Psyllid ID: psy6885

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
MTGNFAKSPPARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTKD
ccccccccccccccccccccccccEEEEEcccEEEccEEEEEEEcccccccccccccccEEEEcccccccHHHHHHHHcccccEEEEccccccccEEEEEcccccccccccEEEccccHHccHHHHHHHHccccccccccHHHHHHcccccccccccccccccccccccccccccccHHHHHHccccccccccccEEEEcccccccEEEEEEEEccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHcc
ccccHHHHHHHHHHcccccccEcEEEEEEccEEEEccEEEEEEccccHHHccHHHHcccEEEEcccccccHHHHHHHHcccccEEEEccccccccEccccccHHHccccccEEEcccHHHHHHHHHHHHHHHHHcEEEEEEEEEEccccccEccccccccccHHHcEcccccEEEcccHHHHHHHHcHHHcccEEEEEEEccccccEEEEEEEEEcccccHHHHHHHHHHHHHccccccEEEEcccccHHHHccccccEEEEHHHcEEEEccEEEEEEEEcccHHHHHHHHHHHHHHHHHH
mtgnfakspparfssdeddlkspstffsckwppvvngnkiavhserdpkdipwaksgAEYVVESTGVFTTIEKASAHLAGGAKKVIisapsadapmfvcgvnldaydpsfkvisnascttnclaplakvihDNFEIVEGLMTTVHAttatqktvdgpsgklwrdgrgaaqniiPAATGAAKAVGKvipalngkltgmafrvpvanvSVVDLTVRLGKDATYDEIKAKVKAAaegplagilgytedevvssdfigdthssifdaqagiplngKFVKLISWYdneygysnRVVDLIKYIQTKD
mtgnfakspparfssdeddlkspstffsckwppvvngnkiavhserdpkdipwaKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHattatqktvdgpsgkLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIfdaqagiplNGKFVKLISWYdneygysnrvVDLIKYIQTKD
MTGNFAKSPPARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMttvhattatqktvDGPSGKLWRDGRGAAQNIIPaatgaakavgkvIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTKD
************************TFFSCKWPPVVNGNKIAVHSER*PKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYI****
*****AKSPPARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQT**
**********************PSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTKD
*TGNFAKSPPARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTKD
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MTGNFAKSPPARFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADAPMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTKD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query301 2.2.26 [Sep-21-2011]
O44104332 Glyceraldehyde-3-phosphat yes N/A 0.890 0.807 0.861 1e-134
P07486332 Glyceraldehyde-3-phosphat yes N/A 0.890 0.807 0.861 1e-134
Q4U3L0333 Glyceraldehyde-3-phosphat N/A N/A 0.890 0.804 0.847 1e-133
P07487332 Glyceraldehyde-3-phosphat yes N/A 0.890 0.807 0.854 1e-133
Q01597332 Glyceraldehyde-3-phosphat N/A N/A 0.890 0.807 0.839 1e-130
O44105304 Glyceraldehyde-3-phosphat N/A N/A 0.830 0.822 0.868 1e-124
Q05025333 Glyceraldehyde-3-phosphat N/A N/A 0.890 0.804 0.791 1e-121
O57479333 Glyceraldehyde-3-phosphat N/A N/A 0.890 0.804 0.791 1e-121
P00356333 Glyceraldehyde-3-phosphat yes N/A 0.890 0.804 0.787 1e-120
P56649333 Glyceraldehyde-3-phosphat N/A N/A 0.890 0.804 0.768 1e-120
>sp|O44104|G3P2_DROPS Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2 Back     alignment and function desciption
 Score =  477 bits (1227), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/268 (86%), Positives = 248/268 (92%)

Query: 34  VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
           VVNG KI V SERDP +I WA +GAEYVVESTGVFTTIEKAS HL GGAKKV+ISAPSAD
Sbjct: 65  VVNGQKITVFSERDPANINWASAGAEYVVESTGVFTTIEKASTHLKGGAKKVVISAPSAD 124

Query: 94  APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKT 153
           APMFVCGVNLDAY P  KV+SNASCTTNCLAPLAKVI+DNFEIVEGLMTTVHATTATQKT
Sbjct: 125 APMFVCGVNLDAYKPDMKVVSNASCTTNCLAPLAKVINDNFEIVEGLMTTVHATTATQKT 184

Query: 154 VDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTV 213
           VDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVP  NVSVVDLTV
Sbjct: 185 VDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTV 244

Query: 214 RLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKF 273
           RLGK A+YDEIKAKV+ AA GPL GILGYT++EVVS+DF+ DTHSS+FDA+AGI LN KF
Sbjct: 245 RLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKF 304

Query: 274 VKLISWYDNEYGYSNRVVDLIKYIQTKD 301
           VKLISWYDNE+GYSNRV+DLIKY+Q+KD
Sbjct: 305 VKLISWYDNEFGYSNRVIDLIKYMQSKD 332

Drosophila pseudoobscura pseudoobscura (taxid: 46245)
EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 2
>sp|P07486|G3P1_DROME Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2 Back     alignment and function description
>sp|Q4U3L0|G3P_GLOMM Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1 Back     alignment and function description
>sp|P07487|G3P2_DROME Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2 Back     alignment and function description
>sp|Q01597|G3P_DROHY Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1 Back     alignment and function description
>sp|O44105|G3P2_DROSU Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragment) OS=Drosophila subobscura GN=Gapdh2 PE=2 SV=1 Back     alignment and function description
>sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2 Back     alignment and function description
>sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenase OS=Columba livia GN=GAPDH PE=2 SV=3 Back     alignment and function description
>sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3 Back     alignment and function description
>sp|P56649|G3P_PANVR Glyceraldehyde-3-phosphate dehydrogenase OS=Panulirus versicolor PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query301
46561740332 glyceraldehyde 3-phosphate dehydrogenase 0.890 0.807 0.921 1e-140
53830712333 putative glyceraldehyde-3-phosphate dehy 0.890 0.804 0.917 1e-140
312306044332 glyceraldehyde-3-phosphate dehydrogenase 0.890 0.807 0.906 1e-139
350410869381 PREDICTED: glyceraldehyde-3-phosphate de 0.890 0.703 0.914 1e-138
340719385333 PREDICTED: glyceraldehyde-3-phosphate de 0.890 0.804 0.914 1e-138
156547538334 PREDICTED: glyceraldehyde-3-phosphate de 0.890 0.802 0.907 1e-137
383851102333 PREDICTED: glyceraldehyde-3-phosphate de 0.890 0.804 0.895 1e-137
22450121332 glyceraldehyde-3-phosphate dehydrogenase 0.890 0.807 0.914 1e-137
322794747 673 hypothetical protein SINV_01281 [Solenop 0.867 0.387 0.895 1e-136
67043757335 glyceraldehyde-3-phosphate dehydrogenase 0.890 0.8 0.9 1e-136
>gi|46561740|gb|AAT01075.1| glyceraldehyde 3-phosphate dehydrogenase [Homalodisca vitripennis] Back     alignment and taxonomy information
 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 247/268 (92%), Positives = 259/268 (96%)

Query: 34  VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
           VVNGNKIAV SERDPK IPW K+GAEYVVESTGVFTTI+KASAHL GGAKKVIISAPSAD
Sbjct: 65  VVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTIDKASAHLDGGAKKVIISAPSAD 124

Query: 94  APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKT 153
           APMFV GVNLDAYDPS+KV+SNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKT
Sbjct: 125 APMFVVGVNLDAYDPSYKVVSNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKT 184

Query: 154 VDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTV 213
           VDGPSGKLWRDGRGA QNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPV NVSVVDLTV
Sbjct: 185 VDGPSGKLWRDGRGAQQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVPNVSVVDLTV 244

Query: 214 RLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKF 273
           RLGKDATYD+IKAKVKAA+EGPL GILGYTED+VVSSDFIGD HSSIFDA+AGIPLNGKF
Sbjct: 245 RLGKDATYDDIKAKVKAASEGPLKGILGYTEDDVVSSDFIGDNHSSIFDAKAGIPLNGKF 304

Query: 274 VKLISWYDNEYGYSNRVVDLIKYIQTKD 301
           VKLISWYDNE+GYS+RV+DLIKY+QTKD
Sbjct: 305 VKLISWYDNEFGYSSRVIDLIKYMQTKD 332

Source: Homalodisca vitripennis

Species: Homalodisca vitripennis

Genus: Homalodisca

Family: Cicadellidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|53830712|gb|AAU95199.1| putative glyceraldehyde-3-phosphate dehydrogenase [Oncometopia nigricans] Back     alignment and taxonomy information
>gi|312306044|gb|ADQ73875.1| glyceraldehyde-3-phosphate dehydrogenase [Laodelphax striatella] Back     alignment and taxonomy information
>gi|350410869|ref|XP_003489162.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340719385|ref|XP_003398135.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|156547538|ref|XP_001607474.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|383851102|ref|XP_003701079.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|22450121|emb|CAD33827.1| glyceraldehyde-3-phosphate dehydrogenase [Plutella xylostella] Back     alignment and taxonomy information
>gi|322794747|gb|EFZ17694.1| hypothetical protein SINV_01281 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|67043757|gb|AAY63977.1| glyceraldehyde-3-phosphate dehydrogenase [Lysiphlebus testaceipes] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query301
UNIPROTKB|Q4U3L0333 Gapdh "Glyceraldehyde-3-phosph 0.890 0.804 0.757 1.9e-108
FB|FBgn0001091332 Gapdh1 "Glyceraldehyde 3 phosp 0.890 0.807 0.768 2.4e-108
FB|FBgn0001092332 Gapdh2 "Glyceraldehyde 3 phosp 0.890 0.807 0.764 3.9e-108
UNIPROTKB|Q01597332 Gapdh1 "Glyceraldehyde-3-phosp 0.890 0.807 0.75 1.1e-105
UNIPROTKB|Q05025333 GAPDH "Glyceraldehyde-3-phosph 0.890 0.804 0.705 4.5e-98
UNIPROTKB|O57479333 GAPDH "Glyceraldehyde-3-phosph 0.890 0.804 0.705 7.4e-98
UNIPROTKB|F1NH87325 GAPDH "Glyceraldehyde-3-phosph 0.890 0.824 0.701 1.5e-97
UNIPROTKB|F1NK14411 GAPDH "Glyceraldehyde-3-phosph 0.890 0.652 0.701 1.5e-97
UNIPROTKB|P00356333 GAPDH "Glyceraldehyde-3-phosph 0.890 0.804 0.701 1.5e-97
UNIPROTKB|A3FKF7333 GAPDH "Glyceraldehyde-3-phosph 0.890 0.804 0.701 8.4e-97
UNIPROTKB|Q4U3L0 Gapdh "Glyceraldehyde-3-phosphate dehydrogenase" [Glossina morsitans morsitans (taxid:37546)] Back     alignment and assigned GO terms
 Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
 Identities = 203/268 (75%), Positives = 222/268 (82%)

Query:    34 VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
             VVNG KI V  ERDP +I WA +GAEY+VESTGVFTTI+KASAH  GGAKKV+ISAPSAD
Sbjct:    65 VVNGKKITVFCERDPTNINWASAGAEYIVESTGVFTTIDKASAHFKGGAKKVVISAPSAD 124

Query:    94 APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
             APMFVCGVNL+AY P  KV+SNASCTTNCLAPLAKVIHDNFEIVEGLM            
Sbjct:   125 APMFVCGVNLEAYSPDMKVVSNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKT 184

Query:   154 XDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLTV 213
              DGPSGKLWRDGRGAAQNIIP            IP LNGKLTGMAFRVP  NVSVVDLTV
Sbjct:   185 VDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTV 244

Query:   214 RLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKF 273
             RLGK ATYDEIKAKV  A++GP+ GIL YTE+EVVS+DF+GDTHSS+FDA+AGIPLN KF
Sbjct:   245 RLGKSATYDEIKAKVLEASQGPMKGILDYTEEEVVSTDFVGDTHSSVFDAKAGIPLNDKF 304

Query:   274 VKLISWYDNEYGYSNRVVDLIKYIQTKD 301
             VKLISWYDNE+GYSNRV+DLIKY+Q+KD
Sbjct:   305 VKLISWYDNEFGYSNRVIDLIKYMQSKD 332
GO:0005737 "cytoplasm" evidence=ISS
GO:0015630 "microtubule cytoskeleton" evidence=ISS
FB|FBgn0001091 Gapdh1 "Glyceraldehyde 3 phosphate dehydrogenase 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0001092 Gapdh2 "Glyceraldehyde 3 phosphate dehydrogenase 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q01597 Gapdh1 "Glyceraldehyde-3-phosphate dehydrogenase" [Drosophila hydei (taxid:7224)] Back     alignment and assigned GO terms
UNIPROTKB|Q05025 GAPDH "Glyceraldehyde-3-phosphate dehydrogenase" [Coturnix japonica (taxid:93934)] Back     alignment and assigned GO terms
UNIPROTKB|O57479 GAPDH "Glyceraldehyde-3-phosphate dehydrogenase" [Columba livia (taxid:8932)] Back     alignment and assigned GO terms
UNIPROTKB|F1NH87 GAPDH "Glyceraldehyde-3-phosphate dehydrogenase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NK14 GAPDH "Glyceraldehyde-3-phosphate dehydrogenase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P00356 GAPDH "Glyceraldehyde-3-phosphate dehydrogenase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A3FKF7 GAPDH "Glyceraldehyde-3-phosphate dehydrogenase" [Mustela putorius furo (taxid:9669)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P17329G3P2_CAEEL1, ., 2, ., 1, ., 1, 20.77270.87370.7712yesN/A
Q4KYY3G3P_SPECI2, ., 6, ., 9, 9, ., -0.78350.89030.8048N/AN/A
P51640G3P_MESAU2, ., 6, ., 9, 9, ., -0.78980.85380.8237N/AN/A
P17244G3P_CRIGR2, ., 6, ., 9, 9, ., -0.78350.89030.8048yesN/A
P46406G3P_RABIT2, ., 6, ., 9, 9, ., -0.77610.89030.8048yesN/A
P07487G3P2_DROME1, ., 2, ., 1, ., 1, 20.85440.89030.8072yesN/A
P07486G3P1_DROME1, ., 2, ., 1, ., 1, 20.86190.89030.8072yesN/A
P78958G3P1_SCHPO1, ., 2, ., 1, ., 1, 20.74620.89030.7976noN/A
P0CN74G3P_CRYNJ1, ., 2, ., 1, ., 1, 20.75370.88700.7876yesN/A
P0CN75G3P_CRYNB1, ., 2, ., 1, ., 1, 20.75370.88700.7876N/AN/A
P04797G3P_RAT2, ., 6, ., 9, 9, ., -0.78730.89030.8048yesN/A
P09317G3P_USTMA1, ., 2, ., 1, ., 1, 20.77230.89030.7952N/AN/A
P48812G3P_BRUMA1, ., 2, ., 1, ., 1, 20.77490.88700.7876N/AN/A
P00356G3P_CHICK2, ., 6, ., 9, 9, ., -0.78730.89030.8048yesN/A
P00357G3P_HOMAM1, ., 2, ., 1, ., 1, 20.75740.89030.8048N/AN/A
P00355G3P_PIG2, ., 6, ., 9, 9, ., -0.77610.89030.8048yesN/A
P04406G3P_HUMAN2, ., 6, ., 9, 9, ., -0.79100.89030.8yesN/A
P54118G3P_NEUCR1, ., 2, ., 1, ., 1, 20.76860.89030.7928N/AN/A
Q9N2D5G3P_FELCA2, ., 6, ., 9, 9, ., -0.77980.89030.8048N/AN/A
Q05025G3P_COTJA2, ., 6, ., 9, 9, ., -0.79100.89030.8048N/AN/A
Q9UR38G3P_LENED1, ., 2, ., 1, ., 1, 20.75740.89030.7952N/AN/A
Q8NK47G3P_RHIMI1, ., 2, ., 1, ., 1, 20.77980.88700.7946N/AN/A
Q8WZN0G3P_SORMA1, ., 2, ., 1, ., 1, 20.76490.89030.7928N/AN/A
P32810G3P3_CAEBR1, ., 2, ., 1, ., 1, 20.78400.87370.7712N/AN/A
Q4U3L0G3P_GLOMM1, ., 2, ., 1, ., 1, 20.84700.89030.8048N/AN/A
Q28259G3P_CANFA2, ., 6, ., 9, 9, ., -0.77980.89030.8048yesN/A
P17330G3P3_CAEEL1, ., 2, ., 1, ., 1, 20.77270.87370.7712yesN/A
O44104G3P2_DROPS1, ., 2, ., 1, ., 1, 20.86190.89030.8072yesN/A
O44105G3P2_DROSU1, ., 2, ., 1, ., 1, 20.8680.83050.8223N/AN/A
Q5XJ10G3P_DANRE2, ., 6, ., 9, 9, ., -0.76860.89030.8048yesN/A
P80534G3P_JACOR1, ., 2, ., 1, ., 1, 20.76490.89030.7382N/AN/A
P56649G3P_PANVR1, ., 2, ., 1, ., 1, 20.76860.89030.8048N/AN/A
Q28554G3P_SHEEP2, ., 6, ., 9, 9, ., -0.77980.89030.8322N/AN/A
O01360G3P_ONCVO1, ., 2, ., 1, ., 1, 20.77850.88700.7876N/AN/A
O43026G3P2_SCHPO1, ., 2, ., 1, ., 1, 20.750.89030.8yesN/A
Q5R2J2G3P_PELSI2, ., 6, ., 9, 9, ., -0.77980.89030.8048N/AN/A
Q01597G3P_DROHY1, ., 2, ., 1, ., 1, 20.83950.89030.8072N/AN/A
A3FKF7G3P_MUSPF2, ., 6, ., 9, 9, ., -0.78730.89030.8048N/AN/A
P20287G3P_SCHMA1, ., 2, ., 1, ., 1, 20.78350.88700.7899N/AN/A
P51469G3P_XENLA2, ., 6, ., 9, 9, ., -0.75740.89030.8048N/AN/A
Q9Y796G3P_CRYCU1, ., 2, ., 1, ., 1, 20.78730.89030.7952N/AN/A
P53430G3P_MONPU1, ., 2, ., 1, ., 1, 20.74620.89030.7952N/AN/A
Q5RAB4G3P_PONAB2, ., 6, ., 9, 9, ., -0.78350.89030.8yesN/A
Q96UF1G3P3_MUCCL1, ., 2, ., 1, ., 1, 20.76950.89030.7905N/AN/A
P32809G3P2_CAEBR1, ., 2, ., 1, ., 1, 20.77650.87370.7712N/AN/A
P10096G3P_BOVIN2, ., 6, ., 9, 9, ., -0.77610.89030.8048yesN/A
Q96UF2G3P2_MUCCL1, ., 2, ., 1, ., 1, 20.77770.86710.7721N/AN/A
Q00584G3P_CLAPU1, ., 2, ., 1, ., 1, 20.76110.89030.7952N/AN/A
O57479G3P_COLLI2, ., 6, ., 9, 9, ., -0.79100.89030.8048N/AN/A
P16858G3P_MOUSE2, ., 6, ., 9, 9, ., -0.78350.89030.8048yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.2.1.120.991
3rd Layer1.2.10.976

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query301
PLN02272421 PLN02272, PLN02272, glyceraldehyde-3-phosphate deh 1e-165
PTZ00023337 PTZ00023, PTZ00023, glyceraldehyde-3-phosphate deh 1e-147
COG0057335 COG0057, GapA, Glyceraldehyde-3-phosphate dehydrog 1e-145
TIGR01534326 TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate deh 1e-144
PLN02358338 PLN02358, PLN02358, glyceraldehyde-3-phosphate deh 1e-129
PRK15425331 PRK15425, gapA, glyceraldehyde-3-phosphate dehydro 1e-121
PRK07729343 PRK07729, PRK07729, glyceraldehyde-3-phosphate deh 1e-109
PTZ00434361 PTZ00434, PTZ00434, cytosolic glyceraldehyde 3-pho 1e-109
PRK07403337 PRK07403, PRK07403, glyceraldehyde-3-phosphate deh 2e-95
pfam02800157 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate deh 3e-92
PLN03096395 PLN03096, PLN03096, glyceraldehyde-3-phosphate deh 2e-85
PLN02237442 PLN02237, PLN02237, glyceraldehyde-3-phosphate deh 5e-83
PRK08955334 PRK08955, PRK08955, glyceraldehyde-3-phosphate deh 9e-78
PRK08289477 PRK08289, PRK08289, glyceraldehyde-3-phosphate deh 1e-71
TIGR01532325 TIGR01532, E4PD_g-proteo, erythrose-4-phosphate de 4e-67
PRK13535336 PRK13535, PRK13535, erythrose 4-phosphate dehydrog 6e-64
PTZ00353342 PTZ00353, PTZ00353, glycosomal glyceraldehyde-3-ph 1e-43
pfam00044148 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate deh 3e-41
smart00846149 smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate de 9e-39
COG0136334 COG0136, Asd, Aspartate-semialdehyde dehydrogenase 2e-04
>gnl|CDD|177912 PLN02272, PLN02272, glyceraldehyde-3-phosphate dehydrogenase Back     alignment and domain information 
 Score =  466 bits (1201), Expect = e-165
 Identities = 192/263 (73%), Positives = 230/263 (87%)

Query: 35  VNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSADA 94
           +NG +I V S+RDP +IPW   GAEYVVES+GVFTT+EKASAHL GGAKKV+ISAPSADA
Sbjct: 152 INGKQIKVTSKRDPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADA 211

Query: 95  PMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTV 154
           PMFV GVN   Y P+  ++SNASCTTNCLAPLAKV+H+ F I+EGLMTTVHATTATQKTV
Sbjct: 212 PMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTV 271

Query: 155 DGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 214
           DGPS K WR GRGA+QNIIP++TGAAKAVGKV+P LNGKLTGMAFRVP  NVSVVDLT R
Sbjct: 272 DGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCR 331

Query: 215 LGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFV 274
           L K A+Y+++KA +K A+EGPL GILGYT+++VVS+DF+GD+ SSIFDA+AGI L+  F+
Sbjct: 332 LEKSASYEDVKAAIKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFM 391

Query: 275 KLISWYDNEYGYSNRVVDLIKYI 297
           KL+SWYDNE+GYSNRV+DLI+++
Sbjct: 392 KLVSWYDNEWGYSNRVLDLIEHM 414

Length = 421
>gnl|CDD|173322 PTZ00023, PTZ00023, glyceraldehyde-3-phosphate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|223135 COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|233453 TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate dehydrogenase, type I Back     alignment and domain information
>gnl|CDD|165999 PLN02358, PLN02358, glyceraldehyde-3-phosphate dehydrogenase Back     alignment and domain information
>gnl|CDD|185323 PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase A; Provisional Back     alignment and domain information
>gnl|CDD|236079 PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|185614 PTZ00434, PTZ00434, cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|180962 PRK07403, PRK07403, glyceraldehyde-3-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|217235 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Back     alignment and domain information
>gnl|CDD|215572 PLN03096, PLN03096, glyceraldehyde-3-phosphate dehydrogenase A; Provisional Back     alignment and domain information
>gnl|CDD|215131 PLN02237, PLN02237, glyceraldehyde-3-phosphate dehydrogenase B Back     alignment and domain information
>gnl|CDD|169599 PRK08955, PRK08955, glyceraldehyde-3-phosphate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|236219 PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|130595 TIGR01532, E4PD_g-proteo, erythrose-4-phosphate dehydrogenase Back     alignment and domain information
>gnl|CDD|184122 PRK13535, PRK13535, erythrose 4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|173546 PTZ00353, PTZ00353, glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|215675 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Back     alignment and domain information
>gnl|CDD|214851 smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Back     alignment and domain information
>gnl|CDD|223214 COG0136, Asd, Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 301
PTZ00434361 cytosolic glyceraldehyde 3-phosphate dehydrogenase 100.0
PRK15425331 gapA glyceraldehyde-3-phosphate dehydrogenase A; P 100.0
PTZ00023337 glyceraldehyde-3-phosphate dehydrogenase; Provisio 100.0
PLN02237442 glyceraldehyde-3-phosphate dehydrogenase B 100.0
PLN02272421 glyceraldehyde-3-phosphate dehydrogenase 100.0
PLN02358338 glyceraldehyde-3-phosphate dehydrogenase 100.0
PRK07403337 glyceraldehyde-3-phosphate dehydrogenase; Reviewed 100.0
PLN03096395 glyceraldehyde-3-phosphate dehydrogenase A; Provis 100.0
PRK08955334 glyceraldehyde-3-phosphate dehydrogenase; Validate 100.0
PRK07729343 glyceraldehyde-3-phosphate dehydrogenase; Validate 100.0
PRK13535336 erythrose 4-phosphate dehydrogenase; Provisional 100.0
PTZ00353342 glycosomal glyceraldehyde-3-phosphate dehydrogenas 100.0
TIGR01534327 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, 100.0
PRK08289477 glyceraldehyde-3-phosphate dehydrogenase; Reviewed 100.0
TIGR01532325 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas 100.0
COG0057335 GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt 100.0
KOG0657|consensus285 100.0
PF02800157 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, 100.0
TIGR01546333 GAPDH-II_archae glyceraldehyde-3-phosphate dehydro 100.0
PRK06901322 aspartate-semialdehyde dehydrogenase; Provisional 100.0
COG0136334 Asd Aspartate-semialdehyde dehydrogenase [Amino ac 100.0
TIGR01745366 asd_gamma aspartate-semialdehyde dehydrogenase, ga 100.0
PRK04207341 glyceraldehyde-3-phosphate dehydrogenase; Provisio 100.0
TIGR01296339 asd_B aspartate-semialdehyde dehydrogenase (peptid 100.0
PRK14874334 aspartate-semialdehyde dehydrogenase; Provisional 100.0
PRK06728347 aspartate-semialdehyde dehydrogenase; Provisional 100.0
PRK06598369 aspartate-semialdehyde dehydrogenase; Reviewed 100.0
smart00846149 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, 99.97
PF00044151 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, 99.97
PRK08040336 putative semialdehyde dehydrogenase; Provisional 99.96
PRK05671336 aspartate-semialdehyde dehydrogenase; Reviewed 99.96
PLN02383344 aspartate semialdehyde dehydrogenase 99.95
TIGR00978341 asd_EA aspartate-semialdehyde dehydrogenase (non-p 99.93
PRK08664349 aspartate-semialdehyde dehydrogenase; Reviewed 99.92
PRK00436343 argC N-acetyl-gamma-glutamyl-phosphate reductase; 99.87
TIGR01850346 argC N-acetyl-gamma-glutamyl-phosphate reductase, 99.84
KOG4777|consensus361 99.84
PLN02968381 Probable N-acetyl-gamma-glutamyl-phosphate reducta 99.81
PRK11863313 N-acetyl-gamma-glutamyl-phosphate reductase; Provi 99.67
TIGR01851310 argC_other N-acetyl-gamma-glutamyl-phosphate reduc 99.57
PF02774184 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimer 99.25
PRK08300302 acetaldehyde dehydrogenase; Validated 99.13
TIGR03215285 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati 98.6
COG0002349 ArgC Acetylglutamate semialdehyde dehydrogenase [A 98.48
PF01118121 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi 97.39
KOG4354|consensus340 96.27
smart00859122 Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin 95.86
COG4569310 MhpF Acetaldehyde dehydrogenase (acetylating) [Sec 83.38
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.5e-107  Score=773.26  Aligned_cols=290  Identities=54%  Similarity=0.868  Sum_probs=281.6

Q ss_pred             ccceeccCCCCCCceEEe--------cCCceEECCEEEEEE-ecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCC
Q psy6885          11 ARFSSDEDDLKSPSTFFS--------CKWPPVVNGNKIAVH-SERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGG   81 (301)
Q Consensus        11 ~~~~~d~~~g~~~~~v~a--------~~~~l~i~gk~I~v~-~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aG   81 (301)
                      -+|||||+||+|+++|+.        +++.|.+||++|.++ ++++|+++||+++|+|||+||||.|++++.+++|+++|
T Consensus        49 yLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~G  128 (361)
T PTZ00434         49 YQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGG  128 (361)
T ss_pred             eeeeeecCCCCcCCceeecccccccccCCEEEECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcC
Confidence            479999999999999998        899999999999996 99999999999999999999999999999999999999


Q ss_pred             CCeEEecCCCCC-CCeEEecCCcCCCCC-CccEEecCCcchhhccchhhhh-hhccCeeEEEEeeeeccccccccccCCC
Q psy6885          82 AKKVIISAPSAD-APMFVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVI-HDNFEIVEGLMTTVHATTATQKTVDGPS  158 (301)
Q Consensus        82 ak~ViIsaps~d-~plvV~gVN~~~~~~-~~~IVsn~sCtT~~Lap~lk~L-~~~fgI~~~~~TT~ha~s~~q~~lD~~~  158 (301)
                      |||||||+|++| .|+||+||||+.|++ .++||||+|||||||||++|+| ||+|||++++|||+||||++|+++|+++
T Consensus       129 AKkViiSAP~~d~~~t~V~GVN~~~y~~~~~~IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~~~  208 (361)
T PTZ00434        129 AKKVVISAPASGGAKTIVMGVNQHEYSPTEHHVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVS  208 (361)
T ss_pred             CCEEEECCCCCCCCceEEEcCChHHcCcccCcEEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccCcC
Confidence            999999999887 579999999999998 5789999999999999999999 7999999999999999999999999997


Q ss_pred             CCCcccccccccccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCc
Q psy6885         159 GKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAG  238 (301)
Q Consensus       159 ~~d~r~~r~~a~NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkg  238 (301)
                      ++||||+|++++||||++||++|++++|||+|+||++|+++||||++||++||+++++|++++||||++|++|++++|||
T Consensus       209 ~kD~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~G~a~RVPt~nvS~vDLt~~l~k~~t~eein~a~k~aa~~~lkg  288 (361)
T PTZ00434        209 VKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRASQTYMKG  288 (361)
T ss_pred             cccccccccccccCccCCcchhhhhceeccccCCceeeEEEecccCcEeEEEEEEEeCCCCCHHHHHHHHHHhhhccccC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccceeeecCCCCccceEeeCCCCeeee----CCeEEEEEEecCCchhhhhHHHHHHHHhhc
Q psy6885         239 ILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLN----GKFVKLISWYDNEYGYSNRVVDLIKYIQTK  300 (301)
Q Consensus       239 il~~~e~~~VS~D~~~~~~s~i~d~~~~~~~~----~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~  300 (301)
                      ||+|+|+|+||+||+|++||+|||+.+|++++    ++++|+++||||||||||||+||+.||.+.
T Consensus       289 Il~y~~~plVS~Df~g~~~Ssi~D~~~t~v~~~~~~~~~vKv~~WYDNEwGys~Rl~dl~~~~~~~  354 (361)
T PTZ00434        289 ILGFTDDELVSADFINDNRSSIYDSKATLQNNLPGERRFFKIVSWYDNEWGYSHRVVDLVRYMAAK  354 (361)
T ss_pred             cccccCCCccccccCCCCCCeEEEhhhCeEeccCCCCCEEEEEEEecCchHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999996    489999999999999999999999999753

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional Back     alignment and domain information
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B Back     alignment and domain information
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase Back     alignment and domain information
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase Back     alignment and domain information
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional Back     alignment and domain information
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated Back     alignment and domain information
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated Back     alignment and domain information
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional Back     alignment and domain information
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I Back     alignment and domain information
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase Back     alignment and domain information
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0657|consensus Back     alignment and domain information
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate Back     alignment and domain information
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II Back     alignment and domain information
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional Back     alignment and domain information
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial Back     alignment and domain information
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional Back     alignment and domain information
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) Back     alignment and domain information
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional Back     alignment and domain information
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional Back     alignment and domain information
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed Back     alignment and domain information
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Back     alignment and domain information
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate Back     alignment and domain information
>PRK08040 putative semialdehyde dehydrogenase; Provisional Back     alignment and domain information
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed Back     alignment and domain information
>PLN02383 aspartate semialdehyde dehydrogenase Back     alignment and domain information
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) Back     alignment and domain information
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed Back     alignment and domain information
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated Back     alignment and domain information
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form Back     alignment and domain information
>KOG4777|consensus Back     alignment and domain information
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase Back     alignment and domain information
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional Back     alignment and domain information
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form Back     alignment and domain information
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate Back     alignment and domain information
>PRK08300 acetaldehyde dehydrogenase; Validated Back     alignment and domain information
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) Back     alignment and domain information
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate Back     alignment and domain information
>KOG4354|consensus Back     alignment and domain information
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain Back     alignment and domain information
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query301
1szj_G333 Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydr 1e-107
1znq_O338 Crsytal Structure Of Human Liver Gapdh Length = 338 1e-106
1ihx_A333 Crystal Structure Of Two D-Glyceraldehyde-3-Phospha 1e-106
1u8f_O335 Crystal Structure Of Human Placental Glyceraldehyde 1e-106
1dss_G333 Structure Of Active-Site Carboxymethylated D-Glycer 1e-106
1gpd_G334 Studies Of Asymmetry In The Three-Dimensional Struc 1e-105
4gpd_1333 The Structure Of Lobster Apo-D-Glyceraldehyde-3-Pho 1e-105
1j0x_O332 Crystal Structure Of The Rabbit Muscle Glyceraldehy 1e-104
3gpd_R334 Twinning In Crystals Of Human Skeletal Muscle D-Gly 2e-99
3h9e_B346 Crystal Structure Of Human Sperm-Specific Glycerald 1e-95
3e5r_O337 Crystal Structure And Functional Analysis Of Glycer 2e-94
3e6a_O336 Crystal Structure And Functional Analysis Of Glycer 3e-94
2vyn_D334 Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotet 5e-91
3pym_A332 Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Res 7e-91
4iq8_A340 Crystal Structure Of Glyceraldehyde-3-phosphate Deh 8e-91
2i5p_O342 Crystal Structure Of Glyceraldehyde-3-Phosphate Deh 3e-87
1s7c_A331 Crystal Structure Of Mes Buffer Bound Form Of Glyce 3e-87
1gad_O330 Comparison Of The Structures Of Wild Type And A N31 4e-87
1gae_O330 Comparison Of The Structures Of Wild Type And A N31 2e-86
2vyn_A331 Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotet 3e-86
3cps_A354 Crystal Structure Of Cryptosporidium Parvum Glycera 8e-85
1vsu_A359 Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate 9e-85
1dc4_A330 Structural Analysis Of Glyceraldehyde 3-Phosphate D 5e-83
3cif_A359 Crystal Structure Of C153s Mutant Glyceraldehyde 3- 6e-83
2b4r_O345 Crystal Structure Of Glyceraldehyde-3-Phosphate Deh 1e-82
1ywg_O337 The Structure Of Glyceraldehyde-3-Phosphate Dehydro 4e-82
3sth_A361 Crystal Structure Of Glyceraldehyde-3-Phosphate Deh 1e-77
2x0n_A359 Structure Of Glycosomal Glyceraldehyde-3-Phosphate 3e-71
1k3t_A359 Structure Of Glycosomal Glyceraldehyde-3-Phosphate 7e-71
1gd1_O334 Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydr 8e-71
1a7k_A360 Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase 9e-71
1gyp_A358 Crystal Structure Of Glycosomal Glyceraldehyde-3-Ph 1e-70
1dbv_O334 Glyceraldehyde-3-Phosphate Dehydrogenase Mutant Wit 1e-70
3dbv_O334 Glyceraldehyde-3-Phosphate Dehydrogenase Mutant Wit 2e-70
1nq5_O334 Glyceraldehyde-3-Phosphate Dehydrogenase Mutant Wit 1e-69
1npt_O334 Glyceraldehyde-3-Phosphate Dehydrogenase Mutant Wit 1e-69
3dmt_C359 Structure Of Glycosomal Glyceraldehyde-3-Phosphate 2e-69
1cer_O331 Determinants Of Enzyme Thermostability Observed In 1e-63
2g82_O331 High Resolution Structures Of Thermus Aquaticus Gly 2e-62
1hdg_O332 The Crystal Structure Of Holo-glyceraldehyde-3-phos 2e-61
3hja_A356 Crystal Structure Of Glyceraldehyde-3-Phosphate Deh 6e-60
1vc2_A331 Crystal Structure Of Glyceraldehyde 3-Phosphate Deh 7e-60
3gnq_A344 Crystal Structure Of Glyceraldehyde-3-Phosphate Deh 7e-56
3doc_A335 Crystal Structure Of Trka Glyceraldehyde-3-Phosphat 5e-55
3l0d_A356 Crystal Structure Of Glyceraldehyde-3-phosphate Deh 2e-52
2ep7_A342 Structural Study Of Project Id Aq_1065 From Aquifex 9e-52
1obf_O335 The Crystal Structure Of Glyceraldehyde 3-Phosphate 6e-51
4dib_A345 The Crystal Structure Of Glyceraldehyde-3-Phosphate 1e-50
2d2i_A380 Crystal Structure Of Nadp-Dependent Glyceraldehyde- 2e-49
3b1j_A339 Crystal Structure Of Dehydrogenese Length = 339 2e-49
2pkq_O368 Crystal Structure Of The Photosynthetic A2b2-Glycer 1e-47
1nbo_O337 The Dual Coenzyme Specificity Of Photosynthetic Gly 1e-47
1rm5_O337 Crystal Structure Of Mutant S188a Of Photosynthetic 1e-47
1rm3_O337 Crystal Structure Of Mutant T33a Of Photosynthetic 1e-47
2pkr_O365 Crystal Structure Of (A+cte)4 Chimeric Form Of Phot 1e-47
3vaz_P344 Crystal Structure Of Staphylococcal Gapdh1 In A Hex 2e-47
3lvf_P338 Crystal Structure Of Holo Glyceraldehyde-3-Phosphat 2e-47
3lc1_P336 Crystal Structure Of H178n Mutant Of Glyceraldehyde 3e-47
3lc7_O339 Crystal Structure Of Apo Glyceraldehyde-3-Phosphate 3e-47
3k73_Q336 Crystal Structure Of Phosphate Bound Holo Glycerald 3e-47
1jn0_O335 Crystal Structure Of The Non-Regulatory A4 Isoform 4e-47
3ksd_Q336 Crystal Structure Of C151s+h178n Mutant Of Glyceral 3e-46
3hq4_R336 Crystal Structure Of C151s Mutant Of Glyceraldehyde 3e-46
3k9q_Q336 Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde 5e-46
3k2b_A337 Crystal Structure Of Photosynthetic A4 Isoform Glyc 2e-45
2x5j_O339 Crystal Structure Of The Apoform Of The D-Erythrose 2e-40
2xf8_A338 Structure Of The D-Erythrose-4-Phosphate Dehydrogen 2e-40
2x5k_O339 Structure Of An Active Site Mutant Of The D-Erythro 5e-38
>pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase From Palinurus Versicolor Refined 2.0 Angstrom Resolution Length = 333 Back     alignment and structure 
Iteration: 1

 Score =  384 bits (985), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/268 (68%), Positives = 212/268 (79%)
Query: 34  VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
           VV+G KI V +E  P++IPW+K+GAEY+VESTGVFTTIEKASAH  GGAKKVIISAPSAD
Sbjct: 64  VVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPSAD 123
Query: 94  APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 153
           APMFVCGVNL+ Y    KV+SNASCTTNCLAP+AKV+H+NFEIVEGLM            
Sbjct: 124 APMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVTATQKT 183
Query: 154 XDGPSGKLWRDGRGAAQNIIPXXXXXXXXXXXXIPALNGKLTGMAFRVPVANVSVVDLTV 213
            DGPS K WR GRGAAQNIIP            IP L+GKLTGMAFRVP  NVSVVDLTV
Sbjct: 184 VDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSVVDLTV 243
Query: 214 RLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKF 273
           RLGK+ +YD+IKA +KAA+EGPL G+LGYTED+VVS DF GD  SSIFDA+AGI L+  F
Sbjct: 244 RLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTF 303
Query: 274 VKLISWYDNEYGYSNRVVDLIKYIQTKD 301
           VK++SWYDNE+GYS RV+DLIK++Q  D
Sbjct: 304 VKVVSWYDNEFGYSQRVIDLIKHMQKVD 331
>pdb|1ZNQ|O Chain O, Crsytal Structure Of Human Liver Gapdh Length = 338 Back     alignment and structure
>pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate Dehydrogenase Complexes: A Case Of Asymmetry Length = 333 Back     alignment and structure
>pdb|1U8F|O Chain O, Crystal Structure Of Human Placental Glyceraldehyde-3- Phosphate Dehydrogenase At 1.75 Resolution Length = 335 Back     alignment and structure
>pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethylated D-Glyceraldehyde-3- Phosphate Dehydrogenase From Palinurus Versicolor Length = 333 Back     alignment and structure
>pdb|1GPD|G Chain G, Studies Of Asymmetry In The Three-Dimensional Structure Of Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase Length = 334 Back     alignment and structure
>pdb|4GPD|1 Chain 1, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase At 3.0 Angstroms Resolution Length = 333 Back     alignment and structure
>pdb|1J0X|O Chain O, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3- Phosphate Dehydrogenase (Gapdh) Length = 332 Back     alignment and structure
>pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle D-Glyceraldehyde-3- Phosphate Dehydrogenase Length = 334 Back     alignment and structure
>pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza Sativa Length = 337 Back     alignment and structure
>pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza Sativa Length = 336 Back     alignment and structure
>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer Length = 334 Back     alignment and structure
>pdb|3PYM|A Chain A, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution Length = 332 Back     alignment and structure
>pdb|4IQ8|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate Dehydrogenase 3 From Saccharomyces Cerevisiae Length = 340 Back     alignment and structure
>pdb|2I5P|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase Isoform 1 From K. Marxianus Length = 342 Back     alignment and structure
>pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of Glyceraldehyde 3- Phosphate Dehydrogenase From Escherichia Coli Length = 331 Back     alignment and structure
>pdb|1GAD|O Chain O, Comparison Of The Structures Of Wild Type And A N313t Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate Dehydrogenases: Implication For Nad Binding And Cooperativity Length = 330 Back     alignment and structure
>pdb|1GAE|O Chain O, Comparison Of The Structures Of Wild Type And A N313t Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate Dehydrogenases: Implication For Nad Binding And Cooperativity Length = 330 Back     alignment and structure
>pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer Length = 331 Back     alignment and structure
>pdb|3CPS|A Chain A, Crystal Structure Of Cryptosporidium Parvum Glyceraldehyde-3-Phosphate Dehydrogenase Length = 354 Back     alignment and structure
>pdb|1VSU|A Chain A, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate Dehydrogenase From Cryptosporidium Parvum Length = 359 Back     alignment and structure
>pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate Dehydrogenase From Escherichia Coli: Direct Evidence For Substrate Binding And Cofactor-Induced Conformational Changes Length = 330 Back     alignment and structure
>pdb|3CIF|A Chain A, Crystal Structure Of C153s Mutant Glyceraldehyde 3-Phosphate Dehydrogenase From Cryptosporidium Parvum Length = 359 Back     alignment and structure
>pdb|2B4R|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Plasmodium Falciparum At 2.25 Angstrom Resolution Reveals Intriguing Extra Electron Density In The Active Site Length = 345 Back     alignment and structure
>pdb|1YWG|O Chain O, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Plasmodium Falciparum Length = 337 Back     alignment and structure
>pdb|3STH|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Toxoplasma Gondii Length = 361 Back     alignment and structure
>pdb|2X0N|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Trypanosoma Brucei Determined From Laue Data Length = 359 Back     alignment and structure
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Trypanosoma Cruzi Complexed With Chalepin, A Coumarin Derivative Inhibitor Length = 359 Back     alignment and structure
>pdb|1GD1|O Chain O, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus Stearothermophilus At 1.8 Angstroms Resolution Length = 334 Back     alignment and structure
>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A Monoclinic Crystal Form Length = 360 Back     alignment and structure
>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Leishmania Mexicana: Implications For Structure-Based Drug Design And A New Position For The Inorganic Phosphate Binding Site Length = 358 Back     alignment and structure
>pdb|1DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp 32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188 Replaced By Ser Complexed With Nad+ Length = 334 Back     alignment and structure
>pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu 33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188 Replaced By Ser Complexed With Nad+ Length = 334 Back     alignment and structure
>pdb|1NQ5|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys 149 Replaced By Ser Complexed With Nad+ Length = 334 Back     alignment and structure
>pdb|1NPT|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys 149 Replaced By Ala Complexed With Nad+ Length = 334 Back     alignment and structure
>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Trypanosoma Cruzi In Complex With The Irreversible Iodoacetate Inhibitor Length = 359 Back     alignment and structure
>pdb|1CER|O Chain O, Determinants Of Enzyme Thermostability Observed In The Molecular Structure Of Thermus Aquaticus D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5 Angstroms Resolution Length = 331 Back     alignment and structure
>pdb|2G82|O Chain O, High Resolution Structures Of Thermus Aquaticus Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's Loop Motion In Catalysis Length = 331 Back     alignment and structure
>pdb|1HDG|O Chain O, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate Dehydrogenase From The Hyperthermophilic Bacterium Thermotoga Maritima At 2.5 Angstroms Resolution Length = 332 Back     alignment and structure
>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Borrelia Burgdorferi Length = 356 Back     alignment and structure
>pdb|1VC2|A Chain A, Crystal Structure Of Glyceraldehyde 3-Phosphate Dehydrogenase From Thermus Thermophilus Hb8 Length = 331 Back     alignment and structure
>pdb|3GNQ|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase, Type I From Burkholderia Pseudomallei Length = 344 Back     alignment and structure
>pdb|3DOC|A Chain A, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate Dehydrogenase From Brucella Melitensis Length = 335 Back     alignment and structure
>pdb|3L0D|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate Dehydrogenase From Bartonella Henselae With Bound Nad Length = 356 Back     alignment and structure
>pdb|2EP7|A Chain A, Structural Study Of Project Id Aq_1065 From Aquifex Aeolicus Vf5 Length = 342 Back     alignment and structure
>pdb|1OBF|O Chain O, The Crystal Structure Of Glyceraldehyde 3-Phosphate Dehydrogenase From Alcaligenes Xylosoxidans At 1.7 Resolution. Length = 335 Back     alignment and structure
>pdb|4DIB|A Chain A, The Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus Anthracis Str. Sterne Length = 345 Back     alignment and structure
>pdb|2D2I|A Chain A, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3- Phosphate Dehydrogenase From Synechococcus Sp. Complexed With Nadp+ Length = 380 Back     alignment and structure
>pdb|3B1J|A Chain A, Crystal Structure Of Dehydrogenese Length = 339 Back     alignment and structure
>pdb|2PKQ|O Chain O, Crystal Structure Of The Photosynthetic A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase, Complexed With Nadp Length = 368 Back     alignment and structure
>pdb|1NBO|O Chain O, The Dual Coenzyme Specificity Of Photosynthetic Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By The Crystal Structure Of A4 Isoform Complexed With Nad Length = 337 Back     alignment and structure
>pdb|1RM5|O Chain O, Crystal Structure Of Mutant S188a Of Photosynthetic Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform, Complexed With Nadp Length = 337 Back     alignment and structure
>pdb|1RM3|O Chain O, Crystal Structure Of Mutant T33a Of Photosynthetic Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform, Complexed With Nadp Length = 337 Back     alignment and structure
>pdb|2PKR|O Chain O, Crystal Structure Of (A+cte)4 Chimeric Form Of Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase, Complexed With Nadp Length = 365 Back     alignment and structure
>pdb|3VAZ|P Chain P, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal Space Group Length = 344 Back     alignment and structure
>pdb|3LVF|P Chain P, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin Resistant Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution Length = 338 Back     alignment and structure
>pdb|3LC1|P Chain P, Crystal Structure Of H178n Mutant Of Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1) From Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.0 Angstrom Resolution. Length = 336 Back     alignment and structure
>pdb|3LC7|O Chain O, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicllin Resistant Staphylococcus Aureus (Mrsa252) Length = 339 Back     alignment and structure
>pdb|3K73|Q Chain Q, Crystal Structure Of Phosphate Bound Holo Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252 At 2.5 Angstrom Resolution Length = 336 Back     alignment and structure
>pdb|1JN0|O Chain O, Crystal Structure Of The Non-Regulatory A4 Isoform Of Spinach Chloroplast Glyceraldehyde-3-Phosphate Dehydrogenase Complexed With Nadp Length = 335 Back     alignment and structure
>pdb|3KSD|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2 Angstrom Resolution Length = 336 Back     alignment and structure
>pdb|3HQ4|R Chain R, Crystal Structure Of C151s Mutant Of Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1) Complexed With Nad From Staphylococcus Aureus Mrsa252 At 2.2 Angstrom Resolution Length = 336 Back     alignment and structure
>pdb|3K9Q|Q Chain Q, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde 3-Phosphate Dehydrogenase 1 From Methicillin Resistant Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom Resolution Length = 336 Back     alignment and structure
>pdb|3K2B|A Chain A, Crystal Structure Of Photosynthetic A4 Isoform Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With Nad, From Arabidopsis Thaliana Length = 337 Back     alignment and structure
>pdb|2X5J|O Chain O, Crystal Structure Of The Apoform Of The D-Erythrose-4-Phosphate Dehydrogenase From E. Coli Length = 339 Back     alignment and structure
>pdb|2XF8|A Chain A, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase From E.Coli In Complex With A Nad Cofactor Analog (3- Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate Anion Length = 338 Back     alignment and structure
>pdb|2X5K|O Chain O, Structure Of An Active Site Mutant Of The D-Erythrose-4-Phosphate Dehydrogenase From E. Coli Length = 339 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query301
3e5r_O337 PP38, glyceraldehyde-3-phosphate dehydrogenase, cy 0.0
3h9e_O346 Glyceraldehyde-3-phosphate dehydrogenase, testis-; 0.0
3pym_A332 GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 0.0
1u8f_O335 GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l 0.0
1gad_O330 D-glyceraldehyde-3-phosphate dehydrogenase; oxidor 0.0
3cps_A354 Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g 0.0
2b4r_O345 Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st 0.0
3ids_C359 GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g 0.0
3cmc_O334 GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m 1e-179
3lvf_P338 GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1e-172
1rm4_O337 Glyceraldehyde 3-phosphate dehydrogenase A; rossma 1e-170
2g82_O331 GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G 1e-170
4dib_A345 GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n 1e-169
2d2i_A380 Glyceraldehyde 3-phosphate dehydrogenase; rossmann 1e-168
3hja_A356 GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n 1e-168
3b1j_A339 Glyceraldehyde 3-phosphate dehydrogenase (NADP+); 1e-167
2ep7_A342 GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o 1e-167
1hdg_O332 Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o 1e-164
3doc_A335 Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, 1e-155
2x5j_O339 E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid 1e-148
1obf_O335 Glyceraldehyde 3-phosphate dehydrogenase; glycolyt 1e-146
1cf2_P337 Protein (glyceraldehyde-3-phosphate dehydrogenase) 1e-102
2yyy_A343 Glyceraldehyde-3-phosphate dehydrogenase; glyceral 2e-81
2czc_A334 Glyceraldehyde-3-phosphate dehydrogenase; glycolys 2e-69
1b7g_O340 Protein (glyceraldehyde 3-phosphate dehydrogenase; 1e-45
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O Length = 337 Back     alignment and structure
 Score =  579 bits (1495), Expect = 0.0
 Identities = 184/267 (68%), Positives = 223/267 (83%)

Query: 34  VVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPSAD 93
           ++    + V   R+P +IPWA++GAEYVVESTGVFT  EKA+AHL GGAKKV+ISAPS D
Sbjct: 70  LLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKD 129

Query: 94  APMFVCGVNLDAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKT 153
           APMFVCGVN D Y     ++SNASCTTNCLAPLAKVIHDNF I+EGLMTTVHA TATQKT
Sbjct: 130 APMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHAITATQKT 189

Query: 154 VDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTV 213
           VDGPS K WR GR A+ NIIP++TGAAKAVGKV+P LNGKLTGM+FRVP  +VSVVDLTV
Sbjct: 190 VDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTV 249

Query: 214 RLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKF 273
           R+ K A+YD IK+ +K+A+EG L GI+GY E+++VS+DF+GD+ SSIFDA+AGI LN  F
Sbjct: 250 RIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNF 309

Query: 274 VKLISWYDNEYGYSNRVVDLIKYIQTK 300
           VKL++WYDNE+GYSNRV+DLI+++   
Sbjct: 310 VKLVAWYDNEWGYSNRVIDLIRHMAKT 336
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* Length = 346 Back     alignment and structure
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O* Length = 332 Back     alignment and structure
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 Length = 335 Back     alignment and structure
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* Length = 330 Back     alignment and structure
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* Length = 354 Back     alignment and structure
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O* Length = 345 Back     alignment and structure
>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A* Length = 359 Back     alignment and structure
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* Length = 334 Back     alignment and structure
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O* Length = 338 Back     alignment and structure
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* Length = 337 Back     alignment and structure
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* Length = 331 Back     alignment and structure
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis} Length = 345 Back     alignment and structure
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A Length = 380 Back     alignment and structure
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31} Length = 356 Back     alignment and structure
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* Length = 339 Back     alignment and structure
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus} Length = 342 Back     alignment and structure
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 Length = 332 Back     alignment and structure
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A* Length = 335 Back     alignment and structure
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* Length = 339 Back     alignment and structure
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A* Length = 335 Back     alignment and structure
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 Length = 337 Back     alignment and structure
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} Length = 343 Back     alignment and structure
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 Length = 334 Back     alignment and structure
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 Length = 340 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query301
3h9e_O346 Glyceraldehyde-3-phosphate dehydrogenase, testis-; 100.0
3pym_A332 GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 100.0
3v1y_O337 PP38, glyceraldehyde-3-phosphate dehydrogenase, cy 100.0
4dib_A345 GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n 100.0
3doc_A335 Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, 100.0
3ids_C359 GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g 100.0
3lvf_P338 GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 100.0
3hja_A356 GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n 100.0
1obf_O335 Glyceraldehyde 3-phosphate dehydrogenase; glycolyt 100.0
2b4r_O345 Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st 100.0
2ep7_A342 GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o 100.0
2g82_O331 GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G 100.0
2d2i_A380 Glyceraldehyde 3-phosphate dehydrogenase; rossmann 100.0
1rm4_O337 Glyceraldehyde 3-phosphate dehydrogenase A; rossma 100.0
3cmc_O334 GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m 100.0
3b1j_A339 Glyceraldehyde 3-phosphate dehydrogenase (NADP+); 100.0
1hdg_O332 Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o 100.0
3cps_A354 Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g 100.0
3e5r_O337 PP38, glyceraldehyde-3-phosphate dehydrogenase, cy 100.0
1gad_O330 D-glyceraldehyde-3-phosphate dehydrogenase; oxidor 100.0
1u8f_O335 GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l 100.0
2x5j_O339 E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid 100.0
2yyy_A343 Glyceraldehyde-3-phosphate dehydrogenase; glyceral 100.0
2yv3_A331 Aspartate-semialdehyde dehydrogenase; aspartate pa 100.0
2r00_A336 Aspartate-semialdehyde dehydrogenase; conformation 100.0
2hjs_A340 USG-1 protein homolog; aspartate-semialdehyde dehy 100.0
1t4b_A367 Aspartate-semialdehyde dehydrogenase; asadh, HOSR, 100.0
1cf2_P337 Protein (glyceraldehyde-3-phosphate dehydrogenase) 100.0
1b7g_O340 Protein (glyceraldehyde 3-phosphate dehydrogenase; 100.0
2czc_A334 Glyceraldehyde-3-phosphate dehydrogenase; glycolys 100.0
1xyg_A359 Putative N-acetyl-gamma-glutamyl-phosphate reduct; 100.0
2ep5_A350 350AA long hypothetical aspartate-semialdehyde deh 100.0
3uw3_A377 Aspartate-semialdehyde dehydrogenase; structural g 100.0
3pzr_A370 Aspartate-semialdehyde dehydrogenase; NADP, oxidor 100.0
3tz6_A344 Aspartate-semialdehyde dehydrogenase; asadh, ASD, 100.0
4dpk_A359 Malonyl-COA/succinyl-COA reductase; dinucleotide b 100.0
4dpl_A359 Malonyl-COA/succinyl-COA reductase; dinucleotide b 100.0
3pwk_A366 Aspartate-semialdehyde dehydrogenase; NADP binding 100.0
1ys4_A354 Aspartate-semialdehyde dehydrogenase; oxidoreducta 100.0
2ozp_A345 N-acetyl-gamma-glutamyl-phosphate reductase; amino 99.97
3hsk_A381 Aspartate-semialdehyde dehydrogenase; candida albi 99.97
3dr3_A337 N-acetyl-gamma-glutamyl-phosphate reductase; csgid 99.97
2nqt_A352 N-acetyl-gamma-glutamyl-phosphate reductase; apopr 99.95
1vkn_A351 N-acetyl-gamma-glutamyl-phosphate reductase; TM178 99.88
1nvm_B312 Acetaldehyde dehydrogenase (acylating), 4-hydroxy- 97.08
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* Back     alignment and structure
Probab=100.00  E-value=2.9e-112  Score=808.63  Aligned_cols=289  Identities=66%  Similarity=1.031  Sum_probs=285.5

Q ss_pred             cceeccCCCCCCceEEecCCceEECCEEEEEEecCCCCCCCcccccccEEEEecCCcCCHHHHHHHHHCCCCeEEecCCC
Q psy6885          12 RFSSDEDDLKSPSTFFSCKWPPVVNGNKIAVHSERDPKDIPWAKSGAEYVVESTGVFTTIEKASAHLAGGAKKVIISAPS   91 (301)
Q Consensus        12 ~~~~d~~~g~~~~~v~a~~~~l~i~gk~I~v~~~~~~~~~~w~~~gvdiv~e~tG~f~s~e~a~~hl~aGak~ViIsaps   91 (301)
                      ||||||+||+|+|||+++|++|.||||+|+|+++++|++|+|+++|+||||||||.|+++|+|++|+++||||||||+|+
T Consensus        49 l~~yDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~dp~~i~W~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsaps  128 (346)
T 3h9e_O           49 MFKYDSTHGRYKGSVEFRNGQLVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPS  128 (346)
T ss_dssp             HHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGGCCGGGGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEESSCC
T ss_pred             cccccCCCCCCCCcEEEcCCEEEECCEEEEEEecCChhhCCcccccccEEEEeccccCCHHHHHHHHHcCCCEEEECCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEecCCcCCCCC-CccEEecCCcchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCccccccccc
Q psy6885          92 ADAPMFVCGVNLDAYDP-SFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQ  170 (301)
Q Consensus        92 ~d~plvV~gVN~~~~~~-~~~IVsn~sCtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~a~  170 (301)
                      +|+||||||||++.|++ +++||||||||||||+|++|+|||+|||++++||||||+|++|+++|+|++++||++|++++
T Consensus       129 ~d~plvV~gVN~~~~~~~~~~IISNasCTTn~Lap~lkvL~d~fGI~~g~mTTvhA~T~tQ~~~Dg~~~kd~r~~r~aa~  208 (346)
T 3h9e_O          129 PDAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMTTVHSYTATQKTVDGPSRKAWRDGRGAHQ  208 (346)
T ss_dssp             SSSCBCCTTTTGGGCCTTTCSEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCCTTSGGGGSBTTT
T ss_pred             CCCCeeCcccCHHHcCcccCCEEECCcchhhhHHHHHHHHHHHhCeeEEEEeeeeeccCccccccCCCCCCcccccccee
Confidence            99999999999999997 78999999999999999999999999999999999999999999999998899999999999


Q ss_pred             ccccCCCchhhhhhhhccccCCceeEEEEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCccccccccceeee
Q psy6885         171 NIIPAATGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSS  250 (301)
Q Consensus       171 NIIP~~tG~ak~~~kvlpel~gkv~~~~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~VS~  250 (301)
                      ||||++||++|+++||+|+|+||++|+|+||||++||++||+++++|++++|||+++|++|++|+|||||+|+|+|+||+
T Consensus       209 NiIP~~tGaakavgkViPeL~gkltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~A~~g~lkgil~yte~~~VS~  288 (346)
T 3h9e_O          209 NIIPASTGAAKAVTKVIPELKGKLTGMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVST  288 (346)
T ss_dssp             CCEEECCHHHHHHHHHSGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGG
T ss_pred             eeecccCchHHhhheechhhcCcEEEEEEEcccccceeEEEEEEECCcCCHHHHHHHHHHhccCccCCceeEEcCCeEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccceEeeCCCCeeeeCCeEEEEEEecCCchhhhhHHHHHHHHhhc
Q psy6885         251 DFIGDTHSSIFDAQAGIPLNGKFVKLISWYDNEYGYSNRVVDLIKYIQTK  300 (301)
Q Consensus       251 D~~~~~~s~i~d~~~~~~~~~~~~kl~~WyDNE~gy~~r~~d~~~~~~~~  300 (301)
                      ||+|++||||||+.+|++++++++||++||||||||||||+||+.||+++
T Consensus       289 Df~~~~~ssi~d~~~~~~~~~~~vk~~~WYDNE~gys~r~~dl~~~~~~~  338 (346)
T 3h9e_O          289 DFLGDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYMFSR  338 (346)
T ss_dssp             GGTTCCCSEEEETTTCEEEETTEEEEEEEECTTHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCceeEcccccEEecCCEEEEEEEECCCcchHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999875
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O* Back     alignment and structure
>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O Back     alignment and structure
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis} Back     alignment and structure
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A* Back     alignment and structure
>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A* Back     alignment and structure
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O* Back     alignment and structure
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31} Back     alignment and structure
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A* Back     alignment and structure
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O* Back     alignment and structure
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus} Back     alignment and structure
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* Back     alignment and structure
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A Back     alignment and structure
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* Back     alignment and structure
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* Back     alignment and structure
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* Back     alignment and structure
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 Back     alignment and structure
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* Back     alignment and structure
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O Back     alignment and structure
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* Back     alignment and structure
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 Back     alignment and structure
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* Back     alignment and structure
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} Back     alignment and structure
>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} Back     alignment and structure
>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* Back     alignment and structure
>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 Back     alignment and structure
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* Back     alignment and structure
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 Back     alignment and structure
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 Back     alignment and structure
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 Back     alignment and structure
>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A Back     alignment and structure
>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} Back     alignment and structure
>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} Back     alignment and structure
>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A Back     alignment and structure
>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A Back     alignment and structure
>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* Back     alignment and structure
>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* Back     alignment and structure
>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A Back     alignment and structure
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} Back     alignment and structure
>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} Back     alignment and structure
>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} Back     alignment and structure
>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A Back     alignment and structure
>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A Back     alignment and structure
>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 Back     alignment and structure
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 301
d1u8fo2164 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate de 1e-91
d3cmco2163 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate de 3e-89
d1rm4a2163 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate de 2e-85
d1obfo2162 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate de 8e-82
d2g82a2162 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate de 4e-77
d1k3ta2169 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate de 3e-73
d1u8fo1169 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosp 2e-42
d1dssg1169 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosp 4e-42
d1rm4a1172 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosp 2e-39
d1hdgo1169 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosp 1e-36
d1b7go2162 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate de 3e-36
d1cf2o2165 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate de 2e-35
d1gado1166 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosp 1e-34
d1k3ta1190 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosp 2e-32
d1cf2o1171 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosp 4e-32
d3cmco1171 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosp 7e-32
d2b4ro1166 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosp 7e-29
d2czca2172 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosp 1e-27
d2g82a1168 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosp 2e-27
d1obfo1173 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosp 6e-27
d1b7go1178 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosp 4e-22
d2czca1162 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate de 1e-07
>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} Length = 164 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

 Score =  267 bits (684), Expect = 1e-91
 Identities = 139/164 (84%), Positives = 143/164 (87%)

Query: 118 CTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAAT 177
           CTTNCLAPLAKVIHDNF IVEGLMTTVHA TATQKTVDGPSGKLWRDGRGA QNIIPA+T
Sbjct: 1   CTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPAST 60

Query: 178 GAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLA 237
           GAAKAVGKVIP LNGKLTGMAFRVP ANVSVVDLT RL K A YD+IK  VK A+EGPL 
Sbjct: 61  GAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLK 120

Query: 238 GILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLISWYD 281
           GILGYTE +VVSSDF  DTHSS FDA AGI LN  FVKLISWYD
Sbjct: 121 GILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYD 164
>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Length = 163 Back     information, alignment and structure
>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 163 Back     information, alignment and structure
>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} Length = 162 Back     information, alignment and structure
>d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} Length = 162 Back     information, alignment and structure
>d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} Length = 169 Back     information, alignment and structure
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} Length = 169 Back     information, alignment and structure
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} Length = 169 Back     information, alignment and structure
>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 172 Back     information, alignment and structure
>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} Length = 169 Back     information, alignment and structure
>d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 162 Back     information, alignment and structure
>d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} Length = 165 Back     information, alignment and structure
>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} Length = 166 Back     information, alignment and structure
>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} Length = 190 Back     information, alignment and structure
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} Length = 171 Back     information, alignment and structure
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Length = 171 Back     information, alignment and structure
>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 166 Back     information, alignment and structure
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 172 Back     information, alignment and structure
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} Length = 168 Back     information, alignment and structure
>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} Length = 173 Back     information, alignment and structure
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 178 Back     information, alignment and structure
>d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 162 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query301
d3cmco2163 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 100.0
d1u8fo2164 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 100.0
d1rm4a2163 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 100.0
d2g82a2162 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 100.0
d1k3ta2169 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 100.0
d1obfo2162 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 100.0
d1dssg1169 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 100.0
d3cmco1171 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 100.0
d1gado1166 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 100.0
d1u8fo1169 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 100.0
d2g82a1168 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 100.0
d1rm4a1172 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 100.0
d1k3ta1190 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 100.0
d1hdgo1169 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 100.0
d2b4ro1166 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 100.0
d1obfo1173 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 100.0
d1cf2o2165 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 99.95
d1b7go2162 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 99.93
d1mb4a2222 Aspartate beta-semialdehyde dehydrogenase {Vibrio 99.92
d1b7go1178 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 99.92
d1t4ba2221 Aspartate beta-semialdehyde dehydrogenase {Escheri 99.91
d2hjsa2190 Usg-1 protein homolog PA3116 {Pseudomonas aerugino 99.9
d1cf2o1171 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 99.9
d2czca2172 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 99.88
d2gz1a2202 Aspartate beta-semialdehyde dehydrogenase {Strepto 99.86
d2czca1162 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { 99.72
d2gz1a1154 Aspartate beta-semialdehyde dehydrogenase {Strepto 99.48
d2hjsa1144 Usg-1 protein homolog PA3116 {Pseudomonas aerugino 99.37
d1nvmb1157 Acetaldehyde dehydrogenase (acylating) {Pseudomona 99.05
d1mb4a1147 Aspartate beta-semialdehyde dehydrogenase {Vibrio 98.83
d1t4ba1146 Aspartate beta-semialdehyde dehydrogenase {Escheri 98.6
d1vkna1176 N-acetyl-gamma-glutamyl-phosphate reductase ArgC { 98.39
d2cvoa1183 Putative semialdehyde dehydrogenase {Rice (Oryza s 98.38
d2g17a1179 N-acetyl-gamma-glutamyl-phosphate reductase ArgC { 98.08
d2g17a2155 N-acetyl-gamma-glutamyl-phosphate reductase ArgC { 96.9
d2cvoa2165 Putative semialdehyde dehydrogenase {Rice (Oryza s 95.89
d1vkna2163 N-acetyl-gamma-glutamyl-phosphate reductase ArgC { 91.86
>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=100.00  E-value=1.6e-63  Score=426.76  Aligned_cols=163  Identities=57%  Similarity=0.896  Sum_probs=161.7

Q ss_pred             cchhhccchhhhhhhccCeeEEEEeeeeccccccccccCCCCCCcccccccccccccCCCchhhhhhhhccccCCceeEE
Q psy6885         118 CTTNCLAPLAKVIHDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGM  197 (301)
Q Consensus       118 CtT~~Lap~lk~L~~~fgI~~~~~TT~ha~s~~q~~lD~~~~~d~r~~r~~a~NIIP~~tG~ak~~~kvlpel~gkv~~~  197 (301)
                      ||||||||++|+||++|||++++|||+||||++|+++|+++ +||||+|++++||||++||++|++++|||+|+||++|+
T Consensus         1 CTTNclaP~~kvl~~~fgI~~g~mTTvHa~T~~Q~l~D~~~-~d~Rr~Raa~~niIPtsTgAakav~~vlP~L~gkl~g~   79 (163)
T d3cmco2           1 CTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGM   79 (163)
T ss_dssp             HHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCC-SSTTTTSBTTTCCEEEECSHHHHHHHHCGGGTTTEEEE
T ss_pred             ChhHHHHHHHHHHHhhcCeeEEEEEeeccccCcccCCCCCC-cchhccchHhhCCCCccccHHHHHHHhhHHhCCCcceE
Confidence            99999999999999999999999999999999999999995 99999999999999999999999999999999999999


Q ss_pred             EEeeeeeeeeEeEEEEEecCCCCHHHHHHHHHHhhcCCCCccccccccceeeecCCCCccceEeeCCCCeeeeCCeEEEE
Q psy6885         198 AFRVPVANVSVVDLTVRLGKDATYDEIKAKVKAAAEGPLAGILGYTEDEVVSSDFIGDTHSSIFDAQAGIPLNGKFVKLI  277 (301)
Q Consensus       198 ~vRVPv~~gs~~dl~~~~~k~~~~eei~~~l~~a~~~~lkgil~~~e~~~VS~D~~~~~~s~i~d~~~~~~~~~~~~kl~  277 (301)
                      ++||||++||++||+++++|++++||||++|+++++++|||||+|+|+|+||+||+|++||+|||+.++.+++++++|++
T Consensus        80 a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~k~as~~~lkgil~~t~~plVSsDf~g~~~SsI~D~~~t~v~~~~~vKv~  159 (163)
T d3cmco2          80 AMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVV  159 (163)
T ss_dssp             EEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCSSEEEEGGGCEEETTTEEEEE
T ss_pred             EEecCCCcceeEEEEEEecCcCCHHHHHHHHHHHhcCCccCcceeeecccchhhccCCCccEEEEcccCEEECCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEec
Q psy6885         278 SWYD  281 (301)
Q Consensus       278 ~WyD  281 (301)
                      +|||
T Consensus       160 aWYD  163 (163)
T d3cmco2         160 SWYD  163 (163)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9998
>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} Back     information, alignment and structure
>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} Back     information, alignment and structure
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} Back     information, alignment and structure
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Back     information, alignment and structure
>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} Back     information, alignment and structure
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} Back     information, alignment and structure
>d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} Back     information, alignment and structure
>d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hjsa2 d.81.1.1 (A:130-319) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} Back     information, alignment and structure
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} Back     information, alignment and structure
>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2g17a2 d.81.1.1 (A:154-308) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2cvoa2 d.81.1.1 (A:219-383) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1vkna2 d.81.1.1 (A:145-307) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure