Psyllid ID: psy6945

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-
Protein Sequence
VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSEDIMPYTNYTYV
Secondary Structure (PSIPRED)
cEEEcccccccccccccccccccHHHHHHHcccccccEEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEHHHcccccccccccHHHccccHHHHHccccccccEEEcccEHHHHccccccccccEEEc
Coil and Loop (DISEMBL)
vieflstgrvtsdhqdfkdlpyKSVLNKIcqndksndfthSFKLAsaysedimpytnytyv
Flexible Loop (DISEMBL)
vieflstgrvtsdhqdfkdlpyKSVLNKICQNDKSNDFTHSFKlasaysedimpytnytyv
Low Complexity Region (SEG)
VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSEDIMPYTNYTYV
Disordered region (IsUnstruct)
*****************KDLPYKSVLNKICQNDKSNDFTHSFKLASAYSEDIMPYTNY***
Disordered Region (DISOPRED)
VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSEDIMPYTNYTYV
Disordered Region (DISEMBL)
VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSEDIMPYTNYTYV
Disordered Region (DISPRO)
VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSEDIMPYTNYTYV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSEDIMPYTNYTYV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	61	2.2.26 [Sep-21-2011]
Q6AXU9	557	CCR4-NOT transcription co	yes	N/A	0.983	0.107	0.484	5e-10
Q8K3P5	557	CCR4-NOT transcription co	yes	N/A	0.983	0.107	0.484	5e-10
A2BHJ4	559	CCR4-NOT transcription co	yes	N/A	0.983	0.107	0.484	6e-10
Q5BJ41	552	CCR4-NOT transcription co	N/A	N/A	0.983	0.108	0.484	6e-10
Q9ULM6	557	CCR4-NOT transcription co	yes	N/A	0.983	0.107	0.515	9e-10
Q96LI5	555	CCR4-NOT transcription co	no	N/A	0.983	0.108	0.453	4e-09
Q5XH73	550	CCR4-NOT transcription co	N/A	N/A	0.983	0.109	0.437	9e-09
Q6IR85	550	CCR4-NOT transcription co	N/A	N/A	0.983	0.109	0.437	2e-08
Q8VEG6	555	CCR4-NOT transcription co	no	N/A	0.983	0.108	0.437	2e-08

>sp|Q6AXU9|CNOT6_RAT CCR4-NOT transcription complex subunit 6 OS=Rattus norvegicus GN=Cnot6 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 4/64 (6%)

Query: 1   VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSN----DFTHSFKLASAYSEDIMPYT 56
           V+E+LSTG V ++H+DFK+L Y   L     N K+       TH FKL SAY   +MPYT
Sbjct: 421 VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGMTNGRITHGFKLKSAYENGLMPYT 480

Query: 57  NYTY 60
           NYT+
Sbjct: 481 NYTF 484

Poly(A) nuclease involved in mRNA decay mediated by the major-protein-coding determinant of instability (mCRD) of the FOS gene in the cytoplasm. Has 3'-5' RNase activity. The CCR4-NOT complex functions as general transcription regulation complex.
Rattus norvegicus (taxid: 10116)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q8K3P5|CNOT6_MOUSE CCR4-NOT transcription complex subunit 6 OS=Mus musculus GN=Cnot6 PE=1 SV=2

 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 4/64 (6%)

Query: 1   VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSN----DFTHSFKLASAYSEDIMPYT 56
           V+E+LSTG V ++H+DFK+L Y   L     N K+       TH FKL SAY   +MPYT
Sbjct: 421 VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGMTNGRITHGFKLKSAYENGLMPYT 480

Query: 57  NYTY 60
           NYT+
Sbjct: 481 NYTF 484

Poly(A) nuclease involved in mRNA decay mediated by the major-protein-coding determinant of instability (mCRD) of the FOS gene in the cytoplasm. Has 3'-5' RNase activity. The CCR4-NOT complex functions as general transcription regulation complex.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|A2BHJ4|CNO6L_DANRE CCR4-NOT transcription complex subunit 6-like OS=Danio rerio GN=cnot6l PE=2 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 4/64 (6%)

Query: 1   VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSN----DFTHSFKLASAYSEDIMPYT 56
           V+E+LS G V  +H+DFK+L Y   L     N K+       THSF+L SAY  ++MPYT
Sbjct: 414 VVEYLSNGGVAENHKDFKELRYSDCLTNFSCNGKNGKPDGSITHSFQLKSAYEGNLMPYT 473

Query: 57  NYTY 60
           NYTY
Sbjct: 474 NYTY 477

Plays a role in the regulation of cell growth through its deadenylase activity. Displays 3'-5' poly(A) exoribonuclease activity.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5BJ41|CNOT6_XENLA CCR4-NOT transcription complex subunit 6 OS=Xenopus laevis GN=cnot6 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 4/64 (6%)

Query: 1   VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSN----DFTHSFKLASAYSEDIMPYT 56
           V+E+LSTG V ++H+DFK+L Y   L     N K+       TH FKL SAY   +MPYT
Sbjct: 416 VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGMTNGRITHGFKLKSAYENGLMPYT 475

Query: 57  NYTY 60
           NYT+
Sbjct: 476 NYTF 479

Poly(A) nuclease involved in mRNA decay. Has 3'-5' RNase activity. The CCR4-NOT complex functions as general transcription regulation complex.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q9ULM6|CNOT6_HUMAN CCR4-NOT transcription complex subunit 6 OS=Homo sapiens GN=CNOT6 PE=1 SV=2

 Score = 62.0 bits (149), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 45/64 (70%), Gaps = 4/64 (6%)

Query: 1   VIEFLSTGRVTSDHQDFKDLPY-KSVLNKIC--QNDKSND-FTHSFKLASAYSEDIMPYT 56
           V+E+LSTG V ++H+DFK+L Y +S+ N  C  +N  +N   TH FKL SAY   +MPYT
Sbjct: 421 VVEYLSTGGVETNHKDFKELRYNESLTNFSCHGKNGTTNGRITHGFKLQSAYESGLMPYT 480

Query: 57  NYTY 60
           NYT+
Sbjct: 481 NYTF 484

Poly(A) nuclease involved in mRNA decay mediated by the major-protein-coding determinant of instability (mCRD) of the FOS gene in the cytoplasm. Has 3'-5' RNase activity. The CCR4-NOT complex functions as general transcription regulation complex.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q96LI5|CNO6L_HUMAN CCR4-NOT transcription complex subunit 6-like OS=Homo sapiens GN=CNOT6L PE=1 SV=2

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 1   VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSND----FTHSFKLASAYSEDIMPYT 56
           V+E+LS G V  +H+DFK+L Y   L     N K+       TH F+L SAY  ++MPYT
Sbjct: 419 VVEYLSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAYENNLMPYT 478

Query: 57  NYTY 60
           NYT+
Sbjct: 479 NYTF 482

Plays a role in the deadenylation of mRNAs in the cytoplasm. Has 3'-5' poly(A) exoribonuclease activity for synthetic poly(A) RNA substrate. May be involved in the deadenylation-dependent degradation of mRNAs through the 3'-UTR AU-rich element-mediated mechanism. Involved in deadenylation-dependent degradation of CDKN1B mRNA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5XH73|CN6LB_XENLA CCR4-NOT transcription complex subunit 6-like-B OS=Xenopus laevis GN=cnot6l-b PE=2 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 1   VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSN----DFTHSFKLASAYSEDIMPYT 56
           V+E+L+ G V  +H+DFK+L Y   L     N K+       TH F+L SAY  ++MPYT
Sbjct: 414 VVEYLTNGGVADNHKDFKELRYNECLTNFSCNGKNGTPDGRITHGFQLRSAYENNLMPYT 473

Query: 57  NYTY 60
           NYT+
Sbjct: 474 NYTF 477

Plays a role in the regulation of cell growth through its deadenylase activity. Displays 3'-5' poly(A) exoribonuclease activity.

Xenopus laevis (taxid: 8355)

>sp|Q6IR85|CN6LA_XENLA CCR4-NOT transcription complex subunit 6-like-A OS=Xenopus laevis GN=cnot6l-a PE=2 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 1   VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSN----DFTHSFKLASAYSEDIMPYT 56
           V+E+L+ G V  +H+DFK+L Y   L     N K+       TH F+L SAY  ++MPYT
Sbjct: 414 VVEYLTNGGVADNHKDFKELRYNECLTNFNCNGKNGTPDGRITHGFQLRSAYENNLMPYT 473

Query: 57  NYTY 60
           NYT+
Sbjct: 474 NYTF 477

Plays a role in the regulation of cell growth through its deadenylase activity. Displays 3'-5' poly(A) exoribonuclease activity.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q8VEG6|CNO6L_MOUSE CCR4-NOT transcription complex subunit 6-like OS=Mus musculus GN=Cnot6l PE=1 SV=2

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 1   VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSND----FTHSFKLASAYSEDIMPYT 56
           V+E+LS G V  +H+DFK+L Y   L     + K+       TH F+L SAY  ++MPYT
Sbjct: 419 VVEYLSNGGVADNHKDFKELRYNECLMNFSCSGKNGSSEGRITHGFQLKSAYENNLMPYT 478

Query: 57  NYTY 60
           NYT+
Sbjct: 479 NYTF 482

Plays a role in the deadenylation of mRNAs in the cytoplasm. Has 3'-5' poly(A) exoribonuclease activity for synthetic poly(A) RNA substrate. May be involved in the deadenylation-dependent degradation of mRNAs through the 3'-UTR AU-rich element-mediated mechanism. Involved in deadenylation-dependent degradation of CDKN1B mRNA.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	61
345486629	560	PREDICTED: CCR4-NOT transcription comple	0.983	0.107	0.783	8e-20
332017071	455	CCR4-NOT transcription complex subunit 6	0.983	0.131	0.766	2e-19
350406518	814	PREDICTED: hypothetical protein LOC10074	0.983	0.073	0.766	2e-19
328784245	458	PREDICTED: hypothetical protein LOC41255	0.983	0.131	0.766	2e-19
307189213	462	CCR4-NOT transcription complex subunit 6	0.983	0.129	0.766	2e-19
383861531	673	PREDICTED: CCR4-NOT transcription comple	0.983	0.089	0.766	2e-19
307206307	458	CCR4-NOT transcription complex subunit 6	0.983	0.131	0.766	2e-19
340720404	836	PREDICTED: CCR4-NOT transcription comple	0.983	0.071	0.766	2e-19
380018055	547	PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT	0.983	0.109	0.766	2e-19
347971836	548	AGAP004405-PA [Anopheles gambiae str. PE	0.983	0.109	0.75	5e-19

>gi|345486629|ref|XP_001605640.2| PREDICTED: CCR4-NOT transcription complex subunit 6-like [Nasonia vitripennis]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 47/60 (78%), Positives = 53/60 (88%)

Query: 1   VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSEDIMPYTNYTY 60
           VIEFL++GRV SDH+DFKDL YKS L KI   DK+N+FTHSFKLASAYSEDIMPYTNYT+
Sbjct: 431 VIEFLTSGRVASDHRDFKDLAYKSCLQKISGCDKTNEFTHSFKLASAYSEDIMPYTNYTF 490

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017071|gb|EGI57870.1| CCR4-NOT transcription complex subunit 6-like-B [Acromyrmex echinatior]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 52/60 (86%)

Query: 1   VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSEDIMPYTNYTY 60
           VIEFL++GRV +DH+DFKDL YKS L KI   DK N+FTHSFKLASAYSEDIMPYTNYT+
Sbjct: 326 VIEFLTSGRVAADHRDFKDLAYKSCLQKISGCDKPNEFTHSFKLASAYSEDIMPYTNYTF 385

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350406518|ref|XP_003487798.1| PREDICTED: hypothetical protein LOC100747801 [Bombus impatiens]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 52/60 (86%)

Query: 1   VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSEDIMPYTNYTY 60
           VIEFL++GRV +DH+DFKDL YKS L KI   DK N+FTHSFKLASAYSEDIMPYTNYT+
Sbjct: 685 VIEFLTSGRVAADHRDFKDLAYKSCLQKISGCDKPNEFTHSFKLASAYSEDIMPYTNYTF 744

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784245|ref|XP_396007.4| PREDICTED: hypothetical protein LOC412552 [Apis mellifera]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 52/60 (86%)

Query: 1   VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSEDIMPYTNYTY 60
           VIEFL++GRV +DH+DFKDL YKS L KI   DK N+FTHSFKLASAYSEDIMPYTNYT+
Sbjct: 329 VIEFLTSGRVAADHRDFKDLAYKSCLQKISGCDKPNEFTHSFKLASAYSEDIMPYTNYTF 388

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189213|gb|EFN73661.1| CCR4-NOT transcription complex subunit 6-like-B [Camponotus floridanus]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 52/60 (86%)

Query: 1   VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSEDIMPYTNYTY 60
           VIEFL++GRV +DH+DFKDL YKS L KI   DK N+FTHSFKLASAYSEDIMPYTNYT+
Sbjct: 333 VIEFLTSGRVAADHRDFKDLAYKSCLQKISGCDKPNEFTHSFKLASAYSEDIMPYTNYTF 392

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861531|ref|XP_003706239.1| PREDICTED: CCR4-NOT transcription complex subunit 6-like-B-like [Megachile rotundata]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 52/60 (86%)

Query: 1   VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSEDIMPYTNYTY 60
           VIEFL++GRV +DH+DFKDL YKS L KI   DK N+FTHSFKLASAYSEDIMPYTNYT+
Sbjct: 544 VIEFLTSGRVAADHRDFKDLAYKSCLQKISGCDKPNEFTHSFKLASAYSEDIMPYTNYTF 603

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206307|gb|EFN84364.1| CCR4-NOT transcription complex subunit 6-like-B [Harpegnathos saltator]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 52/60 (86%)

Query: 1   VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSEDIMPYTNYTY 60
           VIEFL++GRV +DH+DFKDL YKS L KI   DK N+FTHSFKLASAYSEDIMPYTNYT+
Sbjct: 329 VIEFLTSGRVAADHRDFKDLAYKSCLQKISGCDKPNEFTHSFKLASAYSEDIMPYTNYTF 388

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720404|ref|XP_003398629.1| PREDICTED: CCR4-NOT transcription complex subunit 6-like [Bombus terrestris]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 52/60 (86%)

Query: 1   VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSEDIMPYTNYTY 60
           VIEFL++GRV +DH+DFKDL YKS L KI   DK N+FTHSFKLASAYSEDIMPYTNYT+
Sbjct: 707 VIEFLTSGRVAADHRDFKDLAYKSCLQKISGCDKPNEFTHSFKLASAYSEDIMPYTNYTF 766

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018055|ref|XP_003692952.1| PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 6-like [Apis florea]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 52/60 (86%)

Query: 1   VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSEDIMPYTNYTY 60
           VIEFL++GRV +DH+DFKDL YKS L KI   DK N+FTHSFKLASAYSEDIMPYTNYT+
Sbjct: 418 VIEFLTSGRVAADHRDFKDLAYKSCLQKISGCDKPNEFTHSFKLASAYSEDIMPYTNYTF 477

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347971836|ref|XP_313691.2| AGAP004405-PA [Anopheles gambiae str. PEST] gi|333469051|gb|EAA44583.2| AGAP004405-PA [Anopheles gambiae str. PEST]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/60 (75%), Positives = 50/60 (83%)

Query: 1   VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSEDIMPYTNYTY 60
           VIEFLS GRV+ DHQDFK+L YKS L +I   D  N+FTHSFKLASAYSEDIMPYTNYT+
Sbjct: 416 VIEFLSAGRVSMDHQDFKELGYKSCLQRISNCDTPNEFTHSFKLASAYSEDIMPYTNYTF 475

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	61
FB|FBgn0011725	567	twin "twin" [Drosophila melano	0.967	0.104	0.666	4.8e-17
UNIPROTKB|Q5BJ41	552	cnot6 "CCR4-NOT transcription	0.983	0.108	0.515	1.1e-10
UNIPROTKB|E1C678	557	CNOT6 "Uncharacterized protein	0.983	0.107	0.515	1.1e-10
UNIPROTKB|A6QR51	557	CNOT6 "CNOT6 protein" [Bos tau	0.983	0.107	0.515	1.1e-10
UNIPROTKB|E2QS92	557	CNOT6 "Uncharacterized protein	0.983	0.107	0.515	1.1e-10
UNIPROTKB|Q9ULM6	557	CNOT6 "CCR4-NOT transcription	0.983	0.107	0.515	1.1e-10
MGI|MGI:2144529	557	Cnot6 "CCR4-NOT transcription	0.983	0.107	0.515	1.1e-10
RGD|1310783	557	Cnot6 "CCR4-NOT transcription	0.983	0.107	0.515	1.1e-10
UNIPROTKB|F1S5Q4	566	CNOT6 "Uncharacterized protein	0.983	0.106	0.515	1.1e-10
ZFIN|ZDB-GENE-071004-97	558	zgc:171797 "zgc:171797" [Danio	0.983	0.107	0.531	1.4e-10

FB|FBgn0011725 twin "twin" [Drosophila melanogaster (taxid:7227)]

 Score = 218 (81.8 bits), Expect = 4.8e-17, P = 4.8e-17
 Identities = 40/60 (66%), Positives = 50/60 (83%)

Query:     1 VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSEDIMPYTNYTY 60
             V+EFL  GRV+ DH DFKD+ YKS L ++  ND +N+FTHSFKLASAY+EDIMP+TNYT+
Sbjct:   436 VVEFLGKGRVSMDHLDFKDMGYKSCLQRLLSND-TNEFTHSFKLASAYNEDIMPHTNYTF 494

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=ISS

GO:0030014 "CCR4-NOT complex" evidence=ISS;IDA

GO:0005737 "cytoplasm" evidence=ISS;IDA

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q5BJ41 cnot6 "CCR4-NOT transcription complex subunit 6" [Xenopus laevis (taxid:8355)]

 Score = 159 (61.0 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 33/64 (51%), Positives = 45/64 (70%)

Query:     1 VIEFLSTGRVTSDHQDFKDLPY-KSVLNKIC--QNDKSND-FTHSFKLASAYSEDIMPYT 56
             V+E+LSTG V ++H+DFK+L Y +S+ N  C  +N  +N   TH FKL SAY   +MPYT
Sbjct:   416 VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGMTNGRITHGFKLKSAYENGLMPYT 475

Query:    57 NYTY 60
             NYT+
Sbjct:   476 NYTF 479

GO:2000327 "positive regulation of ligand-dependent nuclear receptor transcription coactivator activity" evidence=ISS

UNIPROTKB|E1C678 CNOT6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 159 (61.0 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 33/64 (51%), Positives = 45/64 (70%)

Query:     1 VIEFLSTGRVTSDHQDFKDLPY-KSVLNKIC--QNDKSND-FTHSFKLASAYSEDIMPYT 56
             V+E+LSTG V ++H+DFK+L Y +S+ N  C  +N  +N   TH FKL SAY   +MPYT
Sbjct:   421 VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGTTNGRITHGFKLKSAYENGLMPYT 480

Query:    57 NYTY 60
             NYT+
Sbjct:   481 NYTF 484

GO:2000327 "positive regulation of ligand-dependent nuclear receptor transcription coactivator activity" evidence=IEA

UNIPROTKB|A6QR51 CNOT6 "CNOT6 protein" [Bos taurus (taxid:9913)]

 Score = 159 (61.0 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 33/64 (51%), Positives = 45/64 (70%)

Query:     1 VIEFLSTGRVTSDHQDFKDLPY-KSVLNKIC--QNDKSND-FTHSFKLASAYSEDIMPYT 56
             V+E+LSTG V ++H+DFK+L Y +S+ N  C  +N  +N   TH FKL SAY   +MPYT
Sbjct:   421 VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGTTNGRITHGFKLKSAYESGLMPYT 480

Query:    57 NYTY 60
             NYT+
Sbjct:   481 NYTF 484

GO:2000327 "positive regulation of ligand-dependent nuclear receptor transcription coactivator activity" evidence=IEA

UNIPROTKB|E2QS92 CNOT6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 159 (61.0 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 33/64 (51%), Positives = 45/64 (70%)

Query:     1 VIEFLSTGRVTSDHQDFKDLPY-KSVLNKIC--QNDKSND-FTHSFKLASAYSEDIMPYT 56
             V+E+LSTG V ++H+DFK+L Y +S+ N  C  +N  +N   TH FKL SAY   +MPYT
Sbjct:   421 VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGTTNGRITHGFKLKSAYESGLMPYT 480

Query:    57 NYTY 60
             NYT+
Sbjct:   481 NYTF 484

GO:2000327 "positive regulation of ligand-dependent nuclear receptor transcription coactivator activity" evidence=IEA

UNIPROTKB|Q9ULM6 CNOT6 "CCR4-NOT transcription complex subunit 6" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 33/64 (51%), Positives = 45/64 (70%)

Query:     1 VIEFLSTGRVTSDHQDFKDLPY-KSVLNKIC--QNDKSND-FTHSFKLASAYSEDIMPYT 56
             V+E+LSTG V ++H+DFK+L Y +S+ N  C  +N  +N   TH FKL SAY   +MPYT
Sbjct:   421 VVEYLSTGGVETNHKDFKELRYNESLTNFSCHGKNGTTNGRITHGFKLQSAYESGLMPYT 480

Query:    57 NYTY 60
             NYT+
Sbjct:   481 NYTF 484

GO:0003723 "RNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:2000327 "positive regulation of ligand-dependent nuclear receptor transcription coactivator activity" evidence=IDA

GO:0035195 "gene silencing by miRNA" evidence=TAS

GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay" evidence=IDA

GO:0030014 "CCR4-NOT complex" evidence=IDA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=TAS

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS

GO:0004535 "poly(A)-specific ribonuclease activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

MGI|MGI:2144529 Cnot6 "CCR4-NOT transcription complex, subunit 6" [Mus musculus (taxid:10090)]

 Score = 159 (61.0 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 33/64 (51%), Positives = 45/64 (70%)

Query:     1 VIEFLSTGRVTSDHQDFKDLPY-KSVLNKIC--QNDKSND-FTHSFKLASAYSEDIMPYT 56
             V+E+LSTG V ++H+DFK+L Y +S+ N  C  +N  +N   TH FKL SAY   +MPYT
Sbjct:   421 VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGMTNGRITHGFKLKSAYENGLMPYT 480

Query:    57 NYTY 60
             NYT+
Sbjct:   481 NYTF 484

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030014 "CCR4-NOT complex" evidence=ISO

GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:2000327 "positive regulation of ligand-dependent nuclear receptor transcription coactivator activity" evidence=ISO

RGD|1310783 Cnot6 "CCR4-NOT transcription complex, subunit 6" [Rattus norvegicus (taxid:10116)]

 Score = 159 (61.0 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 33/64 (51%), Positives = 45/64 (70%)

Query:     1 VIEFLSTGRVTSDHQDFKDLPY-KSVLNKIC--QNDKSND-FTHSFKLASAYSEDIMPYT 56
             V+E+LSTG V ++H+DFK+L Y +S+ N  C  +N  +N   TH FKL SAY   +MPYT
Sbjct:   421 VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGMTNGRITHGFKLKSAYENGLMPYT 480

Query:    57 NYTY 60
             NYT+
Sbjct:   481 NYTF 484

GO:0003723 "RNA binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0030014 "CCR4-NOT complex" evidence=ISO

GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:2000327 "positive regulation of ligand-dependent nuclear receptor transcription coactivator activity" evidence=ISO;ISS

UNIPROTKB|F1S5Q4 CNOT6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 159 (61.0 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 33/64 (51%), Positives = 45/64 (70%)

Query:     1 VIEFLSTGRVTSDHQDFKDLPY-KSVLNKIC--QNDKSND-FTHSFKLASAYSEDIMPYT 56
             V+E+LSTG V ++H+DFK+L Y +S+ N  C  +N  +N   TH FKL SAY   +MPYT
Sbjct:   430 VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGTTNGRITHGFKLKSAYESGLMPYT 489

Query:    57 NYTY 60
             NYT+
Sbjct:   490 NYTF 493

GO:2000327 "positive regulation of ligand-dependent nuclear receptor transcription coactivator activity" evidence=IEA

ZFIN|ZDB-GENE-071004-97 zgc:171797 "zgc:171797" [Danio rerio (taxid:7955)]

 Score = 158 (60.7 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 34/64 (53%), Positives = 43/64 (67%)

Query:     1 VIEFLSTGRVTSDHQDFKDLPYK-SVLNKIC--QNDKSND-FTHSFKLASAYSEDIMPYT 56
             V+E+LSTG V   H+DFK+L Y  S+ N  C  +N  SN   TH+FKL SAY   +MPYT
Sbjct:   422 VVEYLSTGGVDCTHKDFKELRYSDSLTNFNCNGKNSTSNGRITHAFKLKSAYENGLMPYT 481

Query:    57 NYTY 60
             NYT+
Sbjct:   482 NYTF 485

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ULM6	CNOT6_HUMAN	3, ., 1, ., -, ., -	0.5156	0.9836	0.1077	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	61
cd09097	329	cd09097, Deadenylase_CCR4, C-terminal deadenylase	1e-13
cd10312	348	cd10312, Deadenylase_CCR4b, C-terminal deadenylase	2e-13
cd10313	350	cd10313, Deadenylase_CCR4a, C-terminal deadenylase	4e-13

>gnl|CDD|197331 cd09097, Deadenylase_CCR4, C-terminal deadenylase domain of CCR4 and related domains

 Score = 62.7 bits (153), Expect = 1e-13
 Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 8/61 (13%)

Query: 1   VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSED-IMPYTNYT 59
           V E LS G V+ +H DFK+ PY   L        ++  THSFKL SAY+    +P+TNYT
Sbjct: 221 VYELLSNGSVSPNHPDFKEDPYGEYL-------TASGLTHSFKLKSAYANLGELPFTNYT 273

Query: 60  Y 60
            
Sbjct: 274 P 274

This subfamily contains the C-terminal catalytic domain of the deadenylases, Saccharomyces cerevisiae Ccr4p and two vertebrate homologs (CCR4a and CCR4b), and related domains. CCR4 belongs to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. CCR4 is the major deadenylase subunit of the CCR4-NOT transcription complex, which contains two deadenylase subunits and several noncatalytic subunits. The other deadenylase subunit, Caf1 (called Pop2 in yeast), is a DEDD-type protein and does not belong in this superfamily. Saccharomyces cerevisiae CCR4 (or Ccr4p) is a 3'-5' poly(A) RNA and ssDNA exonuclease. It is the catalytic subunit of the yeast mRNA deadenylase (Ccr4p/Pop2p/Not complex). This complex participates in various ways in mRNA metabolism, including transcription initiation and elongation, and mRNA degradation. Ccr4p degrades both poly(A) and single-stranded DNA. There are two vertebrate homologs of Ccr4p, CCR4a (also called CCR4-NOT transcription complex subunit 6 or CNOT6) and CCR4b (also called CNOT6-like or CNOT6L), which independently associate with other components to form distinct CCR4-NOT multisubunit complexes. The nuclease domain of CNOT6 and CNOT6L exhibits Mg2+-dependent deadenylase activity, with specificity for poly (A) RNA as substrate. CCR4a is a component of P-bodies and is necessary for foci formation. CCR4b regulates p27/Kip1 mRNA levels, thereby influencing cell cycle progression. They both contribute to the prevention of cell death by regulating insulin-like growth factor-binding protein 5. Length = 329

>gnl|CDD|197339 cd10312, Deadenylase_CCR4b, C-terminal deadenylase domain of CCR4b, also known as CCR4-NOT transcription complex subunit 6-like

 Score = 62.0 bits (150), Expect = 2e-13
 Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 1   VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSND----FTHSFKLASAYSEDIMPYT 56
           V+E+LS G V  +H+DFK+L Y   L     N K+       TH F+L SAY  ++MPYT
Sbjct: 229 VVEYLSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAYENNLMPYT 288

Query: 57  NYTY 60
           NYT+
Sbjct: 289 NYTF 292

This subfamily contains the C-terminal catalytic domain of the deadenylase, CCR4b, also known as CCR4-NOT transcription complex subunit 6-like (CNOT6L). CCR4 belongs to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. CCR4 is the major deadenylase subunit of the CCR4-NOT transcription complex, which contains two deadenylase subunits and several noncatalytic subunits. The other deadenylase subunit, Caf1, is a DEDD-type protein and does not belong in this superfamily. There are two vertebrate CCR4 proteins, CCR4a (also called CCR4-NOT transcription complex subunit 6 or CNOT6) and CCR4b. CCR4b associates with other components, such as CNOT1-3 and Caf1, to form a CCR4-NOT multisubunit complex, which regulates transcription and mRNA degradation. The nuclease domain of CCR4b exhibits Mg2+-dependent deadenylase activity with strict specificity for poly (A) RNA as substrate. CCR4b is mainly localized in the cytoplasm. It regulates cell growth and influences cell cycle progression by regulating p27/Kip1 mRNA levels. It contributes to the prevention of cell death by regulating insulin-like growth factor-binding protein 5. Length = 348

>gnl|CDD|197340 cd10313, Deadenylase_CCR4a, C-terminal deadenylase domain of CCR4a, also known as CCR4-NOT transcription complex subunit 6

 Score = 61.2 bits (148), Expect = 4e-13
 Identities = 33/64 (51%), Positives = 45/64 (70%), Gaps = 4/64 (6%)

Query: 1   VIEFLSTGRVTSDHQDFKDLPY-KSVLNKIC--QNDKSND-FTHSFKLASAYSEDIMPYT 56
           V+E+LSTG V ++H+DFK+L Y +S+ N  C  +N  +N   TH FKL SAY   +MPYT
Sbjct: 231 VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGTTNGRITHGFKLKSAYENGLMPYT 290

Query: 57  NYTY 60
           NYT+
Sbjct: 291 NYTF 294

This subfamily contains the C-terminal catalytic domain of the deadenylase, CCR4a, also known as CCR4-NOT transcription complex subunit 6 (CNOT6). CCR4 belongs to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. CCR4 is the major deadenylase subunit of the CCR4-NOT transcription complex, which contains two deadenylase subunits and several noncatalytic subunits. The other deadenylase subunit, Caf1, is a DEDD-type protein and does not belong in this superfamily. There are two vertebrate CCR4 proteins, CCR4a and CCR4b (also called CNOT6-like or CNOT6L). CCR4a associates with other components, such as CNOT1-3 and Caf1, to form a CCR4-NOT multisubunit complex, which regulates transcription and mRNA degradation. The nuclease domain of CCR4a exhibits Mg2+-dependent deadenylase activity with specificity for poly (A) RNA as substrate. CCR4a is a component of P-bodies and is necessary for foci formation of various P-body components. It also plays a role in cellular responses to DNA damage, by regulating Chk2 activity. Length = 350

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	61
PLN03144	606	Carbon catabolite repressor protein 4 homolog; Pro	99.07
KOG0620|consensus	361		98.23
COG5239	378	CCR4 mRNA deadenylase, exonuclease subunit and rel	97.47

>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional

Probab=99.07  E-value=4.2e-11  Score=91.07  Aligned_cols=52  Identities=33%  Similarity=0.424  Sum_probs=44.2

Q ss_pred             CEEecccCCCCCCCccccCCCccchhhhhccCCC-CCceeccCCCccccCC----------------------CCCCcee
Q psy6945           1 VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDK-SNDFTHSFKLASAYSE----------------------DIMPYTN   57 (61)
Q Consensus         1 VyelLs~G~V~~~H~Df~~~~y~~~l~~~~~~~~-~~~l~H~f~L~SAY~~----------------------~~l~fTN   57 (61)
                      ||+||++|.|+.+||||....++..        . ...++|+|+|+|||..                      ++|+|||
T Consensus       472 vy~lLt~G~v~~~h~d~~~~~~~~~--------~~~~~l~H~~~L~SAY~~~~~~~g~~~~~~~~~~r~~~~~geP~fTN  543 (606)
T PLN03144        472 PHCLLATGKVDPLHPDLAVDPLGIL--------RPASKLTHQLPLVSAYSSFARMPGSGSGLEQQRRRMDPATNEPLFTN  543 (606)
T ss_pred             hhhhhhcCCcCCCchhhccCccccc--------cccccccCCCcccchhhhhccccccccchhhhhhccccccCCCCcee
Confidence            7899999999999999998766544        2 5679999999999963                      4899999


Q ss_pred             eee
Q psy6945          58 YTY   60 (61)
Q Consensus        58 yT~   60 (61)
                      ||-
T Consensus       544 yt~  546 (606)
T PLN03144        544 CTR  546 (606)
T ss_pred             ecC
Confidence            984

>KOG0620|consensus

Probab=98.23  E-value=6.2e-07  Score=64.90  Aligned_cols=60  Identities=27%  Similarity=0.409  Sum_probs=51.7

Q ss_pred             CEEecccCCCCCCCccccCCCccchhhhhccCCCCCceeccCCCccccCCCCCCceeeeeC
Q psy6945           1 VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSEDIMPYTNYTYV   61 (61)
Q Consensus         1 VyelLs~G~V~~~H~Df~~~~y~~~l~~~~~~~~~~~l~H~f~L~SAY~~~~l~fTNyT~~   61 (61)
                      ||+++..|.++.+|+||+...+.....++.+. ..+.++|.++++++|.+.++.|||||.+
T Consensus       238 v~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ftn~t~~  297 (361)
T KOG0620|consen  238 VYALLASGILSPEDADNKDLPLMSALGSKVNK-SYEEMSHDQRRKLEYTTGEPRFTNYTPG  297 (361)
T ss_pred             ceeecccCCCCcchhhHhhccccccccccccc-cccccchhhhcccccccCccccccccCC
Confidence            78999999999999999999998886554443 3567999999999999988999999963

>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]

Probab=97.47  E-value=2.5e-05  Score=57.36  Aligned_cols=50  Identities=26%  Similarity=0.404  Sum_probs=41.5

Q ss_pred             CEEecccCCCCCCCccccCCCccchhhhhccCCCC-CceeccCCCccccCCCCCCceeee
Q psy6945           1 VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKS-NDFTHSFKLASAYSEDIMPYTNYT   59 (61)
Q Consensus         1 VyelLs~G~V~~~H~Df~~~~y~~~l~~~~~~~~~-~~l~H~f~L~SAY~~~~l~fTNyT   59 (61)
                      ||++|.++.| ..|.++..++++-.        +. .++.||+.|+|+...++|+|||||
T Consensus       259 vy~~l~~~~~-q~H~~~~~~~~~ly--------svg~~~~h~~n~~~~~~~~~~~fTN~t  309 (378)
T COG5239         259 VYKFLVTSQI-QLHESLNGRDFSLY--------SVGYKFVHPENLKSDNSKGELGFTNWT  309 (378)
T ss_pred             ehhhhhhHHH-Hhhhcccccchhhh--------cccccccChhhcccCCCcCCccccccc
Confidence            6788888666 78999999988776        43 689999999995555999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	61
3ngq_A	398	Crystal Structure Of The Human Cnot6l Nuclease Doma		3e-10
3ngn_A	398	Crystal Structure Of The Human Cnot6l Nuclease Doma		4e-10

>pdb|3NGQ|A Chain A, Crystal Structure Of The Human Cnot6l Nuclease Domain Length = 398

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 1   VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSND----FTHSFKLASAYSEDIMPYT 56
           V+E+LS G V  +H+DFK+L Y   L     N K+       TH F+L SAY  ++MPYT
Sbjct: 262 VVEYLSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAYENNLMPYT 321
Query: 57  NYTY 60
           NYT+
Sbjct: 322 NYTF 325

>pdb|3NGN|A Chain A, Crystal Structure Of The Human Cnot6l Nuclease Domain In Complex With Amp Length = 398

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 1   VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSND----FTHSFKLASAYSEDIMPYT 56
           V+E+LS G V  +H+DFK+L Y   L     N K+       TH F+L SAY  ++MPYT
Sbjct: 262 VVEYLSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAYENNLMPYT 321
Query: 57  NYTY 60
           NYT+
Sbjct: 322 NYTF 325

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	61
3ngq_A	398	CCR4-NOT transcription complex subunit 6-like; alp	2e-05

>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A Length = 398

 Score = 38.8 bits (89), Expect = 2e-05
 Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 4/64 (6%)

Query: 1   VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDK----SNDFTHSFKLASAYSEDIMPYT 56
           V+E+LS G V  +H+DFK+L Y   L     N K        TH F+L SAY  ++MPYT
Sbjct: 262 VVEYLSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAYENNLMPYT 321

Query: 57  NYTY 60
           NYT+
Sbjct: 322 NYTF 325

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	61
3ngq_A	398	CCR4-NOT transcription complex subunit 6-like; alp	99.59
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.07

>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A

Probab=99.59  E-value=1.1e-16  Score=114.16  Aligned_cols=60  Identities=48%  Similarity=0.898  Sum_probs=47.6

Q ss_pred             CEEecccCCCCCCCccccCCCccchhhhhccCCC----CCceeccCCCccccCCCCCCceeeee
Q psy6945           1 VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDK----SNDFTHSFKLASAYSEDIMPYTNYTY   60 (61)
Q Consensus         1 VyelLs~G~V~~~H~Df~~~~y~~~l~~~~~~~~----~~~l~H~f~L~SAY~~~~l~fTNyT~   60 (61)
                      ||++|++|.|+.+|+||+++.|+.++.+|+++..    ...++|||+|+|||+.++|||||||.
T Consensus       262 vy~~L~~G~v~~~h~d~~~~~y~~~~~~~~~~~~~~~~~~~~~h~~~L~SAy~~~~~~fTnyt~  325 (398)
T 3ngq_A          262 VVEYLSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAYENNLMPYTNYTF  325 (398)
T ss_dssp             HHHHHHHTEEETTCGGGCC-----GGGGGCC-------CCEEECSCCEEETTTTTSSSCSEECS
T ss_pred             HHHHHhcCCCCCCChhhhhcccccccccccccccccccccccccCccccccccCCCCCceeccC
Confidence            5899999999999999999999999998877532    34699999999999988999999995

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.07  E-value=5.9e-07  Score=66.73  Aligned_cols=51  Identities=33%  Similarity=0.588  Sum_probs=7.0

Q ss_pred             CEEecccCCCCCCCccccCCCccchhhhhccCCCCCceeccCCCccccCC-CCCCceeeee
Q psy6945           1 VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSE-DIMPYTNYTY   60 (61)
Q Consensus         1 VyelLs~G~V~~~H~Df~~~~y~~~l~~~~~~~~~~~l~H~f~L~SAY~~-~~l~fTNyT~   60 (61)
                      ||++|++|.|. +|+||....|+.+        +..+++|+++|.+||+. ++++||||+-
T Consensus       612 ~~~~l~~~~v~-~~~d~~~~~~~~~--------~~~~~~~~~~l~say~~~~~~~~T~~~~  663 (727)
T 4b8c_D          612 VYELINTGRVQ-IHQEGNGRDFGYM--------SEKNFSHNLALKSSYNCIGELPFTNFTP  663 (727)
T ss_dssp             -----------------------------------------------------CCCSBCCS
T ss_pred             ceEeeecCCcC-cchhhcccccccc--------ccccccccccccchhhcCCCCccccccC
Confidence            68999999997 8999999999877        56789999999999997 6899999974

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00