Psyllid ID: psy6898

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MGRVQGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGVLPSVQRAIAAGLVIYRFH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccc
Secondary Structure Prediction (SSPRO)
cccEEccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccEEEEEcc
Coil and Loop (DISEMBL)
MGRVQGMLQVLEVHDRRDIGRAISTVISgrigldgrdglpgepgldgipgrngmdgipgkdglpgkdgipgtngtktdhyamgadtksfsdgvlPSVQRAIAAGLVIYRFH
Flexible Loop (DISEMBL)
MGRVQGMLQVLEvhdrrdigrAISTvisgrigldgrdglpgePGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGVLPSVQRAIAAGLVIYRFH
Low Complexity Region (SEG)
MGRVQGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGVLPSVQRAIAAGLVIYRFH
Disordered region (IsUnstruct)
*******LQVLEVHDRRDIGRAISTVISGRIGL*********************************************************DGVLPSVQRAIAAGLVIYRF*
Disordered Region (DISOPRED)
********************************************************************************************************LVIYR**
Disordered Region (DISEMBL)
MGRVQGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGVLPSVQRAIAAGLVIYRFH
Disordered Region (DISPRO)
*GRVQGMLQVLEVHDRR**G**ISTV*********************************K*****KDGI**T****TDHYAMGADTKSFSDGVLPSVQRAIAAGLVIYRFH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRVQGMLQVLEVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFSDGVLPSVQRAIAAGLVIYRFH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
D8VNS9	347	Ryncolin-3 OS=Cerberus ry	N/A	N/A	0.432	0.138	0.529	1e-06
Q09457	948	Cuticle collagen bli-1 OS	yes	N/A	0.594	0.069	0.436	6e-06
P17140	1758	Collagen alpha-2(IV) chai	no	N/A	0.387	0.024	0.538	7e-06
P13941	1463	Collagen alpha-1(III) cha	yes	N/A	0.432	0.032	0.476	2e-05
D8VNS8	347	Ryncolin-2 OS=Cerberus ry	N/A	N/A	0.405	0.129	0.5	3e-05
P02461	1466	Collagen alpha-1(III) cha	yes	N/A	0.513	0.038	0.430	4e-05
Q30D77	1733	Collagen alpha-1(XXIV) ch	yes	N/A	0.405	0.025	0.541	5e-05
A6NMZ7	2263	Collagen alpha-6(VI) chai	no	N/A	0.432	0.021	0.510	7e-05
P27393	1763	Collagen alpha-2(IV) chai	N/A	N/A	0.441	0.027	0.545	8e-05
P04258	1049	Collagen alpha-1(III) cha	no	N/A	0.369	0.039	0.5	8e-05

>sp|D8VNS9|FCNV3_CERRY Ryncolin-3 OS=Cerberus rynchops PE=1 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPGTNG 74
          IS +I L G+ G+PG PG+ GI G  G+ G PG  GLPG+   DGIPG  G
Sbjct: 43 ISDKIILQGQPGIPGIPGVPGINGSEGLKGDPGPQGLPGETGFDGIPGVAG 93

Initiates complement activation and/or interferes in platelet aggregation and/or blood coagulation.
Cerberus rynchops (taxid: 46267)

>sp|Q09457|BLI1_CAEEL Cuticle collagen bli-1 OS=Caenorhabditis elegans GN=bli-1 PE=3 SV=2

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 27  ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG-----IPGTNGTKTDHYA 81
           I G  G++G+DG PG PG  G  G NG  G PGK GLPG++G     IPG  G       
Sbjct: 445 IDGEQGVNGQDGQPGAPGAPGYHGMNGSPGTPGKPGLPGRNGQSCKSIPGPPGQPGVMGV 504

Query: 82  MGADTKSFSDG 92
            G D    +DG
Sbjct: 505 PGRDGDPGTDG 515

Nematode cuticles are composed largely of collagen-like proteins. The cuticle functions both as an exoskeleton and as a barrier to protect the worm from its environment. This collagen is required for proper strut formation within the unique medial layer of the adult cuticle.

Caenorhabditis elegans (taxid: 6239)

>sp|P17140|CO4A2_CAEEL Collagen alpha-2(IV) chain OS=Caenorhabditis elegans GN=let-2 PE=1 SV=2

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 33/52 (63%)

Query: 27   ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
            I G+ G  G  G PG+ GL G PG  G  G PG+DGLPG+DG+PG  G K D
Sbjct: 1084 IPGKAGRQGAPGSPGQDGLPGFPGMKGESGYPGQDGLPGRDGLPGVPGQKGD 1135

Collagen type IV is specific for basement membranes. Vital for embryonic development.

Caenorhabditis elegans (taxid: 6239)

>sp|P13941|CO3A1_RAT Collagen alpha-1(III) chain OS=Rattus norvegicus GN=Col3a1 PE=2 SV=3

 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 35/63 (55%)

Query: 12  EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
           E   R + G A S  I G  G DG+DG PGEPG +G+PG  G  G PG  G  G +G PG
Sbjct: 441 EPGARGERGEAGSPGIPGPKGEDGKDGSPGEPGANGVPGNPGERGAPGFRGPAGPNGAPG 500

Query: 72  TNG 74
             G
Sbjct: 501 EKG 503

Collagen type III occurs in most soft connective tissues along with type I collagen.

Rattus norvegicus (taxid: 10116)

>sp|D8VNS8|FCNV2_CERRY Ryncolin-2 OS=Cerberus rynchops PE=1 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 30 RIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGK---DGIPGTNG 74
          +I L  + G+PG PG+ GI G  G+ G PG  GLPG+   DGIPG  G
Sbjct: 46 KIILQSQPGIPGIPGVPGINGSEGLKGDPGPQGLPGETGFDGIPGVAG 93

Initiates complement activation and/or interferes in platelet aggregation and/or blood coagulation.

Cerberus rynchops (taxid: 46267)

>sp|P02461|CO3A1_HUMAN Collagen alpha-1(III) chain OS=Homo sapiens GN=COL3A1 PE=1 SV=4

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 38/72 (52%)

Query: 12  EVHDRRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
           E   R + G A    + G  G DG+DG PGEPG +G+PG  G  G PG  G  G +GIPG
Sbjct: 442 EPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPG 501

Query: 72  TNGTKTDHYAMG 83
             G   +  A G
Sbjct: 502 EKGPAGERGAPG 513

Collagen type III occurs in most soft connective tissues along with type I collagen.

Homo sapiens (taxid: 9606)

>sp|Q30D77|COOA1_MOUSE Collagen alpha-1(XXIV) chain OS=Mus musculus GN=Col24a1 PE=2 SV=2

 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 31/48 (64%)

Query: 28   SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
            SG+ G+ G  G PG  GL G PG +GM G PGK GLPGK G+ G  G+
Sbjct: 1294 SGKPGIPGVPGFPGPKGLQGYPGVDGMSGYPGKPGLPGKQGLLGVPGS 1341

Involved in osteoblast differentiation.

Mus musculus (taxid: 10090)

>sp|A6NMZ7|CO6A6_HUMAN Collagen alpha-6(VI) chain OS=Homo sapiens GN=COL6A6 PE=1 SV=2

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 29/49 (59%)

Query: 28   SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
             G +G +G DGL GE G +G+PGR G  G  G  G PGK G PG  G K
Sbjct: 1457 EGEVGENGIDGLNGEQGDNGLPGRKGEKGDEGSQGSPGKRGTPGDRGAK 1505

Collagen VI acts as a cell-binding protein.

Homo sapiens (taxid: 9606)

>sp|P27393|CO4A2_ASCSU Collagen alpha-2(IV) chain OS=Ascaris suum PE=2 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 33/55 (60%)

Query: 20   GRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
            G A +  I G  GL G  G  GEPGL GIPG+ G DGIPGK G  G  G+PG  G
Sbjct: 1303 GYAGAAGIKGEPGLPGIPGAKGEPGLSGIPGKRGNDGIPGKPGPAGLPGLPGMKG 1357

Collagen type IV is specific for basement membranes.

Ascaris suum (taxid: 6253)

>sp|P04258|CO3A1_BOVIN Collagen alpha-1(III) chain OS=Bos taurus GN=COL3A1 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 36/56 (64%)

Query: 16  RRDIGRAISTVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPG 71
           R + G A S  I+G  G DG+DG PGEPG +G+PG  G  G+PG  G  G +G+PG
Sbjct: 290 RGERGEAGSPGIAGPKGEDGKDGSPGEPGANGLPGAAGERGVPGFRGPAGANGLPG 345

Collagen type III occurs in most soft connective tissues along with type I collagen.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
332020940	1273	Olfactomedin-like protein 2A [Acromyrmex	0.576	0.050	0.552	1e-13
91085657	879	PREDICTED: similar to colmedin [Triboliu	0.369	0.046	0.744	5e-13
158294873	828	AGAP005849-PA [Anopheles gambiae str. PE	0.387	0.051	0.760	4e-12
328793176	818	PREDICTED: hypothetical protein LOC72556	0.090	0.012	0.673	7e-12
383858047	829	PREDICTED: uncharacterized protein LOC10	0.063	0.008	0.673	1e-11
157109031	793	colmedin [Aedes aegypti] gi|108879145|gb	0.387	0.054	0.739	2e-11
357619457	722	colmedin [Danaus plexippus]	0.432	0.066	0.705	3e-11
357612436	624	colmedin [Danaus plexippus]	0.432	0.076	0.705	3e-11
328713370	838	PREDICTED: hypothetical protein LOC10015	0.450	0.059	0.634	3e-11
242016912	132	collagen alpha chain, type IV, putative	0.504	0.424	0.655	8e-11

>gi|332020940|gb|EGI61334.1| Olfactomedin-like protein 2A [Acromyrmex echinatior]

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/67 (55%), Positives = 45/67 (67%), Gaps = 3/67 (4%)

Query: 29  GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGT---NGTKTDHYAMGAD 85
           G  G DGRDG+PGEPGLDGIPGR+G+DG+PG +G PG +G+PG+   NGT      MG  
Sbjct: 608 GPPGFDGRDGVPGEPGLDGIPGRSGLDGVPGSNGKPGANGLPGSPGRNGTDGRPGQMGPQ 667

Query: 86  TKSFSDG 92
               S G
Sbjct: 668 GPPGSRG 674

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91085657|ref|XP_971289.1| PREDICTED: similar to colmedin [Tribolium castaneum]

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/47 (74%), Positives = 38/47 (80%)

Query: 29  GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
           GR GLDGRDG+PGEPGLDG+PGRNG DGIPG +G PG  G  G NGT
Sbjct: 221 GRPGLDGRDGIPGEPGLDGMPGRNGYDGIPGVNGRPGLPGRDGRNGT 267

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158294873|ref|XP_315876.4| AGAP005849-PA [Anopheles gambiae str. PEST] gi|157015767|gb|EAA11951.4| AGAP005849-PA [Anopheles gambiae str. PEST]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/46 (76%), Positives = 38/46 (82%), Gaps = 3/46 (6%)

Query: 29  GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
           G  GLDGRDG+PGEPGLDG+PGR G DGIPGKD   GKDGIPG +G
Sbjct: 155 GNPGLDGRDGVPGEPGLDGVPGRAGADGIPGKD---GKDGIPGIDG 197

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793176|ref|XP_001121395.2| PREDICTED: hypothetical protein LOC725563 [Apis mellifera]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/46 (67%), Positives = 37/46 (80%)

Query: 29  GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
           G  G DGRDG+PGEPGLDGIPGR+G+DG+PG +G PG +G PG  G
Sbjct: 188 GPSGFDGRDGIPGEPGLDGIPGRSGLDGLPGINGKPGLNGSPGRPG 233

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858047|ref|XP_003704514.1| PREDICTED: uncharacterized protein LOC100878969 [Megachile rotundata]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/46 (67%), Positives = 37/46 (80%)

Query: 29  GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
           G  G DGRDG+PGEPGLDGIPGR+G+DG+PG +G PG +G PG  G
Sbjct: 192 GPSGFDGRDGVPGEPGLDGIPGRSGLDGLPGINGKPGLNGSPGRPG 237

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157109031|ref|XP_001650493.1| colmedin [Aedes aegypti] gi|108879145|gb|EAT43370.1| AAEL005189-PA, partial [Aedes aegypti]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)

Query: 29  GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
           G  GLDGRDG+PGEPGLDG+PGR G DGIPG+D   GKDG PG NG
Sbjct: 117 GNPGLDGRDGVPGEPGLDGVPGRAGADGIPGRD---GKDGTPGING 159

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357619457|gb|EHJ72021.1| colmedin [Danaus plexippus]

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 41/51 (80%), Gaps = 3/51 (5%)

Query: 27  ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGTNG 74
             G  GLDGRDG+PGEPGLDG+PGRNG DG PG+   DG+PG+DGIPG NG
Sbjct: 102 FPGNPGLDGRDGVPGEPGLDGLPGRNGADGAPGRYGQDGIPGRDGIPGKNG 152

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357612436|gb|EHJ68002.1| colmedin [Danaus plexippus]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 41/51 (80%), Gaps = 3/51 (5%)

Query: 27  ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGK---DGLPGKDGIPGTNG 74
             G  GLDGRDG+PGEPGLDG+PGRNG DG PG+   DG+PG+DGIPG NG
Sbjct: 215 FPGNPGLDGRDGVPGEPGLDGLPGRNGADGAPGRYGQDGIPGRDGIPGKNG 265

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328713370|ref|XP_001950725.2| PREDICTED: hypothetical protein LOC100159502 [Acyrthosiphon pisum]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/52 (63%), Positives = 39/52 (75%), Gaps = 2/52 (3%)

Query: 25  TVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDG--IPGTNG 74
           T   G  GLDGRDG+PGEPGLDG+PG+ G+DG PG +GLPGKD     GT+G
Sbjct: 177 TGFPGAPGLDGRDGIPGEPGLDGMPGKYGLDGFPGTNGLPGKDATCFNGTDG 228

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242016912|ref|XP_002428939.1| collagen alpha chain, type IV, putative [Pediculus humanus corporis] gi|212513762|gb|EEB16201.1| collagen alpha chain, type IV, putative [Pediculus humanus corporis]

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 46/58 (79%), Gaps = 2/58 (3%)

Query: 24  STVISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT--KTDH 79
           +T   G  GLDGRDG+PGEPGLDGIPGR+G+DG+PG DGLPG  G PG NGT  +++H
Sbjct: 73  TTGWPGAPGLDGRDGVPGEPGLDGIPGRSGLDGLPGMDGLPGMHGAPGFNGTDGESNH 130

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
WB|WBGene00000711	281	col-138 [Caenorhabditis elegan	0.459	0.181	0.547	8e-10
WB|WBGene00002280	1758	let-2 [Caenorhabditis elegans	0.468	0.029	0.538	1e-09
UNIPROTKB|P17140	1758	let-2 "Collagen alpha-2(IV) ch	0.468	0.029	0.538	1e-09
WB|WBGene00000696	300	col-122 [Caenorhabditis elegan	0.585	0.216	0.454	1.3e-09
UNIPROTKB|P02462	1669	COL4A1 "Collagen alpha-1(IV) c	0.504	0.033	0.517	2.5e-09
UNIPROTKB|F1RLM1	1625	COL4A1 "Uncharacterized protei	0.504	0.034	0.517	3.1e-09
WB|WBGene00000693	289	col-119 [Caenorhabditis elegan	0.576	0.221	0.446	3.2e-09
UNIPROTKB|F1KQQ4	1759	F1KQQ4 "Collagen alpha-1(IV) c	0.630	0.039	0.478	3.4e-09
UNIPROTKB|F1Q133	1623	COL4A1 "Uncharacterized protei	0.504	0.034	0.517	4e-09
UNIPROTKB|F1P2R3	1669	COL4A1 "Uncharacterized protei	0.504	0.033	0.517	4.1e-09

WB|WBGene00000711 col-138 [Caenorhabditis elegans (taxid:6239)]

 Score = 145 (56.1 bits), Expect = 8.0e-10, P = 8.0e-10
 Identities = 29/53 (54%), Positives = 33/53 (62%)

Query:    29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK--TDH 79
             G  G DGR G PG  G  G PG+NG DG PGKDG+ G+ G PG +G K   DH
Sbjct:   219 GEAGQDGRPGQPGRQGPQGEPGQNGKDGEPGKDGVDGEPGKPGEDGPKGSCDH 271

GO:0042302 "structural constituent of cuticle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00002280 let-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 156 (60.0 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 28/52 (53%), Positives = 33/52 (63%)

Query:    27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
             I G+ G  G  G PG+ GL G PG  G  G PG+DGLPG+DG+PG  G K D
Sbjct:  1084 IPGKAGRQGAPGSPGQDGLPGFPGMKGESGYPGQDGLPGRDGLPGVPGQKGD 1135

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

GO:0005581 "collagen" evidence=IEA

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040039 "inductive cell migration" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0005604 "basement membrane" evidence=IDA

GO:0005198 "structural molecule activity" evidence=IDA

UNIPROTKB|P17140 let-2 "Collagen alpha-2(IV) chain" [Caenorhabditis elegans (taxid:6239)]

 Score = 156 (60.0 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 28/52 (53%), Positives = 33/52 (63%)

Query:    27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTD 78
             I G+ G  G  G PG+ GL G PG  G  G PG+DGLPG+DG+PG  G K D
Sbjct:  1084 IPGKAGRQGAPGSPGQDGLPGFPGMKGESGYPGQDGLPGRDGLPGVPGQKGD 1135

GO:0016043 "cellular component organization" evidence=NAS

GO:0030020 "extracellular matrix structural constituent conferring tensile strength" evidence=IMP

GO:0005587 "collagen type IV" evidence=IMP

WB|WBGene00000696 col-122 [Caenorhabditis elegans (taxid:6239)]

 Score = 144 (55.7 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 30/66 (45%), Positives = 36/66 (54%)

Query:    27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
             ++G  G DG  G PG+PG  G PG  G DG PG+ GLPG DG PG  G    + A+    
Sbjct:   233 VAGIKGKDGAPGSPGQPGPRGGPGEPGQDGAPGQPGLPGSDGTPGEKGICPKYCAIDGGV 292

Query:    87 KSFSDG 92
               F DG
Sbjct:   293 -FFEDG 297

GO:0042302 "structural constituent of cuticle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

UNIPROTKB|P02462 COL4A1 "Collagen alpha-1(IV) chain" [Homo sapiens (taxid:9606)]

 Score = 152 (58.6 bits), Expect = 2.5e-09, P = 2.5e-09
 Identities = 29/56 (51%), Positives = 34/56 (60%)

Query:    28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
             +G  GL G  G  G PG  G PG  G+ GIPG+DG PG  GIPG NGTK +   +G
Sbjct:    81 TGEPGLPGTKGTRGPPGASGYPGNPGLPGIPGQDGPPGPPGIPGCNGTKGERGPLG 136

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0005587 "collagen type IV" evidence=IEA

GO:0007528 "neuromuscular junction development" evidence=IEA

GO:0071230 "cellular response to amino acid stimulus" evidence=IEA

GO:0005576 "extracellular region" evidence=NAS;TAS

GO:0048407 "platelet-derived growth factor binding" evidence=IDA

GO:0005788 "endoplasmic reticulum lumen" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0030198 "extracellular matrix organization" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0031012 "extracellular matrix" evidence=ISS

UNIPROTKB|F1RLM1 COL4A1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 151 (58.2 bits), Expect = 3.1e-09, P = 3.1e-09
 Identities = 29/56 (51%), Positives = 34/56 (60%)

Query:    28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
             +G  GL G  G  G PG  G PG  G+ GIPG+DG PG  GIPG NGTK +   +G
Sbjct:    34 TGEPGLPGTKGTRGPPGASGYPGNPGLPGIPGQDGPPGPPGIPGCNGTKGERGPVG 89

GO:0071230 "cellular response to amino acid stimulus" evidence=IEA

GO:0048407 "platelet-derived growth factor binding" evidence=IEA

GO:0007528 "neuromuscular junction development" evidence=IEA

GO:0005587 "collagen type IV" evidence=IEA

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

WB|WBGene00000693 col-119 [Caenorhabditis elegans (taxid:6239)]

 Score = 140 (54.3 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 29/65 (44%), Positives = 37/65 (56%)

Query:    28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTK 87
             +G+ G DG  G PGE G +G PG+ G DG PG+ G PG+DG PG  G    + A+     
Sbjct:   223 AGQPGKDGAQGGPGEKGANGEPGQPGRDGQPGRPGQPGRDGHPGEKGVCPKYCALDGGV- 281

Query:    88 SFSDG 92
              F DG
Sbjct:   282 FFEDG 286

GO:0042302 "structural constituent of cuticle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019915 "lipid storage" evidence=IMP

UNIPROTKB|F1KQQ4 F1KQQ4 "Collagen alpha-1(IV) chain" [Ascaris suum (taxid:6253)]

 Score = 151 (58.2 bits), Expect = 3.4e-09, P = 3.4e-09
 Identities = 34/71 (47%), Positives = 39/71 (54%)

Query:    27 ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADT 86
             I G+ G DG  GLPG PGLDG PG  G  G+ G  G PGKDGIPG  G + +    G   
Sbjct:  1329 IDGKRGPDGARGLPGPPGLDGYPGAPGERGMDGLPGFPGKDGIPGYPGERGEVGLPGLPG 1388

Query:    87 KSFSDGVLPSV 97
                 DG LP +
Sbjct:  1389 MRGEDG-LPGL 1398

GO:0031012 "extracellular matrix" evidence=IDA

UNIPROTKB|F1Q133 COL4A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 150 (57.9 bits), Expect = 4.0e-09, P = 4.0e-09
 Identities = 29/56 (51%), Positives = 34/56 (60%)

Query:    28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
             +G  GL G  G  G PG  G PG  G+ GIPG+DG PG  GIPG NGTK +   +G
Sbjct:    34 TGEPGLPGTKGTRGPPGASGYPGNPGLPGIPGQDGPPGPPGIPGCNGTKGEPGPLG 89

GO:0005581 "collagen" evidence=IEA

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

UNIPROTKB|F1P2R3 COL4A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 150 (57.9 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 29/56 (51%), Positives = 34/56 (60%)

Query:    28 SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
             +G  GL G  G  G PG  G PG  G+ GIPG+DG PG  GIPG NGTK +   +G
Sbjct:    71 TGEPGLPGTKGTRGPPGPSGFPGNPGLPGIPGQDGPPGPPGIPGCNGTKGERGPVG 126

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

GO:0005587 "collagen type IV" evidence=IEA

GO:0007528 "neuromuscular junction development" evidence=IEA

GO:0048407 "platelet-derived growth factor binding" evidence=IEA

GO:0071230 "cellular response to amino acid stimulus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q30D77	COOA1_MOUSE	No assigned EC number	0.5416	0.4054	0.0259	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	111
pfam01391	60	pfam01391, Collagen, Collagen triple helix repeat	0.002
pfam01391	60	pfam01391, Collagen, Collagen triple helix repeat	0.003
pfam01391	60	pfam01391, Collagen, Collagen triple helix repeat	0.003

>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies)

 Score = 33.6 bits (78), Expect = 0.002
 Identities = 22/46 (47%), Positives = 22/46 (47%)

Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
          G  G  G  G PG PG  G PG  G  G PG  G PG  G PG  G
Sbjct: 7  GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPG 52

Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxyproline. Collagens are post translationally modified by proline hydroxylase to form the hydroxyproline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. Length = 60

>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies)

 Score = 33.2 bits (77), Expect = 0.003
 Identities = 22/46 (47%), Positives = 22/46 (47%)

Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
          G  G  G  G PG PG  G PG  G  G PG  G PG  G PG  G
Sbjct: 13 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGAPGAPG 58

Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxyproline. Collagens are post translationally modified by proline hydroxylase to form the hydroxyproline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. Length = 60

>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies)

 Score = 33.2 bits (77), Expect = 0.003
 Identities = 22/48 (45%), Positives = 22/48 (45%)

Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
          G  G  G  G PG PG  G PG  G  G PG  G PG  G PG  G  
Sbjct: 1  GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGPP 48

Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxyproline. Collagens are post translationally modified by proline hydroxylase to form the hydroxyproline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
KOG3546|consensus	1167		98.74

>KOG3546|consensus

Probab=98.74  E-value=7.6e-08  Score=79.87  Aligned_cols=11  Identities=9%  Similarity=-0.179  Sum_probs=4.1

Q ss_pred             CCCCCCCCCCC
Q psy6898          80 YAMGADTKSFS   90 (111)
Q Consensus        80 G~~G~~g~~g~   90 (111)
                      |.++.+++++.
T Consensus       525 gppgppgppgp  535 (1167)
T KOG3546|consen  525 GPPGPPGPPGP  535 (1167)
T ss_pred             CCCCCCCCCCC
Confidence            33333333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	111
2pne_A	81	6.5 kDa glycine-rich antifreeze protein; chemical	9e-06
2pne_A	81	6.5 kDa glycine-rich antifreeze protein; chemical	6e-05
2pne_A	81	6.5 kDa glycine-rich antifreeze protein; chemical	2e-04
1o91_A	178	Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, ext	2e-04
1o91_A	178	Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, ext	3e-04
1o91_A	178	Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, ext	4e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	8e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	9e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	9e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-04
4auo_C	40	Triple-helical collagen peptide; hydrolase-peptide	8e-04

>2pne_A 6.5 kDa glycine-rich antifreeze protein; chemical protein synthesis, native chemical ligation; 0.98A {Synthetic} PDB: 3boi_A 3bog_A* 3bog_C* Length = 81

 Score = 39.7 bits (93), Expect = 9e-06
 Identities = 18/47 (38%), Positives = 22/47 (46%)

Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGT 75
          G  G++G  G  G  G  G PG +G  G  G +G PG  G  G  G 
Sbjct: 6  GAHGVNGCPGTAGAAGSVGGPGCDGGHGGNGGNGNPGCAGGVGGAGG 52

>2pne_A 6.5 kDa glycine-rich antifreeze protein; chemical protein synthesis, native chemical ligation; 0.98A {Synthetic} PDB: 3boi_A 3bog_A* 3bog_C* Length = 81

 Score = 37.3 bits (87), Expect = 6e-05
 Identities = 18/49 (36%), Positives = 19/49 (38%)

Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
          G DG  G  G  G  G  G  G PG DG  G +G  G  G        G
Sbjct: 3  GADGAHGVNGCPGTAGAAGSVGGPGCDGGHGGNGGNGNPGCAGGVGGAG 51

>2pne_A 6.5 kDa glycine-rich antifreeze protein; chemical protein synthesis, native chemical ligation; 0.98A {Synthetic} PDB: 3boi_A 3bog_A* 3bog_C* Length = 81

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 18/46 (39%), Positives = 20/46 (43%)

Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
          G  G  G +G PG  G  G  G  G DG  G +G  G  G  G  G
Sbjct: 3  GADGAHGVNGCPGTAGAAGSVGGPGCDGGHGGNGGNGNPGCAGGVG 48

>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1 Length = 178

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 8/49 (16%), Positives = 11/49 (22%)

Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
              +   P   G    +   GI G        G  G +G         
Sbjct: 4  HHHAVMPTPSPQGEYLPDMGLGIDGVKTPHAYAGKKGKHGGPAYEMPAF 52

>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1 Length = 178

 Score = 36.9 bits (85), Expect = 3e-04
 Identities = 8/51 (15%), Positives = 13/51 (25%)

Query: 40 PGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMGADTKSFS 90
               +   P   G        G+ G        G K  H     +  +F+
Sbjct: 3  HHHHAVMPTPSPQGEYLPDMGLGIDGVKTPHAYAGKKGKHGGPAYEMPAFT 53

>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1 Length = 178

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 9/49 (18%), Positives = 13/49 (26%)

Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTKTDHYAMG 83
               P   G        G+DG+       GK G  G    +   +   
Sbjct: 7  AVMPTPSPQGEYLPDMGLGIDGVKTPHAYAGKKGKHGGPAYEMPAFTAE 55

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 22/48 (45%), Positives = 27/48 (56%)

Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
          G  G  G+ G  G  G  G PG+ G DG PGK G PG+ G+PG  G +
Sbjct: 37 GEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVPGPQGAR 84

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 21/48 (43%), Positives = 26/48 (54%)

Query: 29  GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
           G  G  G +GLPG  G  G+PG  G  G+PG  G+PG  G  G  G +
Sbjct: 214 GPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGAR 261

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 21/49 (42%), Positives = 24/49 (48%)

Query: 28  SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
            G  GL G  G PG  G +G+PG  G  G+PG  G PG  G  G  G  
Sbjct: 204 VGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPV 252

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 37.0 bits (86), Expect = 5e-04
 Identities = 21/48 (43%), Positives = 23/48 (47%)

Query: 29  GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
           G  G  G  G  G  GL G  G  G+ G+ G  GLPG  GIPG  G  
Sbjct: 208 GLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAA 255

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 37.0 bits (86), Expect = 5e-04
 Identities = 21/48 (43%), Positives = 23/48 (47%)

Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
          G  G  G  G PG+ G  G  G  G  G  G+DG PGK G PG  G  
Sbjct: 31 GFQGPPGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVP 78

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 20/46 (43%), Positives = 23/46 (50%)

Query: 29  GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
           G  G  G  GLPG  G  G PG  G +G+PG  G  G  G+ G  G
Sbjct: 196 GPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPG 241

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 19/48 (39%), Positives = 21/48 (43%)

Query: 29  GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
           G  G  G  G+ GE G  G  G +G  G  G  G PG  G  GT G  
Sbjct: 619 GPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPV 666

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 20/48 (41%), Positives = 22/48 (45%)

Query: 29  GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
           G  G  G  G  GE G  G PG  G  G PG  GL G  G  G  G++
Sbjct: 751 GETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSR 798

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 25/46 (54%), Positives = 27/46 (58%)

Query: 29  GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
           G+ G DG  G PG PG  G+PG  G  G PG  GLPG  GI G NG
Sbjct: 58  GKAGEDGHPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNG 103

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 36.6 bits (85), Expect = 8e-04
 Identities = 21/49 (42%), Positives = 25/49 (51%)

Query: 28  SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
           SG  G+ G DG PG+ G  GI G  G +G+ G  GL G  G  G  G  
Sbjct: 915 SGPQGIRGDDGEPGDKGDKGIKGDRGHNGLQGLPGLAGHHGDQGAPGAV 963

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 36.2 bits (84), Expect = 9e-04
 Identities = 20/48 (41%), Positives = 22/48 (45%)

Query: 29  GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
           G  G  GRDG  G PG  G PG  G  G  G+ G  G  G  G  G +
Sbjct: 583 GDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIR 630

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 36.2 bits (84), Expect = 9e-04
 Identities = 20/48 (41%), Positives = 21/48 (43%)

Query: 29  GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
           G  G+DGR G  G  G  G  G  G  G  G  G PGK G  G  G  
Sbjct: 388 GLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLA 435

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 21/48 (43%), Positives = 23/48 (47%)

Query: 29  GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
           G  G  G  G PGE G  G  G  G DG+ G  G  G+ G PG  G K
Sbjct: 311 GEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPK 358

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 23/48 (47%), Positives = 26/48 (54%)

Query: 29  GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
           G+ G DG  G PG PG  G PG  G  G+PG  GLPG  G  G +G  
Sbjct: 65  GKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLD 112

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 21/49 (42%), Positives = 23/49 (46%)

Query: 28   SGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
            +G  G DG +GLPG  G  G  GR G  G  G  G PG  G PG     
Sbjct: 985  AGSPGKDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPGPPGPPGPPSGG 1033

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 37.0 bits (86), Expect = 5e-04
 Identities = 21/48 (43%), Positives = 21/48 (43%)

Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
          G  GL G  G PG  G  G PG  G  G  G  G  G  G PG NG  
Sbjct: 23 GPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDD 70

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 37.0 bits (86), Expect = 5e-04
 Identities = 16/48 (33%), Positives = 18/48 (37%)

Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
             G D +      PG  G  G  G+ G PG  G  G  G PG  G  
Sbjct: 2  MSYGYDEKSTGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEP 49

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 37.0 bits (86), Expect = 5e-04
 Identities = 22/48 (45%), Positives = 25/48 (52%)

Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
          G  G  G  G  G  G  G PG+NG DG  GK G PG+ G PG  G +
Sbjct: 44 GEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGAR 91

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 37.0 bits (86), Expect = 5e-04
 Identities = 21/48 (43%), Positives = 25/48 (52%)

Query: 29  GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
           G  G  G++G  GE G  G PG  G  G  G  GLPG  G+PG  G +
Sbjct: 59  GPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHR 106

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 37.0 bits (86), Expect = 5e-04
 Identities = 24/50 (48%), Positives = 29/50 (58%)

Query: 27  ISGRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
            SG  G  G  G  G PGL G PG +G +G PG +G PG+DG PG  G +
Sbjct: 825 PSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDR 874

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 21/48 (43%), Positives = 23/48 (47%)

Query: 29  GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
           G  G  G DG PG  G +G PG  G  G PG  G  G +G  G  G K
Sbjct: 221 GPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPK 268

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 22/48 (45%), Positives = 26/48 (54%)

Query: 29  GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
           G  G +G+ G  GEPG  G+PG  G  G PG  G PG DG+ G  G  
Sbjct: 299 GPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPA 346

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 21/48 (43%), Positives = 21/48 (43%)

Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
          G  G  G  G PGEPG  G  G  G  G PG  G  G DG  G  G  
Sbjct: 32 GAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRP 79

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 20/48 (41%), Positives = 21/48 (43%)

Query: 29  GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
           G  G  G  G  G+ G  G PGR G  G PG  G  G  G  G  G K
Sbjct: 56  GPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMK 103

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 36.2 bits (84), Expect = 8e-04
 Identities = 22/48 (45%), Positives = 25/48 (52%)

Query: 29 GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
          G  G  G  G PGEPG  G  G  G  G PGK+G  G+ G PG  G +
Sbjct: 35 GPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGER 82

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 36.2 bits (84), Expect = 8e-04
 Identities = 20/48 (41%), Positives = 24/48 (50%)

Query: 29   GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
            G  G  G  G PG+ GL+G+PG  G  G  G+ G  G  G PG  G  
Sbjct: 977  GPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPGPP 1024

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 36.2 bits (84), Expect = 9e-04
 Identities = 19/48 (39%), Positives = 21/48 (43%)

Query: 29  GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNGTK 76
           G  G  G  G  G+ G  G PG  G+ G PG  G  GK G  G  G  
Sbjct: 269 GNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPS 316

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 36.2 bits (84), Expect = 9e-04
 Identities = 20/46 (43%), Positives = 23/46 (50%)

Query: 29  GRIGLDGRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
           G  G  G +G PG+ G  G+PG  G  G PG  G  G DG  G  G
Sbjct: 125 GEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAG 170

>4auo_C Triple-helical collagen peptide; hydrolase-peptide complex; 3.00A {Synthetic construct} Length = 40

 Score = 33.7 bits (77), Expect = 8e-04
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query: 35 GRDGLPGEPGLDGIPGRNGMDGIPGKDGLPGKDGIPGTNG 74
          G  G PG PG  G+ G+ G+ G+PG+ G  G  G PG  G
Sbjct: 1  GPPGPPGPPGPQGLAGQRGIVGLPGQRGERGPPGPPGPPG 40

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00