLl~~p~~~~e  354 (649)
T KOG1179|consen  283 DDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKKFSASNF--------WDDCRKYNVTVIQYIGELCRYLLNQPPSPEE  354 (649)
T ss_pred             cceEEEcchhHHHHHHHHHHHHHHhcCceEEEecccchhhh--------HHHHHHhCCeeeehHHHHHHHHHcCCCChhh
Confidence            999999999999999884 7799999999999765544332        6689999999999999999998875322211


Q ss_pred             ccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCc-eeeecccc
Q psy6874         404 RASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEK-VIQGYGLT  482 (504)
Q Consensus       404 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~-v~~~YG~T  482 (504)
                      +                                         .+++|+++  |..|.+++++.|..+||.+ |.+.||+|
T Consensus       355 r-----------------------------------------~HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaT  391 (649)
T KOG1179|consen  355 R-----------------------------------------QHKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGAT  391 (649)
T ss_pred             c-----------------------------------------CceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccc
Confidence            1                                         16899998  9999999999999999876 99999999


Q ss_pred             ccc
Q psy6874         483 ETT  485 (504)
Q Consensus       483 Et~  485 (504)
                      |..
T Consensus       392 Egn  394 (649)
T KOG1179|consen  392 EGN  394 (649)
T ss_pred             cCc
Confidence            974

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=5.9e-40  Score=354.41  Aligned_cols=339  Identities=18%  Similarity=0.189  Sum_probs=251.0

Q ss_pred             ccccCCCCcH-HHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCC
Q psy6874          84 RLIRDGVDTM-EKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQE  162 (504)
Q Consensus        84 ~~~~~~~~tl-~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~  162 (504)
                      +|+..+..++ .+++++++..+|+++|+.+..                 ...++.+.+||+||.++++++|++|+++|++
T Consensus        44 ~wf~~~~~n~~~~~l~~~~~~~p~~~Al~~~~-----------------~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~  106 (628)
T TIGR02316        44 RWFAGGRTNLCHNALDRHLDERGEQLALVTVS-----------------SETGQERTLTYRQLHREVNVFASALRALGVG  106 (628)
T ss_pred             ccCCCCEeeHHHHHHHHHhCcCCCCeEEEEEc-----------------CCCCceEEEeHHHHHHHHHHHHHHHHHcCCC
Confidence            4434444444 678888888899999996431                 0113447899999999999999999999999


Q ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCc---------hhHHHHHhhcC-
Q psy6874         163 PRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDL---------LPKFRNILKLT-  232 (504)
Q Consensus       163 ~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~-  232 (504)
                      +||+|+++++|++|++++++||+++|++++|+++.++.+++.+++++++++++|+++..         .+.+.++.... 
T Consensus       107 ~Gd~V~i~~~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (628)
T TIGR02316       107 RGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQ  186 (628)
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999998642         22233332222 


Q ss_pred             CCceEEEEEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHH
Q psy6874         233 PRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST  312 (504)
Q Consensus       233 ~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~  312 (504)
                      +...+++.++........  .+  .....|+++.......  ..+.....++++++|+|||||||.||||+++|.++..+
T Consensus       187 ~~~~~vi~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~  260 (628)
T TIGR02316       187 HPPPHVLLVDRGLAPMRL--IP--GRDVDYAALRTQHEDA--QVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVA  260 (628)
T ss_pred             CCCCEEEEEeCCCCCcCc--cc--CccccHHHHhhccccC--CCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHH
Confidence            334566666542111000  00  1124566654432211  12223346799999999999999999999999997543


Q ss_pred             -HHhhhhccCCCCCcEEEEecChHHHHHHH-HHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHH
Q psy6874         313 -LKAFSDAVHIEPNDVFLGYLPLAHVFELL-SESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLI  390 (504)
Q Consensus       313 -~~~~~~~~~~~~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~  390 (504)
                       .......++++++|++++..|+.|+.++. .++.+|+.|+++++.+..........    .++.++++++|++.++|++
T Consensus       261 ~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~----~~~~i~~~~vt~~~~~P~~  336 (628)
T TIGR02316       261 LALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGV----WWSIVERYGVRTMFSAPTA  336 (628)
T ss_pred             HHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHH----HHHHHHHhCCeEEEeCHHH
Confidence             44445566889999999999999999875 47789999999998764322111111    1345889999999999999


Q ss_pred             HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHH
Q psy6874         391 LDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVC  470 (504)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~  470 (504)
                      ++.+.+.....                                       ......++||.+++||+++++++.++++..
T Consensus       337 ~~~l~~~~~~~---------------------------------------~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~  377 (628)
T TIGR02316       337 IRVLKKQDAAW---------------------------------------LRKHDLSSLHWLFLAGEPLDEPTAHWITDG  377 (628)
T ss_pred             HHHHHhcCCcc---------------------------------------cccCCccceeEEEEecCCCCHHHHHHHHHH
Confidence            98876521000                                       011122689999999999999999999998


Q ss_pred             hCCceeeeccccccccce
Q psy6874         471 LCEKVIQGYGLTETTSCA  488 (504)
Q Consensus       471 ~~~~v~~~YG~TEt~~~~  488 (504)
                      ++.++++.||+||++..+
T Consensus       378 ~~~~~~~~yG~TE~~~~~  395 (628)
T TIGR02316       378 LGKPVIDNYWQTETGWPV  395 (628)
T ss_pred             hCCCEEecccccccCcee
Confidence            999999999999997544

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.3e-39  Score=345.81  Aligned_cols=326  Identities=18%  Similarity=0.225  Sum_probs=254.7

Q ss_pred             CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Q psy6874          91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIF  170 (504)
Q Consensus        91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~  170 (504)
                      .++.++|.+.++++||++|+...                       .+.+||+|+.++++++|++|.++|+++|++|+++
T Consensus        43 ~~~~~~l~~~a~~~p~~~a~~~~-----------------------~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~   99 (537)
T PRK13382         43 MGPTSGFAIAAQRCPDRPGLIDE-----------------------LGTLTWRELDERSDALAAALQALPIGEPRVVGIM   99 (537)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEeC-----------------------CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            46899999999999999999621                       2479999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcccc
Q psy6874         171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDT  250 (504)
Q Consensus       171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~  250 (504)
                      ++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+....+..+....+....++...+.  .   
T Consensus       100 ~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---  174 (537)
T PRK13382        100 CRNHRGFVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDE--D---  174 (537)
T ss_pred             ecCcHHHHHHHHHHHHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCC--c---
Confidence            99999999999999999999999999999999999999999999999988766665544334433333333221  0   


Q ss_pred             cccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEE
Q psy6874         251 TNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLG  330 (504)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~  330 (504)
                             ....++++......   ..  ....++++++++|||||||.||||+++|.+++.........+.+..+|+++.
T Consensus       175 -------~~~~~~~~~~~~~~---~~--~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~  242 (537)
T PRK13382        175 -------HDLTVEVLIAAHAG---QR--PEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVI  242 (537)
T ss_pred             -------ccccHHHHhhccCc---CC--CCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEE
Confidence                   01234444332211   11  1234678999999999999999999999999888887777778889999999


Q ss_pred             ecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHH
Q psy6874         331 YLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKR  410 (504)
Q Consensus       331 ~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~  410 (504)
                      .+|++|++++...+.++..|+++++.........        +..++++++|++.++|.++..+.+...+..        
T Consensus       243 ~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~--------~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------  306 (537)
T PRK13382        243 VAPMFHAWGFSQLVLAASLACTIVTRRRFDPEAT--------LDLIDRHRATGLAVVPVMFDRIMDLPAEVR--------  306 (537)
T ss_pred             ecChHhhhHHHHHHHHHhcCcEEEECCCcCHHHH--------HHHHHHhCCEEEEehHHHHHHHHcCCchhc--------
Confidence            9999999999878889999999988654322221        345889999999999999998865211100        


Q ss_pred             HHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccceee
Q psy6874         411 ALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATV  490 (504)
Q Consensus       411 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~~  490 (504)
                                                     ....+.++|.+++||+++++++.+.+...++.+++++||+||++..++.
T Consensus       307 -------------------------------~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~  355 (537)
T PRK13382        307 -------------------------------NRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATA  355 (537)
T ss_pred             -------------------------------ccCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceec
Confidence                                           0011258999999999999999999999899999999999999876554


Q ss_pred             cccCCCCCccCCC
Q psy6874         491 MHLNDMGNINSNG  503 (504)
Q Consensus       491 ~~~~d~~~~~s~G  503 (504)
                      ........++++|
T Consensus       356 ~~~~~~~~~~~vG  368 (537)
T PRK13382        356 TPADLRAAPDTAG  368 (537)
T ss_pred             ChhHhccCCCCcc
Confidence            4322223345555

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.5e-39  Score=345.07  Aligned_cols=329  Identities=22%  Similarity=0.263  Sum_probs=247.8

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..++.+.|.+.++++|++.|+.+                      ...+.+||+||.++++++|+.|.+   .+||+|++
T Consensus        18 ~~~~~~~~~~~~~~~p~~~a~~~----------------------~~~~~~Ty~el~~~~~~lA~~L~~---~~gd~Val   72 (539)
T PRK06334         18 GKTVLESFLKLCSEMTTATVCWD----------------------EQLGKLSYNQVRKAVIALATKVSK---YPDQHIGI   72 (539)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEe----------------------CCCCcccHHHHHHHHHHHHHHHhh---ccCCeEEE
Confidence            46789999999999999998852                      122469999999999999999987   38999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCC-CceEEEEEcCCCCcc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTP-RVSTLIYMEDQLTST  248 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~l~~ii~~~~~~~~~  248 (504)
                      +++|+++|+++++||+++|++++|+++.++.+++.++|+++++++++++.+..+.+.++..... ....++.+++...  
T Consensus        73 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--  150 (539)
T PRK06334         73 MMPASAGAYIAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRK--  150 (539)
T ss_pred             EcCCchHHHHHHHHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhh--
Confidence            9999999999999999999999999999999999999999999999999876665544332111 1113444432100  


Q ss_pred             cccccCCCceeeehhHHHhccc---ccCC----CCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccC
Q psy6874         249 DTTNFKQGIEIVPFKQIVKRGS---ESGS----RYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVH  321 (504)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~  321 (504)
                                ...+.+......   ....    ........++++++|+|||||||.||||++||+++..+.......+.
T Consensus       151 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~  220 (539)
T PRK06334        151 ----------ELSFWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFS  220 (539)
T ss_pred             ----------hccHHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcC
Confidence                      001111100000   0000    00112346789999999999999999999999999988887777788


Q ss_pred             CCCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHH
Q psy6874         322 IEPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHE  400 (504)
Q Consensus       322 ~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~  400 (504)
                      ++++|++++++|++|++++.. .+.++..|+++++....  .+...     .++.++++++|++.++|.++..+.+....
T Consensus       221 ~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~--~~~~~-----~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  293 (539)
T PRK06334        221 PKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNP--LYPKK-----IVEMIDEAKVTFLGSTPVFFDYILKTAKK  293 (539)
T ss_pred             CCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecCC--CCHHH-----HHHHHHHhCCcEEEecHHHHHHHHHhhhh
Confidence            899999999999999999874 67889999999886421  11111     13458899999999999999998764211


Q ss_pred             HHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeec
Q psy6874         401 KVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGY  479 (504)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~Y  479 (504)
                      .                                         ....++||.+++||+++++++.++++..+ +++++++|
T Consensus       294 ~-----------------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~Y  332 (539)
T PRK06334        294 Q-----------------------------------------ESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGY  332 (539)
T ss_pred             c-----------------------------------------ccccccccEEEECCccCCHHHHHHHHHHCCCCeEEecc
Confidence            1                                         01126899999999999999999999888 68999999


Q ss_pred             cccccccceeecccCCCCCccCCC
Q psy6874         480 GLTETTSCATVMHLNDMGNINSNG  503 (504)
Q Consensus       480 G~TEt~~~~~~~~~~d~~~~~s~G  503 (504)
                      |+||+++.++.....+....+++|
T Consensus       333 G~TE~~~~~~~~~~~~~~~~~~vG  356 (539)
T PRK06334        333 GTTECSPVITINTVNSPKHESCVG  356 (539)
T ss_pred             cccccCceEEeccCCCCCCCCcCc
Confidence            999998776665444333344455

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=4.4e-39  Score=342.52  Aligned_cols=323  Identities=17%  Similarity=0.243  Sum_probs=254.8

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..++.++|++.++.+|+++|+.+.+          .       ..++++.+||.|+.++++++|++|.+.|+++||+|++
T Consensus        23 ~~~l~~~l~~~a~~~p~~~A~~~~~----------~-------~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val   85 (547)
T PRK13295         23 DRTINDDLDACVASCPDKTAVTAVR----------L-------GTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSC   85 (547)
T ss_pred             CCCHHHHHHHHHHHCCCceEEEecC----------C-------CccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence            3579999999999999999996421          0       1134578999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCc-----hhHHHHHhhcCCCceEEEEEcCC
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDL-----LPKFRNILKLTPRVSTLIYMEDQ  244 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~l~~ii~~~~~  244 (504)
                      +++|+++|+++++||+++|++++|+++.++.+++.++++.+++++++++++.     .+.+.++....+.++.++.++..
T Consensus        86 ~~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (547)
T PRK13295         86 QLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGD  165 (547)
T ss_pred             ECCCChHHHHHHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCC
Confidence            9999999999999999999999999999999999999999999999998764     22333444455666666665432


Q ss_pred             CCcccccccCCCceeeehhHHHhccccc-----CCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhc
Q psy6874         245 LTSTDTTNFKQGIEIVPFKQIVKRGSES-----GSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA  319 (504)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~  319 (504)
                                   ...++.++.......     ..........++++++++|||||||.||||+++|.++..++......
T Consensus       166 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~  232 (547)
T PRK13295        166 -------------GADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAER  232 (547)
T ss_pred             -------------CccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHH
Confidence                         012233333211000     00111223467899999999999999999999999999988887777


Q ss_pred             cCCCCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHH
Q psy6874         320 VHIEPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGV  398 (504)
Q Consensus       320 ~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~  398 (504)
                      +++.++|++++.+|++|.+++.. ++.++..|+++++.+.......        ++.++++++|++.++|.++.++.+..
T Consensus       233 ~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~--------~~~l~~~~vt~~~~~p~~~~~l~~~~  304 (547)
T PRK13295        233 LGLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARA--------AELIRTEGVTFTMASTPFLTDLTRAV  304 (547)
T ss_pred             hCCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHH--------HHHHHHcCCcEEEecHHHHHHHHhcc
Confidence            88999999999999999998764 7789999999998764322221        33588999999999999998886532


Q ss_pred             HHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeee
Q psy6874         399 HEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQG  478 (504)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~  478 (504)
                      ...                                         ....++||.+++||+++++++.++++..+++++++.
T Consensus       305 ~~~-----------------------------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~  343 (547)
T PRK13295        305 KES-----------------------------------------GRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSA  343 (547)
T ss_pred             ccc-----------------------------------------CCCcccceEEEEecCCCCHHHHHHHHHHhCCCeEEe
Confidence            110                                         011268999999999999999999998889999999


Q ss_pred             ccccccccceeec
Q psy6874         479 YGLTETTSCATVM  491 (504)
Q Consensus       479 YG~TEt~~~~~~~  491 (504)
                      ||+||++..++..
T Consensus       344 YG~TE~~~~~~~~  356 (547)
T PRK13295        344 WGMTENGAVTLTK  356 (547)
T ss_pred             ccCCCCCCeeecc
Confidence            9999997654443

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=4.3e-39  Score=350.52  Aligned_cols=338  Identities=16%  Similarity=0.133  Sum_probs=246.0

Q ss_pred             ccccCCCCcH-HHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCC
Q psy6874          84 RLIRDGVDTM-EKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQE  162 (504)
Q Consensus        84 ~~~~~~~~tl-~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~  162 (504)
                      +|+..+..++ ..++++.+.++|+++|+.+++      +. .        ..++.+.+||+||.++++++|+.|+++|++
T Consensus       167 ~wf~g~~ln~~~~~l~~~~~~~pd~~Ai~~~~------e~-~--------~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~  231 (728)
T PLN03052        167 QWLPGAVLNVAECCLTPKPSKTDDSIAIIWRD------EG-S--------DDLPVNRMTLSELRSQVSRVANALDALGFE  231 (728)
T ss_pred             EECCCCEeEHHHHHHHHHhccCCCCeEEEEEC------CC-C--------CCCceEEeeHHHHHHHHHHHHHHHHHcCCC
Confidence            4533444555 346666656789999997643      00 0        012346899999999999999999999999


Q ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch------hHHHHHhhcCCCce
Q psy6874         163 PRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL------PKFRNILKLTPRVS  236 (504)
Q Consensus       163 ~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~l~  236 (504)
                      +||+|+++++|++|++++++||+++|++++|+++.++++++.+++++++++++|+++...      +....+.....  .
T Consensus       232 ~GdrVai~~pn~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~  309 (728)
T PLN03052        232 KGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--P  309 (728)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--C
Confidence            999999999999999999999999999999999999999999999999999999987532      11222221111  1


Q ss_pred             EEEEEcCCCCcccccccCCCceeeehhHHHhcccccC--CCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHH
Q psy6874         237 TLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESG--SRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLK  314 (504)
Q Consensus       237 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~  314 (504)
                      .++.+.......   ..........|++++.......  .........++++++|+|||||||.||||+++|.+++....
T Consensus       310 ~~iv~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~  386 (728)
T PLN03052        310 KAIVLPADGKSV---RVKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAA  386 (728)
T ss_pred             cEEEEeCCCCcc---ccccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHH
Confidence            233332210000   0000112346777665332110  01111223568999999999999999999999999877766


Q ss_pred             hhhhccCCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHH
Q psy6874         315 AFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRI  394 (504)
Q Consensus       315 ~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l  394 (504)
                      .....+++.++|+++.+.|++|+++...++.+|+.|+++++.+.......       .++.++++++|++.++|++++.+
T Consensus       387 ~~~~~~~l~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~-------~~~~i~~~~vT~l~~~Pt~l~~l  459 (728)
T PLN03052        387 DAWAHLDIRKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRG-------FAKFVQDAKVTMLGTVPSIVKTW  459 (728)
T ss_pred             HHHHhcCCCCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCCh-------HHHHHHHHCCCEEEECHHHHHHH
Confidence            55555788999999999999999998777899999999999864322111       23458899999999999999887


Q ss_pred             HHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhC-C
Q psy6874         395 YKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLC-E  473 (504)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~-~  473 (504)
                      .+...                                 .        +....++||.+++||++++++...++...++ +
T Consensus       460 ~~~~~---------------------------------~--------~~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~  498 (728)
T PLN03052        460 KNTNC---------------------------------M--------AGLDWSSIRCFGSTGEASSVDDYLWLMSRAGYK  498 (728)
T ss_pred             HhcCC---------------------------------c--------ccCChhheeEEEecCCCCCHHHHHHHHHhcCCC
Confidence            65210                                 0        0111268999999999999999888877765 5


Q ss_pred             ceeeecccccccccee
Q psy6874         474 KVIQGYGLTETTSCAT  489 (504)
Q Consensus       474 ~v~~~YG~TEt~~~~~  489 (504)
                      ++.+.||+||+++...
T Consensus       499 ~i~~~yG~TE~~~~~~  514 (728)
T PLN03052        499 PIIEYCGGTELGGGFV  514 (728)
T ss_pred             CeEeeccChhhCcccc
Confidence            8999999999976443

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.3e-39  Score=346.72  Aligned_cols=331  Identities=21%  Similarity=0.216  Sum_probs=251.7

Q ss_pred             HHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcC
Q psy6874          93 MEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAE  172 (504)
Q Consensus        93 l~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~  172 (504)
                      ..++++++++++|+++|+.+.+      +           ..++.+.+||+||.++++++|++|+++|+++||+|+++++
T Consensus        69 ~~~~l~~~~~~~p~~~Al~~~~------~-----------~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~  131 (637)
T PRK00174         69 SYNCLDRHLKTRGDKVAIIWEG------D-----------DPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMP  131 (637)
T ss_pred             HHHHHHHhhccCCCCeEEEEEC------C-----------CCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcC
Confidence            4677888888999999997532      0           0123468999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch---------hHHHHHhhcCCCceEEEEEcC
Q psy6874         173 TRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL---------PKFRNILKLTPRVSTLIYMED  243 (504)
Q Consensus       173 n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~l~~ii~~~~  243 (504)
                      |+++++++++||+++|++++|+++.++.+++.+++++++++++|++++..         +.+.+.....+.++.++..+.
T Consensus       132 n~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (637)
T PRK00174        132 MIPEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRR  211 (637)
T ss_pred             CCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcC
Confidence            99999999999999999999999999999999999999999999987532         334444445566777776654


Q ss_pred             CCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHh-hhhccCC
Q psy6874         244 QLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKA-FSDAVHI  322 (504)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~  322 (504)
                      ......+    .......++++......   ..+.....++|+++|+|||||||.||||+++|.+++..... ....+++
T Consensus       212 ~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~  284 (637)
T PRK00174        212 TGGDVDW----VEGRDLWWHELVAGASD---ECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDY  284 (637)
T ss_pred             CCCCcCc----CCCCcccHHHHHhhcCC---CCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCC
Confidence            2111111    01123456666543221   22233456789999999999999999999999998755433 3345688


Q ss_pred             CCCcEEEEecChHHHHHHH-HHHHHHHhCCeEEEcCccc-cccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHH
Q psy6874         323 EPNDVFLGYLPLAHVFELL-SESVCLLCGVAIGYSTPLT-MIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHE  400 (504)
Q Consensus       323 ~~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~-~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~  400 (504)
                      .++|++++..|++|+.+.. ..+.+|+.|+++++.+... ..+....     ++.++++++|++.++|++++.+.+....
T Consensus       285 ~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~-----~~~i~~~~vt~~~~~P~~~~~l~~~~~~  359 (637)
T PRK00174        285 KDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRF-----WEVIDKHKVTIFYTAPTAIRALMKEGDE  359 (637)
T ss_pred             CCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHH-----HHHHHhcCCeEEeecHHHHHHHHhcCCc
Confidence            8899999999999999876 4778999999999875322 1122111     3458899999999999999888663110


Q ss_pred             HHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhC---Cceee
Q psy6874         401 KVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLC---EKVIQ  477 (504)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~  477 (504)
                      .                                       ......++||.+++||+++++++.++++..++   +++++
T Consensus       360 ~---------------------------------------~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~  400 (637)
T PRK00174        360 H---------------------------------------PKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVD  400 (637)
T ss_pred             c---------------------------------------cccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEe
Confidence            0                                       00111268999999999999999999998886   78999


Q ss_pred             eccccccccceeec
Q psy6874         478 GYGLTETTSCATVM  491 (504)
Q Consensus       478 ~YG~TEt~~~~~~~  491 (504)
                      .||+||+++.++..
T Consensus       401 ~YG~TE~~~~~~~~  414 (637)
T PRK00174        401 TWWQTETGGIMITP  414 (637)
T ss_pred             cccccccCCceEec
Confidence            99999998765443

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.7e-39  Score=346.16  Aligned_cols=337  Identities=18%  Similarity=0.205  Sum_probs=248.7

Q ss_pred             ccccCCCCcH-HHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCC
Q psy6874          84 RLIRDGVDTM-EKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQE  162 (504)
Q Consensus        84 ~~~~~~~~tl-~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~  162 (504)
                      +|+..+..|+ .++++++++.+|+++|+.+..     +            ..++.+.+||+||.++++++|++|+++|++
T Consensus        45 ~wf~~~~~n~~~~~l~~~~~~~p~~~A~~~~~-----~------------~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~  107 (629)
T PRK10524         45 RWFVGGRTNLCHNAVDRHLAKRPEQLALIAVS-----T------------ETDEERTYTFRQLHDEVNRMAAMLRSLGVQ  107 (629)
T ss_pred             ccCCCcEeeHHHHHHHHhhccCCCCeEEEEEc-----C------------CCCceEEEeHHHHHHHHHHHHHHHHHcCCC
Confidence            4534444444 778888888899999996431     0            013346899999999999999999999999


Q ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCc---------hhHHHHHhhcC-
Q psy6874         163 PRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDL---------LPKFRNILKLT-  232 (504)
Q Consensus       163 ~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~-  232 (504)
                      +||+|+++++|++|++++++||+++|++++|+++.++.+++.+++++++++++|+++..         .+.+.++.... 
T Consensus       108 ~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (629)
T PRK10524        108 RGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQ  187 (629)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999997642         23344443322 


Q ss_pred             CCceEEEEEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHH
Q psy6874         233 PRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST  312 (504)
Q Consensus       233 ~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~  312 (504)
                      +....++.++........    .......++++.......  ..+.....++++++|+|||||||.||||+++|.++...
T Consensus       188 ~~~~~vi~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~  261 (629)
T PRK10524        188 HKPRHVLLVDRGLAPMAR----VAGRDVDYATLRAQHLGA--RVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVA  261 (629)
T ss_pred             CCCCEEEEEeCCCCCcCc----ccCCcccHHHHHhcCCCC--CCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHH
Confidence            334566665532111000    011123466654432211  12222346789999999999999999999999997544


Q ss_pred             HH-hhhhccCCCCCcEEEEecChHHHHHHH-HHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHH
Q psy6874         313 LK-AFSDAVHIEPNDVFLGYLPLAHVFELL-SESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLI  390 (504)
Q Consensus       313 ~~-~~~~~~~~~~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~  390 (504)
                      .. .....+++.++|++++..|+.|+.+.. .++.+++.|+++++.+..........    .++.++++++|++.++|++
T Consensus       262 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~----~~~~i~~~~vt~~~~~P~~  337 (629)
T PRK10524        262 LATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGI----WWRIVEKYKVNRMFSAPTA  337 (629)
T ss_pred             HHHHHHHhcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHH----HHHHHHHcCceEEEeCHHH
Confidence            43 334456788999999999999988865 46789999999998764322211111    1345889999999999999


Q ss_pred             HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHH
Q psy6874         391 LDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVC  470 (504)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~  470 (504)
                      +..+.+.....                                       .+....++||.+++||+++++++.++++..
T Consensus       338 ~~~l~~~~~~~---------------------------------------~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~  378 (629)
T PRK10524        338 IRVLKKQDPAL---------------------------------------LRKHDLSSLRALFLAGEPLDEPTASWISEA  378 (629)
T ss_pred             HHHHHhcCccc---------------------------------------ccccChhheeEEEEeCCCCCHHHHHHHHHh
Confidence            98875521000                                       001112689999999999999999999999


Q ss_pred             hCCceeeecccccccc
Q psy6874         471 LCEKVIQGYGLTETTS  486 (504)
Q Consensus       471 ~~~~v~~~YG~TEt~~  486 (504)
                      +++++++.||+||++.
T Consensus       379 ~~~~v~~~YG~TE~~~  394 (629)
T PRK10524        379 LGVPVIDNYWQTETGW  394 (629)
T ss_pred             cCCCeEeccccccccc
Confidence            9999999999999974

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=1.3e-38  Score=336.39  Aligned_cols=316  Identities=23%  Similarity=0.318  Sum_probs=256.0

Q ss_pred             cHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEc
Q psy6874          92 TMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFA  171 (504)
Q Consensus        92 tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~  171 (504)
                      ++.++|++.++++|+++|+.+.                       .+++||+|+.++++++++.|++.|+++|++|++++
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~~-----------------------~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~   57 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVHH-----------------------DRTLTYAALSERVLALASGLRGLGLARGERVAIYL   57 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEEC-----------------------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence            3678999999999999998632                       15799999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccccc
Q psy6874         172 ETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT  251 (504)
Q Consensus       172 ~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~  251 (504)
                      +|+++++++++||+++|++++|+++.++.+++.++++.+++++++++.+..+.+......++.+..++.++.....    
T Consensus        58 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  133 (515)
T TIGR03098        58 DKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHA----  133 (515)
T ss_pred             CCCHHHHHHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccc----
Confidence            9999999999999999999999999999999999999999999999987766665555556666667766543110    


Q ss_pred             ccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEEe
Q psy6874         252 NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGY  331 (504)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~  331 (504)
                       .........|+++......    ........+++++++|||||||.||||.+||.++...+......+.+.++|++++.
T Consensus       134 -~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~  208 (515)
T TIGR03098       134 -SEGGGESPSWPKLLALGDA----DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAV  208 (515)
T ss_pred             -cCCccccccHHHhhccccc----cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEE
Confidence             0112234456666543221    12223456899999999999999999999999999988887777788999999999


Q ss_pred             cChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHH
Q psy6874         332 LPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRA  411 (504)
Q Consensus       332 lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~  411 (504)
                      +|++|.+++...+.++..|+++++.+.......        .+.+++++||++.++|.++..+.+...            
T Consensus       209 ~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~------------  268 (515)
T TIGR03098       209 LPLSFDYGFNQLTTAFYVGATVVLHDYLLPRDV--------LKALEKHGITGLAAVPPLWAQLAQLDW------------  268 (515)
T ss_pred             CchhhHhHHHHHHHHHHcCCEEEEcCCCCHHHH--------HHHHHHcCCceEecChHHHHHHHhccc------------
Confidence            999999999888899999999998765432222        335889999999999999988754200            


Q ss_pred             HHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeecccccccccee
Q psy6874         412 LFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTSCAT  489 (504)
Q Consensus       412 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~~~~  489 (504)
                                                    ......++|.+++||+++++++.+.++..+ ++++++.||+||++....
T Consensus       269 ------------------------------~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~  317 (515)
T TIGR03098       269 ------------------------------PESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTY  317 (515)
T ss_pred             ------------------------------CCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEe
Confidence                                          001125899999999999999999999888 789999999999865443

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-38  Score=336.05  Aligned_cols=333  Identities=21%  Similarity=0.286  Sum_probs=268.6

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..++.+.|++.++.+|+++|+.+.                       .+.+||+||.+.+.++|+.|.+.|+++||+|++
T Consensus         4 ~~~i~~~l~~~~~~~~~~~a~~~~-----------------------~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l   60 (513)
T PRK07656          4 WMTLPELLARAARRFGDKEAYVFG-----------------------DQRLTYAELNARVRRAAAALAALGIGKGDRVAI   60 (513)
T ss_pred             cccHHHHHHHHHHHCCCCeEEEeC-----------------------CCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            467999999999999999999631                       257999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD  249 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~  249 (504)
                      +++|+++++++++||++.|++++|++++++.+++.++++.+++++++++++............+.++.++......... 
T Consensus        61 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  139 (513)
T PRK07656         61 WAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDP-  139 (513)
T ss_pred             ECCCChHHHHHHHHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCccccc-
Confidence            9999999999999999999999999999999999999999999999999887776666555566677776654431110 


Q ss_pred             ccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEE
Q psy6874         250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFL  329 (504)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l  329 (504)
                           ......+|+++......   ........++++++++|||||||.||+|.++|.++...+......+.+.++|+++
T Consensus       140 -----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~  211 (513)
T PRK07656        140 -----HTEKMKTFTDFLAAGDP---AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYL  211 (513)
T ss_pred             -----CccccccHHHHHhcCCC---CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEE
Confidence                 01133567776654322   1223345778999999999999999999999999999888888888999999999


Q ss_pred             EecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChH
Q psy6874         330 GYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPF  408 (504)
Q Consensus       330 ~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~  408 (504)
                      +.+|++|.+++.. .+.++..|+++++.........        ++.+++++||++.++|.++..+.+.....       
T Consensus       212 ~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~--------~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-------  276 (513)
T PRK07656        212 AANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEV--------FRLIETERITVLPGPPTMYNSLLQHPDRS-------  276 (513)
T ss_pred             EccchHHHHHHHHHHHHHHHcCceEEecCcCCHHHH--------HHHHHHhCCeEEechHHHHHHHHcCCCcC-------
Confidence            9999999999875 7789999999988654322222        33588999999999999999987632110       


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCC-ceeeeccccccccc
Q psy6874         409 KRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCE-KVIQGYGLTETTSC  487 (504)
Q Consensus       409 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~~YG~TEt~~~  487 (504)
                                                        ....+++|.+++||+++++++.+.++..+++ ++++.||+||+++.
T Consensus       277 ----------------------------------~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~  322 (513)
T PRK07656        277 ----------------------------------AEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGV  322 (513)
T ss_pred             ----------------------------------CCCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCc
Confidence                                              0012689999999999999999999998998 99999999999887


Q ss_pred             eeecccCCCCC--ccCCC
Q psy6874         488 ATVMHLNDMGN--INSNG  503 (504)
Q Consensus       488 ~~~~~~~d~~~--~~s~G  503 (504)
                      ++.+..+....  .+++|
T Consensus       323 ~~~~~~~~~~~~~~~~vG  340 (513)
T PRK07656        323 TTFNRLDDDRKTVAGTIG  340 (513)
T ss_pred             eeecCccccccccCCCcc
Confidence            77665443222  34555

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=3.3e-39  Score=331.88  Aligned_cols=325  Identities=28%  Similarity=0.464  Sum_probs=241.2

Q ss_pred             HHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHH
Q psy6874          97 LRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAE  176 (504)
Q Consensus        97 ~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e  176 (504)
                      |+++++++||++|+.+                      ++.+++||+|++++++++|..|.++|+++|++|+++++|+++
T Consensus         1 f~~~a~~~pd~~a~~~----------------------~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~   58 (417)
T PF00501_consen    1 FERQAQRYPDRIALID----------------------DEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIE   58 (417)
T ss_dssp             HHHHHHHSTTSEEEEE----------------------TTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHH
T ss_pred             ChhHHhhCCCceEEEE----------------------CCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccce
Confidence            6889999999999963                      244789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEE----cCCchhHHHHHhhcCCCceEEEEEcCCCCcccccc
Q psy6874         177 WMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVIT----THDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTN  252 (504)
Q Consensus       177 ~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~----~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~  252 (504)
                      ++++++||+++|++++|+++.++.+++.+++++++++++|+    +......+............++.++...       
T Consensus        59 ~~~~~~A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  131 (417)
T PF00501_consen   59 FVVAFLACLRAGAIPVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDD-------  131 (417)
T ss_dssp             HHHHHHHHHHTT-EEEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSS-------
T ss_pred             eeeeecccccccccccccccccccccccccccccceeEEEEeccccccccccchhhhcccccccccccccccc-------
Confidence            99999999999999999999999999999999999999997    2222223333333333445555555330       


Q ss_pred             cCCCceeeehhHHHhcccccCCCCCCCC-CCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhh--hccCCCCCcEEE
Q psy6874         253 FKQGIEIVPFKQIVKRGSESGSRYEGSP-PTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS--DAVHIEPNDVFL  329 (504)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~--~~~~~~~~d~~l  329 (504)
                            ....+.+.......  ... .+ ..++++++++|||||||.||+|.++|+++.+.+..+.  ...+++  |+++
T Consensus       132 ------~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l  200 (417)
T PF00501_consen  132 ------LPKKEALKSASLSD--EPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRIL  200 (417)
T ss_dssp             ------CTTCHHHHHHHHCH--CSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEE
T ss_pred             ------cccccccccccccc--ccc-cCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEE
Confidence                  00001111111000  000 00 0569999999999999999999999999999988764  222333  6999


Q ss_pred             EecChHHHHHH-HHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChH
Q psy6874         330 GYLPLAHVFEL-LSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPF  408 (504)
Q Consensus       330 ~~lPl~h~~~~-~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~  408 (504)
                      +++|++|++++ ...+.+++.|+++++.+.....+...     .+..+++++||++.++|.++..+.+....+ ..    
T Consensus       201 ~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~-----~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~~----  270 (417)
T PF00501_consen  201 SFLPLSHIFGLISALLAALFSGATLVLPSPFDLFDPES-----LLELISRYKPTILFAVPSMLEALLQSPEEK-TK----  270 (417)
T ss_dssp             ESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHHHHH-----HHHHHHHHTESEEEEEHHHHHHHHHHHHTT-HH----
T ss_pred             eecccccccccccccccccccccccccccccccccccc-----chhccccccccccccccccccccccccccc-cc----
Confidence            99999999999 67889999999999998766522111     133588999999999999999997632111 00    


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCC-ceeeeccccccccc
Q psy6874         409 KRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCE-KVIQGYGLTETTSC  487 (504)
Q Consensus       409 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~~YG~TEt~~~  487 (504)
                                                      ......+++|.+++||+++++++.+++++.++. ++++.||+||+++.
T Consensus       271 --------------------------------~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~  318 (417)
T PF00501_consen  271 --------------------------------ISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSI  318 (417)
T ss_dssp             --------------------------------GTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSE
T ss_pred             --------------------------------ccccccccccccccccccCChhhccccccccccccceeccccccccee
Confidence                                            000112579999999999999999999999987 99999999999888


Q ss_pred             eeecc-cCCCCCccCCC
Q psy6874         488 ATVMH-LNDMGNINSNG  503 (504)
Q Consensus       488 ~~~~~-~~d~~~~~s~G  503 (504)
                      ++..+ ..+....+++|
T Consensus       319 ~~~~~~~~~~~~~~~~G  335 (417)
T PF00501_consen  319 ATIRPPEDDIEKPGSVG  335 (417)
T ss_dssp             EEEEETTTHHSSTTSEB
T ss_pred             eeccccccccccccccc
Confidence            77653 33333455555

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.3e-39  Score=341.68  Aligned_cols=335  Identities=20%  Similarity=0.226  Sum_probs=258.4

Q ss_pred             CcHHHHHHHHHH-hCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          91 DTMEKVLRYVVT-RFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        91 ~tl~~~~~~~~~-~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ....+++++++. .+|+++|+.+.+                   .+..+.+||+|+.++++++|++|.++|+++||+|++
T Consensus        43 ~~~~~~~~~~~~~~~~~~~a~~~~~-------------------~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i  103 (570)
T PRK04319         43 NIAYEAIDRHADGGRKDKVALRYLD-------------------ASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFI  103 (570)
T ss_pred             eHHHHHHHHhhccCCCCceEEEEEC-------------------CCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence            345578887776 579999996532                   012357999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD  249 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~  249 (504)
                      +++|+++|+++++||+++|++++|+++.++++++.+++++++++++|++.........  ...+.++.++.++....   
T Consensus       104 ~~~n~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---  178 (570)
T PRK04319        104 FMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--DDLPSLKHVLLVGEDVE---  178 (570)
T ss_pred             ECCCCHHHHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--hcCCCceEEEEECCCcC---
Confidence            9999999999999999999999999999999999999999999999999876543321  24556667776654310   


Q ss_pred             ccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEE
Q psy6874         250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFL  329 (504)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l  329 (504)
                           .......+.++......   .....+..++++++++|||||||.||||+++|.++++++......+++.++|+++
T Consensus       179 -----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~  250 (570)
T PRK04319        179 -----EGPGTLDFNALMEQASD---EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYW  250 (570)
T ss_pred             -----CCcCccCHHHHHhhcCC---cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEE
Confidence                 01123456666543322   2222345678999999999999999999999999999888777778899999999


Q ss_pred             EecChHHHHHHH-HHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChH
Q psy6874         330 GYLPLAHVFELL-SESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPF  408 (504)
Q Consensus       330 ~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~  408 (504)
                      +..|++|.++.. ..+.++..|+++++.....  +...     .+..++++++|++.++|.++..+.+...+..      
T Consensus       251 ~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~--~~~~-----~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------  317 (570)
T PRK04319        251 CTADPGWVTGTSYGIFAPWLNGATNVIDGGRF--SPER-----WYRILEDYKVTVWYTAPTAIRMLMGAGDDLV------  317 (570)
T ss_pred             ecCChHHhhCchHHHHHHHhcCceEEEECCCC--CHHH-----HHHHHHHcCCeEEEeCHHHHHHHHhcCCccc------
Confidence            999999998876 4778999999998864321  1111     1345889999999999999998865211000      


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccce
Q psy6874         409 KRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCA  488 (504)
Q Consensus       409 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~  488 (504)
                                                       .....++||.+++||+++++++.++++..+|.++++.||+||+++.+
T Consensus       318 ---------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~  364 (570)
T PRK04319        318 ---------------------------------KKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIM  364 (570)
T ss_pred             ---------------------------------ccCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEE
Confidence                                             00112689999999999999999999998999999999999998765


Q ss_pred             eecccCCCCCccCCC
Q psy6874         489 TVMHLNDMGNINSNG  503 (504)
Q Consensus       489 ~~~~~~d~~~~~s~G  503 (504)
                      +.....+...++++|
T Consensus       365 ~~~~~~~~~~~~~~G  379 (570)
T PRK04319        365 IANYPAMDIKPGSMG  379 (570)
T ss_pred             EecCCCCCCCCCcCc
Confidence            554433333455555

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.2e-38  Score=337.17  Aligned_cols=326  Identities=21%  Similarity=0.265  Sum_probs=255.9

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCeEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSL-GQEPRHNVV  168 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gv~~gd~Va  168 (504)
                      ..|+.++|.+.++++|+++|+.+.+                       +.+||+||.++++++++.|.+. |+++||+|+
T Consensus         9 ~~tl~~~l~~~a~~~~~~~a~~~~~-----------------------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~   65 (546)
T PRK08314          9 ETSLFHNLEVSARRYPDKTAIVFYG-----------------------RAISYRELLEEAERLAGYLQQECGVRKGDRVL   65 (546)
T ss_pred             CCCHHHHHHHHHHHcCCCcceeecC-----------------------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEE
Confidence            4579999999999999999996421                       5799999999999999999998 999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCC--C
Q psy6874         169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQL--T  246 (504)
Q Consensus       169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~--~  246 (504)
                      ++++|+++|+++++||++.|++++|+++.++.+++.++++.+++++++++++..+.+....... .++.++......  .
T Consensus        66 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  144 (546)
T PRK08314         66 LYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL-RLRHVIVAQYSDYLP  144 (546)
T ss_pred             EECCCChHHHHHHHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc-CcceEEEecchhhcc
Confidence            9999999999999999999999999999999999999999999999999988776665543332 234444332110  0


Q ss_pred             c------ccccc------cCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHH
Q psy6874         247 S------TDTTN------FKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLK  314 (504)
Q Consensus       247 ~------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~  314 (504)
                      .      ..+..      ...+..+..|++......    ........++++++|+|||||||.||||+++|.++++++.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~  220 (546)
T PRK08314        145 AEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGL----APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAV  220 (546)
T ss_pred             cccccCcccccccccccccccccccccHHHHhcccC----CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHH
Confidence            0      00000      001123445666554321    1223345678999999999999999999999999999988


Q ss_pred             hhhhccCCCCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHH
Q psy6874         315 AFSDAVHIEPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDR  393 (504)
Q Consensus       315 ~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~  393 (504)
                      .....+.+.++|++++++|++|.+++.. ++.++..|+++++.+.......        +..++++++|++.++|.++..
T Consensus       221 ~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~--------~~~i~~~~~t~~~~~p~~~~~  292 (546)
T PRK08314        221 GSVLWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAA--------ARLIERYRVTHWTNIPTMVVD  292 (546)
T ss_pred             HHHHhhCCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHH--------HHHHHHhcCceecccHHHHHH
Confidence            8877788899999999999999999874 6789999999999865322221        335889999999999999888


Q ss_pred             HHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCC
Q psy6874         394 IYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCE  473 (504)
Q Consensus       394 l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~  473 (504)
                      +.....                                 .+        ....+++|.+++||+++++++.+++...+++
T Consensus       293 ll~~~~---------------------------------~~--------~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~  331 (546)
T PRK08314        293 FLASPG---------------------------------LA--------ERDLSSLRYIGGGGAAMPEAVAERLKELTGL  331 (546)
T ss_pred             HHhCCC---------------------------------cc--------ccCchhhheeeeccccCCHHHHHHHHHHcCC
Confidence            764200                                 00        0111579999999999999999999998999


Q ss_pred             ceeeeccccccccceeecc
Q psy6874         474 KVIQGYGLTETTSCATVMH  492 (504)
Q Consensus       474 ~v~~~YG~TEt~~~~~~~~  492 (504)
                      +++++||+||++...+...
T Consensus       332 ~~~~~YG~tE~~~~~~~~~  350 (546)
T PRK08314        332 DYVEGYGLTETMAQTHSNP  350 (546)
T ss_pred             cEEecccccccccceecCC
Confidence            9999999999986655443

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.4e-38  Score=336.20  Aligned_cols=334  Identities=20%  Similarity=0.289  Sum_probs=264.1

Q ss_pred             cCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCC
Q psy6874          87 RDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRS-LGQEPRH  165 (504)
Q Consensus        87 ~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gv~~gd  165 (504)
                      .....|+.+++++++..+|+++|+.+-                    .++++.+||+|+.++++++|++|.+ .|+++||
T Consensus         6 ~~~~~~~~~~l~~~a~~~~~~~a~~~~--------------------~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd   65 (576)
T PRK05620          6 QDVPLSLTRILEYGSTVHGDTTVTTWG--------------------GAEQEQTTFAAIGARAAALAHALHDELGITGDQ   65 (576)
T ss_pred             hcCCCcHHHHHHHHHHhCCCceEEEEc--------------------CCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            344568999999999999999998531                    1234789999999999999999986 7999999


Q ss_pred             eEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCC
Q psy6874         166 NVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQL  245 (504)
Q Consensus       166 ~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~  245 (504)
                      +|+++++|+++++++++||.++|+++++++++++.+++.++++.++++++|++++..+.+.++....+.++.++..+...
T Consensus        66 ~V~~~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  145 (576)
T PRK05620         66 RVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSD  145 (576)
T ss_pred             EEEEEeCCCHHHHHHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcc
Confidence            99999999999999999999999999999999999999999999999999999888777777766677777777665321


Q ss_pred             CcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhh--hhccCCC
Q psy6874         246 TSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAF--SDAVHIE  323 (504)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~  323 (504)
                      ........+....+.+|+++.+....   ........++++++++|||||||.||||+++|.++.......  ...+.+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~  222 (576)
T PRK05620        146 ADSAAAHMPEGIKVYSYEALLDGRST---VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVT  222 (576)
T ss_pred             cccchhccccccccccHHHHhhcCCC---cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCC
Confidence            11111122334456778888764322   122234567899999999999999999999999986654432  2346788


Q ss_pred             CCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHh
Q psy6874         324 PNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVS  403 (504)
Q Consensus       324 ~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~  403 (504)
                      .+|++++.+|++|.+++...+.++..|+++++.+...  +....     ++.+++++||++.++|.++..+........ 
T Consensus       223 ~~~~~l~~~pl~h~~g~~~~~~~l~~g~~~~~~~~~~--~~~~~-----~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-  294 (576)
T PRK05620        223 HGESFLCCVPIYHVLSWGVPLAAFMSGTPLVFPGPDL--SAPTL-----AKIIATAMPRVAHGVPTLWIQLMVHYLKNP-  294 (576)
T ss_pred             CCCeEEEeCChHHhhhhHHHHHHHhcCceEEecCCCC--CHHHH-----HHHHHHhcCceeeecCHHHHHHHHHhhccC-
Confidence            8999999999999999888888999999998865321  11111     345889999999999999988765321100 


Q ss_pred             ccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccc
Q psy6874         404 RASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTE  483 (504)
Q Consensus       404 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE  483 (504)
                                                              ....++|.+++||+++++++.+.++..+++++++.||+||
T Consensus       295 ----------------------------------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE  334 (576)
T PRK05620        295 ----------------------------------------PERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTE  334 (576)
T ss_pred             ----------------------------------------cccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccc
Confidence                                                    0013799999999999999999999888999999999999


Q ss_pred             cccceeec
Q psy6874         484 TTSCATVM  491 (504)
Q Consensus       484 t~~~~~~~  491 (504)
                      ++..+++.
T Consensus       335 ~~~~~~~~  342 (576)
T PRK05620        335 TSPVGTVA  342 (576)
T ss_pred             cccceeee
Confidence            98765554

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.9e-38  Score=343.02  Aligned_cols=336  Identities=18%  Similarity=0.173  Sum_probs=249.9

Q ss_pred             cccccCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCC
Q psy6874          83 IRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQE  162 (504)
Q Consensus        83 ~~~~~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~  162 (504)
                      .+|+..+..++.+.+.+.  .+|+++|+.+..                  ..++.+.+||+||.++++++|+.|+++|++
T Consensus        78 ~~wf~~~~~n~~~~~~~~--~~~~~~Al~~~~------------------~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~  137 (655)
T PRK03584         78 ARWFPGARLNYAENLLRH--RRDDRPAIIFRG------------------EDGPRRELSWAELRRQVAALAAALRALGVG  137 (655)
T ss_pred             CeeCCCCEeeHHHHhhcc--CCCCCeEEEEEC------------------CCCceEEEeHHHHHHHHHHHHHHHHHcCCC
Confidence            456455566665554432  589999997532                  123457899999999999999999999999


Q ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCc---------hhHHHHHhhcCC
Q psy6874         163 PRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDL---------LPKFRNILKLTP  233 (504)
Q Consensus       163 ~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~  233 (504)
                      +||+|+++++|++|++++++||+++|++++|+++.++.+++.+++++++++++|++++.         .+.+.++....+
T Consensus       138 ~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (655)
T PRK03584        138 PGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALP  217 (655)
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999998753         234555555666


Q ss_pred             CceEEEEEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHH-
Q psy6874         234 RVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST-  312 (504)
Q Consensus       234 ~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~-  312 (504)
                      .++.++.++......   ..........|+++.......  .........+++++|+|||||||.||||+++|.+++.+ 
T Consensus       218 ~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~  292 (655)
T PRK03584        218 SLEHVVVVPYLGPAA---AAAALPGALLWEDFLAPAEAA--ELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEH  292 (655)
T ss_pred             CccEEEEEecCCCcc---cccccCCcccHHHHhhccccC--CCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHH
Confidence            666777665321000   000112345677765422111  22233456799999999999999999999999987643 


Q ss_pred             HHhhhhccCCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCcccc-ccchhhhccCCcccccccCCcEEEeccHHH
Q psy6874         313 LKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTM-IDTSSKIKRGTKGDASVLHPTALTAVPLIL  391 (504)
Q Consensus       313 ~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~-~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~  391 (504)
                      .......+++.++|+++++.|+.|+... ..+.+|+.|+++++.+.... .+....     ++.++++++|++.++|+++
T Consensus       293 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~-----~~~i~~~~vt~~~~~P~~~  366 (655)
T PRK03584        293 LKELGLHCDLGPGDRFFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVL-----WDLAAEEGVTVFGTSAKYL  366 (655)
T ss_pred             HHHHHHhcCCCCCCEEEEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHH-----HHHHHHHCCEEEEcCHHHH
Confidence            5555566788999999999999987643 35689999999998754322 222211     3458899999999999999


Q ss_pred             HHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh
Q psy6874         392 DRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL  471 (504)
Q Consensus       392 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~  471 (504)
                      ..+.+....                              +         ......++||.+++||+++++++.+++...+
T Consensus       367 ~~l~~~~~~------------------------------~---------~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~  407 (655)
T PRK03584        367 DACEKAGLV------------------------------P---------GETHDLSALRTIGSTGSPLPPEGFDWVYEHV  407 (655)
T ss_pred             HHHHhcCCC------------------------------c---------cccCChhheEEEEEecCCCCHHHHHHHHHHh
Confidence            887642100                              0         0001126899999999999999999999887


Q ss_pred             --CCceeeeccccccccce
Q psy6874         472 --CEKVIQGYGLTETTSCA  488 (504)
Q Consensus       472 --~~~v~~~YG~TEt~~~~  488 (504)
                        ++++.+.||+||+++..
T Consensus       408 ~~~~~~~~~yG~TE~~~~~  426 (655)
T PRK03584        408 KADVWLASISGGTDICSCF  426 (655)
T ss_pred             CCCceEEeccChHhhhccc
Confidence              47899999999986543

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=7.5e-39  Score=350.70  Aligned_cols=327  Identities=20%  Similarity=0.263  Sum_probs=242.8

Q ss_pred             CCcHHHHHHHHHHhCCC-CcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEE
Q psy6874          90 VDTMEKVLRYVVTRFSD-QRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVV  168 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~-~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Va  168 (504)
                      ..|+.++|++.++++|+ ++|+..                      ++++++||+|+.++++++|++|.+. +++||+|+
T Consensus       203 ~~t~~~~l~~~~~~~p~~~~a~~~----------------------~~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Va  259 (718)
T PRK08043        203 RETLYEALLSAQYRYGAGKPCIED----------------------VNFTPDSYRKLLKKTLFVGRILEKY-SVEGERIG  259 (718)
T ss_pred             CCCHHHHHHHHHHHhCCCCcceEc----------------------CCCCcccHHHHHHHHHHHHHHHHHh-cCCCceEE
Confidence            46899999999999998 577631                      1235799999999999999999887 59999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHH--HHhhcCCCceEEEEEcCCCC
Q psy6874         169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFR--NILKLTPRVSTLIYMEDQLT  246 (504)
Q Consensus       169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~--~~~~~~~~l~~ii~~~~~~~  246 (504)
                      ++++|++||+++++||+++|++++|+|++++++++.+++++++++++|++++..+...  ......+.++. +.+++.  
T Consensus       260 l~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~--  336 (718)
T PRK08043        260 LMLPNATISAAVIFGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRW-VYLEDL--  336 (718)
T ss_pred             EEcCCcHHHHHHHHHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccE-EEhhhh--
Confidence            9999999999999999999999999999999999999999999999999876543210  01111122222 222211  


Q ss_pred             cccccccCCCceeeehhHH-HhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCC
Q psy6874         247 STDTTNFKQGIEIVPFKQI-VKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPN  325 (504)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~  325 (504)
                      . .      .   ..+.+. .................++|+++++|||||||.||||++||.|+.+.+......+++.++
T Consensus       337 ~-~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~  406 (718)
T PRK08043        337 K-D------D---VTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPN  406 (718)
T ss_pred             h-h------h---cchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCcc
Confidence            0 0      0   011110 000000000111123467899999999999999999999999999988887777789999


Q ss_pred             cEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhc
Q psy6874         326 DVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSR  404 (504)
Q Consensus       326 d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~  404 (504)
                      |++++.+|++|++++.. .+.++..|+++++.+.......       ..+.++++++|++.++|+++..+.+..      
T Consensus       407 d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~-------~~~~i~~~~vt~~~~~p~~~~~l~~~~------  473 (718)
T PRK08043        407 DRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRI-------VPELVYDRNCTVLFGTSTFLGNYARFA------  473 (718)
T ss_pred             CeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCcccHHH-------HHHHHHhcCCeEEEchHHHHHHhhhhc------
Confidence            99999999999999875 6789999999998753211111       123478899999999999887654310      


Q ss_pred             cChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccccc
Q psy6874         405 ASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTET  484 (504)
Q Consensus       405 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt  484 (504)
                                                           .....++||.+++||+++++++.+.++..+|++++++||+||+
T Consensus       474 -------------------------------------~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~  516 (718)
T PRK08043        474 -------------------------------------NPYDFARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTEC  516 (718)
T ss_pred             -------------------------------------CcccccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccc
Confidence                                                 0001268999999999999999999998899999999999999


Q ss_pred             ccceeecccCCCCCccCCC
Q psy6874         485 TSCATVMHLNDMGNINSNG  503 (504)
Q Consensus       485 ~~~~~~~~~~d~~~~~s~G  503 (504)
                      ++.++.....+ ...+++|
T Consensus       517 ~~~~~~~~~~~-~~~~svG  534 (718)
T PRK08043        517 APVVSINVPMA-AKPGTVG  534 (718)
T ss_pred             cceEEecCCcc-cCCCCCC
Confidence            87666543322 3455666

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=4.3e-38  Score=336.73  Aligned_cols=321  Identities=19%  Similarity=0.196  Sum_probs=244.0

Q ss_pred             CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Q psy6874          91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIF  170 (504)
Q Consensus        91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~  170 (504)
                      .|..+++.+.++.+|+++|+...                       ...+||+||.++++++|++|.++|+++||+|+|+
T Consensus        14 ~~~~~~l~~~~~~~p~~~Al~~~-----------------------~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~   70 (579)
T PLN03102         14 LTPITFLKRASECYPNRTSIIYG-----------------------KTRFTWPQTYDRCCRLAASLISLNITKNDVVSVL   70 (579)
T ss_pred             ccHHHHHHHHHHhCCCCeEEEEC-----------------------CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            46888999999999999999631                       1479999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCc-----eEEEEEcCCC
Q psy6874         171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRV-----STLIYMEDQL  245 (504)
Q Consensus       171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l-----~~ii~~~~~~  245 (504)
                      ++|+++|+++++||+++|++++|+++.++.+++.++|+.++++++|++++..+.+.++....+..     ..++.++...
T Consensus        71 ~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (579)
T PLN03102         71 APNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEID  150 (579)
T ss_pred             cCCcHHHHHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccc
Confidence            99999999999999999999999999999999999999999999999988776666554433321     1244443210


Q ss_pred             CcccccccCCCceeeehhHHHhcccccCCC--CCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCC
Q psy6874         246 TSTDTTNFKQGIEIVPFKQIVKRGSESGSR--YEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIE  323 (504)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~  323 (504)
                       ...    .......+++++.+........  .......++++++|+|||||||.||||+++|.++............+.
T Consensus       151 -~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~  225 (579)
T PLN03102        151 -FPK----RPSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMG  225 (579)
T ss_pred             -ccc----CCcccccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCC
Confidence             000    0011234566665433221000  001124568999999999999999999999999765544443444667


Q ss_pred             CCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHh
Q psy6874         324 PNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVS  403 (504)
Q Consensus       324 ~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~  403 (504)
                      ..|+++..+|++|..++...+.++..|+++++........        .++.+++++||++.++|+++..+.+.......
T Consensus       226 ~~~~~l~~~pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~--------~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  297 (579)
T PLN03102        226 TCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPE--------IYKNIEMHNVTHMCCVPTVFNILLKGNSLDLS  297 (579)
T ss_pred             CCCeEEecCChhhhcchhHHHHHHHhcCcEEeeccCChHH--------HHHHHHHcCCeEEEeChHHHHHHHhCcccccC
Confidence            7889999999999999887778888999988775432222        14468999999999999999998763110000


Q ss_pred             ccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccc
Q psy6874         404 RASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTE  483 (504)
Q Consensus       404 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE  483 (504)
                                                               ...+++.+++||+++++++.++++. +|++++++||+||
T Consensus       298 -----------------------------------------~~~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE  335 (579)
T PLN03102        298 -----------------------------------------PRSGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTE  335 (579)
T ss_pred             -----------------------------------------CcccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccc
Confidence                                                     0135778999999999999999876 5999999999999


Q ss_pred             ccccee
Q psy6874         484 TTSCAT  489 (504)
Q Consensus       484 t~~~~~  489 (504)
                      +++.++
T Consensus       336 ~~~~~~  341 (579)
T PLN03102        336 ATGPVL  341 (579)
T ss_pred             cCcccc
Confidence            976543

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=4e-38  Score=340.93  Aligned_cols=336  Identities=14%  Similarity=0.111  Sum_probs=243.4

Q ss_pred             cccccCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCC
Q psy6874          83 IRLIRDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQE  162 (504)
Q Consensus        83 ~~~~~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~  162 (504)
                      .+|+..+..++.+.+.+   ..++++|+.+..                  ..++.+.+||+||.++++++|++|+++|++
T Consensus        79 ~~wf~~~~~n~~~~~~~---~~~~~~a~~~~~------------------~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~  137 (652)
T TIGR01217        79 AQWFPGARLNYAENLLR---AAGTEPALLYVD------------------ETHEPAPVTWAELRRQVASLAAALRALGVR  137 (652)
T ss_pred             CEECCCCeeeHHHHHhc---cCCCCeEEEEEC------------------CCCCeeEEeHHHHHHHHHHHHHHHHHcCCC
Confidence            45544555566554433   357888886532                  113346899999999999999999999999


Q ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCc---------hhHHHHHhhcCC
Q psy6874         163 PRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDL---------LPKFRNILKLTP  233 (504)
Q Consensus       163 ~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~  233 (504)
                      +||+|+++++|++|++++++||+++|++++|+++.++++++.+++++++++++|+++..         .+.+.++....+
T Consensus       138 ~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~  217 (652)
T TIGR01217       138 PGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELP  217 (652)
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999998753         355666666677


Q ss_pred             CceEEEEEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHH-H
Q psy6874         234 RVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIS-T  312 (504)
Q Consensus       234 ~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~-~  312 (504)
                      .++.++.++......  ...+.......|+++.......  .........+|+++|+|||||||.||||+++|.+++. .
T Consensus       218 ~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~  293 (652)
T TIGR01217       218 TLRAVVHIPYLGPRE--TEAPKIDGALDLEDFTAAAQAA--ELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQH  293 (652)
T ss_pred             CccEEEEEeCCCCcc--cccccccCcccHHHHHhcccCC--CCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHH
Confidence            777777764321000  0000001234577765432111  1122334568999999999999999999999999654 4


Q ss_pred             HHhhhhccCCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccc-cchhhhccCCcccccccCCcEEEeccHHH
Q psy6874         313 LKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMI-DTSSKIKRGTKGDASVLHPTALTAVPLIL  391 (504)
Q Consensus       313 ~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~-~~~~~i~~~~~~~i~~~~~T~~~~vP~~~  391 (504)
                      .......+++.++|+++++.|+.|+... ..+.+|+.|+++++.+..... +...     .++.++++++|++..+|.++
T Consensus       294 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~l~~G~t~vl~~g~~~~~~~~~-----~~~~i~~~~vt~~~~~p~~~  367 (652)
T TIGR01217       294 LKEHGLHCDLGPGDRLFYYTTTGWMMWN-WLVSGLATGATLVLYDGSPGFPATNV-----LWDIAERTGATLFGTSAKYV  367 (652)
T ss_pred             HHHHHhccCCCCCcEEEEeCCcchhhhH-HHHHHHhcCcEEEEECCCCCCCCchH-----HHHHHHHhCCeEEecCHHHH
Confidence            4444455688999999999999998642 345899999999997643221 2111     13458899999998777766


Q ss_pred             HHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh
Q psy6874         392 DRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL  471 (504)
Q Consensus       392 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~  471 (504)
                      ..+.+.-   ..                           +         ......++||.+++||+++++++.++++..+
T Consensus       368 ~~l~~~~---~~---------------------------~---------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~  408 (652)
T TIGR01217       368 MACRKAG---VH---------------------------P---------ARTHDLSALQCVASTGSPLPPDGFRWVYDEI  408 (652)
T ss_pred             HHHHhcC---CC---------------------------c---------cccCChhheeEEEeecCCCCHHHHHHHHHHh
Confidence            5553310   00                           0         0011126899999999999999999998877


Q ss_pred             C--Cceeeeccccccccce
Q psy6874         472 C--EKVIQGYGLTETTSCA  488 (504)
Q Consensus       472 ~--~~v~~~YG~TEt~~~~  488 (504)
                      +  ..+.+.||+||+++..
T Consensus       409 ~~~~~~~~~yG~TE~~~~~  427 (652)
T TIGR01217       409 KADVWLASISGGTDICSCF  427 (652)
T ss_pred             CCCceEEeccCHHHHhccc
Confidence            5  4577899999975433

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.2e-38  Score=331.56  Aligned_cols=323  Identities=24%  Similarity=0.339  Sum_probs=268.3

Q ss_pred             CCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEE
Q psy6874          89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVV  168 (504)
Q Consensus        89 ~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Va  168 (504)
                      ...++.++|++.++.+|+++|+...+                       +.+||+|++++++++|+.|.+.|+++|++|+
T Consensus         4 ~~~~l~~~l~~~~~~~p~~~a~~~~~-----------------------~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~   60 (521)
T PRK06187          4 YPLTIGRILRHGARKHPDKEAVYFDG-----------------------RRTTYAELDERVNRLANALRALGVKKGDRVA   60 (521)
T ss_pred             ccCCHHHHHHHHHHHCCCceEEEeCC-----------------------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            45689999999999999999996321                       4599999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcc
Q psy6874         169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTST  248 (504)
Q Consensus       169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~  248 (504)
                      ++++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++.+..+.+.++....+.++.++.+++.... 
T Consensus        61 l~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  139 (521)
T PRK06187         61 VFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAA-  139 (521)
T ss_pred             EECCCCHHHHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCcccc-
Confidence            9999999999999999999999999999999999999999999999999999888887777777777777777654111 


Q ss_pred             cccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEE
Q psy6874         249 DTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVF  328 (504)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~  328 (504)
                           ........+.++......   ........++++++++|||||||.||+|.++|.++..........+++.++|++
T Consensus       140 -----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~  211 (521)
T PRK06187        140 -----PLAPEVGEYEELLAAASD---TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVY  211 (521)
T ss_pred             -----ccccccccHHHHhhcCCc---cCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEE
Confidence                 112345566666554332   222334567899999999999999999999999999888888888899999999


Q ss_pred             EEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChH
Q psy6874         329 LGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPF  408 (504)
Q Consensus       329 l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~  408 (504)
                      ++.+|++|.+++...+.++..|+++++.+.......        +..+++++||++.++|.++..+.+.....       
T Consensus       212 ~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~--------~~~l~~~~~t~l~~~p~~~~~l~~~~~~~-------  276 (521)
T PRK06187        212 LVIVPMFHVHAWGLPYLALMAGAKQVIPRRFDPENL--------LDLIETERVTFFFAVPTIWQMLLKAPRAY-------  276 (521)
T ss_pred             EEeCCchHHhhHHHHHHHHHhCCEEEecCCCCHHHH--------HHHHHHhCCeEEEchHHHHHHHHcCcCCC-------
Confidence            999999999999877779999999999876422111        34588999999999999999887642110       


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccce
Q psy6874         409 KRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCA  488 (504)
Q Consensus       409 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~  488 (504)
                                                        .....++|.+++||+++++++.+++...+++++++.||+||+++.+
T Consensus       277 ----------------------------------~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~  322 (521)
T PRK06187        277 ----------------------------------FVDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVV  322 (521)
T ss_pred             ----------------------------------ccCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCccc
Confidence                                              0112589999999999999999999998899999999999998766


Q ss_pred             eecc
Q psy6874         489 TVMH  492 (504)
Q Consensus       489 ~~~~  492 (504)
                      +...
T Consensus       323 ~~~~  326 (521)
T PRK06187        323 SVLP  326 (521)
T ss_pred             ccCC
Confidence            6553

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-37  Score=331.01  Aligned_cols=326  Identities=21%  Similarity=0.246  Sum_probs=257.1

Q ss_pred             CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Q psy6874          91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIF  170 (504)
Q Consensus        91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~  170 (504)
                      .++.++|+++++++|++.++.++.                   .++++.+||.|+.++++++|++|.+.|+++||+|+++
T Consensus        10 ~~~~~~l~~~~~~~~~~~~~~~~~-------------------~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~   70 (539)
T PRK07008         10 LLISSLIAHAARHAGDTEIVSRRV-------------------EGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTL   70 (539)
T ss_pred             CCHHHHHHHHHhhCCCceEEEeec-------------------cCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            468899999999999988885431                   1334679999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcccc
Q psy6874         171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDT  250 (504)
Q Consensus       171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~  250 (504)
                      ++|+++|+++++||+++|++++|+++.++++++.++++.+++++++++.+..+.+.++....+.++.++...+.. ....
T Consensus        71 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  149 (539)
T PRK07008         71 AWNGYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAA-HLPA  149 (539)
T ss_pred             cCCcHHHHHHHHHHHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCC-cccc
Confidence            999999999999999999999999999999999999999999999999887776666665666666666654331 0000


Q ss_pred             cccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHH--hhhhccCCCCCcEE
Q psy6874         251 TNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLK--AFSDAVHIEPNDVF  328 (504)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~--~~~~~~~~~~~d~~  328 (504)
                          ....+..++++......   ........++++++++|||||||.||||++||.+++....  .....+++.++|++
T Consensus       150 ----~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~  222 (539)
T PRK07008        150 ----GSTPLLCYETLVGAQDG---DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAV  222 (539)
T ss_pred             ----CCcccccHHHHhcccCC---CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceE
Confidence                11345667777544322   1122245678899999999999999999999999865432  23345678889999


Q ss_pred             EEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChH
Q psy6874         329 LGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPF  408 (504)
Q Consensus       329 l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~  408 (504)
                      ++++|++|..++...+.++..|+++++.++..  +....     ++.++++++|++.++|.++..+.+.....       
T Consensus       223 l~~~p~~h~~~~~~~~~~l~~G~~~~~~~~~~--~~~~~-----~~~l~~~~vt~~~~~P~~~~~l~~~~~~~-------  288 (539)
T PRK07008        223 LPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDL--DGKSL-----YELIEAERVTFSAGVPTVWLGLLNHMREA-------  288 (539)
T ss_pred             EecCchHHhhhHHHHHHHHhcCceEEEecCCc--CHHHH-----HHHHHHcCCEEEEechHHHHHHHhccccc-------
Confidence            99999999988766778899999999875421  21111     33588999999999999999887632111       


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccce
Q psy6874         409 KRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCA  488 (504)
Q Consensus       409 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~  488 (504)
                                                        ....+++|.+++||+++++++.++++..++++++++||+||++..+
T Consensus       289 ----------------------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~  334 (539)
T PRK07008        289 ----------------------------------GLRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLG  334 (539)
T ss_pred             ----------------------------------CCCcccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccc
Confidence                                              0012689999999999999999999888999999999999998655


Q ss_pred             eec
Q psy6874         489 TVM  491 (504)
Q Consensus       489 ~~~  491 (504)
                      +..
T Consensus       335 ~~~  337 (539)
T PRK07008        335 TLC  337 (539)
T ss_pred             eec
Confidence            543

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-37  Score=333.71  Aligned_cols=340  Identities=23%  Similarity=0.304  Sum_probs=254.0

Q ss_pred             CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Q psy6874          91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIF  170 (504)
Q Consensus        91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~  170 (504)
                      .++.++++++++++|+++|+.+.+                       +.+||+|+.+.++++|+.|.++|+++||+|+++
T Consensus        32 ~~l~~~~~~~~~~~p~~~a~~~~~-----------------------~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~   88 (573)
T PRK05605         32 TTLVDLYDNAVARFGDRPALDFFG-----------------------ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIV   88 (573)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEeCC-----------------------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            379999999999999999996421                       469999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCC-ccc
Q psy6874         171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLT-STD  249 (504)
Q Consensus       171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~-~~~  249 (504)
                      ++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++....+.++.... ..+.++.++.... ...
T Consensus        89 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~  167 (573)
T PRK05605         89 LPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTT-PLETIVSVNMIAAMPLL  167 (573)
T ss_pred             CCCCHHHHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhcc-ccceeEeeecccccccc
Confidence            99999999999999999999999999999999999999999999999887665554443322 2344444432100 000


Q ss_pred             --------cc--------ccCCCceeeehhHHHhcccccC-CCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHH
Q psy6874         250 --------TT--------NFKQGIEIVPFKQIVKRGSESG-SRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST  312 (504)
Q Consensus       250 --------~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~  312 (504)
                              +.        ..........|+++........ .........++++++++|||||||.||+|.++|.++..+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~  247 (573)
T PRK05605        168 QRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFAN  247 (573)
T ss_pred             cccccccccccccccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHH
Confidence                    00        0001123456776654322110 001222356789999999999999999999999999887


Q ss_pred             HHhhhhccC-C-CCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccH
Q psy6874         313 LKAFSDAVH-I-EPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPL  389 (504)
Q Consensus       313 ~~~~~~~~~-~-~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~  389 (504)
                      +......+. + ..+|++++.+|++|.+++.. .+.++..|+++++.+......        .++.+++++||++.++|.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~--------~~~~l~~~~~t~~~~~P~  319 (573)
T PRK05605        248 AAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDL--------ILDAMKKHPPTWLPGVPP  319 (573)
T ss_pred             HHHHHhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHH--------HHHHHHHhCCEEEEchHH
Confidence            765443332 2 34789999999999999874 567889999998876433222        134588999999999999


Q ss_pred             HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHH
Q psy6874         390 ILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKV  469 (504)
Q Consensus       390 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~  469 (504)
                      +++.+.+.....                                         ....+++|.+++||+++++++.+.++.
T Consensus       320 ~~~~l~~~~~~~-----------------------------------------~~~~~~lr~i~~gg~~l~~~~~~~~~~  358 (573)
T PRK05605        320 LYEKIAEAAEER-----------------------------------------GVDLSGVRNAFSGAMALPVSTVELWEK  358 (573)
T ss_pred             HHHHHHhCcccc-----------------------------------------CCCchhccEEEECCCcCCHHHHHHHHH
Confidence            999987632111                                         001158999999999999999999998


Q ss_pred             HhCCceeeeccccccccceeecccCCCCCccCCC
Q psy6874         470 CLCEKVIQGYGLTETTSCATVMHLNDMGNINSNG  503 (504)
Q Consensus       470 ~~~~~v~~~YG~TEt~~~~~~~~~~d~~~~~s~G  503 (504)
                      .+++++++.||+||+++.++.....+....+++|
T Consensus       359 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G  392 (573)
T PRK05605        359 LTGGLLVEGYGLTETSPIIVGNPMSDDRRPGYVG  392 (573)
T ss_pred             HhCCCeecccccchhchhhhcCCcccCCcCCccc
Confidence            8899999999999998766555433323334444

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=2.6e-37  Score=328.28  Aligned_cols=323  Identities=18%  Similarity=0.254  Sum_probs=251.2

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..++.+++++.++.+|+++|+...+     +            ..+.++.+||+||+++++++|++|.+.|+++|++|++
T Consensus        21 ~~~~~~~~~~~~~~~p~~~a~~~~~-----~------------~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i   83 (538)
T TIGR03208        21 DRTINDHFDAAVANCPDKPALTAYR-----D------------GHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSF   83 (538)
T ss_pred             cCcHHHHHHHHHHHCCCceEEEeec-----c------------cCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            3578999999999999999986321     0            1123467999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch-----hHHHHHhhcCCCceEEEEEcCC
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL-----PKFRNILKLTPRVSTLIYMEDQ  244 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~~  244 (504)
                      +++|+++++++++||+++|++++|+++.++.+++.++++.++++++++++...     ..........+..+.++..+..
T Consensus        84 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (538)
T TIGR03208        84 QLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGD  163 (538)
T ss_pred             ECCCCHHHHHHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCC
Confidence            99999999999999999999999999999999999999999999999987642     2233333445555666665432


Q ss_pred             CCcccccccCCCceeeehhHHHhcccccCCC-----CCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhc
Q psy6874         245 LTSTDTTNFKQGIEIVPFKQIVKRGSESGSR-----YEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA  319 (504)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~  319 (504)
                      .             ...+++++.........     .......++++++++|||||||.||||+++|+++...+......
T Consensus       164 ~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~  230 (538)
T TIGR03208       164 G-------------DDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAER  230 (538)
T ss_pred             C-------------CcCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhh
Confidence            0             11233332211100000     11123467899999999999999999999999999998888888


Q ss_pred             cCCCCCcEEEEecChHHHHHHH-HHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHH
Q psy6874         320 VHIEPNDVFLGYLPLAHVFELL-SESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGV  398 (504)
Q Consensus       320 ~~~~~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~  398 (504)
                      +.+..+|++++++|++|..++. ..+.+++.|+++++.+.......        ++.++++++|++.++|.++..+....
T Consensus       231 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~--------~~~l~~~~vt~~~~~p~~~~~l~~~~  302 (538)
T TIGR03208       231 LELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARA--------AELIRETGVTFTMASTPFLTDLCRAV  302 (538)
T ss_pred             cCCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHH--------HHHHHHhCCeEEecCHHHHHHHHhch
Confidence            8889999999999999999876 47788999999988653322221        33588999999999999998876532


Q ss_pred             HHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeee
Q psy6874         399 HEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQG  478 (504)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~  478 (504)
                      ...                                         ....+++|.+++||+++++++.+++...+++++++.
T Consensus       303 ~~~-----------------------------------------~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~  341 (538)
T TIGR03208       303 KES-----------------------------------------GAPVPSLFTFLCAGAPIPGILVERAWELLGALIVSA  341 (538)
T ss_pred             hcc-----------------------------------------CCCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEee
Confidence            110                                         001158999999999999999999988889999999


Q ss_pred             ccccccccceeec
Q psy6874         479 YGLTETTSCATVM  491 (504)
Q Consensus       479 YG~TEt~~~~~~~  491 (504)
                      ||+||+++..+..
T Consensus       342 YG~tE~~~~~~~~  354 (538)
T TIGR03208       342 WGMTENGAVTVTE  354 (538)
T ss_pred             eccCcCCCccccC
Confidence            9999987665443

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=2.1e-37  Score=328.14  Aligned_cols=312  Identities=18%  Similarity=0.207  Sum_probs=245.3

Q ss_pred             CCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEE
Q psy6874          89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVV  168 (504)
Q Consensus        89 ~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Va  168 (504)
                      ...++.++|+++++.+|+++|+.+                       +.+.+||+|+.++++++|+.|.+.|+++|++|+
T Consensus        21 ~~~~l~~~~~~~a~~~p~~~a~~~-----------------------~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~   77 (527)
T TIGR02275        21 QDKPLTDILRDQAARYPDAIAIIC-----------------------GNRQWSYRELDQRADNLAAGLTKLGIGQGDTAV   77 (527)
T ss_pred             cCCcHHHHHHHHHHHCCCceEEEe-----------------------CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            355799999999999999999952                       125799999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch-----hHHHHHhhcCCCceEEEEEcC
Q psy6874         169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL-----PKFRNILKLTPRVSTLIYMED  243 (504)
Q Consensus       169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~  243 (504)
                      ++++|+++|+++++||+++|++++++++..+.+++.++++.+++++++++....     +....+....+.++.++....
T Consensus        78 i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (527)
T TIGR02275        78 VQLPNIAEFYIVFFALLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQ  157 (527)
T ss_pred             EECCCcHHHHHHHHHHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecC
Confidence            999999999999999999999999999999999999999999999999986532     112222233455555555432


Q ss_pred             CCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCC
Q psy6874         244 QLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIE  323 (504)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~  323 (504)
                      .  ..          ........+....   ..+.....++++++|+|||||||.||||+++|.++..++........+.
T Consensus       158 ~--~~----------~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~  222 (527)
T TIGR02275       158 T--RV----------EAELFLWLESPAE---PVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLT  222 (527)
T ss_pred             C--CC----------cchhhHHhhCcCc---cccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCC
Confidence            1  00          0001111111110   1112244678999999999999999999999999999988887788889


Q ss_pred             CCcEEEEecChHHHHHHHH--HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHH
Q psy6874         324 PNDVFLGYLPLAHVFELLS--ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEK  401 (504)
Q Consensus       324 ~~d~~l~~lPl~h~~~~~~--~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~  401 (504)
                      ++|++++.+|++|.+++..  .+.++..|+++++.+.......        +..++++++|++.++|.++..+.+.....
T Consensus       223 ~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~--------~~~i~~~~~t~~~~~p~~~~~l~~~~~~~  294 (527)
T TIGR02275       223 QQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDC--------FPLIERHKVTVTALVPPAVALWMQAASKS  294 (527)
T ss_pred             cCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECCCCCHHHH--------HHHHHHhCCeEEEecHHHHHHHHhCcccc
Confidence            9999999999999999874  6788999999988654322221        33588999999999999998876532110


Q ss_pred             HhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccc
Q psy6874         402 VSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGL  481 (504)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~  481 (504)
                                                               ....+++|.+++||+++++++.++++..+|++++++||+
T Consensus       295 -----------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~  333 (527)
T TIGR02275       295 -----------------------------------------RYDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGM  333 (527)
T ss_pred             -----------------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeecc
Confidence                                                     011258999999999999999999999899999999999


Q ss_pred             cccccc
Q psy6874         482 TETTSC  487 (504)
Q Consensus       482 TEt~~~  487 (504)
                      ||++..
T Consensus       334 tE~~~~  339 (527)
T TIGR02275       334 AEGLVN  339 (527)
T ss_pred             CccCcc
Confidence            997543

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=2.5e-37  Score=326.93  Aligned_cols=337  Identities=18%  Similarity=0.211  Sum_probs=254.1

Q ss_pred             CCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEE
Q psy6874          89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVV  168 (504)
Q Consensus        89 ~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Va  168 (504)
                      +..+|.++|++.++++|+++|+.+.+                  ..++++.+||.||.++++++|++|.++|+++||+|+
T Consensus         5 ~~~~l~~~~~~~a~~~p~~~a~~~~~------------------~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~   66 (517)
T PRK08008          5 GGQHLRQMWDDLADVYGHKTALIFES------------------SGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVA   66 (517)
T ss_pred             ccccHHHHHHHHHHHCCCceEEEccc------------------CCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            34689999999999999999996532                  113457899999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhc-CCCceEEEEEcCCCCc
Q psy6874         169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKL-TPRVSTLIYMEDQLTS  247 (504)
Q Consensus       169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~l~~ii~~~~~~~~  247 (504)
                      ++++|+++|+++++||+++|++++++++.++.+++.+++++++++.++++++..+.+.++... .+.++.++..+..  .
T Consensus        67 i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  144 (517)
T PRK08008         67 LHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVA--L  144 (517)
T ss_pred             EEcCCCHHHHHHHHHHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCC--C
Confidence            999999999999999999999999999999999999999999999999999877776665443 2344555555432  1


Q ss_pred             ccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcE
Q psy6874         248 TDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDV  327 (504)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~  327 (504)
                      .      ....+..+++........  .....+..++++++|+|||||||.||||+++|.|+............+.++|+
T Consensus       145 ~------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~  216 (517)
T PRK08008        145 P------ADDGVSSFTQLKAQQPAT--LCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDV  216 (517)
T ss_pred             c------ccccccCHHHHhccCCcc--ccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCe
Confidence            0      011234455544332211  11123346689999999999999999999999999866544333446788999


Q ss_pred             EEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccC
Q psy6874         328 FLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRAS  406 (504)
Q Consensus       328 ~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~  406 (504)
                      +++.+|++|..+... ++.++..|+++++.+.......        ++.+++++||++.++|.++.++........    
T Consensus       217 ~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----  284 (517)
T PRK08008        217 YLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKYSARAF--------WGQVCKYRATITECIPMMIRTLMVQPPSAN----  284 (517)
T ss_pred             EEEecCcHHHHHHHHHHHHHHhcCcEEEEccccCHHHH--------HHHHHHcCCcEEechHHHHHHHHhCCCccc----
Confidence            999999999877664 6788999999999865432221        445889999999999999888754210000    


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccccccc
Q psy6874         407 PFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTS  486 (504)
Q Consensus       407 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~  486 (504)
                                                           .....+|.++++ .+++++....+...+++++++.||+||+++
T Consensus       285 -------------------------------------~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~  326 (517)
T PRK08008        285 -------------------------------------DRQHCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIV  326 (517)
T ss_pred             -------------------------------------cccccceeeEEe-cCCCHHHHHHHHHHhCCeEEeecccccccc
Confidence                                                 001367777775 488999999998888999999999999976


Q ss_pred             ceeecccCCCCCccCCC
Q psy6874         487 CATVMHLNDMGNINSNG  503 (504)
Q Consensus       487 ~~~~~~~~d~~~~~s~G  503 (504)
                      .++.....+....+++|
T Consensus       327 ~~~~~~~~~~~~~~~~G  343 (517)
T PRK08008        327 GIIGDRPGDKRRWPSIG  343 (517)
T ss_pred             ccccCCccccccCCccc
Confidence            55544333333333444

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=2.6e-37  Score=328.41  Aligned_cols=318  Identities=19%  Similarity=0.229  Sum_probs=248.7

Q ss_pred             CCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEE
Q psy6874          89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVV  168 (504)
Q Consensus        89 ~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Va  168 (504)
                      ...++.++|++.++++||++|+.+.                      + +.+||+|+.++++++|+.|.+.|+++|++|+
T Consensus        19 ~~~~l~~~l~~~a~~~p~~~a~~~~----------------------~-~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~   75 (542)
T PRK06155         19 SERTLPAMLARQAERYPDRPLLVFG----------------------G-TRWTYAEAARAAAAAAHALAAAGVKRGDRVA   75 (542)
T ss_pred             cccCHHHHHHHHHHHCCCCeEEEeC----------------------C-ccccHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            3457899999999999999999632                      1 5799999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcc
Q psy6874         169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTST  248 (504)
Q Consensus       169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~  248 (504)
                      ++++|+++|+++++||+++|++++|+++.++.+++.++++++++++++++.+..+.+.+.......++.++.++....  
T Consensus        76 v~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  153 (542)
T PRK06155         76 LMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPAS--  153 (542)
T ss_pred             EECCCChHHHHHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccc--
Confidence            999999999999999999999999999999999999999999999999998877666554433334556666554311  


Q ss_pred             cccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEE
Q psy6874         249 DTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVF  328 (504)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~  328 (504)
                       . .......   ..+... ...   ........++++++|+|||||||.||||+++|.++..........+++.++|++
T Consensus       154 -~-~~~~~~~---~~~~~~-~~~---~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~  224 (542)
T PRK06155        154 -V-SVPAGWS---TAPLPP-LDA---PAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVL  224 (542)
T ss_pred             -c-ccccccc---hhhhcc-cCC---CCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEE
Confidence             0 0000000   001110 000   112233467899999999999999999999999998887777777889999999


Q ss_pred             EEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChH
Q psy6874         329 LGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPF  408 (504)
Q Consensus       329 l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~  408 (504)
                      ++++|++|.+++...+.+++.|+++++.+.......        +..+++++||.+.++|+++..+.+.....       
T Consensus       225 l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~--------~~~l~~~~~t~~~~~p~~~~~l~~~~~~~-------  289 (542)
T PRK06155        225 YTTLPLFHTNALNAFFQALLAGATYVLEPRFSASGF--------WPAVRRHGATVTYLLGAMVSILLSQPARE-------  289 (542)
T ss_pred             EEecCHHHHHHHHHHHHHHHcCceEEeeCCCCHHHH--------HHHHHHhCCcEEEchHHHHHHHHcCcCcc-------
Confidence            999999999999888899999999998765322221        33588999999999999988876531100       


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccce
Q psy6874         409 KRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCA  488 (504)
Q Consensus       409 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~  488 (504)
                                                        ....+++|.++.||  +++++.+.++..+++++++.||+||++..+
T Consensus       290 ----------------------------------~~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~  333 (542)
T PRK06155        290 ----------------------------------SDRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVI  333 (542)
T ss_pred             ----------------------------------ccccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccc
Confidence                                              00125799888666  578899999988999999999999998765


Q ss_pred             eec
Q psy6874         489 TVM  491 (504)
Q Consensus       489 ~~~  491 (504)
                      +..
T Consensus       334 ~~~  336 (542)
T PRK06155        334 AVT  336 (542)
T ss_pred             cCC
Confidence            543

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2e-37  Score=329.48  Aligned_cols=319  Identities=19%  Similarity=0.212  Sum_probs=257.0

Q ss_pred             CCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEE
Q psy6874          89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVV  168 (504)
Q Consensus        89 ~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Va  168 (504)
                      ...|+.+.++..++.+|+++|+.+.+                       +.+||.||.++++++|++|.+.|+++|++|+
T Consensus        15 ~~~n~~~~~~~~a~~~~~~~a~~~~~-----------------------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~   71 (542)
T PRK07786         15 RRQNWVNQLARHALMQPDAPALRFLG-----------------------NTTTWRELDDRVAALAGALSRRGVGFGDRVL   71 (542)
T ss_pred             cccCHHHHHHHHHHHCCCCeEEEeCC-----------------------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            35689999999999999999996321                       4699999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcc
Q psy6874         169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTST  248 (504)
Q Consensus       169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~  248 (504)
                      ++++|+++|+++++||+++|++++|+++.++.+++.++++++++++++++....+.+.......+..+.++.+++..   
T Consensus        72 i~~~~~~~~~~~~~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  148 (542)
T PRK07786         72 ILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSS---  148 (542)
T ss_pred             EECCCCHHHHHHHHHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCC---
Confidence            99999999999999999999999999999999999999999999999999887666655545556666666664320   


Q ss_pred             cccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCC-CCCcE
Q psy6874         249 DTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHI-EPNDV  327 (504)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-~~~d~  327 (504)
                             .....++++++.....   .........+++++++|||||||.||||+++|.++...+......+++ ..+|+
T Consensus       149 -------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~  218 (542)
T PRK07786        149 -------DDSVLGYEDLLAEAGP---AHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDV  218 (542)
T ss_pred             -------cccccCHHHHhhccCC---CCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCce
Confidence                   0123456666543322   122234456789999999999999999999999999888777666666 67899


Q ss_pred             EEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccCh
Q psy6874         328 FLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASP  407 (504)
Q Consensus       328 ~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~  407 (504)
                      +++.+|++|.+++...+.++..|+++++.+... .+....     ++.++++++|.++++|.++..+........     
T Consensus       219 ~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~-~~~~~~-----~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~-----  287 (542)
T PRK07786        219 GFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLGA-FDPGQL-----LDVLEAEKVTGIFLVPAQWQAVCAEQQARP-----  287 (542)
T ss_pred             EEEecchHHHHHHHHHHHHHHccCEEEEccCCC-cCHHHH-----HHHHHHcCCeEEEehHHHHHHHHhCcccCc-----
Confidence            999999999999988889999999999865322 122111     445889999999999999999865311000     


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeecccccccc
Q psy6874         408 FKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTS  486 (504)
Q Consensus       408 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~  486 (504)
                                                           ...++|.+++||+++++++.++++..+ ++++++.||+||+++
T Consensus       288 -------------------------------------~~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~  330 (542)
T PRK07786        288 -------------------------------------RDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSP  330 (542)
T ss_pred             -------------------------------------cCcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeeccccccc
Confidence                                                 002699999999999999999999888 789999999999986


Q ss_pred             ceeec
Q psy6874         487 CATVM  491 (504)
Q Consensus       487 ~~~~~  491 (504)
                      ..+..
T Consensus       331 ~~~~~  335 (542)
T PRK07786        331 VTCML  335 (542)
T ss_pred             ceEec
Confidence            65544

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.6e-37  Score=323.91  Aligned_cols=309  Identities=21%  Similarity=0.279  Sum_probs=245.7

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ++|+.+.|++.+.++||++|+.+.                      + +.+||.|+.++++++++.|.+.|+++||+|++
T Consensus         1 ~~~~~~~l~~~a~~~p~~~a~~~~----------------------~-~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i   57 (483)
T PRK03640          1 METMPNWLKQRAFLTPDRTAIEFE----------------------E-KKVTFMELHEAVVSVAGKLAALGVKKGDRVAL   57 (483)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEeC----------------------C-eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            368999999999999999999632                      1 67999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD  249 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~  249 (504)
                      +++|+++++++++||+++|++++|+++..+.+++.++++.++++.++++++....+....    .               
T Consensus        58 ~~~~~~~~~~~~la~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~----~---------------  118 (483)
T PRK03640         58 LMKNGMEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI----S---------------  118 (483)
T ss_pred             ECCCCHHHHHHHHHHHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc----c---------------
Confidence            999999999999999999999999999999999999999999999999876544322110    0               


Q ss_pred             ccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEE
Q psy6874         250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFL  329 (504)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l  329 (504)
                                ..++++.......  ........++++++++|||||||.||+|+++|.|+...+......+++.++|+++
T Consensus       119 ----------~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l  186 (483)
T PRK03640        119 ----------VKFAELMNGPKEE--AEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWL  186 (483)
T ss_pred             ----------ccHHHHhhccccc--CCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEE
Confidence                      0123322221111  1122234568999999999999999999999999988877777777899999999


Q ss_pred             EecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHH
Q psy6874         330 GYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFK  409 (504)
Q Consensus       330 ~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~  409 (504)
                      +.+|++|++++...+.++..|+++++.+.......        ++.++++++|++.++|+++..+.+...+.        
T Consensus       187 ~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~--------~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--------  250 (483)
T PRK03640        187 AAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKI--------NKLLQTGGVTIISVVSTMLQRLLERLGEG--------  250 (483)
T ss_pred             EecCHHHHHHHHHHHHHHhcCCEEEecCCCCHHHH--------HHHHHHhCCcEEEeHHHHHHHHHhCcCcc--------
Confidence            99999999999888899999999999875433222        33588999999999999999886532110        


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccccccccee
Q psy6874         410 RALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCAT  489 (504)
Q Consensus       410 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~  489 (504)
                                                        ....++|.+++||++++++++++++. +++++++.||+||++..+.
T Consensus       251 ----------------------------------~~~~~lr~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~  295 (483)
T PRK03640        251 ----------------------------------TYPSSFRCMLLGGGPAPKPLLEQCKE-KGIPVYQSYGMTETASQIV  295 (483)
T ss_pred             ----------------------------------ccCCcceEEEEcCCCCCHHHHHHHHH-hCCCeeeeeccCccccccc
Confidence                                              01148999999999999999999887 4999999999999875433


Q ss_pred             ecccC-CCCCccCCC
Q psy6874         490 VMHLN-DMGNINSNG  503 (504)
Q Consensus       490 ~~~~~-d~~~~~s~G  503 (504)
                      ..... .....+++|
T Consensus       296 ~~~~~~~~~~~~~vG  310 (483)
T PRK03640        296 TLSPEDALTKLGSAG  310 (483)
T ss_pred             ccCcccccccCCCcc
Confidence            32222 223344554

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=4.6e-37  Score=327.11  Aligned_cols=318  Identities=17%  Similarity=0.238  Sum_probs=250.7

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..++.++|++.++++|+++|+.+                      ++.+.+||+|++++++++|++|++.|+++||+|++
T Consensus        22 ~~~l~~~~~~~~~~~pd~~a~~~----------------------~~~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i   79 (547)
T PRK06087         22 DASLADYWQQTARAMPDKIAVVD----------------------NHGASYTYSALDHAASRLANWLLAKGIEPGDRVAF   79 (547)
T ss_pred             CCCHHHHHHHHHHHCCCceEEEc----------------------CCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            45799999999999999999852                      11146899999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCc-----hhHHHHHhhcCCCceEEEEEcCC
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDL-----LPKFRNILKLTPRVSTLIYMEDQ  244 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~l~~ii~~~~~  244 (504)
                      +++|+++|+++++||+++|++++|+++.++.+++.++++.++++++++++..     .+.+..+....+.++.++.++..
T Consensus        80 ~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (547)
T PRK06087         80 QLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKL  159 (547)
T ss_pred             ECCCCHHHHHHHHHHHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCc
Confidence            9999999999999999999999999999999999999999999999997632     23444444555666667766543


Q ss_pred             CCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCC
Q psy6874         245 LTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEP  324 (504)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~  324 (504)
                      ...         .....+.++......   .........+++++|+|||||||.||+|+++|.++..........+.+.+
T Consensus       160 ~~~---------~~~~~~~~~~~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~  227 (547)
T PRK06087        160 APA---------TSSLSLSQIIADYEP---LTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTW  227 (547)
T ss_pred             CCC---------cCccCHHHHhccCCc---ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCC
Confidence            100         112245555433221   11222346789999999999999999999999999988887777778899


Q ss_pred             CcEEEEecChHHHHHHH-HHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHh
Q psy6874         325 NDVFLGYLPLAHVFELL-SESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVS  403 (504)
Q Consensus       325 ~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~  403 (504)
                      +|++++.+|++|++++. ..+.+++.|+++++.........        ++.++++++|++..+|..+..+.+.....  
T Consensus       228 ~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~--------~~~i~~~~~t~~~~~~~~~~~~l~~~~~~--  297 (547)
T PRK06087        228 QDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDAC--------LALLEQQRCTCMLGATPFIYDLLNLLEKQ--  297 (547)
T ss_pred             CCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCCCCHHHH--------HHHHHHcCCCEEeccHHHHHHHHhccccC--
Confidence            99999999999999987 46788899999999765433222        33578999999998877776665421100  


Q ss_pred             ccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccc
Q psy6874         404 RASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTE  483 (504)
Q Consensus       404 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE  483 (504)
                                                             ....+++|.+++||+++++++.+.+... ++++++.||+||
T Consensus       298 ---------------------------------------~~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE  337 (547)
T PRK06087        298 ---------------------------------------PADLSALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTE  337 (547)
T ss_pred             ---------------------------------------CCCCCCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccc
Confidence                                                   0112589999999999999999988764 999999999999


Q ss_pred             cccceeec
Q psy6874         484 TTSCATVM  491 (504)
Q Consensus       484 t~~~~~~~  491 (504)
                      +++.....
T Consensus       338 ~~~~~~~~  345 (547)
T PRK06087        338 SSPHAVVN  345 (547)
T ss_pred             cCCccccC
Confidence            97655443

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.9e-37  Score=326.44  Aligned_cols=327  Identities=19%  Similarity=0.215  Sum_probs=254.7

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      +.++.++|+++++++||++|+...                   ..+..+.+||+|+.++++++|++|.+.|+++||+|++
T Consensus         9 ~~~~~~~~~~~a~~~~~~~~~~~~-------------------~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i   69 (542)
T PRK06018          9 PLLCHRIIDHAARIHGNREVVTRS-------------------VEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVAT   69 (542)
T ss_pred             CCCHHHHHHHHHHhCCCceEEEee-------------------ccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            458999999999999999999631                   1133468999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD  249 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~  249 (504)
                      +++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++.+..+.+.++....+.++.++...+.. ...
T Consensus        70 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  148 (542)
T PRK06018         70 IAWNTWRHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAA-HMP  148 (542)
T ss_pred             EcCCchHHHHHHHHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEecccc-ccc
Confidence            9999999999999999999999999999999999999999999999999988877777666666777666554321 000


Q ss_pred             ccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHH-HHH-HhhhhccCCCCCcE
Q psy6874         250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMI-STL-KAFSDAVHIEPNDV  327 (504)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~-~~~-~~~~~~~~~~~~d~  327 (504)
                      .   ........+++++.....   ........++++++|+|||||||.||||++||.+.+ ... ......+++..+|+
T Consensus       149 ~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~  222 (542)
T PRK06018        149 Q---TTLKNAVAYEEWIAEADG---DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADT  222 (542)
T ss_pred             c---cCccccccHHHHhccCCc---ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCE
Confidence            0   011133456666543321   111223456889999999999999999999999743 322 22334567889999


Q ss_pred             EEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccCh
Q psy6874         328 FLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASP  407 (504)
Q Consensus       328 ~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~  407 (504)
                      ++..+|++|.+++...+.++..|+++++....  .+....     ++.+++++||++.++|+++..+.+......     
T Consensus       223 ~~~~~p~~h~~~~~~~~~~~~~g~~~v~~~~~--~~~~~~-----~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~-----  290 (542)
T PRK06018        223 MLPVVPLFHANSWGIAFSAPSMGTKLVMPGAK--LDGASV-----YELLDTEKVTFTAGVPTVWLMLLQYMEKEG-----  290 (542)
T ss_pred             EEEecCHHHHhhhHHHHhhhhcCceEEccCcC--CCHHHH-----HHHHHhcCCceeecCcHHHHHHHhcccccC-----
Confidence            99999999999988777889999999875322  111111     345889999999999999998876321110     


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccc
Q psy6874         408 FKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSC  487 (504)
Q Consensus       408 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~  487 (504)
                                                          ...+++|.+++||+++++++.++++. +++++++.||+||++..
T Consensus       291 ------------------------------------~~~~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~  333 (542)
T PRK06018        291 ------------------------------------LKLPHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPL  333 (542)
T ss_pred             ------------------------------------CCcccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcc
Confidence                                                01158999999999999999999999 89999999999999876


Q ss_pred             eeec
Q psy6874         488 ATVM  491 (504)
Q Consensus       488 ~~~~  491 (504)
                      ++..
T Consensus       334 ~~~~  337 (542)
T PRK06018        334 GTLA  337 (542)
T ss_pred             cccc
Confidence            5543

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=7.1e-37  Score=324.90  Aligned_cols=317  Identities=22%  Similarity=0.300  Sum_probs=250.2

Q ss_pred             cCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy6874          87 RDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHN  166 (504)
Q Consensus        87 ~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~  166 (504)
                      .+...++.+++.+.++++|+++|+.+.                     ...+++||.||.++++++|+.|.+.|+++||+
T Consensus        19 ~~~~~~~~~~l~~~~~~~~~~~a~~~~---------------------~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~   77 (537)
T PLN02246         19 IPNHLPLHDYCFERLSEFSDRPCLIDG---------------------ATGRVYTYADVELLSRRVAAGLHKLGIRQGDV   77 (537)
T ss_pred             CCCCCcHHHHHHHHHHhCCCCeEEEec---------------------CCCceeeHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence            344567999999999999999998631                     11257999999999999999999999999999


Q ss_pred             EEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCC
Q psy6874         167 VVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLT  246 (504)
Q Consensus       167 Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~  246 (504)
                      |+++++|+++|+++++||++.|++++|+++.++.+++.++++.++++++|++++..+.+.++... +.+ .++.++... 
T Consensus        78 V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~~~-~~i~~~~~~-  154 (537)
T PLN02246         78 VMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED-DGV-TVVTIDDPP-  154 (537)
T ss_pred             EEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc-CCc-eEEEeCCCC-
Confidence            99999999999999999999999999999999999999999999999999998877666554321 222 344444320 


Q ss_pred             cccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhh----ccCC
Q psy6874         247 STDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD----AVHI  322 (504)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~  322 (504)
                                .....+.++......   ..+.....++++++++|||||||.||||+++|+++...+.....    .+.+
T Consensus       155 ----------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~  221 (537)
T PLN02246        155 ----------EGCLHFSELTQADEN---ELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYF  221 (537)
T ss_pred             ----------CCceeHHHHhcCCCC---CCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCC
Confidence                      112344554432211   22233456789999999999999999999999999887765433    4578


Q ss_pred             CCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHH
Q psy6874         323 EPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEK  401 (504)
Q Consensus       323 ~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~  401 (504)
                      .++|++++.+|++|++++.. .+.++..|+++++.+.......        ++.++++++|++.++|.++..+.+.... 
T Consensus       222 ~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~--------~~~i~~~~~t~~~~~p~~~~~l~~~~~~-  292 (537)
T PLN02246        222 HSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGAL--------LELIQRHKVTIAPFVPPIVLAIAKSPVV-  292 (537)
T ss_pred             CCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHH--------HHHHHHhCceEEEcchHHHHHHhcCccc-
Confidence            89999999999999999875 6678999999999876433222        4458899999999999999887652100 


Q ss_pred             HhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeecc
Q psy6874         402 VSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYG  480 (504)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG  480 (504)
                                                              .....+++|.+++||+++++++.+++++.+ +++++++||
T Consensus       293 ----------------------------------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG  332 (537)
T PLN02246        293 ----------------------------------------EKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYG  332 (537)
T ss_pred             ----------------------------------------cccCccceeEEEEecCcCCHHHHHHHHHHcCCCeEecccc
Confidence                                                    000125899999999999999999999888 788999999


Q ss_pred             cccccccee
Q psy6874         481 LTETTSCAT  489 (504)
Q Consensus       481 ~TEt~~~~~  489 (504)
                      +||++..++
T Consensus       333 ~tE~~~~~~  341 (537)
T PLN02246        333 MTEAGPVLA  341 (537)
T ss_pred             ccccCcccc
Confidence            999876544

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.8e-37  Score=323.08  Aligned_cols=308  Identities=16%  Similarity=0.216  Sum_probs=240.4

Q ss_pred             cHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEc
Q psy6874          92 TMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFA  171 (504)
Q Consensus        92 tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~  171 (504)
                      ++.+.|+++++++|+++|+.+.                       ...+||.|+.++++++|++|.+.|. +|++|+|++
T Consensus         2 ~~~~~~~~~a~~~p~~~a~~~~-----------------------~~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~   57 (487)
T PRK07638          2 GITKEYKKHASLQPNKIAIKEN-----------------------DRVLTYKDWFESVCKVANWLNEKES-KNKTIAILL   57 (487)
T ss_pred             ChHHHHHHHHHhCCCCeEEecC-----------------------CcEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEc
Confidence            5778999999999999999632                       1579999999999999999999884 899999999


Q ss_pred             CCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccccc
Q psy6874         172 ETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT  251 (504)
Q Consensus       172 ~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~  251 (504)
                      +|+++|+++++||+++|++++|+++.++++++.++++.+++++++++......+...     . ..++..+.        
T Consensus        58 ~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-----~-~~~~~~~~--------  123 (487)
T PRK07638         58 ENRIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE-----E-GRVIEIDE--------  123 (487)
T ss_pred             CCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc-----c-ceEEEehh--------
Confidence            999999999999999999999999999999999999999999999998654433211     0 11222211        


Q ss_pred             ccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEEe
Q psy6874         252 NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGY  331 (504)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~  331 (504)
                                +.+.......   .........+++++|+|||||||.||||+++|.+++.++......+.+.++|+++..
T Consensus       124 ----------~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~  190 (487)
T PRK07638        124 ----------WKRMIEKYLP---TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIA  190 (487)
T ss_pred             ----------hhhhhhhccc---cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEe
Confidence                      1111111110   111112235778999999999999999999999999988888777889999999999


Q ss_pred             cChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHH
Q psy6874         332 LPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRA  411 (504)
Q Consensus       332 lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~  411 (504)
                      .|++|..++...+.+++.|+++++.+.....+.        ++.++++++|++.++|.++..+.+..     ..      
T Consensus       191 ~~l~~~~~l~~~~~~l~~g~~~~~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~-----~~------  251 (487)
T PRK07638        191 GTLVHSLFLYGAISTLYVGQTVHLMRKFIPNQV--------LDKLETENISVMYTVPTMLESLYKEN-----RV------  251 (487)
T ss_pred             ecchHHHHHHHHHHHHccCcEEEEcCCCCHHHH--------HHHHHHcCCeEEEeCcHHHHHHHhCc-----Cc------
Confidence            999999988888889999999998764332222        44589999999999999998886530     00      


Q ss_pred             HHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeeccccccccceee
Q psy6874         412 LFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTSCATV  490 (504)
Q Consensus       412 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~~~~~  490 (504)
                                                        ..+.+.+++||++++++..++++..+ ++++++.||+||++..+..
T Consensus       252 ----------------------------------~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~  297 (487)
T PRK07638        252 ----------------------------------IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTAL  297 (487)
T ss_pred             ----------------------------------CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEe
Confidence                                              12455577899999999999999888 7899999999999876555


Q ss_pred             cccCCCCCccCCC
Q psy6874         491 MHLNDMGNINSNG  503 (504)
Q Consensus       491 ~~~~d~~~~~s~G  503 (504)
                      .........+++|
T Consensus       298 ~~~~~~~~~~~~G  310 (487)
T PRK07638        298 VDEESERRPNSVG  310 (487)
T ss_pred             cccccCCCCCCCC
Confidence            4432223344555

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.7e-37  Score=323.99  Aligned_cols=323  Identities=20%  Similarity=0.202  Sum_probs=255.8

Q ss_pred             CCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEE
Q psy6874          89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVV  168 (504)
Q Consensus        89 ~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Va  168 (504)
                      ...++.+++.+.++++|+++|+.+.+                       +.+||+|+.+.++++|+.|.+.|+++||+|+
T Consensus         9 ~~~~l~~~l~~~a~~~~~~~a~~~~~-----------------------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~   65 (523)
T PRK08316          9 RRQTIGDILRRSARRYPDKTALVFGD-----------------------RSWTYAELDAAVNRVAAALLDLGLKKGDRVA   65 (523)
T ss_pred             cCCCHHHHHHHHHHHCCCCeEEEECC-----------------------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            35679999999999999999996421                       5799999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcc
Q psy6874         169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTST  248 (504)
Q Consensus       169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~  248 (504)
                      ++++|+++++++++||++.|++++|+++.++.+++.++++.+++++++++.+..+.+.+.....+ ...+......    
T Consensus        66 l~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~~~~~~----  140 (523)
T PRK08316         66 ALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLP-VDTLILSLVL----  140 (523)
T ss_pred             EECCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcC-ccceeeeecc----
Confidence            99999999999999999999999999999999999999999999999999887776665544333 1111111111    


Q ss_pred             cccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEE
Q psy6874         249 DTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVF  328 (504)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~  328 (504)
                        ...........++++......   .........+++++++|||||||.||+|.++|.++..........+++.++|++
T Consensus       141 --~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~  215 (523)
T PRK08316        141 --GGREAPGGWLDFADWAEAGSV---AEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIP  215 (523)
T ss_pred             --cccccccchhhHHHHHhcCCC---ccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceE
Confidence              001111234555555443321   223344567899999999999999999999999999988877777889999999


Q ss_pred             EEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccCh
Q psy6874         329 LGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASP  407 (504)
Q Consensus       329 l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~  407 (504)
                      ++.+|++|.+++.. .+.++..|+++++.+.......        ++.++++++|++.++|.++..+.+....       
T Consensus       216 ~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------  280 (523)
T PRK08316        216 LHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELI--------LRTIEAERITSFFAPPTVWISLLRHPDF-------  280 (523)
T ss_pred             EEccCCchhhhHHHHHHHHHhcCceEEEecCCCHHHH--------HHHHHHhCCeEEEeCHHHHHHHHcCccc-------
Confidence            99999999999875 5567889999999765432222        3458899999999999999887653110       


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeecccccccc
Q psy6874         408 FKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTS  486 (504)
Q Consensus       408 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~  486 (504)
                                                        +....+++|.+++||+++++++.+.++..+ ++++++.||+||++.
T Consensus       281 ----------------------------------~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~  326 (523)
T PRK08316        281 ----------------------------------DTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAP  326 (523)
T ss_pred             ----------------------------------ccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCc
Confidence                                              011125899999999999999999999887 789999999999987


Q ss_pred             ceeeccc
Q psy6874         487 CATVMHL  493 (504)
Q Consensus       487 ~~~~~~~  493 (504)
                      .++....
T Consensus       327 ~~~~~~~  333 (523)
T PRK08316        327 LATVLGP  333 (523)
T ss_pred             cccccCc
Confidence            7666543

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=2.5e-37  Score=329.46  Aligned_cols=321  Identities=21%  Similarity=0.293  Sum_probs=238.0

Q ss_pred             CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Q psy6874          91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIF  170 (504)
Q Consensus        91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~  170 (504)
                      .++.+++++.++++|+++|+.+.+-   .++          .....++++||+||.++++++|++|.+.|+++||+|+++
T Consensus         6 ~~~~~~l~~~a~~~p~~~a~~~~~~---~~~----------~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~   72 (552)
T PRK09274          6 ANIARHLPRAAQERPDQLAVAVPGG---RGA----------DGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLM   72 (552)
T ss_pred             hhHHHHHHHHHHhCCCcceEEeccC---CCC----------ccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            3678899999999999999964210   000          001234579999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCC--chhHHHHHhhcCCCceEEEEEcCCCCcc
Q psy6874         171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHD--LLPKFRNILKLTPRVSTLIYMEDQLTST  248 (504)
Q Consensus       171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~--~~~~~~~~~~~~~~l~~ii~~~~~~~~~  248 (504)
                      ++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++  ....+...  ..+..+.++.++...   
T Consensus        73 ~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~---  147 (552)
T PRK09274         73 VTPSLEFFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGW--GKPSVRRLVTVGGRL---  147 (552)
T ss_pred             eCCcHHHHHHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhcc--Cccchhheecccccc---
Confidence            99999999999999999999999999999999999999999999999752  11111110  012233333332210   


Q ss_pred             cccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEE
Q psy6874         249 DTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVF  328 (504)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~  328 (504)
                             ......++++.......  ........++++++|+|||||||.||||+++|.++...+......+++.++|+.
T Consensus       148 -------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~  218 (552)
T PRK09274        148 -------LWGGTTLATLLRDGAAA--PFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEID  218 (552)
T ss_pred             -------ccCCccHHHhcccCccc--cCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCcee
Confidence                   00112344443211111  122233467899999999999999999999999999998888888899999999


Q ss_pred             EEecChHHHHHHHHHHHHHHhCCeEEEcCccc----cccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhc
Q psy6874         329 LGYLPLAHVFELLSESVCLLCGVAIGYSTPLT----MIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSR  404 (504)
Q Consensus       329 l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~----~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~  404 (504)
                      ++++|++|.+++       ..|+++++.+...    ..+..     ..++.++++++|+++++|+++.++.+.....   
T Consensus       219 ~~~~pl~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---  283 (552)
T PRK09274        219 LPTFPLFALFGP-------ALGMTSVIPDMDPTRPATVDPA-----KLFAAIERYGVTNLFGSPALLERLGRYGEAN---  283 (552)
T ss_pred             eeccCHHHhhhh-------hhCCeEEecCcccccccccCHH-----HHHHHHHHcCCeEEeccHHHHHHHHHHhhhc---
Confidence            999999987653       4577777653211    11111     1244688999999999999999987642111   


Q ss_pred             cChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh--CCceeeecccc
Q psy6874         405 ASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL--CEKVIQGYGLT  482 (504)
Q Consensus       405 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~--~~~v~~~YG~T  482 (504)
                                                            ....++||.+++||+++++++.+++++.+  |+++++.||+|
T Consensus       284 --------------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~T  325 (552)
T PRK09274        284 --------------------------------------GIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGAT  325 (552)
T ss_pred             --------------------------------------CCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEcccccc
Confidence                                                  01126899999999999999999999988  57999999999


Q ss_pred             ccccceeec
Q psy6874         483 ETTSCATVM  491 (504)
Q Consensus       483 Et~~~~~~~  491 (504)
                      |+++.++..
T Consensus       326 E~~~~~~~~  334 (552)
T PRK09274        326 EALPISSIE  334 (552)
T ss_pred             ccceeEeec
Confidence            998655543

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-36  Score=325.27  Aligned_cols=339  Identities=18%  Similarity=0.272  Sum_probs=248.7

Q ss_pred             CCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCeE
Q psy6874          89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRS-LGQEPRHNV  167 (504)
Q Consensus        89 ~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gv~~gd~V  167 (504)
                      ...|+.++|++.++.+|+++|+..                      + .+.+||+|+.++++++|+.|.+ .|+++||+|
T Consensus        22 ~~~~~~~~l~~~a~~~p~~~al~~----------------------~-~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~V   78 (562)
T PRK05677         22 EYPNIQAVLKQSCQRFADKPAFSN----------------------L-GKTLTYGELYKLSGAFAAWLQQHTDLKPGDRI   78 (562)
T ss_pred             ccCcHHHHHHHHHHhCCCCeeEEE----------------------C-CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence            345899999999999999999962                      1 1579999999999999999987 699999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCc
Q psy6874         168 VIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTS  247 (504)
Q Consensus       168 ai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~  247 (504)
                      +++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+.++... ..++.++..+.....
T Consensus        79 ai~~~n~~~~~~~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  157 (562)
T PRK05677         79 AVQLPNVLQYPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPK-TGVKHVIVTEVADML  157 (562)
T ss_pred             EEECCCCHHHHHHHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhc-cCcceeEEecccccc
Confidence            9999999999999999999999999999999999999999999999999988766555444332 234444443211000


Q ss_pred             cc---------cccc----C--CCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHH
Q psy6874         248 TD---------TTNF----K--QGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST  312 (504)
Q Consensus       248 ~~---------~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~  312 (504)
                      ..         +...    +  .......+.+.+......  ........++++++|+|||||||.||||+++|.++..+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~  235 (562)
T PRK05677        158 PPLKRLLINAVVKHVKKMVPAYHLPQAVKFNDALAKGAGQ--PVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVAN  235 (562)
T ss_pred             cchhhhhcccchhhccccccccCCcccccHHHHHhcCCCC--CCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHH
Confidence            00         0000    0  001123445544333211  22233456799999999999999999999999999887


Q ss_pred             HHhhhhccC--CC-CCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcC-ccccccchhhhccCCcccccccCCcEEEec
Q psy6874         313 LKAFSDAVH--IE-PNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYST-PLTMIDTSSKIKRGTKGDASVLHPTALTAV  387 (504)
Q Consensus       313 ~~~~~~~~~--~~-~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~~i~~~~~~~i~~~~~T~~~~v  387 (504)
                      +......+.  +. ..+++++.+|++|.+++.. .+..+..|+++++.+ +......        ++.++++++|.+.++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--------~~~i~~~~~t~~~~~  307 (562)
T PRK05677        236 MLQCRALMGSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAM--------VKELGKWKFSGFVGL  307 (562)
T ss_pred             HHHHHHHhccCCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHH--------HHHHHHcCceEEecH
Confidence            765544332  33 3478899999999999874 556777788766654 2222111        335889999999999


Q ss_pred             cHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHH
Q psy6874         388 PLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELI  467 (504)
Q Consensus       388 P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~  467 (504)
                      |.++..+.+...                                         .+....+++|.+++||+++++++.+.+
T Consensus       308 p~~~~~l~~~~~-----------------------------------------~~~~~~~~lr~v~~gG~~~~~~~~~~~  346 (562)
T PRK05677        308 NTLFVALCNNEA-----------------------------------------FRKLDFSALKLTLSGGMALQLATAERW  346 (562)
T ss_pred             HHHHHHHHhCcc-----------------------------------------cccCChhhceEEEEcCccCCHHHHHHH
Confidence            999988765210                                         000111589999999999999999999


Q ss_pred             HHHhCCceeeeccccccccceeecccCCCCCccCCC
Q psy6874         468 KVCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNG  503 (504)
Q Consensus       468 ~~~~~~~v~~~YG~TEt~~~~~~~~~~d~~~~~s~G  503 (504)
                      +..+++++++.||+||+++.++..... ....+++|
T Consensus       347 ~~~~~~~v~~~YG~tE~~~~~~~~~~~-~~~~~~vG  381 (562)
T PRK05677        347 KEVTGCAICEGYGMTETSPVVSVNPSQ-AIQVGTIG  381 (562)
T ss_pred             HHHcCCCeeccCCccccCcceeecCcc-CCCCCccC
Confidence            998899999999999988766554432 23344555

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6e-37  Score=325.24  Aligned_cols=327  Identities=20%  Similarity=0.230  Sum_probs=243.9

Q ss_pred             cCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy6874          87 RDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHN  166 (504)
Q Consensus        87 ~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~  166 (504)
                      .++..++.+++++.++++|+++|+.+.                     ++.+.+||+|+.++++++|++|.+.|+++||+
T Consensus        12 ~~~~~~l~~~l~~~a~~~p~~~ai~~~---------------------~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~   70 (534)
T PRK05852         12 SDFGPRIADLVEVAATRLPEAPALVVT---------------------ADRIAISYRDLARLVDDLAGQLTRSGLLPGDR   70 (534)
T ss_pred             hhhcccHHHHHHHHHHhCCCCcEEEec---------------------CCCCcccHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence            456678999999999999999998642                     22257999999999999999999999999999


Q ss_pred             EEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCC
Q psy6874         167 VVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLT  246 (504)
Q Consensus       167 Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~  246 (504)
                      |+|+++|+++|+++++||+++|++++|++++++.+++.+.+++++++++|++.+..........  ......+.+...  
T Consensus        71 V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--~~~~~~~~~~~~--  146 (534)
T PRK05852         71 VALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT--RWWPLTVNVGGD--  146 (534)
T ss_pred             EEEECCCcHHHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc--cccceeeeeccc--
Confidence            9999999999999999999999999999999999999999999999999998753321111000  001111111111  


Q ss_pred             cccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCc
Q psy6874         247 STDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPND  326 (504)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d  326 (504)
                      ..    ...+.....+.+.   .... ..........+++++|+|||||||.||||+++|.++...+......+.+.++|
T Consensus       147 ~~----~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d  218 (534)
T PRK05852        147 SG----PSGGTLSVHLDAA---TEPT-PATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRD  218 (534)
T ss_pred             cc----ccccccccccccc---cCCC-ccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcc
Confidence            00    0000000001110   0000 00111122357889999999999999999999999999988888888899999


Q ss_pred             EEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhcc
Q psy6874         327 VFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRA  405 (504)
Q Consensus       327 ~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~  405 (504)
                      ++++.+|++|.+++.. ++.+++.|+++++..... .+...     .+..++++++|++.++|.++..+.+......   
T Consensus       219 ~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~-~~~~~-----~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---  289 (534)
T PRK05852        219 ATVAVMPLYHGHGLIAALLATLASGGAVLLPARGR-FSAHT-----FWDDIKAVGATWYTAVPTIHQILLERAATEP---  289 (534)
T ss_pred             eEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcC-cCHHH-----HHHHHHHcCCcEEEcChHHHHHHHhhccccc---
Confidence            9999999999999885 678888899988754221 11111     1345899999999999999999876421110   


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccc
Q psy6874         406 SPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETT  485 (504)
Q Consensus       406 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~  485 (504)
                                                          .....+++|.+.+||++++++++++++..++++++++||+||++
T Consensus       290 ------------------------------------~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~  333 (534)
T PRK05852        290 ------------------------------------SGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEAT  333 (534)
T ss_pred             ------------------------------------ccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccc
Confidence                                                00012589999999999999999999999999999999999998


Q ss_pred             cceeec
Q psy6874         486 SCATVM  491 (504)
Q Consensus       486 ~~~~~~  491 (504)
                      ..++..
T Consensus       334 ~~~~~~  339 (534)
T PRK05852        334 HQVTTT  339 (534)
T ss_pred             hhhhcC
Confidence            765543

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.6e-37  Score=328.91  Aligned_cols=313  Identities=20%  Similarity=0.253  Sum_probs=243.1

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..|+.++|.+.++++|+++|+.+.                       .+.+||+||.++++++|+.|.+.|+++||+|++
T Consensus        36 ~~tl~~~l~~~a~~~p~~~Ai~~~-----------------------~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i   92 (600)
T PRK08279         36 KRSLGDVFEEAAARHPDRPALLFE-----------------------DQSISYAELNARANRYAHWAAARGVGKGDVVAL   92 (600)
T ss_pred             cccHHHHHHHHHHhCCCCcEEEeC-----------------------CCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            458999999999999999999631                       156999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD  249 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~  249 (504)
                      +++|+++++++++||+++|++++++++.++.+++.+++++++++++|++.+..+.+.++.........++..+.. ..  
T Consensus        93 ~~~n~~~~v~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--  169 (600)
T PRK08279         93 LMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGD-TL--  169 (600)
T ss_pred             ECCCCHHHHHHHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCc-cc--
Confidence            999999999999999999999999999999999999999999999999988777666554433332333333221 00  


Q ss_pred             ccccCCCceeeehhHHHhcccccCC--CCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcE
Q psy6874         250 TTNFKQGIEIVPFKQIVKRGSESGS--RYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDV  327 (504)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~  327 (504)
                             .....+.++.........  ........++++++|+|||||||.||||++||.++.+++......+.+.++|+
T Consensus       170 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~  242 (600)
T PRK08279        170 -------DDPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDV  242 (600)
T ss_pred             -------cccccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcE
Confidence                   001234444332221110  11123345689999999999999999999999999999998888889999999


Q ss_pred             EEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccC
Q psy6874         328 FLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRAS  406 (504)
Q Consensus       328 ~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~  406 (504)
                      +++++|++|.+++.. .+.++..|+++++.+.......        ++.++++++|++.++|+++..+.+.....     
T Consensus       243 ~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~--------~~~i~~~~~t~~~~~p~l~~~l~~~~~~~-----  309 (600)
T PRK08279        243 LYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRF--------WDDVRRYRATAFQYIGELCRYLLNQPPKP-----  309 (600)
T ss_pred             EEEecCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHH--------HHHHHHhcceEEeehHHHHHHHHhCCCCc-----
Confidence            999999999999885 4567788888888765432222        33578999999999999988776521000     


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCC-ceeeeccccccc
Q psy6874         407 PFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCE-KVIQGYGLTETT  485 (504)
Q Consensus       407 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~~YG~TEt~  485 (504)
                                                          .....++|.+  +|+++++++.+.+...++. .+++.||+||++
T Consensus       310 ------------------------------------~~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~  351 (600)
T PRK08279        310 ------------------------------------TDRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGN  351 (600)
T ss_pred             ------------------------------------cccCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccc
Confidence                                                0001467764  4778999999999988876 599999999986


Q ss_pred             c
Q psy6874         486 S  486 (504)
Q Consensus       486 ~  486 (504)
                      .
T Consensus       352 ~  352 (600)
T PRK08279        352 V  352 (600)
T ss_pred             e
Confidence            4

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.7e-37  Score=323.63  Aligned_cols=318  Identities=19%  Similarity=0.238  Sum_probs=247.7

Q ss_pred             CCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEE
Q psy6874          89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVV  168 (504)
Q Consensus        89 ~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Va  168 (504)
                      ...++.++|.+.++++|+++|+.+.                      + +.+||+|+.++++++|+.|++.|+++|++|+
T Consensus         5 ~~~~~~~~~~~~a~~~p~~~a~~~~----------------------~-~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~   61 (528)
T PRK07470          5 RVMNLAHFLRQAARRFPDRIALVWG----------------------D-RSWTWREIDARVDALAAALAARGVRKGDRIL   61 (528)
T ss_pred             cCCCHHHHHHHHHHHCCCceEEEEC----------------------C-ccccHHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence            3567999999999999999998631                      1 4689999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcc
Q psy6874         169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTST  248 (504)
Q Consensus       169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~  248 (504)
                      ++++|+++++++++||+++|++++++++.++.+++.++++.++++.++++++..+.+..+....+....++.++...   
T Consensus        62 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  138 (528)
T PRK07470         62 VHSRNCNQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGAR---  138 (528)
T ss_pred             EEcCCCHHHHHHHHHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCc---
Confidence            99999999999999999999999999999999999999999999999999887665555544445555666654320   


Q ss_pred             cccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhc-c-CCCCCc
Q psy6874         249 DTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA-V-HIEPND  326 (504)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~-~-~~~~~d  326 (504)
                               ....++++.......  ........++++++|+|||||||.||||.++|.++...+...... . +..++|
T Consensus       139 ---------~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d  207 (528)
T PRK07470        139 ---------AGLDYEALVARHLGA--RVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQD  207 (528)
T ss_pred             ---------ccccHHHHHhcCCCC--CCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCccc
Confidence                     123455554432111  122234567899999999999999999999999987655433222 2 567889


Q ss_pred             EEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccC
Q psy6874         327 VFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRAS  406 (504)
Q Consensus       327 ~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~  406 (504)
                      +++.++|++|++++...+ .++.|+++++.+... .+...     .++.+++++||++.++|.++..+.+....      
T Consensus       208 ~~l~~~p~~~~~~~~~~~-~~~~g~~~~~~~~~~-~~~~~-----~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------  274 (528)
T PRK07470        208 ASLVVAPLSHGAGIHQLC-QVARGAATVLLPSER-FDPAE-----VWALVERHRVTNLFTVPTILKMLVEHPAV------  274 (528)
T ss_pred             EEEEeccchhHHHHHHHH-HHhcCceEEEecccC-cCHHH-----HHHHHHhcCCeEEechHHHHHHHHhCcCc------
Confidence            999999999999987544 567787777654321 12111     14468899999999999999888652100      


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccccccc
Q psy6874         407 PFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTS  486 (504)
Q Consensus       407 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~  486 (504)
                                                         .....+++|.+++||++++++..+++...+|.++++.||+||+++
T Consensus       275 -----------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~  319 (528)
T PRK07470        275 -----------------------------------DRYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTG  319 (528)
T ss_pred             -----------------------------------CCCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCC
Confidence                                               001126899999999999999999998888999999999999987


Q ss_pred             ceeec
Q psy6874         487 CATVM  491 (504)
Q Consensus       487 ~~~~~  491 (504)
                      .++..
T Consensus       320 ~~~~~  324 (528)
T PRK07470        320 NITVL  324 (528)
T ss_pred             ceeec
Confidence            66544

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.5e-36  Score=319.22  Aligned_cols=315  Identities=20%  Similarity=0.212  Sum_probs=245.1

Q ss_pred             cHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEE
Q psy6874          92 TMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRS-LGQEPRHNVVIF  170 (504)
Q Consensus        92 tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gv~~gd~Vai~  170 (504)
                      .+.+.+++.++.+||++|+.+                       +.+.+||.|+.++++++|+.|++ .|+++|++|+++
T Consensus         3 ~~~~~~~~~a~~~p~~~a~~~-----------------------~~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~   59 (496)
T PRK06839          3 GIAYWIEKRAYLHPDRIAIIT-----------------------EEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAIL   59 (496)
T ss_pred             cHHHHHHHHHHHCCCCeEEEE-----------------------CCceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence            477899999999999999962                       22679999999999999999985 799999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcccc
Q psy6874         171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDT  250 (504)
Q Consensus       171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~  250 (504)
                      ++|+++|+++++||+++|++++|+++.++++++.++++.+++++++++++..+.+.+..... ....++.+.+       
T Consensus        60 ~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------  131 (496)
T PRK06839         60 SQNSLEYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVS-YVQRVISITS-------  131 (496)
T ss_pred             CCCCHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhcc-CcceEEEecc-------
Confidence            99999999999999999999999999999999999999999999999987665544432221 1122222221       


Q ss_pred             cccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEE
Q psy6874         251 TNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLG  330 (504)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~  330 (504)
                                 ++++....     ........++++++|+|||||||.||+|.++|.++..........+.+..+|+++.
T Consensus       132 -----------~~~~~~~~-----~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~  195 (496)
T PRK06839        132 -----------LKEIEDRK-----IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIV  195 (496)
T ss_pred             -----------hHhhhccC-----CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEE
Confidence                       22222111     11122345689999999999999999999999999877666666678889999999


Q ss_pred             ecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHH
Q psy6874         331 YLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFK  409 (504)
Q Consensus       331 ~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~  409 (504)
                      .+|++|.+++.. .+.++..|+++++.+.......        ++.++++++|++.++|.++..+.+.....        
T Consensus       196 ~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------  259 (496)
T PRK06839        196 LLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKA--------LSMIEKHKVTVVMGVPTIHQALINCSKFE--------  259 (496)
T ss_pred             eeCCcchhhHHHHHHHHHhcCcEEEEccCCCHHHH--------HHHHHhhCCeEEEehHHHHHHHHhCcccc--------
Confidence            999999999875 5688999999988754332222        34588999999999999999987631100        


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccccccccee
Q psy6874         410 RALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCAT  489 (504)
Q Consensus       410 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~  489 (504)
                                                       .....++|.+++||+++++++.+.++.. |+++.+.||+||++..++
T Consensus       260 ---------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~  305 (496)
T PRK06839        260 ---------------------------------TTNLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVF  305 (496)
T ss_pred             ---------------------------------cCCCcccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceE
Confidence                                             0112689999999999999999999886 999999999999986554


Q ss_pred             ecccCC-CCCccCCC
Q psy6874         490 VMHLND-MGNINSNG  503 (504)
Q Consensus       490 ~~~~~d-~~~~~s~G  503 (504)
                      .....+ ....+++|
T Consensus       306 ~~~~~~~~~~~~~~G  320 (496)
T PRK06839        306 MLSEEDARRKVGSIG  320 (496)
T ss_pred             ecccccccccCCCCc
Confidence            443322 22344554

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.3e-37  Score=325.93  Aligned_cols=310  Identities=16%  Similarity=0.157  Sum_probs=231.1

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..++.+.|.+.++++|+++|+...                     ++.+.+||+||.++++++|+.|.+.|+++|++|++
T Consensus        13 ~~~~~~~l~~~a~~~p~~~a~~~~---------------------~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i   71 (540)
T PRK05857         13 PSTVLDRVFEQARQQPEAIALRRC---------------------DGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLV   71 (540)
T ss_pred             CcchHHHHHHHHhhCCCcEEEeec---------------------CCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEE
Confidence            557889999999999999999532                     12246999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD  249 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~  249 (504)
                      +++|++|++++++||+++|++++|+++.++.+++.++++.++++.++++++.......+......+. ++.++... .. 
T Consensus        72 ~~~~~~e~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~-  148 (540)
T PRK05857         72 ISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIP-VIAVDIAA-VT-  148 (540)
T ss_pred             EcCCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccc-eeEeeccc-cc-
Confidence            9999999999999999999999999999999999999999999999999865322111111111222 22222210 00 


Q ss_pred             ccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhh----ccCCCCC
Q psy6874         250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD----AVHIEPN  325 (504)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~  325 (504)
                            ..    +.+......    ........++++++++|||||||.||||+++|.++.++......    .+....+
T Consensus       149 ------~~----~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~  214 (540)
T PRK05857        149 ------RE----SEHSLDAAS----LAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVG  214 (540)
T ss_pred             ------cc----ccccccccc----cccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccC
Confidence                  00    000000000    11112345689999999999999999999999999876544321    2355678


Q ss_pred             cEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhcc
Q psy6874         326 DVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRA  405 (504)
Q Consensus       326 d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~  405 (504)
                      |+.++.+|++|.+++...+.+++.|+++++.+. ....        .++.++++++|++.++|.++..+.+.....    
T Consensus       215 ~~~~~~~p~~h~~~l~~~~~~l~~G~~~v~~~~-~~~~--------~~~~i~~~~it~~~~~P~~~~~l~~~~~~~----  281 (540)
T PRK05857        215 ETTYSPLPATHIGGLWWILTCLMHGGLCVTGGE-NTTS--------LLEILTTNAVATTCLVPTLLSKLVSELKSA----  281 (540)
T ss_pred             ceeeecCCccccchHHHHHHHhhcceeEEecCC-ChhH--------HHHHHHhcCcceEEeChHHHHHHHhccccC----
Confidence            999999999999999888889999999876432 1111        134589999999999999999886632110    


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccc
Q psy6874         406 SPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETT  485 (504)
Q Consensus       406 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~  485 (504)
                                                           ....+++|.+++||++++....++++ .+++++++.||+||++
T Consensus       282 -------------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~-~~g~~i~~~YG~TE~~  323 (540)
T PRK05857        282 -------------------------------------NATVPSLRLVGYGGSRAIAADVRFIE-ATGVRTAQVYGLSETG  323 (540)
T ss_pred             -------------------------------------CCcCccceEEEEcCccCCchhHHHHH-HhCCeeecccCCCcCC
Confidence                                                 01125899999999999988876554 6799999999999997


Q ss_pred             cce
Q psy6874         486 SCA  488 (504)
Q Consensus       486 ~~~  488 (504)
                      ...
T Consensus       324 ~~~  326 (540)
T PRK05857        324 CTA  326 (540)
T ss_pred             cee
Confidence            543

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-36  Score=328.22  Aligned_cols=323  Identities=18%  Similarity=0.234  Sum_probs=238.1

Q ss_pred             CCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEE
Q psy6874          89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVV  168 (504)
Q Consensus        89 ~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Va  168 (504)
                      ...++.+++++.++.+|+++|+.+.+.        +.+      ..+.++++||+||.++++++|++|.+. +++||+|+
T Consensus        19 ~~~~l~~~l~~~a~~~~~~~a~~~~~~--------~~~------~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~   83 (631)
T PRK07769         19 PNTNLVRHVERWAKVRGDKLAYRFLDF--------STE------RDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVA   83 (631)
T ss_pred             ccCCHHHHHHHHHHhCCCCeEEEEecc--------CCC------CCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEE
Confidence            345899999999999999999864310        000      013346899999999999999999887 89999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCCeEEEec-CCCC--HHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCC--ceEEEEEcC
Q psy6874         169 IFAETRAEWMIAAQACFKQNIPVVTIY-ATLG--EEAIAHGINETEVNIVITTHDLLPKFRNILKLTPR--VSTLIYMED  243 (504)
Q Consensus       169 i~~~n~~e~~~~~lA~~~~G~~~v~i~-~~l~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--l~~ii~~~~  243 (504)
                      ++++|+++|+++++||+++|++++|++ +..+  .+++.+++++++++++|++++..+.+.+.....+.  ...++.++.
T Consensus        84 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (631)
T PRK07769         84 ILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDA  163 (631)
T ss_pred             EEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEccc
Confidence            999999999999999999999999994 4443  68899999999999999998766555444332221  122333222


Q ss_pred             CCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCC
Q psy6874         244 QLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIE  323 (504)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~  323 (504)
                      ..         .         ..  ..    ........++++++|+|||||||.||||++||+++..++......+++.
T Consensus       164 ~~---------~---------~~--~~----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~  219 (631)
T PRK07769        164 VP---------D---------EV--GA----TWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQ  219 (631)
T ss_pred             cc---------c---------cc--cc----ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCC
Confidence            10         0         00  00    1111234578999999999999999999999999998888877778889


Q ss_pred             CCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccc-cchhhhccCCcccccccCC---cEEEeccHHHHHHHHHHH
Q psy6874         324 PNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMI-DTSSKIKRGTKGDASVLHP---TALTAVPLILDRIYKGVH  399 (504)
Q Consensus       324 ~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~-~~~~~i~~~~~~~i~~~~~---T~~~~vP~~~~~l~~~~~  399 (504)
                      ++|++++++|++|++++...+.+++.|+++++.++..+. +....     +..++++++   |++.++|.++..+.+...
T Consensus       220 ~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~  294 (631)
T PRK07769        220 EGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRW-----IRELARKPGGTGGTFSAAPNFAFEHAAARG  294 (631)
T ss_pred             CcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHH-----HHHHHhhccccCceEeeCCchHHHHHHhhc
Confidence            999999999999999998777788899999987654221 22111     123555554   889999998876654200


Q ss_pred             HHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh---CC---
Q psy6874         400 EKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL---CE---  473 (504)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~---~~---  473 (504)
                        ....                                  .......++||.+++||+++++++.++++..|   |+   
T Consensus       295 --~~~~----------------------------------~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~  338 (631)
T PRK07769        295 --LPKD----------------------------------GEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPT  338 (631)
T ss_pred             --cchh----------------------------------cccCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChh
Confidence              0000                                  00001126899999999999999999998887   33   


Q ss_pred             ceeeeccccccccceeec
Q psy6874         474 KVIQGYGLTETTSCATVM  491 (504)
Q Consensus       474 ~v~~~YG~TEt~~~~~~~  491 (504)
                      +++++||+||+++.++..
T Consensus       339 ~i~~~YG~TE~~~~~~~~  356 (631)
T PRK07769        339 AIKPSYGMAEATLFVSTT  356 (631)
T ss_pred             hcccccchhhheeEEecc
Confidence            599999999987665544

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=2.7e-36  Score=318.35  Aligned_cols=314  Identities=20%  Similarity=0.274  Sum_probs=248.1

Q ss_pred             HHHHHHHH-HHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEc
Q psy6874          93 MEKVLRYV-VTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFA  171 (504)
Q Consensus        93 l~~~~~~~-~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~  171 (504)
                      ..+++.++ ++.+||++|+..                       +...+||.|+.++++++|+.|.+.|+++|++|++++
T Consensus         6 ~~~~~~~~~~~~~p~~~a~~~-----------------------~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~   62 (508)
T TIGR02262         6 AEDLLDRNVVEGRGGKTAFID-----------------------DISSLSYGELEAQVRRLGAALRRLGVKREERVLLLM   62 (508)
T ss_pred             HHHHHHHHHhcccCCceEEEe-----------------------CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEC
Confidence            45666665 677999999852                       225799999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccccc
Q psy6874         172 ETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT  251 (504)
Q Consensus       172 ~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~  251 (504)
                      +|+++|+++++||+++|++++|+++.++.+++.++++.+++++++++++..+.+.+.....+.++.++..+...      
T Consensus        63 ~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  136 (508)
T TIGR02262        63 LDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPE------  136 (508)
T ss_pred             CCCHHHHHHHHHHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCC------
Confidence            99999999999999999999999999999999999999999999999887777776666667777776664420      


Q ss_pred             ccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHh-hhhccCCCCCcEEEE
Q psy6874         252 NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKA-FSDAVHIEPNDVFLG  330 (504)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~d~~l~  330 (504)
                           .....+.++......   ...+....++++++++|||||||.||||+++|.++...+.. ....+++.++|+++.
T Consensus       137 -----~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~  208 (508)
T TIGR02262       137 -----AGEVQLAELLATESE---QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFS  208 (508)
T ss_pred             -----cccccHHHHhhcCCC---ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEE
Confidence                 111234444332211   12223445789999999999999999999999999887765 345568899999999


Q ss_pred             ecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHH
Q psy6874         331 YLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFK  409 (504)
Q Consensus       331 ~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~  409 (504)
                      .+|++|.+++.. .+.++..|+++++.+.....+  .     .++.+++++||.+.++|.++..+.+...          
T Consensus       209 ~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~--~-----~~~~i~~~~~t~~~~~P~~~~~~~~~~~----------  271 (508)
T TIGR02262       209 AAKLFFAYGLGNALTFPMSVGATTVLMGERPTPD--A-----VFDRLRRHQPTIFYGVPTLYAAMLADPN----------  271 (508)
T ss_pred             cCchHHHHHHHHHHHHHHHcCceEEEeCCCCCHH--H-----HHHHHHHHCCcEEecchHHHHHHhcCcc----------
Confidence            999999999864 567889999998865431111  1     1345889999999999998877654200          


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccccccccee
Q psy6874         410 RALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCAT  489 (504)
Q Consensus       410 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~  489 (504)
                                                     .+...++++|.+++||+++++++.+.++..+++++++.||+||+++.++
T Consensus       272 -------------------------------~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~  320 (508)
T TIGR02262       272 -------------------------------LPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFL  320 (508)
T ss_pred             -------------------------------ccccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceee
Confidence                                           0001125899999999999999999999999999999999999987555


Q ss_pred             ec
Q psy6874         490 VM  491 (504)
Q Consensus       490 ~~  491 (504)
                      ..
T Consensus       321 ~~  322 (508)
T TIGR02262       321 SN  322 (508)
T ss_pred             cC
Confidence            44

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.3e-36  Score=321.26  Aligned_cols=314  Identities=18%  Similarity=0.225  Sum_probs=237.2

Q ss_pred             CCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEE
Q psy6874          89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVV  168 (504)
Q Consensus        89 ~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Va  168 (504)
                      ...++.+.|.++++.+|+++|+.+.                       ...+||.|+.++++++|++|++.|+++||+|+
T Consensus        33 ~~~~~~~~~~~~a~~~p~~~a~~~~-----------------------~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~   89 (516)
T PRK13383         33 GGTNPYTLLAVTAARWPGRTAIIDD-----------------------DGALSYRELQRATESLARRLTRDGVAPGRAVG   89 (516)
T ss_pred             cCCcHHHHHHHHHHHCCCCcEEEeC-----------------------CCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            3567899999999999999998521                       14699999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcc
Q psy6874         169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTST  248 (504)
Q Consensus       169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~  248 (504)
                      ++++|+++++++++||+++|++++|+++.++.+++.++++++++++++++++..+.+....      ..++.++..  . 
T Consensus        90 i~~~~~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~------~~~~~~~~~--~-  160 (516)
T PRK13383         90 VMCRNGRGFVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD------DAVAVIDPA--T-  160 (516)
T ss_pred             EECCCCHHHHHHHHHHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh------cceEEeccc--h-
Confidence            9999999999999999999999999999999999999999999999999987655443321      112222211  0 


Q ss_pred             cccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHH--HHHHhhhhccCCCCCc
Q psy6874         249 DTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMI--STLKAFSDAVHIEPND  326 (504)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~--~~~~~~~~~~~~~~~d  326 (504)
                                    ...  .      .....+...++.++|+|||||||.||||+++|....  ..........++.++|
T Consensus       161 --------------~~~--~------~~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d  218 (516)
T PRK13383        161 --------------AGA--E------ESGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGS  218 (516)
T ss_pred             --------------hhh--h------cCCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCC
Confidence                          000  0      000111234567899999999999999999997432  1122223345778899


Q ss_pred             EEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccC
Q psy6874         327 VFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRAS  406 (504)
Q Consensus       327 ~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~  406 (504)
                      +++..+|++|.+++...+.++..|+++++.........        ++.++++++|.+.++|.++..+.+.......   
T Consensus       219 ~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---  287 (516)
T PRK13383        219 RISVAMPMFHGLGLGMLMLTIALGGTVLTHRHFDAEAA--------LAQASLHRADAFTAVPVVLARILELPPRVRA---  287 (516)
T ss_pred             eEEEecCCcchhhHHHHHHHHhcCCEEEECCCCCHHHH--------HHHHHHhCCcEEEecHHHHHHHHhccccccc---
Confidence            99999999999999888888999999987654322221        3357889999999999999888653211000   


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccccccc
Q psy6874         407 PFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTS  486 (504)
Q Consensus       407 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~  486 (504)
                                                          ....+++|.+++||+++++++.+++.+.+++++++.||+||++.
T Consensus       288 ------------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~  331 (516)
T PRK13383        288 ------------------------------------RNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGI  331 (516)
T ss_pred             ------------------------------------cCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhccccccccc
Confidence                                                00115899999999999999999999999999999999999976


Q ss_pred             ceeecccCCCCCccCCC
Q psy6874         487 CATVMHLNDMGNINSNG  503 (504)
Q Consensus       487 ~~~~~~~~d~~~~~s~G  503 (504)
                      .............+++|
T Consensus       332 ~~~~~~~~~~~~~~~~G  348 (516)
T PRK13383        332 GALATPADLRDAPETVG  348 (516)
T ss_pred             ceeccccccccCCCccc
Confidence            54443322233344555

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=3.1e-36  Score=320.60  Aligned_cols=317  Identities=19%  Similarity=0.254  Sum_probs=242.7

Q ss_pred             CCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeE
Q psy6874          88 DGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNV  167 (504)
Q Consensus        88 ~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V  167 (504)
                      +...|+.+++.+.++.+|+++|+.+.                     .+.+.+||+||.++++++|+.|.+.|+++||+|
T Consensus        25 ~~~~~~~~~l~~~a~~~p~~~a~~~~---------------------~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V   83 (546)
T PLN02330         25 PDKLTLPDFVLQDAELYADKVAFVEA---------------------VTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVV   83 (546)
T ss_pred             CCCCcHHHHHhhhhhcCCCccEEEec---------------------CCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEE
Confidence            34568999999999999999998531                     112579999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCc
Q psy6874         168 VIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTS  247 (504)
Q Consensus       168 ai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~  247 (504)
                      +++++|+++++++++||+++|++++|+++..+.+++.++++++++++++++++..+.+...     .. .++.++...  
T Consensus        84 ~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~-----~~-~~i~~~~~~--  155 (546)
T PLN02330         84 VVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL-----GL-PVIVLGEEK--  155 (546)
T ss_pred             EEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhc-----CC-cEEEecCCC--
Confidence            9999999999999999999999999999999999999999999999999998876655432     11 233443220  


Q ss_pred             ccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhcc--CCCCC
Q psy6874         248 TDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV--HIEPN  325 (504)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~  325 (504)
                              ......|+++++...............++++++++|||||||.||||+++|.++..++.......  .....
T Consensus       156 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~  227 (546)
T PLN02330        156 --------IEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQ  227 (546)
T ss_pred             --------CCCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCc
Confidence                    01224466665443221111122334568999999999999999999999999987765422112  12245


Q ss_pred             cEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhc
Q psy6874         326 DVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSR  404 (504)
Q Consensus       326 d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~  404 (504)
                      ++++..+|++|.+++.. .+.++..|+++++.+.......        +..++++++|.+.++|.++..+.+...     
T Consensus       228 ~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~--------~~~i~~~~vt~~~~~P~~~~~l~~~~~-----  294 (546)
T PLN02330        228 VVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTF--------LNALITQEVSFAPIVPPIILNLVKNPI-----  294 (546)
T ss_pred             eEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHH--------HHHHHHcCCeeeecCCHHHHHHHhCcc-----
Confidence            78999999999999875 5678899999998765443332        345889999999999999998865210     


Q ss_pred             cChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeeccccc
Q psy6874         405 ASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTE  483 (504)
Q Consensus       405 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TE  483 (504)
                                                  .+.+.+.      ..++|.+++||+++++++.++++..| ++++++.||+||
T Consensus       295 ----------------------------~~~~~~~------~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE  340 (546)
T PLN02330        295 ----------------------------VEEFDLS------KLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTE  340 (546)
T ss_pred             ----------------------------ccccccc------hheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccccc
Confidence                                        0000000      02689999999999999999999988 899999999999


Q ss_pred             cccce
Q psy6874         484 TTSCA  488 (504)
Q Consensus       484 t~~~~  488 (504)
                      +++..
T Consensus       341 ~~~~~  345 (546)
T PLN02330        341 HSCIT  345 (546)
T ss_pred             cccce
Confidence            87544

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=2.5e-36  Score=320.55  Aligned_cols=311  Identities=17%  Similarity=0.224  Sum_probs=242.9

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..++.++|+++++  |+++|+.+.                      + +.+||.|+.++++++|+.|.+.|+++|++|++
T Consensus        24 ~~~~~~~~~~~a~--p~~~a~~~~----------------------~-~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v   78 (536)
T PRK10946         24 DLPLTDILTRHAA--SDAIAVICG----------------------E-RQFSYRELNQASDNLACSLRRQGIKPGDTALV   78 (536)
T ss_pred             CccHHHHHHHhhC--CCCeEEEeC----------------------C-CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            3478899988886  999999632                      1 56999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch-----hHHHHHhhcCCCceEEEEEcCC
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL-----PKFRNILKLTPRVSTLIYMEDQ  244 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~~  244 (504)
                      +++|+++|+++++||+++|++++++.+....+++.++++++++++++++++..     .....+....+.++.++..+..
T Consensus        79 ~~~n~~~~~~~~la~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  158 (536)
T PRK10946         79 QLGNVAEFYITFFALLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDD  158 (536)
T ss_pred             ECCChHHHHHHHHHHHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCC
Confidence            99999999999999999999888777777888999999999999999986521     1122333344555555544321


Q ss_pred             CCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCC
Q psy6874         245 LTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEP  324 (504)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~  324 (504)
                                   ....+.+.++....   ..+.....++++++++|||||||.||||++||+++...+......+.+.+
T Consensus       159 -------------~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~  222 (536)
T PRK10946        159 -------------GEHSLDDAINHPAE---DFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTP  222 (536)
T ss_pred             -------------CCccHHHHhhCccc---ccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCC
Confidence                         11223444332221   12223446789999999999999999999999999999988888888999


Q ss_pred             CcEEEEecChHHHHHHH--HHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHH
Q psy6874         325 NDVFLGYLPLAHVFELL--SESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKV  402 (504)
Q Consensus       325 ~d~~l~~lPl~h~~~~~--~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~  402 (504)
                      +|++++.+|++|.+++.  ..+.++..|+++++.+.......        +..++++++|++.++|.++..+.+......
T Consensus       223 ~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~--------~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~  294 (536)
T PRK10946        223 QTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSATLC--------FPLIEKHQVNVTALVPPAVSLWLQAIAEGG  294 (536)
T ss_pred             CceEEEecCccccccchhhhHHHHhhcCcEEEECCCCCHHHH--------HHHHHHhCCcEEEeChHHHHHHHhhhcccC
Confidence            99999999999998876  36788999999998754433222        234889999999999999998876431110


Q ss_pred             hccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccc
Q psy6874         403 SRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLT  482 (504)
Q Consensus       403 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~T  482 (504)
                      ..                                       ...+++|.+++||+++++++.+.+...+|++++++||+|
T Consensus       295 ~~---------------------------------------~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~t  335 (536)
T PRK10946        295 SR---------------------------------------AQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMA  335 (536)
T ss_pred             cc---------------------------------------ccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeeccc
Confidence            00                                       011589999999999999999999988999999999999


Q ss_pred             ccccce
Q psy6874         483 ETTSCA  488 (504)
Q Consensus       483 Et~~~~  488 (504)
                      |++...
T Consensus       336 E~~~~~  341 (536)
T PRK10946        336 EGLVNY  341 (536)
T ss_pred             ccceee
Confidence            975443

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4e-36  Score=320.68  Aligned_cols=323  Identities=21%  Similarity=0.321  Sum_probs=246.6

Q ss_pred             CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Q psy6874          91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIF  170 (504)
Q Consensus        91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~  170 (504)
                      .++.++|++.++++|+++|+.+.+                     ..+.+||+|+.++++++|++|.+.|+++||+|+++
T Consensus        18 ~~l~~~l~~~~~~~p~~~a~~~~~---------------------~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~   76 (558)
T PRK12583         18 QTIGDAFDATVARFPDREALVVRH---------------------QALRYTWRQLADAVDRLARGLLALGVQPGDRVGIW   76 (558)
T ss_pred             CcHHHHHHHHHHHCCCCeEEEecC---------------------CCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            479999999999999999997532                     22579999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch-----hHHHHHhhc-------------C
Q psy6874         171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL-----PKFRNILKL-------------T  232 (504)
Q Consensus       171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~-------------~  232 (504)
                      ++|+++|+++++||+++|++++++++.++.+++.+++++++++++|+++...     ..+.+....             .
T Consensus        77 ~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (558)
T PRK12583         77 APNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERL  156 (558)
T ss_pred             CCCChHHHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccC
Confidence            9999999999999999999999999999999999999999999999986532     222222111             2


Q ss_pred             CCceEEEEEcCCCCcccccccCCCceeeehhHHHhcccccCC---CCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHH
Q psy6874         233 PRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGS---RYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNM  309 (504)
Q Consensus       233 ~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l  309 (504)
                      +.++.++..+...          ......|+++.........   ........++++++++|||||||.||||.++|.++
T Consensus       157 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l  226 (558)
T PRK12583        157 PELRGVVSLAPAP----------PPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNI  226 (558)
T ss_pred             CcceEEEEecCCC----------CccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHH
Confidence            3334444433220          0122345554433221100   11122345789999999999999999999999999


Q ss_pred             HHHHHhhhhccCCCCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEecc
Q psy6874         310 ISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVP  388 (504)
Q Consensus       310 ~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP  388 (504)
                      .+++......+++.++|++++.+|++|.++... .+.++..|+++++.....  +....     +..++++++|++.++|
T Consensus       227 ~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~--~~~~~-----~~~i~~~~~t~l~~~P  299 (558)
T PRK12583        227 LNNGYFVAESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAF--DPLAT-----LQAVEEERCTALYGVP  299 (558)
T ss_pred             HHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCC--CHHHH-----HHHHHHcCCeEEeccH
Confidence            998888877888999999999999999999874 678899999998753221  11111     3358899999999999


Q ss_pred             HHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHH
Q psy6874         389 LILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIK  468 (504)
Q Consensus       389 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~  468 (504)
                      .++..+.+....                                         .....+++|.+++||+++++++.+++.
T Consensus       300 ~~~~~l~~~~~~-----------------------------------------~~~~~~~lr~i~~~G~~~~~~~~~~~~  338 (558)
T PRK12583        300 TMFIAELDHPQR-----------------------------------------GNFDLSSLRTGIMAGAPCPIEVMRRVM  338 (558)
T ss_pred             HHHHHHHccccc-----------------------------------------cCCCchhheEEEecCCCCCHHHHHHHH
Confidence            998776542100                                         001125899999999999999999998


Q ss_pred             HHhC-Cceeeeccccccccceeecc
Q psy6874         469 VCLC-EKVIQGYGLTETTSCATVMH  492 (504)
Q Consensus       469 ~~~~-~~v~~~YG~TEt~~~~~~~~  492 (504)
                      ..++ .++.+.||+||+++.++...
T Consensus       339 ~~~~~~~i~~~YG~tE~~~~~~~~~  363 (558)
T PRK12583        339 DEMHMAEVQIAYGMTETSPVSLQTT  363 (558)
T ss_pred             HHcCCcceeccccccccccceeccC
Confidence            8775 57999999999987666543

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.1e-36  Score=318.15  Aligned_cols=315  Identities=18%  Similarity=0.191  Sum_probs=248.6

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..|+.++|.++++++|+++|+.+.                      + +.+||+|+.+.++++++.|.+.|+++|++|++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~a~~~~----------------------~-~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i   67 (524)
T PRK06188         11 GATYGHLLVSALKRYPDRPALVLG----------------------D-TRLTYGQLADRISRYIQAFEALGLGTGDAVAL   67 (524)
T ss_pred             CccHHHHHHHHHHHCCCCeEEEEC----------------------C-CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            448999999999999999999631                      1 57999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCC-chhHHHHHhhcCCCceEEEEEcCCCCcc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHD-LLPKFRNILKLTPRVSTLIYMEDQLTST  248 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~l~~ii~~~~~~~~~  248 (504)
                      +++|+++++++++||++.|++++|+++..+.+++.++++.++++.+++++. ....+.+.....+.+.+++.++...   
T Consensus        68 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  144 (524)
T PRK06188         68 LSLNRPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVP---  144 (524)
T ss_pred             ECCCCHHHHHHHHHHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCcc---
Confidence            999999999999999999999999999999999999999999999999876 4444444444445555555554320   


Q ss_pred             cccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEE
Q psy6874         249 DTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVF  328 (504)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~  328 (504)
                                  ...++.................++++++|+|||||||.||+|.++|.++.+.+......+.+..+|++
T Consensus       145 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~  212 (524)
T PRK06188        145 ------------DGVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRF  212 (524)
T ss_pred             ------------chhhHHHhhhccCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEE
Confidence                        01111111110000111112345679999999999999999999999999998888888889999999


Q ss_pred             EEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChH
Q psy6874         329 LGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPF  408 (504)
Q Consensus       329 l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~  408 (504)
                      ++.+|++|.+++. .+.+++.|+++++.+.......        +..++++++|++.++|.++..+.+.....       
T Consensus       213 l~~~pl~~~~g~~-~~~~l~~G~~~~~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~l~~l~~~~~~~-------  276 (524)
T PRK06188        213 LMCTPLSHAGGAF-FLPTLLRGGTVIVLAKFDPAEV--------LRAIEEQRITATFLVPTMIYALLDHPDLR-------  276 (524)
T ss_pred             EEecCchhhhhHH-HHHHHHcCCEEEEcCCCCHHHH--------HHHHHHhCCEEEEehHHHHHHHHhCcCcc-------
Confidence            9999999998875 5678999999999875432222        34588999999999999998887631100       


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccce
Q psy6874         409 KRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCA  488 (504)
Q Consensus       409 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~  488 (504)
                                                        ....+++|.+++||++++++..+.+.+.+++.++++||+||++..+
T Consensus       277 ----------------------------------~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~  322 (524)
T PRK06188        277 ----------------------------------TRDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVI  322 (524)
T ss_pred             ----------------------------------CCCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCce
Confidence                                              0112689999999999999988888778899999999999997665


Q ss_pred             eecc
Q psy6874         489 TVMH  492 (504)
Q Consensus       489 ~~~~  492 (504)
                      +...
T Consensus       323 ~~~~  326 (524)
T PRK06188        323 TYLR  326 (524)
T ss_pred             eecC
Confidence            5543

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=3.2e-36  Score=321.54  Aligned_cols=338  Identities=20%  Similarity=0.293  Sum_probs=244.4

Q ss_pred             CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCeEEE
Q psy6874          91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSL-GQEPRHNVVI  169 (504)
Q Consensus        91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gv~~gd~Vai  169 (504)
                      .++.++|+++++++|+++|+...                       .+.+||.||.++++++|+.|.+. |+++||+|++
T Consensus        24 ~~~~~~l~~~~~~~p~~~a~~~~-----------------------~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i   80 (562)
T PRK12492         24 KSVVEVFERSCKKFADRPAFSNL-----------------------GVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAV   80 (562)
T ss_pred             CcHHHHHHHHHHhCCCCeeEecC-----------------------CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            47889999999999999998531                       15799999999999999999984 9999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEc--CCCCc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYME--DQLTS  247 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~--~~~~~  247 (504)
                      +++|++||+++++||+++|++++|+++..+.+++.+++++++++++++++...+.+..+... ...+.++...  +....
T Consensus        81 ~~~n~~e~~~~~la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  159 (562)
T PRK12492         81 QMPNVLQYPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPD-TGIEYLIEAKMGDLLPA  159 (562)
T ss_pred             ECCCCHHHHHHHHHHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhc-cCceEEEeechhhcccc
Confidence            99999999999999999999999999999999999999999999999987665544433222 1222222111  00000


Q ss_pred             cc-----------ccccC-C-CceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHH
Q psy6874         248 TD-----------TTNFK-Q-GIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLK  314 (504)
Q Consensus       248 ~~-----------~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~  314 (504)
                      ..           ....+ . ......|+++.......  .........+++++|+|||||||.||||+++|+|+...+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~  237 (562)
T PRK12492        160 AKGWLVNTVVDKVKKMVPAYHLPQAVPFKQALRQGRGL--SLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANML  237 (562)
T ss_pred             ccchhcccccccccccccccCCcccccHHHHHhccCCC--CCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHH
Confidence            00           00000 0 01224566655433211  1222345678999999999999999999999999987776


Q ss_pred             hhhhccC---------CCC-CcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcC-ccccccchhhhccCCcccccccCCc
Q psy6874         315 AFSDAVH---------IEP-NDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYST-PLTMIDTSSKIKRGTKGDASVLHPT  382 (504)
Q Consensus       315 ~~~~~~~---------~~~-~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~~i~~~~~~~i~~~~~T  382 (504)
                      .....+.         +.. ++++++.+|++|++++.. .+..+..|+++++.. +......        +..++++++|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~--------~~~i~~~~~t  309 (562)
T PRK12492        238 QVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGF--------IKELGKWRFS  309 (562)
T ss_pred             HHHHHHhcccccccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHH--------HHHHHHhCCc
Confidence            5544332         233 467899999999999875 556677788766543 2222111        2358899999


Q ss_pred             EEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHH
Q psy6874         383 ALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPD  462 (504)
Q Consensus       383 ~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~  462 (504)
                      ++.++|.++..+.+...                                         ......+++|.+++||++++++
T Consensus       310 ~~~~~p~~~~~l~~~~~-----------------------------------------~~~~~~~~lr~~~~gG~~~~~~  348 (562)
T PRK12492        310 ALLGLNTLFVALMDHPG-----------------------------------------FKDLDFSALKLTNSGGTALVKA  348 (562)
T ss_pred             eeeCcHHHHHHHHhCcC-----------------------------------------cccccccceeEEEeccccCCHH
Confidence            99999999988765210                                         0001125899999999999999


Q ss_pred             HHHHHHHHhCCceeeeccccccccceeecccCCCCCccCCC
Q psy6874         463 THELIKVCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNG  503 (504)
Q Consensus       463 ~~~~~~~~~~~~v~~~YG~TEt~~~~~~~~~~d~~~~~s~G  503 (504)
                      +.++++..++++++++||+||+++.++.....+....+++|
T Consensus       349 ~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G  389 (562)
T PRK12492        349 TAERWEQLTGCTIVEGYGLTETSPVASTNPYGELARLGTVG  389 (562)
T ss_pred             HHHHHHHHhCCceeeccCccccCceeeecCCcccccCCccc
Confidence            99999988999999999999998766655443333444554

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-35  Score=315.19  Aligned_cols=319  Identities=19%  Similarity=0.249  Sum_probs=248.3

Q ss_pred             cHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEc
Q psy6874          92 TMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFA  171 (504)
Q Consensus        92 tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~  171 (504)
                      |+.+++++.++++|+++|+.+.                       .+.+||.|+.++++++|+.|.+.|+++||+|++++
T Consensus         4 ~l~~~~~~~a~~~p~~~a~~~~-----------------------~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~   60 (533)
T PRK07798          4 NIADLFEAVADAVPDRVALVCG-----------------------DRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYA   60 (533)
T ss_pred             cHHHHHHHHHHhCCCceEEEEC-----------------------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence            6889999999999999999632                       25799999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccccc
Q psy6874         172 ETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT  251 (504)
Q Consensus       172 ~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~  251 (504)
                      +|+++|+++++||+++|++++|+++.++.+++.++++++++++++++.+..+.+.++....+..+.++.++.....    
T Consensus        61 ~n~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  136 (533)
T PRK07798         61 RNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGN----  136 (533)
T ss_pred             CCCHHHHHHHHHHHhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCccc----
Confidence            9999999999999999999999999999999999999999999999988777777766666677777776643110    


Q ss_pred             ccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhc---------cCC
Q psy6874         252 NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA---------VHI  322 (504)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~---------~~~  322 (504)
                        +......+++++++.....   .... ...++.++|+|||||||.||+|+++|.++..........         ..+
T Consensus       137 --~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (533)
T PRK07798        137 --DLLPGAVDYEDALAAGSPE---RDFG-ERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEEL  210 (533)
T ss_pred             --ccCCccccHHHHHhccCCc---CCCC-CCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhh
Confidence              0011345677766543221   1111 223455799999999999999999999987655432221         111


Q ss_pred             ------CCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHH-H
Q psy6874         323 ------EPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRI-Y  395 (504)
Q Consensus       323 ------~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l-~  395 (504)
                            ..+|+++..+|++|..++...+.+++.|+++++.+.. ..+....     +..++++++|.+.++|..+... .
T Consensus       211 ~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~-----~~~i~~~~~t~~~~~~~~~~~~l~  284 (533)
T PRK07798        211 AKRAAAGPGMRRFPAPPLMHGAGQWAAFAALFSGQTVVLLPDV-RFDADEV-----WRTIEREKVNVITIVGDAMARPLL  284 (533)
T ss_pred             cccccCCCCceEEEecchhhhhhHHHHHHHHhcCceEEEecCC-CcCHHHH-----HHHHHHhCCeEEEechHHHHHHHH
Confidence                  5679999999999999999888999999999998743 2222222     3458899999999999876543 2


Q ss_pred             HHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCc
Q psy6874         396 KGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEK  474 (504)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~  474 (504)
                      +... .                                       .......++|.+++||+++++++.++++..+ +++
T Consensus       285 ~~~~-~---------------------------------------~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~  324 (533)
T PRK07798        285 DALE-A---------------------------------------RGPYDLSSLFAIASGGALFSPSVKEALLELLPNVV  324 (533)
T ss_pred             HHhc-c---------------------------------------cccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCe
Confidence            2111 0                                       0011226899999999999999999999888 889


Q ss_pred             eeeecccccccccee
Q psy6874         475 VIQGYGLTETTSCAT  489 (504)
Q Consensus       475 v~~~YG~TEt~~~~~  489 (504)
                      +++.||+||++....
T Consensus       325 ~~~~YG~tE~~~~~~  339 (533)
T PRK07798        325 LTDSIGSSETGFGGS  339 (533)
T ss_pred             EEeeecccccccccc
Confidence            999999999865443

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=1.1e-36  Score=355.05  Aligned_cols=305  Identities=18%  Similarity=0.237  Sum_probs=246.3

Q ss_pred             CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Q psy6874          91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIF  170 (504)
Q Consensus        91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~  170 (504)
                      .++.++|++.++.+|+++|+.+.                       .+.+||+||.++++++|+.|.+.|+++|++|+++
T Consensus       458 ~~l~~~~~~~~~~~p~~~Al~~~-----------------------~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~  514 (1296)
T PRK10252        458 TTLSALVAQQAAKTPDAPALADA-----------------------RYQFSYREMREQVVALANLLRERGVKPGDSVAVA  514 (1296)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEcC-----------------------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            57999999999999999999632                       1569999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcccc
Q psy6874         171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDT  250 (504)
Q Consensus       171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~  250 (504)
                      ++|+++++++++||+++|++++|++++++.+++.++++++++++++++.+....+..    .+.+.. +..+        
T Consensus       515 ~~~~~~~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~----~~~~~~-~~~~--------  581 (1296)
T PRK10252        515 LPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFAD----VPDLTS-LCYN--------  581 (1296)
T ss_pred             eCCCHHHHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhccc----CCCcee-eecc--------
Confidence            999999999999999999999999999999999999999999999999875443321    111110 1011        


Q ss_pred             cccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEE
Q psy6874         251 TNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLG  330 (504)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~  330 (504)
                                   +......    ..+.....++++++|+|||||||.||||+++|+++++.+.+....+++.++|++++
T Consensus       582 -------------~~~~~~~----~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~  644 (1296)
T PRK10252        582 -------------APLAPQG----AAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQ  644 (1296)
T ss_pred             -------------ccccccc----CCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEE
Confidence                         0000000    11112235789999999999999999999999999999999988899999999999


Q ss_pred             ecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHH
Q psy6874         331 YLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKR  410 (504)
Q Consensus       331 ~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~  410 (504)
                      ..|++|..++..++.+|+.|+++++.++....+....     .+.++++++|++.++|+++..+.+.......       
T Consensus       645 ~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~-----~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~-------  712 (1296)
T PRK10252        645 KTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAM-----QQFFAEYGVTTTHFVPSMLAAFVASLTPEGA-------  712 (1296)
T ss_pred             eCCcchhhhHHHHHHHHhCCCEEEECChhccCCHHHH-----HHHHHHcCCeEEEeCHHHHHHHHhhhccccc-------
Confidence            9999999998888999999999999776544443222     2358899999999999999887653211000       


Q ss_pred             HHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccceee
Q psy6874         411 ALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATV  490 (504)
Q Consensus       411 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~~  490 (504)
                                                      .....++|.+++||+++++++.+.++..++++++|.||+||++..++.
T Consensus       713 --------------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~  760 (1296)
T PRK10252        713 --------------------------------RQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSW  760 (1296)
T ss_pred             --------------------------------cccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeee
Confidence                                            001158999999999999999999998889999999999999876665


Q ss_pred             cc
Q psy6874         491 MH  492 (504)
Q Consensus       491 ~~  492 (504)
                      ..
T Consensus       761 ~~  762 (1296)
T PRK10252        761 YP  762 (1296)
T ss_pred             ee
Confidence            43

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=8.2e-36  Score=317.04  Aligned_cols=327  Identities=23%  Similarity=0.288  Sum_probs=242.6

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..++.++|+++++.+|+++|+.+.                       .+.+||.||.++++++|++|.+.|+++||+|++
T Consensus        20 ~~~~~~~~~~~~~~~p~~~a~~~~-----------------------~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i   76 (541)
T TIGR03205        20 RGTLPDLLSKAAADYGPRPALEFR-----------------------DRPITYTELEAMAETAAAALLRAGYGKDASVAL   76 (541)
T ss_pred             CCCHHHHHHHHHHHcCCCceEEEC-----------------------CcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            447999999999999999998532                       157999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCc--hhHHHHHhhcCCCceEEEEEcCCCC-
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDL--LPKFRNILKLTPRVSTLIYMEDQLT-  246 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~l~~ii~~~~~~~-  246 (504)
                      +++|+++++++++||+++|++++|+++.++.+++.+++++++++++++++..  .+.+.+.... ..+..+++.+.... 
T Consensus        77 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  155 (541)
T TIGR03205        77 YLGNTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK-GLLDRLIVCEDDNWG  155 (541)
T ss_pred             ECCCChHHHHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc-ccceEEEEecccccc
Confidence            9999999999999999999999999999999999999999999999998631  1212221111 12334444433200 


Q ss_pred             cc--cccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhh-----c
Q psy6874         247 ST--DTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD-----A  319 (504)
Q Consensus       247 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~-----~  319 (504)
                      ..  .....+.......++++++....   ........++++++++|||||||.||||+++|.++.........     .
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~  232 (541)
T TIGR03205       156 KVGTPQAPIPADPRIVTYADFVKGAAA---PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSR  232 (541)
T ss_pred             cccccccccCCCcccccHHHHHhcCCC---CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhccccc
Confidence            00  00011222345667777653221   11122356789999999999999999999999998765542211     1


Q ss_pred             cCCCCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHH
Q psy6874         320 VHIEPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGV  398 (504)
Q Consensus       320 ~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~  398 (504)
                      ......|++++.+|++|.+++.. .+.++..|+++.+.........        +..++++++|++.++|.++..+.+..
T Consensus       233 ~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~  304 (541)
T TIGR03205       233 ATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAV--------FRDIEEKRATVFPGVPTMWIALANDP  304 (541)
T ss_pred             ccCCCCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHH--------HHHHHHcCCeEeechHHHHHHHHhCc
Confidence            12234589999999999999875 6678889999887654322221        34588999999999999998875421


Q ss_pred             HHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeee
Q psy6874         399 HEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQG  478 (504)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~  478 (504)
                      .                                         ......+++|.+++||+++++++.++++..+++++++.
T Consensus       305 ~-----------------------------------------~~~~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~  343 (541)
T TIGR03205       305 S-----------------------------------------LEKRDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSG  343 (541)
T ss_pred             c-----------------------------------------ccccCccccceEEEccccCCHHHHHHHHHHhCCCeecc
Confidence            0                                         00001158999999999999999999998889999999


Q ss_pred             ccccccccceeecc
Q psy6874         479 YGLTETTSCATVMH  492 (504)
Q Consensus       479 YG~TEt~~~~~~~~  492 (504)
                      ||+||++..++...
T Consensus       344 YG~TE~~~~~~~~~  357 (541)
T TIGR03205       344 WGMTETCSPGTGHP  357 (541)
T ss_pred             cccccCCcccccCC
Confidence            99999987665543

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.9e-36  Score=331.34  Aligned_cols=296  Identities=18%  Similarity=0.232  Sum_probs=231.3

Q ss_pred             cHHHHHHHHHHh--CCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          92 TMEKVLRYVVTR--FSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        92 tl~~~~~~~~~~--~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ++.+++.+++..  +||++|+..                      +  ..+||+||+++++++|+.|.+.|+++|++|+|
T Consensus         5 ~~~~~~~~~a~~~~~pd~~a~~~----------------------~--~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i   60 (705)
T PRK06060          5 NLAGLLAEQASEAGWYDRPAFYA----------------------A--DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLL   60 (705)
T ss_pred             CHHHHHHHHHhhccCCCceEEEe----------------------c--CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            688999888876  799999852                      1  25999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD  249 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~  249 (504)
                      +++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+...        .++          
T Consensus        61 ~~~~~~~~~~~~la~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~--------~~~----------  122 (705)
T PRK06060         61 CLPDSPDLVQLLLACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS--------RVA----------  122 (705)
T ss_pred             ECCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc--------ccc----------
Confidence            99999999999999999999999999999999999999999999999987643322110        000          


Q ss_pred             ccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhh-hccCCCCCcEE
Q psy6874         250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS-DAVHIEPNDVF  328 (504)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~-~~~~~~~~d~~  328 (504)
                                 ...++....... ......+..++++++++|||||||.||||+++|.|+.+.+..+. ..+.+.++|++
T Consensus       123 -----------~~~~~~~~~~~~-~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~  190 (705)
T PRK06060        123 -----------EAAELMSEAARV-APGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTG  190 (705)
T ss_pred             -----------hhhhhhhhcccc-CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCccee
Confidence                       011111110000 01111234568999999999999999999999999988876654 45688899999


Q ss_pred             EEecChHHHHHHH-HHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccCh
Q psy6874         329 LGYLPLAHVFELL-SESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASP  407 (504)
Q Consensus       329 l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~  407 (504)
                      ++..|++|.+++. .++.++..|+++++.+.....+.  .     ...+++++||+++++|.++.++.+....       
T Consensus       191 l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~--~-----~~~i~~~~~t~~~~~P~~l~~l~~~~~~-------  256 (705)
T PRK06060        191 LCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEA--A-----AILSARFGPSVLYGVPNFFARVIDSCSP-------  256 (705)
T ss_pred             EEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCHHH--H-----HHHHHhcCCeEEeeHHHHHHHHHHhccc-------
Confidence            9999999998875 46788999999998753221111  1     2247789999999999999888653110       


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeecccccccc
Q psy6874         408 FKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTS  486 (504)
Q Consensus       408 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~  486 (504)
                                                          ...+++|.+++||+++++++.+.+...+ ++++++.||+||++.
T Consensus       257 ------------------------------------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~  300 (705)
T PRK06060        257 ------------------------------------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQ  300 (705)
T ss_pred             ------------------------------------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCc
Confidence                                                0015899999999999999999998888 589999999999975


Q ss_pred             ceeec
Q psy6874         487 CATVM  491 (504)
Q Consensus       487 ~~~~~  491 (504)
                      .....
T Consensus       301 ~~~~~  305 (705)
T PRK06060        301 TFVSN  305 (705)
T ss_pred             eEEec
Confidence            54433

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=5.4e-36  Score=319.77  Aligned_cols=322  Identities=23%  Similarity=0.341  Sum_probs=247.5

Q ss_pred             CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Q psy6874          91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIF  170 (504)
Q Consensus        91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~  170 (504)
                      .++.++|.+.++++|+++|+...                     ++.+.+||+|+.++++++|+.|.+.|+++||+|+++
T Consensus        16 ~~l~~~l~~~~~~~~~~~ai~~~---------------------~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~   74 (559)
T PRK08315         16 QTIGQLLDRTAARYPDREALVYR---------------------DQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIW   74 (559)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEEc---------------------CCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            37999999999999999999642                     122569999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch-----hHHHHHhhc-------------C
Q psy6874         171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL-----PKFRNILKL-------------T  232 (504)
Q Consensus       171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~-------------~  232 (504)
                      ++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++++..     +.+.+....             .
T Consensus        75 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (559)
T PRK08315         75 APNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARL  154 (559)
T ss_pred             CCCChHHHHHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccC
Confidence            9999999999999999999999999999999999999999999999987532     122222111             1


Q ss_pred             CCceEEEEEcCCCCcccccccCCCceeeehhHHHhcccccCC---CCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHH
Q psy6874         233 PRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGS---RYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNM  309 (504)
Q Consensus       233 ~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l  309 (504)
                      +..+.++.++..          .......++++.........   ........++++++++|||||||.||+|.++|.++
T Consensus       155 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l  224 (559)
T PRK08315        155 PELRRVIFLGDE----------KHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNI  224 (559)
T ss_pred             CCceeEEeeccc----------CCcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHH
Confidence            334445544332          01123455555433211000   11122345688999999999999999999999999


Q ss_pred             HHHHHhhhhccCCCCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEecc
Q psy6874         310 ISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVP  388 (504)
Q Consensus       310 ~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP  388 (504)
                      ..++......+++.++|+++..+|++|.+++.. .+.++..|+++++....  .+....     +..++++++|++.++|
T Consensus       225 ~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~--~~~~~~-----~~~l~~~~~t~~~~~P  297 (559)
T PRK08315        225 LNNGYFIGEAMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEG--FDPLAT-----LAAVEEERCTALYGVP  297 (559)
T ss_pred             HHHHHHHHHhcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCC--CCHHHH-----HHHHHHcCCeEEecch
Confidence            998888888889999999999999999999874 67899999999854321  111111     3458899999999999


Q ss_pred             HHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHH
Q psy6874         389 LILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIK  468 (504)
Q Consensus       389 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~  468 (504)
                      .++..+......                                         .....+++|.+++||+++++++.+.++
T Consensus       298 ~~~~~~~~~~~~-----------------------------------------~~~~~~~lr~~~~~G~~~~~~~~~~~~  336 (559)
T PRK08315        298 TMFIAELDHPDF-----------------------------------------ARFDLSSLRTGIMAGSPCPIEVMKRVI  336 (559)
T ss_pred             HHHHHHHhCccc-----------------------------------------CCCCchhhheeEecCCCCCHHHHHHHH
Confidence            999877642110                                         001125899999999999999999998


Q ss_pred             HHhCC-ceeeeccccccccceeec
Q psy6874         469 VCLCE-KVIQGYGLTETTSCATVM  491 (504)
Q Consensus       469 ~~~~~-~v~~~YG~TEt~~~~~~~  491 (504)
                      ..++. ++++.||+||++..++..
T Consensus       337 ~~~~~~~l~~~YG~tE~~~~~~~~  360 (559)
T PRK08315        337 DKMHMSEVTIAYGMTETSPVSTQT  360 (559)
T ss_pred             HHcCCcceeEEEcccccccceeec
Confidence            88865 499999999998655544

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=4.1e-36  Score=323.66  Aligned_cols=319  Identities=18%  Similarity=0.203  Sum_probs=234.5

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..|+.++++++++++|+++|+.+.+.         ++.     ..+.++.+||+||.++++++|++|.+. +++||+|++
T Consensus        33 ~~~~~~~~~~~~~~~~~~~a~~~~~~---------~~~-----~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l   97 (612)
T PRK12476         33 GTTLISLIERNIANVGDTVAYRYLDH---------SHS-----AAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAI   97 (612)
T ss_pred             cCcHHHHHHHHHHhCCCceEEEEEcc---------CCC-----CCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEE
Confidence            45799999999999999999964320         000     013346899999999999999999886 999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEe-cCCCC--HHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCC--ceEEEEEcCC
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTI-YATLG--EEAIAHGINETEVNIVITTHDLLPKFRNILKLTPR--VSTLIYMEDQ  244 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i-~~~l~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--l~~ii~~~~~  244 (504)
                      +++|+++|+++++||+++|++++|+ ++.++  .+++.+++++++++++|++++..+.+.+.....+.  ...++.++..
T Consensus        98 ~~~n~~e~~~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  177 (612)
T PRK12476         98 LAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAI  177 (612)
T ss_pred             ECCCChhHHHHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccc
Confidence            9999999999999999999999999 56666  78999999999999999998776655544333332  1234443321


Q ss_pred             CCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccC-CC
Q psy6874         245 LTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVH-IE  323 (504)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~-~~  323 (504)
                      .                     .....   ........++++++|+|||||||.||||+++|+++.+++......+. +.
T Consensus       178 ~---------------------~~~~~---~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~  233 (612)
T PRK12476        178 P---------------------DSAGE---SFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLD  233 (612)
T ss_pred             c---------------------ccccc---cccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCC
Confidence            0                     00000   11112345689999999999999999999999999887776666666 78


Q ss_pred             CCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCcccc-ccchhhhccCCcccc--cccCCcEEEeccHHHHHHHHHHHH
Q psy6874         324 PNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTM-IDTSSKIKRGTKGDA--SVLHPTALTAVPLILDRIYKGVHE  400 (504)
Q Consensus       324 ~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~-~~~~~~i~~~~~~~i--~~~~~T~~~~vP~~~~~l~~~~~~  400 (504)
                      ++|++++++|++|.+++...+.+++.|+++++..+..+ .+....     ++.+  .++++|++..+|.++..+......
T Consensus       234 ~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~-----~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~  308 (612)
T PRK12476        234 RNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRW-----IKALSEGSRTGRVVTAAPNFAYEWAAQRGL  308 (612)
T ss_pred             CCceEEEeCCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHH-----HHHHhhhccCCeEEEeCCcHHHHHHHHhcC
Confidence            89999999999999999876666667777766654322 122111     2234  358899999999998887652100


Q ss_pred             HHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh---CC---c
Q psy6874         401 KVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL---CE---K  474 (504)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~---~~---~  474 (504)
                      ...                                     ......+++| +++||+++++++.+.++..|   |+   +
T Consensus       309 ~~~-------------------------------------~~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~  350 (612)
T PRK12476        309 PAE-------------------------------------GDDIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTA  350 (612)
T ss_pred             hhh-------------------------------------hcCcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccc
Confidence            000                                     0000115789 99999999999999999887   54   4


Q ss_pred             eeeeccccccccceee
Q psy6874         475 VIQGYGLTETTSCATV  490 (504)
Q Consensus       475 v~~~YG~TEt~~~~~~  490 (504)
                      ++++||+||+++.++.
T Consensus       351 ~~~~YG~TE~~~~~~~  366 (612)
T PRK12476        351 FKPSYGIAEATLFVAT  366 (612)
T ss_pred             cccccchhhhheeeec
Confidence            8999999998765544

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=1.1e-35  Score=317.75  Aligned_cols=324  Identities=19%  Similarity=0.227  Sum_probs=238.7

Q ss_pred             CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Q psy6874          91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIF  170 (504)
Q Consensus        91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~  170 (504)
                      .+++++|.+.+..+|+++|+.+                      +. ..+||+||.++++++|++|.+.|+++||+|+++
T Consensus        20 ~~~~~~~~~~~~~~p~~~a~~~----------------------~~-~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~   76 (567)
T PLN02479         20 LTPLWFLERAAVVHPTRKSVVH----------------------GS-VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVI   76 (567)
T ss_pred             cCHHHHHHHHHhhCCCceEEEE----------------------CC-ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            4688999999999999999953                      11 468999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCC-------CceEEEEEcC
Q psy6874         171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTP-------RVSTLIYMED  243 (504)
Q Consensus       171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~l~~ii~~~~  243 (504)
                      ++|+++|+++++||+++|++++|+++.++.+++.++++++++++++++++..+...++.....       ....++.++.
T Consensus        77 ~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (567)
T PLN02479         77 APNIPAMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGD  156 (567)
T ss_pred             CCCcHHHHHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecC
Confidence            999999999999999999999999999999999999999999999999876655444332211       1123333332


Q ss_pred             CCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCC
Q psy6874         244 QLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIE  323 (504)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~  323 (504)
                      ..................++++++.....  .........+++++++|||||||.||||++||.++..........+++.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~  234 (567)
T PLN02479        157 PTCDPKSLQYALGKGAIEYEKFLETGDPE--FAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMN  234 (567)
T ss_pred             CcCCccccccccccCcccHHHHHhccccc--cccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCC
Confidence            10000000000112344577766543211  1111122345678899999999999999999999877666555566788


Q ss_pred             CCcEEEEecChHHHHHHHHHH-HHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHH
Q psy6874         324 PNDVFLGYLPLAHVFELLSES-VCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKV  402 (504)
Q Consensus       324 ~~d~~l~~lPl~h~~~~~~~~-~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~  402 (504)
                      .+|++++.+|++|++++...+ ..++.|.++++.. ......        +..+++++||++.++|.++..+.+......
T Consensus       235 ~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~~~-~~~~~~--------~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~  305 (567)
T PLN02479        235 EGAVYLWTLPMFHCNGWCFTWTLAALCGTNICLRQ-VTAKAI--------YSAIANYGVTHFCAAPVVLNTIVNAPKSET  305 (567)
T ss_pred             CCCEEEEecchhhhhhHHHHHHHHhhcCceEeccC-CCHHHH--------HHHHHHcCCeEEEecHHHHHHHHhhhhhcc
Confidence            999999999999999977544 3455666655532 221111        346899999999999999998876321100


Q ss_pred             hccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccc
Q psy6874         403 SRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLT  482 (504)
Q Consensus       403 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~T  482 (504)
                                                              ....+++|.+++||+++++++.++++.. ++++++.||+|
T Consensus       306 ----------------------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~t  344 (567)
T PLN02479        306 ----------------------------------------ILPLPRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLS  344 (567)
T ss_pred             ----------------------------------------cccccceeEEEEcCCCCCHHHHHHHHhc-CCceecccccc
Confidence                                                    0012589999999999999999998865 89999999999


Q ss_pred             cccccee
Q psy6874         483 ETTSCAT  489 (504)
Q Consensus       483 Et~~~~~  489 (504)
                      |+++.++
T Consensus       345 E~~~~~~  351 (567)
T PLN02479        345 ETYGPST  351 (567)
T ss_pred             ccccccc
Confidence            9865443

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=3.9e-36  Score=320.64  Aligned_cols=312  Identities=22%  Similarity=0.284  Sum_probs=234.7

Q ss_pred             HHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEc
Q psy6874          93 MEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRS-LGQEPRHNVVIFA  171 (504)
Q Consensus        93 l~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gv~~gd~Vai~~  171 (504)
                      +..+|.+  +.+|+++|+.+.                     .....+||+|+.++++++|++|.+ .|+++||+|++++
T Consensus        43 ~~~l~~~--~~~~~~~a~~~~---------------------~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~   99 (560)
T PLN02574         43 VSFIFSH--HNHNGDTALIDS---------------------STGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLL   99 (560)
T ss_pred             HHHHhcC--cccCCCCEEEEC---------------------CCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEC
Confidence            4456655  578999998631                     111368999999999999999998 9999999999999


Q ss_pred             CCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccccc
Q psy6874         172 ETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT  251 (504)
Q Consensus       172 ~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~  251 (504)
                      +|+++|+++++||+++|++++|+++.++.+++.++++++++++++++.+..+.+...     .. .++.++... ..+  
T Consensus       100 ~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~-~~~--  170 (560)
T PLN02574        100 PNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL-----GV-PVIGVPENY-DFD--  170 (560)
T ss_pred             CCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc-----CC-cEEecCccc-ccc--
Confidence            999999999999999999999999999999999999999999999998765544321     11 122222110 000  


Q ss_pred             ccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhh----ccC-CCCCc
Q psy6874         252 NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD----AVH-IEPND  326 (504)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~----~~~-~~~~d  326 (504)
                        ........++++......   ..+.....++++++|+|||||||.||||+++|+++.+.+..+..    ... ...++
T Consensus       171 --~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~  245 (560)
T PLN02574        171 --SKRIEFPKFYELIKEDFD---FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDN  245 (560)
T ss_pred             --cCccCcccHHHHhhcCCc---ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCc
Confidence              001122345555443321   11222346789999999999999999999999999887765543    122 23578


Q ss_pred             EEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhcc
Q psy6874         327 VFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRA  405 (504)
Q Consensus       327 ~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~  405 (504)
                      +++..+|++|++++.. .+.++..|+++++.+.......        +..++++++|++.++|.++..+.+....     
T Consensus       246 ~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----  312 (560)
T PLN02574        246 VYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDM--------VKVIDRFKVTHFPVVPPILMALTKKAKG-----  312 (560)
T ss_pred             EEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHH--------HHHHHHcCCeEEecCCHHHHHHHhCccc-----
Confidence            9999999999999875 5577788999998765433222        4468899999999999999998763210     


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeecccccc
Q psy6874         406 SPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTET  484 (504)
Q Consensus       406 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt  484 (504)
                                                         ......+++|.+++||+++++++.++++..+ +++++++||+||+
T Consensus       313 -----------------------------------~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~  357 (560)
T PLN02574        313 -----------------------------------VCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTES  357 (560)
T ss_pred             -----------------------------------cccCccccceEEEEecccCCHHHHHHHHHHCCCCcEEeccccccc
Confidence                                               0001125899999999999999999998877 7899999999999


Q ss_pred             cccee
Q psy6874         485 TSCAT  489 (504)
Q Consensus       485 ~~~~~  489 (504)
                      ++.++
T Consensus       358 ~~~~~  362 (560)
T PLN02574        358 TAVGT  362 (560)
T ss_pred             Cceee
Confidence            76544

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-35  Score=312.46  Aligned_cols=306  Identities=17%  Similarity=0.190  Sum_probs=239.7

Q ss_pred             CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Q psy6874          91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIF  170 (504)
Q Consensus        91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~  170 (504)
                      .++.++|++.++++|+++|+.+.                       .+.+||.|+.++++++|.+|.+.|+++|++|+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~a~~~~-----------------------~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~   58 (497)
T PRK06145          2 FNLSASIAFHARRTPDRAALVYR-----------------------DQEISYAEFHQRILQAAGMLHARGIGQGDVVALL   58 (497)
T ss_pred             ccHHHHHHHHHHHCCCceEEEEC-----------------------CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            47889999999999999998632                       2579999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcccc
Q psy6874         171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDT  250 (504)
Q Consensus       171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~  250 (504)
                      ++|+++++++++||++.|++++|+++.++.+++.++++.+++++++++++...... .      ....+.++... .   
T Consensus        59 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~-~------~~~~~~~~~~~-~---  127 (497)
T PRK06145         59 MKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVA-L------ETPKIVIDAAA-Q---  127 (497)
T ss_pred             CCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhh-c------ccceEEecCcc-c---
Confidence            99999999999999999999999999999999999999999999999877543211 0      11222222210 0   


Q ss_pred             cccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEE
Q psy6874         251 TNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLG  330 (504)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~  330 (504)
                               ..+..+..... .  ........++++++++|||||||.||+|+++|.|+..........+.+..+|+++.
T Consensus       128 ---------~~~~~~~~~~~-~--~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~  195 (497)
T PRK06145        128 ---------ADSRRLAQGGL-E--IPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLV  195 (497)
T ss_pred             ---------chhHHHhccCC-C--CCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEE
Confidence                     00111111100 0  11122456789999999999999999999999999877666666678899999999


Q ss_pred             ecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHH
Q psy6874         331 YLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFK  409 (504)
Q Consensus       331 ~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~  409 (504)
                      .+|++|.+++.. .+.+++.|+++.+.+.....+.        ++.++++++|++.++|.++..+.+.....        
T Consensus       196 ~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~ll~~~~~~--------  259 (497)
T PRK06145        196 VGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAV--------LAAIERHRLTCAWMAPVMLSRVLTVPDRD--------  259 (497)
T ss_pred             ecCchhHhHHHHHHHHHHhccCEEEECCcCCHHHH--------HHHHHHhCCeEEEehHHHHHHHHcCCCcc--------
Confidence            999999998864 5678899999988765433222        33588999999999999998886531100        


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeeccccccccce
Q psy6874         410 RALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTSCA  488 (504)
Q Consensus       410 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~~~  488 (504)
                                                       ....+++|.+++||++++++++++++..| +++++++||+||+++..
T Consensus       260 ---------------------------------~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~  306 (497)
T PRK06145        260 ---------------------------------RFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGD  306 (497)
T ss_pred             ---------------------------------ccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcc
Confidence                                             00115799999999999999999998887 68899999999998766


Q ss_pred             eec
Q psy6874         489 TVM  491 (504)
Q Consensus       489 ~~~  491 (504)
                      +..
T Consensus       307 ~~~  309 (497)
T PRK06145        307 TLM  309 (497)
T ss_pred             eec
Confidence            554

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=9.4e-36  Score=342.74  Aligned_cols=329  Identities=19%  Similarity=0.208  Sum_probs=244.8

Q ss_pred             CCcHHHHHHHHHHhCCC-CcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEE
Q psy6874          90 VDTMEKVLRYVVTRFSD-QRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVV  168 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~-~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Va  168 (504)
                      ..++.+.+.+.++++|+ +.++.+                      ++.+.+||+|+.++++++|+.|++ |+++||+|+
T Consensus       630 ~~~~~~~l~~~~~~~~~~~~ai~~----------------------~~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~  686 (1140)
T PRK06814        630 DRTLFEALIEAAKIHGFKKLAVED----------------------PVNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVG  686 (1140)
T ss_pred             cCCHHHHHHHHHHHcCCCCeEeEC----------------------CCCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEE
Confidence            45677888888888864 455521                      123579999999999999999975 999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHH--HHHhhcCCCceEEEEEcCCCC
Q psy6874         169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKF--RNILKLTPRVSTLIYMEDQLT  246 (504)
Q Consensus       169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~--~~~~~~~~~l~~ii~~~~~~~  246 (504)
                      ++++|++|++++++||+++|++++|+|++++++++.++++++++++++++++..+..  .....+.+....++.+++...
T Consensus       687 i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  766 (1140)
T PRK06814        687 VMLPNANGAAVTFFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRA  766 (1140)
T ss_pred             EEcCCchHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhc
Confidence            999999999999999999999999999999999999999999999999987654321  122222233334555543200


Q ss_pred             cccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCc
Q psy6874         247 STDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPND  326 (504)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d  326 (504)
                      .           ...++++...........+.....++|+++++|||||||.||||+++|+|+.+++......++++++|
T Consensus       767 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d  835 (1140)
T PRK06814        767 Q-----------IGLADKIKGLLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPED  835 (1140)
T ss_pred             c-----------CChHHHHHHHhhccCCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcC
Confidence            0           01111111110000001111135679999999999999999999999999999988888888999999


Q ss_pred             EEEEecChHHHHHHH-HHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhcc
Q psy6874         327 VFLGYLPLAHVFELL-SESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRA  405 (504)
Q Consensus       327 ~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~  405 (504)
                      ++++.+|++|.+++. ..+.++..|+++++.+.......       ..+.++++++|++.++|+++..+.+..    .  
T Consensus       836 ~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~-------~~~~i~~~~~t~~~~~p~~l~~l~~~~----~--  902 (1140)
T PRK06814        836 KVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHYRI-------IPELIYDTNATILFGTDTFLNGYARYA----H--  902 (1140)
T ss_pred             EEEEecchHHHHHHHHHHHHHHHcCCEEEEecCcccHHH-------HHHHHHhcCCEEEEecHHHHHHHHhhc----c--
Confidence            999999999999985 57789999999988653211111       123478899999999999988775420    0  


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccc
Q psy6874         406 SPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETT  485 (504)
Q Consensus       406 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~  485 (504)
                                                           ....+++|.+++||+++++++.+.+++.++++++++||+||++
T Consensus       903 -------------------------------------~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~  945 (1140)
T PRK06814        903 -------------------------------------PYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETA  945 (1140)
T ss_pred             -------------------------------------cccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEecccccccc
Confidence                                                 0012589999999999999999999988999999999999998


Q ss_pred             cceeecccCCCCCccCCC
Q psy6874         486 SCATVMHLNDMGNINSNG  503 (504)
Q Consensus       486 ~~~~~~~~~d~~~~~s~G  503 (504)
                      ..++.....+ ...+++|
T Consensus       946 ~~~~~~~~~~-~~~~~vG  962 (1140)
T PRK06814        946 PVIALNTPMH-NKAGTVG  962 (1140)
T ss_pred             ceEEecCCCC-CCCCcCC
Confidence            7665543322 3344555

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=1.2e-35  Score=312.98  Aligned_cols=307  Identities=21%  Similarity=0.318  Sum_probs=242.2

Q ss_pred             CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Q psy6874          91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIF  170 (504)
Q Consensus        91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~  170 (504)
                      .++.+++.+.+ .+|++.|+..                      ++.+.+||.||.++++++|+.|++.|+++||+|+++
T Consensus         3 ~~l~~~~~~~~-~~~~~~a~~~----------------------~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~   59 (504)
T PRK07514          3 NNLFDALRAAF-ADRDAPFIET----------------------PDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQ   59 (504)
T ss_pred             ccHHHHHHHHh-hCCCCeEEEe----------------------CCCCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            46889999988 9999998852                      233679999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcccc
Q psy6874         171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDT  250 (504)
Q Consensus       171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~  250 (504)
                      ++|+++++++++||+++|++++|+++.++.+++.++++.++++++++++...+.+..+.... ..+.++.++...     
T Consensus        60 ~~~~~e~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----  133 (504)
T PRK07514         60 VEKSPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAA-GAPHVETLDADG-----  133 (504)
T ss_pred             CCCCHHHHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhcc-CCceEEEecCCC-----
Confidence            99999999999999999999999999999999999999999999999988766655543322 223344443320     


Q ss_pred             cccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEE
Q psy6874         251 TNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLG  330 (504)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~  330 (504)
                              ...+.+.......   ........++++++|+|||||||.||+|.++|.++...+......+++.++|++++
T Consensus       134 --------~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~  202 (504)
T PRK07514        134 --------TGSLLEAAAAAPD---DFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIH  202 (504)
T ss_pred             --------cccHHHhhhhcCc---ccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEE
Confidence                    0112222111111   12223456789999999999999999999999999999888777788899999999


Q ss_pred             ecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHH
Q psy6874         331 YLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFK  409 (504)
Q Consensus       331 ~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~  409 (504)
                      .+|++|+.++.. .+.++..|+++++.+.......        +..+  .++|++.++|.++.++.+...          
T Consensus       203 ~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~--------~~~i--~~~t~~~~~P~~~~~l~~~~~----------  262 (504)
T PRK07514        203 ALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAV--------LALM--PRATVMMGVPTFYTRLLQEPR----------  262 (504)
T ss_pred             ecchHHHHHHHHHHHHHHhcCcEEEECCCCCHHHH--------HHHH--HhheeeecHHHHHHHHHcCCC----------
Confidence            999999999874 6688999999998765433222        1123  479999999999988865200          


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccce
Q psy6874         410 RALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCA  488 (504)
Q Consensus       410 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~  488 (504)
                                             .        .....+++|.+++||+++++++.++++..+++++++.||+||++...
T Consensus       263 -----------------------~--------~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~  310 (504)
T PRK07514        263 -----------------------L--------TREAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNT  310 (504)
T ss_pred             -----------------------C--------CcccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccc
Confidence                                   0        00112689999999999999999999998999999999999987543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=7.8e-36  Score=344.17  Aligned_cols=325  Identities=24%  Similarity=0.337  Sum_probs=248.4

Q ss_pred             CCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeE
Q psy6874          88 DGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNV  167 (504)
Q Consensus        88 ~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V  167 (504)
                      +...++.+.+++.++++|+++|+.+.                      ..+.+||+|+.++++++|+.|.+ ++++||+|
T Consensus       612 ~~~~~l~~~~~~~a~~~p~~~a~~~~----------------------~~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V  668 (1146)
T PRK08633        612 EALPPLAEAWIDTAKRNWSRLAVADS----------------------TGGELSYGKALTGALALARLLKR-ELKDEENV  668 (1146)
T ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEcC----------------------CCCcCcHHHHHHHHHHHHHHHHH-hCCCCCeE
Confidence            45678999999999999999999521                      12469999999999999999987 58999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHh--hcCCCceEEEEEcCCC
Q psy6874         168 VIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNIL--KLTPRVSTLIYMEDQL  245 (504)
Q Consensus       168 ai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~l~~ii~~~~~~  245 (504)
                      +++++|++|++++++||+++|++++|+++..+++++.++++++++++++++++..+.+.+..  ...+....++..++..
T Consensus       669 ~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  748 (1146)
T PRK08633        669 GILLPPSVAGALANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLK  748 (1146)
T ss_pred             EEECCCchHHHHHHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhc
Confidence            99999999999999999999999999999999999999999999999999877655543210  0122333445443320


Q ss_pred             CcccccccCCCceeeehhHHHhcccccC---CCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCC
Q psy6874         246 TSTDTTNFKQGIEIVPFKQIVKRGSESG---SRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHI  322 (504)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~  322 (504)
                      ...        .....+.+.......+.   .........++|+++++|||||||.||||++||+++..++......+++
T Consensus       749 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~  820 (1146)
T PRK08633        749 AKI--------SKVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNL  820 (1146)
T ss_pred             ccc--------chhHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCC
Confidence            000        00011222111110000   0000134567999999999999999999999999999998888888889


Q ss_pred             CCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHH
Q psy6874         323 EPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEK  401 (504)
Q Consensus       323 ~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~  401 (504)
                      .++|++++.+|++|.+++.. .+.+++.|+++++.+..  .+....     ++.++++++|++.++|++++.+.+.... 
T Consensus       821 ~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~--~~~~~~-----~~~i~~~~~t~~~~~P~~~~~l~~~~~~-  892 (1146)
T PRK08633        821 RNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDP--TDALGI-----AKLVAKHRATILLGTPTFLRLYLRNKKL-  892 (1146)
T ss_pred             CCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCC--CCHHHH-----HHHHHHcCCeEEEecHHHHHHHHhcccc-
Confidence            99999999999999999985 77889999999886432  111111     3458899999999999999887652100 


Q ss_pred             HhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccc
Q psy6874         402 VSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGL  481 (504)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~  481 (504)
                                                              .+...+++|.+++||+++++++.+++++.+|++++++||+
T Consensus       893 ----------------------------------------~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~  932 (1146)
T PRK08633        893 ----------------------------------------HPLMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGA  932 (1146)
T ss_pred             ----------------------------------------CcccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeeccccc
Confidence                                                    0111268999999999999999999999899999999999


Q ss_pred             cccccceeec
Q psy6874         482 TETTSCATVM  491 (504)
Q Consensus       482 TEt~~~~~~~  491 (504)
                      ||+++.++..
T Consensus       933 tE~~~~~~~~  942 (1146)
T PRK08633        933 TETSPVASVN  942 (1146)
T ss_pred             ccCcceEEEe
Confidence            9998766654

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=3.4e-36  Score=352.46  Aligned_cols=332  Identities=14%  Similarity=0.116  Sum_probs=244.3

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..++.++|++.++.+|+++|+.+..-.     ..         ..+..+.+||+||.++++++|++|.+.|+++|++|+|
T Consensus       235 ~~~l~~~~~~~a~~~pd~~A~~~~~~~-----~~---------~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i  300 (1389)
T TIGR03443       235 RGAIHDIFADNAEKHPDRTCVVETPSF-----LD---------PSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMI  300 (1389)
T ss_pred             cCcHHHHHHHHHHhCCCCeEEEecccc-----cc---------ccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence            357999999999999999999643200     00         0123367999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCc---hhHHHHHhhcC----CCceEEEEEc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDL---LPKFRNILKLT----PRVSTLIYME  242 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~---~~~~~~~~~~~----~~l~~ii~~~  242 (504)
                      +++|+++|+++++||+++|++++|+++.++++++.++++++++++++++.+.   ...+.......    ..+..+...+
T Consensus       301 ~~~~~~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (1389)
T TIGR03443       301 YAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQD  380 (1389)
T ss_pred             EecCCHHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEecc
Confidence            9999999999999999999999999999999999999999999999987642   11121111100    1111111111


Q ss_pred             CCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCC
Q psy6874         243 DQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHI  322 (504)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~  322 (504)
                      ..  ...     .+.......+..................++++++|+|||||||.||||+++|+++.+.+.++...+++
T Consensus       381 ~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~  453 (1389)
T TIGR03443       381 DG--SLV-----GGSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGL  453 (1389)
T ss_pred             cc--ccc-----ccccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCC
Confidence            10  000     00000000011000000000111223467899999999999999999999999999999888888899


Q ss_pred             CCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHH
Q psy6874         323 EPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKV  402 (504)
Q Consensus       323 ~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~  402 (504)
                      .++|+++.+.|++|..++..++.+|+.|+++++.+.....+....     .+.++++++|++.++|++++.+.....   
T Consensus       454 ~~~d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l-----~~~i~~~~vt~~~~~Ps~~~~l~~~~~---  525 (1389)
T TIGR03443       454 SENDKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRL-----AEWMAKYGATVTHLTPAMGQLLSAQAT---  525 (1389)
T ss_pred             CCCCEEEEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHH-----HHHHHHhCCeEEEeCHHHHHHHHhccc---
Confidence            999999999999999988888999999999999765443332222     335889999999999999988754210   


Q ss_pred             hccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeeccc
Q psy6874         403 SRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGL  481 (504)
Q Consensus       403 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~  481 (504)
                      .                                         ...++|.+++||++++++..+.++... +++++|+||+
T Consensus       526 ~-----------------------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~  564 (1389)
T TIGR03443       526 T-----------------------------------------PIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGT  564 (1389)
T ss_pred             c-----------------------------------------cCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccC
Confidence            0                                         015899999999999999998887654 7899999999


Q ss_pred             cccccceeec
Q psy6874         482 TETTSCATVM  491 (504)
Q Consensus       482 TEt~~~~~~~  491 (504)
                      ||++..++..
T Consensus       565 TE~~~~~~~~  574 (1389)
T TIGR03443       565 TETQRAVSYF  574 (1389)
T ss_pred             CccceeEEEE
Confidence            9998766654

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.1e-35  Score=313.70  Aligned_cols=340  Identities=17%  Similarity=0.226  Sum_probs=247.9

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..++.++|.+.++++|+++|+.+.                       .+.+||.||.++++++|+.|.+.|+++||+|++
T Consensus        22 ~~~i~~~l~~~a~~~p~~~a~~~~-----------------------~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i   78 (557)
T PRK07059         22 YPSLADLLEESFRQYADRPAFICM-----------------------GKAITYGELDELSRALAAWLQSRGLAKGARVAI   78 (557)
T ss_pred             CCCHHHHHHHHHHHcCCCceEEEc-----------------------CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence            457999999999999999998632                       157999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCC-Ccc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQL-TST  248 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~-~~~  248 (504)
                      +++|+++++++++||+++|++++|+++.++.+++.+++++++++++++++.....+.++... ...+.++...... ...
T Consensus        79 ~~~n~~~~~~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  157 (557)
T PRK07059         79 MMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAK-TAVKHVVVASMGDLLGF  157 (557)
T ss_pred             ECCCCHHHHHHHHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcc-cCCceeEEecccccccc
Confidence            99999999999999999999999999999999999999999999999988765555444332 2233333322110 000


Q ss_pred             -c------------ccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHh
Q psy6874         249 -D------------TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKA  315 (504)
Q Consensus       249 -~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~  315 (504)
                       .            ............++++.......  ........++++++|+|||||||.||||+++|.+++.++..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~  235 (557)
T PRK07059        158 KGHIVNFVVRRVKKMVPAWSLPGHVRFNDALAEGARQ--TFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQ  235 (557)
T ss_pred             cccccccccccccccccccCCCCcccHHHHhhccCCC--CCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHH
Confidence             0            00000011224455554433221  22233456789999999999999999999999999876654


Q ss_pred             hhhcc----CC---CCCcEEEEecChHHHHHHH-HHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEec
Q psy6874         316 FSDAV----HI---EPNDVFLGYLPLAHVFELL-SESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAV  387 (504)
Q Consensus       316 ~~~~~----~~---~~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~v  387 (504)
                      ....+    ..   ..++.+++.+|++|.+++. ..+.++..|++.++.+..  .+...     .++.++++++|.+.++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~-----~~~~i~~~~vt~~~~~  308 (557)
T PRK07059        236 MEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNP--RDIPG-----FIKELKKYQVHIFPAV  308 (557)
T ss_pred             HhhhhcccccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCC--cCHHH-----HHHHHHHhCCeeeecC
Confidence            33222    11   1245788999999999876 466788888887765432  11111     1345889999999999


Q ss_pred             cHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHH
Q psy6874         388 PLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELI  467 (504)
Q Consensus       388 P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~  467 (504)
                      |.++..+.+...                                 ..        ....+++|.++.||+++++.+.+.+
T Consensus       309 p~~~~~l~~~~~---------------------------------~~--------~~~~~~l~~~~~gg~~~~~~~~~~~  347 (557)
T PRK07059        309 NTLYNALLNNPD---------------------------------FD--------KLDFSKLIVANGGGMAVQRPVAERW  347 (557)
T ss_pred             HHHHHHHHcCcC---------------------------------cC--------cCCchhheEEEeccccCCHHHHHHH
Confidence            999998865310                                 00        0011579999999999999999999


Q ss_pred             HHHhCCceeeeccccccccceeecccCCCCCccCCC
Q psy6874         468 KVCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNG  503 (504)
Q Consensus       468 ~~~~~~~v~~~YG~TEt~~~~~~~~~~d~~~~~s~G  503 (504)
                      +..+++++++.||+||++..++..........+++|
T Consensus       348 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG  383 (557)
T PRK07059        348 LEMTGCPITEGYGLSETSPVATCNPVDATEFSGTIG  383 (557)
T ss_pred             HHHhCCCeeeccccccccchhhcCCCCCCCcCCccc
Confidence            988999999999999998776655433333344555

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=4.3e-36  Score=374.75  Aligned_cols=303  Identities=20%  Similarity=0.261  Sum_probs=247.0

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..++.++|++.++++||++|+.+.                      + +.+||+||+++++++|+.|.+.|+++|++|+|
T Consensus      3094 ~~~~~~l~~~~a~~~p~~~Av~~~----------------------~-~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l 3150 (3956)
T PRK12467       3094 ERLVHQLIEAQVARTPEAPALVFG----------------------D-QQLSYAELNRRANRLAHRLIAIGVGPDVLVGV 3150 (3956)
T ss_pred             cccHHHHHHHHHHhCCCcceEeeC----------------------C-cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEE
Confidence            358999999999999999999642                      2 57999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD  249 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~  249 (504)
                      +++|+++++++++||+++|++++|+++.++.+++.++++++++++++++....+.+..    ... ..++.++..     
T Consensus      3151 ~~~~s~~~vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~----~~~-~~~~~~~~~----- 3220 (3956)
T PRK12467       3151 AVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPA----PAG-DTALTLDRL----- 3220 (3956)
T ss_pred             EeCCCHHHHHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhccc----ccC-Cceeeecch-----
Confidence            9999999999999999999999999999999999999999999999998765443211    011 112222211     


Q ss_pred             ccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEE
Q psy6874         250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFL  329 (504)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l  329 (504)
                                      .......  ..+.....++++++|+|||||||.||||+++|+++.+.+.+....++++++|+++
T Consensus      3221 ----------------~~~~~~~--~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l 3282 (3956)
T PRK12467       3221 ----------------DLNGYSE--NNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVL 3282 (3956)
T ss_pred             ----------------hhcccCC--CCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEE
Confidence                            0000000  2222345679999999999999999999999999999999998889999999999


Q ss_pred             EecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHH
Q psy6874         330 GYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFK  409 (504)
Q Consensus       330 ~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~  409 (504)
                      .+.|++|..+...++.+|+.|+++++.+ ....+....     ++.++++++|++.++|+++..+.+...          
T Consensus      3283 ~~~~~~fd~~~~~~~~~L~~G~~l~i~~-~~~~~~~~l-----~~~i~~~~vt~~~~~Ps~l~~l~~~~~---------- 3346 (3956)
T PRK12467       3283 LFMSFSFDGAQERFLWTLICGGCLVVRD-NDLWDPEEL-----WQAIHAHRISIACFPPAYLQQFAEDAG---------- 3346 (3956)
T ss_pred             EecCccHhHHHHHHHHHHhCCCEEEECC-cccCCHHHH-----HHHHHHcCCEEEEcCHHHHHHHHhccc----------
Confidence            9999999999888999999999999987 333333222     345889999999999999988865210          


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeeccccccccce
Q psy6874         410 RALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTSCA  488 (504)
Q Consensus       410 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~~~  488 (504)
                                                       ....++||.+++||+++++++.+.++..+ +++++|+||+||+++.+
T Consensus      3347 ---------------------------------~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 3393 (3956)
T PRK12467       3347 ---------------------------------GADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTV 3393 (3956)
T ss_pred             ---------------------------------ccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeee
Confidence                                             00125899999999999999999998766 67899999999998776


Q ss_pred             eecc
Q psy6874         489 TVMH  492 (504)
Q Consensus       489 ~~~~  492 (504)
                      +...
T Consensus      3394 ~~~~ 3397 (3956)
T PRK12467       3394 TLWK 3397 (3956)
T ss_pred             EEEe
Confidence            6543

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.7e-35  Score=313.10  Aligned_cols=324  Identities=16%  Similarity=0.173  Sum_probs=243.8

Q ss_pred             CCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeE
Q psy6874          88 DGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNV  167 (504)
Q Consensus        88 ~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V  167 (504)
                      ++..++.++|++.++.+|+++|+..                       +.+.+||+||.++++++|+.|.+.|+++||+|
T Consensus         7 ~~~~~l~~~l~~~a~~~p~~~a~~~-----------------------~~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V   63 (540)
T PRK06164          7 PRADTLASLLDAHARARPDAVALID-----------------------EDRPLSRAELRALVDRLAAWLAAQGVRRGDRV   63 (540)
T ss_pred             cCCCCHHHHHHHHHHhCCCCeEEec-----------------------CCCcccHHHHHHHHHHHHHHHHHhCCCCCCEE
Confidence            3456899999999999999999952                       22579999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch-----hHHHHHhh-cCCCceEEEEE
Q psy6874         168 VIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL-----PKFRNILK-LTPRVSTLIYM  241 (504)
Q Consensus       168 ai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~-~~~~l~~ii~~  241 (504)
                      +++++|+++|+++++||+++|++++|+++..+.+++.++++++++++++++++..     +.+..... ..+.++.++.+
T Consensus        64 ~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (540)
T PRK06164         64 AVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVV  143 (540)
T ss_pred             EEEcCCcHHHHHHHHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEe
Confidence            9999999999999999999999999999999999999999999999999987642     11222111 12345555555


Q ss_pred             cCCCCcccccccCCCceeeehhHHHhcccccCC-CCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhcc
Q psy6874         242 EDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGS-RYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV  320 (504)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~  320 (504)
                      +...  ...   +.. ....+.++......... ........++++++++|||||||.||||+++|.++.+.+......+
T Consensus       144 ~~~~--~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~  217 (540)
T PRK06164        144 DDAA--DAT---PAP-APGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY  217 (540)
T ss_pred             ccCc--ccC---CCC-CcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc
Confidence            4210  000   000 00011111111100000 0001223468999999999999999999999999999998888888


Q ss_pred             CCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHH
Q psy6874         321 HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHE  400 (504)
Q Consensus       321 ~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~  400 (504)
                      ++.++|++++++|++|.+++...+.++..|+++++.+.......        +..++++++|+++++|.++.++.+... 
T Consensus       218 ~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~--------~~~l~~~~~t~~~~~p~~l~~l~~~~~-  288 (540)
T PRK06164        218 GYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVCEPVFDAART--------ARALRRHRVTHTFGNDEMLRRILDTAG-  288 (540)
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHHHHhcCceEEecCCCCHHHH--------HHHHHHhCCeeecCCHHHHHHHHHhhc-
Confidence            89999999999999999999888899999999998765433222        345889999999999999999876310 


Q ss_pred             HHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEcc-CCCCHHHHHHHHHHhCCceeeec
Q psy6874         401 KVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGG-APLSPDTHELIKVCLCEKVIQGY  479 (504)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG-~~l~~~~~~~~~~~~~~~v~~~Y  479 (504)
                        .                                       ....+++|.+.++| ++.+.++.+++... ++++++.|
T Consensus       289 --~---------------------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y  326 (540)
T PRK06164        289 --E---------------------------------------RADFPSARLFGFASFAPALGELAALARAR-GVPLTGLY  326 (540)
T ss_pred             --c---------------------------------------cCCCcceeeeeeccCCcchHHHHHHHhhc-CCceecce
Confidence              0                                       00115788876665 56777777777765 89999999


Q ss_pred             cccccccceeec
Q psy6874         480 GLTETTSCATVM  491 (504)
Q Consensus       480 G~TEt~~~~~~~  491 (504)
                      |+||+++..+..
T Consensus       327 G~tE~~~~~~~~  338 (540)
T PRK06164        327 GSSEVQALVALQ  338 (540)
T ss_pred             eeccccceeecc
Confidence            999998765544

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.1e-35  Score=313.65  Aligned_cols=301  Identities=19%  Similarity=0.223  Sum_probs=231.5

Q ss_pred             CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCC-CCCCeEEE
Q psy6874          91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQ-EPRHNVVI  169 (504)
Q Consensus        91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv-~~gd~Vai  169 (504)
                      .|+.+++++.+  .|+++|+.+.                       ...+||.|+.++++++|+.|.++|+ .+||+|++
T Consensus         3 ~~~~~~l~~~~--~p~~~Al~~~-----------------------~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i   57 (540)
T PRK13388          3 DTIAQLLRDRA--GDDTIAVRYG-----------------------DRTWTWREVLAEAAARAAALIALADPDRPLHVGV   57 (540)
T ss_pred             hhHHHHHHhhc--cCCceEEEEC-----------------------CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            46778887754  7999998531                       1579999999999999999999999 89999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD  249 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~  249 (504)
                      +++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+.++.  .+..+. +.++..     
T Consensus        58 ~~~n~~~~v~~~lA~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~~-i~~~~~-----  129 (540)
T PRK13388         58 LLGNTPEMLFWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD--LPGVRV-LDVDTP-----  129 (540)
T ss_pred             ECCCCcHHHHHHHHHHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc--ccCceE-EEccch-----
Confidence            999999999999999999999999999999999999999999999999987655544321  233332 222211     


Q ss_pred             ccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEE
Q psy6874         250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFL  329 (504)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l  329 (504)
                                 .+.+++.....   ..+.....++++++++|||||||.||||+++|.++...+......+++.++|+++
T Consensus       130 -----------~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l  195 (540)
T PRK13388        130 -----------AYAELVAAAGA---LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCY  195 (540)
T ss_pred             -----------hhhhhhccccC---cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEE
Confidence                       12222221111   1122235679999999999999999999999999998888877888999999999


Q ss_pred             EecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChH
Q psy6874         330 GYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPF  408 (504)
Q Consensus       330 ~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~  408 (504)
                      ..+|++|.+++.. .+.++..|+++++.+.......        +..++++++|++..+|..+..+.+...     .+. 
T Consensus       196 ~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~--------~~~i~~~~vt~~~~~p~~l~~l~~~~~-----~~~-  261 (540)
T PRK13388        196 VSMPLFHSNAVMAGWAPAVASGAAVALPAKFSASGF--------LDDVRRYGATYFNYVGKPLAYILATPE-----RPD-  261 (540)
T ss_pred             EeeCchhhcchHHHHHHHHHcCcEEEECCCCCHHHH--------HHHHHHhCCeEEEehHHHHHHHHhCCC-----Ccc-
Confidence            9999999998875 4467889999988654322221        345889999999999999887764210     000 


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccce
Q psy6874         409 KRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCA  488 (504)
Q Consensus       409 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~  488 (504)
                                                         ....++|.+ + |++++++....+...+++++++.||+||++..+
T Consensus       262 -----------------------------------~~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~  304 (540)
T PRK13388        262 -----------------------------------DADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIV  304 (540)
T ss_pred             -----------------------------------ccccceEEE-E-CCCCCHHHHHHHHHHhCCceeccccccccccee
Confidence                                               001357744 3 667788888888888899999999999997655


Q ss_pred             e
Q psy6874         489 T  489 (504)
Q Consensus       489 ~  489 (504)
                      +
T Consensus       305 ~  305 (540)
T PRK13388        305 V  305 (540)
T ss_pred             e
Confidence            4

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.7e-35  Score=310.03  Aligned_cols=303  Identities=19%  Similarity=0.239  Sum_probs=231.8

Q ss_pred             CCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCeE
Q psy6874          89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSL-GQEPRHNV  167 (504)
Q Consensus        89 ~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gv~~gd~V  167 (504)
                      ...++.+++++.+.  ++++++..                      ++ +++||.|+.++++++|++|+++ |++++++|
T Consensus         3 ~~~~~~~~l~~~a~--~~~~a~~~----------------------~~-~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V   57 (529)
T PRK07867          3 SAPTVAELLLPLAE--DDDRGLYF----------------------ED-SFTSWREHIRGSAARAAALRARLDPTRPPHV   57 (529)
T ss_pred             ccccHHHHHHHhcc--cCCceEEE----------------------CC-cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEE
Confidence            34578888887774  78888753                      11 5799999999999999999996 89999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCc
Q psy6874         168 VIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTS  247 (504)
Q Consensus       168 ai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~  247 (504)
                      +++++|+++|+++++||+++|++++|+++.++.+++.++++.++++++|++++..+.+..+.   +.+. ++..+..   
T Consensus        58 ~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~~~~-~~~~~~~---  130 (529)
T PRK07867         58 GVLLDNTPEFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD---PGVR-VINVDSP---  130 (529)
T ss_pred             EEECCCCHHHHHHHHHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc---cCce-EEEeccc---
Confidence            99999999999999999999999999999999999999999999999999987666544432   2222 2222111   


Q ss_pred             ccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcE
Q psy6874         248 TDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDV  327 (504)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~  327 (504)
                                   .+++++......  ........++++++|+|||||||.||||+++|.++..+.......+++.++|+
T Consensus       131 -------------~~~~~l~~~~~~--~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~  195 (529)
T PRK07867        131 -------------AWADELAAHRDA--EPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDV  195 (529)
T ss_pred             -------------cHHHHhcccCCC--CCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccE
Confidence                         133333221111  12223456789999999999999999999999999988888878888899999


Q ss_pred             EEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccC
Q psy6874         328 FLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRAS  406 (504)
Q Consensus       328 ~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~  406 (504)
                      ++..+|++|.+++.. .+.++..|+++++.+.......        +..++++++|++.++|..+..+......     .
T Consensus       196 ~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~--------~~~i~~~~vt~~~~~p~~~~~ll~~~~~-----~  262 (529)
T PRK07867        196 CYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASGF--------LPDVRRYGATYANYVGKPLSYVLATPER-----P  262 (529)
T ss_pred             EEEecchhHHHHHHHHHHHHHhcCceEEecCCCCHHHH--------HHHHHHhCCeEEeccHHHHHHHHhCCCc-----c
Confidence            999999999999875 5578889999988654322221        3357899999999999998877542100     0


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccccccc
Q psy6874         407 PFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTS  486 (504)
Q Consensus       407 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~  486 (504)
                                                          ....+++|. ++||+++++.. ..++..+|+++++.||+||+++
T Consensus       263 ------------------------------------~~~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~  304 (529)
T PRK07867        263 ------------------------------------DDADNPLRI-VYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGV  304 (529)
T ss_pred             ------------------------------------cccccceEE-EecCCCChHHH-HHHHHHhCCcEEEeeccccccc
Confidence                                                000147885 45888888765 5566667999999999999875


Q ss_pred             cee
Q psy6874         487 CAT  489 (504)
Q Consensus       487 ~~~  489 (504)
                      ..+
T Consensus       305 ~~~  307 (529)
T PRK07867        305 AIT  307 (529)
T ss_pred             ccc
Confidence            544

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.9e-35  Score=306.99  Aligned_cols=323  Identities=16%  Similarity=0.159  Sum_probs=242.5

Q ss_pred             HHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHH
Q psy6874          98 RYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEW  177 (504)
Q Consensus        98 ~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~  177 (504)
                      ...++++|+++|+.+.                     .+.+.+||.|+.++++++++.|.+.|+++|++|+++++|++++
T Consensus         4 ~~~a~~~p~~~a~~~~---------------------~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~   62 (511)
T PRK13391          4 GIHAQTTPDKPAVIMA---------------------STGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRY   62 (511)
T ss_pred             hhhHhhCCCceEEEec---------------------CCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence            4567889999998531                     1225699999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcccccccCCCc
Q psy6874         178 MIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGI  257 (504)
Q Consensus       178 ~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~  257 (504)
                      +++++||++.|++++++++.++.+++.+++++++++.++++.+..+.+.++....+.....+..+...         ...
T Consensus        63 ~~~~~a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~  133 (511)
T PRK13391         63 LEVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDG---------ELE  133 (511)
T ss_pred             HHHHHHHHHhccEEeccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCC---------CCc
Confidence            99999999999999999999999999999999999999999887666666655556555555554320         001


Q ss_pred             eeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEe--cHHHHHHH---HHhhhhccCCCCCcEEEEec
Q psy6874         258 EIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVL--THDNMIST---LKAFSDAVHIEPNDVFLGYL  332 (504)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~--th~~l~~~---~~~~~~~~~~~~~d~~l~~l  332 (504)
                      ....+++......      .......++.++++|||||||.||||++  +|.++...   .......+.+.+++++++.+
T Consensus       134 ~~~~~~~~~~~~~------~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  207 (511)
T PRK13391        134 GFVGYAEAVAGLP------ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPA  207 (511)
T ss_pred             ccccHHHHhcCCC------CCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcC
Confidence            1223443332111      1111234567999999999999999995  46665432   22333455778899999999


Q ss_pred             ChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHH
Q psy6874         333 PLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRAL  412 (504)
Q Consensus       333 Pl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~  412 (504)
                      |++|.+++...+.++..|+++++.+.....+.        ++.++++++|++.++|.++..+.+......          
T Consensus       208 p~~h~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~----------  269 (511)
T PRK13391        208 PLYHSAPQRAVMLVIRLGGTVIVMEHFDAEQY--------LALIEEYGVTHTQLVPTMFSRMLKLPEEVR----------  269 (511)
T ss_pred             CHHHHHHHHHHHHHHHcCceEEECCCCCHHHH--------HHHHHHhCCeEEEehHHHHHHHHhCchhhc----------
Confidence            99999998888889999999998764322221        335889999999999999988765211100          


Q ss_pred             HHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccceeecc
Q psy6874         413 FAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMH  492 (504)
Q Consensus       413 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~~~~  492 (504)
                                                   .....+++|.+++||+++++++.++++..+|.+++++||+||+++......
T Consensus       270 -----------------------------~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~  320 (511)
T PRK13391        270 -----------------------------DKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDS  320 (511)
T ss_pred             -----------------------------ccCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecC
Confidence                                         001125899999999999999999999989999999999999987655433


Q ss_pred             cCCCCCccCCC
Q psy6874         493 LNDMGNINSNG  503 (504)
Q Consensus       493 ~~d~~~~~s~G  503 (504)
                      ......++++|
T Consensus       321 ~~~~~~~~~vG  331 (511)
T PRK13391        321 EEWLAHPGTVG  331 (511)
T ss_pred             ccccccCCCcC
Confidence            32233445555

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.4e-35  Score=370.23  Aligned_cols=307  Identities=20%  Similarity=0.277  Sum_probs=248.5

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..++.++|++.++++||++|+.+.                      + +.+||+||.++++++|+.|.+.|+++|++|+|
T Consensus       511 ~~~~~~~~~~~a~~~pd~~Al~~~----------------------~-~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i  567 (3956)
T PRK12467        511 PDCVHQLIEAQARQHPERPALVFG----------------------E-QVLSYAELNRQANRLAHVLIAAGVGPDVLVGI  567 (3956)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEeC----------------------C-ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            357999999999999999999632                      1 57999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD  249 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~  249 (504)
                      +++|+++++++++||+++|++++|+++.++.+++.++++++++++++++.+....+    ....... ++.++..     
T Consensus       568 ~~~~s~~~vv~~lail~aG~~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~----~~~~~~~-~~~~~~~-----  637 (3956)
T PRK12467        568 AVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQL----PVPAGLR-SLCLDEP-----  637 (3956)
T ss_pred             EeCCCHHHHHHHHHHHHhCcEEeccCCCChHHHHHHHHHhcCCCEEEechhhhhhc----ccccCcc-EEEeccc-----
Confidence            99999999999999999999999999999999999999999999999987543221    1111111 1222211     


Q ss_pred             ccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEE
Q psy6874         250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFL  329 (504)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l  329 (504)
                                   .+.......   ..+.....++++++|+|||||||.||||+++|+++.+.+......+++.++|+++
T Consensus       638 -------------~~~~~~~~~---~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l  701 (3956)
T PRK12467        638 -------------ADLLCGYSG---HNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSML  701 (3956)
T ss_pred             -------------cccccccCC---CCCCCCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhcCCCCCCEEE
Confidence                         000000000   1222345679999999999999999999999999999999988889999999999


Q ss_pred             EecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHH
Q psy6874         330 GYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFK  409 (504)
Q Consensus       330 ~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~  409 (504)
                      .+.|++|..++..++.+|+.|+++++.++....+....     .+.++++++|++.++|+++..+.+.....        
T Consensus       702 ~~~~~~fd~~~~~~~~~L~~G~~lv~~~~~~~~~~~~l-----~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--------  768 (3956)
T PRK12467        702 MVSTFAFDLGVTELFGALASGATLHLLPPDCARDAEAF-----AALMADQGVTVLKIVPSHLQALLQASRVA--------  768 (3956)
T ss_pred             EecCccHhHHHHHHHHHHhCCCEEEEcCccccCCHHHH-----HHHHHHcCCeEEEcCHHHHHHHHhhhccc--------
Confidence            99999999999989999999999999876544443222     33588999999999999999887631100        


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeeccccccccce
Q psy6874         410 RALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTSCA  488 (504)
Q Consensus       410 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~~~  488 (504)
                                                         ...++|.+++||+++++++.+.++..+ +++++|+||+||+++.+
T Consensus       769 -----------------------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~  813 (3956)
T PRK12467        769 -----------------------------------LPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGV  813 (3956)
T ss_pred             -----------------------------------cCCcccEEEEEeecCCHHHHHHHHHhCCCCEEEeCcCCChhhhhe
Confidence                                               014689999999999999999998866 78999999999998777


Q ss_pred             eeccc
Q psy6874         489 TVMHL  493 (504)
Q Consensus       489 ~~~~~  493 (504)
                      +....
T Consensus       814 ~~~~~  818 (3956)
T PRK12467        814 STYEL  818 (3956)
T ss_pred             eeEec
Confidence            66543

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=4.1e-35  Score=308.86  Aligned_cols=300  Identities=16%  Similarity=0.203  Sum_probs=238.0

Q ss_pred             cHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEc
Q psy6874          92 TMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFA  171 (504)
Q Consensus        92 tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~  171 (504)
                      ++.+.+++.++.+|+++|+...                       ...+||+||.++++++|+.|.+.|+++|++|++++
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~~-----------------------~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~   57 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRYQ-----------------------GQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYG   57 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEcC-----------------------CcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence            4678899999999999998532                       15799999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccccc
Q psy6874         172 ETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT  251 (504)
Q Consensus       172 ~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~  251 (504)
                      +|+.+|+++++||++.|++++|+++.++.+++.++++.++++.++++.+......       ... ++.++.        
T Consensus        58 ~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-------~~~-~~~~~~--------  121 (502)
T TIGR01734        58 HMEPHMLVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAV-------GTQ-IITLSA--------  121 (502)
T ss_pred             CCCHHHHHHHHHHHHhCCEEeCCCCcChHHHHHHHHHhcCCCEEEeccccccccc-------CCc-eEEchH--------
Confidence            9999999999999999999999999999999999999999999999876432211       111 111111        


Q ss_pred             ccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEEe
Q psy6874         252 NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGY  331 (504)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~  331 (504)
                                ..++......   ........++++++++|||||||.||+|+++|.++...+......+.+..+|+++..
T Consensus       122 ----------~~~~~~~~~~---~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~  188 (502)
T TIGR01734       122 ----------LEQAETSGGP---VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQ  188 (502)
T ss_pred             ----------hhhhhhhcCC---ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEee
Confidence                      1111111110   111223467899999999999999999999999999998888888888999999999


Q ss_pred             cChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHH
Q psy6874         332 LPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRA  411 (504)
Q Consensus       332 lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~  411 (504)
                      +|++|..++...+.++..|+++++.+.....+....     +..+.++++|.+.++|.++..+......           
T Consensus       189 ~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~p~~~~~~l~~~~~-----------  252 (502)
T TIGR01734       189 APFSFDLSVMDLYPCLASGGTLHCLDKDITNNFKLL-----FEELPKTGLNVWVSTPSFVDMCLLDPNF-----------  252 (502)
T ss_pred             cCceechhHHHHHHHHHCCCEEEEcCHHHhcCHHHH-----HHHHHHcCCeEEEEChhHHHHHHhcccc-----------
Confidence            999999999888899999999998765433332222     3457899999999999998776542100           


Q ss_pred             HHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeecccccccccee
Q psy6874         412 LFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTSCAT  489 (504)
Q Consensus       412 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~~~~  489 (504)
                                                    .....+++|.+++||+++++++.+.+++.+ +++++++||+||+++..+
T Consensus       253 ------------------------------~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~  301 (502)
T TIGR01734       253 ------------------------------NQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVT  301 (502)
T ss_pred             ------------------------------ccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEE
Confidence                                          000125899999999999999999998877 889999999999875444

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=1.3e-34  Score=309.12  Aligned_cols=328  Identities=20%  Similarity=0.299  Sum_probs=242.4

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHH-hCCCCCCCeEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLR-SLGQEPRHNVV  168 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~Gv~~gd~Va  168 (504)
                      ..++.++|.++++.+|+++|+...                       .+.+||+|+.++++++|+.|. +.|+++||+|+
T Consensus        24 ~~~~~~~l~~~~~~~~~~~a~~~~-----------------------~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~   80 (560)
T PRK08751         24 FRTVAEVFATSVAKFADRPAYHSF-----------------------GKTITYREADQLVEQFAAYLLGELQLKKGDRVA   80 (560)
T ss_pred             CCcHHHHHHHHHHhCCCCceEEEC-----------------------CceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence            346889999999999999998631                       157999999999999999997 68999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCC--CC
Q psy6874         169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQ--LT  246 (504)
Q Consensus       169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~--~~  246 (504)
                      ++++|+++++++++||+++|++++|+++.++.+++.+++++++++++++++.....+.++....+ .+.++..+..  ..
T Consensus        81 i~~~~~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  159 (560)
T PRK08751         81 LMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTP-VKQVITTGLGDMLG  159 (560)
T ss_pred             EECCCCHHHHHHHHHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCC-ccEEEEechhhhcc
Confidence            99999999999999999999999999999999999999999999999999887666655544433 2333332210  00


Q ss_pred             cc-----------cccccCC--CceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHH
Q psy6874         247 ST-----------DTTNFKQ--GIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTL  313 (504)
Q Consensus       247 ~~-----------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~  313 (504)
                      ..           .+...+.  ......+++........  ..+.....++++++++|||||||.||||.++|.++...+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~  237 (560)
T PRK08751        160 FPKAALVNFVVKYVKKLVPEYRINGAIRFREALALGRKH--SMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANM  237 (560)
T ss_pred             cccchhhhhhhhhhhccccccCCCccccHHHHHhccCCC--CCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHH
Confidence            00           0000000  01123344444332211  122234567899999999999999999999999998877


Q ss_pred             HhhhhccC----CCC-CcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcC-ccccccchhhhccCCcccccccCCcEEEe
Q psy6874         314 KAFSDAVH----IEP-NDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYST-PLTMIDTSSKIKRGTKGDASVLHPTALTA  386 (504)
Q Consensus       314 ~~~~~~~~----~~~-~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~~i~~~~~~~i~~~~~T~~~~  386 (504)
                      ......+.    +.+ ++++++.+|++|.+++.. .+.++..|+++++.. +....+.        ++.++++++|++.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--------~~~i~~~~~t~~~~  309 (560)
T PRK08751        238 QQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGF--------VKELKKTRFTAFTG  309 (560)
T ss_pred             HHHHHhhccccccCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHH--------HHHHHhcceeEecC
Confidence            76554443    333 467789999999999864 456667777766543 3222221        34588999999999


Q ss_pred             ccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHH
Q psy6874         387 VPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHEL  466 (504)
Q Consensus       387 vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~  466 (504)
                      +|.++..+.+...                                 .+...        .+++|.+++||+++++++.+.
T Consensus       310 ~p~~~~~l~~~~~---------------------------------~~~~~--------l~~lr~v~~gG~~~~~~~~~~  348 (560)
T PRK08751        310 VNTLFNGLLNTPG---------------------------------FDQID--------FSSLKMTLGGGMAVQRSVAER  348 (560)
T ss_pred             hHHHHHHHHcCcC---------------------------------cCCcc--------hhhheeeeeCCCCCCHHHHHH
Confidence            9999988765210                                 00111        158999999999999999999


Q ss_pred             HHHHhCCceeeeccccccccceeecc
Q psy6874         467 IKVCLCEKVIQGYGLTETTSCATVMH  492 (504)
Q Consensus       467 ~~~~~~~~v~~~YG~TEt~~~~~~~~  492 (504)
                      ++..+++++++.||+||+++.++...
T Consensus       349 ~~~~~~~~~~~~YG~tE~~~~~~~~~  374 (560)
T PRK08751        349 WKQVTGLTLVEAYGLTETSPAACINP  374 (560)
T ss_pred             HHHHhCCeEEEeeccccCCCceeccc
Confidence            99988999999999999987665543

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=2.8e-35  Score=311.60  Aligned_cols=305  Identities=21%  Similarity=0.256  Sum_probs=220.6

Q ss_pred             HHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcC
Q psy6874          93 MEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAE  172 (504)
Q Consensus        93 l~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~  172 (504)
                      +.+.++++++++|+++|+++.+                   .+.++++||+||.++++++|+.|.++  ++||+|+++++
T Consensus         4 ~~~~l~~~~~~~~~~~a~~~~~-------------------~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~   62 (525)
T PRK05851          4 LAAALSDAMTASGRDLVVLDRE-------------------SGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGE   62 (525)
T ss_pred             HHHHHHHHhcCCCCceEEeCCC-------------------CCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcC
Confidence            7788999999999999997431                   13457899999999999999999987  79999999999


Q ss_pred             CCHHHHHHHHHHHhCCCeEEEecCC-------CCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCC
Q psy6874         173 TRAEWMIAAQACFKQNIPVVTIYAT-------LGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQL  245 (504)
Q Consensus       173 n~~e~~~~~lA~~~~G~~~v~i~~~-------l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~  245 (504)
                      |++||+++++||+++|+++++++..       ...+++.+.+++++++++|++.+..+.+.....   .    +.+.+. 
T Consensus        63 ~~~e~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~---~----~~~~~~-  134 (525)
T PRK05851         63 PTVELVAAIQGAWLAGAAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDS---S----VTVHDL-  134 (525)
T ss_pred             CCHHHHHHHHHHHHcCCCCcCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhc---c----cccccc-
Confidence            9999999999999999986543311       123556678999999999998775544433211   1    001000 


Q ss_pred             CcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCC-C
Q psy6874         246 TSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIE-P  324 (504)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~-~  324 (504)
                                       .+... ...   ..+.....++++++|+|||||||.||||+++|.++.+.+......+++. +
T Consensus       135 -----------------~~~~~-~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~  193 (525)
T PRK05851        135 -----------------ATAAH-TNR---SASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAA  193 (525)
T ss_pred             -----------------ccccc-ccc---cccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCC
Confidence                             00000 000   0111224678999999999999999999999999999988888788888 8


Q ss_pred             CcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhc
Q psy6874         325 NDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSR  404 (504)
Q Consensus       325 ~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~  404 (504)
                      +|++++++|++|++++...+.+++.|+++++.+...+......    .++.++++++|++.. |.++..++.......  
T Consensus       194 ~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~----~~~~i~~~~~t~~~~-p~~~~~~l~~~~~~~--  266 (525)
T PRK05851        194 TDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAPTTAFSASPFR----WLSWLSDSRATLTAA-PNFAYNLIGKYARRV--  266 (525)
T ss_pred             CCeEEEcCCCccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHH----HHHHHHHhCCeEEeC-CcHHHHHHHHhhccc--
Confidence            9999999999999999888899999999998654222111111    123478899998754 554444332110000  


Q ss_pred             cChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHH---hCC---ceeee
Q psy6874         405 ASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVC---LCE---KVIQG  478 (504)
Q Consensus       405 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~---~~~---~v~~~  478 (504)
                                                           .....++||.+++||+++++++.++++..   +|.   ++++.
T Consensus       267 -------------------------------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~  309 (525)
T PRK05851        267 -------------------------------------SDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPS  309 (525)
T ss_pred             -------------------------------------cCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccc
Confidence                                                 00111589999999999999999888764   454   49999


Q ss_pred             ccccccccceeec
Q psy6874         479 YGLTETTSCATVM  491 (504)
Q Consensus       479 YG~TEt~~~~~~~  491 (504)
                      ||+||+++.++..
T Consensus       310 YG~TE~~~~~~~~  322 (525)
T PRK05851        310 YGLAESTCAVTVP  322 (525)
T ss_pred             cchhhhceEEEec
Confidence            9999997655543

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=5e-35  Score=368.23  Aligned_cols=308  Identities=17%  Similarity=0.226  Sum_probs=249.9

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..++.++|++.++++||++|+.+.                      + ..+||+||.++++++|+.|.++|+++|++|+|
T Consensus      3719 ~~~~~~~~~~~~~~~p~~~Av~~~----------------------~-~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v 3775 (4334)
T PRK05691       3719 EQSYVRLFEAQVAAHPQRIAASCL----------------------D-QQWSYAELNRAANRLGHALRAAGVGVDQPVAL 3775 (4334)
T ss_pred             ccCHHHHHHHHHHhCCCceEEEcC----------------------C-CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            458999999999999999999642                      2 46999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCc--eEEEEEcCCCCc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRV--STLIYMEDQLTS  247 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l--~~ii~~~~~~~~  247 (504)
                      +++++++++++++||+++|++++|++++++.+++.++++++++++++++.+..+....+.......  ..++..++    
T Consensus      3776 ~~~~s~~~~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 3851 (4334)
T PRK05691       3776 LAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEE---- 3851 (4334)
T ss_pred             EeCCCHHHHHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecc----
Confidence            999999999999999999999999999999999999999999999999987654433332222111  11111111    


Q ss_pred             ccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcE
Q psy6874         248 TDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDV  327 (504)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~  327 (504)
                                       ........  ..+.....++++++|+|||||||.||||+++|+|+++.+.+....++++++|+
T Consensus      3852 -----------------~~~~~~~~--~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~ 3912 (4334)
T PRK05691       3852 -----------------VQAGEVAS--HNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADV 3912 (4334)
T ss_pred             -----------------cccccccc--cCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccce
Confidence                             10000000  12223456799999999999999999999999999999999888899999999


Q ss_pred             EEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccCh
Q psy6874         328 FLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASP  407 (504)
Q Consensus       328 ~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~  407 (504)
                      ++.+.|++|..++..++.+++.|+++++.+.....+....     .+.++++++|++..+|+++..+.+....       
T Consensus      3913 ~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l-----~~~~~~~~vt~~~~~Ps~~~~l~~~~~~------- 3980 (4334)
T PRK05691       3913 IAQTASQSFDISVWQFLAAPLFGARVEIVPNAIAHDPQGL-----LAHVQAQGITVLESVPSLIQGMLAEDRQ------- 3980 (4334)
T ss_pred             EEEecCCchhHHHHHHHHHHhCCCEEEEcCccccCCHHHH-----HHHHHHcCCeEEEeCHHHHHHHHhhccc-------
Confidence            9999999999999999999999999999876554443222     3358899999999999999887642100       


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeecccccccc
Q psy6874         408 FKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTS  486 (504)
Q Consensus       408 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~  486 (504)
                                                           ...+||.+++||+++++++.+.|...+ +++++|+||+||++.
T Consensus      3981 -------------------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~ 4023 (4334)
T PRK05691       3981 -------------------------------------ALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSD 4023 (4334)
T ss_pred             -------------------------------------cCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCcccee
Confidence                                                 015899999999999999999887654 789999999999988


Q ss_pred             ceeecc
Q psy6874         487 CATVMH  492 (504)
Q Consensus       487 ~~~~~~  492 (504)
                      .+++..
T Consensus      4024 ~~~~~~ 4029 (4334)
T PRK05691       4024 DVAFFR 4029 (4334)
T ss_pred             EEEEEE
Confidence            776554

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=2.8e-35  Score=373.10  Aligned_cols=305  Identities=21%  Similarity=0.243  Sum_probs=246.2

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..++.++|++.++++|+++|+.+.                      + +.+||+||.++++++|+.|.+.|+++|++|++
T Consensus       510 ~~~~~~~~~~~a~~~p~~~A~~~~----------------------~-~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l  566 (5163)
T PRK12316        510 QRGVHRLFEEQVERTPEAPALAFG----------------------E-ETLDYAELNRRANRLAHALIERGVGPDVLVGV  566 (5163)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEeC----------------------C-ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            457999999999999999999632                      2 57999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD  249 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~  249 (504)
                      +++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.    ..... .++.++..     
T Consensus       567 ~~~~s~~~i~~~la~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~----~~~~~-~~~~~~~~-----  636 (5163)
T PRK12316        567 AMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLP----LAAGV-QVLDLDRP-----  636 (5163)
T ss_pred             EeCCCHHHHHHHHHHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCC----cccCc-eEEEecCc-----
Confidence            999999999999999999999999999999999999999999999999876533221    11111 22222211     


Q ss_pred             ccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEE
Q psy6874         250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFL  329 (504)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l  329 (504)
                                   .........   ..+.....++++++|+|||||||.||||+++|+++++.+.+....++++++|+++
T Consensus       637 -------------~~~~~~~~~---~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l  700 (5163)
T PRK12316        637 -------------AAWLEGYSE---ENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVL  700 (5163)
T ss_pred             -------------chhhccCCC---CCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEE
Confidence                         000000000   2222345678999999999999999999999999999999998889999999999


Q ss_pred             EecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHH
Q psy6874         330 GYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFK  409 (504)
Q Consensus       330 ~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~  409 (504)
                      ..+|++|..++..++.+|+.|+++++.++....+....     .+.++++++|++.++|++++.+.+...  .       
T Consensus       701 ~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~~~-----~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~-------  766 (5163)
T PRK12316        701 QKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRDPAKL-----VELINREGVDTLHFVPSMLQAFLQDED--V-------  766 (5163)
T ss_pred             eeCCeehHHHHHHHHHHHhCCCEEEECCccccCCHHHH-----HHHHHHcCCeEEEeCHHHHHHHHhccc--c-------
Confidence            99999999999889999999999999866544443222     335889999999999999998865210  0       


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeeccccccccce
Q psy6874         410 RALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTSCA  488 (504)
Q Consensus       410 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~~~  488 (504)
                                                        ...+++|.+++||+++++++.+.+...+ +++++|+||+||++..+
T Consensus       767 ----------------------------------~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~  812 (5163)
T PRK12316        767 ----------------------------------ASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDV  812 (5163)
T ss_pred             ----------------------------------ccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeee
Confidence                                              0015899999999999999999886655 78999999999998655


Q ss_pred             eec
Q psy6874         489 TVM  491 (504)
Q Consensus       489 ~~~  491 (504)
                      +..
T Consensus       813 ~~~  815 (5163)
T PRK12316        813 THW  815 (5163)
T ss_pred             eEE
Confidence            444

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=5.6e-35  Score=370.41  Aligned_cols=308  Identities=19%  Similarity=0.257  Sum_probs=247.5

Q ss_pred             CCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeE
Q psy6874          88 DGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNV  167 (504)
Q Consensus        88 ~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V  167 (504)
                      +...++.++|++.++++|+++|+.+.                       .+.+||+||.++++++|+.|.+.|+++|++|
T Consensus      4548 ~~~~~~~~l~~~~a~~~p~~~Av~~~-----------------------~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V 4604 (5163)
T PRK12316       4548 PATRCVHQLVAERARMTPDAVAVVFD-----------------------EEKLTYAELNRRANRLAHALIARGVGPEVLV 4604 (5163)
T ss_pred             CccccHHHHHHHHHHhCCCCeEEEeC-----------------------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            34568999999999999999999632                       1579999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCc
Q psy6874         168 VIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTS  247 (504)
Q Consensus       168 ai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~  247 (504)
                      +|+++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.    ...... ++.++..   
T Consensus      4605 ~i~~~~s~~~iv~~lavl~aG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~-~~~~~~~--- 4676 (5163)
T PRK12316       4605 GIAMERSAEMMVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLTQSHLLQRLP----IPDGLA-SLALDRD--- 4676 (5163)
T ss_pred             EEEeCCCHHHHHHHHHHHHhCcEEecCCCCChHHHHHHHHHhcCCCEEEechhhhhhcc----cccCcc-eEeecch---
Confidence            99999999999999999999999999999999999999999999999999876543321    011111 1111111   


Q ss_pred             ccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcE
Q psy6874         248 TDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDV  327 (504)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~  327 (504)
                                     .+. . ....  ..+.....++++++|+|||||||.||||+++|+++++.+.+....++++++|+
T Consensus      4677 ---------------~~~-~-~~~~--~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~ 4737 (5163)
T PRK12316       4677 ---------------EDW-E-GFPA--HDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPDDR 4737 (5163)
T ss_pred             ---------------hhc-c-cCCc--cCCccCCCCCceEEEEECCCCCCCCCEeeeccHHHHHHHHHHHHhcCCCcCCe
Confidence                           000 0 0000  12233456799999999999999999999999999999999888899999999


Q ss_pred             EEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccCh
Q psy6874         328 FLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASP  407 (504)
Q Consensus       328 ~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~  407 (504)
                      +++++|++|..+...++.+|+.|+++++.+.... +....     ++.++++++|++.++|++++.+.+.....      
T Consensus      4738 ~l~~~~~~fd~~~~~~~~~L~~G~~lvi~~~~~~-~~~~l-----~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~------ 4805 (5163)
T PRK12316       4738 VLQFMSFSFDGSHEGLYHPLINGASVVIRDDSLW-DPERL-----YAEIHEHRVTVLVFPPVYLQQLAEHAERD------ 4805 (5163)
T ss_pred             EEEecCcchhhHHHHHHHHHhCCCEEEEcCcccC-CHHHH-----HHHHHHcCCEEEEcCHHHHHHHHhhhccc------
Confidence            9999999999998888999999999999765432 22222     34588999999999999999887632110      


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeecccccccc
Q psy6874         408 FKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTS  486 (504)
Q Consensus       408 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~  486 (504)
                                                          ...++||.+++||+++++++.+.+...+ +++++++||+||+++
T Consensus      4806 ------------------------------------~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~ 4849 (5163)
T PRK12316       4806 ------------------------------------GEPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTV 4849 (5163)
T ss_pred             ------------------------------------cCCCCccEEEEecccCCHHHHHHHHHhCCCCEEEecccCccceE
Confidence                                                0126899999999999999987776544 789999999999988


Q ss_pred             ceeeccc
Q psy6874         487 CATVMHL  493 (504)
Q Consensus       487 ~~~~~~~  493 (504)
                      .++....
T Consensus      4850 ~~~~~~~ 4856 (5163)
T PRK12316       4850 TVLLWKA 4856 (5163)
T ss_pred             EEEEEEc
Confidence            7766543

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.3e-34  Score=303.47  Aligned_cols=321  Identities=18%  Similarity=0.142  Sum_probs=238.3

Q ss_pred             CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Q psy6874          91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIF  170 (504)
Q Consensus        91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~  170 (504)
                      .++.+.|++.++.+|+++|+..                      ++ ..+||+||.++++++|+.|.+.|+++||+|+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~a~~~----------------------~~-~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~   74 (545)
T PRK08162         18 LTPLSFLERAAEVYPDRPAVIH----------------------GD-RRRTWAETYARCRRLASALARRGIGRGDTVAVL   74 (545)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEE----------------------CC-eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            4688899999999999999853                      11 469999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcccc
Q psy6874         171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDT  250 (504)
Q Consensus       171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~  250 (504)
                      ++|+++++++++||+++|++++|+++.++.+++.+++++++++.++++.+..+.+.+.....+..+. +.++..  ....
T Consensus        75 ~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~  151 (545)
T PRK08162         75 LPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKP-LVIDVD--DPEY  151 (545)
T ss_pred             CCCchHHHHHHHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCce-EEEecC--cccc
Confidence            9999999999999999999999999999999999999999999999999887777665444443322 222211  0000


Q ss_pred             cccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEE
Q psy6874         251 TNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLG  330 (504)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~  330 (504)
                      . ........+++++.......  .....+.+.+++++|+|||||||.||||+++|.++............+..+|++++
T Consensus       152 ~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~  228 (545)
T PRK08162        152 P-GGRFIGALDYEAFLASGDPD--FAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLW  228 (545)
T ss_pred             c-cCCCcccccHHHHhccCCcc--ccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEe
Confidence            0 01112334566665432211  11112334568999999999999999999999998776655555567788999999


Q ss_pred             ecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHH
Q psy6874         331 YLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKR  410 (504)
Q Consensus       331 ~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~  410 (504)
                      .+|++|.+++...+...+.|++..+.......+.        ++.++++++|++.++|.++..+.+......        
T Consensus       229 ~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--------  292 (545)
T PRK08162        229 TLPMFHCNGWCFPWTVAARAGTNVCLRKVDPKLI--------FDLIREHGVTHYCGAPIVLSALINAPAEWR--------  292 (545)
T ss_pred             ccCcHhhhhHHHHHHHHHHccEEEEeCCCCHHHH--------HHHHHHcCCeEEEechHHHHHHHhCccccc--------
Confidence            9999999998764444445555554433222111        345899999999999999999875311000        


Q ss_pred             HHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccceee
Q psy6874         411 ALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATV  490 (504)
Q Consensus       411 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~~  490 (504)
                                                      .. ..+.+.+++||+++++++.++++. +++++++.||+||+++.++.
T Consensus       293 --------------------------------~~-~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~  338 (545)
T PRK08162        293 --------------------------------AG-IDHPVHAMVAGAAPPAAVIAKMEE-IGFDLTHVYGLTETYGPATV  338 (545)
T ss_pred             --------------------------------cC-CccceEEEECCCCCCHHHHHHHHH-hCCceeecccccccCcceee
Confidence                                            00 024555678999999999999876 49999999999998654444

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.7e-34  Score=308.44  Aligned_cols=325  Identities=20%  Similarity=0.304  Sum_probs=234.9

Q ss_pred             CCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEE
Q psy6874          89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVV  168 (504)
Q Consensus        89 ~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Va  168 (504)
                      ..+++.+++.+.+..+|+++|+...                       .+.+||+||.+++.++|+.|.+.|+++||+|+
T Consensus        22 ~~~~~~~~~~~~a~~~p~~~a~~~~-----------------------~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~   78 (563)
T PRK06710         22 DIQPLHKYVEQMASRYPEKKALHFL-----------------------GKDITFSVFHDKVKRFANYLQKLGVEKGDRVA   78 (563)
T ss_pred             CcccHHHHHHHHHHHCCCceEEEec-----------------------CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            3457899999999999999999632                       15699999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCC--CC
Q psy6874         169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQ--LT  246 (504)
Q Consensus       169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~--~~  246 (504)
                      ++++|+++++++++||+++|++++|+++..+.+++.++++.++++++++++...+.+..+... .....++.....  ..
T Consensus        79 i~~~~~~~~~~~~lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  157 (563)
T PRK06710         79 IMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSA-TKIEHVIVTRIADFLP  157 (563)
T ss_pred             EECCCChHHHHHHHHHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchh-hccceeEEeccccccc
Confidence            999999999999999999999999999999999999999999999999988755444332211 112233222110  00


Q ss_pred             cccc---c---c--------cCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHH
Q psy6874         247 STDT---T---N--------FKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST  312 (504)
Q Consensus       247 ~~~~---~---~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~  312 (504)
                      ....   .   .        .........|+.+......   .........+++++++|||||||.||||.++|.++..+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~  234 (563)
T PRK06710        158 FPKNLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEVNT---GVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSN  234 (563)
T ss_pred             cccccccchhhcccccccccccccchhhhhhhhhhcccc---ccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHH
Confidence            0000   0   0        0000000112222111100   11111123578999999999999999999999999765


Q ss_pred             HHhhhh-ccCCC-CCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccH
Q psy6874         313 LKAFSD-AVHIE-PNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPL  389 (504)
Q Consensus       313 ~~~~~~-~~~~~-~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~  389 (504)
                      ...... ..... .++++++.+|++|.+++.. .+.+++.|+++++.++......        ++.++++++|++.++|+
T Consensus       235 ~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~--------~~~i~~~~~t~~~~~P~  306 (563)
T PRK06710        235 TLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMV--------FEAIKKHKVTLFPGAPT  306 (563)
T ss_pred             HHHHHhhccCCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHH--------HHHHHHcCCeEEeccHH
Confidence            433322 22333 4568899999999999875 5578889999998765432222        34588999999999999


Q ss_pred             HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHH
Q psy6874         390 ILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKV  469 (504)
Q Consensus       390 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~  469 (504)
                      ++..+.+....                                 .        ....+++|.+++||+++++++.++++.
T Consensus       307 ~~~~l~~~~~~---------------------------------~--------~~~~~~lr~v~~gg~~~~~~~~~~~~~  345 (563)
T PRK06710        307 IYIALLNSPLL---------------------------------K--------EYDISSIRACISGSAPLPVEVQEKFET  345 (563)
T ss_pred             HHHHHHcCCcc---------------------------------c--------cCChhhhhheeeCCCcCCHHHHHHHHH
Confidence            99887652100                                 0        001147999999999999999999999


Q ss_pred             HhCCceeeecccccccccee
Q psy6874         470 CLCEKVIQGYGLTETTSCAT  489 (504)
Q Consensus       470 ~~~~~v~~~YG~TEt~~~~~  489 (504)
                      .+++++++.||+||+++..+
T Consensus       346 ~~~~~~~~~YG~tE~~~~~~  365 (563)
T PRK06710        346 VTGGKLVEGYGLTESSPVTH  365 (563)
T ss_pred             hhCCCEecccccccCccccc
Confidence            88999999999999976543

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-34  Score=303.18  Aligned_cols=289  Identities=16%  Similarity=0.212  Sum_probs=222.3

Q ss_pred             HHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHH
Q psy6874          98 RYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEW  177 (504)
Q Consensus        98 ~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~  177 (504)
                      +.+++.+||++|+...                     .+.+.+||.|+.+.++++|+.|.+.|+++||+|+++++|+++|
T Consensus         2 ~~~a~~~p~~~a~~~~---------------------~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~   60 (488)
T PRK09088          2 AFHARLQPQRLAAVDL---------------------ALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWL   60 (488)
T ss_pred             chhhhhCCCceEEEec---------------------CCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence            3456789999988521                     1125799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcccccccCCCc
Q psy6874         178 MIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGI  257 (504)
Q Consensus       178 ~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~  257 (504)
                      +++++||++.|++++|+++.++.+++.++++++++++++++++....      ..    .                    
T Consensus        61 ~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~------~~----~--------------------  110 (488)
T PRK09088         61 VALHFACARVGAIYVPLNWRLSASELDALLQDAEPRLLLGDDAVAAG------RT----D--------------------  110 (488)
T ss_pred             HHHHHHHHHcCeEEEeeCccCCHHHHHHHHHhCCCCEEEEcchhhcc------cc----c--------------------
Confidence            99999999999999999999999999999999999999998653221      00    0                    


Q ss_pred             eeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEEecChHHH
Q psy6874         258 EIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHV  337 (504)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~  337 (504)
                       ...++++........ ........++++++++|||||||.||+|.++|+++...+..+.....+..+|++++.+|++|+
T Consensus       111 -~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~  188 (488)
T PRK09088        111 -VEDLAAFIASADALE-PADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHI  188 (488)
T ss_pred             -ccchhhhhhhccccc-cccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHH
Confidence             011122211111100 111123456889999999999999999999999998887777666678899999999999999


Q ss_pred             HHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccc--cccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHH
Q psy6874         338 FELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDA--SVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFA  414 (504)
Q Consensus       338 ~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i--~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~  414 (504)
                      +++.. ++.++..|+++++.+.........        .+  .++++|++.++|.+++.+.+...               
T Consensus       189 ~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~--------~~~~~~~~~t~~~~~P~~~~~l~~~~~---------------  245 (488)
T PRK09088        189 IGLITSVRPVLAVGGSILVSNGFEPKRTLG--------RLGDPALGITHYFCVPQMAQAFRAQPG---------------  245 (488)
T ss_pred             HHHHHHHHHHHhcCCEEEEcCCCCHHHHHH--------HHHhhccCCcEEeeHHHHHHHHHhCcC---------------
Confidence            99885 567888899998876543322211        23  25899999999999988765210               


Q ss_pred             HHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccccccccee
Q psy6874         415 FAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCAT  489 (504)
Q Consensus       415 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~  489 (504)
                                        .+        ....+++|.+++||++++++..+.+... |+++++.||+||+++...
T Consensus       246 ------------------~~--------~~~~~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~  293 (488)
T PRK09088        246 ------------------FD--------AAALRHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFG  293 (488)
T ss_pred             ------------------cC--------ccccccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccc
Confidence                              00        0011589999999999999988877654 899999999999976543

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=3.6e-34  Score=301.64  Aligned_cols=301  Identities=16%  Similarity=0.180  Sum_probs=238.8

Q ss_pred             CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Q psy6874          91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIF  170 (504)
Q Consensus        91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~  170 (504)
                      .++.+++++.++.+|+++++...                       .+.+||.||.+.++++|..|.+.|+++|++|+++
T Consensus         2 ~~~~~~l~~~a~~~p~~~~~~~~-----------------------~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~   58 (503)
T PRK04813          2 MDIIETIEEFAQTQPDFPAYDYL-----------------------GEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVF   58 (503)
T ss_pred             chHHHHHHHHHHhCCCceEEEeC-----------------------CcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            46789999999999999998531                       1579999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcccc
Q psy6874         171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDT  250 (504)
Q Consensus       171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~  250 (504)
                      ++|+.+|+++++||++.|++++|+++.++.+++.++++.+++++++++++....       ...                
T Consensus        59 ~~~~~~~~~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----------------  115 (503)
T PRK04813         59 GHMSPEMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLE-------ILG----------------  115 (503)
T ss_pred             cCCCHHHHHHHHHHHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEeccccccc-------ccC----------------
Confidence            999999999999999999999999999999999999999999999998764100       000                


Q ss_pred             cccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEE
Q psy6874         251 TNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLG  330 (504)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~  330 (504)
                            .....++++.................++++++++|||||||.||+|.++|.++...+......+.+..+|+++.
T Consensus       116 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~  189 (503)
T PRK04813        116 ------IPVITLDELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLN  189 (503)
T ss_pred             ------CcEEehHHhhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeee
Confidence                  11122222221110000011123346788999999999999999999999999998888777788899999999


Q ss_pred             ecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHH
Q psy6874         331 YLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKR  410 (504)
Q Consensus       331 ~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~  410 (504)
                      .+|++|..++...+.++..|+++++.+.....+....     +..++++++|++..+|.++..+.....           
T Consensus       190 ~~p~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~-----~~~~~~~~~t~~~~~p~~~~~~~~~~~-----------  253 (503)
T PRK04813        190 QAPYSFDLSVMDLYPTLASGGTLVALPKDMTANFKQL-----FETLPQLPINVWVSTPSFADMCLLDPS-----------  253 (503)
T ss_pred             cCCcchhHhHHHHHHHHhcCCEEEEcChhhhcCHHHH-----HHHHHHcCCeEEEeChHHHHHHHHhhc-----------
Confidence            9999999998888899999999988765333332222     335789999999999999877654210           


Q ss_pred             HHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeecccccccccee
Q psy6874         411 ALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTSCAT  489 (504)
Q Consensus       411 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~~~~  489 (504)
                                                    ..+...+++|.++++|+++++++.+++++.+ ++++++.||+||++...+
T Consensus       254 ------------------------------~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~  303 (503)
T PRK04813        254 ------------------------------FNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVT  303 (503)
T ss_pred             ------------------------------cCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEE
Confidence                                          0011126899999999999999999999888 789999999999975444

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.8e-34  Score=301.41  Aligned_cols=302  Identities=16%  Similarity=0.179  Sum_probs=220.9

Q ss_pred             HHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHH
Q psy6874         100 VVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMI  179 (504)
Q Consensus       100 ~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~  179 (504)
                      .++.+|+++|+.+.                     .+.+.+||+||.++++++|+.|.++|+++||+|+++++|++++++
T Consensus         6 ~a~~~p~~~a~~~~---------------------~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~   64 (501)
T PRK13390          6 HAQIAPDRPAVIVA---------------------ETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALV   64 (501)
T ss_pred             hhhhCCCCcEEEec---------------------CCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHH
Confidence            45678999998532                     122579999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcccccccCCCcee
Q psy6874         180 AAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEI  259 (504)
Q Consensus       180 ~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~  259 (504)
                      +++||+++|++++|+++.++++++.+++++++++++++++...........   .....+.+...     .      ...
T Consensus        65 ~~la~~~~Ga~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~-----~------~~~  130 (501)
T PRK13390         65 VLWAALRSGLYITAINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGA---DLPLRLSFGGE-----I------DGF  130 (501)
T ss_pred             HHHHHHHhCCEEeccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhh---ccceEEEecCc-----c------ccc
Confidence            999999999999999999999999999999999999998764332222211   11112222111     0      011


Q ss_pred             eehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEe--cHHHHHHHHH----hhhhccCCCCCcEEEEecC
Q psy6874         260 VPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVL--THDNMISTLK----AFSDAVHIEPNDVFLGYLP  333 (504)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~--th~~l~~~~~----~~~~~~~~~~~d~~l~~lP  333 (504)
                      ..+++.....     . + .....+++++|+|||||||.||||++  +|.++.....    .....+.+..+|++++.+|
T Consensus       131 ~~~~~~~~~~-----~-~-~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  203 (501)
T PRK13390        131 GSFEAALAGA-----G-P-RLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAP  203 (501)
T ss_pred             ccHHHHhccc-----C-C-CCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEeccc
Confidence            2233332211     0 0 11123357999999999999999995  5555544221    1123457788999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHH
Q psy6874         334 LAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALF  413 (504)
Q Consensus       334 l~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~  413 (504)
                      ++|.+++......+..|+++++.+......        .++.++++++|++.++|+++..+.+...+..           
T Consensus       204 ~~h~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----------  264 (501)
T PRK13390        204 IYHAAPLRWCSMVHALGGTVVLAKRFDAQA--------TLGHVERYRITVTQMVPTMFVRLLKLDADVR-----------  264 (501)
T ss_pred             chhhhHHHHHHHHHhcCceEEEcCCcCHHH--------HHHHHHHcCCeEEEecHHHHHHHHhccchhc-----------
Confidence            999998865555677899998876432222        1446889999999999999988865211000           


Q ss_pred             HHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccceee
Q psy6874         414 AFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATV  490 (504)
Q Consensus       414 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~~  490 (504)
                                                  +.....++|.+++||+++++++.+.+++.++.+++++||+||+++....
T Consensus       265 ----------------------------~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~  313 (501)
T PRK13390        265 ----------------------------TRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFI  313 (501)
T ss_pred             ----------------------------ccCChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEe
Confidence                                        0001157999999999999999999999899999999999999764443

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=3.7e-34  Score=298.10  Aligned_cols=275  Identities=19%  Similarity=0.198  Sum_probs=224.7

Q ss_pred             HHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHH
Q psy6874          97 LRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAE  176 (504)
Q Consensus        97 ~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e  176 (504)
                      +++.++++|+++|+..                       +.+.+||.|+.++++++|+.|.+.|+++||+|+++++|+++
T Consensus         9 ~~~~a~~~~~~~a~~~-----------------------~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~   65 (458)
T PRK09029          9 WRHWAQVRPQAIALRL-----------------------NDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPE   65 (458)
T ss_pred             HHHHHHhCCCceeeec-----------------------CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHH
Confidence            3566889999999852                       12569999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcccccccCCC
Q psy6874         177 WMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQG  256 (504)
Q Consensus       177 ~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~  256 (504)
                      ++++++||+++|++++|+++.++++++.++++++++++++++++... +..       +....                 
T Consensus        66 ~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-------~~~~~-----------------  120 (458)
T PRK09029         66 TLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSA-------LTSLH-----------------  120 (458)
T ss_pred             HHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh-------ccccc-----------------
Confidence            99999999999999999999999999999999999999999876422 110       00000                 


Q ss_pred             ceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEEecChHH
Q psy6874         257 IEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAH  336 (504)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h  336 (504)
                           ..     .. .  ........++++++++|||||||.||||+++|+++...+......+++.++|+++..+|++|
T Consensus       121 -----~~-----~~-~--~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h  187 (458)
T PRK09029        121 -----LQ-----LV-E--GAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFH  187 (458)
T ss_pred             -----cc-----cc-c--ccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHh
Confidence                 00     00 0  11122346789999999999999999999999999999988888889999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHH
Q psy6874         337 VFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFA  416 (504)
Q Consensus       337 ~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~  416 (504)
                      ++++...+.++..|+++++.+...+.+           .+  .++|.+..+|+++.++......                
T Consensus       188 ~~g~~~~~~~l~~G~~v~~~~~~~~~~-----------~i--~~~t~~~~~P~~~~~l~~~~~~----------------  238 (458)
T PRK09029        188 VSGQGIVWRWLYAGATLVVRDKQPLEQ-----------AL--AGCTHASLVPTQLWRLLDNRSE----------------  238 (458)
T ss_pred             hhhhHHHHHHHhCCceEEeCChHHHHH-----------HH--hhceeeecChHHHHHHHhcccc----------------
Confidence            999887778899999999877533322           23  3789999999999887652110                


Q ss_pred             HHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccceeec
Q psy6874         417 FEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVM  491 (504)
Q Consensus       417 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~~~  491 (504)
                                                   ..++|.+++||+++++++.++++. +|++++++||+||++...+..
T Consensus       239 -----------------------------~~~l~~i~~gG~~~~~~~~~~~~~-~g~~~~~~YG~tE~~~~~~~~  283 (458)
T PRK09029        239 -----------------------------PLSLKAVLLGGAAIPVELTEQAEQ-QGIRCWCGYGLTEMASTVCAK  283 (458)
T ss_pred             -----------------------------CCcceEEEECCCCCCHHHHHHHHH-cCCcEeccccccccCcceecc
Confidence                                         137999999999999999999886 499999999999997654443

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.3e-33  Score=301.50  Aligned_cols=339  Identities=20%  Similarity=0.287  Sum_probs=243.9

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCeEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRS-LGQEPRHNVV  168 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gv~~gd~Va  168 (504)
                      ..++.++|+++++++|+++|+...                       .+.+||.|+.++++++|..|.+ .|+++|++|+
T Consensus        22 ~~~l~~~l~~~a~~~p~~~a~~~~-----------------------~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~   78 (560)
T PRK08974         22 YQSLVDMFEQAVARYADQPAFINM-----------------------GEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVA   78 (560)
T ss_pred             cccHHHHHHHHHHhCCCCceEEEC-----------------------CccccHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            347889999999999999998621                       2579999999999999999984 8999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcc
Q psy6874         169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTST  248 (504)
Q Consensus       169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~  248 (504)
                      ++++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++++..+.+.++.... ..+.++.........
T Consensus        79 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  157 (560)
T PRK08974         79 LMMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKT-PVKHVILTRMGDQLS  157 (560)
T ss_pred             EECCCCHHHHHHHHHHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhc-CcceEEEeccccccc
Confidence            9999999999999999999999999999999999999999999999999887655555543322 233333221110000


Q ss_pred             ccc-------------ccC--CCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHH
Q psy6874         249 DTT-------------NFK--QGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTL  313 (504)
Q Consensus       249 ~~~-------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~  313 (504)
                      ...             ..+  .......+.+....+...  ........++++++|+|||||||.||+|.++|.++..++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~  235 (560)
T PRK08974        158 TAKGTLVNFVVKYIKRLVPKYHLPDAISFRSALHKGRRM--QYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANL  235 (560)
T ss_pred             ccccccccchhhhcccccccccCCCcccHHHHhhccCCC--CCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHH
Confidence            000             000  000112223332222111  111123467899999999999999999999999998876


Q ss_pred             Hhhhhcc---CCCCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcC-ccccccchhhhccCCcccccccCCcEEEecc
Q psy6874         314 KAFSDAV---HIEPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYST-PLTMIDTSSKIKRGTKGDASVLHPTALTAVP  388 (504)
Q Consensus       314 ~~~~~~~---~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP  388 (504)
                      ......+   ....+++++..+|++|++++.. .+.++..|+++++.. +.....        .++.++++++|.+.++|
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~--------~~~~i~~~~~t~~~~~p  307 (560)
T PRK08974        236 EQAKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPG--------FVKELKKYPFTAITGVN  307 (560)
T ss_pred             HHHHHhhccccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHH--------HHHHHHhcCcceEcCcH
Confidence            5443322   2345678899999999999764 667788898877653 221111        13457899999999999


Q ss_pred             HHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHH
Q psy6874         389 LILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIK  468 (504)
Q Consensus       389 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~  468 (504)
                      .++..+.+....                                         .....+++|.+++||+++++++.++++
T Consensus       308 ~~~~~l~~~~~~-----------------------------------------~~~~~~~lr~~~~gg~~~~~~~~~~~~  346 (560)
T PRK08974        308 TLFNALLNNEEF-----------------------------------------QELDFSSLKLSVGGGMAVQQAVAERWV  346 (560)
T ss_pred             HHHHHHHhCcCc-----------------------------------------ccCCccceeEEEecCccCCHHHHHHHH
Confidence            999988652100                                         001125899999999999999999999


Q ss_pred             HHhCCceeeeccccccccceeecccCCCCCccCCC
Q psy6874         469 VCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNG  503 (504)
Q Consensus       469 ~~~~~~v~~~YG~TEt~~~~~~~~~~d~~~~~s~G  503 (504)
                      ..+|+++++.||+||++..++.+..+.....+++|
T Consensus       347 ~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G  381 (560)
T PRK08974        347 KLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIG  381 (560)
T ss_pred             HHhCCcEEeeecccccCceeeccCCCCcccCCccc
Confidence            88899999999999998776655433222333444

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=3.2e-35  Score=277.14  Aligned_cols=319  Identities=20%  Similarity=0.260  Sum_probs=262.3

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      -+++.+++.+++.++||++|+..                      ++ +.+||+||.++++++|.+|+++|+++||+|.+
T Consensus        27 d~~l~d~L~~~A~~~pdriAv~d----------------------~~-~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlv   83 (542)
T COG1021          27 DRTLTDILTDHAARYPDRIAVID----------------------GE-RRLSYAELDQRADRLAAGLRRLGIKPGDTVLV   83 (542)
T ss_pred             CCcHHHHHHHHHhhcCCceEEec----------------------Cc-ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            45799999999999999999962                      22 56999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCC-----chhHHHHHhhcCCCceEEEEEcCC
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHD-----LLPKFRNILKLTPRVSTLIYMEDQ  244 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~-----~~~~~~~~~~~~~~l~~ii~~~~~  244 (504)
                      .++|..||.+++||+++.|+.+|.-=|.....+|.+....++++.+|.+..     ..+..++...+.+.++++++.++.
T Consensus        84 QLpN~~ef~~~~FALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~  163 (542)
T COG1021          84 QLPNVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEA  163 (542)
T ss_pred             ECCchHHHHHHHHHHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCC
Confidence            999999999999999999999999888888999999999999999998863     335566777888999999988553


Q ss_pred             CCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCC
Q psy6874         245 LTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEP  324 (504)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~  324 (504)
                      . +.          ...+..+......   ..+..+.+++++++...+-||||.||-+..||.....++....+..+++.
T Consensus       164 ~-~~----------~~~~~~~~~~a~~---~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~  229 (542)
T COG1021         164 E-HP----------SVLEAALCHPAGL---FTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQ  229 (542)
T ss_pred             C-Cc----------chhhhhhhCcccc---CCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCc
Confidence            1 00          1112222221111   33345667889999999999999999999999999999888888899999


Q ss_pred             CcEEEEecChHHHHHHHH--HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHH
Q psy6874         325 NDVFLGYLPLAHVFELLS--ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKV  402 (504)
Q Consensus       325 ~d~~l~~lPl~h~~~~~~--~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~  402 (504)
                      ++++++.+|..|.+.+.+  .+..++.|+++++.+........        -.|+++++|+...||.+....++..... 
T Consensus       230 ~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~psp~~~F--------~lIerh~Vt~tALVPpla~LWlqa~e~~-  300 (542)
T COG1021         230 QTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCF--------PLIERHGVTVTALVPPLASLWLQAAEWE-  300 (542)
T ss_pred             cceEEEecccccCCCCCCcchhheeeeccEEEECCCCCHHHHH--------HHHHHhccceEEeccHHHHHHHHhhhcc-
Confidence            999999999999999984  88999999999997443332222        2488999999999999988887753321 


Q ss_pred             hccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccc
Q psy6874         403 SRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLT  482 (504)
Q Consensus       403 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~T  482 (504)
                                                              ...++|||++-+||+.++++..+++...+||.+-|.+||.
T Consensus       301 ----------------------------------------~~~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMA  340 (542)
T COG1021         301 ----------------------------------------RADLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMA  340 (542)
T ss_pred             ----------------------------------------cCCchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhh
Confidence                                                    2233799999999999999999999999999999999999


Q ss_pred             ccccceeecccCCC
Q psy6874         483 ETTSCATVMHLNDM  496 (504)
Q Consensus       483 Et~~~~~~~~~~d~  496 (504)
                      |.  .+.++..+|.
T Consensus       341 EG--LvnyTRLDDp  352 (542)
T COG1021         341 EG--LVNYTRLDDP  352 (542)
T ss_pred             hh--hhcccccCCc
Confidence            95  4555555553

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.7e-34  Score=302.87  Aligned_cols=328  Identities=16%  Similarity=0.173  Sum_probs=242.0

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..++.++|+++++.+|+++|+.+.                       .+.+||.||.++++++|+.|.+.|+++|++|++
T Consensus        32 ~~~l~~~l~~~a~~~p~~~al~~~-----------------------~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i   88 (567)
T PRK06178         32 ERPLTEYLRAWARERPQRPAIIFY-----------------------GHVITYAELDELSDRFAALLRQRGVGAGDRVAV   88 (567)
T ss_pred             cccHHHHHHHHHHHCCCceEEEEC-----------------------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            457999999999999999998532                       147999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD  249 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~  249 (504)
                      +++|+++|+++++||+++|++++|+++..+.+++.++++.+++++++++++..+.+.++.... .++.++..+.......
T Consensus        89 ~~~n~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~-~~~~i~~~~~~~~~~~  167 (567)
T PRK06178         89 FLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET-SLRHVIVTSLADVLPA  167 (567)
T ss_pred             ECCCCcHHHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC-CcceEEEecccccccc
Confidence            999999999999999999999999999999999999999999999999988777666554333 3444444332100000


Q ss_pred             cc--ccCCC-----ceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhh-ccC
Q psy6874         250 TT--NFKQG-----IEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD-AVH  321 (504)
Q Consensus       250 ~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~-~~~  321 (504)
                      ..  ..+..     .....+.++.+...............++++++|+|||||||.||||++||.|+...+..... ...
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~  247 (567)
T PRK06178        168 EPTLPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVV  247 (567)
T ss_pred             ccccccccccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhcc
Confidence            00  00000     00112223322221110011223356789999999999999999999999999877655433 356


Q ss_pred             CCCCcEEEEecChHHHHHHH-HHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHH
Q psy6874         322 IEPNDVFLGYLPLAHVFELL-SESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHE  400 (504)
Q Consensus       322 ~~~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~  400 (504)
                      +.++|++++++|++|++++. ..+.++..|+++++.+.......        +..++++++|.+.++|..+..+.+... 
T Consensus       248 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~--------~~~i~~~~~t~~~~~~~~~~~l~~~~~-  318 (567)
T PRK06178        248 GGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAF--------MAAVERYRVTRTVMLVDNAVELMDHPR-  318 (567)
T ss_pred             CCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHH--------HHHHHHhCCeEEeccHHHHHHHHhCCC-
Confidence            78899999999999999986 47788999999999764332221        345889999999999998877654200 


Q ss_pred             HHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEE--ccCCCCHHHHHHHHHHhCCceee-
Q psy6874         401 KVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILS--GGAPLSPDTHELIKVCLCEKVIQ-  477 (504)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~--gG~~l~~~~~~~~~~~~~~~v~~-  477 (504)
                                                      ...        ....++|.+..  +++++++++.+.++..+|..++. 
T Consensus       319 --------------------------------~~~--------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  358 (567)
T PRK06178        319 --------------------------------FAE--------YDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEA  358 (567)
T ss_pred             --------------------------------CCC--------CCcchheeeeeccccccCCHHHHHHHHHHhCCccccc
Confidence                                            000        01135666544  46899999999999888887775 


Q ss_pred             eccccccccceee
Q psy6874         478 GYGLTETTSCATV  490 (504)
Q Consensus       478 ~YG~TEt~~~~~~  490 (504)
                      .||+||+++.++.
T Consensus       359 ~YG~tE~~~~~~~  371 (567)
T PRK06178        359 AWGMTETHTCDTF  371 (567)
T ss_pred             cccccccccccee
Confidence            7999998765444

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.1e-34  Score=307.25  Aligned_cols=319  Identities=21%  Similarity=0.275  Sum_probs=233.7

Q ss_pred             cCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy6874          87 RDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHN  166 (504)
Q Consensus        87 ~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~  166 (504)
                      .++..++.++++..++.+|+..++..            +        .+.++.+||.||+++++++|++|+++|+++||+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~--------~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~   76 (579)
T PRK09192         17 YADFPTLVEALDYAALGEAGMNFYDR------------R--------GQLEEALPYQTLRARAEAGARRLLALGLKPGDR   76 (579)
T ss_pred             ccchhhHHHHHHHhhccCCceEEEec------------C--------CCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence            34566999999999998887655421            0        122467999999999999999999999999999


Q ss_pred             EEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCC-------HHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEE
Q psy6874         167 VVIFAETRAEWMIAAQACFKQNIPVVTIYATLG-------EEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLI  239 (504)
Q Consensus       167 Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii  239 (504)
                      |+++++|+++|+++++||+++|++++|+++.+.       .+++.++++.+++++++++++..+.+.++....+   .+ 
T Consensus        77 V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~---~~-  152 (579)
T PRK09192         77 VALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNP---LL-  152 (579)
T ss_pred             EEEEcCCchhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcccc---cc-
Confidence            999999999999999999999999999987543       6899999999999999999876655544322111   11 


Q ss_pred             EEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhh-
Q psy6874         240 YMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD-  318 (504)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~-  318 (504)
                                        .+..++++......   ........++++++|+|||||||.||||+++|.++..++..... 
T Consensus       153 ------------------~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~  211 (579)
T PRK09192        153 ------------------HVLSHAWFKALPEA---DVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHD  211 (579)
T ss_pred             ------------------ceeehhhhcccCCC---ccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhh
Confidence                              11122222221111   11112345689999999999999999999999999998887776 


Q ss_pred             ccCCCCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHH
Q psy6874         319 AVHIEPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKG  397 (504)
Q Consensus       319 ~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~  397 (504)
                      .+++.++|++++++|++|.+++.. ++.++..|+++.+............    .++.+.++++|++..+|..+..+...
T Consensus       212 ~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~----~~~~i~~~~~t~~~~~~~~~~l~~~~  287 (579)
T PRK09192        212 GLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQ----WLDLISRNRGTISYSPPFGYELCARR  287 (579)
T ss_pred             cccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHH----HHHHHHhcCcEEEeCCcHHHHHHHHh
Confidence            778999999999999999999885 5677889999877653222111111    13357889999777655544443321


Q ss_pred             HHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhC-----
Q psy6874         398 VHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLC-----  472 (504)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~-----  472 (504)
                      ....                                      .......+++|.+++||+++++++.+.+...+.     
T Consensus       288 ~~~~--------------------------------------~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~  329 (579)
T PRK09192        288 VNSK--------------------------------------DLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFD  329 (579)
T ss_pred             hccc--------------------------------------cccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCC
Confidence            1000                                      000011258999999999999999999887763     


Q ss_pred             -Cceeeeccccccccceeecc
Q psy6874         473 -EKVIQGYGLTETTSCATVMH  492 (504)
Q Consensus       473 -~~v~~~YG~TEt~~~~~~~~  492 (504)
                       ..+++.||+||+++.++..+
T Consensus       330 ~~~~~~~yG~TE~~~~~~~~~  350 (579)
T PRK09192        330 DKAFMPSYGLAEATLAVSFSP  350 (579)
T ss_pred             hhhcccccccccceeEEeccC
Confidence             35999999999987665543

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=2.3e-34  Score=362.33  Aligned_cols=303  Identities=21%  Similarity=0.237  Sum_probs=245.5

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..++.++|++.++.+|+++|+.+.                      + ..+||+||.++++++|+.|++.|+++|++|++
T Consensus      1130 ~~~l~~~~~~~a~~~p~~~Al~~~----------------------~-~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i 1186 (4334)
T PRK05691       1130 QAWLPELLNEQARQTPERIALVWD----------------------G-GSLDYAELHAQANRLAHYLRDKGVGPDVCVAI 1186 (4334)
T ss_pred             cCCHHHHHHHHHHhCCCCeEEEEC----------------------C-ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            457999999999999999999632                      1 46999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD  249 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~  249 (504)
                      +++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++.+....+..    .... ..+..+..     
T Consensus      1187 ~~~~s~~~iv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~----~~~~-~~~~~~~~----- 1256 (4334)
T PRK05691       1187 AAERSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQ----AEGV-SAIALDSL----- 1256 (4334)
T ss_pred             EeCCCHHHHHHHHHHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhccc----ccCc-eEEeeccc-----
Confidence            9999999999999999999999999999999999999999999999998865433211    1111 11111111     


Q ss_pred             ccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEE
Q psy6874         250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFL  329 (504)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l  329 (504)
                                      .......  ..+.....++++++++|||||||.||||+++|+++.+.+.+....+++.++|+++
T Consensus      1257 ----------------~~~~~~~--~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l 1318 (4334)
T PRK05691       1257 ----------------HLDSWPS--QAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLM 1318 (4334)
T ss_pred             ----------------cccccCC--CCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEE
Confidence                            0000000  1122234678999999999999999999999999999999888888999999999


Q ss_pred             EecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHH
Q psy6874         330 GYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFK  409 (504)
Q Consensus       330 ~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~  409 (504)
                      ++.|++|..++..++.+|+.|+++++.++....+....     ++.++++++|++.++|+++..+.+....         
T Consensus      1319 ~~~~~~fd~s~~~~~~~L~~G~~l~i~~~~~~~~~~~l-----~~~i~~~~vt~~~~~Ps~l~~l~~~~~~--------- 1384 (4334)
T PRK05691       1319 QKAPISFDVSVWECFWPLITGCRLVLAGPGEHRDPQRI-----AELVQQYGVTTLHFVPPLLQLFIDEPLA--------- 1384 (4334)
T ss_pred             EeCCccHHHHHHHHHHHHhCCCEEEEcCccccCCHHHH-----HHHHHHcCCeEEECcHHHHHHHHhCccc---------
Confidence            99999999998888999999999999876544443222     3358899999999999999888652100         


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeeccccccccce
Q psy6874         410 RALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTSCA  488 (504)
Q Consensus       410 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~~~  488 (504)
                                                        ...++||.+++||+++++++.+++...+ +++++|+||+||+++.+
T Consensus      1385 ----------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 1430 (4334)
T PRK05691       1385 ----------------------------------AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINV 1430 (4334)
T ss_pred             ----------------------------------ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeee
Confidence                                              0115899999999999999999998776 78999999999998766


Q ss_pred             eec
Q psy6874         489 TVM  491 (504)
Q Consensus       489 ~~~  491 (504)
                      +..
T Consensus      1431 ~~~ 1433 (4334)
T PRK05691       1431 THW 1433 (4334)
T ss_pred             eee
Confidence            543

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=4e-34  Score=296.63  Aligned_cols=256  Identities=19%  Similarity=0.199  Sum_probs=205.2

Q ss_pred             EeHHHHHHHHHHHHHHHHhCCC-CCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEc
Q psy6874         140 RSFNQVNDEAEAFGKGLRSLGQ-EPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITT  218 (504)
Q Consensus       140 ~Ty~el~~~~~~la~~L~~~Gv-~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~  218 (504)
                      +.|+||.++++++|++|++.|+ ++|++|+++++|++|++++++||+++|++++|+++.++++++.++++++++++++++
T Consensus        20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~   99 (452)
T PRK07445         20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL   99 (452)
T ss_pred             cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence            6899999999999999999988 579999999999999999999999999999999999999999999999999999987


Q ss_pred             CCchhHHHHHhhcCCCceEEEEEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCC
Q psy6874         219 HDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGT  298 (504)
Q Consensus       219 ~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~  298 (504)
                      .+.....               ....                              ........++++++++|||||||.
T Consensus       100 ~~~~~~~---------------~~~~------------------------------~~~~~~~~~~~~~~i~~TSGTTG~  134 (452)
T PRK07445        100 DQLKLSH---------------PPPL------------------------------PSQGILPNLETGWIMIPTGGSSGQ  134 (452)
T ss_pred             Ccccccc---------------CCCC------------------------------CccccCCCCCCcEEEEeCCCCCCC
Confidence            6532100               0000                              000011346899999999999999


Q ss_pred             cceEEecHHHHHHHHHhhhhccCCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccc
Q psy6874         299 PKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASV  378 (504)
Q Consensus       299 PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~  378 (504)
                      ||||++||.++.+.+......+.+.+ ++.++++|++|.+++...+.+++.|+++++.+........        .....
T Consensus       135 PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~--------~~~~~  205 (452)
T PRK07445        135 IRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQ--------ELPPN  205 (452)
T ss_pred             CcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchh--------hhhhh
Confidence            99999999999988887776666654 4678899999999998888999999999987633222211        11346


Q ss_pred             cCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCC
Q psy6874         379 LHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAP  458 (504)
Q Consensus       379 ~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~  458 (504)
                      +++|++.++|+++..+.+...                                            ...+++|.+++||++
T Consensus       206 ~~~t~~~~vP~~l~~l~~~~~--------------------------------------------~~l~~l~~i~~gG~~  241 (452)
T PRK07445        206 PSDFFLSLVPTQLQRLLQLRP--------------------------------------------QWLAQFRTILLGGAP  241 (452)
T ss_pred             cCceEEEehHHHHHHHHhhCh--------------------------------------------hhhhcceEEEECCcc
Confidence            789999999999998865100                                            001589999999999


Q ss_pred             CCHHHHHHHHHHhCCceeeeccccccccceeecccC
Q psy6874         459 LSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLN  494 (504)
Q Consensus       459 l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~~~~~~  494 (504)
                      +++++.+.++. +++++++.||+||+++.++...++
T Consensus       242 l~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~~~  276 (452)
T PRK07445        242 AWPSLLEQARQ-LQLRLAPTYGMTETASQIATLKPD  276 (452)
T ss_pred             CCHHHHHHHHh-cCCeEecCcchhhhcccccccCch
Confidence            99999998876 599999999999997655444433

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.8e-34  Score=305.28  Aligned_cols=317  Identities=20%  Similarity=0.280  Sum_probs=227.4

Q ss_pred             cHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEc
Q psy6874          92 TMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFA  171 (504)
Q Consensus        92 tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~  171 (504)
                      ++.++|++.+..+|+++|+.+.+-    + ..         ..+.++.+||+||.++++++|+.|.+.| .+||+|++++
T Consensus         2 s~~~~l~~~a~~~p~~~a~~~~~~----~-~~---------~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~   66 (578)
T PRK05850          2 SVPSLLRERASLQPDDAAFTFIDY----E-QD---------PAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILA   66 (578)
T ss_pred             cHHHHHHHHHhcCCCceEEEEEcc----C-CC---------CCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEc
Confidence            577899999999999999975320    0 00         0123468999999999999999999999 6899999999


Q ss_pred             CCCHHHHHHHHHHHhCCCeEEEecC---CCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCC--CceEEEEEcCCCC
Q psy6874         172 ETRAEWMIAAQACFKQNIPVVTIYA---TLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTP--RVSTLIYMEDQLT  246 (504)
Q Consensus       172 ~n~~e~~~~~lA~~~~G~~~v~i~~---~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~l~~ii~~~~~~~  246 (504)
                      +|+++|+++++||+++|++++|+++   .++.+++.++|+++++++++++++..+.+.+.....+  ....++.++..  
T Consensus        67 ~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  144 (578)
T PRK05850         67 PQGLEYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL--  144 (578)
T ss_pred             CCcccHHHHHHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc--
Confidence            9999999999999999999999997   4578999999999999999999876665544322111  11122222111  


Q ss_pred             cccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhcc-C----
Q psy6874         247 STDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV-H----  321 (504)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~-~----  321 (504)
                                       ++   ....  ........++++++|+|||||||.||||+++|.++.+++....... .    
T Consensus       145 -----------------~~---~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~  202 (578)
T PRK05850        145 -----------------DL---DSPR--GSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGG  202 (578)
T ss_pred             -----------------cc---ccCC--ccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhcccccc
Confidence                             00   0000  1111234568999999999999999999999999988776554322 2    


Q ss_pred             -CCCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHH-H
Q psy6874         322 -IEPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKG-V  398 (504)
Q Consensus       322 -~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~-~  398 (504)
                       ...+|++++++|++|.++++. .+.+++.|+++++.++.........+    +..+.+++++++ .+|.++..+... .
T Consensus       203 ~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~----~~~i~~~~~~~~-~~p~~~~~~~~~~~  277 (578)
T PRK05850        203 VPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARW----MQLLASNPHAFS-AAPNFAFELAVRKT  277 (578)
T ss_pred             CCCCcceEEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHH----HHHHHHcCCeEE-eCCcHHHHHHHHhc
Confidence             356899999999999999874 78899999999998754322111111    234778888855 566654433221 0


Q ss_pred             HHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhC------
Q psy6874         399 HEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLC------  472 (504)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~------  472 (504)
                      ...                                      .......+++|.+++||+++++++.+.+...|+      
T Consensus       278 ~~~--------------------------------------~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~  319 (578)
T PRK05850        278 SDD--------------------------------------DMAGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRE  319 (578)
T ss_pred             chh--------------------------------------hhcCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCc
Confidence            000                                      000111257999999999999999999988763      


Q ss_pred             Cceeeeccccccccceee
Q psy6874         473 EKVIQGYGLTETTSCATV  490 (504)
Q Consensus       473 ~~v~~~YG~TEt~~~~~~  490 (504)
                      .++++.||+||++..+..
T Consensus       320 ~~~~~~YG~tE~~~~~~~  337 (578)
T PRK05850        320 TAIRPSYGLAEATVYVAT  337 (578)
T ss_pred             ccccCccchhhhhhheec
Confidence            369999999998755443

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1e-33  Score=295.74  Aligned_cols=259  Identities=24%  Similarity=0.259  Sum_probs=208.7

Q ss_pred             eEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEE
Q psy6874         138 EWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVIT  217 (504)
Q Consensus       138 ~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~  217 (504)
                      +.+||+|+.++++++|..|+     ++|+|+++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++++
T Consensus        24 ~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~   98 (471)
T PRK07787         24 RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAERRHILADSGAQAWLG   98 (471)
T ss_pred             cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHHHHHHHHhcCCCEEEe
Confidence            67999999999999999996     4799999999999999999999999999999999999999999999999999999


Q ss_pred             cCCchhHHHHHhhcCCCceEEEEEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCC
Q psy6874         218 THDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTG  297 (504)
Q Consensus       218 ~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG  297 (504)
                      +.+...      ...+.+.   .....               ..             ........++|+++++|||||||
T Consensus        99 ~~~~~~------~~~~~~~---~~~~~---------------~~-------------~~~~~~~~~~~~a~i~~TSGTTG  141 (471)
T PRK07787         99 PAPDDP------AGLPHVP---VRLHA---------------RS-------------WHRYPEPDPDAPALIVYTSGTTG  141 (471)
T ss_pred             cCCccc------cccccee---eeccc---------------cc-------------cccCCCCCCCceEEEEECCCCCC
Confidence            864110      0111110   00000               00             00011235689999999999999


Q ss_pred             CcceEEecHHHHHHHHHhhhhccCCCCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccc
Q psy6874         298 TPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDA  376 (504)
Q Consensus       298 ~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i  376 (504)
                      .||||+++|.++...+......+.+.++|++++.+|++|.+++.. ++.++..|+++++.+.....+.        +..+
T Consensus       142 ~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~--------~~~i  213 (471)
T PRK07787        142 PPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAY--------AQAL  213 (471)
T ss_pred             CCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHH--------HHHH
Confidence            999999999999999888878888899999999999999999885 7789999999988765433222        3347


Q ss_pred             cccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEcc
Q psy6874         377 SVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGG  456 (504)
Q Consensus       377 ~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG  456 (504)
                      + +++|++.++|.++.++.+....                                          .....++|.+++||
T Consensus       214 ~-~~~t~~~~~P~~~~~l~~~~~~------------------------------------------~~~l~~l~~~~~gg  250 (471)
T PRK07787        214 S-EGGTLYFGVPTVWSRIAADPEA------------------------------------------ARALRGARLLVSGS  250 (471)
T ss_pred             h-hCceEEEcchHHHHHHHhCccc------------------------------------------cccccceeEEEECC
Confidence            7 8999999999999888752100                                          00115899999999


Q ss_pred             CCCCHHHHHHHHHHhCCceeeecccccccccee
Q psy6874         457 APLSPDTHELIKVCLCEKVIQGYGLTETTSCAT  489 (504)
Q Consensus       457 ~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~  489 (504)
                      +++++++.++++..++.++++.||+||++...+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~  283 (471)
T PRK07787        251 AALPVPVFDRLAALTGHRPVERYGMTETLITLS  283 (471)
T ss_pred             CCCCHHHHHHHHHHcCCCeecccCccccCccee
Confidence            999999999999989999999999999875443

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.8e-33  Score=316.17  Aligned_cols=312  Identities=16%  Similarity=0.180  Sum_probs=222.3

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..++.++|++.++++||++|+.+.                       .+.+||+||.++++++|++|+++|+++||+|+|
T Consensus       446 ~~sl~~ll~~~a~~~pd~~Al~~~-----------------------~~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI  502 (994)
T PRK07868        446 RISLGRIIAEQARDAPKGEFLLFD-----------------------GRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGV  502 (994)
T ss_pred             CccHHHHHHHHHHHCCCCeEEEeC-----------------------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            447999999999999999999532                       157999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD  249 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~  249 (504)
                      +++|+++|+++++||+++|++++|+|+.   +++.+++++++++++|++++..+.+.+.      ...++.++..... .
T Consensus       503 ~~~n~~e~v~a~lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~------~~~iiv~~~~~~~-~  572 (994)
T PRK07868        503 LMETRPSALVAIAALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL------PGRVLVLGGGESR-D  572 (994)
T ss_pred             EcCCCHHHHHHHHHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc------CceEEEecCCccc-c
Confidence            9999999999999999999999999984   6899999999999999987765544321      1345555432000 0


Q ss_pred             ccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEE
Q psy6874         250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFL  329 (504)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l  329 (504)
                       ...+.......++++..............+..++|+++|+|| ||||.||++.++|.+...........+.+.++|+++
T Consensus       573 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L  650 (994)
T PRK07868        573 -LDLPDDADVIDMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVY  650 (994)
T ss_pred             -ccCCcchhhhhhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEE
Confidence             000000111112221110000000001112246899999999 588888888888877665555555566888999999


Q ss_pred             EecChHHHHHHHHHHH-HHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChH
Q psy6874         330 GYLPLAHVFELLSESV-CLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPF  408 (504)
Q Consensus       330 ~~lPl~h~~~~~~~~~-~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~  408 (504)
                      +.+|++|++++...+. ++..|+++++.+..   +....     ++.++++++|++.++|+++..+.+....        
T Consensus       651 ~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~---~~~~~-----~~~I~~~~vT~~~~~Ps~l~~L~~~~~~--------  714 (994)
T PRK07868        651 CLTPLHHESGLLVSLGGAVVGGSRIALSRGL---DPDRF-----VQEVRQYGVTVVSYTWAMLREVVDDPAF--------  714 (994)
T ss_pred             EecChHHHhHHHHHHHHHhccceEEEecCCC---CHHHH-----HHHHHHhCCcEEEeHHHHHHHHHhCcCC--------
Confidence            9999999999986554 45555555554432   22111     3468999999999999999888652100        


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhC-Cceeeeccccccccc
Q psy6874         409 KRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLC-EKVIQGYGLTETTSC  487 (504)
Q Consensus       409 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~-~~v~~~YG~TEt~~~  487 (504)
                                                       .....+++|.++  |+++++++.+.+++.|+ ++++++||+||++..
T Consensus       715 ---------------------------------~~~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~  759 (994)
T PRK07868        715 ---------------------------------VLHGNHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAV  759 (994)
T ss_pred             ---------------------------------ccCCCCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeeccccccc
Confidence                                             000115799876  34599999999998886 899999999998653

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2.7e-33  Score=295.55  Aligned_cols=310  Identities=18%  Similarity=0.190  Sum_probs=226.6

Q ss_pred             eEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEE
Q psy6874         138 EWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVIT  217 (504)
Q Consensus       138 ~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~  217 (504)
                      +.+||.|+.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++++++.++.+++.++++.++++++++
T Consensus        10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~   89 (509)
T PRK12406         10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA   89 (509)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCchhHHHHHhhcCCCceEEEEEcCCCCc-----ccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEec
Q psy6874         218 THDLLPKFRNILKLTPRVSTLIYMEDQLTS-----TDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYT  292 (504)
Q Consensus       218 ~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yT  292 (504)
                      +.+..+.+.+..   +....++........     .+............+++......      ......++++++++||
T Consensus        90 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~a~i~~T  160 (509)
T PRK12406         90 HADLLHGLASAL---PAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE------PYDGPPVPQPQSMIYT  160 (509)
T ss_pred             ccchhhhhhhhh---hcccceeecccccccccccccccccccCCCCccCHHHHhcccC------ccCCCCCCCceEEEEC
Confidence            887655443322   211122222111000     00000001112345555543221      1123356899999999


Q ss_pred             CCCCCCcceEEecHHH---HHHHHHhhhhccCCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhc
Q psy6874         293 SGSTGTPKGVVLTHDN---MISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIK  369 (504)
Q Consensus       293 SGTTG~PKgV~~th~~---l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~  369 (504)
                      |||||.||+|+++|.+   +..........+++.++|+++..+|++|..+....+.++..|+++++.+.....+.     
T Consensus       161 SGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----  235 (509)
T PRK12406        161 SGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEEL-----  235 (509)
T ss_pred             CCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHH-----
Confidence            9999999999987655   33333344456688999999999999999887776677889999988764322221     


Q ss_pred             cCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcE
Q psy6874         370 RGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRV  449 (504)
Q Consensus       370 ~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  449 (504)
                         +..+++++||++.++|.++..+.+.....                                       .+....+++
T Consensus       236 ---~~~l~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------------------~~~~~~~~l  273 (509)
T PRK12406        236 ---LQLIERHRITHMHMVPTMFIRLLKLPEEV---------------------------------------RAKYDVSSL  273 (509)
T ss_pred             ---HHHHHHcCCeEEEccHHHHHHHHhCchhh---------------------------------------cccCCCCce
Confidence               34588999999999999998886521100                                       001112689


Q ss_pred             EEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccceeecccCCCCCccCCC
Q psy6874         450 RLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNG  503 (504)
Q Consensus       450 r~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~~~~~~d~~~~~s~G  503 (504)
                      |.+++||+++++++.+++++.++++++++||+||++++++....+....++++|
T Consensus       274 ~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G  327 (509)
T PRK12406        274 RHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVG  327 (509)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcC
Confidence            999999999999999999998999999999999998755544332223344555

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=4.5e-33  Score=285.33  Aligned_cols=276  Identities=23%  Similarity=0.339  Sum_probs=221.6

Q ss_pred             eHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcC
Q psy6874         141 SFNQVNDEAEAFGKGLRS-LGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTH  219 (504)
Q Consensus       141 Ty~el~~~~~~la~~L~~-~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~  219 (504)
                      ||.|+.+.++++++.|.+ .|+++||+|+++++|+++++++++||++.|++++|++++++.+++.++++.+++++++++.
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999998 8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CchhHHHHHhhcCCCceEEEEEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCc
Q psy6874         220 DLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTP  299 (504)
Q Consensus       220 ~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~P  299 (504)
                      +....+...    +  ..++..+..                 +..........  .........+++++++|||||||.|
T Consensus        81 ~~~~~~~~~----~--~~~~~~~~~-----------------~~~~~~~~~~~--~~~~~~~~~~~~~~i~~TSGTtG~p  135 (408)
T TIGR01733        81 ALASRLAGL----V--LPIILVDPL-----------------ELAALDDAPAP--PPPDAPSGPDDLAYVIYTSGSTGRP  135 (408)
T ss_pred             chhhhcccc----C--CceEEechh-----------------hhhhccccccc--ccccCCCCCCCcEEEEEcCCCCCCC
Confidence            765433221    1  011111110                 00000000000  1111124578999999999999999


Q ss_pred             ceEEecHHHHHHHHHhhhhccCCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCccccccc
Q psy6874         300 KGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVL  379 (504)
Q Consensus       300 KgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~  379 (504)
                      |+|.+||.++..........+.+.++|++++.+|++|.+++...+.++..|+++++.+...... ...+    ...++++
T Consensus       136 K~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~-~~~~----~~~~~~~  210 (408)
T TIGR01733       136 KGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERD-AALL----AALIAEH  210 (408)
T ss_pred             CEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccC-HHHH----HHHHHHc
Confidence            9999999999999998888888899999999999999999988999999999999887655421 1111    2246788


Q ss_pred             CCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCC
Q psy6874         380 HPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPL  459 (504)
Q Consensus       380 ~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l  459 (504)
                      ++|.+.++|.+++.+.+...                                            ...+++|.+++||+++
T Consensus       211 ~~t~l~~~p~~~~~l~~~~~--------------------------------------------~~~~~l~~v~~~g~~~  246 (408)
T TIGR01733       211 PVTVLNLTPSLLALLAAALP--------------------------------------------PALASLRLVILGGEAL  246 (408)
T ss_pred             CceEEEeCHHHHHHHHHhhh--------------------------------------------hcccCceEEEEeCccC
Confidence            89999999999999877421                                            1126899999999999


Q ss_pred             CHHHHHHHHHHhC-Cceeeeccccccccceee
Q psy6874         460 SPDTHELIKVCLC-EKVIQGYGLTETTSCATV  490 (504)
Q Consensus       460 ~~~~~~~~~~~~~-~~v~~~YG~TEt~~~~~~  490 (504)
                      ++++.+++++.++ ++++++||+||+++.++.
T Consensus       247 ~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~  278 (408)
T TIGR01733       247 TPALVDRWRARGPGARLINLYGPTETTVWSTA  278 (408)
T ss_pred             CHHHHHHHHHhCCCcEEEecccCCceEEEEEE
Confidence            9999999999887 899999999999876653

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.8e-33  Score=294.96  Aligned_cols=302  Identities=17%  Similarity=0.197  Sum_probs=228.6

Q ss_pred             eEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEE
Q psy6874         138 EWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVIT  217 (504)
Q Consensus       138 ~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~  217 (504)
                      +.+||.|+.+++++++++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++++
T Consensus        10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~   89 (502)
T PRK08276         10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV   89 (502)
T ss_pred             cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCchhHHHHHhhcCC-CceEEEEEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCC
Q psy6874         218 THDLLPKFRNILKLTP-RVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGST  296 (504)
Q Consensus       218 ~~~~~~~~~~~~~~~~-~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTT  296 (504)
                      ++...+.+.++....+ ..+.++..+..           ......|++......      .......+++++++||||||
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~------~~~~~~~~~~a~i~~TSGtT  152 (502)
T PRK08276         90 SAALADTAAELAAELPAGVPLLLVVAGP-----------VPGFRSYEEALAAQP------DTPIADETAGADMLYSSGTT  152 (502)
T ss_pred             ccchhhHHHHHhhhccccccEEEEeCCC-----------CCccccHHHHHhcCC------CCCCCCCCcceEEEECCCCC
Confidence            9887666655544444 44555544221           011233444432211      11123557789999999999


Q ss_pred             CCcceEEecHHHHHHHH------HhhhhccCCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhcc
Q psy6874         297 GTPKGVVLTHDNMISTL------KAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKR  370 (504)
Q Consensus       297 G~PKgV~~th~~l~~~~------~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~  370 (504)
                      |.||+|.++|.++....      ...........++++++.+|++|.+++...+.++..|+++.+.+.......      
T Consensus       153 G~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------  226 (502)
T PRK08276        153 GRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEA------  226 (502)
T ss_pred             CCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHH------
Confidence            99999999987754322      112222233578999999999999998887789999999988765332222      


Q ss_pred             CCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEE
Q psy6874         371 GTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVR  450 (504)
Q Consensus       371 ~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr  450 (504)
                        ++.++++++|++.++|.++..+.+......                                       .....+++|
T Consensus       227 --~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------------------~~~~~~~lr  265 (502)
T PRK08276        227 --LALIERYRVTHSQLVPTMFVRMLKLPEEVR---------------------------------------ARYDVSSLR  265 (502)
T ss_pred             --HHHHHHhCCeEEEehHHHHHHHHhCccccC---------------------------------------CCCCcccce
Confidence              345889999999999999988865311000                                       001126899


Q ss_pred             EEEEccCCCCHHHHHHHHHHhCCceeeeccccccccceeecccCCCCCccCCC
Q psy6874         451 LILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNG  503 (504)
Q Consensus       451 ~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~~~~~~d~~~~~s~G  503 (504)
                      .+++||+++++++.+++++.+|.++++.||+||+++.++..........+++|
T Consensus       266 ~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G  318 (502)
T PRK08276        266 VAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVG  318 (502)
T ss_pred             EEEecCCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcc
Confidence            99999999999999999998999999999999998755544332223344555

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.9e-33  Score=297.83  Aligned_cols=310  Identities=18%  Similarity=0.267  Sum_probs=232.8

Q ss_pred             CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Q psy6874          91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIF  170 (504)
Q Consensus        91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~  170 (504)
                      .++.+.+...++..|+..++...                     +..+.+||.||+++++++|++|.+.|+++||+|+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~   60 (545)
T PRK07768          2 SRFTEKMYANARTSPRGMVTGEP---------------------DAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVL   60 (545)
T ss_pred             chHHHHHHHHhhCCCcceEEecC---------------------CCceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            45778788888899999888532                     223679999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHH-------HHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcC
Q psy6874         171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAI-------AHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMED  243 (504)
Q Consensus       171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~  243 (504)
                      ++|+++|+++++||+++|++++++++..+.+++       .++++.++++.++++++....+.....             
T Consensus        61 ~~~~~~~~~~~la~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------------  127 (545)
T PRK07768         61 AGAPVEIAPTAQGLWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEE-------------  127 (545)
T ss_pred             CCCchHHHHHHHHHHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcc-------------
Confidence            999999999999999999999999998876554       456777899999998764432221100             


Q ss_pred             CCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCC
Q psy6874         244 QLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIE  323 (504)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~  323 (504)
                                 .+..+..++++.....     .......++++++|+|||||||.||||+++|+++...+.......++.
T Consensus       128 -----------~~~~~~~~~~l~~~~~-----~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~  191 (545)
T PRK07768        128 -----------KGIRVLTVADLLAADP-----IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFD  191 (545)
T ss_pred             -----------cCCceeehhhhcccCC-----CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCC
Confidence                       0122345555543211     122244679999999999999999999999999999888877777887


Q ss_pred             CC-cEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHH
Q psy6874         324 PN-DVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEK  401 (504)
Q Consensus       324 ~~-d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~  401 (504)
                      ++ |++++.+|++|.+++.. .+.++..|+++++.++.........+    ...++++++|++..+|.++..+.+.+...
T Consensus       192 ~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~l~~~~~~~  267 (545)
T PRK07768        192 VETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLW----AELISKYRGTMTAAPNFAYALLARRLRRQ  267 (545)
T ss_pred             CCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHH----HHHHHHhCCEEEECchHHHHHHHHHHhcc
Confidence            76 99999999999999885 55789999999887654332221111    22478999999888777776654432111


Q ss_pred             HhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHH---hCC---ce
Q psy6874         402 VSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVC---LCE---KV  475 (504)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~---~~~---~v  475 (504)
                      ...                                     ....++++|.+++||+++++++.+++...   +|.   ++
T Consensus       268 ~~~-------------------------------------~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~  310 (545)
T PRK07768        268 AKP-------------------------------------GAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAI  310 (545)
T ss_pred             ccc-------------------------------------cCCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccc
Confidence            000                                     00112589999999999999999988764   555   49


Q ss_pred             eeeccccccccceeec
Q psy6874         476 IQGYGLTETTSCATVM  491 (504)
Q Consensus       476 ~~~YG~TEt~~~~~~~  491 (504)
                      ++.||+||++..++..
T Consensus       311 ~~~yG~tE~~~~~~~~  326 (545)
T PRK07768        311 LPAYGMAEATLAVSFS  326 (545)
T ss_pred             cccccccccceEEEcc
Confidence            9999999997655443

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=3.1e-33  Score=289.21  Aligned_cols=263  Identities=21%  Similarity=0.277  Sum_probs=215.5

Q ss_pred             eHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCC
Q psy6874         141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHD  220 (504)
Q Consensus       141 Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~  220 (504)
                      ||+|+.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++.+++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             chhHHHHHhhcCCCceEEEEEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcc
Q psy6874         221 LLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPK  300 (504)
Q Consensus       221 ~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PK  300 (504)
                      .....         . .                     ...+.++.......  .........+++++++|||||||.||
T Consensus        81 ~~~~~---------~-~---------------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~TSGtTG~PK  127 (436)
T TIGR01923        81 LEEKD---------F-Q---------------------ADSLDRIEAAGRYE--TSLSASFNMDQIATLMFTSGTTGKPK  127 (436)
T ss_pred             ccccc---------e-e---------------------ecchHhhhhccccc--ccccccCCcCceEEEEeCCCCCCCCc
Confidence            32110         0 0                     00011111111100  11122345688999999999999999


Q ss_pred             eEEecHHHHHHHHHhhhhccCCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccC
Q psy6874         301 GVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLH  380 (504)
Q Consensus       301 gV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~  380 (504)
                      +|.++|.++...+......+++.++|+++..+|++|++++...+.++..|+++++.++..  ..        ++.+++++
T Consensus       128 ~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~--~~--------~~~l~~~~  197 (436)
T TIGR01923       128 AVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFN--QL--------LEMIANER  197 (436)
T ss_pred             EEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchHH--HH--------HHHHHHhC
Confidence            999999999999988888889999999999999999999988889999999999986643  11        33588999


Q ss_pred             CcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCC
Q psy6874         381 PTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLS  460 (504)
Q Consensus       381 ~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~  460 (504)
                      +|++.++|.++.++.+....                                             ..++|.+++||++++
T Consensus       198 ~t~~~~~P~~l~~l~~~~~~---------------------------------------------~~~l~~~~~~G~~~~  232 (436)
T TIGR01923       198 VTHISLVPTQLNRLLDEGGH---------------------------------------------NENLRKILLGGSAIP  232 (436)
T ss_pred             CeEEEeHHHHHHHHHhCcCC---------------------------------------------CCceEEEEECCCCCC
Confidence            99999999999888652100                                             047999999999999


Q ss_pred             HHHHHHHHHHhCCceeeeccccccccceeecc
Q psy6874         461 PDTHELIKVCLCEKVIQGYGLTETTSCATVMH  492 (504)
Q Consensus       461 ~~~~~~~~~~~~~~v~~~YG~TEt~~~~~~~~  492 (504)
                      +++.++++. .++++++.||+||+++..+...
T Consensus       233 ~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~  263 (436)
T TIGR01923       233 APLIEEAQQ-YGLPIYLSYGMTETCSQVTTAT  263 (436)
T ss_pred             HHHHHHHHH-hCCceeeEecCCccchhccCcC
Confidence            999998876 5999999999999977555443

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-32  Score=283.28  Aligned_cols=244  Identities=14%  Similarity=0.153  Sum_probs=206.3

Q ss_pred             eEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEE
Q psy6874         138 EWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVIT  217 (504)
Q Consensus       138 ~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~  217 (504)
                      +.+||+|+.++++++|+.|. .|+++|++|+++++|+++++++++||+++|++++|+++..+.+++..++++++++++++
T Consensus         7 ~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~   85 (414)
T PRK08308          7 EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY   85 (414)
T ss_pred             ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence            57999999999999999985 78999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCchhHHHHHhhcCCCceEEEEEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCC
Q psy6874         218 THDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTG  297 (504)
Q Consensus       218 ~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG  297 (504)
                      ++....                 ...                                  .....++++++++|||||||
T Consensus        86 ~~~~~~-----------------~~~----------------------------------~~~~~~~~~~~i~~TSGtTG  114 (414)
T PRK08308         86 GESDFT-----------------KLE----------------------------------AVNYLAEEPSLLQYSSGTTG  114 (414)
T ss_pred             cCcccc-----------------ccc----------------------------------CCCCCCCCceEEEECCCCCC
Confidence            763100                 000                                  00134578999999999999


Q ss_pred             CcceEEecHHHHHHHHHhhhhccCCCCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccc
Q psy6874         298 TPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDA  376 (504)
Q Consensus       298 ~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i  376 (504)
                      .||||+++|+|+.+++......+....+|+.+..+|++|.+++.. .+.++..|+++++.+.......        ++.+
T Consensus       115 ~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~--------~~~l  186 (414)
T PRK08308        115 EPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFA--------LNIL  186 (414)
T ss_pred             CCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHH--------HHHH
Confidence            999999999999998888877788889999999999999999864 7789999999998765432221        3358


Q ss_pred             cccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEcc
Q psy6874         377 SVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGG  456 (504)
Q Consensus       377 ~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG  456 (504)
                      +++++|++.++|.++..+.+....                                             ..++|.+++||
T Consensus       187 ~~~~~t~~~~~P~~~~~l~~~~~~---------------------------------------------~~~l~~~~~~G  221 (414)
T PRK08308        187 RNTPQHILYAVPLMLHILGRLLPG---------------------------------------------TFQFHAVMTSG  221 (414)
T ss_pred             HHhCCeEEEcCHHHHHHHHhcCCc---------------------------------------------cccccEEEEcc
Confidence            899999999999999888652100                                             02688899999


Q ss_pred             CCCCHHHHHHHHHHhCCceeeeccccccccc
Q psy6874         457 APLSPDTHELIKVCLCEKVIQGYGLTETTSC  487 (504)
Q Consensus       457 ~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~  487 (504)
                      +++++++.+.++.. +.++++.||+||+++.
T Consensus       222 ~~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~  251 (414)
T PRK08308        222 TPLPEAWFYKLRER-TTYMMQQYGCSEAGCV  251 (414)
T ss_pred             CCCCHHHHHHHHHh-CChhhhccCccccCCe
Confidence            99999999999876 6789999999999753

>KOG1175|consensus

Probab=100.00  E-value=1.6e-32  Score=281.45  Aligned_cols=331  Identities=20%  Similarity=0.214  Sum_probs=251.6

Q ss_pred             HHHHHHHHh-CCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC
Q psy6874          95 KVLRYVVTR-FSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAET  173 (504)
Q Consensus        95 ~~~~~~~~~-~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n  173 (504)
                      ..+.+..+. .++.+++.++.                 ...++...+||.|+.+++.++|..|...|+++||+|++++|+
T Consensus        68 n~~~~~~~~~~~~~~a~~~~~-----------------~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm  130 (626)
T KOG1175|consen   68 NCLDRHIKEKGGDKVAIIFEG-----------------NEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPM  130 (626)
T ss_pred             hhhhhhhhhcCCCCcEEEEEe-----------------cCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccC
Confidence            333444333 58888887653                 122333448999999999999999998999999999999999


Q ss_pred             CHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchh---------HHHHHhhcCCC-----ceEEE
Q psy6874         174 RAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLP---------KFRNILKLTPR-----VSTLI  239 (504)
Q Consensus       174 ~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~-----l~~ii  239 (504)
                      .+|++++++||.++|++.+++...++++++...++.++++++++.+....         .+.++....+.     .+.++
T Consensus       131 ~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~  210 (626)
T KOG1175|consen  131 IPEAVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLI  210 (626)
T ss_pred             ChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeE
Confidence            99999999999999999999999999999999999999999999865332         22222222221     11112


Q ss_pred             EEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHH-HHHHHHhhhh
Q psy6874         240 YMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDN-MISTLKAFSD  318 (504)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~-l~~~~~~~~~  318 (504)
                      +.+..             ....|++++.....   ..++.+.+.+|+.+|+|||||||.|||+.+++.. ++..+.....
T Consensus       211 ~~~~~-------------~d~~~~~~~~~a~~---~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~  274 (626)
T KOG1175|consen  211 VSRRN-------------RDLFWSLELKKASP---EHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRY  274 (626)
T ss_pred             Eeccc-------------ccccHHHHhhhcCC---CCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcce
Confidence            21111             24456666555443   3446778889999999999999999998888775 5666666667


Q ss_pred             ccCCCCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHH
Q psy6874         319 AVHIEPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKG  397 (504)
Q Consensus       319 ~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~  397 (504)
                      .+++.++|++.++.-+.++.+.+. .+.+|++|+++++...... +...     .+..+.++++|+++..|+.++.+.+.
T Consensus       275 ~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~-~~~~-----~~~~v~k~~it~l~t~pt~~r~l~~~  348 (626)
T KOG1175|consen  275 HFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPF-DPGR-----IWKILDKYKVTVLYTAPTAYRLLRRL  348 (626)
T ss_pred             eccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCC-Chhh-----hhhhHhhcceEEEEeccHHHHHHHHh
Confidence            789999999999999999999886 5679999999999855443 3222     24468899999999999999988664


Q ss_pred             HHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCC-cee
Q psy6874         398 VHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCE-KVI  476 (504)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~  476 (504)
                      ..+.....                               .|        .+||.+.+.|+|++++.++++.++++. +|+
T Consensus       349 ~~~~~~~~-------------------------------~~--------~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~  389 (626)
T KOG1175|consen  349 GQEDVTSY-------------------------------SL--------KSLRTCGSVGEPINPEAWEWWKRVTGLDPIY  389 (626)
T ss_pred             cccccccc-------------------------------cc--------ceEEEEeecCccCCcchHHHHHHhcCccchh
Confidence            32222111                               01        379999999999999999999999987 699


Q ss_pred             eeccccccccceeecccCC-CCCccCCC
Q psy6874         477 QGYGLTETTSCATVMHLND-MGNINSNG  503 (504)
Q Consensus       477 ~~YG~TEt~~~~~~~~~~d-~~~~~s~G  503 (504)
                      +.||+||+++.++..-+.. ..++++.|
T Consensus       390 e~~~qtEtG~~~i~~~~g~~p~~pg~~~  417 (626)
T KOG1175|consen  390 ETYGQTETGGICITPKPGKLPIKPGSAG  417 (626)
T ss_pred             hceeeeccCceeeeccCCCCCcCccccC
Confidence            9999999998877665554 45555544

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=9.3e-32  Score=282.90  Aligned_cols=282  Identities=16%  Similarity=0.133  Sum_probs=194.7

Q ss_pred             cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCc------hhHHHHHhhcCCCceEEEEEcCC
Q psy6874         171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDL------LPKFRNILKLTPRVSTLIYMEDQ  244 (504)
Q Consensus       171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~------~~~~~~~~~~~~~l~~ii~~~~~  244 (504)
                      ++|++|++++++||+++|++++|+|+.++.+++.++|++++++++|+++..      .+.+.++....+ .+.++.....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~   79 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAP-AKAIVLPAAG   79 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhccc-ceEEEEeccC
Confidence            589999999999999999999999999999999999999999999998642      122222222222 2333332211


Q ss_pred             CCcccccccCCCceeeehhHHHhcccccC----CCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhcc
Q psy6874         245 LTSTDTTNFKQGIEIVPFKQIVKRGSESG----SRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV  320 (504)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~  320 (504)
                      . ...   .+.......|+++.+......    .........++|+++|+|||||||.||||++||.|++.+.......+
T Consensus        80 ~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~  155 (499)
T PLN03051         80 E-PVA---VPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHM  155 (499)
T ss_pred             c-ccC---CccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhc
Confidence            0 000   000011235666653221100    01111123568999999999999999999999999887766555566


Q ss_pred             CCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHH
Q psy6874         321 HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHE  400 (504)
Q Consensus       321 ~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~  400 (504)
                      ++.++|++++.+|++|++++...+.+++.|+++++.+...  +...     .++.+++++||++.++|+++..+.+....
T Consensus       156 ~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~--~~~~-----~~~~i~~~~vt~~~~vP~~~~~l~~~~~~  228 (499)
T PLN03051        156 DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAP--LGRG-----FGKFVQDAGVTVLGLVPSIVKAWRHTGAF  228 (499)
T ss_pred             CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCC--CcHH-----HHHHHHHhCCcEEEeCHHHHHHHHhcCcc
Confidence            8889999999999999999877778999999998875321  1111     24468999999999999999988652100


Q ss_pred             HHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh--CCceeee
Q psy6874         401 KVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL--CEKVIQG  478 (504)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~--~~~v~~~  478 (504)
                      ..                                       .....++||.+++||+++++++.++++..+  +++++++
T Consensus       229 ~~---------------------------------------~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~  269 (499)
T PLN03051        229 AM---------------------------------------EGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEY  269 (499)
T ss_pred             cc---------------------------------------ccCCchhheEEEecCCCCCHHHHHHHHHhccccceeEee
Confidence            00                                       001115899999999999999998887643  4889999


Q ss_pred             ccccccccceeecccCCCCCccCCC
Q psy6874         479 YGLTETTSCATVMHLNDMGNINSNG  503 (504)
Q Consensus       479 YG~TEt~~~~~~~~~~d~~~~~s~G  503 (504)
                      ||+||+++..+.....+....+++|
T Consensus       270 YG~TE~~~~~~~~~~~~~~~~~~~G  294 (499)
T PLN03051        270 CGGTELASGYISSTLLQPQAPGAFS  294 (499)
T ss_pred             eccccccceeecccccCCCCCcccc
Confidence            9999986544333222223344555

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.94  E-value=5.7e-25  Score=238.71  Aligned_cols=306  Identities=22%  Similarity=0.243  Sum_probs=240.2

Q ss_pred             CCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeE
Q psy6874          88 DGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNV  167 (504)
Q Consensus        88 ~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V  167 (504)
                      +...++.+.|.+.+.+.|++.|+..                      + ...+||+|+..+++++|+.|.+.|+.+++.|
T Consensus       224 ~~~~~i~~~f~~~a~~~p~~~a~~~----------------------~-~~~lty~el~~~a~~la~~l~~~g~~~~~~V  280 (642)
T COG1020         224 PLRLTIHLLFEEQAATTPDAVALVR----------------------G-GQQLTYAELDARANRLARLLISLGVGPGETV  280 (642)
T ss_pred             CccchHHHHHHHHHHhCCCceeEec----------------------C-CCcccHHHHHHHHHHHHHHHHHcCCCCCCeE
Confidence            3456899999999999999988852                      1 2579999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCc
Q psy6874         168 VIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTS  247 (504)
Q Consensus       168 ai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~  247 (504)
                      +++.+++++++++++|+.+.|+.++|+++..+.+.+.+++++++++.+++..+.....    ...+.    +..+..   
T Consensus       281 ~i~~~rs~~~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~---  349 (642)
T COG1020         281 AILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDD----VGLPG----LALDDA---  349 (642)
T ss_pred             EEEcCCCHHHHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEecccccccc----ccCCc----cccccc---
Confidence            9999999999999999999999999999999999999999999999999984432210    00111    111111   


Q ss_pred             ccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcE
Q psy6874         248 TDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDV  327 (504)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~  327 (504)
                                        ... ... .........+++.++++|||||||.||||+.+|.++.+........+.+..+|+
T Consensus       350 ------------------~~~-~~~-~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~  409 (642)
T COG1020         350 ------------------LSE-IPD-TDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDR  409 (642)
T ss_pred             ------------------ccc-CCc-cCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccE
Confidence                              000 000 011112345689999999999999999999999999998888877889999999


Q ss_pred             EEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccCh
Q psy6874         328 FLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASP  407 (504)
Q Consensus       328 ~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~  407 (504)
                      ++...++.+.......+.++..|+++++.......+.....     +.+.++++|++..+|.++..+.......  ..  
T Consensus       410 ~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~-----~~~~~~~vt~~~~~p~~~~~~~~~~~~~--~~--  480 (642)
T COG1020         410 VLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAALL-----ELLEAQGITVLLLVPLLLRLLLLAALAP--DL--  480 (642)
T ss_pred             EeecCCcccchhHHHHHHHHhCCCEEEecCccccCCHHHHH-----HHHHHcCCEEEEecHHHHHHHHhchhhc--cc--
Confidence            99999998888888899999999999998877666654432     2467899999999999998887631000  00  


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh--CCceeeeccccccc
Q psy6874         408 FKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL--CEKVIQGYGLTETT  485 (504)
Q Consensus       408 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~--~~~v~~~YG~TEt~  485 (504)
                                                         ....+.+|.+++||++++.++...+....  ...+.+.||.||+.
T Consensus       481 -----------------------------------~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~  525 (642)
T COG1020         481 -----------------------------------ISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEAT  525 (642)
T ss_pred             -----------------------------------cCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHh
Confidence                                               00003599999999999999999887655  46899999999976


Q ss_pred             cceeec
Q psy6874         486 SCATVM  491 (504)
Q Consensus       486 ~~~~~~  491 (504)
                      ...+..
T Consensus       526 ~~~~~~  531 (642)
T COG1020         526 LDAPSF  531 (642)
T ss_pred             hheeeE
Confidence            655544

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.93  E-value=6e-25  Score=205.50  Aligned_cols=223  Identities=15%  Similarity=0.128  Sum_probs=157.6

Q ss_pred             HHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHh-CCCCCCCeEEEEcCCCH
Q psy6874          97 LRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRS-LGQEPRHNVVIFAETRA  175 (504)
Q Consensus        97 ~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gv~~gd~Vai~~~n~~  175 (504)
                      +.+.++.+|+++|+.+.+          +       ..++.+.+||+|+.++++++|+.|++ +|+++||+|+|+++|++
T Consensus         2 ~~~~~~~~p~~~al~~~~----------~-------~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~   64 (227)
T TIGR03089         2 LSPLLAADPASPRLTFYD----------D-------ATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHW   64 (227)
T ss_pred             hhhhhhhCCCCcEEEEEc----------C-------CCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCH
Confidence            456778899999996321          0       00123579999999999999999998 79999999999999999


Q ss_pred             HHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCC-CCcccccccC
Q psy6874         176 EWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQ-LTSTDTTNFK  254 (504)
Q Consensus       176 e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~-~~~~~~~~~~  254 (504)
                      +++++++||+++|++++|+|             +++++++|++++..+.+.     .+  +.++.+... .........+
T Consensus        65 ~~~~~~~a~~~~G~v~vp~n-------------~s~a~~~v~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~  124 (227)
T TIGR03089        65 QTAVWLLAAWSTGVEVVLAG-------------DPDADVVVTGPDRLAAAA-----GS--GEVVALSLDPLGRRVAGELP  124 (227)
T ss_pred             HHHHHHHHHHHcCCEEEeCC-------------CCCCCEEEeCcchhhhcc-----cC--CceEEEeccccccCCCCCCC
Confidence            99999999999999999995             789999999988766532     12  233333210 0000000011


Q ss_pred             CCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEEecCh
Q psy6874         255 QGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPL  334 (504)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl  334 (504)
                      .  ...+|.+..+.....  ..+.....++|+++|+||||+         +|.|++.+.    ...++.++|+++ .+|+
T Consensus       125 ~--~~~~~~~~~~~~~~~--~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl  186 (227)
T TIGR03089       125 P--GVIDFAPEVRVHGDQ--FAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAW  186 (227)
T ss_pred             C--cccchhhhhhccCCC--CCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCC
Confidence            1  224566655432221  111113456899999999986         666665554    456788999999 9999


Q ss_pred             HHHHHHH-HHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCc
Q psy6874         335 AHVFELL-SESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPT  382 (504)
Q Consensus       335 ~h~~~~~-~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T  382 (504)
                      +|++|+. .++.+++.|+++++.+.+.....        ++.++++|+|
T Consensus       187 ~H~~gl~~~~~~~l~~G~t~v~~~rFd~~~~--------l~~i~~~~vT  227 (227)
T TIGR03089       187 TDLEDFLATLLAPLAAGGSLVLVTHPDPARL--------DQIAETERVT  227 (227)
T ss_pred             CchHHHHHHHHHHhccCceEEEecCCCHHHH--------HHHHHhhcCC
Confidence            9999997 48899999999999854433222        3347778876

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.83  E-value=8.2e-20  Score=184.34  Aligned_cols=150  Identities=21%  Similarity=0.228  Sum_probs=115.0

Q ss_pred             CCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCC--CCcEEEEecChHHHHHHH-HHHHHHHhCCeEEEcCccc
Q psy6874         284 KDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIE--PNDVFLGYLPLAHVFELL-SESVCLLCGVAIGYSTPLT  360 (504)
Q Consensus       284 ~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~--~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~  360 (504)
                      ++.++++|||||||.||||+++|+++++.+..+...+++.  +.|++++++|++|++++. ..+.++..|+++++.....
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~  174 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP  174 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence            4578999999999999999999999999888777766664  346899999999999976 4678889999998875433


Q ss_pred             cccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHH
Q psy6874         361 MIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQ  440 (504)
Q Consensus       361 ~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~  440 (504)
                      ....        ++.++.  .|+++++|.+++.+.+..    .                                     
T Consensus       175 ~~~~--------l~~i~~--~t~~~~~P~~l~~l~~~~----~-------------------------------------  203 (386)
T TIGR02372       175 ASGI--------MRHARP--GDLIVGTPFIWEQLADLD----Y-------------------------------------  203 (386)
T ss_pred             hHHH--------HHhhcc--CCEEEECcHHHHHHHhhC----c-------------------------------------
Confidence            2221        112322  289999999998886520    0                                     


Q ss_pred             HHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCC-ceeeeccccccccceee
Q psy6874         441 TKKLLGGRVRLILSGGAPLSPDTHELIKVCLCE-KVIQGYGLTETTSCATV  490 (504)
Q Consensus       441 ~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~~YG~TEt~~~~~~  490 (504)
                          ..+++|. ++||+++++++.+.++.. +. +++++||+||+++.+..
T Consensus       204 ----~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~  248 (386)
T TIGR02372       204 ----RLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLR  248 (386)
T ss_pred             ----CCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccc
Confidence                0135775 678999999999999875 54 69999999999875544

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.78  E-value=2.3e-18  Score=173.45  Aligned_cols=159  Identities=23%  Similarity=0.303  Sum_probs=118.5

Q ss_pred             CCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCcc
Q psy6874         280 PPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPL  359 (504)
Q Consensus       280 ~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~  359 (504)
                      ...++|+++++|||||||.||||+++|.++.+........  +...++++..+|++|++++...+.+++.|+++++....
T Consensus        31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~--~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~  108 (358)
T PRK07824         31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR--LGGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVS  108 (358)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc--cCCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcC
Confidence            3456899999999999999999999999998887765544  34567899999999999998888899999998874322


Q ss_pred             ccccchhhhccCCcccccccC--CcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHh
Q psy6874         360 TMIDTSSKIKRGTKGDASVLH--PTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVV  437 (504)
Q Consensus       360 ~~~~~~~~i~~~~~~~i~~~~--~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~  437 (504)
                      ...+....     ++.+++++  .++...+|..+..+.....   .                                  
T Consensus       109 ~~~~~~~~-----~~~i~~~~~~~~~~~~~p~~l~~~~~~~~---~----------------------------------  146 (358)
T PRK07824        109 AGFDPTAL-----PRAVAELGGGRRYTSLVPMQLAKALDDPA---A----------------------------------  146 (358)
T ss_pred             CCcCHHHH-----HHHHHHhCCCceEEEecHHHHHHHHhCcc---c----------------------------------
Confidence            22222211     22466666  4566667877665543100   0                                  


Q ss_pred             HHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccce
Q psy6874         438 FGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCA  488 (504)
Q Consensus       438 ~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~  488 (504)
                           .....++|.+++||+++++++.++++. +++++++.||+||+++.+
T Consensus       147 -----~~~~~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE~~~~~  191 (358)
T PRK07824        147 -----TAALAELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSETSGGC  191 (358)
T ss_pred             -----cCCcccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCccCCCc
Confidence                 001158999999999999999998876 599999999999987543

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.70  E-value=2e-16  Score=162.85  Aligned_cols=157  Identities=15%  Similarity=0.116  Sum_probs=118.5

Q ss_pred             CCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhh---hhccCCCCCcEEEEecChHHHHHHH-HHHHHHHhCCeEEEcC
Q psy6874         282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAF---SDAVHIEPNDVFLGYLPLAHVFELL-SESVCLLCGVAIGYST  357 (504)
Q Consensus       282 ~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~  357 (504)
                      ..++++.++|||||||.||+|.++|.++.......   ....++.++|++++..++.+..+.. ..+.++..|++++..+
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  152 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS  152 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence            45688999999999999999999999987654333   2345788999999877765433333 3456777899987765


Q ss_pred             ccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHh
Q psy6874         358 PLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVV  437 (504)
Q Consensus       358 ~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~  437 (504)
                      .......        ++.+++++||+++++|+++..+.+...+.....                                
T Consensus       153 ~~~~~~~--------~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~--------------------------------  192 (422)
T TIGR02155       153 GGQTEKQ--------VQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDP--------------------------------  192 (422)
T ss_pred             CCCHHHH--------HHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCc--------------------------------
Confidence            4432221        345889999999999999999876432210000                                


Q ss_pred             HHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccc
Q psy6874         438 FGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETT  485 (504)
Q Consensus       438 ~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~  485 (504)
                             ...++|.+++||+++++++.+.+++.||+++++.||+||++
T Consensus       193 -------~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~  233 (422)
T TIGR02155       193 -------AQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVI  233 (422)
T ss_pred             -------ccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhc
Confidence                   01479999999999999999999999999999999999985

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.65  E-value=9.3e-16  Score=158.52  Aligned_cols=156  Identities=19%  Similarity=0.185  Sum_probs=118.1

Q ss_pred             CCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhh---ccCCCCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcC
Q psy6874         282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD---AVHIEPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYST  357 (504)
Q Consensus       282 ~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~  357 (504)
                      ..++++.+.|||||||.||+|.+||.++.........   ..++.++|+++...|+.+..+... .+.+...|++++...
T Consensus        84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~  163 (445)
T TIGR03335        84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEG  163 (445)
T ss_pred             CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCC
Confidence            4578999999999999999999999998766554433   347889999999999887766543 456677888775433


Q ss_pred             ccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHh
Q psy6874         358 PLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVV  437 (504)
Q Consensus       358 ~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~  437 (504)
                      ..  ...        +..++.++||.++++|..+..+.+...+....                                 
T Consensus       164 ~~--~~~--------~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~---------------------------------  200 (445)
T TIGR03335       164 KC--TFP--------IRIIESYRPTGIVASVFKLLRLARRMKAEGID---------------------------------  200 (445)
T ss_pred             ch--hHH--------HHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC---------------------------------
Confidence            21  111        23478899999999999887776543221000                                 


Q ss_pred             HHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccccccc
Q psy6874         438 FGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTS  486 (504)
Q Consensus       438 ~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~  486 (504)
                            ....++|.+++||+++++++.+.+++.+|+++++.||+||++.
T Consensus       201 ------~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~  243 (445)
T TIGR03335       201 ------PAESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTM  243 (445)
T ss_pred             ------cccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhh
Confidence                  0014799999999999999999999989999999999999853

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>KOG3628|consensus

Probab=99.60  E-value=1.3e-13  Score=145.58  Aligned_cols=276  Identities=12%  Similarity=0.150  Sum_probs=202.5

Q ss_pred             CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCeEEE
Q psy6874          91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSL-GQEPRHNVVI  169 (504)
Q Consensus        91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gv~~gd~Vai  169 (504)
                      .++.++++..+.++||.+|+.+..         .+|        .+...+||+++..+|.+++..|+.. -+++||+|++
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~n---------~~~--------~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~L  832 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTLN---------ARG--------ATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVL  832 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEec---------cCC--------cccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEE
Confidence            488999999999999999997532         111        2446899999999999999999975 5799999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCC------CHHHHHHhHhcccccEEEEcCCchhHHHH--HhhcC--CCceEEE
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATL------GEEAIAHGINETEVNIVITTHDLLPKFRN--ILKLT--PRVSTLI  239 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l------~~~~l~~~l~~~~~~~vi~~~~~~~~~~~--~~~~~--~~l~~ii  239 (504)
                      +.+++.|++++++||+.+|++++|+.|.-      .-+.+..+++.+++..|+++......++.  +....  .....++
T Consensus       833 my~~sie~vaa~~~Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~  912 (1363)
T KOG3628|consen  833 MYPPSIEFVAAIYACLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLIL  912 (1363)
T ss_pred             EcCChHHHHHHHHHHHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhh
Confidence            99999999999999999999999998743      23568889999999999999875543322  11000  0111111


Q ss_pred             EEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhc
Q psy6874         240 YMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA  319 (504)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~  319 (504)
                      ..++.         +..     +..-...........++....++.+|++-+.--++|.--||.++|..+++.+....+.
T Consensus       913 ~~~~~---------~~t-----~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~  978 (1363)
T KOG3628|consen  913 VLPKL---------PET-----IRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKET  978 (1363)
T ss_pred             ccccc---------chh-----hhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHH
Confidence            11111         000     1110000000000222334466889999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEecChHHHHHHH-HHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHH
Q psy6874         320 VHIEPNDVFLGYLPLAHVFELL-SESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGV  398 (504)
Q Consensus       320 ~~~~~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~  398 (504)
                      ..+.+..-++.+.+.+-..|+. ..+..++.|.+..+.+|..+.....++    +..++++++.-.+.+=..+....+..
T Consensus       979 ~~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLl----l~~i~~~kvkDt~~~~~tln~c~~~l 1054 (1363)
T KOG3628|consen  979 CQLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLL----LQIISQYKVKDTYPTYSTLNLCQKGL 1054 (1363)
T ss_pred             HccccCCceEEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHH----HHHHhcccccccchhHHHHHHHHhcc
Confidence            8888888888888888888877 477889999999999988887776664    33678888877777666666666654


Q ss_pred             HHH
Q psy6874         399 HEK  401 (504)
Q Consensus       399 ~~~  401 (504)
                      ..+
T Consensus      1055 ~t~ 1057 (1363)
T KOG3628|consen 1055 ETS 1057 (1363)
T ss_pred             ccc
Confidence            433

>KOG1178|consensus

Probab=99.45  E-value=2.6e-13  Score=147.19  Aligned_cols=329  Identities=17%  Similarity=0.125  Sum_probs=201.8

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      +.++.+.+++.+..+|.+.+.......++               .+....+||++.+...+.+++.|...|..+|+.|++
T Consensus        35 ~g~~~~~~~~~~~~~~~~~~~~~~p~~~~---------------~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i   99 (1032)
T KOG1178|consen   35 MGTLEDSFRRELAEAPENTGHVIIPTASE---------------SGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAI   99 (1032)
T ss_pred             hcchhhHHHHHHhhcccCCCceEeecccc---------------cccccchhhhhhhcccchhHHHhhhcccccCceEEE
Confidence            55788899999999999999876543322               233357899999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCC----HH---HHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLG----EE---AIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYME  242 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~----~~---~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~  242 (504)
                      ++..+.++++..++.++.|...++++|.++    ++   .+++.+......++       ..+.-....+..        
T Consensus       100 ~~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~-------~~l~i~~~~~~~--------  164 (1032)
T KOG1178|consen  100 YMLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIV-------RRLNIIDILLNS--------  164 (1032)
T ss_pred             eccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhhhheeccceeh-------hhhhhHHHHhhc--------
Confidence            999999999999999999999999999998    22   12221111111111       111000000000        


Q ss_pred             CCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCC
Q psy6874         243 DQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHI  322 (504)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~  322 (504)
                      ..          ....+....+....-.........+..-++..+++.||||+||.||||..+|..+.+...++...+..
T Consensus       165 ~~----------~~~sv~~~~~~f~~~~~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~  234 (1032)
T KOG1178|consen  165 LF----------PKLSVETIADSFQMVLHNEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPP  234 (1032)
T ss_pred             cc----------cccchhhccchhhhhhccCCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCc
Confidence            00          00001111111111111100222234456779999999999999999999999999999999888888


Q ss_pred             CCCcEEEEecC-h-HHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHH
Q psy6874         323 EPNDVFLGYLP-L-AHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHE  400 (504)
Q Consensus       323 ~~~d~~l~~lP-l-~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~  400 (504)
                      ..+|++ .+.+ + +|..-.-...++|..|..+.++.... .+....+    ....++++++..+.+|++.+.+......
T Consensus       235 t~s~~~-~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~-~~~~~~l----~~~le~y~i~~~~~~~a~~~~l~~~~~~  308 (1032)
T KOG1178|consen  235 TGSDRF-TFKTSVYFDDTIQKFIGALLFNGNNLLVPTATI-KDTPGQL----ASTLERYGITVSHLLPAMCQLLLAILTT  308 (1032)
T ss_pred             Cccchh-hhhheeecccchHHHHhhHhhcCceeecccccC-ccchhhH----HHHHHhhhheeeeechhhhhhhhhhcCc
Confidence            888876 3333 2 23222222335555666565543322 2111111    2247899999999999998888653211


Q ss_pred             HHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeec
Q psy6874         401 KVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGY  479 (504)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~Y  479 (504)
                      .   .+             ++.......  .+..+          -+.||....+|+|...++...+...+ ..-...-|
T Consensus       309 ~---~~-------------~l~~~~~~~--dl~~~----------~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y  360 (1032)
T KOG1178|consen  309 S---LP-------------LLEHAFSLS--DLLTK----------RSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPY  360 (1032)
T ss_pred             c---hh-------------hhhhhhhcc--ccccc----------chhheeeeecCCccchhhhhhhhhcccceeeeecc
Confidence            1   00             000000000  00000          04799999999999999887443333 22222348


Q ss_pred             cccccccceeecc
Q psy6874         480 GLTETTSCATVMH  492 (504)
Q Consensus       480 G~TEt~~~~~~~~  492 (504)
                      +.|+..+..+...
T Consensus       361 ~s~~~~~~~s~~~  373 (1032)
T KOG1178|consen  361 LSTDPTGLVSYDD  373 (1032)
T ss_pred             cCCCCccceeHHh
Confidence            8888877666543

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.28  E-value=3.4e-11  Score=119.56  Aligned_cols=161  Identities=17%  Similarity=0.103  Sum_probs=117.2

Q ss_pred             CCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhcc---CCCCCcEEEEecChH-HHHHHHHHHHHHHhCCeEEEc
Q psy6874         281 PTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV---HIEPNDVFLGYLPLA-HVFELLSESVCLLCGVAIGYS  356 (504)
Q Consensus       281 ~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~d~~l~~lPl~-h~~~~~~~~~~l~~G~~v~~~  356 (504)
                      ...++...|--||||||+|+-+.+++..+..-...+...+   +...+|++..+.-+. +..++....++--.|+++.=.
T Consensus        87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~  166 (438)
T COG1541          87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPI  166 (438)
T ss_pred             ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEcc
Confidence            3446677789999999999999999998766555554433   778888876655521 222233334444467766544


Q ss_pred             CccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHH
Q psy6874         357 TPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKV  436 (504)
Q Consensus       357 ~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~  436 (504)
                      ++......        .+.++.++||+++++|+.+..+.+.+++...  .+                             
T Consensus       167 ~~g~~~~~--------~~l~~df~~tvI~~tps~~l~lae~~~~~G~--~~-----------------------------  207 (438)
T COG1541         167 SGGNTERQ--------LELMKDFKPTVIAATPSYLLYLAEEAEEEGI--DP-----------------------------  207 (438)
T ss_pred             CCccHHHH--------HHHHHhcCCcEEEEChHHHHHHHHHHHHcCC--Ch-----------------------------
Confidence            44333332        3348899999999999999999886654420  00                             


Q ss_pred             hHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccce
Q psy6874         437 VFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCA  488 (504)
Q Consensus       437 ~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~  488 (504)
                              .-.++|.+++|++++++++.+.+...||+.+++.||+||..+.+
T Consensus       208 --------~~~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g  251 (438)
T COG1541         208 --------DKLSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPG  251 (438)
T ss_pred             --------hhcceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCc
Confidence                    00489999999999999999999999999999999999997764

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=98.77  E-value=8.8e-08  Score=97.54  Aligned_cols=143  Identities=15%  Similarity=0.178  Sum_probs=92.1

Q ss_pred             EEEEecCCCCCCcceEEecHHHHHHHHHhh-hh--ccCCCCCcEEEEecCh-HHHHHHHHHHHHHHhC-CeEEEcCcccc
Q psy6874         287 AIIMYTSGSTGTPKGVVLTHDNMISTLKAF-SD--AVHIEPNDVFLGYLPL-AHVFELLSESVCLLCG-VAIGYSTPLTM  361 (504)
Q Consensus       287 a~i~yTSGTTG~PKgV~~th~~l~~~~~~~-~~--~~~~~~~d~~l~~lPl-~h~~~~~~~~~~l~~G-~~v~~~~~~~~  361 (504)
                      ..+..||||||.|-.+..+........... ..  ..+...++++...+.- .+.+.      .+.+. ..+.+.+   +
T Consensus       102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~~ly~------~~~~~~~~~~~~~---l  172 (430)
T TIGR02304       102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADNNLYQ------SVNNRWISLDFFD---L  172 (430)
T ss_pred             EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccChhHHH------HHHhccceeeecC---C
Confidence            456679999999999999988653322222 11  1245555665544211 12221      11111 1122222   1


Q ss_pred             ccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHH
Q psy6874         362 IDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQT  441 (504)
Q Consensus       362 ~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~  441 (504)
                      .+....    .++.+++++||++.+.|+.+..|.+...+...                                      
T Consensus       173 ~~~~~~----~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l--------------------------------------  210 (430)
T TIGR02304       173 LAPFQA----HIKRLNQRKPSIIVAPPSVLRALALEVMEGEL--------------------------------------  210 (430)
T ss_pred             CcCHHH----HHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCC--------------------------------------
Confidence            122211    13458999999999999999999875432100                                      


Q ss_pred             HHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccccc
Q psy6874         442 KKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTET  484 (504)
Q Consensus       442 ~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt  484 (504)
                          .-++|.++++|++++++..+.+++.||++|++.||+||+
T Consensus       211 ----~~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tEg  249 (430)
T TIGR02304       211 ----TIKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATEG  249 (430)
T ss_pred             ----CCCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCchh
Confidence                026899999999999999999999999999999999993

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>KOG3628|consensus

Probab=98.42  E-value=7.2e-07  Score=95.58  Aligned_cols=303  Identities=17%  Similarity=0.183  Sum_probs=190.9

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHH-HHHhCCCCCCCeEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGK-GLRSLGQEPRHNVV  168 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~-~L~~~Gv~~gd~Va  168 (504)
                      ..+...++++.-..++...|.+..+         ..         |....+||+.+..++.++|+ .|-+-|..++|+|.
T Consensus        93 ~~d~~avl~~~~nhs~~~ta~i~id---------~k---------gk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vv  154 (1363)
T KOG3628|consen   93 LTDIIAVLRYRRNHSATSTAHICID---------KK---------GKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVV  154 (1363)
T ss_pred             hcchHHHHHhhccCCCCCceEEEEc---------CC---------CceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEE
Confidence            3456667777777788888887653         22         33578999999999999999 56678999999999


Q ss_pred             EEcCCC--HHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCC
Q psy6874         169 IFAETR--AEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLT  246 (504)
Q Consensus       169 i~~~n~--~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~  246 (504)
                      ++...+  .|+++..++|...|...+|+++..+-+++..+++....+++++.......+..........+.+-+....  
T Consensus       155 L~Y~~~e~ie~~isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v~~w~t~--  232 (1363)
T KOG3628|consen  155 LYYRKCEAIEFLISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAVAWWKTN--  232 (1363)
T ss_pred             EEEEhhhhhHHhhhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHHHhhhcc--
Confidence            988776  7999999999999999999999999999999999999999998765433222110000000000000000  


Q ss_pred             cccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhh--------
Q psy6874         247 STDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD--------  318 (504)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~--------  318 (504)
                           +.+   ..+.++..         ..+.  ..-. ..+|=||++++|.--||..+|. +..+...+..        
T Consensus       233 -----~~k---~~~~~~k~---------~~P~--~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~  291 (1363)
T KOG3628|consen  233 -----DFK---GNYTKDKI---------KKPR--MQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPAR  291 (1363)
T ss_pred             -----ccc---ceeehhhc---------cCCc--eeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHH
Confidence                 000   01111100         1111  1112 8999999999999999999998 5554433321        


Q ss_pred             ------------ccCCCCCcEEEEecChHHHHHHH-HHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEE
Q psy6874         319 ------------AVHIEPNDVFLGYLPLAHVFELL-SESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALT  385 (504)
Q Consensus       319 ------------~~~~~~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~  385 (504)
                                  .+.....++.+..+...-..|++ .++.++++|.+....+........ .+    ...+..+|.+++.
T Consensus       292 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG-~~----~~l~~k~R~~~~l  366 (1363)
T KOG3628|consen  292 FAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPG-LI----ANLITKYRATWSL  366 (1363)
T ss_pred             HHHhhhcchhhhccccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCc-ch----hhhhccceeEEEe
Confidence                        22445677777777777677776 478899999988776553222211 11    2235678888776


Q ss_pred             eccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHH
Q psy6874         386 AVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHE  465 (504)
Q Consensus       386 ~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~  465 (504)
                      .--.-+....-..++                 ..             -..+.|.+-+....|++|.+++.=..+.++..+
T Consensus       367 td~~~Lkq~~~ny~~-----------------~p-------------~a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~  416 (1363)
T KOG3628|consen  367 TDYAGLKQPVYNYQE-----------------DP-------------KATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQE  416 (1363)
T ss_pred             ecccccCcccccccC-----------------Cc-------------ccccchhhccCCCccceeeeEEeeeecchHHHH
Confidence            533333222211111                 00             011122233333458999999998888888665


Q ss_pred             HHH
Q psy6874         466 LIK  468 (504)
Q Consensus       466 ~~~  468 (504)
                      -..
T Consensus       417 ivs  419 (1363)
T KOG3628|consen  417 IVS  419 (1363)
T ss_pred             HHH
Confidence            443

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=96.87  E-value=0.0071  Score=60.51  Aligned_cols=164  Identities=16%  Similarity=0.182  Sum_probs=85.7

Q ss_pred             CCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhcc----CCCCC-cEEEEecChHHH---HHH-H-HHHHHHHhCC
Q psy6874         282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV----HIEPN-DVFLGYLPLAHV---FEL-L-SESVCLLCGV  351 (504)
Q Consensus       282 ~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~----~~~~~-d~~l~~lPl~h~---~~~-~-~~~~~l~~G~  351 (504)
                      .++++..++.||||||.|--+.+.+..+......+...+    ..... -.++...|-...   ++. . .....+..+.
T Consensus        87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~  166 (365)
T PF04443_consen   87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS  166 (365)
T ss_pred             ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence            346678889999999998556666655555443333222    22221 223333343211   111 1 1222333444


Q ss_pred             eEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcc
Q psy6874         352 AIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCP  431 (504)
Q Consensus       352 ~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~  431 (504)
                      .-.+ +... .+....+.. ........+|..++++|.++-.++..+++.....                          
T Consensus       167 ~~~l-~~~~-ld~~~~~~~-L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~--------------------------  217 (365)
T PF04443_consen  167 RFAL-DNDE-LDLEGLIEA-LFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRF--------------------------  217 (365)
T ss_pred             eeee-cCCc-cCHHHHHHH-HHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcc--------------------------
Confidence            4222 2211 121111110 1112356779999999998877766433321110                          


Q ss_pred             hhhHHhHHHHHHhcCCcEEEEEEcc------CCCCH-HHHHHHHHHhCC----ceeeecccccccc
Q psy6874         432 LIDKVVFGQTKKLLGGRVRLILSGG------APLSP-DTHELIKVCLCE----KVIQGYGLTETTS  486 (504)
Q Consensus       432 ~~~~~~~~~~~~~~g~~lr~i~~gG------~~l~~-~~~~~~~~~~~~----~v~~~YG~TEt~~  486 (504)
                                  .+....+++-.||      +.++. +..+.+++.||+    .+++.|||||...
T Consensus       218 ------------~L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s  271 (365)
T PF04443_consen  218 ------------RLPKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNS  271 (365)
T ss_pred             ------------cCCCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccch
Confidence                        0112455666654      45654 567777888988    6999999999643

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=95.15  E-value=0.22  Score=50.51  Aligned_cols=114  Identities=12%  Similarity=0.034  Sum_probs=84.4

Q ss_pred             cccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcC----CCHHHHHHHHHHHhCCCeEEE
Q psy6874         118 EEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAE----TRAEWMIAAQACFKQNIPVVT  193 (504)
Q Consensus       118 ~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~----n~~e~~~~~lA~~~~G~~~v~  193 (504)
                      .....+.+|+       ....-+|+.|+...+..+|+.|...|..+||+|..+..    ..-  +-..+|+.++|+.++|
T Consensus        95 ihaSSGTTGk-------Pt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg--~~~~~ga~rig~~vip  165 (438)
T COG1541          95 IHASSGTTGK-------PTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGG--LGLHYGAERIGATVIP  165 (438)
T ss_pred             EEccCCCCCC-------ceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCC--chhHHHHHhhCEEEEc
Confidence            3444555554       33456899999999999999999999999999888765    222  6678899999999999


Q ss_pred             ecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcC------CCceEEEEE
Q psy6874         194 IYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLT------PRVSTLIYM  241 (504)
Q Consensus       194 i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~------~~l~~ii~~  241 (504)
                      +.+.. -+.-..++++.++.++.+.+..+-.+.+...+.      -.++.++..
T Consensus       166 ~~~g~-~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~g  218 (438)
T COG1541         166 ISGGN-TERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFG  218 (438)
T ss_pred             cCCcc-HHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEe
Confidence            98843 455568899999999999988665444444333      235555554

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=93.27  E-value=0.12  Score=54.74  Aligned_cols=56  Identities=20%  Similarity=0.189  Sum_probs=34.5

Q ss_pred             CCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCC-cceEEecHHHHHH
Q psy6874         255 QGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGT-PKGVVLTHDNMIS  311 (504)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~-PKgV~~th~~l~~  311 (504)
                      ..+.+.+++++...-+.-. .....-..++.+.+...||||||. ||-+.+|...+..
T Consensus        52 ~~VPi~~Yed~~pyIeR~~-~Ge~~vL~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~  108 (528)
T PF03321_consen   52 KRVPITDYEDYRPYIERIA-EGEENVLTPGPPIYFALTSGTTGGKSKLIPYTKEFLKE  108 (528)
T ss_dssp             HHS--BEHHHHHHHHHHHH-TT--CCTSSS--SEEEEEEEEETTEEEEEEESHHHHHH
T ss_pred             HhCCCccHHHHHHHHHHHh-cCCCCCCCCCCCCeEEeCCCCCCCCCceeeccHHHHHH
Confidence            3456777777643322211 111224566779999999999999 9999999987644

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=90.17  E-value=3.5  Score=42.35  Aligned_cols=106  Identities=15%  Similarity=0.106  Sum_probs=74.8

Q ss_pred             eEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCH--HHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEE
Q psy6874         138 EWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRA--EWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIV  215 (504)
Q Consensus       138 ~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~--e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~v  215 (504)
                      ..+|..++......+++.+...|+++||++........  ..+...+++...|+.++++.... .+.+...|++.+++++
T Consensus        93 v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l  171 (422)
T TIGR02155        93 VGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDII  171 (422)
T ss_pred             eccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEE
Confidence            45788888777777788887889999999887654432  22334667888999999887654 5788899999999999


Q ss_pred             EEcCCchhHHHHHhhc------CCCceEEEEEcCC
Q psy6874         216 ITTHDLLPKFRNILKL------TPRVSTLIYMEDQ  244 (504)
Q Consensus       216 i~~~~~~~~~~~~~~~------~~~l~~ii~~~~~  244 (504)
                      +..+..+..+.+....      ...++.+++..+.
T Consensus       172 ~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~  206 (422)
T TIGR02155       172 MVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEP  206 (422)
T ss_pred             EEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCc
Confidence            9988766544332211      1356666665443

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=88.62  E-value=6.2  Score=40.94  Aligned_cols=105  Identities=11%  Similarity=0.067  Sum_probs=72.1

Q ss_pred             ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCCHH--HHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccE
Q psy6874         137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAE--WMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNI  214 (504)
Q Consensus       137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~~e--~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~  214 (504)
                      ...+|.+++...+...++.+...|+.+||++.++.+....  .....+++...|+.+++...   .+.....+++.++.+
T Consensus       103 ~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~  179 (445)
T TIGR03335       103 SFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTG  179 (445)
T ss_pred             eeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCE
Confidence            3568999999988888988888899999999988765532  23445788899998877543   234567888999998


Q ss_pred             EEEcCCchhHHHHHhh------cCCCceEEEEEcCC
Q psy6874         215 VITTHDLLPKFRNILK------LTPRVSTLIYMEDQ  244 (504)
Q Consensus       215 vi~~~~~~~~~~~~~~------~~~~l~~ii~~~~~  244 (504)
                      ++.....+-.+.+...      ....++.+++..+.
T Consensus       180 l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~  215 (445)
T TIGR03335       180 IVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGES  215 (445)
T ss_pred             EEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCC
Confidence            8876554322222111      12356666665543

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=86.95  E-value=4.5  Score=43.17  Aligned_cols=60  Identities=13%  Similarity=0.192  Sum_probs=38.6

Q ss_pred             ccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCC-CcceEEecHHHHHH
Q psy6874         252 NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTG-TPKGVVLTHDNMIS  311 (504)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG-~PKgV~~th~~l~~  311 (504)
                      .+...+.+.+++++...-+.-.......-..++.+.+..-|||||| .+|-+.+|+..+-.
T Consensus        69 ~F~~~VPv~~Yedl~pyI~Ri~~Ge~s~vL~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~  129 (612)
T PLN02620         69 TFKKVMPVITYEDIQPDINRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEEELGR  129 (612)
T ss_pred             HHHHhCCCccHHHhHHHHHHHHcCCCCCccCCCChhhhhhcCCCCCCceeeeecCHHHHHH
Confidence            3455567788887643322211111112244677888999999997 59999999997654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	504
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		3e-09
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		1e-08
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		2e-08
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-08
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		2e-08
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		2e-08
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		6e-08
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		8e-08
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		9e-08
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		1e-07
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		5e-07
4gr4_A	469	Crystal Structure Of Slgn1deltaasub Length = 469		5e-07
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		7e-07
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		8e-07
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		1e-06
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		2e-06
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		2e-06
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		2e-06
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		5e-06
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		6e-06
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		6e-06
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		5e-05
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		2e-04
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		3e-04
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		3e-04
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		3e-04
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		3e-04
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		3e-04
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		4e-04
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		5e-04
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		6e-04
3vnq_A	544	Co-crystal Structure Of Nrps Adenylation Protein Cy		8e-04

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 84/203 (41%), Gaps = 52/203 (25%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
           D A+++YTSG+TG PKG V+    + +TL A +DA      DV +  LPL HV       
Sbjct: 156 DPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVH------ 209
Query: 345 VCLLCGVAIGYSTPLTMIDTSSKIKR-GTKGDASVLH--PTALTAVPLILDRIYKGVHEK 401
                G+ +G   PL    +   + R  T+G A  L+   T L  VP +  RI + +   
Sbjct: 210 -----GLVLGILGPLRRGGSVRHLGRFSTEGAARELNDGATMLFGVPTMYHRIAETLP-- 262
Query: 402 VSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSP 461
              A P                                +  K L G  RL++SG A L  
Sbjct: 263 ---ADP--------------------------------ELAKALAG-ARLLVSGSAALPV 286
Query: 462 DTHELIKVCLCEKVIQGYGLTET 484
             HE I      +VI+ YG+TET
Sbjct: 287 HDHERIAAATGRRVIERYGMTET 309

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 53/208 (25%)
Query: 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA----VHIEPNDVFLGYLPLAHV 337
           +P D   + Y+SG+TG PKGV+LTH  +I+++    D     ++    DV L  LP+ H+
Sbjct: 176 SPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHI 235
Query: 338 FELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKG 397
           + L S    +LCG+ +G   P+ ++    K + G+                 +L  I K 
Sbjct: 236 YALNS---IMLCGLRVG--APILIM---PKFEIGS-----------------LLGLIEK- 269
Query: 398 VHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGA 457
              KVS A      + + A            + P +DK             +R+I SGGA
Sbjct: 270 --YKVSIAPVVPPVMMSIA------------KSPDLDKHDLSS--------LRMIKSGGA 307
Query: 458 PLSPDTHELIKVCLCE-KVIQGYGLTET 484
           PL  +  + ++    + ++ QGYG+TE 
Sbjct: 308 PLGKELEDTVRAKFPQARLGQGYGMTEA 335

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 126/345 (36%), Gaps = 68/345 (19%)
Query: 152 FGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETE 211
             + ++  G    H +V+ +E   ++ +         + V        E  + + +N ++
Sbjct: 68  LAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQ 127
Query: 212 VNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKXXXX 271
             +V  +   L K  N+ K  P +  +I M+   + TD   F+       +  +      
Sbjct: 128 PTVVFVSKKGLQKILNVQKKLPIIQKIIIMD---SKTDYQGFQS-----MYTFVTSHLPP 179
Query: 272 XXXXXXXXPPT---PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV---HIEPN 325
                   P +    K  A+IM +SGSTG PKGV L H           D +    I P+
Sbjct: 180 GFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPD 239
Query: 326 DVFLGYLPLAHVFELLSESVCLLCG--VAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTA 383
              L  +P  H F + +    L+CG  V + Y     +   S    +  K  +++L PT 
Sbjct: 240 TAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSL---QDYKIQSALLVPT- 295
Query: 384 LTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKK 443
                                       LF+F       +AK      LIDK       +
Sbjct: 296 ----------------------------LFSF-------FAK----STLIDKYDLSNLHE 316
Query: 444 LLGGRVRLILSGGAPLSPDTHELI-KVCLCEKVIQGYGLTETTSC 487
                   I SGGAPLS +  E + K      + QGYGLTETTS 
Sbjct: 317 --------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSA 353

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 136/369 (36%), Gaps = 78/369 (21%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           S+ +  +++   GK L++ G      + + +E   E+ I   A     + V         
Sbjct: 54  SYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQ--------LTSTDTTN 252
             + H +  ++  IV ++   L K   + K    + T++ ++ +        L +    N
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN 173
Query: 253 FKQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST 312
              G +   FK +                  +  A+IM +SGSTG PKGV LTH+N+++ 
Sbjct: 174 TPPGFQASSFKTVEVDRK-------------EQVALIMNSSGSTGLPKGVQLTHENIVTR 220
Query: 313 LKAFSDAVH---IEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIK 369
                D ++   + P    L  +P  H F + +    L+CG  +     LT  D  + +K
Sbjct: 221 FSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRV---VMLTKFDEETFLK 277
Query: 370 --RGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRG 427
             +  K  + +L PT                                FA   K +   + 
Sbjct: 278 TLQDYKCTSVILVPT-------------------------------LFAILNKSELLNKY 306
Query: 428 FRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELI-KVCLCEKVIQGYGLTETTS 486
               L++                 I SGGAPLS +  E + +      V QGYGLTETTS
Sbjct: 307 DLSNLVE-----------------IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTS 349
Query: 487 CATVMHLND 495
              +    D
Sbjct: 350 AIIITPEGD 358

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 126/345 (36%), Gaps = 68/345 (19%)
Query: 152 FGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETE 211
             + ++  G    H +V+ +E   ++ +         + V        E  + + +N ++
Sbjct: 63  LAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQ 122
Query: 212 VNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKXXXX 271
             +V  +   L K  N+ K  P +  +I M+   + TD   F+       +  +      
Sbjct: 123 PTVVFVSKKGLQKILNVQKKLPIIQKIIIMD---SKTDYQGFQS-----MYTFVTSHLPP 174
Query: 272 XXXXXXXXPPT---PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV---HIEPN 325
                   P +    K  A+IM +SGSTG PKGV L H           D +    I P+
Sbjct: 175 GFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPD 234
Query: 326 DVFLGYLPLAHVFELLSESVCLLCG--VAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTA 383
              L  +P  H F + +    L+CG  V + Y     +   S    +  K  +++L PT 
Sbjct: 235 TAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSL---QDYKIQSALLVPT- 290
Query: 384 LTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKK 443
                                       LF+F       +AK      LIDK       +
Sbjct: 291 ----------------------------LFSF-------FAK----STLIDKYDLSNLHE 311
Query: 444 LLGGRVRLILSGGAPLSPDTHELI-KVCLCEKVIQGYGLTETTSC 487
                   I SGGAPLS +  E + K      + QGYGLTETTS 
Sbjct: 312 --------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSA 348

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 126/345 (36%), Gaps = 68/345 (19%)
Query: 152 FGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETE 211
             + ++  G    H +V+ +E   ++ +         + V        E  + + +N ++
Sbjct: 63  LAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQ 122
Query: 212 VNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKXXXX 271
             +V  +   L K  N+ K  P +  +I M+   + TD   F+       +  +      
Sbjct: 123 PTVVFVSKKGLQKILNVQKKLPIIQKIIIMD---SKTDYQGFQS-----MYTFVTSHLPP 174
Query: 272 XXXXXXXXPPT---PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV---HIEPN 325
                   P +    K  A+IM +SGSTG PKGV L H           D +    I P+
Sbjct: 175 GFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPD 234
Query: 326 DVFLGYLPLAHVFELLSESVCLLCG--VAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTA 383
              L  +P  H F + +    L+CG  V + Y     +   S    +  K  +++L PT 
Sbjct: 235 TAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSL---QDYKIQSALLVPT- 290
Query: 384 LTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKK 443
                                       LF+F       +AK      LIDK       +
Sbjct: 291 ----------------------------LFSF-------FAK----STLIDKYDLSNLHE 311
Query: 444 LLGGRVRLILSGGAPLSPDTHELI-KVCLCEKVIQGYGLTETTSC 487
                   I SGGAPLS +  E + K      + QGYGLTETTS 
Sbjct: 312 --------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSA 348

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 69/200 (34%), Gaps = 50/200 (25%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
           D A I+YTSG+TG  KG  L+HDN+ S      D     P+DV +  LP+ H   L   S
Sbjct: 156 DLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVAS 215
Query: 345 VCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSR 404
              L   A G    L   D    +    +        T L  VP    R+          
Sbjct: 216 NVTL--FARGSXIFLPKFDPDKILDLXARA-------TVLXGVPTFYTRL---------- 256
Query: 405 ASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTH 464
                                   + P + K   G          RL +SG APL  DTH
Sbjct: 257 -----------------------LQSPRLTKETTGHX--------RLFISGSAPLLADTH 285
Query: 465 ELIKVCLCEKVIQGYGLTET 484
                     V++ YG TET
Sbjct: 286 REWSAKTGHAVLERYGXTET 305

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 7/77 (9%)
Query: 282 TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA----VHIEPNDVFLGYLPLAHV 337
           +P D   + Y+SG+TG PKGV+LTH  +++++    D     ++   +DV L  LP+ H+
Sbjct: 223 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHI 282
Query: 338 FELLSESVCLLCGVAIG 354
           + L S    +LCG+ +G
Sbjct: 283 YALNS---IMLCGLRVG 296

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 135/367 (36%), Gaps = 74/367 (20%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           S+ +  +++   GK L++ G      + + +E   E+ I   A     + V         
Sbjct: 54  SYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQ--------LTSTDTTN 252
             + H +  ++  IV ++   L K   + K    + T++ ++ +        L +    N
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN 173
Query: 253 FKQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST 312
              G +   FK +                  +  A+IM +SGSTG PKGV LTH+N+++ 
Sbjct: 174 TPPGFQASSFKTVEVDRK-------------EQVALIMNSSGSTGLPKGVQLTHENIVTR 220
Query: 313 LKAFSDAVH---IEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIK 369
                D ++   + P    L  +P  H F + +    L+CG  +     LT  D  + +K
Sbjct: 221 FSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRV---VMLTKFDEETFLK 277
Query: 370 RGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFR 429
                    L     T+V L+                     LFA              +
Sbjct: 278 --------TLQDYKCTSVILV-------------------PTLFAIL-----------NK 299
Query: 430 CPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELI-KVCLCEKVIQGYGLTETTSCA 488
             L++K       ++  G        GAPLS +  E + +      V QGYGLTETTS  
Sbjct: 300 SELLNKYDLSNLVEIASG--------GAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAI 351
Query: 489 TVMHLND 495
            +    D
Sbjct: 352 IITPEGD 358

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 281 PTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS-DAVHIEPNDVFLGYLPLAH 336
           P P D A + YTSGST  P+GV++TH  + + L+A S D + + P D  + +LP  H
Sbjct: 172 PVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDRCVSWLPFYH 228

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 134/367 (36%), Gaps = 74/367 (20%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           S+ +  +++   GK L++ G      + + +E   E+ I   A     + V         
Sbjct: 54  SYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQ--------LTSTDTTN 252
             + H +  ++  IV ++   L K   + K    + T++ ++ +        L +    N
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN 173
Query: 253 FKQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST 312
              G +   FK +                  +  A+IM +SGSTG PKGV LTH+N+++ 
Sbjct: 174 TPPGYQASSFKTVEVDRK-------------EQVALIMNSSGSTGLPKGVQLTHENIVTR 220
Query: 313 LKAFSDAVH---IEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIK 369
                D ++   + P    L  +P  H F + +    L+CG  +     LT  D  + +K
Sbjct: 221 FSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRV---VMLTKFDEETFLK 277
Query: 370 RGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFR 429
                    L     T V L+                     LFA              +
Sbjct: 278 --------TLQDYKCTNVILV-------------------PTLFAIL-----------NK 299
Query: 430 CPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELI-KVCLCEKVIQGYGLTETTSCA 488
             L++K       ++  G        GAPLS +  E + +      V QGYGLTETTS  
Sbjct: 300 SELLNKYDLSNLVEIASG--------GAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAI 351
Query: 489 TVMHLND 495
            +    D
Sbjct: 352 IITPEGD 358

>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 100/262 (38%), Gaps = 49/262 (18%)
Query: 86  IRDGVDTMEKVLRYVVTRFSDQRCLG-----------TRQILAEEDEKQPNGRIFKKYVM 134
           +R G D+ E  L ++   ++D R  G             ++   +  + P+       ++
Sbjct: 40  VRHGTDSREGCLAHIEHHWTDLRPTGPAVERAPAGACVHELFEAQAARAPD----AVALL 95
Query: 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTI 194
            + +  ++  +N+ A      L  LG  P   V +  E   + ++A  A  K       +
Sbjct: 96  HEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTML 155
Query: 195 YATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTS-TDTTNF 253
                 E +A  + +T   +++T+  L  +           +T +Y+ED+  S     N 
Sbjct: 156 DPQFPVERLALSLEDTGAPLLVTSRPLSGRLTG--------TTTLYVEDEAASDAPAGNL 207
Query: 254 KQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTL 313
             G+                         P+D A +M+TSGSTG PKGV+  H  +  T 
Sbjct: 208 ATGV------------------------GPEDVACVMFTSGSTGRPKGVMSPHRALTGTY 243
Query: 314 KAFSDAVHIEPNDVFLGYLPLA 335
               D     P++VFL   P++
Sbjct: 244 LG-QDYAGFGPDEVFLQCSPVS 264

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 100/262 (38%), Gaps = 49/262 (18%)
Query: 86  IRDGVDTMEKVLRYVVTRFSDQRCLG-----------TRQILAEEDEKQPNGRIFKKYVM 134
           +R G D+ E  L ++   ++D R  G             ++   +  + P+       ++
Sbjct: 40  VRHGTDSREGCLAHIEHHWTDLRPTGPAVERAPAGACVHELFEAQAARAPD----AVALL 95
Query: 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTI 194
            + +  ++  +N+ A      L  LG  P   V +  E   + ++A  A  K       +
Sbjct: 96  HEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTML 155
Query: 195 YATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTS-TDTTNF 253
                 E +A  + +T   +++T+  L  +           +T +Y+ED+  S     N 
Sbjct: 156 DPQFPVERLALSLEDTGAPLLVTSRPLSGRLTG--------TTTLYVEDEAASDAPAGNL 207
Query: 254 KQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTL 313
             G+                         P+D A +M+TSGSTG PKGV+  H  +  T 
Sbjct: 208 ATGV------------------------GPEDVACVMFTSGSTGRPKGVMSPHRALTGTY 243
Query: 314 KAFSDAVHIEPNDVFLGYLPLA 335
               D     P++VFL   P++
Sbjct: 244 LG-QDYAGFGPDEVFLQCSPVS 264

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 136/367 (37%), Gaps = 98/367 (26%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           S+ ++++EA    + L+  G      V ++ +   E +I      K     + +   L E
Sbjct: 491 SYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPE 550
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
           + I++ + ++    ++T  ++  +   +    P   T ++++DQ      T F++     
Sbjct: 551 DRISYMLADSAAACLLTHQEMKEQAAEL----PYTGTTLFIDDQ------TRFEE----- 595
Query: 261 PFKQIVKXXXXXXXXXXXXPPT---PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLK--- 314
                              P T   P D A IMYTSG+TG PKG + TH N+   +K   
Sbjct: 596 ---------------QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHVD 640
Query: 315 --AFSDAVHIEPNDVFL---GYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIK 369
             AFSD       D FL    Y   A  F+  +    +L    +  +   T++DT     
Sbjct: 641 YMAFSD------QDTFLSVSNYAFDAFTFDFYA---SMLNAARLIIADEHTLLDTERLTD 691
Query: 370 RGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFR 429
              + + +V+  T                            ALF    +    W K G R
Sbjct: 692 LILQENVNVMFATT---------------------------ALFNLLTDAGEDWMK-GLR 723
Query: 430 CPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCAT 489
           C     ++FG      G R  +         P   + +++    K+I  YG TE T  AT
Sbjct: 724 C-----ILFG------GERASV---------PHVRKALRIMGPGKLINCYGPTEGTVFAT 763
Query: 490 VMHLNDM 496
              ++D+
Sbjct: 764 AHVVHDL 770

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 123/345 (35%), Gaps = 68/345 (19%)
Query: 152 FGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETE 211
             + ++  G    H +V+ +E   ++ +         + V        E  + + +N ++
Sbjct: 68  LAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNERELLNSMNISQ 127
Query: 212 VNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKXXXX 271
             +V  +   L K  N+ K  P +  +I M+   + TD   F+       +  +      
Sbjct: 128 PTVVFVSKKGLQKILNVQKKLPIIQKIIIMD---SKTDYQGFQS-----MYTFVTSHLPP 179
Query: 272 XXXXXXXXPPT---PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV---HIEPN 325
                   P +    K  A+IM +SGSTG PKGV L H  +        D +    I P+
Sbjct: 180 GFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHARDPIFGNQIAPD 239
Query: 326 DVFLGYLPLAHVFELLSESVCLLCG--VAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTA 383
              L  +P  H F + +    L+ G  V + Y     +   S    +  K  +++L PT 
Sbjct: 240 TAILSVVPFHHGFGMFTTLGYLISGFRVVLMYRFEEELFLRSL---QDYKIQSALLVPT- 295
Query: 384 LTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKK 443
                                       LF+F             +  LIDK       +
Sbjct: 296 ----------------------------LFSFL-----------AKSTLIDKYDLSNLHE 316
Query: 444 LLGGRVRLILSGGAPLSPDTHELI-KVCLCEKVIQGYGLTETTSC 487
           +  G        GAPLS +  E + K      + QGYGLTETTS 
Sbjct: 317 IASG--------GAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSA 353

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 69/201 (34%), Gaps = 50/201 (24%)
Query: 284 KDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSE 343
            D A I+YTSG+TG   G +L+HDN+ S      D     P+DV +  LP+ H   L   
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 344 SVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVS 403
           S   L   A G    L   D    +    +        T L  VP    R+         
Sbjct: 215 SNVTLF--ARGSMIFLPXFDPDXILDLMARA-------TVLMGVPTFYTRL--------- 256
Query: 404 RASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDT 463
                                    + P +     G  +        L +SG APL  DT
Sbjct: 257 ------------------------LQSPRLTXETTGHMR--------LFISGSAPLLADT 284
Query: 464 HELIKVCLCEKVIQGYGLTET 484
           H          V++ YG+TET
Sbjct: 285 HREWSAXTGHAVLERYGMTET 305

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 69/201 (34%), Gaps = 50/201 (24%)
Query: 284 KDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSE 343
            D A I+YTSG+TG   G +L+HDN+ S      D     P+DV +  LP+ H   L   
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 344 SVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVS 403
           S   L   A G    L   D    +    +        T L  VP    R+         
Sbjct: 215 SNVTLF--ARGSMIFLPXFDPDXILDLMARA-------TVLMGVPTFYTRL--------- 256
Query: 404 RASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDT 463
                                    + P +     G  +        L +SG APL  DT
Sbjct: 257 ------------------------LQSPRLTXETTGHMR--------LFISGSAPLLADT 284
Query: 464 HELIKVCLCEKVIQGYGLTET 484
           H          V++ YG+TET
Sbjct: 285 HREWSAXTGHAVLERYGMTET 305

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 69/201 (34%), Gaps = 50/201 (24%)
Query: 284 KDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSE 343
            D A I+YTSG+TG   G +L+HDN+ S      D     P+DV +  LP+ H   L   
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 344 SVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVS 403
           S   L   A G    L   D    +    +        T L  VP    R+         
Sbjct: 215 SNVTL--FARGSMIFLPXFDPDXILDLMARA-------TVLMGVPTFYTRL--------- 256
Query: 404 RASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDT 463
                                    + P +     G  +        L +SG APL  DT
Sbjct: 257 ------------------------LQSPRLTXETTGHMR--------LFISGSAPLLADT 284
Query: 464 HELIKVCLCEKVIQGYGLTET 484
           H          V++ YG+TET
Sbjct: 285 HREWSAXTGHAVLERYGMTET 305

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
           D   IMYTSG+TG PKGVV TH+++ S   +++  + +   D  L  LP+ HV  L +  
Sbjct: 171 DNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVI 230
Query: 345 VCLLCGVAI 353
              + GV +
Sbjct: 231 FSAMRGVTL 239

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
           D   IMYTSG+TG PKGVV TH+++ S   +++  + +   D  L  LP+ HV  L +  
Sbjct: 157 DNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVI 216
Query: 345 VCLLCGVAI 353
              + GV +
Sbjct: 217 FSAMRGVTL 225

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 286 TAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV---HIEPNDVFLGYLPLAHVFELLS 342
           TA+IM +SGSTG PKGV LTH N+        D V    I P+   L  +P  H F + +
Sbjct: 226 TALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILTVIPFHHGFGMFT 285
Query: 343 ESVCLLCGVAI 353
               L CG  I
Sbjct: 286 TLGYLTCGFRI 296

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
           D A + YTSGST  PKGV ++H N++  L     + H     +   +LP  H   L+   
Sbjct: 168 DIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHXNDETIIFSWLPPHHDXGLIG-- 225
Query: 345 VCLLC----GVAIGYSTPLTMIDTS-SKIKRGTKGDASV 378
            C+L     G+     +P + +    S +K  TK  A++
Sbjct: 226 -CILTPIYGGIQAIXXSPFSFLQNPLSWLKHITKYKATI 263

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 101/245 (41%), Gaps = 39/245 (15%)
Query: 113 RQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAE 172
            Q+  E+  K+PN       ++ + E  +++++N +A    +     G      V I  E
Sbjct: 42  HQLFEEQVSKRPNNVA----IVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMME 97
Query: 173 TRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLT 232
              +  I   A  K     V I     +E I + +++++  +++T   L+    NI +  
Sbjct: 98  KSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI-QFN 156
Query: 233 PRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYT 292
            +V   I+ ED +   + TN                           P    D A ++YT
Sbjct: 157 GQVE--IFEEDTIKIREGTNLH------------------------VPSKSTDLAYVIYT 190
Query: 293 SGSTGTPKGVVLTHDNMISTLKA-FSDAVHIEPNDVFLGYLPL---AHVFELLSESVCLL 348
           SG+TG PKG +L H   IS LK  F +++++   D    +  +   A V+E+    + LL
Sbjct: 191 SGTTGNPKGTMLEHKG-ISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMF---MALL 246
Query: 349 CGVAI 353
            G ++
Sbjct: 247 TGASL 251

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 129/317 (40%), Gaps = 37/317 (11%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           S+ +++ +   F   L  LG +    V I+     E  +A  AC +       I+     
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNI---------LKLTPRVSTLIYMEDQLTSTDTT 251
           EA+A  I ++   +VIT  + +   R+I         LK  P V+++ ++     +    
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK-NPNVTSVEHVIVLKRTGSDI 227
Query: 252 NFKQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDN-MI 310
           ++++G ++  ++ +++                +D   I+YTSGSTG PKGV+ T    ++
Sbjct: 228 DWQEGRDLW-WRDLIEKASPEHQPEAM---NAEDPLFILYTSGSTGKPKGVLHTTGGYLV 283
Query: 311 STLKAFSDAVHIEPNDVF-----LGYLPLAHVFELLSESVC----LLCGVAIGYSTPLTM 361
                F       P D++     +G++   H + L     C    L+      + TP  M
Sbjct: 284 YAATTFKYVFDYHPGDIYWCTADVGWV-TGHSYLLYGPLACGATTLMFEGVPNWPTPARM 342
Query: 362 IDTSSKIKRGTKGDASVLH--PTALTAVPLILDRIYKGVHEKVSRA-SPFKRALFAFAFE 418
                K +       ++L+  PTA+ A+    D+  +G      R        +   A+E
Sbjct: 343 CQVVDKHQ------VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 396
Query: 419 YKRKWAKRG-FRCPLID 434
           +   W K G  +CP++D
Sbjct: 397 W--YWKKIGKEKCPVVD 411

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 129/317 (40%), Gaps = 37/317 (11%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           S+ +++ +   F   L  LG +    V I+     E  +A  AC +       I+     
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNI---------LKLTPRVSTLIYMEDQLTSTDTT 251
           EA+A  I ++   +VIT  + +   R+I         LK  P V+++ ++     +    
Sbjct: 169 EAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK-NPNVTSVEHVIVLKRTGSDI 227
Query: 252 NFKQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDN-MI 310
           ++++G ++  ++ +++                +D   I+YTSGSTG PKGV+ T    ++
Sbjct: 228 DWQEGRDLW-WRDLIEKASPEHQPEAM---NAEDPLFILYTSGSTGKPKGVLHTTGGYLV 283
Query: 311 STLKAFSDAVHIEPNDVF-----LGYLPLAHVFELLSESVC----LLCGVAIGYSTPLTM 361
                F       P D++     +G++   H + L     C    L+      + TP  M
Sbjct: 284 YAATTFKYVFDYHPGDIYWCTADVGWV-TGHSYLLYGPLACGATTLMFEGVPNWPTPARM 342
Query: 362 IDTSSKIKRGTKGDASVLH--PTALTAVPLILDRIYKGVHEKVSRA-SPFKRALFAFAFE 418
                K +       ++L+  PTA+ A+    D+  +G      R        +   A+E
Sbjct: 343 CQVVDKHQ------VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 396
Query: 419 YKRKWAKRG-FRCPLID 434
           +   W K G  +CP++D
Sbjct: 397 W--YWKKIGKEKCPVVD 411

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 129/317 (40%), Gaps = 37/317 (11%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           S+ +++ +   F   L  LG +    V I+     E  +A  AC +       I+     
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNI---------LKLTPRVSTLIYMEDQLTSTDTT 251
           EA+A  I ++   +VIT  + +   R+I         LK  P V+++ ++     +    
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK-NPNVTSVEHVIVLKRTGSDI 227
Query: 252 NFKQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDN-MI 310
           ++++G ++  ++ +++                +D   I+YTSGSTG PKGV+ T    ++
Sbjct: 228 DWQEGRDLW-WRDLIEKASPEHQPEAM---NAEDPLFILYTSGSTGKPKGVLHTTGGYLV 283
Query: 311 STLKAFSDAVHIEPNDVF-----LGYLPLAHVFELLSESVC----LLCGVAIGYSTPLTM 361
                F       P D++     +G++   H + L     C    L+      + TP  M
Sbjct: 284 YAATTFKYVFDYHPGDIYWCTADVGWV-TGHSYLLYGPLACGATTLMFEGVPNWPTPARM 342
Query: 362 IDTSSKIKRGTKGDASVLH--PTALTAVPLILDRIYKGVHEKVSRA-SPFKRALFAFAFE 418
                K +       ++L+  PTA+ A+    D+  +G      R        +   A+E
Sbjct: 343 CQVVDKHQ------VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 396
Query: 419 YKRKWAKRG-FRCPLID 434
           +   W K G  +CP++D
Sbjct: 397 W--YWKKIGKEKCPVVD 411

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 129/317 (40%), Gaps = 37/317 (11%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           S+ +++ +   F   L  LG +    V I+     E  +A  AC +       I+     
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNI---------LKLTPRVSTLIYMEDQLTSTDTT 251
           EA+A  I ++   +VIT  + +   R+I         LK  P V+++ ++     +    
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK-NPNVTSVEHVIVLKRTGSDI 227
Query: 252 NFKQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDN-MI 310
           ++++G ++  ++ +++                +D   I+YTSGSTG PKGV+ T    ++
Sbjct: 228 DWQEGRDLW-WRDLIEKASPEHQPEAM---NAEDPLFILYTSGSTGKPKGVLHTTGGYLV 283
Query: 311 STLKAFSDAVHIEPNDVF-----LGYLPLAHVFELLSESVC----LLCGVAIGYSTPLTM 361
                F       P D++     +G++   H + L     C    L+      + TP  M
Sbjct: 284 YAATTFKYVFDYHPGDIYWCTADVGWV-TGHSYLLYGPLACGATTLMFEGVPNWPTPARM 342
Query: 362 IDTSSKIKRGTKGDASVLH--PTALTAVPLILDRIYKGVHEKVSRA-SPFKRALFAFAFE 418
                K +       ++L+  PTA+ A+    D+  +G      R        +   A+E
Sbjct: 343 CQVVDKHQ------VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 396
Query: 419 YKRKWAKRG-FRCPLID 434
           +   W K G  +CP++D
Sbjct: 397 W--YWKKIGKEKCPVVD 411

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 129/317 (40%), Gaps = 37/317 (11%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           S+ +++ +   F   L  LG +    V I+     E  +A  AC +       I+     
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNI---------LKLTPRVSTLIYMEDQLTSTDTT 251
           EA+A  I ++   +VIT  + +   R+I         LK  P V+++ ++     +    
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK-NPNVTSVEHVIVLKRTGSDI 227
Query: 252 NFKQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDN-MI 310
           ++++G ++  ++ +++                +D   I+YTSGSTG PKGV+ T    ++
Sbjct: 228 DWQEGRDLW-WRDLIEKASPEHQPEAM---NAEDPLFILYTSGSTGKPKGVLHTTGGYLV 283
Query: 311 STLKAFSDAVHIEPNDVF-----LGYLPLAHVFELLSESVC----LLCGVAIGYSTPLTM 361
                F       P D++     +G++   H + L     C    L+      + TP  M
Sbjct: 284 YAATTFKYVFDYHPGDIYWCTADVGWV-TGHSYLLYGPLACGATTLMFEGVPNWPTPARM 342
Query: 362 IDTSSKIKRGTKGDASVLH--PTALTAVPLILDRIYKGVHEKVSRA-SPFKRALFAFAFE 418
                K +       ++L+  PTA+ A+    D+  +G      R        +   A+E
Sbjct: 343 CQVVDKHQ------VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 396
Query: 419 YKRKWAKRG-FRCPLID 434
           +   W K G  +CP++D
Sbjct: 397 W--YWKKIGKEKCPVVD 411

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 129/317 (40%), Gaps = 37/317 (11%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           S+ +++ +   F   L  LG +    V I+     E  +A  AC +       I+     
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNI---------LKLTPRVSTLIYMEDQLTSTDTT 251
           EA+A  I ++   +VIT  + +   R+I         LK  P V+++ ++     +    
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK-NPNVTSVEHVIVLKRTGSDI 227
Query: 252 NFKQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDN-MI 310
           ++++G ++  ++ +++                +D   I+YTSGSTG PKGV+ T    ++
Sbjct: 228 DWQEGRDLW-WRDLIEKASPEHQPEAM---NAEDPLFILYTSGSTGKPKGVLHTTGGYLV 283
Query: 311 STLKAFSDAVHIEPNDVF-----LGYLPLAHVFELLSESVC----LLCGVAIGYSTPLTM 361
                F       P D++     +G++   H + L     C    L+      + TP  M
Sbjct: 284 YAATTFKYVFDYHPGDIYWCTADVGWV-TGHSYLLYGPLACGATTLMFEGVPNWPTPARM 342
Query: 362 IDTSSKIKRGTKGDASVLH--PTALTAVPLILDRIYKGVHEKVSRA-SPFKRALFAFAFE 418
                K +       ++L+  PTA+ A+    D+  +G      R        +   A+E
Sbjct: 343 CQVVDKHQ------VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWE 396
Query: 419 YKRKWAKRG-FRCPLID 434
           +   W K G  +CP++D
Sbjct: 397 W--YWKKIGKEKCPVVD 411

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 130/317 (41%), Gaps = 37/317 (11%)
Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           S+ +++ +   F   L  LG +    V I+     E  +A  AC +       I+     
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 168
Query: 201 EAIAHGINETEVNIVITTHD------LLPKFRNI---LKLTPRVSTLIYMEDQLTSTDTT 251
           EA+A  I ++   +VIT  +       +P  +N+   LK  P V+++ ++     +    
Sbjct: 169 EAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALK-NPNVTSVEHVIVLKRTGSDI 227
Query: 252 NFKQGIEIVPFKQIVKXXXXXXXXXXXXPPTPKDTAIIMYTSGSTGTPKGVVLTHDN-MI 310
           ++++G ++  ++ +++                +D   I+YTSGSTG PKGV+ T    ++
Sbjct: 228 DWQEGRDLW-WRDLIEKASPEHQPEAM---NAEDPLFILYTSGSTGKPKGVLHTTGGYLV 283
Query: 311 STLKAFSDAVHIEPNDVF-----LGYLPLAHVFELLSESVC----LLCGVAIGYSTPLTM 361
                F       P D++     +G++   H + L     C    L+      + TP  M
Sbjct: 284 YAATTFKYVFDYHPGDIYWCTADVGWV-TGHSYLLYGPLACGATTLMFEGVPNWPTPARM 342
Query: 362 IDTSSKIKRGTKGDASVLH--PTALTAVPLILDRIYKGVHEKVSRA-SPFKRALFAFAFE 418
                K +       ++L+  PTA+ A+    D+  +G      R        +   A+E
Sbjct: 343 CQVVDKHQ------VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 396
Query: 419 YKRKWAKRG-FRCPLID 434
           +   W K G  +CP++D
Sbjct: 397 W--YWKKIGKEKCPVVD 411

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 285 DTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSES 344
           D A +  + GSTG  K +  THD+ I +LK   +   ++ + V+L  LP+AH + L S  
Sbjct: 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPG 242
Query: 345 V 345
           V
Sbjct: 243 V 243

>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 281 PTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFEL 340
           P  +D A ++YTSG+TG PKGV + H N+++ L           +D +L +  L+  F +
Sbjct: 172 PGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWLLFHSLSFDFSV 231

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	504
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-39
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	2e-39
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-38
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	2e-37
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	1e-36
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	1e-36
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	3e-36
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	4e-34
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	2e-33
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	3e-31
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	6e-31
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	9e-28
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	4e-05
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	7e-27
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	8e-26
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	8e-26
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	9e-26
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	4e-25
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	7e-25
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	4e-21
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	4e-21
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	3e-13
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	3e-13
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	8e-13
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-12
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	2e-12
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	3e-11
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-11
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	9e-10
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	4e-04
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	4e-04

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  150 bits (380), Expect = 1e-39
 Identities = 74/370 (20%), Positives = 128/370 (34%), Gaps = 80/370 (21%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           S+ +  +++   GK L++ G      + + +E   E+ I   A     + V         
Sbjct: 54  SYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113

Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
             + H +  ++  IV ++   L K   + K    + T++ ++ +    D   ++      
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSK---VDYRGYQ------ 164

Query: 261 PFKQIVKRGSESGSRYEGSPPTP----KDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAF 316
                +KR +  G +            +  A+IM +SGSTG PKGV LTH+N+++     
Sbjct: 165 CLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHA 224

Query: 317 SDAV---HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYST-------PLTMIDTSS 366
            D +    + P    L  +P  H F +       L  +  G+           T + T  
Sbjct: 225 RDPIYGNQVSPGTAVLTVVPFHHGFGM----FTTLGYLICGFRVVMLTKFDEETFLKTLQ 280

Query: 367 KIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKR 426
             K            T++  VP +   + K   E +                      K 
Sbjct: 281 DYK-----------CTSVILVPTLFAILNK--SELL---------------------NKY 306

Query: 427 GFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDT-HELIKVCLCEKVIQGYGLTETT 485
                                 +  I SGGAPLS +    + +      V QGYGLTETT
Sbjct: 307 DLSN------------------LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETT 348

Query: 486 SCATVMHLND 495
           S   +    D
Sbjct: 349 SAIIITPEGD 358

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  149 bits (378), Expect = 2e-39
 Identities = 70/366 (19%), Positives = 116/366 (31%), Gaps = 72/366 (19%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           ++ +  + +    + ++  G    H +V+ +E   ++ +         + V        E
Sbjct: 52  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111

Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
             + + +N ++  +V  +   L K  N+ K  P +  +I M+     TD   F+     V
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDS---KTDYQGFQSMYTFV 168

Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV 320
                +  G         S    K  A+IM +SGSTG PKGV L H           D +
Sbjct: 169 --TSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI 226

Query: 321 ---HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYST-------PLTMIDTSSKIKR 370
               I P+   L  +P  H F +       L  +  G+             + +    K 
Sbjct: 227 FGNQIIPDTAILSVVPFHHGFGM----FTTLGYLICGFRVVLMYRFEEELFLRSLQDYK- 281

Query: 371 GTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRC 430
                       +   VP +     K     +                      K     
Sbjct: 282 ----------IQSALLVPTLFSFFAK--STLI---------------------DKYDLSN 308

Query: 431 PLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDT-HELIKVCLCEKVIQGYGLTETTSCAT 489
                             +  I SGGAPLS +    + K      + QGYGLTETTS   
Sbjct: 309 ------------------LHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL 350

Query: 490 VMHLND 495
           +    D
Sbjct: 351 ITPEGD 356

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  147 bits (373), Expect = 1e-38
 Identities = 65/418 (15%), Positives = 131/418 (31%), Gaps = 100/418 (23%)

Query: 101 VTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLG 160
             +F ++  +    I AE                      +F ++ +  +    G+   G
Sbjct: 29  AEKFGEKTAI----ISAEPKFPSEFPESM-----------NFLEICEVTKKLASGISRKG 73

Query: 161 QEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHD 220
                +V +      ++++   A ++     V I        + H +N++E   ++    
Sbjct: 74  VRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSM 133

Query: 221 LLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSP 280
           L   F+ +L+ T  V  +  +                E+    +++  GSE     + +P
Sbjct: 134 LYENFKPVLEKTG-VERVFVVGG--------------EVNSLSEVMDSGSEDFENVKVNP 178

Query: 281 PTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFEL 340
               D A+I YT G+TG PKGV+LTH N+ +     + A  +   D  +G +P+ H  E 
Sbjct: 179 EE--DVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEF 236

Query: 341 LSESVCLLCGVAIGYST-------PLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDR 393
                 +   V +G             + +   K K            T   AVP  L+ 
Sbjct: 237 ----GLVNLMVTVGNEYVVMGMFNQEMLAENIEKYK-----------GTFSWAVPPALNV 281

Query: 394 IYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLIL 453
           +   +                                       +          +++  
Sbjct: 282 LVNTLE-------------------------------SSNKTYDW--------SYLKVFA 302

Query: 454 SGGAPLSPDTHELIK-------VCLCEKVIQGYGLTETTSCATVMHLNDMGNINSNGL 504
           +G  P++P   E +             +  Q +G+TE     T      +    + G+
Sbjct: 303 TGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGV 360

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  143 bits (364), Expect = 2e-37
 Identities = 56/373 (15%), Positives = 106/373 (28%), Gaps = 75/373 (20%)

Query: 132 YVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPV 191
           Y+       ++ ++ + A  F   LR+LG  P   +++         +A        +  
Sbjct: 42  YIDDTGST-TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVP 100

Query: 192 VTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT 251
           V     L      + +  +    VI +  L+      L+        + +     S    
Sbjct: 101 VVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRL 160

Query: 252 NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIS 311
                     F++++   +      + +     D A  +Y+SGSTG PKG V TH N+  
Sbjct: 161 -------APLFEELIDAAAP---AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYW 210

Query: 312 TLKAFSDAVH-IEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYS--------TPLTMI 362
           T + ++  +  I  NDV      L   + L      L   +++G +        T   + 
Sbjct: 211 TAELYAKPILGIAENDVVFSAAKLFFAYGL---GNGLTFPLSVGATAILMAERPTADAIF 267

Query: 363 DTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRK 422
               + +           PT    VP +                     +          
Sbjct: 268 ARLVEHR-----------PTVFYGVPTLY------------------ANMLVSP-----N 293

Query: 423 WAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLT 482
              R                      +R+  S G  L  +  E        +++ G G T
Sbjct: 294 LPARADV------------------AIRICTSAGEALPREIGERFTAHFGCEILDGIGST 335

Query: 483 ETTSCATVMHLND 495
           E            
Sbjct: 336 EMLHIFLSNRAGA 348

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  141 bits (357), Expect = 1e-36
 Identities = 68/356 (19%), Positives = 109/356 (30%), Gaps = 82/356 (23%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           S+ ++   A      L + G +    V    E   E ++   A  +     + +      
Sbjct: 30  SYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTL 89

Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
             + + I + E  IV+           I          +  + + + TD           
Sbjct: 90  HELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTD----------- 138

Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV 320
                    + +   +        D A I+YTSG+TG  KG +L+HDN+ S      D  
Sbjct: 139 -------AAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW 191

Query: 321 HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYST-------PLTMIDTSSKIKRGTK 373
              P+DV +  LP+ H   L    V     +    S        P  ++D    + R   
Sbjct: 192 RFTPDDVLIHALPIYHTHGL---FVASNVTLFARGSMIFLPKFDPDKILDL---MAR--- 242

Query: 374 GDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLI 433
                   T L  VP    R+           SP              +  K        
Sbjct: 243 -------ATVLMGVPTFYTRLL---------QSP--------------RLTKETTG---- 268

Query: 434 DKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCAT 489
                          +RL +SG APL  DTH          V++ YG+TET    +
Sbjct: 269 --------------HMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTS 310

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  143 bits (363), Expect = 1e-36
 Identities = 62/362 (17%), Positives = 125/362 (34%), Gaps = 75/362 (20%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           +++ V+  +         LG      V++      E++++  A   +             
Sbjct: 90  TYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTP 149

Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
             IA     +   ++IT    + K + +      V   I   + +   +          +
Sbjct: 150 AEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEG--------CL 201

Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA- 319
            F ++ +  +E+    +    +P D   + Y+SG+TG PKGV+LTH  +++++    D  
Sbjct: 202 RFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGE 261

Query: 320 ---VHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYST-------PLTMIDTSSKIK 369
              ++   +DV L  LP+ H++ L   +  +LCG+ +G +           +++   + K
Sbjct: 262 NPNLYFHSDDVILCVLPMFHIYAL---NSIMLCGLRVGAAILIMPKFEINLLLELIQRCK 318

Query: 370 RGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFR 429
                       T    VP I+  I K                                 
Sbjct: 319 -----------VTVAPMVPPIVLAIAK--S------------------------------ 335

Query: 430 CPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDT-HELIKVCLCEKVIQGYGLTETTSCA 488
               +K             +R++ SG APL  +    +       K+ QGYG+TE     
Sbjct: 336 -SETEKYDL--------SSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVL 386

Query: 489 TV 490
            +
Sbjct: 387 AM 388

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  139 bits (354), Expect = 3e-36
 Identities = 65/363 (17%), Positives = 126/363 (34%), Gaps = 85/363 (23%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           ++  V   A     GL  +G +    +++F  +  E+++A      +   +         
Sbjct: 51  TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTP 110

Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTP-RVSTLIYMEDQLTSTDTTNFKQGIEI 259
             +A     +   ++IT      K ++  + +  +V  +    D                
Sbjct: 111 AELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPD--------------GC 156

Query: 260 VPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA 319
           + F ++ +      +       +P D   + Y+SG+TG PKGV+LTH  +I+++    D 
Sbjct: 157 LHFSELTQAD---ENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDG 213

Query: 320 ----VHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYST-------PLTMIDTSSKI 368
               ++    DV L  LP+ H++ L   +  +LCG+ +G            +++    K 
Sbjct: 214 DNPNLYFHSEDVILCVLPMFHIYAL---NSIMLCGLRVGAPILIMPKFEIGSLLGLIEKY 270

Query: 369 KRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGF 428
           K            +    VP ++  I K                                
Sbjct: 271 K-----------VSIAPVVPPVMMSIAK-------------------------------- 287

Query: 429 RCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDT-HELIKVCLCEKVIQGYGLTETTSC 487
             P +DK             +R+I SGGAPL  +    +       ++ QGYG+TE    
Sbjct: 288 -SPDLDKHDL--------SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPV 338

Query: 488 ATV 490
             +
Sbjct: 339 LAM 341

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  133 bits (338), Expect = 4e-34
 Identities = 71/391 (18%), Positives = 119/391 (30%), Gaps = 88/391 (22%)

Query: 114 QILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAET 173
            +L +     P           D    ++ Q+N  A      L +LG      V +    
Sbjct: 20  WMLRQRATVSPR-LQAYVEPSTDVRM-TYAQMNALANRCADVLTALGIAKGDRVALLMPN 77

Query: 174 RAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTP 233
             E+        K     V I   L    ++  ++++   +VI      P    I     
Sbjct: 78  SVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQAD 137

Query: 234 RVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTS 293
              T+       +  +                  R   + +          D   IMYTS
Sbjct: 138 PPGTVTDWIGADSLAE------------------RLRSAAADEPAVECGGDDNLFIMYTS 179

Query: 294 GSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAI 353
           G+TG PKGVV TH+++ S   +++  + +   D  L  LP+ HV  L      ++     
Sbjct: 180 GTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAAL----TTVIFSAMR 235

Query: 354 GYST-------PLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRAS 406
           G +           +      I                 AVP IL+ +            
Sbjct: 236 GVTLISMPQFDATKVWSL---IVEE--------RVCIGGAVPAILNFMR---------QV 275

Query: 407 PFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHEL 466
           P              ++A+                        R  ++GGAP+      L
Sbjct: 276 P--------------EFAELDA------------------PDFRYFITGGAPMPE---AL 300

Query: 467 IKVC--LCEKVIQGYGLTETTSCATVMHLND 495
           IK+      +V+QGY LTE+    T++   D
Sbjct: 301 IKIYAAKNIEVVQGYALTESCGGGTLLLSED 331

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  131 bits (332), Expect = 2e-33
 Identities = 69/375 (18%), Positives = 122/375 (32%), Gaps = 84/375 (22%)

Query: 132 YVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPV 191
              G   + ++  +  EA    K L++  Q  R  V ++ +   + +I   AC+  NI +
Sbjct: 20  ITDGQESY-TYQNLYCEASLLAKRLKAYQQS-R--VGLYIDNSIQSIILIHACWLANIEI 75

Query: 192 VTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLT--PRVSTLIYMEDQLTSTD 249
             I   L    + + +   +V ++  T  L  +   I+ L         I     L +T 
Sbjct: 76  AMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTM 135

Query: 250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNM 309
              +    E V          ES S    +     D A IM+TSG+TG  K V  T  N 
Sbjct: 136 GIQYDTSNETV-------VPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNH 188

Query: 310 ISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYST-------PLTMI 362
            ++     +++  + +  +L  LP+ H+  L      LL  V  G++           ++
Sbjct: 189 YASAIGCKESLGFDRDTNWLSVLPIYHISGL----SVLLRAVIEGFTVRIVDKFNAEQIL 244

Query: 363 DTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRK 422
                IK            T ++ VP  L+ + +         +                
Sbjct: 245 TM---IKNE--------RITHISLVPQTLNWLMQ--QGLHEPYN---------------- 275

Query: 423 WAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVC--LCEKVIQGYG 480
                                     ++ IL GGA LS     +I+        +   +G
Sbjct: 276 --------------------------LQKILLGGAKLSA---TMIETALQYNLPIYNSFG 306

Query: 481 LTETTSCATVMHLND 495
           +TET S         
Sbjct: 307 MTETCSQFLTATPEM 321

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  126 bits (319), Expect = 3e-31
 Identities = 57/370 (15%), Positives = 111/370 (30%), Gaps = 77/370 (20%)

Query: 133 VMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVV 192
           + G+ +  S+ ++N  A+     LR  G +P    ++     AE  I   A  K  +  V
Sbjct: 45  IDGERQL-SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPV 103

Query: 193 TIYATLGEEAIAHGINETEVNIVIT-----THDLLPKFRNILKLTPRVSTLIYMEDQLTS 247
               +     +    ++ E  ++I                 +     +  +  + D    
Sbjct: 104 LALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLND---- 159

Query: 248 TDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHD 307
           +   N +  I            +     +  +P    + A    + G+TGTPK +  TH+
Sbjct: 160 SGEHNLQDAI------------NHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHN 207

Query: 308 NMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSK 367
           +   +++   +         +L  +P AH + +   S     GV                
Sbjct: 208 DYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAM---SSPGSLGVF--------------- 249

Query: 368 IKRGTKGDASVLHPT--ALTAVPLILDRIYKGVHEKVSRAS---PFKRALFAFAFEYKRK 422
                 G   VL     A    PLI          +V+  +   P          E    
Sbjct: 250 ----LAGGTVVLAADPSATLCFPLIEK-------HQVNVTALVPPAVSLWLQALIE---G 295

Query: 423 WAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLT 482
            ++                       ++L+  GGA LS      I   +  ++ Q +G+ 
Sbjct: 296 ESRAQLA------------------SLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMA 337

Query: 483 ETTSCATVMH 492
           E     T + 
Sbjct: 338 EGLVNYTRLD 347

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  124 bits (314), Expect = 6e-31
 Identities = 71/365 (19%), Positives = 120/365 (32%), Gaps = 99/365 (27%)

Query: 133 VMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVV 192
             G+    ++ ++   A A    +          V ++A    E  +A  A     +  V
Sbjct: 43  RFGERSL-TYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAAV 96

Query: 193 TIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTN 252
            +    G++ +AH ++++  ++V+   D         +L P +  L  ++  + +     
Sbjct: 97  PLNPKSGDKELAHILSDSAPSLVLAPPDA--------ELPPALGALERVDVDVRARGAV- 147

Query: 253 FKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST 312
                                           D A+++YTSG+TG PKG V+    + +T
Sbjct: 148 ------------------------PEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATT 183

Query: 313 LKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYS-------TPLTMIDTS 365
           L A +DA      DV +  LPL HV  L    + +L  +  G S       +        
Sbjct: 184 LDALADAWQWTGEDVLVQGLPLFHVHGL---VLGILGPLRRGGSVRHLGRFSTEGAARE- 239

Query: 366 SKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAK 425
             +  G          T L  VP +  RI           +       A A         
Sbjct: 240 --LNDG---------ATMLFGVPTMYHRIA---------ETLPADPELAKAL-------- 271

Query: 426 RGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETT 485
                                   RL++SG A L    HE I      +VI+ YG+TET 
Sbjct: 272 ---------------------AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETL 310

Query: 486 SCATV 490
              +V
Sbjct: 311 MNTSV 315

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  115 bits (290), Expect = 9e-28
 Identities = 52/317 (16%), Positives = 96/317 (30%), Gaps = 43/317 (13%)

Query: 132 YVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPV 191
           +++      +       AE    GL   G      V I ++  +E +    A       +
Sbjct: 25  FMVDGVRL-THRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAIL 83

Query: 192 VTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT 251
           + +   L  + IA  + +   ++V+   D       +L     V     + D   S    
Sbjct: 84  LPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGD--GSGPFA 141

Query: 252 NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIS 311
            FK      PF                      D  +I++T+   G P+G +++  N++ 
Sbjct: 142 PFKDLASDTPF--------------SAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLI 187

Query: 312 TLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYST-------PLTMIDT 364
              +  DA  +   DV LG LPL HV  L      +L     G ++       P      
Sbjct: 188 AQSSLVDAWRLTEADVNLGMLPLFHVTGL----GLMLTLQQAGGASVIAAKFDPAQAARD 243

Query: 365 SSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWA 424
              I+            T +     +L  I        ++ +  +        E   ++ 
Sbjct: 244 ---IEAH--------KVTVMAEFAPMLGNILD--QAAPAQLASLRAVTGLDTPETIERFE 290

Query: 425 KRGFRCPLIDKVVFGQT 441
                        FGQ+
Sbjct: 291 ATCPNATFWA--TFGQS 305

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score = 44.8 bits (107), Expect = 4e-05
 Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)

Query: 448 RVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND 495
            +R +     P + +       C        +G +ET+  +T     D
Sbjct: 273 SLRAVTGLDTPETIE--RFEATCPNATFWATFGQSETSGLSTFAPYRD 318

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  113 bits (284), Expect = 7e-27
 Identities = 35/230 (15%), Positives = 83/230 (36%), Gaps = 23/230 (10%)

Query: 114 QILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAET 173
           +IL    +  P+  +    + G+ +  S+ +++  +      L   G       ++    
Sbjct: 34  RILTVGVQSHPH-SLA--IICGERQL-SYIELDRLSTNLATRLAEKGLGKGDTALVQLPN 89

Query: 174 RAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVIT-----THDLLPKFRNI 228
            AE+ I   A  K  + V+    +  +  +   I + +  ++I               ++
Sbjct: 90  VAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSL 149

Query: 229 LKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAI 288
             +      ++ +  Q T     ++ +              + + +  + S     + A 
Sbjct: 150 HDVNLSPEIILMLNHQATDFGLLDWIE--------------TPAETFVDFSSTPADEVAF 195

Query: 289 IMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVF 338
              + GSTGTPK +  TH++   +++A ++   +  N   L  LP  H F
Sbjct: 196 FQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNF 245

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  109 bits (275), Expect = 8e-26
 Identities = 63/388 (16%), Positives = 118/388 (30%), Gaps = 85/388 (21%)

Query: 114 QILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAET 173
           ++L     + P+               +  ++    EA    L + G  P+  V + A  
Sbjct: 6   EMLRRAATRAPD-HCALAVPARGLRL-THAELRARVEAVAARLHADGLRPQQRVAVVAPN 63

Query: 174 RAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTP 233
            A+ +IA  A  +       +   L    +A  I   E+   +       +  + +  + 
Sbjct: 64  SADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG--RQVADAIFQSG 121

Query: 234 RVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTS 293
             + +I++ D +   +                       G   E     P   A I YTS
Sbjct: 122 SGARIIFLGDLVRDGEPY-------------------SYGPPIEDPQREPAQPAFIFYTS 162

Query: 294 GSTGTPKGVVLTHDNMISTLKAFSDAVHIE--PNDVFLGYLPLAHVFELLSESVCLLCGV 351
           G+TG PK  ++      S +   S  V +    ++V LG +PL HV         L+  +
Sbjct: 163 GTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF---FAVLVAAL 219

Query: 352 AIGYST-------PLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSR 404
           A+  +        P+  +     +++           T+L A P  LD +          
Sbjct: 220 ALDGTYVVVEEFRPVDALQL---VQQE--------QVTSLFATPTHLDALA--------- 259

Query: 405 ASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTH 464
           A+                 A    +   +  V F                 GA +     
Sbjct: 260 AAA--------------AHAGSSLKLDSLRHVTFA----------------GATMPDAVL 289

Query: 465 ELIKVCLCEKVIQGYGLTETTSCATVMH 492
           E +   L  + +  YG TE  +   +  
Sbjct: 290 ETVHQHLPGEKVNIYGTTEAMNSLYMRQ 317

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  109 bits (274), Expect = 8e-26
 Identities = 70/399 (17%), Positives = 117/399 (29%), Gaps = 92/399 (23%)

Query: 121 EKQPNGRIF---KKYVMGDYEWR--SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRA 175
             QP+   F         D      +++Q+        + L   G      VVI A    
Sbjct: 35  RLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGL 93

Query: 176 EWMIAAQACFKQNIPVVTIYATLGE---EAIAHGINETEVNIVITTHDLLPKFRNILKLT 232
           E+++A     +     V +    G    E     ++++    ++TT   +      +   
Sbjct: 94  EYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARR 153

Query: 233 PRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYT 292
           P  S        +   D  +                  ++ + Y         TA + YT
Sbjct: 154 PGESPP-----SIIEVDLLD-----------------LDAPNGYTFKEDEYPSTAYLQYT 191

Query: 293 SGSTGTPKGVVLTHDNMISTLKAFSDAVHIE------PNDVFLGYLPLAHVFELLSESVC 346
           SGST TP GVV++H N+    +        +      PN   + +LP  H   L+     
Sbjct: 192 SGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVI---G 248

Query: 347 LLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLI-LDRI--YKGVHEKVS 403
           +   +  GY  P  +    S ++R                 P   +  +           
Sbjct: 249 ICAPILGGY--PAVLTSPVSFLQR-----------------PARWMHLMASDFHAFS--- 286

Query: 404 RASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKL-LGGRVRLILSGGAPLSPD 462
            A+P       FAFE                +          L G +  ILSG   +   
Sbjct: 287 -AAP------NFAFEL------------AARRTTDDDMAGRDL-GNILTILSGSERVQAA 326

Query: 463 T----HELIKVC-LCEKVIQ-GYGLTETTSCATVMHLND 495
           T     +      L E+VI+  Y L E T          
Sbjct: 327 TIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQ 365

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  109 bits (275), Expect = 9e-26
 Identities = 50/244 (20%), Positives = 87/244 (35%), Gaps = 29/244 (11%)

Query: 114 QILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAET 173
            +L +   K  + RI      G+  W S+ +++  A+    G + LG + +  VV+    
Sbjct: 29  DLLRDRAAKYGD-RIA--ITCGNTHW-SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPN 84

Query: 174 RAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVIT-----THDLLPKFRNI 228
             E+     A F+     V    +     I +     E    I        D     R +
Sbjct: 85  IKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQV 144

Query: 229 LKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAI 288
               P +  +I   +              E +P + +     +             D A 
Sbjct: 145 QSKLPTLKNIIVAGE------------AEEFLPLEDLHTEPVK------LPEVKSSDVAF 186

Query: 289 IMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESV--C 346
           +  + GSTG  K +  THD+ I +LK   +   ++ + V+L  LP+AH + L S  V   
Sbjct: 187 LQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGV 246

Query: 347 LLCG 350
           L  G
Sbjct: 247 LYAG 250

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  107 bits (268), Expect = 7e-25
 Identities = 73/384 (19%), Positives = 132/384 (34%), Gaps = 83/384 (21%)

Query: 121 EKQPNGRIFKKYVMGDYEWR-SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMI 179
              PN +    ++  + E   ++ Q++  A+A    L++ G +P   V++        + 
Sbjct: 22  LHSPNKKSCT-FLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQ 80

Query: 180 AAQACFKQNIPVVTIYATLGEEAIAH--GI-NETEVNIVITTHDLLPKFRN-ILKLTPRV 235
           A   C       V IY    E+ +     I   ++  IV+   D + KF    L   P+ 
Sbjct: 81  AFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKF 140

Query: 236 STLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGS 295
             +        + ++                       S ++ +     D A + YTSGS
Sbjct: 141 LKI-----PAIALESIE-----------------LNRSSSWQPTSIKSNDIAFLQYTSGS 178

Query: 296 TGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGY 355
           T  PKGV+++H N++  L     + H+    +   +LP  H   L+    C+L  +  G 
Sbjct: 179 TMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIG---CILTPIYGGI 235

Query: 356 STPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLI-LDRI--YKGVHEKVSRASPFKRAL 412
                M+   S ++                  PL  L  I  YK         SP     
Sbjct: 236 --QAIMMSPFSFLQN-----------------PLSWLKHITKYKATIS----GSP----- 267

Query: 413 FAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKL-LGGRVRLILSGGAPLSPDT----HELI 467
             FA++Y             + ++   + + L L        +G  P+  +T    ++  
Sbjct: 268 -NFAYDY------------CVKRIREEKKEGLDL-SSWVTAFNGAEPVREETMEHFYQAF 313

Query: 468 KVC-LCEKVIQ-GYGLTETTSCAT 489
           K     ++     YGL E T   T
Sbjct: 314 KEFGFRKEAFYPCYGLAEATLLVT 337

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 95.7 bits (239), Expect = 4e-21
 Identities = 23/198 (11%), Positives = 63/198 (31%), Gaps = 12/198 (6%)

Query: 135 GDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTI 194
           G+ +  +F  +   ++         G      V++  ++R ++        K     V  
Sbjct: 82  GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPA 141

Query: 195 YATLGEEAIAHGINETEVNIVITTHD--LLPKFRNILKLTPRVSTLIYMEDQLTSTDTTN 252
              L    I + I +  + +++   +  +  +          +                +
Sbjct: 142 THMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWID 201

Query: 253 FKQGIEIVPFKQIVKRGSESGSRYEGSPPT-PKDTAIIMYTSGSTGTPKGVVLTHDNMIS 311
           F++          ++  S    R  G   T  +D  ++ ++SG+ G PK V   +   + 
Sbjct: 202 FRK---------ELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLG 252

Query: 312 TLKAFSDAVHIEPNDVFL 329
            +       ++E + +  
Sbjct: 253 HILTAKYWQNVEDDGLHY 270

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 95.8 bits (239), Expect = 4e-21
 Identities = 22/197 (11%), Positives = 73/197 (37%), Gaps = 14/197 (7%)

Query: 135 GDYEWRSFNQVNDEAEAFGKGLR-SLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVT 193
           G     +F ++++ ++     L  + G +    V +      EW +    C +  +  + 
Sbjct: 69  GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMP 128

Query: 194 IYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNF 253
               +    I + +  ++   ++   +++ +   +    P +   + + ++         
Sbjct: 129 GTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGW---- 184

Query: 254 KQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTL 313
                 + FK+++   S     +       ++ + I +TSG++G PK    ++ ++    
Sbjct: 185 ------LNFKKLLNEAST---THHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKA 235

Query: 314 KAFSDAVHIEPNDVFLG 330
           K  +    ++ +D+   
Sbjct: 236 KMDAGWTGLQASDIMWT 252

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 71.5 bits (176), Expect = 3e-13
 Identities = 58/302 (19%), Positives = 98/302 (32%), Gaps = 88/302 (29%)

Query: 200 EEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEI 259
           E+ I++ + ++    ++T  ++  +      L    +TL   +        ++       
Sbjct: 550 EDRISYMLADSAAACLLTHQEMKEQAAE---LPYTGTTLFIDDQTRFEEQASD------- 599

Query: 260 VPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA 319
            P                 +   P D A IMYTSG+TG PKG + TH N+   +K   D 
Sbjct: 600 -P----------------ATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKH-VDY 641

Query: 320 VHIEPNDVFLGYLPLA---HVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDA 376
           +     D FL     A     F+       +L          L + D           + 
Sbjct: 642 MAFSDQDTFLSVSNYAFDAFTFDFY---ASMLNAAR------LIIAD-----------EH 681

Query: 377 SVLHPTALTAVPLILDRIYKGVHEKVSRAS--PFKRALFAFAFEYKRKWAKRGFRCPLID 434
           ++L    LT   LI       + E V+         ALF    +              + 
Sbjct: 682 TLLDTERLTD--LI-------LQENVNVMFATT---ALFNLLTDAGED------WMKGLR 723

Query: 435 KVVFGQTKKLLGGRVRLILSGGAPLSPDT-HELIKVCLCEKVIQGYGLTETTSCATVMHL 493
            ++F                GG   S     + +++    K+I  YG TE T  AT   +
Sbjct: 724 CILF----------------GGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVV 767

Query: 494 ND 495
           +D
Sbjct: 768 HD 769

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 70.6 bits (174), Expect = 3e-13
 Identities = 41/211 (19%), Positives = 74/211 (35%), Gaps = 59/211 (27%)

Query: 156 LRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATL--G-----------EEA 202
               G      V I  E ++  +             + I A L  G           +E 
Sbjct: 81  FIEKGIGKDTLVGIMME-KSIDL------------FIGILAVLKAGGAYVPIDIEYPKER 127

Query: 203 IAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPF 262
           I + +++++  +++T   L+    NI          I+ ED +   + TN          
Sbjct: 128 IQYILDDSQARMLLTQKHLVHLIHNI---QFNGQVEIFEEDTIKIREGTNLH-------- 176

Query: 263 KQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHI 322
                            P    D A ++YTSG+TG PKG +L H  + +    F +++++
Sbjct: 177 ----------------VPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNV 220

Query: 323 EPNDVFLGYLPL---AHVFELLSESVCLLCG 350
              D    +  +   A V+E+      LL G
Sbjct: 221 TEKDRIGQFASISFDASVWEMFM---ALLTG 248

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 69.5 bits (171), Expect = 8e-13
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 279 SPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPL---A 335
                 +   I+YTSGSTG PKGV +T++ ++S  K   +  +++   VFL   P     
Sbjct: 139 HAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDL 198

Query: 336 HVFELLSESVCLLCG 350
            V ++      L+ G
Sbjct: 199 SVMDIYP---SLVTG 210

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 68.3 bits (168), Expect = 2e-12
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 279 SPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLA--- 335
                 +T  I+YTSGSTG PKGV ++  N+ S          +    +FL   P +   
Sbjct: 138 QWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDL 197

Query: 336 HVFELLSESVCLLCG 350
            V +L     CL  G
Sbjct: 198 SVMDLYP---CLQSG 209

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 68.3 bits (168), Expect = 2e-12
 Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 7/76 (9%)

Query: 278 GSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLA-- 335
                    A I ++SG+TG PK +  TH  +          +   P   FL   PL+  
Sbjct: 158 RPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFD 216

Query: 336 -HVFELLSESVCLLCG 350
               E+      LL G
Sbjct: 217 AATLEIW---GALLNG 229

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 65.0 bits (159), Expect = 3e-11
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 14/83 (16%)

Query: 279 SPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAF--------SDAVHIEPNDVFLG 330
           +       A ++YTSGSTGTPKGV ++  N+ S   A+          ++ +     FL 
Sbjct: 170 NNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLC 229

Query: 331 YLPL---AHVFELLSESVCLLCG 350
                   H+ E+    +    G
Sbjct: 230 LASRAFDVHIGEMF---LAWRFG 249

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 64.1 bits (157), Expect = 4e-11
 Identities = 36/213 (16%), Positives = 60/213 (28%), Gaps = 63/213 (29%)

Query: 156 LRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATL--G-----------EEA 202
           + SL    +  V++F   +   M            + T  A    G            E 
Sbjct: 46  IDSLALLAKSPVLVFGA-QTYDM------------LATFVALTKSGHAYIPVDVHSAPER 92

Query: 203 IAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPF 262
           I   I   + +++I   +       I      + +L  +E    +               
Sbjct: 93  ILAIIEIAKPSLIIAIEEFPLTIEGI-----SLVSLSEIESAKLAEMPYE---------- 137

Query: 263 KQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD--AV 320
                                 D   I++TSG+TG PKGV ++HDN++S      +  A 
Sbjct: 138 --------------RTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAF 183

Query: 321 HIEPNDVFLGYLPL---AHVFELLSESVCLLCG 350
            +      L   P      V         L  G
Sbjct: 184 DVPKQPQMLAQPPYSFDLSVMYWAP---TLALG 213

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 62.5 bits (153), Expect = 1e-10
 Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 20/143 (13%)

Query: 198 LGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGI 257
           L  + IA+ +N  E  +++   +LLP    I      V   + M+++             
Sbjct: 106 LSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLA------ 159

Query: 258 EIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIM-YTSGSTGTPKGVVLTH-DNMISTL-K 314
               +++ +   ++           P+  A  M YT+G+TG PKGVV +H   ++ +L  
Sbjct: 160 ----YEEALGEEADP-------VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAA 208

Query: 315 AFSDAVHIEPNDVFLGYLPLAHV 337
           +  D   +   DV L  +P+ HV
Sbjct: 209 SLVDGTALSEKDVVLPVVPMFHV 231

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 3e-10
 Identities = 72/405 (17%), Positives = 126/405 (31%), Gaps = 116/405 (28%)

Query: 31  AFVCDIITYPVYLFLQRPWEKKSLSSKKKAEII-SKDNKSVTIR---SISGPQENHIRLI 86
           AFV +     V         K  LS ++   II SKD  S T+R   ++   QE  ++  
Sbjct: 28  AFVDNFDCKDVQDMP-----KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82

Query: 87  RDGVDTMEKVLR----YVVTRFSD---QRCLGTRQILAEEDEKQPNGRIFKKY-VMGDYE 138
                 +E+VLR    ++++       Q  + TR  + + D    + ++F KY V     
Sbjct: 83  ------VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV----- 131

Query: 139 WRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWM-------IAAQACFKQNIPV 191
            R             + L  L   P  NV+I        +       +A   C   +  V
Sbjct: 132 SRL-----QPYLKLRQALLEL--RPAKNVLIDG------VLGSGKTWVALDVC--LSYKV 176

Query: 192 VT-----IY-ATLGEEAIAHGI------------------NETEVNIVITTHDLLPKFRN 227
                  I+   L        +                  ++   NI +  H +  + R 
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 228 ILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTA 287
           +LK  P  + L+ + +   +     F    +I     ++               T +   
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI-----LL---------------TTRFKQ 276

Query: 288 IIMYTSGSTGTPKGVV-----LTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLS 342
           +  + S +T T   +      LT D            +   P D     LP     E+L+
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDE---VKSLLLKYLDCRPQD-----LPR----EVLT 324

Query: 343 ESVCLLCGVAIGYSTPLTMID-----TSSKIKRGTKGDASVLHPT 382
            +   L  +A      L   D        K+    +   +VL P 
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 59.4 bits (143), Expect = 9e-10
 Identities = 31/215 (14%), Positives = 60/215 (27%), Gaps = 39/215 (18%)

Query: 287 AIIMYTSGSTGTPKGVVLTHDNMISTL---KAFSDAVHIEPNDVFLGYLPL-AHVFELLS 342
             +  + G+TG PK VV     + + +    +        P+   L  +P   H+   ++
Sbjct: 94  PQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAIN 153

Query: 343 ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKV 402
           +   L  G  + +S  +        +  G            +  V   L        + +
Sbjct: 154 KERALRLG-GMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMN------QDI 206

Query: 403 SR---ASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPL 459
                  P  R L            KR      +               +  I  GG  L
Sbjct: 207 RFLVTTPPVLREL-----------LKRPEVVLQMK------------QSLAQITLGGTEL 243

Query: 460 SPDTHELI--KVCLCEKVIQGYGLTETTSCATVMH 492
           + D  + I  ++    +    YG T     +  + 
Sbjct: 244 NLDEIKFIASEILPDCEFSASYGSTSALGVSRSLL 278

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 11/46 (23%)

Query: 289 IMYTSGSTGTPKGVV------LTHDNMISTLKAFSDAVHIEPNDVF 328
           ++YTSGSTG PKGV       L    +  T++   D       DVF
Sbjct: 267 LLYTSGSTGAPKGVQHSTAGYLLGALL--TMRYTFD---THQEDVF 307

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 11/46 (23%)

Query: 289 IMYTSGSTGTPKGVV------LTHDNMISTLKAFSDAVHIEPNDVF 328
           I+YTSGSTG PKGV+      L +     T K   D     P D++
Sbjct: 261 ILYTSGSTGKPKGVLHTTGGYLVYAAT--TFKYVFD---YHPGDIY 301

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	504
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.94
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.88
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.88
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.87
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.87
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	92.68
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	92.52
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	91.89

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=1.8e-45  Score=387.25  Aligned_cols=328  Identities=21%  Similarity=0.238  Sum_probs=261.1

Q ss_pred             cCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy6874          87 RDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHN  166 (504)
Q Consensus        87 ~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~  166 (504)
                      .+...|+.++|++.++++|+++|+.+.                     +..+++||+||.++++++|++|+++|+++||+
T Consensus        12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~---------------------~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~   70 (517)
T 3r44_A           12 DDKMKNIGWMLRQRATVSPRLQAYVEP---------------------STDVRMTYAQMNALANRCADVLTALGIAKGDR   70 (517)
T ss_dssp             CGGGGCHHHHHHHHHHHSTTSEEEEEG---------------------GGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred             cccccCHHHHHHHHHHhCCCCeEEEeC---------------------CcCceeeHHHHHHHHHHHHHHHHHcCCCCcCE
Confidence            445679999999999999999999642                     22258999999999999999999999999999


Q ss_pred             EEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCC
Q psy6874         167 VVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLT  246 (504)
Q Consensus       167 Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~  246 (504)
                      |+++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+..+....+....++....   
T Consensus        71 V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---  147 (517)
T 3r44_A           71 VALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG---  147 (517)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEE---
T ss_pred             EEEEcCCCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccC---
Confidence            99999999999999999999999999999999999999999999999999998877766665544333221111110   


Q ss_pred             cccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCc
Q psy6874         247 STDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPND  326 (504)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d  326 (504)
                                  ...+.+.......   ..+.....++|+++|+|||||||.||||+++|+++.+.+......+++.++|
T Consensus       148 ------------~~~~~~~~~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d  212 (517)
T 3r44_A          148 ------------ADSLAERLRSAAA---DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRD  212 (517)
T ss_dssp             ------------HHHHHHHHHHCCC---CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTC
T ss_pred             ------------cccHHHHhhccCc---CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCC
Confidence                        0123333332221   2334456789999999999999999999999999999999988888999999


Q ss_pred             EEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccC
Q psy6874         327 VFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRAS  406 (504)
Q Consensus       327 ~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~  406 (504)
                      ++++++|++|++++...+.+++.|+++++.+.......        ++.++++++|++.++|+++..+.+...       
T Consensus       213 ~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~-------  277 (517)
T 3r44_A          213 RLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKV--------WSLIVEERVCIGGAVPAILNFMRQVPE-------  277 (517)
T ss_dssp             EEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHH--------HHHHHHTTCCEEEECHHHHHHHHHSHH-------
T ss_pred             EEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCCHHHH--------HHHHHHhCCeEEEeHHHHHHHHHhCcc-------
Confidence            99999999999999876666669999998865433222        335889999999999999998876321       


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccccccc
Q psy6874         407 PFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTS  486 (504)
Q Consensus       407 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~  486 (504)
                                                        ......++||.+++||+++++++.+.++.. +++++++||+||+++
T Consensus       278 ----------------------------------~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~  322 (517)
T 3r44_A          278 ----------------------------------FAELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCG  322 (517)
T ss_dssp             ----------------------------------HHHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTT
T ss_pred             ----------------------------------cccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeeccccccc
Confidence                                              112233689999999999999999999886 999999999999988


Q ss_pred             ceeecccCC-CCCccCCC
Q psy6874         487 CATVMHLND-MGNINSNG  503 (504)
Q Consensus       487 ~~~~~~~~d-~~~~~s~G  503 (504)
                      .++.....+ ....+++|
T Consensus       323 ~~~~~~~~~~~~~~~~~G  340 (517)
T 3r44_A          323 GGTLLLSEDALRKAGSAG  340 (517)
T ss_dssp             CEEEECGGGTTTTTTCCB
T ss_pred             ceeecCCccccccCCCCC
Confidence            777665443 34455555

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=5.5e-45  Score=386.46  Aligned_cols=334  Identities=18%  Similarity=0.261  Sum_probs=269.4

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..|+.++|++.++++||++|+.+.+      ..         ...+..+++||+||.++++++|++|++.|+++||+|+|
T Consensus        18 ~~~l~~~l~~~a~~~p~~~A~~~~~------~~---------~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i   82 (549)
T 3g7s_A           18 KISLADRIDAAAEKFGEKTAIISAE------PK---------FPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGV   82 (549)
T ss_dssp             CCCTTHHHHHHHHHHTTSEEEEEES------SC---------CCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             CCCHHHHHHHHHHhCCCceEEEeCC------Cc---------ccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            4689999999999999999997542      00         01123468999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD  249 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~  249 (504)
                      +++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.......+ ++.++..+..     
T Consensus        83 ~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----  156 (549)
T 3g7s_A           83 CIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE-----  156 (549)
T ss_dssp             ECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETCS-----
T ss_pred             ECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCCC-----
Confidence            9999999999999999999999999999999999999999999999999988877777665544 5556655432     


Q ss_pred             ccccCCCceeeehhHHHhcccccCCCCCCCCCCC-CCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEE
Q psy6874         250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTP-KDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVF  328 (504)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~  328 (504)
                               ...+.++.......   .......+ +|+++|+|||||||.||||+++|.++.+.+......+++.++|++
T Consensus       157 ---------~~~~~~~~~~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~  224 (549)
T 3g7s_A          157 ---------VNSLSEVMDSGSED---FENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTI  224 (549)
T ss_dssp             ---------SSCHHHHHHHSCSC---CCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEE
T ss_pred             ---------CcCHHHHHhcCccc---cccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEE
Confidence                     23466665544321   12223333 899999999999999999999999999999988888899999999


Q ss_pred             EEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChH
Q psy6874         329 LGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPF  408 (504)
Q Consensus       329 l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~  408 (504)
                      ++++|++|.+++...+.++..|+++++.+.......        ++.++++++|++.++|+++..+.+........    
T Consensus       225 ~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~----  292 (549)
T 3g7s_A          225 VGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEML--------AENIEKYKGTFSWAVPPALNVLVNTLESSNKT----  292 (549)
T ss_dssp             ECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHH--------HHHHHHTTCCEEEECHHHHHHHHHHHHHSCCC----
T ss_pred             EEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHH--------HHHHHHhCCeEEEeCCHHHHHHHhhhhhhccc----
Confidence            999999999998887889999999999764433222        33588999999999999999998753221100    


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHH----hC---Cceeeeccc
Q psy6874         409 KRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVC----LC---EKVIQGYGL  481 (504)
Q Consensus       409 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~----~~---~~v~~~YG~  481 (504)
                                                         ...+++|.+++||+++++++.+.++..    ++   ++++++||+
T Consensus       293 -----------------------------------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~  337 (549)
T 3g7s_A          293 -----------------------------------YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGM  337 (549)
T ss_dssp             -----------------------------------CCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEEC
T ss_pred             -----------------------------------CCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEec
Confidence                                               112689999999999999999999877    56   899999999


Q ss_pred             cccccceeecccCCCCCccCCC
Q psy6874         482 TETTSCATVMHLNDMGNINSNG  503 (504)
Q Consensus       482 TEt~~~~~~~~~~d~~~~~s~G  503 (504)
                      ||+++.++.....+....+++|
T Consensus       338 TE~~~~~~~~~~~~~~~~~~~G  359 (549)
T 3g7s_A          338 TEACPMVTTNPPLRLDKSTTQG  359 (549)
T ss_dssp             GGGSSEEEECCGGGGGGTTSCC
T ss_pred             cccchhhhcCCccccCcCCCcc
Confidence            9998877776554434445555

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=6e-45  Score=386.23  Aligned_cols=337  Identities=22%  Similarity=0.263  Sum_probs=265.4

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..|+.++|.+.++++|+++|+....                  .....+.+||+||.++++++|++|+++|+++||+|+|
T Consensus        19 ~~tl~~~l~~~a~~~p~~~a~~a~~------------------~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i   80 (550)
T 3rix_A           19 DGTAGEQLHKAMKRYALVPGTIAFT------------------DAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVV   80 (550)
T ss_dssp             CSCHHHHHHHHHHHHHTSTTCEEEE------------------ETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred             cCCHHHHHHHHHHhCCCCceEEEee------------------ecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence            4689999999999999999985210                  0012367999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD  249 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~  249 (504)
                      +++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+..+....+.++.++.++....   
T Consensus        81 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  157 (550)
T 3rix_A           81 CSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD---  157 (550)
T ss_dssp             ECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSC---
T ss_pred             EcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCcc---
Confidence            99999999999999999999999999999999999999999999999999988888887778888888887765311   


Q ss_pred             ccccCCCceeeehhHHHhcccccCC----CCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhc---cCC
Q psy6874         250 TTNFKQGIEIVPFKQIVKRGSESGS----RYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA---VHI  322 (504)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~  322 (504)
                            .....++.++.........    ..+.....++|+++|+|||||||.||||+++|+++.+.+......   ..+
T Consensus       158 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~  231 (550)
T 3rix_A          158 ------YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQI  231 (550)
T ss_dssp             ------BTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCC
T ss_pred             ------ccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccC
Confidence                  1123456666544332110    111222345789999999999999999999999999888776654   477


Q ss_pred             CCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHH
Q psy6874         323 EPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKV  402 (504)
Q Consensus       323 ~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~  402 (504)
                      .++|++++++|++|++++...+.+++.|+++++.+.......        ++.++++++|++.++|+++..+.+...   
T Consensus       232 ~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~---  300 (550)
T 3rix_A          232 IPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELF--------LRSLQDYKIQSALLVPTLFSFFAKSTL---  300 (550)
T ss_dssp             CTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHH--------HHHHHHTTCSEEEECHHHHHHHHHCCG---
T ss_pred             CCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHH--------HHHHHHcCCeEEEeCcHHHHHHHhCcc---
Confidence            899999999999999999888899999999999865432222        335889999999999999998876310   


Q ss_pred             hccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCc-eeeeccc
Q psy6874         403 SRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEK-VIQGYGL  481 (504)
Q Consensus       403 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~-v~~~YG~  481 (504)
                                                    .+        ....++||.+++||+++++++.++++..++++ ++++||+
T Consensus       301 ------------------------------~~--------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~  342 (550)
T 3rix_A          301 ------------------------------ID--------KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGL  342 (550)
T ss_dssp             ------------------------------GG--------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEEC
T ss_pred             ------------------------------cc--------ccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCc
Confidence                                          11        11226899999999999999999999999875 9999999


Q ss_pred             cccccceeecccCCCCCccCCC
Q psy6874         482 TETTSCATVMHLNDMGNINSNG  503 (504)
Q Consensus       482 TEt~~~~~~~~~~d~~~~~s~G  503 (504)
                      ||+++.++.....+ ...+++|
T Consensus       343 TE~~~~~~~~~~~~-~~~~~vG  363 (550)
T 3rix_A          343 TETTSAILITPEGD-DKPGAVG  363 (550)
T ss_dssp             GGGSSEEEECCTTC-CCTTEEE
T ss_pred             CccccceecCCCCC-CCCCCcc
Confidence            99987777665433 3344444

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=4.7e-45  Score=386.42  Aligned_cols=316  Identities=16%  Similarity=0.143  Sum_probs=256.6

Q ss_pred             CCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEE
Q psy6874          89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVV  168 (504)
Q Consensus        89 ~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Va  168 (504)
                      ...|+.++|++.++++||++|+.+.                       .+.+||+||.++++++|++|+++|+++||+|+
T Consensus        28 ~~~tl~~~l~~~a~~~p~~~Al~~~-----------------------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~   84 (544)
T 3o83_A           28 IDQPLTRILTVGVQSHPHSLAIICG-----------------------ERQLSYIELDRLSTNLATRLAEKGLGKGDTAL   84 (544)
T ss_dssp             CCCCTTHHHHHHHHHCTTSEEEEET-----------------------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEE
T ss_pred             CCCCHHHHHHHHHHhCCCceEEEcC-----------------------CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEE
Confidence            3468999999999999999999632                       26899999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch-----hHHHHHhhcCCCceEEEEEcC
Q psy6874         169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL-----PKFRNILKLTPRVSTLIYMED  243 (504)
Q Consensus       169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~  243 (504)
                      ++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..     ..+..+....+..+.++..+.
T Consensus        85 i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (544)
T 3o83_A           85 VQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNH  164 (544)
T ss_dssp             ECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETC
T ss_pred             EECCCCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecC
Confidence            999999999999999999999999999999999999999999999999988653     333444445556666666544


Q ss_pred             CCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCC
Q psy6874         244 QLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIE  323 (504)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~  323 (504)
                      ..            ....+.++.......  ........++|+++|+|||||||.||||+++|.++.+.+......+++.
T Consensus       165 ~~------------~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~  230 (544)
T 3o83_A          165 QA------------TDFGLLDWIETPAET--FVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLN  230 (544)
T ss_dssp             CT------------TSEEHHHHHHSCCSS--CCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCC
T ss_pred             Cc------------cccchhhhhhccccc--ccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCC
Confidence            30            112344444332221  2222445679999999999999999999999999999999988889999


Q ss_pred             CCcEEEEecChHHHHHHHH--HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHH
Q psy6874         324 PNDVFLGYLPLAHVFELLS--ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEK  401 (504)
Q Consensus       324 ~~d~~l~~lPl~h~~~~~~--~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~  401 (504)
                      ++|++++++|++|.+++..  .+.++..|+++++.+.......        ++.++++++|++.++|+++..+.+.....
T Consensus       231 ~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  302 (544)
T 3o83_A          231 SNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNC--------FSIIQRHQVNMASLVPSAVIMWLEKAAQY  302 (544)
T ss_dssp             TTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHH--------HHHHHHHTCCEEEECHHHHHHHHHHHTTT
T ss_pred             CCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHH--------HHHHHHHCCCEEEechHHHHHHHhchhhc
Confidence            9999999999999999874  7789999999999866433222        33588999999999999999987742211


Q ss_pred             HhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccc
Q psy6874         402 VSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGL  481 (504)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~  481 (504)
                      .                                         ...++||.+++||+++++++.++++..++++++++||+
T Consensus       303 ~-----------------------------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~  341 (544)
T 3o83_A          303 K-----------------------------------------DQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGM  341 (544)
T ss_dssp             H-----------------------------------------HHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEEC
T ss_pred             c-----------------------------------------ccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeecc
Confidence            0                                         01168999999999999999999999999999999999


Q ss_pred             cccccceee
Q psy6874         482 TETTSCATV  490 (504)
Q Consensus       482 TEt~~~~~~  490 (504)
                      ||+++.++.
T Consensus       342 TE~~~~~~~  350 (544)
T 3o83_A          342 AEGLVNYTR  350 (544)
T ss_dssp             TTSCEEECC
T ss_pred             ccccceeec
Confidence            998754443

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=3.1e-44  Score=379.89  Aligned_cols=319  Identities=20%  Similarity=0.229  Sum_probs=260.5

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..|+.++|++.++++||++|+.+.+                   .++.+++||+||.++++++|++|+++|+++||+|++
T Consensus        17 ~~~l~~~l~~~a~~~p~~~a~~~~~-------------------~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i   77 (541)
T 1v25_A           17 ELNLWDFLERAAALFGRKEVVSRLH-------------------TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVAT   77 (541)
T ss_dssp             CCCTHHHHHHHHHHSTTCEEEEECT-------------------TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             CCCHHHHHHHHHHhCCCceEEEEec-------------------CCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            4589999999999999999996421                   123478999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD  249 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~  249 (504)
                      +++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+..+....+.++.++.++...    
T Consensus        78 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  153 (541)
T 1v25_A           78 LGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKA----  153 (541)
T ss_dssp             ECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCC----
T ss_pred             EcCCcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCC----
Confidence            9999999999999999999999999999999999999999999999999988777777666677777777665431    


Q ss_pred             ccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhh--hhccCCCCCcE
Q psy6874         250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAF--SDAVHIEPNDV  327 (504)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~d~  327 (504)
                          +.  ....++++.....    .  .....++++++|+|||||||.||||+++|+|+++.....  ...+.++++|+
T Consensus       154 ----~~--~~~~~~~~~~~~~----~--~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~  221 (541)
T 1v25_A          154 ----PE--GYLAYEEALGEEA----D--PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDV  221 (541)
T ss_dssp             ----CT--TCEEHHHHCCSCC----C--CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCE
T ss_pred             ----Cc--ccccHHHHhhccC----C--cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCE
Confidence                00  2345665543221    1  133467899999999999999999999999998877653  34567889999


Q ss_pred             EEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccCh
Q psy6874         328 FLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASP  407 (504)
Q Consensus       328 ~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~  407 (504)
                      +++++|++|++++...+.+++.|+++++.+..  .+....     ++.++++++|++.++|+++..+.+.....      
T Consensus       222 ~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~--~~~~~~-----~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------  288 (541)
T 1v25_A          222 VLPVVPMFHVNAWCLPYAATLVGAKQVLPGPR--LDPASL-----VELFDGEGVTFTAGVPTVWLALADYLEST------  288 (541)
T ss_dssp             EEECSCTTSHHHHTHHHHHHHHTCEEEECTTC--CSHHHH-----HHHHHHTTCCEEEECHHHHHHHHHHHHHH------
T ss_pred             EEEeccchhhhHHHHHHHHHhcCceEEeeCCC--CCHHHH-----HHHHHhcCeeEEecchHHHHHHHhhhhcc------
Confidence            99999999999987778899999999997632  122211     33588999999999999999997753221      


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccc
Q psy6874         408 FKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSC  487 (504)
Q Consensus       408 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~  487 (504)
                                                         ....++||.+++||+++++++.+++ ..+|++++++||+||+++.
T Consensus       289 -----------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~  332 (541)
T 1v25_A          289 -----------------------------------GHRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPV  332 (541)
T ss_dssp             -----------------------------------TCCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSE
T ss_pred             -----------------------------------CCcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccc
Confidence                                               1112689999999999999999999 5679999999999999877


Q ss_pred             eeecc
Q psy6874         488 ATVMH  492 (504)
Q Consensus       488 ~~~~~  492 (504)
                      ++...
T Consensus       333 ~~~~~  337 (541)
T 1v25_A          333 VVQNF  337 (541)
T ss_dssp             EEECC
T ss_pred             eeccc
Confidence            66653

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=4.5e-44  Score=381.28  Aligned_cols=335  Identities=13%  Similarity=0.091  Sum_probs=265.5

Q ss_pred             CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Q psy6874          91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIF  170 (504)
Q Consensus        91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~  170 (504)
                      ....++|++.++++||++|+.+.+                  ..++.+++||+||.++++++|++|+++|+++||+|+|+
T Consensus        56 n~~~~~l~~~a~~~pd~~Al~~~~------------------~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~  117 (580)
T 3etc_A           56 NFAYDVVDVYARDSPEKLAMIWCD------------------DYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLT  117 (580)
T ss_dssp             CHHHHTHHHHHHHCTTCEEEEEEE------------------SSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             hHHHHHHHHHHhhCCCCEEEEEEc------------------CCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            345699999999999999997542                  12345789999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch--hHHHHHhhcCCCc-eEEEEEcCCCCc
Q psy6874         171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL--PKFRNILKLTPRV-STLIYMEDQLTS  247 (504)
Q Consensus       171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~l-~~ii~~~~~~~~  247 (504)
                      ++|++||+++++||+++|++++|+++.++.+++.+++++++++++|++.+..  +.+.++...++.+ ..++.++...  
T Consensus       118 ~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  195 (580)
T 3etc_A          118 LKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDV--  195 (580)
T ss_dssp             CTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSC--
T ss_pred             cCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCcc--
Confidence            9999999999999999999999999999999999999999999999988765  6666666666665 5555554320  


Q ss_pred             ccccccCCCceeeehhHHHhcccccCCCCCC--CCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCC
Q psy6874         248 TDTTNFKQGIEIVPFKQIVKRGSESGSRYEG--SPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPN  325 (504)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~  325 (504)
                              ...+..+.+......... ..+.  ....++|+++|+|||||||.||||+++|.++++.+........+.++
T Consensus       196 --------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~  266 (580)
T 3etc_A          196 --------LEGWIDFRKELEESSPIF-ERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDD  266 (580)
T ss_dssp             --------CTTCEEHHHHHHHSCSCC-CCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTT
T ss_pred             --------ccccccHHHHHhhCCccc-ccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCC
Confidence                    113456666665443221 1111  24578999999999999999999999999999888777677789999


Q ss_pred             cEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhc
Q psy6874         326 DVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSR  404 (504)
Q Consensus       326 d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~  404 (504)
                      |++++..|++|..+++. ++.++..|+++++.+... ++....     ++.++++++|+++++|++++.+.+.   .   
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~-~~~~~~-----~~~i~~~~vt~~~~~P~~~~~l~~~---~---  334 (580)
T 3etc_A          267 GLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDR-FEAKNM-----LEKASKYGVTTFCAPPTIYRFLIKE---D---  334 (580)
T ss_dssp             CEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSS-CCHHHH-----HHHHHHHTCCEEEECHHHHHHHHTS---C---
T ss_pred             ceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCC-CCHHHH-----HHHHHHHCCeEEEccHHHHHHHHhc---c---
Confidence            99999999999988875 678899999998874322 121111     3358899999999999999888652   0   


Q ss_pred             cChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccccc
Q psy6874         405 ASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTET  484 (504)
Q Consensus       405 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt  484 (504)
                                                          ......++||.+++||+++++++.++++..+|++++++||+||+
T Consensus       335 ------------------------------------~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~  378 (580)
T 3etc_A          335 ------------------------------------LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTET  378 (580)
T ss_dssp             ------------------------------------C---CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTS
T ss_pred             ------------------------------------cccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccc
Confidence                                                00112368999999999999999999999899999999999999


Q ss_pred             ccceeecccCCCCCccCCC
Q psy6874         485 TSCATVMHLNDMGNINSNG  503 (504)
Q Consensus       485 ~~~~~~~~~~d~~~~~s~G  503 (504)
                      ++.++..+.. ....+++|
T Consensus       379 ~~~~~~~~~~-~~~~~~~G  396 (580)
T 3etc_A          379 VVTIATFPWM-EPKPGSIG  396 (580)
T ss_dssp             SCCEECCTTS-CCCTTCCB
T ss_pred             cceeecCCCC-CCCCCccc
Confidence            7665554433 34455665

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=6.1e-45  Score=385.11  Aligned_cols=307  Identities=19%  Similarity=0.225  Sum_probs=250.9

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..|+.++|++.++++||++|+.+.                       .+++||+||.++++++|++|+++|+++||+|++
T Consensus        24 ~~tl~~~l~~~a~~~p~~~A~~~~-----------------------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i   80 (539)
T 1mdb_A           24 GETFGDLLRDRAAKYGDRIAITCG-----------------------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVV   80 (539)
T ss_dssp             SCCHHHHHHHHHHHHTTSEEEEET-----------------------TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEeC-----------------------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            358999999999999999999632                       267999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch-----hHHHHHhhcCCCceEEEEEcCC
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL-----PKFRNILKLTPRVSTLIYMEDQ  244 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~~  244 (504)
                      +++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++..     +.+..+....+.++.++..++.
T Consensus        81 ~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (539)
T 1mdb_A           81 QLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA  160 (539)
T ss_dssp             CCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC
T ss_pred             EcCCcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc
Confidence            99999999999999999999999999999999999999999999999987632     2333444456666666655432


Q ss_pred             CCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCC
Q psy6874         245 LTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEP  324 (504)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~  324 (504)
                      .               .+.++......   ........++|+++|+|||||||.||||+++|+|+.+.+......+++.+
T Consensus       161 ~---------------~~~~~~~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~  222 (539)
T 1mdb_A          161 E---------------EFLPLEDLHTE---PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDH  222 (539)
T ss_dssp             T---------------TSEEGGGCCCC---CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCT
T ss_pred             c---------------chhhhhhcccc---ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCC
Confidence            0               01111111111   11223456799999999999999999999999999999988888889999


Q ss_pred             CcEEEEecChHHHHHHHH--HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHH
Q psy6874         325 NDVFLGYLPLAHVFELLS--ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKV  402 (504)
Q Consensus       325 ~d~~l~~lPl~h~~~~~~--~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~  402 (504)
                      +|++++++|++|.+++..  ++.+++.|+++++.+.......        ++.++++++|++.++|+++..+.+..... 
T Consensus       223 ~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-  293 (539)
T 1mdb_A          223 STVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDA--------FPLIEREKVTITALVPPLAMVWMDAASSR-  293 (539)
T ss_dssp             TCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHH--------HHHHHHHTCSEEEECHHHHHHHHHHHHHC-
T ss_pred             CCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHH--------HHHHHHcCCeEEEccHHHHHHHHhCcccc-
Confidence            999999999999999874  7889999999999865432222        33588999999999999999987643211 


Q ss_pred             hccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccc
Q psy6874         403 SRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLT  482 (504)
Q Consensus       403 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~T  482 (504)
                                                              ....++||.+++||+++++++.++++..+|++++++||+|
T Consensus       294 ----------------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~T  333 (539)
T 1mdb_A          294 ----------------------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMA  333 (539)
T ss_dssp             ----------------------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECT
T ss_pred             ----------------------------------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCC
Confidence                                                    0112689999999999999999999998999999999999


Q ss_pred             cccc
Q psy6874         483 ETTS  486 (504)
Q Consensus       483 Et~~  486 (504)
                      |++.
T Consensus       334 E~~~  337 (539)
T 1mdb_A          334 EGLV  337 (539)
T ss_dssp             TSCE
T ss_pred             CCcc
Confidence            9653

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=1.9e-44  Score=389.63  Aligned_cols=347  Identities=17%  Similarity=0.156  Sum_probs=267.9

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHH-hCCCCCCCeEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLR-SLGQEPRHNVV  168 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~Gv~~gd~Va  168 (504)
                      ..++.++|+++++++||++|+.+..                 ...++.+++||+||.++++++|+.|+ ++|+++||+|+
T Consensus        81 ~n~~~~~l~~~a~~~pd~~Al~~~~-----------------~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~  143 (663)
T 1ry2_A           81 LNACYNCVDRHALKTPNKKAIIFEG-----------------DEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVA  143 (663)
T ss_dssp             ECHHHHHTHHHHTTCTTSEEEEEEC-----------------SSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred             ccHHHHHHHHHhccCCCceEEEEEc-----------------CCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            4578899999999999999997531                 01134578999999999999999999 99999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch---------hHHHHHhhcCCCceEEE
Q psy6874         169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL---------PKFRNILKLTPRVSTLI  239 (504)
Q Consensus       169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~l~~ii  239 (504)
                      |+++|++|++++++||+++|++++|+++.++.+++.++|+++++++||++++..         +.+.++....+.+++++
T Consensus       144 i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi  223 (663)
T 1ry2_A          144 VYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVL  223 (663)
T ss_dssp             ECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEE
T ss_pred             EEcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEE
Confidence            999999999999999999999999999999999999999999999999987643         34555556667777888


Q ss_pred             EEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHH-hhhh
Q psy6874         240 YMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLK-AFSD  318 (504)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~-~~~~  318 (504)
                      +++..... .. .. .......|+++......   ..+..+..++|+++|+|||||||.||||+++|.+++.... ....
T Consensus       224 ~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~  297 (663)
T 1ry2_A          224 VYRKTNNP-SV-AF-HAPRDLDWATEKKKYKT---YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRY  297 (663)
T ss_dssp             EECSSCCS-SC-CC-CSSSEEEHHHHHTTSCS---CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHH
T ss_pred             EEecCCCC-cc-cc-CCCccccHHHHHhhcCC---CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHH
Confidence            77543100 00 00 01134567777654321   2233445679999999999999999999999999876654 3445


Q ss_pred             ccCCCCCcEEEEecChHHHHHHH-HHHHHHHhCCeEEEcCcccc-ccchhhhccCCcccccccCCcEEEeccHHHHHHHH
Q psy6874         319 AVHIEPNDVFLGYLPLAHVFELL-SESVCLLCGVAIGYSTPLTM-IDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYK  396 (504)
Q Consensus       319 ~~~~~~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~~-~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~  396 (504)
                      .+++.++|+++++.|++|+.+.. .++.+|+.|+++++.+.... .+....     ++.++++++|+++++|++++.+.+
T Consensus       298 ~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~-----~~~i~~~~vt~~~~~Ps~~~~l~~  372 (663)
T 1ry2_A          298 TFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRY-----WDIIDEHKVTQFYVAPTALRLLKR  372 (663)
T ss_dssp             HSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHH-----HHHHHHTTCSEEEECHHHHHHHTT
T ss_pred             hcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHH-----HHHHHHcCCCEEEecHHHHHHHHh
Confidence            67889999999999999999985 57799999999999864322 222222     345899999999999999988854


Q ss_pred             HHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhC---C
Q psy6874         397 GVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLC---E  473 (504)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~---~  473 (504)
                      ...+.                               .        +....++||.+++||+|+++++++++++.+|   +
T Consensus       373 ~~~~~-------------------------------~--------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~  413 (663)
T 1ry2_A          373 AGDSY-------------------------------I--------ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEI  413 (663)
T ss_dssp             SCTTS-------------------------------S--------SSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSS
T ss_pred             cCccc-------------------------------c--------ccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCc
Confidence            21000                               0        0112378999999999999999999999888   8


Q ss_pred             ceeeeccccccccceeeccc--CCCCCccCCC
Q psy6874         474 KVIQGYGLTETTSCATVMHL--NDMGNINSNG  503 (504)
Q Consensus       474 ~v~~~YG~TEt~~~~~~~~~--~d~~~~~s~G  503 (504)
                      ++++.||+||+++.++...+  ......+++|
T Consensus       414 ~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G  445 (663)
T 1ry2_A          414 PIVDTYWQTESGSHLVTPLAGGVTPMKPGSAS  445 (663)
T ss_dssp             CEEECBCCTTTCSCSEECCTTTCCCCCTTCCC
T ss_pred             eEEEeECCccccCeeeccCCCCCcccCCCccc
Confidence            99999999999876665543  1223455665

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=2.5e-44  Score=388.34  Aligned_cols=346  Identities=18%  Similarity=0.182  Sum_probs=266.1

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..++.++|+++++++||++|+.+..                 ...++.+.+||+||.++++++|++|+++|+++||+|+|
T Consensus        75 ~n~~~~~l~~~a~~~pd~~Al~~~~-----------------~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i  137 (652)
T 1pg4_A           75 LNLAANCLDRHLQENGDRTAIIWEG-----------------DDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAI  137 (652)
T ss_dssp             ECHHHHHTGGGHHHHTTSEEEEEEC-----------------SSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred             hhHHHHHHHHHhccCCCceEEEEEc-----------------CCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            3567889999999999999997531                 01134578999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch---------hHHHHHhhcCC--CceEE
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL---------PKFRNILKLTP--RVSTL  238 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~--~l~~i  238 (504)
                      +++|++|++++++||+++|++++|+++.++++++.++++++++++||++++..         +.+.++....+  .++.+
T Consensus       138 ~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  217 (652)
T 1pg4_A          138 YMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHV  217 (652)
T ss_dssp             ECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEE
T ss_pred             EeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEE
Confidence            99999999999999999999999999999999999999999999999987642         33444444432  46677


Q ss_pred             EEEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHH-hhh
Q psy6874         239 IYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLK-AFS  317 (504)
Q Consensus       239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~-~~~  317 (504)
                      +.++.......+.    ......|++++.....   ..+.....++|+++|+|||||||.||||+++|++++.... ...
T Consensus       218 i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~  290 (652)
T 1pg4_A          218 IVLKRTGSDIDWQ----EGRDLWWRDLIEKASP---EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK  290 (652)
T ss_dssp             EEECSSCCCCCCC----BTTEEEHHHHHTTSCS---CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHH
T ss_pred             EEEeCCCCccccc----CCCceeHHHHHhhcCC---CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHH
Confidence            7765421111110    1124567887654322   2233345679999999999999999999999999887664 444


Q ss_pred             hccCCCCCcEEEEecChHHHHHHH-HHHHHHHhCCeEEEcCcccc-ccchhhhccCCcccccccCCcEEEeccHHHHHHH
Q psy6874         318 DAVHIEPNDVFLGYLPLAHVFELL-SESVCLLCGVAIGYSTPLTM-IDTSSKIKRGTKGDASVLHPTALTAVPLILDRIY  395 (504)
Q Consensus       318 ~~~~~~~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~~-~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~  395 (504)
                      ..+++.++|++++++|++|+.++. .++.+|+.|+++++.+.... .+....     ++.++++++|++.++|+++..+.
T Consensus       291 ~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~-----~~~i~~~~vt~~~~~P~~~~~l~  365 (652)
T 1pg4_A          291 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARM-----CQVVDKHQVNILYTAPTAIRALM  365 (652)
T ss_dssp             HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHH-----HHHHHHHTCSEEEECHHHHHHHH
T ss_pred             HhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHH-----HHHHHHhCCeEEEeCHHHHHHHH
Confidence            567889999999999999999985 57799999999999865321 222222     34588999999999999999886


Q ss_pred             HHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhC---
Q psy6874         396 KGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLC---  472 (504)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~---  472 (504)
                      +...+.                                       ......++||.+++||+++++++.+++++.+|   
T Consensus       366 ~~~~~~---------------------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~  406 (652)
T 1pg4_A          366 AEGDKA---------------------------------------IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEK  406 (652)
T ss_dssp             TTGGGG---------------------------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTC
T ss_pred             hcCccc---------------------------------------cccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCC
Confidence            531110                                       01112378999999999999999999998888   


Q ss_pred             CceeeeccccccccceeecccC-CCCCccCCC
Q psy6874         473 EKVIQGYGLTETTSCATVMHLN-DMGNINSNG  503 (504)
Q Consensus       473 ~~v~~~YG~TEt~~~~~~~~~~-d~~~~~s~G  503 (504)
                      ++++++||+||+++.++...+. .....+++|
T Consensus       407 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G  438 (652)
T 1pg4_A          407 CPVVDTWWQTETGGFMITPLPGAIELKAGSAT  438 (652)
T ss_dssp             SCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCB
T ss_pred             CcEEccccCcccccceecCCCCCcCccCCccc
Confidence            9999999999998766655432 223445665

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=3.8e-44  Score=378.90  Aligned_cols=318  Identities=20%  Similarity=0.320  Sum_probs=258.1

Q ss_pred             CCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeE
Q psy6874          88 DGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNV  167 (504)
Q Consensus        88 ~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V  167 (504)
                      |...|+.++|++.++++||++|+.+.                     .+.+++||+||.++++++|++|++.|+++||+|
T Consensus        19 p~~~~l~~~l~~~a~~~p~~~a~~~~---------------------~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V   77 (536)
T 3ni2_A           19 PKNLPLHSYVLENLSNHSSKPCLING---------------------ANGDVYTYADVELTARRVASGLNKIGIQQGDVI   77 (536)
T ss_dssp             CSSCCHHHHHTTTGGGSTTSEEEEET---------------------TTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred             CCCCcHHHHHHHHhhcCCCceEEEEC---------------------CCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            34568999999999999999999642                     122679999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCc
Q psy6874         168 VIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTS  247 (504)
Q Consensus       168 ai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~  247 (504)
                      +++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.+..... .+ .++.++..   
T Consensus        78 ~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~-~~~~~~~~---  152 (536)
T 3ni2_A           78 MLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DV-KVMCVDSA---  152 (536)
T ss_dssp             EEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TC-EEEESSCC---
T ss_pred             EEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-Cc-eEEEecCC---
Confidence            99999999999999999999999999999999999999999999999999998777766654332 22 34444332   


Q ss_pred             ccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhh----ccCCC
Q psy6874         248 TDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD----AVHIE  323 (504)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~  323 (504)
                              ......++++......   ..+.....++|+++|+|||||||.||||+++|+++++.+.....    .+.+.
T Consensus       153 --------~~~~~~~~~~~~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~  221 (536)
T 3ni2_A          153 --------PDGCLHFSELTQADEN---EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFH  221 (536)
T ss_dssp             --------CTTCEETHHHHTSCGG---GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCC
T ss_pred             --------CCCccCHHHHhhcccc---ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCC
Confidence                    0123456666544332   22334567899999999999999999999999999988766543    34688


Q ss_pred             CCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHH
Q psy6874         324 PNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKV  402 (504)
Q Consensus       324 ~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~  402 (504)
                      ++|++++.+|++|++++.. .+.++..|+++++.+.......        ++.++++++|++.++|+++..+.+...   
T Consensus       222 ~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~---  290 (536)
T 3ni2_A          222 SEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSL--------LGLIEKYKVSIAPVVPPVMMSIAKSPD---  290 (536)
T ss_dssp             TTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHH--------HHHHHHHTCCEEEECHHHHHHHHTCSC---
T ss_pred             CCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHH--------HHHHHHhCCeEEEccHHHHHHHHhCcc---
Confidence            9999999999999999975 6789999999999876443332        335889999999999999988865210   


Q ss_pred             hccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeeccc
Q psy6874         403 SRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGL  481 (504)
Q Consensus       403 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~  481 (504)
                                                    .+        ....++||.+++||+++++++.++++..+ +++++++||+
T Consensus       291 ------------------------------~~--------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~  332 (536)
T 3ni2_A          291 ------------------------------LD--------KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGM  332 (536)
T ss_dssp             ------------------------------GG--------GSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEEC
T ss_pred             ------------------------------cc--------cCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccc
Confidence                                          01        11226899999999999999999999888 8999999999


Q ss_pred             cccccceeec
Q psy6874         482 TETTSCATVM  491 (504)
Q Consensus       482 TEt~~~~~~~  491 (504)
                      ||+++.++.+
T Consensus       333 TE~~~~~~~~  342 (536)
T 3ni2_A          333 TEAGPVLAMC  342 (536)
T ss_dssp             GGGSSEEEEC
T ss_pred             cccchhhhcc
Confidence            9998766554

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=1.4e-43  Score=376.82  Aligned_cols=332  Identities=13%  Similarity=0.147  Sum_probs=263.6

Q ss_pred             CCcHHHHHHHHHHh-----CCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhC-CCCC
Q psy6874          90 VDTMEKVLRYVVTR-----FSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSL-GQEP  163 (504)
Q Consensus        90 ~~tl~~~~~~~~~~-----~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gv~~  163 (504)
                      ..++.++|++.++.     +||++|+.+.+                  ..++.+++||+||.++++++|++|++. |+++
T Consensus        37 ~~~~~~~l~~~a~~~~a~~~p~~~al~~~~------------------~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~   98 (570)
T 3c5e_A           37 FNFASDVLDHWADMEKAGKRPPSPALWWVN------------------GKGKELMWNFRELSENSQQAANVLSGACGLQR   98 (570)
T ss_dssp             CCHHHHTHHHHHHHHHTTSSCCCEEEEEEC------------------SSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred             ccHHHHHHHHHHhhccccCCCCceEEEEEc------------------CCCceeEEeHHHHHHHHHHHHHHHHHccCCCC
Confidence            34568999999998     99999997532                  012347899999999999999999998 9999


Q ss_pred             CCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcC
Q psy6874         164 RHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMED  243 (504)
Q Consensus       164 gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~  243 (504)
                      ||+|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+..+....+.++.++.++.
T Consensus        99 gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (570)
T 3c5e_A           99 GDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSE  178 (570)
T ss_dssp             TCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESS
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999888877777777787777777654


Q ss_pred             CCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHH--HHHhhhhccC
Q psy6874         244 QLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIS--TLKAFSDAVH  321 (504)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~--~~~~~~~~~~  321 (504)
                      ..        .  .....++++......   ..+.....++|+++|+|||||||.||||+++|. ++.  ..... ..++
T Consensus       179 ~~--------~--~~~~~~~~~~~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~  243 (570)
T 3c5e_A          179 KS--------C--DGWLNFKKLLNEAST---THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTG  243 (570)
T ss_dssp             SC--------C--TTSEEHHHHHHHSCS---CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTS
T ss_pred             cC--------c--cccccHHHHhhcccc---cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcC
Confidence            20        0  113456776654332   122234567999999999999999999999999 544  44444 6678


Q ss_pred             CCCCcEEEEecChHHHHHHH-HHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHH
Q psy6874         322 IEPNDVFLGYLPLAHVFELL-SESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHE  400 (504)
Q Consensus       322 ~~~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~  400 (504)
                      +.++|++++++|++|++++. ..+.++..|+++++.+.. ..+....     ++.++++++|++.++|+++..+.+.   
T Consensus       244 ~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~-----~~~i~~~~~t~~~~~P~~~~~l~~~---  314 (570)
T 3c5e_A          244 LQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLP-KFDPLVI-----LKTLSSYPIKSMMGAPIVYRMLLQQ---  314 (570)
T ss_dssp             CCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCS-SCCHHHH-----HHHHHHSCCCEEEECHHHHHHHHTS---
T ss_pred             CCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCC-CCCHHHH-----HHHHHHhCCeEEeccHHHHHHHHhc---
Confidence            89999999999999999987 477899999999987642 1222211     3358899999999999999988652   


Q ss_pred             HHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecc
Q psy6874         401 KVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYG  480 (504)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG  480 (504)
                      ..                                       .....++||.+++||+++++++.++++..+|++++++||
T Consensus       315 ~~---------------------------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG  355 (570)
T 3c5e_A          315 DL---------------------------------------SSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYG  355 (570)
T ss_dssp             CT---------------------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEE
T ss_pred             cc---------------------------------------cccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccc
Confidence            00                                       001126899999999999999999999988999999999


Q ss_pred             ccccccceeecccCCCCCccCCC
Q psy6874         481 LTETTSCATVMHLNDMGNINSNG  503 (504)
Q Consensus       481 ~TEt~~~~~~~~~~d~~~~~s~G  503 (504)
                      +||+++.++..... ....+++|
T Consensus       356 ~TE~~~~~~~~~~~-~~~~~~vG  377 (570)
T 3c5e_A          356 QTETGLTCMVSKTM-KIKPGYMG  377 (570)
T ss_dssp             ETTTEEEEECCTTS-CCCTTCCC
T ss_pred             hhhcccceecCccc-ccCCCccc
Confidence            99998655544322 23445555

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=2.3e-43  Score=373.67  Aligned_cols=332  Identities=22%  Similarity=0.308  Sum_probs=259.9

Q ss_pred             CCCCcHHH-HHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy6874          88 DGVDTMEK-VLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHN  166 (504)
Q Consensus        88 ~~~~tl~~-~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~  166 (504)
                      +...|+.+ ++.+.++++ |++|+.+.                     .+.+++||+||.++++++|+.|++.|+++||+
T Consensus        22 p~~~~l~~~~l~~~~~~~-~~~A~~~~---------------------~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~   79 (548)
T 2d1s_A           22 EGSAGTQLRKYMERYAKL-GAIAFTNA---------------------VTGVDYSYAEYLEKSCCLGKALQNYGLVVDGR   79 (548)
T ss_dssp             SSCHHHHHHHHHHHHHHH-TCEEEEET---------------------TTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCE
T ss_pred             CCcCcHHHHHHHhhhccc-CCceEEEc---------------------CCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence            34458899 888888899 99999631                     12257999999999999999999999999999


Q ss_pred             EEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCC
Q psy6874         167 VVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLT  246 (504)
Q Consensus       167 Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~  246 (504)
                      |+|+++|++||+++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+..+....+....++.++... 
T Consensus        80 V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  158 (548)
T 2d1s_A           80 IALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKV-  158 (548)
T ss_dssp             EEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSS-
T ss_pred             EEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcc-
Confidence            9999999999999999999999999999999999999999999999999999988777766665566556666654320 


Q ss_pred             cccccccCCCceeeehhHHHhcccccCCCCCCCCC------CCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhc-
Q psy6874         247 STDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPP------TPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA-  319 (504)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~-  319 (504)
                       .     .  ..+..++++.......  ..+....      .++|+++|+|||||||.||||+++|+++.+.+...... 
T Consensus       159 -~-----~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~  228 (548)
T 2d1s_A          159 -D-----Y--RGYQCLDTFIKRNTPP--GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI  228 (548)
T ss_dssp             -C-----B--TTBCBHHHHHHHTSCT--TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTT
T ss_pred             -c-----c--cccccHHHHHhcCccc--cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchh
Confidence             0     0  0134566665543211  0111111      23899999999999999999999999999988877666 


Q ss_pred             --cCCCCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHH
Q psy6874         320 --VHIEPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYK  396 (504)
Q Consensus       320 --~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~  396 (504)
                        +++.++|++++++|++|++++.. .+.++ .|+++++.+.......        ++.++++++|++.++|+++..+.+
T Consensus       229 ~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~  299 (548)
T 2d1s_A          229 YGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETF--------LKTLQDYKCTSVILVPTLFAILNK  299 (548)
T ss_dssp             TSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHH--------HHHHHHTTEEEEEECHHHHHHHHH
T ss_pred             hccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHH--------HHHHHHcCCcEEEecHHHHHHHHh
Confidence              67889999999999999999886 55666 9999999864322221        335889999999999999998865


Q ss_pred             HHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCce
Q psy6874         397 GVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKV  475 (504)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v  475 (504)
                      ..                                 ..+        ....++||.+++||+++++++.++++..+ ++++
T Consensus       300 ~~---------------------------------~~~--------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i  338 (548)
T 2d1s_A          300 SE---------------------------------LLN--------KYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGV  338 (548)
T ss_dssp             CS---------------------------------CGG--------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCC
T ss_pred             Cc---------------------------------ccc--------cccccceeEEEEcCccCCHHHHHHHHHHcCCCce
Confidence            21                                 000        11126899999999999999999999988 6889


Q ss_pred             eeeccccccccceeecccCCCCCccCCC
Q psy6874         476 IQGYGLTETTSCATVMHLNDMGNINSNG  503 (504)
Q Consensus       476 ~~~YG~TEt~~~~~~~~~~d~~~~~s~G  503 (504)
                      +++||+||+++.++.... +....+++|
T Consensus       339 ~~~YG~TE~~~~~~~~~~-~~~~~~~~G  365 (548)
T 2d1s_A          339 RQGYGLTETTSAIIITPE-GDDKPGASG  365 (548)
T ss_dssp             EEEEECGGGSSEEEECCT-TCCCTTCCB
T ss_pred             eeccccccccceeeecCc-ccCCCCCCC
Confidence            999999999876665432 223444555

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=4.6e-43  Score=368.37  Aligned_cols=313  Identities=19%  Similarity=0.209  Sum_probs=252.9

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..|+.++|+++++++||++|+.+.                       .+++||+||.++++++|++|++.|+++||+|++
T Consensus         5 ~~tl~~~l~~~a~~~pd~~Al~~~-----------------------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i   61 (509)
T 3ivr_A            5 DFTLADVYRRNAALFPDRTAFMVD-----------------------GVRLTHRDYLARAERLASGLLRDGVHTGDRVAI   61 (509)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEET-----------------------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             cCCHHHHHHHHHHHCCCceEEEEC-----------------------CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            468999999999999999999632                       268999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD  249 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~  249 (504)
                      +++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.......+.++.++.+++..    
T Consensus        62 ~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  137 (509)
T 3ivr_A           62 LSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGS----  137 (509)
T ss_dssp             ECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCC----
T ss_pred             EcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCC----
Confidence            9999999999999999999999999999999999999999999999999988776566666677777777765431    


Q ss_pred             ccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEE
Q psy6874         250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFL  329 (504)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l  329 (504)
                                ..+.++.......  ..+.....++|+++|+|||||||.||||+++|+++.+.+......+++.++|+++
T Consensus       138 ----------~~~~~~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l  205 (509)
T 3ivr_A          138 ----------GPFAPFKDLASDT--PFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNL  205 (509)
T ss_dssp             ----------SSCEEGGGTCCCS--CCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEE
T ss_pred             ----------cChhhHhhccCCC--CCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEE
Confidence                      0111111111111  2233456789999999999999999999999999999999988889999999999


Q ss_pred             EecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHH
Q psy6874         330 GYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFK  409 (504)
Q Consensus       330 ~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~  409 (504)
                      +++|++|++++...+.+++.|++.++.........        ++.++++++|++.++|+++..+.+..    .      
T Consensus       206 ~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~i~~~~~t~~~~~p~~~~~l~~~~----~------  267 (509)
T 3ivr_A          206 GMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQA--------ARDIEAHKVTVMAEFAPMLGNILDQA----A------  267 (509)
T ss_dssp             ECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHH--------HHHHHHHTCCEEEEETTHHHHHHHHC----C------
T ss_pred             EeCCCcchhHHHHHHHHHHhCCcEEEecccCHHHH--------HHHHHHHCCcEEEecHHHHHHHHhcc----c------
Confidence            99999999999877766666666666543222211        33588999999999999999997642    0      


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeeccccccccce
Q psy6874         410 RALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTSCA  488 (504)
Q Consensus       410 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~~~  488 (504)
                                                       ....+++|.++.||++   ++.+.++..+ +++++++||+||+++.+
T Consensus       268 ---------------------------------~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~  311 (509)
T 3ivr_A          268 ---------------------------------PAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLS  311 (509)
T ss_dssp             ---------------------------------GGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEE
T ss_pred             ---------------------------------ccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCcccccccc
Confidence                                             0012689999999988   7788888777 99999999999998877


Q ss_pred             eecccCC
Q psy6874         489 TVMHLND  495 (504)
Q Consensus       489 ~~~~~~d  495 (504)
                      +.....+
T Consensus       312 ~~~~~~~  318 (509)
T 3ivr_A          312 TFAPYRD  318 (509)
T ss_dssp             EEEEGGG
T ss_pred             ccCcccc
Confidence            7665443

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=7.9e-44  Score=371.49  Aligned_cols=324  Identities=18%  Similarity=0.202  Sum_probs=243.3

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..|+.++|+++++++||++|+.+.+.     ...         ..+..+++||+||.++++++|++|++.|+ +||+|+|
T Consensus        23 ~~tl~~~l~~~a~~~pd~~Al~~~~~-----~~~---------~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i   87 (480)
T 3t5a_A           23 VRSLPAALRACARLQPHDPAFTFMDY-----EQD---------WDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVI   87 (480)
T ss_dssp             -CCHHHHHHHHHHHSTTSEEEEEEET-----TTC---------TTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEE
T ss_pred             cccHHHHHHHHHHhCCCCceEEEecc-----cCC---------CCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEE
Confidence            45899999999999999999975420     000         11334789999999999999999999996 9999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecC---CCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCce--EEEEEcCC
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYA---TLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVS--TLIYMEDQ  244 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~---~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~--~ii~~~~~  244 (504)
                      +++|+++|+++++||+++|++++|+++   .++.+++.+++++++++++|++.+..+.+.+.....+...  .++.++..
T Consensus        88 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (480)
T 3t5a_A           88 SAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLL  167 (480)
T ss_dssp             ECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGS
T ss_pred             EcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEeccc
Confidence            999999999999999999999999999   7889999999999999999999988776665443332211  22222211


Q ss_pred             CCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCC
Q psy6874         245 LTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEP  324 (504)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~  324 (504)
                                           .....   .........++++++|+|||||||.||||++||+|+.+++......+.+.+
T Consensus       168 ---------------------~~~~~---~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~  223 (480)
T 3t5a_A          168 ---------------------DLDAP---NGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADT  223 (480)
T ss_dssp             ---------------------CTTCC------CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTT
T ss_pred             ---------------------ccccc---cCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhcccc
Confidence                                 00000   022233456789999999999999999999999999999888877777776


Q ss_pred             ------CcEEEEecChHHHHHHH-HHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHH
Q psy6874         325 ------NDVFLGYLPLAHVFELL-SESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKG  397 (504)
Q Consensus       325 ------~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~  397 (504)
                            +|++++++|++|++++. .++.+++.|+++++.++..+......+    +..++++++| +.++|.++..+...
T Consensus       224 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~----~~~i~~~~~t-~~~~p~~~~~l~~~  298 (480)
T 3t5a_A          224 DGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARW----MHLMASDFHA-FSAAPNFAFELAAR  298 (480)
T ss_dssp             TTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHH----HHHTTSSSEE-EEEECHHHHHHHHH
T ss_pred             ccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHH----HHHHHhhcee-EeeChHHHHHHHHh
Confidence                  99999999999999977 478899999999998765332111111    3358899999 88999998888653


Q ss_pred             HHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhC-----
Q psy6874         398 VHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLC-----  472 (504)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~-----  472 (504)
                      ....                             +        .......++||.+++||+++++++.+.+++.++     
T Consensus       299 ~~~~-----------------------------~--------~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~  341 (480)
T 3t5a_A          299 RTTD-----------------------------D--------DMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQ  341 (480)
T ss_dssp             HCCT-----------------------------G--------GGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCC
T ss_pred             hcCc-----------------------------c--------cccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCC
Confidence            1100                             0        001112379999999999999999999998874     


Q ss_pred             -CceeeeccccccccceeecccC
Q psy6874         473 -EKVIQGYGLTETTSCATVMHLN  494 (504)
Q Consensus       473 -~~v~~~YG~TEt~~~~~~~~~~  494 (504)
                       ++++++||+||+++.++.....
T Consensus       342 ~~~~~~~YG~TE~~~~~~~~~~~  364 (480)
T 3t5a_A          342 ERVIRPSYWLAEATVYVATSKPG  364 (480)
T ss_dssp             GGGEEEEEEETTTTEEEEECCTT
T ss_pred             hhhccccccccccceeEeecccC
Confidence             4799999999998877776543

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=5.1e-43  Score=369.81  Aligned_cols=329  Identities=17%  Similarity=0.206  Sum_probs=249.8

Q ss_pred             CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Q psy6874          91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIF  170 (504)
Q Consensus        91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~  170 (504)
                      .++.++|+++++ +||++|+.+.                      + +.+||+||.++++++|++|+++|+++||+|+++
T Consensus        24 ~~~~~~l~~~~~-~p~~~A~~~~----------------------~-~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~   79 (529)
T 2v7b_A           24 NFAAYLFRLNET-RAGKTAYIDD----------------------T-GSTTYGELEERARRFASALRTLGVHPEERILLV   79 (529)
T ss_dssp             CHHHHHHHHTGG-GTTSEEEECS----------------------S-CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             eHHHHHHHhhhc-cCCceEEEeC----------------------C-CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            458899999999 9999999631                      1 579999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCc-eEEEEEcCCCCccc
Q psy6874         171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRV-STLIYMEDQLTSTD  249 (504)
Q Consensus       171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l-~~ii~~~~~~~~~~  249 (504)
                      ++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.......+.+ +.++..+...  . 
T Consensus        80 ~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-  156 (529)
T 2v7b_A           80 MLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRE--S-  156 (529)
T ss_dssp             CCSSTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------
T ss_pred             cCCcHHHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccc--c-
Confidence            99999999999999999999999999999999999999999999999988777666655544444 4555544320  0 


Q ss_pred             ccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHH-HHHHHhhhhccCCCCCcEE
Q psy6874         250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNM-ISTLKAFSDAVHIEPNDVF  328 (504)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~d~~  328 (504)
                           .+.....++++......   ........++|+++|+|||||||.||||+++|+++ .+........+++.++|++
T Consensus       157 -----~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~  228 (529)
T 2v7b_A          157 -----EPRLAPLFEELIDAAAP---AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVV  228 (529)
T ss_dssp             --------CCCBHHHHHHTSCC---CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEE
T ss_pred             -----ccccccchhhhhccCCC---cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEE
Confidence                 01112346666543221   22233456799999999999999999999999999 6666666666788999999


Q ss_pred             EEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccCh
Q psy6874         329 LGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASP  407 (504)
Q Consensus       329 l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~  407 (504)
                      ++++|++|.+++.. .+.++..|+++++.+..  .+....     ++.+++++||++.++|+++..+.+...     .+ 
T Consensus       229 ~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~--~~~~~~-----~~~i~~~~~t~~~~~P~~~~~l~~~~~-----~~-  295 (529)
T 2v7b_A          229 FSAAKLFFAYGLGNGLTFPLSVGATAILMAER--PTADAI-----FARLVEHRPTVFYGVPTLYANMLVSPN-----LP-  295 (529)
T ss_dssp             EESSCTTSHHHHHHHTHHHHHHTCEEECCCSC--CCHHHH-----HHHHHHSCCSEEEECHHHHHHHHTCTT-----CC-
T ss_pred             EEeecHHHHHHHHHHHHHHHhcCcEEEEecCC--CCHHHH-----HHHHHHhCCEEEEecHHHHHHHHhCcc-----cc-
Confidence            99999999999875 56899999999987421  111111     335889999999999999988865210     00 


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccc
Q psy6874         408 FKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSC  487 (504)
Q Consensus       408 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~  487 (504)
                                             .            ....++|.+++||+++++++.++++..+|++++++||+||+++.
T Consensus       296 -----------------------~------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~  340 (529)
T 2v7b_A          296 -----------------------A------------RADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHI  340 (529)
T ss_dssp             -----------------------C------------GGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSE
T ss_pred             -----------------------c------------ccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCce
Confidence                                   0            00037999999999999999999999899999999999999766


Q ss_pred             eeecccCCCCCccCCC
Q psy6874         488 ATVMHLNDMGNINSNG  503 (504)
Q Consensus       488 ~~~~~~~d~~~~~s~G  503 (504)
                      ++.....+ ...+++|
T Consensus       341 ~~~~~~~~-~~~~~~G  355 (529)
T 2v7b_A          341 FLSNRAGA-VEYGTTG  355 (529)
T ss_dssp             EEECCTTC-CCTTSCC
T ss_pred             eeccccCC-CccCCcc
Confidence            55554333 3344554

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=5.4e-43  Score=367.36  Aligned_cols=303  Identities=22%  Similarity=0.271  Sum_probs=237.8

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      +.|+.++|+++++++||++|+.+.                     ...+++||+||.++++++|++|+++|+++||+|++
T Consensus         1 M~tl~~~l~~~a~~~p~~~a~~~~---------------------~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i   59 (504)
T 1t5h_X            1 MQTVNEMLRRAATRAPDHCALAVP---------------------ARGLRLTHAELRARVEAVAARLHADGLRPQQRVAV   59 (504)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEEET---------------------TTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             CCcHHHHHHHHHHhCCCceEEEEc---------------------CCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            357999999999999999999632                     11267999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEE--cCCchhHHHHHhhcCCCceEEEEEcCCCCc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVIT--THDLLPKFRNILKLTPRVSTLIYMEDQLTS  247 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~  247 (504)
                      +++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|+  +.+..+.+.   ...+.++ ++        
T Consensus        60 ~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~~~~-~~--------  127 (504)
T 1t5h_X           60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIF---QSGSGAR-II--------  127 (504)
T ss_dssp             ECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHH---HHCCCCE-EE--------
T ss_pred             EcCCCHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhh---hccccce-eE--------
Confidence            999999999999999999999999999999999999999999999999  766544331   1122222 22        


Q ss_pred             ccccccCCCceeeehhHHHhccccc--CCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCC--C
Q psy6874         248 TDTTNFKQGIEIVPFKQIVKRGSES--GSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHI--E  323 (504)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~--~  323 (504)
                                   .++++.......  ....+.....++|+++|+|||||||.||||+++|+++.+.+......+++  .
T Consensus       128 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~  194 (504)
T 1t5h_X          128 -------------FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHG  194 (504)
T ss_dssp             -------------EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSS
T ss_pred             -------------EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCC
Confidence                         122221111000  00111134567999999999999999999999999999998888777777  8


Q ss_pred             CCcEEEEecChHHHHHHH-HHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHH
Q psy6874         324 PNDVFLGYLPLAHVFELL-SESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKV  402 (504)
Q Consensus       324 ~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~  402 (504)
                      ++|++++.+|++|++++. ..+.++..|+++++.+.......        ++.++++++|++.++|+++..+.+...+..
T Consensus       195 ~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  266 (504)
T 1t5h_X          195 RHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDA--------LQLVQQEQVTSLFATPTHLDALAAAAAHAG  266 (504)
T ss_dssp             TTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHH--------HHHHHHHTCCEEECCHHHHHHHHHHHCCTT
T ss_pred             CCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHH--------HHHHHHhCCeEEEeChHHHHHHHhhhcccc
Confidence            899999999999999985 57889999999999865332222        335889999999999999999876421000


Q ss_pred             hccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccc
Q psy6874         403 SRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLT  482 (504)
Q Consensus       403 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~T  482 (504)
                      .                                       ....++||.+++||+++++++.++++..++++++++||+|
T Consensus       267 ~---------------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~T  307 (504)
T 1t5h_X          267 S---------------------------------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTT  307 (504)
T ss_dssp             C---------------------------------------CCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEET
T ss_pred             c---------------------------------------cccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccc
Confidence            0                                       0112689999999999999999999999999999999999


Q ss_pred             ccc
Q psy6874         483 ETT  485 (504)
Q Consensus       483 Et~  485 (504)
                      |++
T Consensus       308 E~~  310 (504)
T 1t5h_X          308 EAM  310 (504)
T ss_dssp             TTE
T ss_pred             ccc
Confidence            983

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=3.3e-43  Score=369.72  Aligned_cols=304  Identities=15%  Similarity=0.215  Sum_probs=241.6

Q ss_pred             cHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEc
Q psy6874          92 TMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFA  171 (504)
Q Consensus        92 tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~  171 (504)
                      |+.++|++.++++||++|+.+.+                       +++||+||.++++++|++|.+.|+++||+|++++
T Consensus         2 ~l~~~l~~~a~~~p~~~A~~~~~-----------------------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~   58 (512)
T 3fce_A            2 KLLEQIEKWAAETPDQTAFVWRD-----------------------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYG   58 (512)
T ss_dssp             CHHHHHHHHHHHSTTSEEEEETT-----------------------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEE
T ss_pred             cHHHHHHHHHHHCCCceEEEeCC-----------------------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEe
Confidence            68899999999999999996422                       6799999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccccc
Q psy6874         172 ETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT  251 (504)
Q Consensus       172 ~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~  251 (504)
                      +|++||+++++||+++|++++|+++.++.+++.++++++++++++++......         .+...+...         
T Consensus        59 ~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~---------~~~~~~~~~---------  120 (512)
T 3fce_A           59 HMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT---------DLPVRIVSE---------  120 (512)
T ss_dssp             SSCHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS---------CCSSEEEET---------
T ss_pred             CCCHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc---------ccccceech---------
Confidence            99999999999999999999999999999999999999999999998643210         000000000         


Q ss_pred             ccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEEe
Q psy6874         252 NFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGY  331 (504)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~  331 (504)
                              ..+.++....... ...+.....++|+++|+|||||||.||||+++|.++.+.+......+++.++|+++++
T Consensus       121 --------~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~  191 (512)
T 3fce_A          121 --------DNLKDIFFTHKGN-TPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQ  191 (512)
T ss_dssp             --------HHHHHHHHHTTTC-CCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEEC
T ss_pred             --------hhhhhhccccccc-CCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence                    0122222111111 0222334567999999999999999999999999999999988888899999999999


Q ss_pred             cChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHH
Q psy6874         332 LPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRA  411 (504)
Q Consensus       332 lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~  411 (504)
                      +|++|.+++...+.+++.|+++++.+.....+....     ++.++++++|++.++|+++..+.+...            
T Consensus       192 ~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----~~~i~~~~~t~~~~~P~~~~~l~~~~~------------  254 (512)
T 3fce_A          192 APFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDL-----FASLEQSDIQVWTSTPSFAEMCLMEAS------------  254 (512)
T ss_dssp             SCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHH-----HHHHHHHCCCEEEECHHHHHHHTTSTT------------
T ss_pred             CCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHH-----HHHHHHcCCcEEEecHHHHHHHHhhcc------------
Confidence            999999999888899999999999876433333222     335889999999999999988754210            


Q ss_pred             HHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeeccccccccceee
Q psy6874         412 LFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTSCATV  490 (504)
Q Consensus       412 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~~~~~  490 (504)
                                                   ......+++|.+++||+++++++.+.+++.+ +++++++||+||+++.++.
T Consensus       255 -----------------------------~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~  305 (512)
T 3fce_A          255 -----------------------------FSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTG  305 (512)
T ss_dssp             -----------------------------CSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEE
T ss_pred             -----------------------------ccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheee
Confidence                                         0011236899999999999999999999888 8999999999999877665


Q ss_pred             c
Q psy6874         491 M  491 (504)
Q Consensus       491 ~  491 (504)
                      .
T Consensus       306 ~  306 (512)
T 3fce_A          306 I  306 (512)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=9.9e-43  Score=374.02  Aligned_cols=313  Identities=17%  Similarity=0.197  Sum_probs=254.6

Q ss_pred             CCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEE
Q psy6874          89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVV  168 (504)
Q Consensus        89 ~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Va  168 (504)
                      ...|+.++|+++++  ||++|+.+.                       .+.+||+||.++++++|++|++.|+++||+|+
T Consensus        25 ~~~~l~~~~~~~a~--pd~~Av~~~-----------------------~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~   79 (617)
T 3rg2_A           25 QDLPLTDILTRHAA--SDSIAVIDG-----------------------ERQLSYRELNQAADNLACSLRRQGIKPGETAL   79 (617)
T ss_dssp             CCCCTTHHHHTTTT--CCSEEEEET-----------------------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEE
T ss_pred             CcCCHHHHHHHhhC--CCCeEEecC-----------------------CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            34678899999887  999999632                       26899999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch-----hHHHHHhhcCCCceEEEEEcC
Q psy6874         169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL-----PKFRNILKLTPRVSTLIYMED  243 (504)
Q Consensus       169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~l~~ii~~~~  243 (504)
                      ++++|+++++++++||+++|++++|+++.++.+++.++++++++++++++.+..     +.+.......+.++.+...+.
T Consensus        80 l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (617)
T 3rg2_A           80 VQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLND  159 (617)
T ss_dssp             EECCSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETC
T ss_pred             EECCCcHHHHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeeccc
Confidence            999999999999999999999999999999999999999999999999997653     333444445566666665543


Q ss_pred             CCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCC
Q psy6874         244 QLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIE  323 (504)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~  323 (504)
                      ..             ...+.+.......   .....+..++++++|+|||||||.||||+++|+++.+.+......+++.
T Consensus       160 ~~-------------~~~~~~~~~~~~~---~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~  223 (617)
T 3rg2_A          160 SG-------------EHNLQDAINHPAE---DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFT  223 (617)
T ss_dssp             CS-------------TTBHHHHHHSCCS---SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCC
T ss_pred             cc-------------ccchhhhhccccc---ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCC
Confidence            30             1123333332221   2233445679999999999999999999999999999999988888999


Q ss_pred             CCcEEEEecChHHHHHHHH--HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHH
Q psy6874         324 PNDVFLGYLPLAHVFELLS--ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEK  401 (504)
Q Consensus       324 ~~d~~l~~lPl~h~~~~~~--~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~  401 (504)
                      ++|++++++|++|.+++..  .+.+++.|+++++.+.......        +..++++++|++.++|+++..+.+.....
T Consensus       224 ~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  295 (617)
T 3rg2_A          224 QQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLC--------FPLIEKHQVNVTALVPPAVSLWLQALIEG  295 (617)
T ss_dssp             TTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCHHHH--------HHHHHHTTCCEEEECHHHHHHHHHHHHTT
T ss_pred             CcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHH--------HHHHHHhCCcEEEcchHHHHHHHHhhhcc
Confidence            9999999999999999874  7889999999999765433222        23478999999999999999987743221


Q ss_pred             HhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccc
Q psy6874         402 VSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGL  481 (504)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~  481 (504)
                      ...                                       ...++||.+++||+++++++.+.++..++++++|.||+
T Consensus       296 ~~~---------------------------------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~  336 (617)
T 3rg2_A          296 ESR---------------------------------------AQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGM  336 (617)
T ss_dssp             CCT---------------------------------------TTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEE
T ss_pred             ccc---------------------------------------ccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEecc
Confidence            100                                       01268999999999999999999999899999999999


Q ss_pred             ccccccee
Q psy6874         482 TETTSCAT  489 (504)
Q Consensus       482 TEt~~~~~  489 (504)
                      ||++..++
T Consensus       337 tE~~~~~~  344 (617)
T 3rg2_A          337 AEGLVNYT  344 (617)
T ss_dssp             TTEEEEEC
T ss_pred             Ccceeecc
Confidence            99875444

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=5.1e-43  Score=367.31  Aligned_cols=306  Identities=22%  Similarity=0.277  Sum_probs=240.5

Q ss_pred             HHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCC
Q psy6874          95 KVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETR  174 (504)
Q Consensus        95 ~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~  174 (504)
                      ++|++.++++|+++++....                    .+.+++||+||.++++++|++|+++|+++||+|+++++|+
T Consensus         4 ~l~~~~a~~~p~~~a~~~~~--------------------~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~   63 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIET--------------------AAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKS   63 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEEE--------------------TTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSC
T ss_pred             hHHHHHHHhCCCCceEEEec--------------------CCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC
Confidence            47888999999999986321                    2225799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcccccccC
Q psy6874         175 AEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFK  254 (504)
Q Consensus       175 ~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~  254 (504)
                      ++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+..+....+.  .++.++...         
T Consensus        64 ~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------  132 (503)
T 4fuq_A           64 VEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDG---------  132 (503)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTS---------
T ss_pred             HHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCc---------
Confidence            999999999999999999999999999999999999999999998766555444333222  233332210         


Q ss_pred             CCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEEecCh
Q psy6874         255 QGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPL  334 (504)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl  334 (504)
                          ...+.+.......   ........++|+++|+|||||||.||||+++|+++.+.+......+++.++|++++.+|+
T Consensus       133 ----~~~~~~~~~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~  205 (503)
T 4fuq_A          133 ----RGSLTDAAAGASE---AFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPI  205 (503)
T ss_dssp             ----CSHHHHHHHTSCS---CCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCS
T ss_pred             ----ccccchhhhcCCC---CcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCCh
Confidence                0112222211111   223345678999999999999999999999999999999998888999999999999999


Q ss_pred             HHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHH
Q psy6874         335 AHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALF  413 (504)
Q Consensus       335 ~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~  413 (504)
                      +|.+++.. .+.+++.|+++++.+.......        ++.++  ++|++.++|+++..+.+...              
T Consensus       206 ~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~--------~~~i~--~~t~~~~~P~~~~~l~~~~~--------------  261 (503)
T 4fuq_A          206 YHTHGLFVASNVTLFARGSMIFLPKFDPDKI--------LDLMA--RATVLMGVPTFYTRLLQSPR--------------  261 (503)
T ss_dssp             SSHCCCCCCHHHHHHTTCEEEECSSCCHHHH--------HHHHT--TCCEEEECHHHHHHHHTCTT--------------
T ss_pred             HHHHHHHHHHHHHHHhCCEEEEcCCCCHHHH--------HHHHh--hcCEEEEHHHHHHHHHhCCC--------------
Confidence            99998764 6788999999998765332222        11244  89999999999998865210              


Q ss_pred             HHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccccccccee
Q psy6874         414 AFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCAT  489 (504)
Q Consensus       414 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~  489 (504)
                                         .        .....+++|.+++||+++++++.+.++..+|++++++||+||++..++
T Consensus       262 -------------------~--------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~  310 (503)
T 4fuq_A          262 -------------------L--------TKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTS  310 (503)
T ss_dssp             -------------------C--------STTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBC
T ss_pred             -------------------c--------cccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccc
Confidence                               0        011126899999999999999999999999999999999999976543

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=2e-42  Score=390.25  Aligned_cols=327  Identities=20%  Similarity=0.293  Sum_probs=260.7

Q ss_pred             cCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy6874          87 RDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHN  166 (504)
Q Consensus        87 ~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~  166 (504)
                      .|...|+.++|++.++++||++|+++.                     .+.+++||+||.++++++|++|+++|+++||+
T Consensus        57 ~p~~~tl~~~l~~~a~~~pd~~Al~~~---------------------~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~  115 (979)
T 3tsy_A           57 IPNHLSLHDYIFQNISEFATKPCLING---------------------PTGHVYTYSDVHVISRQIAANFHKLGVNQNDV  115 (979)
T ss_dssp             CCTTSCHHHHHTTTGGGTTTSEEEEET---------------------TTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred             CCCCCCHHHHHHHHHHhCCCCeEEEEC---------------------CCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCE
Confidence            456679999999999999999999642                     11267999999999999999999999999999


Q ss_pred             EEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCC
Q psy6874         167 VVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLT  246 (504)
Q Consensus       167 Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~  246 (504)
                      |+|+++|+++|+++++||+++|++++|+++.++++++.+++++++++++|++.+..+.+..+.... .+ .++.++... 
T Consensus       116 V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~~~~~~~~-  192 (979)
T 3tsy_A          116 VMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-GV-VIVCIDDNE-  192 (979)
T ss_dssp             EEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-CC-EEEECCCCT-
T ss_pred             EEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-Cc-eEEEeCCcc-
Confidence            999999999999999999999999999999999999999999999999999998777666554432 22 344443320 


Q ss_pred             cccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhh----ccCC
Q psy6874         247 STDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD----AVHI  322 (504)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~  322 (504)
                           ..+.......+.++...........+.....++|+++|+|||||||.||||+++|+++++.+.....    .+.+
T Consensus       193 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~  267 (979)
T 3tsy_A          193 -----SVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYF  267 (979)
T ss_dssp             -----TSCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCC
T ss_pred             -----cccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccC
Confidence                 0111123455666544332211122334567899999999999999999999999999988776543    3467


Q ss_pred             CCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHH
Q psy6874         323 EPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEK  401 (504)
Q Consensus       323 ~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~  401 (504)
                      .++|++++++|++|++++.. .+.++..|+++++.+.......        ++.++++++|++.++|+++..+.+.... 
T Consensus       268 ~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~~-  338 (979)
T 3tsy_A          268 HSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLL--------LELIQRCKVTVAPMVPPIVLAIAKSSET-  338 (979)
T ss_dssp             CSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHH--------HHHHHHHTCCEEEECHHHHHHHHHCGGG-
T ss_pred             CCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHH--------HHHHHHhCCeEEEcHHHHHHHHHhCccc-
Confidence            89999999999999999975 6788999999999875443322        3358899999999999999988763110 


Q ss_pred             HhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeecc
Q psy6874         402 VSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYG  480 (504)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG  480 (504)
                                                              .....++||.+++||+++++++.++++..+ +++++++||
T Consensus       339 ----------------------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG  378 (979)
T 3tsy_A          339 ----------------------------------------EKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYG  378 (979)
T ss_dssp             ----------------------------------------GTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEE
T ss_pred             ----------------------------------------cCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeec
Confidence                                                    011236899999999999999999999888 899999999


Q ss_pred             ccccccceeec
Q psy6874         481 LTETTSCATVM  491 (504)
Q Consensus       481 ~TEt~~~~~~~  491 (504)
                      +||+++.++..
T Consensus       379 ~TE~~~~~~~~  389 (979)
T 3tsy_A          379 MTEAGPVLAMS  389 (979)
T ss_dssp             CGGGCSEEEEC
T ss_pred             hhhhhHHHHhC
Confidence            99998766654

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=2.7e-42  Score=366.44  Aligned_cols=301  Identities=20%  Similarity=0.233  Sum_probs=238.8

Q ss_pred             CCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeE
Q psy6874          88 DGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNV  167 (504)
Q Consensus        88 ~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V  167 (504)
                      +...++.++|++.++++||++|+.+.                       .+++||+||.++++++|++|+++|+++||+|
T Consensus        36 ~~~~~l~~~l~~~a~~~p~~~Al~~~-----------------------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V   92 (563)
T 1amu_A           36 PRDKTIHQLFEEQVSKRPNNVAIVCE-----------------------NEQLTYHELNVKANQLARIFIEKGIGKDTLV   92 (563)
T ss_dssp             CTTCCHHHHHHHHHHHCTTSEEEEET-----------------------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred             CCCCcHHHHHHHHHHHCCCCeEEEeC-----------------------CceecHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            34568999999999999999999632                       2679999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCc
Q psy6874         168 VIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTS  247 (504)
Q Consensus       168 ai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~  247 (504)
                      +++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+..    ......++.++..  .
T Consensus        93 ~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~----~~~~~~~~~~~~~--~  166 (563)
T 1amu_A           93 GIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN----IQFNGQVEIFEED--T  166 (563)
T ss_dssp             EEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT----SCCCSEEEECCCS--T
T ss_pred             EEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhh----ccccCceeeecch--h
Confidence            999999999999999999999999999999999999999999999999999875443322    1111122222211  0


Q ss_pred             ccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcE
Q psy6874         248 TDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDV  327 (504)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~  327 (504)
                                    +    .....   .....+..++|+++|+|||||||.||||++||+|+.+.+......+++.++|+
T Consensus       167 --------------~----~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~  225 (563)
T 1amu_A          167 --------------I----KIREG---TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDR  225 (563)
T ss_dssp             --------------T----TTSCC---SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCE
T ss_pred             --------------h----ccccC---ccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCE
Confidence                          0    00000   11223456789999999999999999999999999998888888889999999


Q ss_pred             EEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccCh
Q psy6874         328 FLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASP  407 (504)
Q Consensus       328 ~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~  407 (504)
                      +++++|++|..++...+.+++.|+++++.+.....+....     ++.++++++|++.++|+++..+...          
T Consensus       226 ~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----~~~i~~~~~t~~~~~P~~~~~l~~~----------  290 (563)
T 1amu_A          226 IGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKF-----EQYINQKEITVITLPPTYVVHLDPE----------  290 (563)
T ss_dssp             EEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHH-----HHHHHHTTCCEEEECHHHHTTSCTT----------
T ss_pred             EEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHH-----HHHHHHcCCcEEEeCHHHHHHHHhc----------
Confidence            9999999999998888899999999999876443333222     3358899999999999988765320          


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccc
Q psy6874         408 FKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSC  487 (504)
Q Consensus       408 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~  487 (504)
                                                           ...++|.+++||+++++++.+.++.  .++++++||+||+++.
T Consensus       291 -------------------------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~  331 (563)
T 1amu_A          291 -------------------------------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTIC  331 (563)
T ss_dssp             -------------------------------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSC
T ss_pred             -------------------------------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHh
Confidence                                                 0158999999999999999999976  4789999999999876


Q ss_pred             eeecc
Q psy6874         488 ATVMH  492 (504)
Q Consensus       488 ~~~~~  492 (504)
                      ++...
T Consensus       332 ~~~~~  336 (563)
T 1amu_A          332 ATTWV  336 (563)
T ss_dssp             SEEEE
T ss_pred             heeee
Confidence            66554

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=1.8e-42  Score=363.94  Aligned_cols=302  Identities=16%  Similarity=0.225  Sum_probs=248.4

Q ss_pred             cHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhC-CCCCCCeEEEE
Q psy6874          92 TMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSL-GQEPRHNVVIF  170 (504)
Q Consensus        92 tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gv~~gd~Vai~  170 (504)
                      |+.++|+++++++|+++|+.+.                       .+++||+||.++++++|++|.+. |.++|++|+++
T Consensus         2 ~l~~~l~~~a~~~p~~~Al~~~-----------------------~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~   58 (511)
T 3e7w_A            2 KLLHAIQTHAETYPQTDAFRSQ-----------------------GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVY   58 (511)
T ss_dssp             CHHHHHHHHHHHSTTSEEEEET-----------------------TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEE
T ss_pred             cHHHHHHHHHHHCCCCeEEEcC-----------------------CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEE
Confidence            6889999999999999999632                       26899999999999999999874 88999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcccc
Q psy6874         171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDT  250 (504)
Q Consensus       171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~  250 (504)
                      ++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++....      ..                  
T Consensus        59 ~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~------------------  114 (511)
T 3e7w_A           59 GHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSID------AV------------------  114 (511)
T ss_dssp             ESSCHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CC------------------
T ss_pred             ecCCHHHHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccch------hc------------------
Confidence            999999999999999999999999999999999999999999999997653210      00                  


Q ss_pred             cccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEE
Q psy6874         251 TNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLG  330 (504)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~  330 (504)
                         ........++++.......  ........++|+++|+|||||||.||||+++|.++.+.+......+++.++|++++
T Consensus       115 ---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~  189 (511)
T 3e7w_A          115 ---GQQIQTVSAEELLENEGGS--VSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLN  189 (511)
T ss_dssp             ---CCSSCEEEHHHHHTSCSCC--CCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEE
T ss_pred             ---ccccceecHhhhhccccCC--ccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEE
Confidence               0112344555655433221  22223456789999999999999999999999999999998888889999999999


Q ss_pred             ecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHH
Q psy6874         331 YLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKR  410 (504)
Q Consensus       331 ~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~  410 (504)
                      ++|++|.+++...+.++..|+++++.+.....+....     ++.++++++|++.++|+++..+.+...           
T Consensus       190 ~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----~~~i~~~~~t~~~~~P~~~~~l~~~~~-----------  253 (511)
T 3e7w_A          190 QAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVL-----FEELKKSGLNVWTSTPSFVQMCLMDPG-----------  253 (511)
T ss_dssp             CSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHH-----HHHHHHHCCSEEEECHHHHHHHHTSTT-----------
T ss_pred             eCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHH-----HHHHHHcCCcEEEecHHHHHHHHhccc-----------
Confidence            9999999998888899999999999776433333222     335889999999999999988765210           


Q ss_pred             HHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeecccccccccee
Q psy6874         411 ALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTSCAT  489 (504)
Q Consensus       411 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~~~~  489 (504)
                                            .        .....+++|.+++||+++++++.+.+++.+ +++++++||+||+++.++
T Consensus       254 ----------------------~--------~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~  303 (511)
T 3e7w_A          254 ----------------------F--------SQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVT  303 (511)
T ss_dssp             ----------------------C--------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSE
T ss_pred             ----------------------c--------ccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeee
Confidence                                  0        011126899999999999999999999888 899999999999987766


Q ss_pred             ec
Q psy6874         490 VM  491 (504)
Q Consensus       490 ~~  491 (504)
                      ..
T Consensus       304 ~~  305 (511)
T 3e7w_A          304 SV  305 (511)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=6.5e-42  Score=364.38  Aligned_cols=299  Identities=21%  Similarity=0.235  Sum_probs=240.8

Q ss_pred             CCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeE
Q psy6874          88 DGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNV  167 (504)
Q Consensus        88 ~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V  167 (504)
                      +...++.++|++.++++||++|+.+.                       .+.+||+||.++++++|++|+++|+++||+|
T Consensus        72 ~~~~~l~~~l~~~a~~~pd~~A~~~~-----------------------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V  128 (570)
T 4gr5_A           72 PAGACVHELFEAQAARAPDAVALLHE-----------------------ADELTYGALNERANRLAHRLVGLGVAPGTLV  128 (570)
T ss_dssp             CCSCCHHHHHHHHHHHCTTSEEEEET-----------------------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred             CccCCHHHHHHHHHHHCCCCeEEECC-----------------------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            34568999999999999999999632                       2679999999999999999999999999999


Q ss_pred             EEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCc
Q psy6874         168 VIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTS  247 (504)
Q Consensus       168 ai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~  247 (504)
                      +|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+....       .+....++..+..   
T Consensus       129 ~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~---  198 (570)
T 4gr5_A          129 GVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGR-------LTGTTTLYVEDEA---  198 (570)
T ss_dssp             EEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTS-------SCSSEEEECCC-----
T ss_pred             EEEeCCCHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhc-------ccCCcceeeeccc---
Confidence            999999999999999999999999999999999999999999999999999865432       1222222211111   


Q ss_pred             ccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcE
Q psy6874         248 TDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDV  327 (504)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~  327 (504)
                                        . .....  ........++|+++|+|||||||.||||+++|+++.+.+.. .....+.++|+
T Consensus       199 ------------------~-~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~  256 (570)
T 4gr5_A          199 ------------------A-SDAPA--GNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEV  256 (570)
T ss_dssp             ------------------------C--CCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCE
T ss_pred             ------------------c-ccccc--cccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCE
Confidence                              0 00000  22233457799999999999999999999999999877665 35568889999


Q ss_pred             EEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccCh
Q psy6874         328 FLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASP  407 (504)
Q Consensus       328 ~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~  407 (504)
                      +++++|++|..+....+.+++.|+++++.+... .+....     ++.++++++|++.++|+++..+.+...+       
T Consensus       257 ~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~-~~~~~~-----~~~i~~~~vt~~~~~P~~~~~l~~~~~~-------  323 (570)
T 4gr5_A          257 FLQCSPVSWDAFGLELFGALLFGARCVLQSGQN-PDPLEI-----GELVARHGVTMLQLSASLFNFLVDEVPE-------  323 (570)
T ss_dssp             EEECSCTTSSTHHHHHHHHHTTTCEEEECSSSS-CCHHHH-----HHHHHHHTCCEEEEEHHHHHHHHHHCGG-------
T ss_pred             EEEecCccHHHHHHHHHHHHhcCCEEEEcCCcc-CCHHHH-----HHHHHHcCCcEEEecHHHHHHHHhhchh-------
Confidence            999999999877777888999999999876432 221111     3358899999999999999998763110       


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeecccccccc
Q psy6874         408 FKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTS  486 (504)
Q Consensus       408 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~  486 (504)
                                                           ..++||.+++||+++++++.+.++..+ +++++++||+||+++
T Consensus       324 -------------------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~  366 (570)
T 4gr5_A          324 -------------------------------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMG  366 (570)
T ss_dssp             -------------------------------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCS
T ss_pred             -------------------------------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhhee
Confidence                                                 016899999999999999988887766 899999999999987


Q ss_pred             ceeec
Q psy6874         487 CATVM  491 (504)
Q Consensus       487 ~~~~~  491 (504)
                      .++..
T Consensus       367 ~~~~~  371 (570)
T 4gr5_A          367 FTTHH  371 (570)
T ss_dssp             CSEEE
T ss_pred             eeeee
Confidence            76654

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=2.5e-42  Score=369.46  Aligned_cols=323  Identities=19%  Similarity=0.260  Sum_probs=251.9

Q ss_pred             cCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy6874          87 RDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHN  166 (504)
Q Consensus        87 ~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~  166 (504)
                      .+...|+.++|++.++++||++|+.+.+                   .+..+++||+||.++++++|++|+++|+++||+
T Consensus         7 ~~~~~tl~~~l~~~a~~~p~~~a~~~~~-------------------~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~   67 (590)
T 3kxw_A            7 YLQCQSLVDVVRLRALHSPNKKSCTFLN-------------------KELEETMTYEQLDQHAKAIAATLQAEGAKPGDR   67 (590)
T ss_dssp             HHTCSSHHHHHHHHHHHCTTSEEEEEEE-------------------TTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred             hcCcccHHHHHHHHHHhCCCCeEEEEEc-------------------CCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence            3456789999999999999999997542                   123478999999999999999999999999999


Q ss_pred             EEEEcCCCHHHHHHHHHHHhCCCeEEEecCCC---CHHHHHHhHhcccccEEEEcCCchhHHHHHh-hcCCCceEEEEEc
Q psy6874         167 VVIFAETRAEWMIAAQACFKQNIPVVTIYATL---GEEAIAHGINETEVNIVITTHDLLPKFRNIL-KLTPRVSTLIYME  242 (504)
Q Consensus       167 Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~l~~ii~~~  242 (504)
                      |+++++|+++|+++++||+++|++++|+++.+   ..+++.++++.+++++++++.+..+.+.... ...+....+    
T Consensus        68 V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~----  143 (590)
T 3kxw_A           68 VLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKI----  143 (590)
T ss_dssp             EEEECCSSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTE----
T ss_pred             EEEEcCCchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccc----
Confidence            99999999999999999999999999999988   4578999999999999999877554432211 111111111    


Q ss_pred             CCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCC
Q psy6874         243 DQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHI  322 (504)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~  322 (504)
                                     .+...+++......   ........++|+++|+|||||||.||||++||+++++.+......+++
T Consensus       144 ---------------~~~~~~~~~~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~  205 (590)
T 3kxw_A          144 ---------------PAIALESIELNRSS---SWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHM  205 (590)
T ss_dssp             ---------------EEEEGGGCCGGGGG---GCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTC
T ss_pred             ---------------ceeechhccccccc---cCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCC
Confidence                           11122221111111   222345678999999999999999999999999999999999888999


Q ss_pred             CCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHH
Q psy6874         323 EPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEK  401 (504)
Q Consensus       323 ~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~  401 (504)
                      .++|++++++|++|++++.. ++.+++.|+++++.++.........+    ++.++++++|++.++|.++..+.+.+...
T Consensus       206 ~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~----~~~i~~~~~t~~~~~p~~~~~l~~~~~~~  281 (590)
T 3kxw_A          206 NDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSW----LKHITKYKATISGSPNFAYDYCVKRIREE  281 (590)
T ss_dssp             CTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHH----HHHHHHHTCSEEEECTHHHHHHHHHCCGG
T ss_pred             CCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHH----HHHHHHhCCeeecCChhHHHHHHHHhhhh
Confidence            99999999999999999986 78999999999998765332111111    33588999999999999999887642211


Q ss_pred             HhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhC------Cce
Q psy6874         402 VSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLC------EKV  475 (504)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~------~~v  475 (504)
                      ..                                      .....++||.+++||+++++++.+.++..++      +++
T Consensus       282 ~~--------------------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~  323 (590)
T 3kxw_A          282 KK--------------------------------------EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAF  323 (590)
T ss_dssp             GG--------------------------------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGE
T ss_pred             hc--------------------------------------cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccc
Confidence            10                                      1112378999999999999999999998873      479


Q ss_pred             eeeccccccccceeecc
Q psy6874         476 IQGYGLTETTSCATVMH  492 (504)
Q Consensus       476 ~~~YG~TEt~~~~~~~~  492 (504)
                      +++||+||+++.++...
T Consensus       324 ~~~YG~TE~~~~~~~~~  340 (590)
T 3kxw_A          324 YPCYGLAEATLLVTGGT  340 (590)
T ss_dssp             EEEEECGGGSSEEEECC
T ss_pred             ccccccccccceeeccc
Confidence            99999999988777543

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=5.3e-42  Score=361.38  Aligned_cols=304  Identities=17%  Similarity=0.191  Sum_probs=243.3

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ..|+.++|++.++++|+++|+.+.                       .+.+||+||.++++++|++|.++|+++||+|++
T Consensus         3 ~~~l~~~l~~~a~~~p~~~a~~~~-----------------------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i   59 (521)
T 3l8c_A            3 LKDMIDSIEQFAQTQADFPVYDCL-----------------------GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLV   59 (521)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEET-----------------------TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEE
T ss_pred             HHHHHHHHHHHHHHCCCCcceecC-----------------------CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            458999999999999999999632                       267999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD  249 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~  249 (504)
                      +++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++....+       .                
T Consensus        60 ~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~-------~----------------  116 (521)
T 3l8c_A           60 FGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI-------E----------------  116 (521)
T ss_dssp             EECSSHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC-------T----------------
T ss_pred             EeCCCHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc-------c----------------
Confidence            99999999999999999999999999999999999999999999999987643211       0                


Q ss_pred             ccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhc--cCCCCCcE
Q psy6874         250 TTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA--VHIEPNDV  327 (504)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~d~  327 (504)
                            +.....+.++.................++|+++|+|||||||.||||+++|+|+.+.+......  +.+.++|+
T Consensus       117 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~  190 (521)
T 3l8c_A          117 ------GISLVSLSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQ  190 (521)
T ss_dssp             ------TSEEEEHHHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCE
T ss_pred             ------cCcccchhhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCe
Confidence                  1123334443322211111223345678999999999999999999999999999887776655  67789999


Q ss_pred             EEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccCh
Q psy6874         328 FLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASP  407 (504)
Q Consensus       328 ~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~  407 (504)
                      +++..|++|..++...+.++..|+++++.+.....+....     +..+.++++|++.++|+++..+......       
T Consensus       191 ~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------  258 (521)
T 3l8c_A          191 MLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQL-----FTTIAQLPVGIWTSTPSFADMAMLSDDF-------  258 (521)
T ss_dssp             EECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHH-----HHHHHHSCCSEEEECHHHHHHHHTSTTC-------
T ss_pred             EEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHH-----HHHHHHcCCcEEEeCCCHHHHHhhhhcc-------
Confidence            9999999999998888899999999998876543333222     3358899999999999999877542100       


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeecccccccc
Q psy6874         408 FKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTS  486 (504)
Q Consensus       408 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~  486 (504)
                                                        .....+++|.+++||+++++++.+.+.+.+ +++++++||+||+++
T Consensus       259 ----------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~  304 (521)
T 3l8c_A          259 ----------------------------------CQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATV  304 (521)
T ss_dssp             ----------------------------------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSS
T ss_pred             ----------------------------------ccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhh
Confidence                                              001126899999999999999999998887 899999999999987


Q ss_pred             ceeec
Q psy6874         487 CATVM  491 (504)
Q Consensus       487 ~~~~~  491 (504)
                      .++..
T Consensus       305 ~~~~~  309 (521)
T 3l8c_A          305 ALSAI  309 (521)
T ss_dssp             CSEEE
T ss_pred             hhcee
Confidence            76654

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=1.4e-41  Score=364.36  Aligned_cols=296  Identities=16%  Similarity=0.138  Sum_probs=237.1

Q ss_pred             CCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEE
Q psy6874          89 GVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVV  168 (504)
Q Consensus        89 ~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Va  168 (504)
                      ...|+.++|++.++++||++|+.+.                       .+.+||+||.++++++|++|++.|+++||+|+
T Consensus        25 ~~~tl~~~~~~~a~~~Pd~~Av~~~-----------------------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~   81 (620)
T 4dg8_A           25 AHPTVVARFSEMAALHPHREAIRDR-----------------------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLG   81 (620)
T ss_dssp             GSCCHHHHHHHHHHHCTTSEEEEET-----------------------TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEE
T ss_pred             CCCCHHHHHHHHHHhCCCCeEEEcC-----------------------CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            3568999999999999999999632                       26799999999999999999999999999999


Q ss_pred             EEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcc
Q psy6874         169 IFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTST  248 (504)
Q Consensus       169 i~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~  248 (504)
                      ++++|+++|+++++||+++|++++|+++.++.+++.++++++++++++++.......       .....+          
T Consensus        82 i~~~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~-------~~~~~~----------  144 (620)
T 4dg8_A           82 VYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA-------NGLPCV----------  144 (620)
T ss_dssp             EESSSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC-------TTSCEE----------
T ss_pred             EEeCCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc-------cCCcee----------
Confidence            999999999999999999999999999999999999999999999999765432210       011100          


Q ss_pred             cccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEE
Q psy6874         249 DTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVF  328 (504)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~  328 (504)
                                  .....   .... .........++|+++|+|||||||.||||+++|+++.+.+.. ...+.+.++|++
T Consensus       145 ------------~~~~~---~~~~-~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~  207 (620)
T 4dg8_A          145 ------------PVRHL---PAAP-ASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRF  207 (620)
T ss_dssp             ------------EGGGC---CCCC-CCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEE
T ss_pred             ------------eeccC---CcCC-ccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEE
Confidence                        00000   0000 012222346799999999999999999999999999887765 456788999999


Q ss_pred             EEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChH
Q psy6874         329 LGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPF  408 (504)
Q Consensus       329 l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~  408 (504)
                      ++++|++|..++..++.+++.|+++++.+.. ..+....     .+.++++++|++.++|+++..+.+...         
T Consensus       208 l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~-~~~~~~~-----~~~i~~~~vt~~~~~Ps~~~~l~~~~~---------  272 (620)
T 4dg8_A          208 LVNSPLSFDAATLEIWGALLNGGCCVLNDLG-PLDPGVL-----RQLIGERGADSAWLTASLFNTLVDLDP---------  272 (620)
T ss_dssp             EECSCTTSTHHHHHHHHHHTTTCEEEECCSS-SCCHHHH-----HHHHHTTCCCEEEEEHHHHHHHHHHCG---------
T ss_pred             EEECccCHHHHHHHHHHHHhcCCEEEeCccc-cCCHHHH-----HHHHHHhCCcEEEccHHHHHHHHhcCh---------
Confidence            9999999999998889999999999986422 2222222     335889999999999999998865200         


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeeccccccccc
Q psy6874         409 KRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTSC  487 (504)
Q Consensus       409 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~~  487 (504)
                                                         ...++||.+++||++++++..+.+...+ +++++|+||+||+++.
T Consensus       273 -----------------------------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~  317 (620)
T 4dg8_A          273 -----------------------------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTF  317 (620)
T ss_dssp             -----------------------------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSC
T ss_pred             -----------------------------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhh
Confidence                                               0126899999999999988887776554 8999999999999877


Q ss_pred             eeec
Q psy6874         488 ATVM  491 (504)
Q Consensus       488 ~~~~  491 (504)
                      ++..
T Consensus       318 ~~~~  321 (620)
T 4dg8_A          318 TCCH  321 (620)
T ss_dssp             SEEE
T ss_pred             eEEE
Confidence            6654

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.8e-42  Score=363.13  Aligned_cols=316  Identities=19%  Similarity=0.204  Sum_probs=237.2

Q ss_pred             cHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEc
Q psy6874          92 TMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFA  171 (504)
Q Consensus        92 tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~  171 (504)
                      |+.++|+++++++||++|+.+.                       .+++||+||.++++++|++|++.   +||+|++++
T Consensus         2 tl~~~l~~~a~~~pd~~Al~~~-----------------------~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~   55 (501)
T 3ipl_A            2 SLDFWLYKQAQQNGHHIAITDG-----------------------QESYTYQNLYCEASLLAKRLKAY---QQSRVGLYI   55 (501)
T ss_dssp             -CCCHHHHHHHHHTTSEEEECS-----------------------SCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEEC
T ss_pred             CHHHHHHHHHHhcCCceEEEeC-----------------------CcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEc
Confidence            5667899999999999999632                       26799999999999999999987   899999999


Q ss_pred             CCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccccc
Q psy6874         172 ETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTT  251 (504)
Q Consensus       172 ~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~  251 (504)
                      +|+++|+++++||+++|++++|+++.++++++.+++++++++++|++.+......... ....++.+......  . ...
T Consensus        56 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~-~~~  131 (501)
T 3ipl_A           56 DNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIV-SLDDIEFAGRDITT--N-GLL  131 (501)
T ss_dssp             CSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEE-ETTC-----------------
T ss_pred             CCCHHHHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccc-ccccceeeeeeccc--c-ccc
Confidence            9999999999999999999999999999999999999999999999987543321111 01111111111000  0 000


Q ss_pred             ccCCCceee-ehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEE
Q psy6874         252 NFKQGIEIV-PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLG  330 (504)
Q Consensus       252 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~  330 (504)
                      ......... ..+.........  ........++|+++|+|||||||.||||+++|.++.+.+......+++.++|++++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~  209 (501)
T 3ipl_A          132 DNTMGIQYDTSNETVVPKESPS--NILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLS  209 (501)
T ss_dssp             ------------------CCHH--HHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEE
T ss_pred             ccccccccccchhhccccCCcc--cccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEE
Confidence            000000000 001111000000  11223457899999999999999999999999999999999888889999999999


Q ss_pred             ecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHH
Q psy6874         331 YLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKR  410 (504)
Q Consensus       331 ~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~  410 (504)
                      ++|++|++++...+.+++.|+++++.+.......        ++.++++++|++.++|+++..+.+....          
T Consensus       210 ~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------  271 (501)
T 3ipl_A          210 VLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQI--------LTMIKNERITHISLVPQTLNWLMQQGLH----------  271 (501)
T ss_dssp             CSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHH--------HHHHHHSCCCEEEECHHHHHHHHHHTCC----------
T ss_pred             eCcHHHHHHHHHHHHHHHcCceEEeCCCCCHHHH--------HHHHHHcCCcEEEchHHHHHHHHhcCCC----------
Confidence            9999999999988899999999999875433222        3358899999999999999998763100          


Q ss_pred             HHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccceee
Q psy6874         411 ALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATV  490 (504)
Q Consensus       411 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~~  490 (504)
                                                        ...+||.+++||+++++++.+.++. ++++++++||+||+++.++.
T Consensus       272 ----------------------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~  316 (501)
T 3ipl_A          272 ----------------------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLT  316 (501)
T ss_dssp             ----------------------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEE
T ss_pred             ----------------------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceee
Confidence                                              0127999999999999999999987 59999999999999875554


Q ss_pred             cc
Q psy6874         491 MH  492 (504)
Q Consensus       491 ~~  492 (504)
                      ..
T Consensus       317 ~~  318 (501)
T 3ipl_A          317 AT  318 (501)
T ss_dssp             EC
T ss_pred             cC
Confidence            43

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=6.8e-41  Score=356.15  Aligned_cols=318  Identities=15%  Similarity=0.122  Sum_probs=239.9

Q ss_pred             cCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy6874          87 RDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHN  166 (504)
Q Consensus        87 ~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~  166 (504)
                      +....|+.++|+++++++||++|+.+.+-..             ....+..+.+||+||.++++++|+.|.+.|+ +||+
T Consensus        16 ~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~-------------~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~   81 (562)
T 3ite_A           16 YTSTVPPSHYIETWAKTHPEWKAVEVATGFL-------------GSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRA   81 (562)
T ss_dssp             --CCCCTTHHHHHHHHHCTTSEEEEEEECC------------------CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCE
T ss_pred             ecccCCHHHHHHHHHHHCCCchhhhcccccc-------------cccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCE
Confidence            3445688999999999999999997532000             0011234789999999999999999999999 7999


Q ss_pred             EEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCC
Q psy6874         167 VVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLT  246 (504)
Q Consensus       167 Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~  246 (504)
                      |+++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++....+     ..+....++..+.   
T Consensus        82 V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~---  153 (562)
T 3ite_A           82 IAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTKN---  153 (562)
T ss_dssp             EEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETTC---
T ss_pred             EEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeecccc---
Confidence            99999999999999999999999999999999999999999999999999987654321     1111111111110   


Q ss_pred             cccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhc-------
Q psy6874         247 STDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDA-------  319 (504)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~-------  319 (504)
                                   ..+.+.......   ........++++++|+|||||||.||||+++|+++.+.+......       
T Consensus       154 -------------~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~  217 (562)
T 3ite_A          154 -------------QSFIENLSTQDT---SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPK  217 (562)
T ss_dssp             -------------HHHHHHHHHSCC---SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGG
T ss_pred             -------------hhhhhhcccccc---cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccch
Confidence                         112222222211   222234457899999999999999999999999998877665432       


Q ss_pred             -cCCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHH
Q psy6874         320 -VHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGV  398 (504)
Q Consensus       320 -~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~  398 (504)
                       ..+...|++++..|++|..++...+.++..|+++++.+.....+..       ...++++++|++.++|++++.+... 
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~-------~~~i~~~~~t~~~~~P~~l~~~~~~-  289 (562)
T 3ite_A          218 SLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDL-------PRTFRELGVTHAGIVPSLLDQTGLV-  289 (562)
T ss_dssp             GGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSH-------HHHHHHTTCCEEEECHHHHHHHTCC-
T ss_pred             hcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHH-------HHHHHHcCCCEEEcCHHHHhhcccC-
Confidence             4578899999999999999888888899999999987654432221       2358899999999999987654210 


Q ss_pred             HHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeee
Q psy6874         399 HEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQG  478 (504)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~  478 (504)
                                                                  ....++||.+++||+++++++.+.++..++++++++
T Consensus       290 --------------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~  325 (562)
T 3ite_A          290 --------------------------------------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNV  325 (562)
T ss_dssp             --------------------------------------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEE
T ss_pred             --------------------------------------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEe
Confidence                                                        001268999999999999999999998889999999


Q ss_pred             ccccccccceeecccC
Q psy6874         479 YGLTETTSCATVMHLN  494 (504)
Q Consensus       479 YG~TEt~~~~~~~~~~  494 (504)
                      ||+||+++.++.....
T Consensus       326 YG~TE~~~~~~~~~~~  341 (562)
T 3ite_A          326 YGPTEVTIGCSAGRIL  341 (562)
T ss_dssp             ECCGGGCSCSEEEECC
T ss_pred             eccchheeeeeeeeec
Confidence            9999998776665443

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=2.4e-39  Score=374.28  Aligned_cols=303  Identities=20%  Similarity=0.252  Sum_probs=245.8

Q ss_pred             CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Q psy6874          91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIF  170 (504)
Q Consensus        91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~  170 (504)
                      .++.++|++.++++||++|+.+.                       .+.+||+||.++++++|+.|++.|+++|++|+|+
T Consensus       464 ~~l~~~~~~~~~~~p~~~Av~~~-----------------------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~  520 (1304)
T 2vsq_A          464 KPLTYWFKEAVNANPDAPALTYS-----------------------GQTLSYRELDEEANRIARRLQKHGAGKGSVVALY  520 (1304)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEESS-----------------------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred             CCHHHHHHHHHHhCCCCeEEEEC-----------------------CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEE
Confidence            58999999999999999999632                       2579999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcccc
Q psy6874         171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDT  250 (504)
Q Consensus       171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~  250 (504)
                      ++|+++++++++||+++|++++|+++.++.+++.++++++++++++++.+..+.+.    ..+.....+.+++.      
T Consensus       521 ~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~~~~~~~~~------  590 (1304)
T 2vsq_A          521 TKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPYTGTTLFIDDQ------  590 (1304)
T ss_dssp             CCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCCCSEEEESSCG------
T ss_pred             eCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCCCCcEEEeccc------
Confidence            99999999999999999999999999999999999999999999999987543321    12222233332221      


Q ss_pred             cccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEE
Q psy6874         251 TNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLG  330 (504)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~  330 (504)
                                  ...   ....  ..+.....++++++|+|||||||.||||+++|+|+.+. ......+.+.++|+++.
T Consensus       591 ------------~~~---~~~~--~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~  652 (1304)
T 2vsq_A          591 ------------TRF---EEQA--SDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLS  652 (1304)
T ss_dssp             ------------GGG---GSCS--SCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEE
T ss_pred             ------------ccc---cccc--CCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEE
Confidence                        000   0000  22233457899999999999999999999999999876 44556678899999999


Q ss_pred             ecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHH
Q psy6874         331 YLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKR  410 (504)
Q Consensus       331 ~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~  410 (504)
                      +.|++|..+...++.+++.|+++++.+.....+....     .+.++++++|++.++|+++..+.+....          
T Consensus       653 ~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l-----~~~i~~~~vt~~~~~p~~~~~l~~~~~~----------  717 (1304)
T 2vsq_A          653 VSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERL-----TDLILQENVNVMFATTALFNLLTDAGED----------  717 (1304)
T ss_dssp             CSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHH-----HHHHHHHTCCEEEEEHHHHHHHHHHCSH----------
T ss_pred             ECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHH-----HHHHHHcCCcEEEccHHHHHHHHhhchh----------
Confidence            9999999988888999999999999887655554333     3358899999999999999988652100          


Q ss_pred             HHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHh-CCceeeecccccccccee
Q psy6874         411 ALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL-CEKVIQGYGLTETTSCAT  489 (504)
Q Consensus       411 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~YG~TEt~~~~~  489 (504)
                                                .        .++||.+++||+++++++.+.+...+ +++++|+||+||+++.++
T Consensus       718 --------------------------~--------~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~  763 (1304)
T 2vsq_A          718 --------------------------W--------MKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFAT  763 (1304)
T ss_dssp             --------------------------H--------HHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSE
T ss_pred             --------------------------c--------CCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHhe
Confidence                                      0        04799999999999999999887776 478999999999988777


Q ss_pred             eccc
Q psy6874         490 VMHL  493 (504)
Q Consensus       490 ~~~~  493 (504)
                      ....
T Consensus       764 ~~~~  767 (1304)
T 2vsq_A          764 AHVV  767 (1304)
T ss_dssp             EEEC
T ss_pred             eeec
Confidence            6543

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=1.8e-40  Score=347.98  Aligned_cols=307  Identities=22%  Similarity=0.261  Sum_probs=234.3

Q ss_pred             CCCCcHHHHHHHHHHhCCC-CcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy6874          88 DGVDTMEKVLRYVVTRFSD-QRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHN  166 (504)
Q Consensus        88 ~~~~tl~~~~~~~~~~~p~-~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~  166 (504)
                      ..+.++.+.|+++++++|+ ++|+.+.                      + +.+||+||.++++++|++|.     .|++
T Consensus        19 ~~~~tl~~~l~~~a~~~p~d~~Al~~~----------------------~-~~~Ty~eL~~~~~~~A~~L~-----~~~~   70 (505)
T 3nyq_A           19 SHMSSLFPALSPAPTGAPADRPALRFG----------------------E-RSLTYAELAAAAGATAGRIG-----GAGR   70 (505)
T ss_dssp             -----CCTTTSSCCCSGGGGSEEEEET----------------------T-EEEEHHHHHHHHHHHHTTCC--------C
T ss_pred             cccchhHHHHHHHHHhCCCCCeEEEEC----------------------C-eeeeHHHHHHHHHHHHhhcc-----CCCE
Confidence            3466788888888888887 9999632                      2 68999999999999999874     3889


Q ss_pred             EEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCC
Q psy6874         167 VVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLT  246 (504)
Q Consensus       167 Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~  246 (504)
                      |+++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+...  .   .....+..+. ++..  
T Consensus        71 V~i~~~~~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~--~---~~~~~~~~~~-~~~~--  142 (505)
T 3nyq_A           71 VAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL--P---PALGALERVD-VDVR--  142 (505)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC--C---GGGTTSEEEE-CCTT--
T ss_pred             EEEEcCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc--c---hhhccccccc-cccc--
Confidence            999999999999999999999999999999999999999999999999999865210  0   0111222111 1110  


Q ss_pred             cccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCc
Q psy6874         247 STDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPND  326 (504)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d  326 (504)
                                            .. .  ..+.....++|+++|+|||||||.||||+++|+++.+.+......+++.++|
T Consensus       143 ----------------------~~-~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d  197 (505)
T 3nyq_A          143 ----------------------AR-G--AVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGED  197 (505)
T ss_dssp             ----------------------CC-C--CCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTC
T ss_pred             ----------------------cc-c--CCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCc
Confidence                                  00 0  1222345678999999999999999999999999999999988888999999


Q ss_pred             EEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhcc
Q psy6874         327 VFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRA  405 (504)
Q Consensus       327 ~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~  405 (504)
                      ++++.+|++|..++.. ++.++..|+++++.+.......        +..+ ++++|++.++|+++..+.+......   
T Consensus       198 ~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~--------~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~---  265 (505)
T 3nyq_A          198 VLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGA--------AREL-NDGATMLFGVPTMYHRIAETLPADP---  265 (505)
T ss_dssp             EEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHH--------HHHH-TTTCCEEEECHHHHHHHHHHGGGCH---
T ss_pred             EEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHH--------HHHH-hhCCeEEEehHHHHHHHHHhhhcCc---
Confidence            9999999999999874 7899999999998865433322        1235 6799999999999999876421110   


Q ss_pred             ChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccc
Q psy6874         406 SPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETT  485 (504)
Q Consensus       406 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~  485 (504)
                       ..                                  ....+++|.+++||+++++++.++++..+++++++.||+||++
T Consensus       266 -~~----------------------------------~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~  310 (505)
T 3nyq_A          266 -EL----------------------------------AKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETL  310 (505)
T ss_dssp             -HH----------------------------------HHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTE
T ss_pred             -hh----------------------------------hcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcc
Confidence             00                                  0011479999999999999999999998999999999999998


Q ss_pred             cceeecccCCCCCccCCC
Q psy6874         486 SCATVMHLNDMGNINSNG  503 (504)
Q Consensus       486 ~~~~~~~~~d~~~~~s~G  503 (504)
                      +.++..... ....+++|
T Consensus       311 ~~~~~~~~~-~~~~~~vG  327 (505)
T 3nyq_A          311 MNTSVRADG-EPRAGTVG  327 (505)
T ss_dssp             EEEECCTTS-CCCTTCCC
T ss_pred             cccccCCCC-CCCCCCcc
Confidence            665554332 23444555

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.94  E-value=6.7e-27  Score=233.82  Aligned_cols=160  Identities=23%  Similarity=0.278  Sum_probs=136.7

Q ss_pred             CCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccc
Q psy6874         283 PKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMI  362 (504)
Q Consensus       283 ~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~  362 (504)
                      .+|+++|+|||||||.||||++||+|+.+.+......++++++|++++++|++|++++...+.+++.|+++++.++..  
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~--  113 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTA--  113 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCS--
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccc--
Confidence            378999999999999999999999999999999989999999999999999999999998889999999999876532  


Q ss_pred             cchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHH
Q psy6874         363 DTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTK  442 (504)
Q Consensus       363 ~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~  442 (504)
                      +.        +..++++++|++.++|+++..+.+....                                          
T Consensus       114 ~~--------~~~i~~~~~t~~~~~P~~l~~ll~~~~~------------------------------------------  143 (358)
T 4gs5_A          114 NP--------LAGLDHADFDFVAMVPMQLQSILENSAT------------------------------------------  143 (358)
T ss_dssp             CT--------TTTCSSCCCSEEEECHHHHHHHHHCTTT------------------------------------------
T ss_pred             cH--------HHHHHHhCCeEEEcChHHHHHhhccccc------------------------------------------
Confidence            11        2358899999999999999998763110                                          


Q ss_pred             HhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccceeecccCC
Q psy6874         443 KLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSCATVMHLND  495 (504)
Q Consensus       443 ~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~~~~~~~~d  495 (504)
                      ....++||.+++||+++++++.++++. ++++++++||+||+++.++....++
T Consensus       144 ~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~  195 (358)
T 4gs5_A          144 SGQVDRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNG  195 (358)
T ss_dssp             GGGGGGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSS
T ss_pred             cccCCcceEEEEcccCCCchheecccc-cCceEEeccccccccceeecccccc
Confidence            001268999999999999999999987 5999999999999988777765544

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.88  E-value=2.2e-22  Score=206.70  Aligned_cols=161  Identities=20%  Similarity=0.161  Sum_probs=129.9

Q ss_pred             CCCC-CCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhh---ccCCCCCcEEEEecChHHHHHHH-HHHHHHHhCCeEE
Q psy6874         280 PPTP-KDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD---AVHIEPNDVFLGYLPLAHVFELL-SESVCLLCGVAIG  354 (504)
Q Consensus       280 ~~~~-~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~v~  354 (504)
                      ...+ +++++|+|||||||.||||+++|.++.+....+..   ..++.++|++++++|+.|..+.+ ..+.++..|++++
T Consensus        81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~  160 (436)
T 3qov_A           81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV  160 (436)
T ss_dssp             CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred             cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence            3455 89999999999999999999999999877665533   44889999999999998766655 4678899999999


Q ss_pred             EcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhh
Q psy6874         355 YSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLID  434 (504)
Q Consensus       355 ~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~  434 (504)
                      +.+.......        ++.+++++||++.++|+++..+.+.........                             
T Consensus       161 ~~~~~~~~~~--------~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~-----------------------------  203 (436)
T 3qov_A          161 PAAAGNSKRQ--------IKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP-----------------------------  203 (436)
T ss_dssp             CCCSCCHHHH--------HHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT-----------------------------
T ss_pred             eCCCCCHHHH--------HHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------
Confidence            8765433222        335889999999999999999987543221100                             


Q ss_pred             HHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccc
Q psy6874         435 KVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSC  487 (504)
Q Consensus       435 ~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~  487 (504)
                                ..+++|.+++||+++++++.++++..||++++++||+||+++.
T Consensus       204 ----------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~  246 (436)
T 3qov_A          204 ----------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGP  246 (436)
T ss_dssp             ----------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEE
T ss_pred             ----------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCC
Confidence                      0268999999999999999999999999999999999999654

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.88  E-value=3.6e-22  Score=205.20  Aligned_cols=161  Identities=15%  Similarity=0.083  Sum_probs=129.7

Q ss_pred             CCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhh---hccCCCCCcEEEEecCh-HHHHHHHHHHHHHHhCCeEEE
Q psy6874         280 PPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS---DAVHIEPNDVFLGYLPL-AHVFELLSESVCLLCGVAIGY  355 (504)
Q Consensus       280 ~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~lPl-~h~~~~~~~~~~l~~G~~v~~  355 (504)
                      ...++++++++|||||||.||||+++|.++......+.   ..+++.++|++++.+|+ +|..++...+.++..|+++++
T Consensus        86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  165 (437)
T 2y27_A           86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP  165 (437)
T ss_dssp             SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred             cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence            34668999999999999999999999999887665443   34678899999999999 788887777889999999987


Q ss_pred             cCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhH
Q psy6874         356 STPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDK  435 (504)
Q Consensus       356 ~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~  435 (504)
                      .+.......        ++.+++++||+++++|+++..+.+...+....                               
T Consensus       166 ~~~~~~~~~--------~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~-------------------------------  206 (437)
T 2y27_A          166 FGGGQTEKQ--------VQLIQDFRPDIIMVTPSYMLSIADEIERQGLD-------------------------------  206 (437)
T ss_dssp             CCSCCHHHH--------HHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC-------------------------------
T ss_pred             CCCCCHHHH--------HHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC-------------------------------
Confidence            765432221        33588999999999999999998754321100                               


Q ss_pred             HhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccc
Q psy6874         436 VVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSC  487 (504)
Q Consensus       436 ~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~  487 (504)
                              ...+++|.+++||+++++++.++++..+|++++++||+||+++.
T Consensus       207 --------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~  250 (437)
T 2y27_A          207 --------PVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGP  250 (437)
T ss_dssp             --------GGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEE
T ss_pred             --------cccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCC
Confidence                    00158999999999999999999998889999999999998543

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.87  E-value=2.5e-22  Score=201.69  Aligned_cols=167  Identities=17%  Similarity=0.172  Sum_probs=125.0

Q ss_pred             CCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhh---hccCCCCCcEEEEecCh-HHHHHHHHHHHHHHhCCeEEEc
Q psy6874         281 PTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFS---DAVHIEPNDVFLGYLPL-AHVFELLSESVCLLCGVAIGYS  356 (504)
Q Consensus       281 ~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~lPl-~h~~~~~~~~~~l~~G~~v~~~  356 (504)
                      ..++++++|+|||||||.||+|+++|.++........   ...++.++|++++++|+ +|+.++...+.++..|+ +++.
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~  166 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS  166 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence            4678999999999999999999999999998887543   45578899999999999 99999988777789999 5554


Q ss_pred             Cccccc------cc---------hhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Q psy6874         357 TPLTMI------DT---------SSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKR  421 (504)
Q Consensus       357 ~~~~~~------~~---------~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~  421 (504)
                      ......      ..         ...+....++.+++++||++.++|+++..+.+....                     
T Consensus       167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~---------------------  225 (369)
T 3hgu_A          167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEV---------------------  225 (369)
T ss_dssp             CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHH---------------------
T ss_pred             ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhh---------------------
Confidence            321111      00         000000112357899999999999999998764110                     


Q ss_pred             HHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHH-HHh-CCceeeecccccccccee
Q psy6874         422 KWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIK-VCL-CEKVIQGYGLTETTSCAT  489 (504)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~-~~~-~~~v~~~YG~TEt~~~~~  489 (504)
                                          .....+++|.+++||+++++++.+.++ +.| ++++++.||+||+++.+.
T Consensus       226 --------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~  275 (369)
T 3hgu_A          226 --------------------VLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSR  275 (369)
T ss_dssp             --------------------HHHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEE
T ss_pred             --------------------hccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhccee
Confidence                                001114899999999999999999999 888 899999999999876553

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.87  E-value=6.9e-22  Score=203.50  Aligned_cols=177  Identities=11%  Similarity=0.058  Sum_probs=135.9

Q ss_pred             eeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhh---ccCCCCCcEEEEecCh-
Q psy6874         259 IVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD---AVHIEPNDVFLGYLPL-  334 (504)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lPl-  334 (504)
                      +.+.+++.+...     .......++++++++|||||||.||||+++|.++.........   .+++.++|++++.+|+ 
T Consensus        72 ~~~~~~l~~~~p-----~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~  146 (443)
T 2y4o_A           72 FSTKNDLRDNYP-----FGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYG  146 (443)
T ss_dssp             CBCHHHHHTTTT-----TTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCS
T ss_pred             CCcHHHHHhhCC-----CcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCc
Confidence            455666654321     1122346689999999999999999999999998876554433   5688999999999999 


Q ss_pred             HHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccChHHHHHHH
Q psy6874         335 AHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFA  414 (504)
Q Consensus       335 ~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~  414 (504)
                      .|..++...+.++..|+++++.+.......        ++.+++++||++.++|+++..+.+...+....          
T Consensus       147 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~--------~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~----------  208 (443)
T 2y4o_A          147 LFTGGLGIHYGAERLGCMVVPMSGGQTEKQ--------VQLIRDFEPKIILVTPSYMLNLIDEMVRQGMD----------  208 (443)
T ss_dssp             SSHHHHHHHHHHHHHTCEEECCCSCCHHHH--------HHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC----------
T ss_pred             ccccHHHHHHHHHHcCCEEEECCCCCHHHH--------HHHHHHhCCcEEEECHHHHHHHHHHHHHcCCC----------
Confidence            577777777889999999988765432222        33588999999999999999987753321100          


Q ss_pred             HHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccccccc
Q psy6874         415 FAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTSC  487 (504)
Q Consensus       415 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~~  487 (504)
                                                   ...+++|.+++||+++++++.+++++.+|++++++||+||+++.
T Consensus       209 -----------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~  252 (443)
T 2y4o_A          209 -----------------------------PAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGP  252 (443)
T ss_dssp             -----------------------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEE
T ss_pred             -----------------------------cccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCC
Confidence                                         00158999999999999999999998899999999999998543

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=92.68  E-value=1.1  Score=44.66  Aligned_cols=107  Identities=10%  Similarity=0.094  Sum_probs=81.1

Q ss_pred             ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCC--HHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccE
Q psy6874         137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETR--AEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNI  214 (504)
Q Consensus       137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~--~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~  214 (504)
                      ...+|.+.+...+..+++.+...|+.++|++..+.+-.  ...+...++++..|+.++++.. ..++.+...+++.++++
T Consensus       107 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~  185 (437)
T 2y27_A          107 VVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDI  185 (437)
T ss_dssp             EEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSE
T ss_pred             EEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCE
Confidence            35789999988888888888788999999999888853  3344557788899999887665 47899999999999999


Q ss_pred             EEEcCCchhHHHHHhh------cCCCceEEEEEcCC
Q psy6874         215 VITTHDLLPKFRNILK------LTPRVSTLIYMEDQ  244 (504)
Q Consensus       215 vi~~~~~~~~~~~~~~------~~~~l~~ii~~~~~  244 (504)
                      ++..+..+..+.+...      ..+.++.+++-.+.
T Consensus       186 l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~  221 (437)
T 2y27_A          186 IMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEP  221 (437)
T ss_dssp             EEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred             EEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCcc
Confidence            9988876655544321      12567777766543

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=92.52  E-value=1.1  Score=44.84  Aligned_cols=107  Identities=8%  Similarity=-0.026  Sum_probs=82.2

Q ss_pred             ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC--CHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccE
Q psy6874         137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAET--RAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNI  214 (504)
Q Consensus       137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n--~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~  214 (504)
                      ...+|.+.+...+..+++.+...|+.++|++..+.+-  ....+..+++++..|+.+++.+. ..++.+...+++.++++
T Consensus       103 ~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~  181 (436)
T 3qov_A          103 VIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTA  181 (436)
T ss_dssp             EEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCE
T ss_pred             EEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCE
Confidence            4678999999999889888888899999999998874  34445567888899999887765 46789999999999999


Q ss_pred             EEEcCCchhHHHHHhh------cCCCceEEEEEcCC
Q psy6874         215 VITTHDLLPKFRNILK------LTPRVSTLIYMEDQ  244 (504)
Q Consensus       215 vi~~~~~~~~~~~~~~------~~~~l~~ii~~~~~  244 (504)
                      ++..+..+..+.+...      ..+.++.+++-.+.
T Consensus       182 ~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~  217 (436)
T 3qov_A          182 LHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP  217 (436)
T ss_dssp             EECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred             EEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence            9988876655544321      14567777776554

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=91.89  E-value=1.3  Score=44.26  Aligned_cols=107  Identities=11%  Similarity=0.069  Sum_probs=81.0

Q ss_pred             ceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCC--HHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccE
Q psy6874         137 YEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETR--AEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNI  214 (504)
Q Consensus       137 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~~~n~--~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~  214 (504)
                      ...+|.+.+...+..+++.+...|+.++|++..+++-+  ...+...++++..|+.++++... .++.+...+++.++++
T Consensus       109 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~  187 (443)
T 2y4o_A          109 VVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKI  187 (443)
T ss_dssp             EEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSE
T ss_pred             EEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcE
Confidence            35689999988888888888788999999999888853  34445677888899998877654 7899999999999999


Q ss_pred             EEEcCCchhHHHHHhh------cCCCceEEEEEcCC
Q psy6874         215 VITTHDLLPKFRNILK------LTPRVSTLIYMEDQ  244 (504)
Q Consensus       215 vi~~~~~~~~~~~~~~------~~~~l~~ii~~~~~  244 (504)
                      ++..+..+..+.+...      ..+.++.+++-.+.
T Consensus       188 l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~  223 (443)
T 2y4o_A          188 ILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEP  223 (443)
T ss_dssp             EEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred             EEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCc
Confidence            9988776655543321      12567777766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	504
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	7e-36
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	8e-28
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	3e-27
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	2e-21
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	1e-18
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	6e-17
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	7e-15

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  139 bits (350), Expect = 7e-36
 Identities = 62/376 (16%), Positives = 123/376 (32%), Gaps = 60/376 (15%)

Query: 128 IFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQ 187
           I++       +  S+ +++ +   F   L  LG +    V I+     E  +A  AC + 
Sbjct: 92  IWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARI 151

Query: 188 NIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLT--------PRVSTLI 239
                 I+     EA+A  I ++   +VIT  + +   R+I            P V+++ 
Sbjct: 152 GAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVE 211

Query: 240 YMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTP 299
           ++     +    ++++G ++     I K   E    ++      +D   I+YTSGSTG P
Sbjct: 212 HVIVLKRTGSDIDWQEGRDLWWRDLIEKASPE----HQPEAMNAEDPLFILYTSGSTGKP 267

Query: 300 KGVVLTHDNMI-STLKAFSDAVHIEPNDVFLGYLPLAHVFELLSE-SVCLLCGVAIGYST 357
           KGV+ T    +      F       P D++     +  V          L CG       
Sbjct: 268 KGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFE 327

Query: 358 PLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAF 417
            +    T +++ +             L   P  +  +     + +               
Sbjct: 328 GVPNWPTPARMCQ----VVDKHQVNILYTAPTAIRALMAEGDKAIEGTDR---------- 373

Query: 418 EYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEK--- 474
                                          +R++ S G P++P+  E     + ++   
Sbjct: 374 -----------------------------SSLRILGSVGEPINPEAWEWYWKKIGKEKCP 404

Query: 475 VIQGYGLTETTSCATV 490
           V+  +  TET      
Sbjct: 405 VVDTWWQTETGGFMIT 420

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  114 bits (285), Expect = 8e-28
 Identities = 66/384 (17%), Positives = 109/384 (28%), Gaps = 67/384 (17%)

Query: 114 QILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAET 173
             L           +  +   G+    ++ +V   A     GLR+LG      V      
Sbjct: 15  DFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFN 74

Query: 174 RAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTP 233
               + A  A       + T    L  + IA+ +N  E  +++   +LLP    I     
Sbjct: 75  HFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK 134

Query: 234 RVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTS 293
            V   + M+++         +   E                         +    + YT+
Sbjct: 135 TVQHFVVMDEKAPEGYLAYEEALGEEADP----------------VRVPERAACGMAYTT 178

Query: 294 GSTGTPKGVVLTHDNMISTLKAFSDAVH--IEPNDVFLGYLPLAHVFELLSESVCLLCGV 351
           G+TG PKGVV +H  ++    A S      +   DV L  +P+ HV          L G 
Sbjct: 179 GTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGA 238

Query: 352 AIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRA 411
                 P     +  ++  G          T    VP                      A
Sbjct: 239 KQVLPGPRLDPASLVELFDGEG-------VTFTAGVP------------------TVWLA 273

Query: 412 LFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCL 471
           L  +      +                          +R ++ GG+          +   
Sbjct: 274 LADYLESTGHRLK-----------------------TLRRLVVGGSAAPRSLIARFERMG 310

Query: 472 CEKVIQGYGLTETTSCATVMHLND 495
            E V QGYGLTET+       +  
Sbjct: 311 VE-VRQGYGLTETSPVVVQNFVKS 333

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  113 bits (283), Expect = 3e-27
 Identities = 61/387 (15%), Positives = 111/387 (28%), Gaps = 54/387 (13%)

Query: 121 EKQPNGR--IFKKYVMGDYEWRSFNQVNDEAEAFGKGLR-SLGQEPRHNVVIFAETRAEW 177
            K PN +  IF+    G     ++ ++ +E     + L  S+G      V ++     E 
Sbjct: 70  LKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA 129

Query: 178 MIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNI---LKLTPR 234
           +I   A  +       ++A     ++   IN+ +  +VITT +     + I     +   
Sbjct: 130 IITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDA 189

Query: 235 VSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSG 294
           +     +   L    T N                  +  + Y  +P   +D   ++YTSG
Sbjct: 190 LRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSG 249

Query: 295 STGTPKGVVLTHDNMI-STLKAFSDAVHIEPNDVFLGYLPLAHVFELLSE-SVCLLCGVA 352
           STG PKGV  +    +   L            DVF     +  +          LL G A
Sbjct: 250 STGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCA 309

Query: 353 IGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRASPFKRAL 412
                        S+              T     P  L  + +     +   S      
Sbjct: 310 TLVFEGTPAYPNYSRYWD----IIDEHKVTQFYVAPTALRLLKRAGDSYIENHSL----- 360

Query: 413 FAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLC 472
                                               +R + S G P++ +  E     + 
Sbjct: 361 ----------------------------------KSLRCLGSVGEPIAAEVWEWYSEKIG 386

Query: 473 EK---VIQGYGLTETTSCATVMHLNDM 496
           +    ++  Y  TE+ S         +
Sbjct: 387 KNEIPIVDTYWQTESGSHLVTPLAGGV 413

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score = 95.0 bits (235), Expect = 2e-21
 Identities = 63/356 (17%), Positives = 107/356 (30%), Gaps = 52/356 (14%)

Query: 141 SFNQVNDEAEAFGKGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGE 200
           ++ +  + +    + ++  G    H +V+ +E   ++ +         + V        E
Sbjct: 49  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 108

Query: 201 EAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIV 260
             + + +N ++  +V  +   L K  N+ K  P +  +I M+ +   TD   F+     V
Sbjct: 109 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK---TDYQGFQSMYTFV 165

Query: 261 PFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV 320
                +  G         S    K  A+IM +SGSTG PKGV L H           D +
Sbjct: 166 --TSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI 223

Query: 321 HIEPNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLH 380
                      L +            L   +       +   +                 
Sbjct: 224 FGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFE----------------- 266

Query: 381 PTALTAVPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQ 440
                   L L  +     +                   K   +                
Sbjct: 267 ------EELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLS---------------- 304

Query: 441 TKKLLGGRVRLILSGGAPLSPDTHE-LIKVCLCEKVIQGYGLTETTSCATVMHLND 495
                   +  I SGGAPLS +  E + K      + QGYGLTETTS   +    D
Sbjct: 305 -------NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD 353

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 86.5 bits (213), Expect = 1e-18
 Identities = 45/260 (17%), Positives = 93/260 (35%), Gaps = 33/260 (12%)

Query: 104 FSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEP 163
           +   + +   Q+  E+  K+PN  +    V  + +  +++++N +A    +     G   
Sbjct: 19  YPRDKTIH--QLFEEQVSKRPN-NVA--IVCENEQL-TYHELNVKANQLARIFIEKGIGK 72

Query: 164 RHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLP 223
              V I  E   +  I   A  K     V I     +E I + +++++  +++T   L+ 
Sbjct: 73  DTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVH 132

Query: 224 KFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTP 283
              NI                   T+                              P   
Sbjct: 133 LIHNIQFNGQVEIFEEDTIKIREGTNLH---------------------------VPSKS 165

Query: 284 KDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVFLGYLPLAHVFELLSE 343
            D A ++YTSG+TG PKG +L H  + +    F +++++   D    +  ++    +   
Sbjct: 166 TDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEM 225

Query: 344 SVCLLCGVAIGYSTPLTMID 363
            + LL G ++      T+ D
Sbjct: 226 FMALLTGASLYIILKDTIND 245

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 81.2 bits (199), Expect = 6e-17
 Identities = 57/394 (14%), Positives = 107/394 (27%), Gaps = 73/394 (18%)

Query: 108 RCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNV 167
           + +   ++L     + P+               +  ++    EA    L + G  P+  V
Sbjct: 2   QTVN--EMLRRAATRAPD-HCALAVPARGLRL-THAELRARVEAVAARLHADGLRPQQRV 57

Query: 168 VIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRN 227
            + A   A+ +IA  A  +       +   L    +A  I   E+   +    +  +  +
Sbjct: 58  AVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVI--AVGRQVAD 115

Query: 228 ILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTA 287
            +  +   + +I++ D +   +  ++   IE                        P   A
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDP-------------------QREPAQPA 156

Query: 288 IIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV--HIEPNDVFLGYLPLAHVFELLSESV 345
            I YTSG+TG PK  ++      S +   S  V      ++V LG +PL HV    +  V
Sbjct: 157 FIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLV 216

Query: 346 CLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRA 405
             L                                                         
Sbjct: 217 AALALDGTYVVVEEFRPV------------------------------------------ 234

Query: 406 SPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHE 465
                AL     E              +          L    +R +   GA +     E
Sbjct: 235 ----DALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLE 290

Query: 466 LIKVCLCEKVIQGYGLTETTSCATVMHLNDMGNI 499
            +   L  + +  YG TE  +   +        +
Sbjct: 291 TVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEM 324

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 74.6 bits (182), Expect = 7e-15
 Identities = 42/235 (17%), Positives = 78/235 (33%), Gaps = 19/235 (8%)

Query: 94  EKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFG 153
           E    Y           G   +L +   K  + RI      G+  W S+ +++  A+   
Sbjct: 11  ELAETYRKNGCWAGETFG--DLLRDRAAKYGD-RIA--ITCGNTHW-SYRELDTRADRLA 64

Query: 154 KGLRSLGQEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVN 213
            G + LG + +  VV+      E+     A F+     V    +     I +     E  
Sbjct: 65  AGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAA 124

Query: 214 IVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESG 273
             I   D    F          S L  +++ + + +   F    ++              
Sbjct: 125 AYI-IPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHT------------ 171

Query: 274 SRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPNDVF 328
              +       D A +  + GSTG  K +  THD+ I +LK   +   ++ + V+
Sbjct: 172 EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVY 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	504
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=2.2e-44  Score=385.41  Aligned_cols=354  Identities=18%  Similarity=0.200  Sum_probs=266.2

Q ss_pred             ccccccCCCCcH-HHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCC
Q psy6874          82 HIRLIRDGVDTM-EKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLG  160 (504)
Q Consensus        82 ~~~~~~~~~~tl-~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~G  160 (504)
                      ..+|+..+..|+ ..+++++++.+||++|+++..                 ...++.+++||+||.++++++|++|+++|
T Consensus        62 ~~~wf~~~~~N~~~n~ldrh~~~~~d~~Ali~~~-----------------~~~~~~~~~TY~eL~~~v~~~A~~L~~~G  124 (643)
T d1pg4a_          62 SIKWYEDGTLNLAANCLDRHLQENGDRTAIIWEG-----------------DDTSQSKHISYRELHRDVCRFANTLLDLG  124 (643)
T ss_dssp             EEEESTTCEECHHHHHTGGGHHHHTTSEEEEEEC-----------------SSTTCEEEEEHHHHHHHHHHHHHHHHHHT
T ss_pred             CCeeCCCChhhHHHHHHHHHHHhCCCCEEEEEEe-----------------cCCCCceEEeHHHHHHHHHHHHHHHHHcC
Confidence            345634445555 557778888899999997531                 12245578999999999999999999999


Q ss_pred             CCCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCch---------hHHHHHhh-
Q psy6874         161 QEPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLL---------PKFRNILK-  230 (504)
Q Consensus       161 v~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~-  230 (504)
                      +++||+|+++++|+++++++++||+++|++++|+++.++++++.+++++++++++|++++..         ..+..... 
T Consensus       125 v~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~  204 (643)
T d1pg4a_         125 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKN  204 (643)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTS
T ss_pred             CCCCCEEEEecccchHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999986522         22333322 


Q ss_pred             -cCCCceEEEEEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHH
Q psy6874         231 -LTPRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNM  309 (504)
Q Consensus       231 -~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l  309 (504)
                       ..+.+++++.........+..    ......+.+.......   ...+....++|+++|+|||||||.||||+++|+++
T Consensus       205 ~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~  277 (643)
T d1pg4a_         205 PNVTSVEHVIVLKRTGSDIDWQ----EGRDLWWRDLIEKASP---EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGY  277 (643)
T ss_dssp             TTCCSCCEEEEECSSCCCCCCC----BTTEEEHHHHHTTSCS---CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHH
T ss_pred             cccccceEEEEeccCCcccccc----cccchhhhhhhcccCc---ccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHH
Confidence             345677788776542111111    1123344444433322   33445567899999999999999999999999997


Q ss_pred             HHHHHh-hhhccCCCCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccc-cchhhhccCCcccccccCCcEEEe
Q psy6874         310 ISTLKA-FSDAVHIEPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMI-DTSSKIKRGTKGDASVLHPTALTA  386 (504)
Q Consensus       310 ~~~~~~-~~~~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~-~~~~~i~~~~~~~i~~~~~T~~~~  386 (504)
                      +..... ....+++.++|++++++|++|++++.. ++.+|+.|+++++.+..... +....     ++.++++++|++.+
T Consensus       278 l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~-----~~~i~~~~vt~~~~  352 (643)
T d1pg4a_         278 LVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARM-----CQVVDKHQVNILYT  352 (643)
T ss_dssp             HHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHH-----HHHHHHHTCSEEEE
T ss_pred             HHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHH-----HHHHHHHCCcEEEe
Confidence            655444 445668999999999999999999875 66889999999987643322 22111     33588999999999


Q ss_pred             ccHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHH
Q psy6874         387 VPLILDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHEL  466 (504)
Q Consensus       387 vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~  466 (504)
                      +|+++..+.+......                                       .....++||.+++||+|++++++++
T Consensus       353 ~P~~l~~l~~~~~~~~---------------------------------------~~~dl~sLr~i~~~G~pl~~~~~~~  393 (643)
T d1pg4a_         353 APTAIRALMAEGDKAI---------------------------------------EGTDRSSLRILGSVGEPINPEAWEW  393 (643)
T ss_dssp             CHHHHHHHHTTGGGGT---------------------------------------TTCCCTTCCEEEEESSCCCHHHHHH
T ss_pred             hHHHHHHHHhCcchhc---------------------------------------cccCCCceEEEEEEeCCCCHHHHHH
Confidence            9999999876321111                                       1112378999999999999999999


Q ss_pred             HHHHhC---CceeeeccccccccceeecccCC-CCCccCCC
Q psy6874         467 IKVCLC---EKVIQGYGLTETTSCATVMHLND-MGNINSNG  503 (504)
Q Consensus       467 ~~~~~~---~~v~~~YG~TEt~~~~~~~~~~d-~~~~~s~G  503 (504)
                      +.+.++   ++++++||+||+++.++...+.+ ..+.+++|
T Consensus       394 ~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G  434 (643)
T d1pg4a_         394 YWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSAT  434 (643)
T ss_dssp             HHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCB
T ss_pred             HHHHhCCCCceEEEeechhhccceEEecCCCccCCCCCccc
Confidence            998884   78999999999987666554433 23456666

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-42  Score=371.62  Aligned_cols=354  Identities=16%  Similarity=0.139  Sum_probs=262.0

Q ss_pred             ccccCCCCcH-HHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHH-hCCC
Q psy6874          84 RLIRDGVDTM-EKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLR-SLGQ  161 (504)
Q Consensus        84 ~~~~~~~~tl-~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~Gv  161 (504)
                      +|+..+.-|+ ..+++++++++||++|+++..                 .+.++.+++||+||.++++++|++|+ ++|+
T Consensus        51 ~wf~~~~lN~~~n~ldr~a~~~pd~~Ali~~~-----------------~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv  113 (640)
T d1ry2a_          51 AWFLNGQLNACYNCVDRHALKTPNKKAIIFEG-----------------DEPGQGYSITYKELLEEVCQVAQVLTYSMGV  113 (640)
T ss_dssp             CBSTTCEECHHHHHTHHHHTTCTTSEEEEEEC-----------------SSTTCCEEEEHHHHHHHHHHHHHHHHHTSCC
T ss_pred             cCCCCCchhHHHHHHHHHHhhCCCCEEEEEEe-----------------cCCCCeeEEeHHHHHHHHHHHHHHHHHhcCC
Confidence            4523334444 788899999999999997532                 12355688999999999999999997 6899


Q ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCc---------hhHHHHHhhcC
Q psy6874         162 EPRHNVVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDL---------LPKFRNILKLT  232 (504)
Q Consensus       162 ~~gd~Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~  232 (504)
                      ++||+|+|+++|++|++++++||+++|++++|+++.++++++.++++++++++++++...         ...+.......
T Consensus       114 ~~Gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (640)
T d1ry2a_         114 RKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRET  193 (640)
T ss_dssp             CTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSC
T ss_pred             CCCCEEEEEeCCCHHHHHHHHHhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhh
Confidence            999999999999999999999999999999999999999999999999999999998653         23344444555


Q ss_pred             CCceEEEEEcCCCCcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHH
Q psy6874         233 PRVSTLIYMEDQLTSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMIST  312 (504)
Q Consensus       233 ~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~  312 (504)
                      +.++..............   ........+.........   .....+..++|+++|+|||||||.||||+++|.+++.+
T Consensus       194 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~  267 (640)
T d1ry2a_         194 PGVRHVLVYRKTNNPSVA---FHAPRDLDWATEKKKYKT---YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLG  267 (640)
T ss_dssp             TTCCEEEEECSSCCSSCC---CCSSSEEEHHHHHTTSCS---CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHH
T ss_pred             cccceeeeeccccccccc---cccccccccccccccccc---ccccCCcccccCCEEEECCCCCCCCcceeeccccHHHH
Confidence            566655555432111100   011122223222222211   34445567789999999999999999999999998776


Q ss_pred             HHhhh-hccCCCCCcEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHH
Q psy6874         313 LKAFS-DAVHIEPNDVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLI  390 (504)
Q Consensus       313 ~~~~~-~~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~  390 (504)
                      ..... ..+.+.++|++++++|++|++++.. ++.+|+.|+++++.+..........+    ++.++++++|++.++|++
T Consensus       268 ~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~----~~~i~~~~vt~~~~~P~~  343 (640)
T d1ry2a_         268 ALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRY----WDIIDEHKVTQFYVAPTA  343 (640)
T ss_dssp             HHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHH----HHHHHHTTCSEEEECHHH
T ss_pred             HHHHHHhhcCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHH----HHHHHHhCccEEEcChHH
Confidence            65544 3568899999999999999999874 67889999999887654332221111    345899999999999999


Q ss_pred             HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHH
Q psy6874         391 LDRIYKGVHEKVSRASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVC  470 (504)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~  470 (504)
                      +..+.+......                                       .....++||.+++||+|+++++.+++++.
T Consensus       344 ~~~l~~~~~~~~---------------------------------------~~~~l~sLr~v~~gG~~l~~~~~~~~~~~  384 (640)
T d1ry2a_         344 LRLLKRAGDSYI---------------------------------------ENHSLKSLRCLGSVGEPIAAEVWEWYSEK  384 (640)
T ss_dssp             HHHHTTSCTTSS---------------------------------------SSCCCTTCCEEEECSSCCCHHHHHHHHHT
T ss_pred             HHHHHhcccccc---------------------------------------ccCCCCceEEEEEecccCcHHHHHHHHHh
Confidence            988754211100                                       11123789999999999999999999998


Q ss_pred             hC---CceeeeccccccccceeecccCC--CCCccCCC
Q psy6874         471 LC---EKVIQGYGLTETTSCATVMHLND--MGNINSNG  503 (504)
Q Consensus       471 ~~---~~v~~~YG~TEt~~~~~~~~~~d--~~~~~s~G  503 (504)
                      +|   ++++++||+||++.........+  ....+++|
T Consensus       385 ~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G  422 (640)
T d1ry2a_         385 IGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSAS  422 (640)
T ss_dssp             TSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCC
T ss_pred             cCCCcceEEeeecccccccccccccCCCcCCCCCcccc
Confidence            85   56999999999987666554333  23455665

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.7e-41  Score=354.43  Aligned_cols=322  Identities=20%  Similarity=0.206  Sum_probs=261.2

Q ss_pred             cCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy6874          87 RDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHN  166 (504)
Q Consensus        87 ~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~  166 (504)
                      .+...||+++|+++++++||++|+.+.+                   .|+.+++||+||.++++++|++|.++|+++||+
T Consensus         7 ~~~~~~l~~~l~~~a~~~pd~~av~~~~-------------------~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~   67 (534)
T d1v25a_           7 MDEELNLWDFLERAAALFGRKEVVSRLH-------------------TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDR   67 (534)
T ss_dssp             CCCCCCTHHHHHHHHHHSTTCEEEEECT-------------------TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred             CCCCCCHHHHHHHHHHHcCCCeEEEEec-------------------CCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCE
Confidence            3445589999999999999999997542                   245578999999999999999999999999999


Q ss_pred             EEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCC
Q psy6874         167 VVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLT  246 (504)
Q Consensus       167 Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~  246 (504)
                      |+|+++|++||+++++||+++|++++|+++.++.+++.++|+.+++++++++.........+....+.++..+.......
T Consensus        68 V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (534)
T d1v25a_          68 VATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP  147 (534)
T ss_dssp             EEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCC
T ss_pred             EEEEeCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeecccc
Confidence            99999999999999999999999999999999999999999999999999999988888888888888887776654311


Q ss_pred             cccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhh--ccCCCC
Q psy6874         247 STDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSD--AVHIEP  324 (504)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~--~~~~~~  324 (504)
                      ..          .......    ...  ........++++++|+|||||||.||||+++|.+++........  ......
T Consensus       148 ~~----------~~~~~~~----~~~--~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~  211 (534)
T d1v25a_         148 EG----------YLAYEEA----LGE--EADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSE  211 (534)
T ss_dssp             TT----------CEEHHHH----CCS--CCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCT
T ss_pred             cc----------ccccccc----ccc--cccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhccccccc
Confidence            10          1111111    000  23334567789999999999999999999999999876644433  446788


Q ss_pred             CcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhc
Q psy6874         325 NDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSR  404 (504)
Q Consensus       325 ~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~  404 (504)
                      +|++++.+|++|.+++...+..+..|+++++..+.......       ...+.++++|++.++|.++..+.+.....   
T Consensus       212 ~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~-------~~~~~~~~vt~~~~~p~~~~~~~~~~~~~---  281 (534)
T d1v25a_         212 KDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASL-------VELFDGEGVTFTAGVPTVWLALADYLEST---  281 (534)
T ss_dssp             TCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHH-------HHHHHHTTCCEEEECHHHHHHHHHHHHHH---
T ss_pred             ccccccccchhhhccccccceeeeecceeeecccccccccc-------chhhhhccccccccCchhhhhhhhhhccc---
Confidence            99999999999999999888888888888876553222221       23478899999999999999887753221   


Q ss_pred             cChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccccc
Q psy6874         405 ASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTET  484 (504)
Q Consensus       405 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt  484 (504)
                                                            ....++||.+++||+++++++.++++. ++.+++++||+||+
T Consensus       282 --------------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~-~~~~i~~~yG~te~  322 (534)
T d1v25a_         282 --------------------------------------GHRLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQGYGLTET  322 (534)
T ss_dssp             --------------------------------------TCCCSSCCEEEECSSCCCHHHHHHHHH-TTCEEEEEEECGGG
T ss_pred             --------------------------------------cccccceeEEEEecCCCCHHHHHHHHH-hCCeeeeecccccc
Confidence                                                  122379999999999999999999985 58999999999999


Q ss_pred             ccceeecc
Q psy6874         485 TSCATVMH  492 (504)
Q Consensus       485 ~~~~~~~~  492 (504)
                      ++.++...
T Consensus       323 ~~~~~~~~  330 (534)
T d1v25a_         323 SPVVVQNF  330 (534)
T ss_dssp             SSEEEECC
T ss_pred             ccceeecc
Confidence            88776553

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=1.3e-40  Score=349.42  Aligned_cols=336  Identities=21%  Similarity=0.256  Sum_probs=259.9

Q ss_pred             CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Q psy6874          91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIF  170 (504)
Q Consensus        91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~  170 (504)
                      .|+.++|.+++++|+++|+.....                  ..+..+.+||+||.++++++|+.|+++|+++||+|+|+
T Consensus        17 ~t~~~~l~~~~~~~~~~P~~~a~~------------------d~~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~   78 (541)
T d1lcia_          17 GTAGEQLHKAMKRYALVPGTIAFT------------------DAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVC   78 (541)
T ss_dssp             SCHHHHHHHHHHHHHTSTTCEEEE------------------ETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred             CCHHHHHHHHHHhhCCCCCeEEEE------------------eCCCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEE
Confidence            489999999999986555442110                  11223579999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCcccc
Q psy6874         171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTDT  250 (504)
Q Consensus       171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~  250 (504)
                      ++|+++|+++++||+++|++++|+++.++.+++.++|+.++++++|++++..+++.++...++..+.++.++.....   
T Consensus        79 ~~ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  155 (541)
T d1lcia_          79 SENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY---  155 (541)
T ss_dssp             CSSCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB---
T ss_pred             eCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccc---
Confidence            99999999999999999999999999999999999999999999999999998888888899999999887654111   


Q ss_pred             cccCCCceeeehhHHHhccccc----CCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhcc---CCC
Q psy6874         251 TNFKQGIEIVPFKQIVKRGSES----GSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV---HIE  323 (504)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~---~~~  323 (504)
                            .....+.+........    ....+.....++++++|+|||||||.||||+++|++++..........   .+.
T Consensus       156 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~  229 (541)
T d1lcia_         156 ------QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQII  229 (541)
T ss_dssp             ------TTBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCC
T ss_pred             ------cccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhccccccc
Confidence                  1223333333322111    112233445678999999999999999999999999988766655433   678


Q ss_pred             CCcEEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHh
Q psy6874         324 PNDVFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVS  403 (504)
Q Consensus       324 ~~d~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~  403 (504)
                      ++|++++++|++|.++....+.++..|+..............        ..+..+++|.+.++|.++..+.+....   
T Consensus       230 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~t~~~~~p~~~~~~~~~~~~---  298 (541)
T d1lcia_         230 PDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFL--------RSLQDYKIQSALLVPTLFSFFAKSTLI---  298 (541)
T ss_dssp             TTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHH--------HHHHHTTCSEEECCHHHHHHHHHCSCG---
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhH--------HHHhhhhccccccCccccccccccccc---
Confidence            899999999999999999888888888888876555444332        247789999999999999888763111   


Q ss_pred             ccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCC-ceeeecccc
Q psy6874         404 RASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCE-KVIQGYGLT  482 (504)
Q Consensus       404 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~-~v~~~YG~T  482 (504)
                                                            .....+++|.+++||+++++++.+++...++. .++++||+|
T Consensus       299 --------------------------------------~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~T  340 (541)
T d1lcia_         299 --------------------------------------DKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLT  340 (541)
T ss_dssp             --------------------------------------GGSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCG
T ss_pred             --------------------------------------cccccccceEEEecccccccccccccccccCCceeeecCCcc
Confidence                                                  11123689999999999999999999988865 689999999


Q ss_pred             ccccceeecccCCCCCccCCC
Q psy6874         483 ETTSCATVMHLNDMGNINSNG  503 (504)
Q Consensus       483 Et~~~~~~~~~~d~~~~~s~G  503 (504)
                      |+++.++.....+ ...+++|
T Consensus       341 E~~~~~~~~~~~~-~~~~svG  360 (541)
T d1lcia_         341 ETTSAILITPEGD-DKPGAVG  360 (541)
T ss_dssp             GGSSCSEECCCC----CCCCB
T ss_pred             ccCceEEecCccc-CCCCccc
Confidence            9998888776554 4556676

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=1.8e-38  Score=330.94  Aligned_cols=305  Identities=20%  Similarity=0.226  Sum_probs=242.1

Q ss_pred             cCCCCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy6874          87 RDGVDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHN  166 (504)
Q Consensus        87 ~~~~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~  166 (504)
                      +|...||.++|+++++++||++|+++.                       .+.+||+||.++++++|++|+++|+++||+
T Consensus        19 ~~~~~tl~~l~~~~a~~~Pd~~Al~~~-----------------------~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~   75 (514)
T d1amua_          19 YPRDKTIHQLFEEQVSKRPNNVAIVCE-----------------------NEQLTYHELNVKANQLARIFIEKGIGKDTL   75 (514)
T ss_dssp             CCTTCCHHHHHHHHHHHCTTSEEEEET-----------------------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred             CCCCCcHHHHHHHHHHhCCCCeEEEEC-----------------------CeeEcHHHHHHHHHHHHHHHHHcCcCCcCE
Confidence            567779999999999999999999642                       267999999999999999999999999999


Q ss_pred             EEEEcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCC
Q psy6874         167 VVIFAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLT  246 (504)
Q Consensus       167 Vai~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~  246 (504)
                      |+++++|+++|+++++||+++|++++|++++++++++.++++.++++++|++.+..+.+...   .......+ ....  
T Consensus        76 Vai~~~n~~~~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~---~~~~~~~~-~~~~--  149 (514)
T d1amua_          76 VGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI---QFNGQVEI-FEED--  149 (514)
T ss_dssp             EEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTS---CCCSEEEE-CCCS--
T ss_pred             EEEEeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhh---cccccccc-cccc--
Confidence            99999999999999999999999999999999999999999999999999998765543221   11111111 1111  


Q ss_pred             cccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCCc
Q psy6874         247 STDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPND  326 (504)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d  326 (504)
                                         ......  ......+..++|+++|+|||||||.||+|+++|.++..........+....+|
T Consensus       150 -------------------~~~~~~--~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d  208 (514)
T d1amua_         150 -------------------TIKIRE--GTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKD  208 (514)
T ss_dssp             -------------------TTTTSC--CSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTC
T ss_pred             -------------------cccccc--cccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccc
Confidence                               000000  02333455778999999999999999999999999999999999999999999


Q ss_pred             EEEEecChHHHHHHHHHHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhccC
Q psy6874         327 VFLGYLPLAHVFELLSESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSRAS  406 (504)
Q Consensus       327 ~~l~~lPl~h~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~  406 (504)
                      ++++.+|++|.+++...+.++..|+++++..+....+.....     ..+....++.+..+|.......           
T Consensus       209 ~~l~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-----------  272 (514)
T d1amua_         209 RIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFE-----QYINQKEITVITLPPTYVVHLD-----------  272 (514)
T ss_dssp             EEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHH-----HHHHHTTCCEEEECHHHHTTSC-----------
T ss_pred             cccceeccccccccccccccccccccccccccccccchhhhh-----hhhhhhhcccccceeeeccccc-----------
Confidence            999999999999999989999999999988766555543332     2367788899888887533211           


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccccccc
Q psy6874         407 PFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTETTS  486 (504)
Q Consensus       407 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt~~  486 (504)
                                                          ...+.++|.+++||+++++++.+++..  +++++++||+||++.
T Consensus       273 ------------------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~  314 (514)
T d1amua_         273 ------------------------------------PERILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTI  314 (514)
T ss_dssp             ------------------------------------TTTCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSS
T ss_pred             ------------------------------------ccccccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCce
Confidence                                                011268999999999999999888765  789999999999988


Q ss_pred             ceeecccCC
Q psy6874         487 CATVMHLND  495 (504)
Q Consensus       487 ~~~~~~~~d  495 (504)
                      .++.....+
T Consensus       315 ~~~~~~~~~  323 (514)
T d1amua_         315 CATTWVATK  323 (514)
T ss_dssp             CSEEEECCS
T ss_pred             eeeeccccc
Confidence            777665443

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=6.3e-38  Score=328.19  Aligned_cols=312  Identities=20%  Similarity=0.246  Sum_probs=244.5

Q ss_pred             CcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Q psy6874          91 DTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVIF  170 (504)
Q Consensus        91 ~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai~  170 (504)
                      +|+.++|+++++++||++|+.+                      ++ +.+||+||.++++++|++|+++|+++||+|+++
T Consensus        25 ~tl~~~l~~~a~~~pd~~Al~~----------------------~~-~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~   81 (536)
T d1mdba_          25 ETFGDLLRDRAAKYGDRIAITC----------------------GN-THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQ   81 (536)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEE----------------------TT-EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEC
T ss_pred             CCHHHHHHHHHHHCCCCeEEEE----------------------CC-EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEE
Confidence            5899999999999999999963                      22 679999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchh-----HHHHHhhcCCCceEEEEEcCCC
Q psy6874         171 AETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLP-----KFRNILKLTPRVSTLIYMEDQL  245 (504)
Q Consensus       171 ~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~l~~ii~~~~~~  245 (504)
                      ++|+++|+++++||+++|++++|++++++.+++.++|++++++++++++....     .........+.+...+..... 
T Consensus        82 ~~n~~~~~v~~lA~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  160 (536)
T d1mdba_          82 LPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA-  160 (536)
T ss_dssp             CCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC-
T ss_pred             eCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeecc-
Confidence            99999999999999999999999999999999999999999999999864331     122222334444444433222 


Q ss_pred             CcccccccCCCceeeehhHHHhcccccCCCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhccCCCCC
Q psy6874         246 TSTDTTNFKQGIEIVPFKQIVKRGSESGSRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAVHIEPN  325 (504)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~  325 (504)
                                 .....++++.   .   .........++|+++|+|||||||.||||++||.++.+++......+.+.++
T Consensus       161 -----------~~~~~~~~~~---~---~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~  223 (536)
T d1mdba_         161 -----------EEFLPLEDLH---T---EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHS  223 (536)
T ss_dssp             -----------TTSEEGGGCC---C---CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTT
T ss_pred             -----------ccccchhhcc---c---CCcCCCccCccchHHhhhcccccccceecccccccccccccccccccccccc
Confidence                       0112222211   0   1233345678999999999999999999999999999999999888999999


Q ss_pred             cEEEEecChHHHHHHHH-HH-HHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHh
Q psy6874         326 DVFLGYLPLAHVFELLS-ES-VCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVS  403 (504)
Q Consensus       326 d~~l~~lPl~h~~~~~~-~~-~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~  403 (504)
                      |++++..|++|.+++.. .+ ..+..|++++..+.......        ...+++++++.+..+|..+..+........ 
T Consensus       224 d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  294 (536)
T d1mdba_         224 TVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDA--------FPLIEREKVTITALVPPLAMVWMDAASSRR-  294 (536)
T ss_dssp             CEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHH--------HHHHHHHTCSEEEECHHHHHHHHHHHHHCC-
T ss_pred             cccccccccccccceeeccccccccccccccccCCCCHHHH--------HHHHhhhccccccccchhhhhhhhhccccc-
Confidence            99999999999999873 34 44444566655443322221        224788999999999999988876432211 


Q ss_pred             ccChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeeccccc
Q psy6874         404 RASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTE  483 (504)
Q Consensus       404 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TE  483 (504)
                                                              ...+++|.+++||++++++..+++...++.....+||.+|
T Consensus       295 ----------------------------------------~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (536)
T d1mdba_         295 ----------------------------------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAE  334 (536)
T ss_dssp             ----------------------------------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTT
T ss_pred             ----------------------------------------cccCcceeEEEeccccccccccchhhccCceeeecccccc
Confidence                                                    1126899999999999999999999999999999999999


Q ss_pred             cccceeecc
Q psy6874         484 TTSCATVMH  492 (504)
Q Consensus       484 t~~~~~~~~  492 (504)
                      .+.......
T Consensus       335 ~~~~~~~~~  343 (536)
T d1mdba_         335 GLVNYTRLD  343 (536)
T ss_dssp             SCEEECCTT
T ss_pred             ccccccccc
Confidence            876554443

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=6.9e-37  Score=316.80  Aligned_cols=314  Identities=21%  Similarity=0.257  Sum_probs=246.7

Q ss_pred             CCcHHHHHHHHHHhCCCCcccceecchhcccccCCCCcceeeeecCCceEEeHHHHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6874          90 VDTMEKVLRYVVTRFSDQRCLGTRQILAEEDEKQPNGRIFKKYVMGDYEWRSFNQVNDEAEAFGKGLRSLGQEPRHNVVI  169 (504)
Q Consensus        90 ~~tl~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~Vai  169 (504)
                      ++|+.++|+++++++||++|+.+.+                     +.+++||+||.++++++|++|+++|+++||+|+|
T Consensus         1 ~~ti~~~l~~~a~~~pd~~al~~~~---------------------~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i   59 (503)
T d3cw9a1           1 MQTVNEMLRRAATRAPDHCALAVPA---------------------RGLRLTHAELRARVEAVAARLHADGLRPQQRVAV   59 (503)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEEGG---------------------GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEECC---------------------CCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEE
Confidence            4689999999999999999997532                     2267999999999999999999999999999999


Q ss_pred             EcCCCHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHhHhcccccEEEEcCCchhHHHHHhhcCCCceEEEEEcCCCCccc
Q psy6874         170 FAETRAEWMIAAQACFKQNIPVVTIYATLGEEAIAHGINETEVNIVITTHDLLPKFRNILKLTPRVSTLIYMEDQLTSTD  249 (504)
Q Consensus       170 ~~~n~~e~~~~~lA~~~~G~~~v~i~~~l~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~  249 (504)
                      +++|+++|+++++||+++|++++|+++.++++++.+++++++++++|++..... ........ ....++.++       
T Consensus        60 ~~~n~~~~~~~~lA~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~-~~~~~~~~-~~~~~i~~~-------  130 (503)
T d3cw9a1          60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV-ADAIFQSG-SGARIIFLG-------  130 (503)
T ss_dssp             ECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHH-HHHHHHTT-CCCEEEEHH-------
T ss_pred             EeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHH-HHHHhhhc-cccccccch-------
Confidence            999999999999999999999999999999999999999999999999876321 22222222 222333332       


Q ss_pred             ccccCCCceeeehhHHHhcccccC--CCCCCCCCCCCCEEEEEecCCCCCCcceEEecHHHHHHHHHhhhhcc--CCCCC
Q psy6874         250 TTNFKQGIEIVPFKQIVKRGSESG--SRYEGSPPTPKDTAIIMYTSGSTGTPKGVVLTHDNMISTLKAFSDAV--HIEPN  325 (504)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~  325 (504)
                                    ++........  .........++++++++|||||||.||+|+++|.++.+.+......+  .....
T Consensus       131 --------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~  196 (503)
T d3cw9a1         131 --------------DLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRH  196 (503)
T ss_dssp             --------------HHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTT
T ss_pred             --------------hhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhcccccccccccc
Confidence                          2221111110  02233455778999999999999999999999999999988877655  44567


Q ss_pred             cEEEEecChHHHHHHHH-HHHHHHhCCeEEEcCccccccchhhhccCCcccccccCCcEEEeccHHHHHHHHHHHHHHhc
Q psy6874         326 DVFLGYLPLAHVFELLS-ESVCLLCGVAIGYSTPLTMIDTSSKIKRGTKGDASVLHPTALTAVPLILDRIYKGVHEKVSR  404 (504)
Q Consensus       326 d~~l~~lPl~h~~~~~~-~~~~l~~G~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~  404 (504)
                      |+++..+|++|.++... .+.+...++.+++.........        ...+..++++.+..+|..+..+......... 
T Consensus       197 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-  267 (503)
T d3cw9a1         197 NVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDA--------LQLVQQEQVTSLFATPTHLDALAAAAAHAGS-  267 (503)
T ss_dssp             CEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSCCHHHH--------HHHHHHHTCCEEEECHHHHHHHHHHHHHTCT-
T ss_pred             ccccccCccccccccccccccccccccccccccccChHHh--------hhhhhhceeeccccccccccccccccccccc-
Confidence            99999999998888774 6677777777777665544433        2347889999999999998888664332211 


Q ss_pred             cChHHHHHHHHHHHHHHHHHhcCCCcchhhHHhHHHHHHhcCCcEEEEEEccCCCCHHHHHHHHHHhCCceeeecccccc
Q psy6874         405 ASPFKRALFAFAFEYKRKWAKRGFRCPLIDKVVFGQTKKLLGGRVRLILSGGAPLSPDTHELIKVCLCEKVIQGYGLTET  484 (504)
Q Consensus       405 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~YG~TEt  484 (504)
                                                            ....++||.+++||+++++++..+++..++..+.++||+||+
T Consensus       268 --------------------------------------~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~  309 (503)
T d3cw9a1         268 --------------------------------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEA  309 (503)
T ss_dssp             --------------------------------------TCCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTT
T ss_pred             --------------------------------------cccccceEEEEecccccccccccccccccccccccccccccc
Confidence                                                  112368999999999999999999999999999999999999


Q ss_pred             ccceeecccC
Q psy6874         485 TSCATVMHLN  494 (504)
Q Consensus       485 ~~~~~~~~~~  494 (504)
                      +..+......
T Consensus       310 ~~~~~~~~~~  319 (503)
T d3cw9a1         310 MNSLYMRQPK  319 (503)
T ss_dssp             EEEEEEESCS
T ss_pred             ceeeeecccc
Confidence            8766655433