Psyllid ID: psy6995

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
Protein Sequence
MDPDEIEKVLFENIPLEHQNWLGMDDNLGPVAISLKREKVEYTQESQQMYRYRLLIRTSELKTGKIGRNLSKSGQNTAKRSNHLNQTYERSFSPPRSSNSSGYGTGSSSRSFMGVDNRFPVSLEVSPATLFSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRLICKVAVSTLSHDQMVDLLKTSSLVTVTVIPALSDGTPRRYADLKMWRSVV
Secondary Structure (PSIPRED)
ccHHHHHHHHccccccccccccccccccccEEEEEEEEEEcccccccccEEEEEEEEEcccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccEEEEEEEEccEEEEEEcccccEEEEcccccEEEEccccccEEEEEEEccEEEEEEEccccccccHHHHHHHHHHHcccccccEEEEEcccccccccEEEcccccEEEEccccHHHHHccccccEEEccEEEEcccHHHHHHHHHcccEEEEEEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHEHEEEcccHHHHHHcccccccccEEEEEEEEcccccccccccEEEEEEEEEcEEEEEEHHHHHHcccccHccccHHHHHHccccccHHHHHHHccccccccccEEEEccccccEEEEEccHEcccccccccccccccccHccccEEEEEEEEEcccccccEEEEEEEcccEEEEEEccccEEEEEcccccEEEEccccccEEEEEccccEEEEEEcccccccHHHHHHHHHHHHHHccccccEEEEEcccccccccEEEccccEEEEEcccHHHHHcccccccEEEEcEEEEcccHHHHHHHHHcccEEEEEEEccccccccccccEEEEEEEcc
Coil and Loop (DISEMBL)
MDPDEIEKVLfeniplehqnwlgmddnlgpVAISLKREKVEYTQESQQMYRYRLLIRtselktgkigrnlsksgqntakrsnhlnqtyersfspprssnssgygtgsssrsfmgvdnrfpvslevspatlfsskkkerwrpriipdtlqkGAICWQVsledsktgslmHCVLAISTDSVVLVEEQSRDLVFVAPAksvlgwatstnslrlyhhqgevtrihmreggggdrdELMEVVVRLRaatpgspaqeltlkrnglgqlgfhvqpdglvTEVEHMGLAYQEGLKQGCRLICKVAVSTLSHDQMVDLLKTSSLVTVTvipalsdgtprryaDLKMWRSVV
Flexible Loop (DISEMBL)
MDPDEIEKVLFENiplehqnwlgmddNLGPVAISLKREKVEYTQESQQMYRYRLLIRtselktgkigrnlsksgqntakrsnhlnqtyersfspprssnssgyGTGSSSRSFMGVDNRfpvslevspatlfsskkkerwrpriipdtlqkgaICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVlgwatstnslrlyhHQGEVTRIHmreggggdrDELMEVVVRLRaatpgspaqelTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRLICKVAVSTLSHDQMVDLLKTSSLVtvtvipalsdgtprryadlkmwrsvv
Low Complexity Region (SEG)
MDPDEIEKVLFENIPLEHQNWLGMDDNLGPVAISLKREKVEYTQESQQMYRYRLLIRTSELKTGKIGRNLSKSGQNTAKRSNHLNQTYErsfspprssnssgygtgsssrsFMGVDNRFPVSLEVSPATLFSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRLICKVAVSTLSHDQMVDLLKTSSLVTVTVIPALSDGTPRRYADLKMWRSVV
Disordered region (IsUnstruct)
*******KVLFENIPLEHQNWLGMDDNLGPVAISLKREKVEYTQESQQMYRYRLLIRTS******************************************************************************RWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMR********ELMEVVVRLRA*********LTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRLICKVAVSTLSHDQMVDLLKTSSLVTVTVIPALSDGTPRRYADLK******
Disordered Region (DISOPRED)
***DEIEKVLFENIPLEHQNWLGMDDNLGPVAIS*****************YRLLIRTSELKTGKIGR*****************************SNSSGYGTGSSSRSFM********************************DTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRLICKVAVSTLSHDQMVDLLKTSSLVTVTVIPALS******YADLKMWRSVV
Disordered Region (DISEMBL)
MDPDEIEKVLFENIPLEHQNWLGMDDNLGPVAISLKREKVEYTQESQQMYRYRLLIRTSELKTGKIGRNLSKSGQNTAKRSNHLNQTY********************SRSFMGVDNRFPVSLEVSPATLFSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRLICKVAVSTLSHDQMVDLLKTSSLVTVTVIPALSDGTPRRYADLKMWRSVV
Disordered Region (DISPRO)
MDPDEIEKVLFENIPLEHQNWLGMDDNLGPVAISLKREKVEYTQESQQMYRYRLLIRTSELKTGKIGRNLSKSGQN******HLNQTYERSFSPPRSSNSSGYGTGSSSRSFMGVDNRFPVSLEVSPATLFSSKK*ERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRLICKVAVSTLSHDQMVDLLKTSSLVTVTVIPALSDGTPRRYADLKMWRSVV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPDEIEKVLFENIPLEHQNWLGMDDNLGPVAISLKREKVEYTQESQQMYRYRLLIRTSELKTGKIGRNLSKSGQNTAKRSNHLNQTYERSFSPPRSSNSSGYGTGSSSRSFMGVDNRFPVSLEVSPATLFSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRLICKVAVSTLSHDQMVDLLKTSSLVTVTVIPALSDGTPRRYADLKMWRSVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	342	2.2.26 [Sep-21-2011]
O43166	1804	Signal-induced proliferat	yes	N/A	0.587	0.111	0.434	2e-44
O35412	1822	Signal-induced proliferat	yes	N/A	0.587	0.110	0.429	2e-43
O60292	1781	Signal-induced proliferat	no	N/A	0.578	0.111	0.448	2e-43
Q8C0T5	1782	Signal-induced proliferat	no	N/A	0.587	0.112	0.425	3e-43
Q80TE4	1722	Signal-induced proliferat	no	N/A	0.573	0.113	0.422	1e-39
Q5JCS6	1722	Signal-induced proliferat	no	N/A	0.573	0.113	0.412	2e-39
Q9P2F8	1722	Signal-induced proliferat	no	N/A	0.520	0.103	0.426	3e-37
P46062	1037	Signal-induced proliferat	no	N/A	0.482	0.159	0.350	2e-21
Q96FS4	1042	Signal-induced proliferat	no	N/A	0.464	0.152	0.365	3e-21

>sp|O43166|SI1L1_HUMAN Signal-induced proliferation-associated 1-like protein 1 OS=Homo sapiens GN=SIPA1L1 PE=1 SV=4

 Score =  179 bits (455), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/207 (43%), Positives = 133/207 (64%), Gaps = 6/207 (2%)

Query: 127  PATLFSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQS 186
            P    +SKKKE+ +P    +    GAI W V  ED      + C+L IS + +VL+E+++
Sbjct: 833  PFISLASKKKEKSKPYPGAELSSMGAIVWAVRAEDYNKAMELDCLLGISNEFIVLIEQET 892

Query: 187  RDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPG 246
            + +VF    + V+GW ++  SL++++ +GE   +    G   + +E+ E+V RL+  + G
Sbjct: 893  KSVVFNCSCRDVIGWTSTDTSLKIFYERGECVSV----GSFINIEEIKEIVKRLQFVSKG 948

Query: 247  SPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHD 304
              + E+TL+RNGLGQLGFHV  +G+V +VE  G A+Q GL+QG RL  ICKVAV+TLSH+
Sbjct: 949  CESVEMTLRRNGLGQLGFHVNYEGIVADVEPYGYAWQAGLRQGSRLVEICKVAVATLSHE 1008

Query: 305  QMVDLLKTSSLVTVTVIPALSDGTPRR 331
            QM+DLL+TS  V V +IP   D TPRR
Sbjct: 1009 QMIDLLRTSVTVKVVIIPPHDDCTPRR 1035

Stimulates the GTPase activity of RAP2A. Promotes reorganization of the actin cytoskeleton and recruits DLG4 to F-actin. Contributes to the regulation of dendritic spine morphogenesis.
Homo sapiens (taxid: 9606)

>sp|O35412|SI1L1_RAT Signal-induced proliferation-associated 1-like protein 1 OS=Rattus norvegicus GN=Sipa1l1 PE=1 SV=1

 Score =  176 bits (446), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/207 (42%), Positives = 131/207 (63%), Gaps = 6/207 (2%)

Query: 127  PATLFSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQS 186
            P    +SKKKE+ +P    +    GAI W V  +D        C+L IS + +VL+E+++
Sbjct: 872  PFISLASKKKEKSKPYPGAELSSMGAIVWAVRAKDYNKAMEFDCLLGISNEFIVLIEQET 931

Query: 187  RDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPG 246
            + +VF    + V+GW +S +SL++++ +GE   +          +++ E+V RL+  + G
Sbjct: 932  KSVVFNCSCRDVIGWTSSDSSLKIFYERGECISVESFMSS----EDIKEIVKRLQFVSKG 987

Query: 247  SPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHD 304
              + E+TL+RNGLGQLGFHV  +G+V +VE  G A+Q GLKQG RL  ICKVAV+TLSH+
Sbjct: 988  CESVEMTLRRNGLGQLGFHVNYEGIVADVEPYGYAWQAGLKQGSRLVEICKVAVATLSHE 1047

Query: 305  QMVDLLKTSSLVTVTVIPALSDGTPRR 331
            QM+DLL+TS  V V +IP   D TPRR
Sbjct: 1048 QMIDLLRTSVTVKVVIIPPHDDCTPRR 1074

Stimulates the GTPase activity of RAP2A. Promotes reorganization of the actin cytoskeleton and recruits DLG4 to F-actin. Contributes to the regulation of dendritic spine morphogenesis.

Rattus norvegicus (taxid: 10116)

>sp|O60292|SI1L3_HUMAN Signal-induced proliferation-associated 1-like protein 3 OS=Homo sapiens GN=SIPA1L3 PE=1 SV=3

 Score =  176 bits (446), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 91/203 (44%), Positives = 131/203 (64%), Gaps = 5/203 (2%)

Query: 131  FSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLV 190
             +SKKKE+ + R   +    GAI W+V  +D   G  + C+L IS + VVL++ +++++V
Sbjct: 849  LTSKKKEKTKARAGAEQHSAGAIAWRVVAQDYAQGVEIDCILGISNEFVVLLDLRTKEVV 908

Query: 191  FVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQ 250
            F      V+GW   +++L++++ +G+   +   EG   D   + E+V RL+  T G    
Sbjct: 909  FNCYCGDVIGWTPDSSTLKIFYGRGDHIFLQATEGSVED---IREIVQRLKVMTSGWETV 965

Query: 251  ELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVD 308
            ++TL+RNGLGQLGFHV+ DG V EVE  G A+Q GL+QG RL  ICKVAV TL+HDQM+D
Sbjct: 966  DMTLRRNGLGQLGFHVKYDGTVAEVEDYGFAWQAGLRQGSRLVEICKVAVVTLTHDQMID 1025

Query: 309  LLKTSSLVTVTVIPALSDGTPRR 331
            LL+TS  V V +IP   DGTPRR
Sbjct: 1026 LLRTSVTVKVVIIPPFEDGTPRR 1048

Homo sapiens (taxid: 9606)

>sp|Q8C0T5|SI1L1_MOUSE Signal-induced proliferation-associated 1-like protein 1 OS=Mus musculus GN=Sipa1l1 PE=1 SV=2

 Score =  176 bits (446), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 88/207 (42%), Positives = 131/207 (63%), Gaps = 6/207 (2%)

Query: 127  PATLFSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQS 186
            P    +SKKKE+ +P    +    GAI W V  +D        C+L IS++ +VL+E+++
Sbjct: 833  PFISLASKKKEKSKPYPGAELSSMGAIVWAVRAKDYNKAMEFDCLLGISSEFIVLIEQET 892

Query: 187  RDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPG 246
            + + F    + V+GW +S  SL++++ +GE   +     G    +++ E+V RL+  + G
Sbjct: 893  KSVAFNCSCRDVIGWTSSDTSLKIFYERGECVSVESFISG----EDIKEIVRRLQFVSKG 948

Query: 247  SPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHD 304
              + E+TL+RNGLGQLGFHV  +G+V +VE  G A+Q GL+QG RL  ICKVAV+TLSH+
Sbjct: 949  CESVEMTLRRNGLGQLGFHVNYEGIVADVEPYGYAWQAGLRQGSRLVEICKVAVATLSHE 1008

Query: 305  QMVDLLKTSSLVTVTVIPALSDGTPRR 331
            QM+DLL+TS  V V +IP   D TPRR
Sbjct: 1009 QMIDLLRTSVTVKVVIIPPHDDCTPRR 1035

Stimulates the GTPase activity of RAP2A. Promotes reorganization of the actin cytoskeleton and recruits DLG4 to F-actin. Contributes to the regulation of dendritic spine morphogenesis.

Mus musculus (taxid: 10090)

>sp|Q80TE4|SI1L2_MOUSE Signal-induced proliferation-associated 1-like protein 2 OS=Mus musculus GN=Sipa1l2 PE=1 SV=3

 Score =  164 bits (415), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 85/201 (42%), Positives = 125/201 (62%), Gaps = 5/201 (2%)

Query: 133  SKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLVFV 192
            +KKKER +PR        GAI W V   D    + + C+L IS + ++L+E+ S+++VF 
Sbjct: 836  AKKKERVKPRKDAHLFSIGAIMWHVVARDFGQSADIECLLGISNEFIMLIEKDSKNVVFN 895

Query: 193  APAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQEL 252
               + V+GW +   S++ ++ +GE   +   +    D   + E+V RL   T G    E+
Sbjct: 896  CSCRDVIGWTSGLVSIKAFYERGECLLLSSVDNRSED---IREIVQRLLIVTRGCETVEM 952

Query: 253  TLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLL 310
            TL+RNGLGQLGFHV  +G+V +VE  G A++ GL+QG RL  ICKVAV+TL+H+QM+DLL
Sbjct: 953  TLRRNGLGQLGFHVNFEGIVADVEPFGFAWKAGLRQGSRLVEICKVAVATLTHEQMIDLL 1012

Query: 311  KTSSLVTVTVIPALSDGTPRR 331
            +TS  V V +I    DG+PRR
Sbjct: 1013 RTSVTVKVVIIQPHEDGSPRR 1033

Mus musculus (taxid: 10090)

>sp|Q5JCS6|SI1L2_RAT Signal-induced proliferation-associated 1-like protein 2 OS=Rattus norvegicus GN=Sipa1l2 PE=2 SV=1

 Score =  162 bits (411), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/201 (41%), Positives = 125/201 (62%), Gaps = 5/201 (2%)

Query: 133  SKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLVFV 192
            +KKKER +PR        GAI W V        + + C+L IS + ++L+E++S+++ F 
Sbjct: 836  AKKKERVKPRTDAHLFSIGAIMWHVVARYFGQSADIECLLGISNEFIMLIEKESKNVAFN 895

Query: 193  APAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQEL 252
               + V+GW +   S+++++ +GE   +   +    D   + E+V RL   T G    E+
Sbjct: 896  CSCRDVIGWTSGLVSIKIFYERGECILLSSVDNSSED---IREIVQRLVIVTRGCETVEM 952

Query: 253  TLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLL 310
            TL+RNGLGQLGFHV  +G+V +VE  G A++ GL+QG RL  ICKVAV+TL+H+QM+DLL
Sbjct: 953  TLRRNGLGQLGFHVNFEGIVADVEPFGFAWKAGLRQGSRLVEICKVAVATLTHEQMIDLL 1012

Query: 311  KTSSLVTVTVIPALSDGTPRR 331
            +TS  V V +I    DG+PRR
Sbjct: 1013 RTSVTVKVVIIQPHEDGSPRR 1033

Rattus norvegicus (taxid: 10116)

>sp|Q9P2F8|SI1L2_HUMAN Signal-induced proliferation-associated 1-like protein 2 OS=Homo sapiens GN=SIPA1L2 PE=1 SV=2

 Score =  156 bits (394), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 78/183 (42%), Positives = 117/183 (63%), Gaps = 5/183 (2%)

Query: 151  GAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRL 210
            GAI W V   D    + + C+L IS + ++L+E+ S+++VF    + V+GW +   S+++
Sbjct: 853  GAIMWHVIARDFGQSADIECLLGISNEFIMLIEKDSKNVVFNCSCRDVIGWTSGLVSIKV 912

Query: 211  YHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPDG 270
            ++ +GE   +   +    D   + E+V RL   T G    E+TL+RNGLGQLGFHV  +G
Sbjct: 913  FYERGECVLLSSVDNCAED---IREIVQRLVIVTRGCETVEMTLRRNGLGQLGFHVNFEG 969

Query: 271  LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTVTVIPALSDGT 328
            +V +VE  G A++ GL+QG RL  ICKVAV+TL+H+QM+DLL+TS  V V +I    DG+
Sbjct: 970  IVADVEPFGFAWKAGLRQGSRLVEICKVAVATLTHEQMIDLLRTSVTVKVVIIQPHDDGS 1029

Query: 329  PRR 331
            PRR
Sbjct: 1030 PRR 1032

Homo sapiens (taxid: 9606)

>sp|P46062|SIPA1_MOUSE Signal-induced proliferation-associated protein 1 OS=Mus musculus GN=Sipa1 PE=2 SV=2

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 6/171 (3%)

Query: 170 CVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGD 229
           C+L IS +++VLV  +   +VF    + VL W  S + L LYH +GE   + +    G  
Sbjct: 604 CLLGISAETLVLVAPRDGRVVFNCACRDVLAWTFSEHQLDLYHGRGEAITLRL---DGAP 660

Query: 230 RDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQG 289
              + EVV RL+  + G   +EL L R+G G+LGF V  +G +T VE    A   GL+ G
Sbjct: 661 GQAVGEVVARLQLVSRGCETRELALPRDGQGRLGFEVDAEGFITHVERFTFAETTGLRPG 720

Query: 290 CRL--ICKVAVSTLSHDQMVDLLKTSSLVTVTVIPALSDGTPRR-YADLKM 337
            RL  +C   +  L  +    +L+++  V VTV+P    G PRR +++L M
Sbjct: 721 ARLLRVCGQTLPKLGPETAAQMLRSAPKVCVTVLPPDESGRPRRSFSELYM 771

GTPase activator for the nuclear Ras-related regulatory protein Rap1, Rsr1 and Ran in vitro, converting it to the putatively inactive GDP-bound state. Affects cell cycle progression.

Mus musculus (taxid: 10090)

>sp|Q96FS4|SIPA1_HUMAN Signal-induced proliferation-associated protein 1 OS=Homo sapiens GN=SIPA1 PE=1 SV=1

 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 85/164 (51%), Gaps = 5/164 (3%)

Query: 170 CVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGD 229
           C+L IS +++VLV  +   +VF    + VL W  S   L LYH +GE   +      G  
Sbjct: 609 CLLGISAEALVLVAPRDGRVVFNCACRDVLAWTFSEQQLDLYHGRGEAITLRF---DGSP 665

Query: 230 RDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQG 289
              + EVV RL+  + G   +EL L R+G G+LGF V  +G VT VE    A   GL+ G
Sbjct: 666 GQAVGEVVARLQLVSRGCETRELALPRDGQGRLGFEVDAEGFVTHVERFTFAETAGLRPG 725

Query: 290 CRL--ICKVAVSTLSHDQMVDLLKTSSLVTVTVIPALSDGTPRR 331
            RL  +C   + +L  +    LL+++  V VTV+P    G PRR
Sbjct: 726 ARLLRVCGQTLPSLRPEAAAQLLRSAPKVCVTVLPPDESGRPRR 769

GTPase activator for the nuclear Ras-related regulatory proteins Rap1 and Rap2 in vitro, converting it to the putatively inactive GDP-bound state.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
328722706	1487	PREDICTED: signal-induced proliferation-	0.587	0.135	0.691	5e-76
242014376	1518	rap GTPase-activating protein, putative	0.593	0.133	0.642	1e-72
380011945	1514	PREDICTED: signal-induced proliferation-	0.593	0.134	0.668	1e-72
345495501	1481	PREDICTED: signal-induced proliferation-	0.593	0.137	0.677	1e-72
345495503	1531	PREDICTED: signal-induced proliferation-	0.593	0.132	0.677	1e-72
66506566	1571	PREDICTED: signal-induced proliferation-	0.593	0.129	0.668	2e-72
383861424	1531	PREDICTED: signal-induced proliferation-	0.593	0.132	0.677	3e-72
350409048	1567	PREDICTED: signal-induced proliferation-	0.593	0.129	0.673	3e-72
340713085	1594	PREDICTED: signal-induced proliferation-	0.593	0.127	0.673	5e-72
307197045	1430	Signal-induced proliferation-associated	0.593	0.141	0.668	1e-71

>gi|328722706|ref|XP_001943506.2| PREDICTED: signal-induced proliferation-associated 1-like protein 1-like [Acyrthosiphon pisum]

 Score =  290 bits (743), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 141/204 (69%), Positives = 163/204 (79%), Gaps = 3/204 (1%)

Query: 131 FSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLV 190
           FSSKKKERWRPR  PD  Q+GAICWQV LE+       HC+LAIS+DS+VLVEE + D++
Sbjct: 774 FSSKKKERWRPRFQPDASQRGAICWQVVLEEGNGVIGGHCLLAISSDSMVLVEENNHDIL 833

Query: 191 FVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREG-GGGDRDELMEVVVRLRAATPGSPA 249
            V P KS+LGW T TNSLR+Y+H+GE   +HM EG   GDRDELMEVVVRLRA T GS A
Sbjct: 834 LVIPCKSILGWTTQTNSLRIYYHEGECVTLHMHEGCSDGDRDELMEVVVRLRAVTQGSVA 893

Query: 250 QELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMV 307
           QEL+L RN LGQLGFHVQPDGLVT+VE  GLA++ GL+Q  RL  ICKVAV+TL+HDQMV
Sbjct: 894 QELSLHRNSLGQLGFHVQPDGLVTQVEKSGLAWEAGLRQNSRLIEICKVAVATLTHDQMV 953

Query: 308 DLLKTSSLVTVTVIPALSDGTPRR 331
           DLLKTS LVTVTVIP  +DG+PRR
Sbjct: 954 DLLKTSVLVTVTVIPPFTDGSPRR 977

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014376|ref|XP_002427867.1| rap GTPase-activating protein, putative [Pediculus humanus corporis] gi|212512336|gb|EEB15129.1| rap GTPase-activating protein, putative [Pediculus humanus corporis]

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 133/207 (64%), Positives = 164/207 (79%), Gaps = 4/207 (1%)

Query: 131 FSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLV 190
           FSSKKKER RPR   D +Q+GA  WQV LEDS    ++ C+L ISTDS+VL+EE+SR++V
Sbjct: 718 FSSKKKERSRPRFQTDVIQRGAFSWQVVLEDSGQSKMVDCILGISTDSLVLIEERSREIV 777

Query: 191 FVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQ 250
            V P +++LGW   +NS+ +YHHQGE T IHMRE  GGDRDELME++VRLR+ + G  AQ
Sbjct: 778 MVTPCQAILGWFLHSNSICIYHHQGECTMIHMRE--GGDRDELMEILVRLRSVSSGCIAQ 835

Query: 251 ELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVD 308
           EL+LKRN +GQLGFHVQPDG+VT+VE  GLA+  GL+QGCRL  ICKVAVSTL+HDQMVD
Sbjct: 836 ELSLKRNSMGQLGFHVQPDGIVTQVESTGLAWAAGLRQGCRLVEICKVAVSTLTHDQMVD 895

Query: 309 LLKTSSLVTVTVIPALSDGTPRRYADL 335
           LLKTS+ V VTVIP   DG+PR+  +L
Sbjct: 896 LLKTSASVMVTVIPPNPDGSPRKGCNL 922

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011945|ref|XP_003690052.1| PREDICTED: signal-induced proliferation-associated 1-like protein 1-like [Apis florea]

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 139/208 (66%), Positives = 162/208 (77%), Gaps = 5/208 (2%)

Query: 131 FSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLV 190
           FSSKKK   RPR+  D +Q+GAICWQV LEDS   +   C L +S D++VL+EE SR +V
Sbjct: 584 FSSKKKTAVRPRLSCDAMQRGAICWQVILEDSNQNT--DCYLGVSVDTIVLIEEHSRQIV 641

Query: 191 FVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQ 250
           FV P  SVLGW   TNSLRLY+HQGE   IH+R G  G+RDELME+V RLRA TPG+PA 
Sbjct: 642 FVTPCVSVLGWHAQTNSLRLYYHQGECITIHVR-GDYGERDELMEIVARLRAVTPGAPAT 700

Query: 251 ELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVD 308
           EL+LKRN LGQLGFHVQPDG+VT+VE MGL++Q GL+QG RL  ICKVAVSTLSHDQMVD
Sbjct: 701 ELSLKRNSLGQLGFHVQPDGVVTQVESMGLSWQAGLRQGSRLVEICKVAVSTLSHDQMVD 760

Query: 309 LLKTSSLVTVTVIPALSDGTPRRYADLK 336
           LLKTS+ VTVTVIP  +DG PRR   L+
Sbjct: 761 LLKTSAQVTVTVIPPNNDGNPRRGCTLQ 788

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495501|ref|XP_003427520.1| PREDICTED: signal-induced proliferation-associated 1-like protein 1-like isoform 2 [Nasonia vitripennis]

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 141/208 (67%), Positives = 160/208 (76%), Gaps = 5/208 (2%)

Query: 131 FSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLV 190
           FSSKKK   RPR+  D  Q+GAICWQV LEDS   +   C L IS D++VL+EE SR +V
Sbjct: 661 FSSKKKTAARPRLSCDASQRGAICWQVILEDSNQNT--DCYLGISVDTIVLIEEHSRQIV 718

Query: 191 FVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQ 250
           FVAP  SVLGW   TNSLRLYHHQGE   IH+R G  GDRDELME+V RLRA T G+PA 
Sbjct: 719 FVAPCISVLGWHAQTNSLRLYHHQGECITIHVR-GDYGDRDELMEIVARLRAVTQGAPAS 777

Query: 251 ELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVD 308
           EL+LKRN LGQLGFHVQPDG+VT+VE MG ++Q GL+QG RL  ICKVAVSTLSHDQMVD
Sbjct: 778 ELSLKRNALGQLGFHVQPDGVVTQVESMGSSWQAGLRQGSRLVEICKVAVSTLSHDQMVD 837

Query: 309 LLKTSSLVTVTVIPALSDGTPRRYADLK 336
           LLKTS+ VTVTVIP  +DG PRR   L+
Sbjct: 838 LLKTSAQVTVTVIPPSNDGLPRRGCTLQ 865

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495503|ref|XP_001603800.2| PREDICTED: signal-induced proliferation-associated 1-like protein 1-like isoform 1 [Nasonia vitripennis]

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 141/208 (67%), Positives = 160/208 (76%), Gaps = 5/208 (2%)

Query: 131 FSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLV 190
           FSSKKK   RPR+  D  Q+GAICWQV LEDS   +   C L IS D++VL+EE SR +V
Sbjct: 661 FSSKKKTAARPRLSCDASQRGAICWQVILEDSNQNT--DCYLGISVDTIVLIEEHSRQIV 718

Query: 191 FVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQ 250
           FVAP  SVLGW   TNSLRLYHHQGE   IH+R G  GDRDELME+V RLRA T G+PA 
Sbjct: 719 FVAPCISVLGWHAQTNSLRLYHHQGECITIHVR-GDYGDRDELMEIVARLRAVTQGAPAS 777

Query: 251 ELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVD 308
           EL+LKRN LGQLGFHVQPDG+VT+VE MG ++Q GL+QG RL  ICKVAVSTLSHDQMVD
Sbjct: 778 ELSLKRNALGQLGFHVQPDGVVTQVESMGSSWQAGLRQGSRLVEICKVAVSTLSHDQMVD 837

Query: 309 LLKTSSLVTVTVIPALSDGTPRRYADLK 336
           LLKTS+ VTVTVIP  +DG PRR   L+
Sbjct: 838 LLKTSAQVTVTVIPPSNDGLPRRGCTLQ 865

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66506566|ref|XP_392312.2| PREDICTED: signal-induced proliferation-associated 1-like protein 2-like [Apis mellifera]

 Score =  278 bits (712), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 139/208 (66%), Positives = 162/208 (77%), Gaps = 5/208 (2%)

Query: 131 FSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLV 190
           FSSKKK   RPR+  D +Q+GAICWQV LEDS   +   C L +S D++VL+EE SR +V
Sbjct: 645 FSSKKKTAVRPRLSCDAMQRGAICWQVILEDSNQNT--DCYLGVSIDTIVLIEEHSRQIV 702

Query: 191 FVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQ 250
           FV P  SVLGW   TNSLRLY+HQGE   IH+R G  G+RDELME+V RLRA TPG+PA 
Sbjct: 703 FVTPCVSVLGWHAQTNSLRLYYHQGECITIHVR-GDYGERDELMEIVARLRAVTPGAPAT 761

Query: 251 ELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVD 308
           EL+LKRN LGQLGFHVQPDG+VT+VE MGL++Q GL+QG RL  ICKVAVSTLSHDQMVD
Sbjct: 762 ELSLKRNSLGQLGFHVQPDGVVTQVEGMGLSWQAGLRQGSRLVEICKVAVSTLSHDQMVD 821

Query: 309 LLKTSSLVTVTVIPALSDGTPRRYADLK 336
           LLKTS+ VTVTVIP  +DG PRR   L+
Sbjct: 822 LLKTSAQVTVTVIPPNNDGNPRRGCTLQ 849

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861424|ref|XP_003706186.1| PREDICTED: signal-induced proliferation-associated 1-like protein 2-like [Megachile rotundata]

 Score =  278 bits (710), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 141/208 (67%), Positives = 159/208 (76%), Gaps = 5/208 (2%)

Query: 131 FSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLV 190
           FSSKKK   RPR+  D  Q+GAICWQV LEDS   +   C L IS D+VVL+EE SR +V
Sbjct: 625 FSSKKKTAVRPRLSCDASQRGAICWQVILEDSNQNT--DCYLGISIDTVVLIEEHSRQIV 682

Query: 191 FVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQ 250
           FV P  SVLGW   TNSLRLY+HQGE   IH+R G  GDRDELME+V RLRA T G+PA 
Sbjct: 683 FVTPCASVLGWHAQTNSLRLYYHQGECITIHVR-GDYGDRDELMEIVARLRAVTQGAPAT 741

Query: 251 ELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVD 308
           E +LKRN LGQLGFHVQPDGLVT+VE MGL++Q GL+QG RL  ICKVAVSTLSHDQMVD
Sbjct: 742 EFSLKRNSLGQLGFHVQPDGLVTQVESMGLSWQAGLRQGSRLVEICKVAVSTLSHDQMVD 801

Query: 309 LLKTSSLVTVTVIPALSDGTPRRYADLK 336
           LLKTS+ VTVTVIP  +DG PRR   L+
Sbjct: 802 LLKTSAQVTVTVIPPNNDGNPRRGCTLQ 829

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409048|ref|XP_003488592.1| PREDICTED: signal-induced proliferation-associated 1-like protein 2-like [Bombus impatiens]

 Score =  278 bits (710), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 140/208 (67%), Positives = 161/208 (77%), Gaps = 5/208 (2%)

Query: 131 FSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLV 190
           FSSKKK   RPR+  D LQ+GAICWQV LEDS   +     L IS D++VL+EE SR +V
Sbjct: 630 FSSKKKTAVRPRLSCDALQRGAICWQVILEDSNQNT--DSYLGISVDTIVLIEEHSRQIV 687

Query: 191 FVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQ 250
           FV P  SVLGW   TNSLRLY+HQGE   IH+R G  G+RDELME+V RLRA TPGSPA 
Sbjct: 688 FVTPCASVLGWHAQTNSLRLYYHQGECITIHVR-GDYGERDELMEIVARLRAVTPGSPAT 746

Query: 251 ELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVD 308
           EL+LKRN LGQLGFHVQPDG+VT+VE +GL++Q GL+QG RL  ICKVAVSTLSHDQMVD
Sbjct: 747 ELSLKRNSLGQLGFHVQPDGVVTQVESLGLSWQAGLRQGSRLVEICKVAVSTLSHDQMVD 806

Query: 309 LLKTSSLVTVTVIPALSDGTPRRYADLK 336
           LLKTS+ VTVTVIP  +DG PRR   L+
Sbjct: 807 LLKTSAQVTVTVIPPNTDGNPRRGCTLQ 834

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713085|ref|XP_003395080.1| PREDICTED: signal-induced proliferation-associated 1-like protein 2-like [Bombus terrestris]

 Score =  277 bits (709), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 140/208 (67%), Positives = 161/208 (77%), Gaps = 5/208 (2%)

Query: 131 FSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLV 190
           FSSKKK   RPR+  D LQ+GAICWQV LEDS   +     L IS D++VL+EE SR +V
Sbjct: 658 FSSKKKTAVRPRLSCDALQRGAICWQVILEDSNQNT--DSYLGISIDTIVLIEEHSRQIV 715

Query: 191 FVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQ 250
           FV P  SVLGW   TNSLRLY+HQGE   IH+R G  G+RDELME+V RLRA TPGSPA 
Sbjct: 716 FVTPCASVLGWHAQTNSLRLYYHQGECITIHVR-GDYGERDELMEIVARLRAVTPGSPAT 774

Query: 251 ELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVD 308
           EL+LKRN LGQLGFHVQPDG+VT+VE +GL++Q GL+QG RL  ICKVAVSTLSHDQMVD
Sbjct: 775 ELSLKRNSLGQLGFHVQPDGVVTQVESLGLSWQAGLRQGSRLVEICKVAVSTLSHDQMVD 834

Query: 309 LLKTSSLVTVTVIPALSDGTPRRYADLK 336
           LLKTS+ VTVTVIP  +DG PRR   L+
Sbjct: 835 LLKTSAQVTVTVIPPNTDGNPRRGCTLQ 862

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197045|gb|EFN78417.1| Signal-induced proliferation-associated 1-like protein 2 [Harpegnathos saltator]

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 139/208 (66%), Positives = 159/208 (76%), Gaps = 5/208 (2%)

Query: 131 FSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLV 190
           FSSKKK   RPR+  D  Q+GAICWQV LEDS   +   C L IS D++VL+EE SR +V
Sbjct: 488 FSSKKKTTVRPRLSCDASQRGAICWQVILEDSNQNT--DCYLGISIDTIVLIEEHSRQIV 545

Query: 191 FVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQ 250
           FV P  SVLGW   TNSLRLYHHQGE   IH+R G  G+RDELME+V RLRA T G+PA 
Sbjct: 546 FVTPCVSVLGWHAQTNSLRLYHHQGECITIHVR-GDYGERDELMEIVARLRAVTQGAPAS 604

Query: 251 ELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVD 308
           EL+LKRN LGQLGFHVQPDG+VT+VE MGL++Q GL+Q  RL  ICKVAVSTLSHDQMVD
Sbjct: 605 ELSLKRNSLGQLGFHVQPDGVVTQVESMGLSWQAGLRQASRLVEICKVAVSTLSHDQMVD 664

Query: 309 LLKTSSLVTVTVIPALSDGTPRRYADLK 336
           LLKTS+ VTVTVIP  +DG PRR   L+
Sbjct: 665 LLKTSAQVTVTVIPPNNDGNPRRGCSLQ 692

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
ZFIN|ZDB-GENE-050208-66	1672	im:7137555 "im:7137555" [Danio	0.593	0.121	0.464	4.7e-53
ZFIN|ZDB-GENE-030131-9909	1794	sipa1l1 "signal-induced prolif	0.590	0.112	0.461	2.5e-52
UNIPROTKB|E1BQZ3	1786	SIPA1L1 "Uncharacterized prote	0.590	0.113	0.425	3.2e-52
UNIPROTKB|F1S3L7	1782	SIPA1L1 "Uncharacterized prote	0.587	0.112	0.420	4.1e-52
UNIPROTKB|F1MXV4	1808	SIPA1L1 "Uncharacterized prote	0.587	0.111	0.420	4.3e-52
UNIPROTKB|J3KP19	1782	SIPA1L1 "Signal-induced prolif	0.587	0.112	0.434	5.1e-52
UNIPROTKB|O43166	1804	SIPA1L1 "Signal-induced prolif	0.587	0.111	0.434	5.3e-52
UNIPROTKB|F1LS65	1323	Sipa1l1 "Signal-induced prolif	0.587	0.151	0.425	1.1e-51
RGD|708497	1822	Sipa1l1 "signal-induced prolif	0.587	0.110	0.429	1.5e-51
MGI|MGI:2443679	1782	Sipa1l1 "signal-induced prolif	0.587	0.112	0.425	2.2e-51

ZFIN|ZDB-GENE-050208-66 im:7137555 "im:7137555" [Danio rerio (taxid:7955)]

 Score = 443 (161.0 bits), Expect = 4.7e-53, Sum P(2) = 4.7e-53
 Identities = 98/211 (46%), Positives = 136/211 (64%)

Query:   133 SKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLVFV 192
             +K+KER RPR        GA+ W V   DS   S + C+LAIS + VVL+EE SRD+VF 
Sbjct:   797 AKRKERSRPRNNAHLYSTGAVTWSVVARDSCQSSDIGCLLAISREFVVLIEEASRDVVFN 856

Query:   193 APAKSVLGWATSTN--SLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQ 250
                K V+GW++S+    ++L++ +G+     +++G     +E+ EVV RL   T G    
Sbjct:   857 CYCKDVIGWSSSSTVGRVKLFYERGDCAVFSVQDGCP---EEVREVVQRLEIVTRGIETL 913

Query:   251 ELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVD 308
             E+TL+RN LGQLGFHV  +G+V +VE  G A+Q GL+ GCRL  ICKVAV  L+H+QM+D
Sbjct:   914 EMTLRRNALGQLGFHVNFEGVVADVEPFGFAWQAGLRPGCRLVEICKVAVGNLTHEQMID 973

Query:   309 LLKTSSLVTVTVIPALSDGTPRRYADLKMWR 339
              L+TS+ VTV VI    DGTPRR A  +++R
Sbjct:   974 YLRTSTPVTVVVIQPHEDGTPRRGAS-ELYR 1003

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

ZFIN|ZDB-GENE-030131-9909 sipa1l1 "signal-induced proliferation-associated 1 like 1" [Danio rerio (taxid:7955)]

 Score = 438 (159.2 bits), Expect = 2.5e-52, Sum P(2) = 2.5e-52
 Identities = 96/208 (46%), Positives = 128/208 (61%)

Query:   127 PATLFSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQS 186
             P    + K+KE+ RP +  +    GAI W V  ED   G  +  +LAIS D +VLV+ ++
Sbjct:   847 PFISLAHKRKEKTRPYLGAELRSPGAITWPVYAEDHGAGGELEALLAISNDFLVLVDPEA 906

Query:   187 RDLVFVAPAKSVLGWAT-STNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATP 245
             + +VF    + V+GW   S  S+++Y+ +GE   I +R       D   EVV RL   T 
Sbjct:   907 KAVVFNCAVRDVIGWTLGSPASMKIYYERGE--NISLRSMNNNTED-FREVVKRLEHLTK 963

Query:   246 GSPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSH 303
             G    E+TL+RNGLGQLGFHV  +G+V EVE  G A+Q GL+QG RL  ICKVAV+TLSH
Sbjct:   964 GCETSEMTLRRNGLGQLGFHVNYEGIVAEVEPYGYAWQAGLRQGSRLVEICKVAVATLSH 1023

Query:   304 DQMVDLLKTSSLVTVTVIPALSDGTPRR 331
             +QM+DLL+TS  V V +IP   D TPRR
Sbjct:  1024 EQMIDLLRTSVTVKVVIIPPHEDATPRR 1051

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|E1BQZ3 SIPA1L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 440 (159.9 bits), Expect = 3.2e-52, Sum P(2) = 3.2e-52
 Identities = 88/207 (42%), Positives = 131/207 (63%)

Query:   127 PATLFSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQS 186
             P    +SKKKE+ +P    +    GAI W V  +D   G  + C+L +S + VVL+E+ +
Sbjct:   833 PFISLASKKKEKSKPYPGAEIYSSGAIVWSVHAKDYSKGMEIDCLLGVSNEFVVLIEQDT 892

Query:   187 RDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPG 246
             + +VF    + V+GW ++  ++++++ +GE   +   E    + D++ E+V RL   T G
Sbjct:   893 KSVVFNCSCRDVIGWTSTDTNIKIFYERGECVSL---ESFISNIDDIKEIVKRLELVTKG 949

Query:   247 SPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHD 304
                 E+TL+RNGLGQLGFHV  +G+V +VE  G A+Q GL+QG RL  ICKVAV+TLSH+
Sbjct:   950 CETVEMTLRRNGLGQLGFHVNYEGIVADVEPYGYAWQAGLRQGSRLVEICKVAVATLSHE 1009

Query:   305 QMVDLLKTSSLVTVTVIPALSDGTPRR 331
             QM+DLL+TS  V V ++P   D TPRR
Sbjct:  1010 QMIDLLRTSVTVKVVIVPPYEDCTPRR 1036

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0032317 "regulation of Rap GTPase activity" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

GO:0050770 "regulation of axonogenesis" evidence=IEA

UNIPROTKB|F1S3L7 SIPA1L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 429 (156.1 bits), Expect = 4.1e-52, Sum P(2) = 4.1e-52
 Identities = 87/207 (42%), Positives = 132/207 (63%)

Query:   127 PATLFSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQS 186
             P    +SKKKE+ +P    +    GAI W V  +D      + C+L +S + +VL+E+++
Sbjct:   833 PFISLASKKKEKSKPYPGAELSSMGAIVWAVRAKDYNKAMEIDCLLGVSNEFIVLIEQET 892

Query:   187 RDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPG 246
             + +VF    + V+GW ++  SL++++ +GE   +        + +E+ E+V RL+  + G
Sbjct:   893 KSVVFNCSCRDVIGWTSTDTSLKIFYERGECVSVESFL----NNEEIKEIVKRLQFVSKG 948

Query:   247 SPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHD 304
               + E+TL+RNGLGQLGFHV  +G+V +VE  G A+Q GL+QG RL  ICKVAV+TLSH+
Sbjct:   949 CESVEMTLRRNGLGQLGFHVNYEGIVADVEPYGYAWQAGLRQGSRLVEICKVAVATLSHE 1008

Query:   305 QMVDLLKTSSLVTVTVIPALSDGTPRR 331
             QM+DLL+TS  V V +IP   D TPRR
Sbjct:  1009 QMIDLLRTSVTVKVVIIPPHDDCTPRR 1035

GO:0050770 "regulation of axonogenesis" evidence=IEA

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0032317 "regulation of Rap GTPase activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

UNIPROTKB|F1MXV4 SIPA1L1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 430 (156.4 bits), Expect = 4.3e-52, Sum P(2) = 4.3e-52
 Identities = 87/207 (42%), Positives = 133/207 (64%)

Query:   127 PATLFSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQS 186
             P    +SKKKE+ +P    +    GAI W V  +D      + C+L +S++ +VL+E+++
Sbjct:   833 PFISLASKKKEKSKPYPGAELSSMGAIVWAVRAKDYNKAMEIDCLLGVSSEFIVLIEQET 892

Query:   187 RDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPG 246
             + +VF    + V+GW ++  SL++++ +GE   +        + D++ E+V RL+  + G
Sbjct:   893 KSVVFNCSCRDVIGWTSTDASLKIFYERGECVSVESFV----NNDDIKEIVKRLQFVSKG 948

Query:   247 SPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHD 304
               + E+TL+RNGLGQLGFHV  +G+V +VE  G A+Q GL+QG RL  ICKVAV+TLSH+
Sbjct:   949 CESVEMTLRRNGLGQLGFHVNYEGIVADVEPYGYAWQAGLRQGSRLVEICKVAVATLSHE 1008

Query:   305 QMVDLLKTSSLVTVTVIPALSDGTPRR 331
             QM+DLL+TS  V V +IP   D TPRR
Sbjct:  1009 QMIDLLRTSVTVKVVIIPPHDDCTPRR 1035

GO:0050770 "regulation of axonogenesis" evidence=IEA

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0032317 "regulation of Rap GTPase activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

UNIPROTKB|J3KP19 SIPA1L1 "Signal-induced proliferation-associated 1-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 438 (159.2 bits), Expect = 5.1e-52, Sum P(2) = 5.1e-52
 Identities = 90/207 (43%), Positives = 133/207 (64%)

Query:   127 PATLFSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQS 186
             P    +SKKKE+ +P    +    GAI W V  ED      + C+L IS + +VL+E+++
Sbjct:   833 PFISLASKKKEKSKPYPGAELSSMGAIVWAVRAEDYNKAMELDCLLGISNEFIVLIEQET 892

Query:   187 RDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPG 246
             + +VF    + V+GW ++  SL++++ +GE   +    G   + +E+ E+V RL+  + G
Sbjct:   893 KSVVFNCSCRDVIGWTSTDTSLKIFYERGECVSV----GSFINIEEIKEIVKRLQFVSKG 948

Query:   247 SPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHD 304
               + E+TL+RNGLGQLGFHV  +G+V +VE  G A+Q GL+QG RL  ICKVAV+TLSH+
Sbjct:   949 CESVEMTLRRNGLGQLGFHVNYEGIVADVEPYGYAWQAGLRQGSRLVEICKVAVATLSHE 1008

Query:   305 QMVDLLKTSSLVTVTVIPALSDGTPRR 331
             QM+DLL+TS  V V +IP   D TPRR
Sbjct:  1009 QMIDLLRTSVTVKVVIIPPHDDCTPRR 1035

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|O43166 SIPA1L1 "Signal-induced proliferation-associated 1-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 438 (159.2 bits), Expect = 5.3e-52, Sum P(2) = 5.3e-52
 Identities = 90/207 (43%), Positives = 133/207 (64%)

Query:   127 PATLFSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQS 186
             P    +SKKKE+ +P    +    GAI W V  ED      + C+L IS + +VL+E+++
Sbjct:   833 PFISLASKKKEKSKPYPGAELSSMGAIVWAVRAEDYNKAMELDCLLGISNEFIVLIEQET 892

Query:   187 RDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPG 246
             + +VF    + V+GW ++  SL++++ +GE   +    G   + +E+ E+V RL+  + G
Sbjct:   893 KSVVFNCSCRDVIGWTSTDTSLKIFYERGECVSV----GSFINIEEIKEIVKRLQFVSKG 948

Query:   247 SPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHD 304
               + E+TL+RNGLGQLGFHV  +G+V +VE  G A+Q GL+QG RL  ICKVAV+TLSH+
Sbjct:   949 CESVEMTLRRNGLGQLGFHVNYEGIVADVEPYGYAWQAGLRQGSRLVEICKVAVATLSHE 1008

Query:   305 QMVDLLKTSSLVTVTVIPALSDGTPRR 331
             QM+DLL+TS  V V +IP   D TPRR
Sbjct:  1009 QMIDLLRTSVTVKVVIIPPHDDCTPRR 1035

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0014069 "postsynaptic density" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0031532 "actin cytoskeleton reorganization" evidence=ISS

GO:0032861 "activation of Rap GTPase activity" evidence=ISS

GO:0061001 "regulation of dendritic spine morphogenesis" evidence=ISS

GO:0043197 "dendritic spine" evidence=ISS

GO:0032317 "regulation of Rap GTPase activity" evidence=ISS

GO:0048167 "regulation of synaptic plasticity" evidence=ISS

GO:0050770 "regulation of axonogenesis" evidence=ISS

GO:0048013 "ephrin receptor signaling pathway" evidence=ISS

UNIPROTKB|F1LS65 Sipa1l1 "Signal-induced proliferation-associated 1-like protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 429 (156.1 bits), Expect = 1.1e-51, Sum P(2) = 1.1e-51
 Identities = 88/207 (42%), Positives = 131/207 (63%)

Query:   127 PATLFSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQS 186
             P    +SKKKE+ +P    +    GAI W V  +D        C+L IS + +VL+E+++
Sbjct:   373 PFISLASKKKEKSKPYPGAELSSMGAIVWAVRAKDYNKAMEFDCLLGISNEFIVLIEQET 432

Query:   187 RDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPG 246
             + +VF    + V+GW +S +SL++++ +GE   +          +++ E+V RL+  + G
Sbjct:   433 KSVVFNCSCRDVIGWTSSDSSLKIFYERGECISVESFMSS----EDIKEIVKRLQFVSKG 488

Query:   247 SPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHD 304
               + E+TL+RNGLGQLGFHV  +G+V +VE  G A+Q GL+QG RL  ICKVAV+TLSH+
Sbjct:   489 CESVEMTLRRNGLGQLGFHVNYEGIVADVEPYGYAWQAGLRQGSRLVEICKVAVATLSHE 548

Query:   305 QMVDLLKTSSLVTVTVIPALSDGTPRR 331
             QM+DLL+TS  V V +IP   D TPRR
Sbjct:   549 QMIDLLRTSVTVKVVIIPPHDDCTPRR 575

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

RGD|708497 Sipa1l1 "signal-induced proliferation-associated 1 like 1" [Rattus norvegicus (taxid:10116)]

 Score = 432 (157.1 bits), Expect = 1.5e-51, Sum P(2) = 1.5e-51
 Identities = 89/207 (42%), Positives = 131/207 (63%)

Query:   127 PATLFSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQS 186
             P    +SKKKE+ +P    +    GAI W V  +D        C+L IS + +VL+E+++
Sbjct:   872 PFISLASKKKEKSKPYPGAELSSMGAIVWAVRAKDYNKAMEFDCLLGISNEFIVLIEQET 931

Query:   187 RDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPG 246
             + +VF    + V+GW +S +SL++++ +GE   +          +++ E+V RL+  + G
Sbjct:   932 KSVVFNCSCRDVIGWTSSDSSLKIFYERGECISVESFMSS----EDIKEIVKRLQFVSKG 987

Query:   247 SPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHD 304
               + E+TL+RNGLGQLGFHV  +G+V +VE  G A+Q GLKQG RL  ICKVAV+TLSH+
Sbjct:   988 CESVEMTLRRNGLGQLGFHVNYEGIVADVEPYGYAWQAGLKQGSRLVEICKVAVATLSHE 1047

Query:   305 QMVDLLKTSSLVTVTVIPALSDGTPRR 331
             QM+DLL+TS  V V +IP   D TPRR
Sbjct:  1048 QMIDLLRTSVTVKVVIIPPHDDCTPRR 1074

GO:0005096 "GTPase activator activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0030054 "cell junction" evidence=IEA

GO:0031532 "actin cytoskeleton reorganization" evidence=IDA

GO:0032317 "regulation of Rap GTPase activity" evidence=ISO;ISS;IDA

GO:0032861 "activation of Rap GTPase activity" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043197 "dendritic spine" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=ISO

GO:0048013 "ephrin receptor signaling pathway" evidence=ISO;ISS

GO:0048167 "regulation of synaptic plasticity" evidence=IDA;IMP

GO:0048814 "regulation of dendrite morphogenesis" evidence=IMP

GO:0050770 "regulation of axonogenesis" evidence=ISO;ISS

GO:0051015 "actin filament binding" evidence=IDA

GO:0061001 "regulation of dendritic spine morphogenesis" evidence=IDA

MGI|MGI:2443679 Sipa1l1 "signal-induced proliferation-associated 1 like 1" [Mus musculus (taxid:10090)]

 Score = 430 (156.4 bits), Expect = 2.2e-51, Sum P(2) = 2.2e-51
 Identities = 88/207 (42%), Positives = 131/207 (63%)

Query:   127 PATLFSSKKKERWRPRIIPDTLQKGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQS 186
             P    +SKKKE+ +P    +    GAI W V  +D        C+L IS++ +VL+E+++
Sbjct:   833 PFISLASKKKEKSKPYPGAELSSMGAIVWAVRAKDYNKAMEFDCLLGISSEFIVLIEQET 892

Query:   187 RDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPG 246
             + + F    + V+GW +S  SL++++ +GE   +     G    +++ E+V RL+  + G
Sbjct:   893 KSVAFNCSCRDVIGWTSSDTSLKIFYERGECVSVESFISG----EDIKEIVRRLQFVSKG 948

Query:   247 SPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHD 304
               + E+TL+RNGLGQLGFHV  +G+V +VE  G A+Q GL+QG RL  ICKVAV+TLSH+
Sbjct:   949 CESVEMTLRRNGLGQLGFHVNYEGIVADVEPYGYAWQAGLRQGSRLVEICKVAVATLSHE 1008

Query:   305 QMVDLLKTSSLVTVTVIPALSDGTPRR 331
             QM+DLL+TS  V V +IP   D TPRR
Sbjct:  1009 QMIDLLRTSVTVKVVIIPPHDDCTPRR 1035

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0014069 "postsynaptic density" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0031532 "actin cytoskeleton reorganization" evidence=ISO

GO:0032317 "regulation of Rap GTPase activity" evidence=ISO;IMP

GO:0032861 "activation of Rap GTPase activity" evidence=ISO

GO:0043005 "neuron projection" evidence=IEA

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043197 "dendritic spine" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IPI

GO:0048013 "ephrin receptor signaling pathway" evidence=IMP

GO:0048167 "regulation of synaptic plasticity" evidence=ISO

GO:0048814 "regulation of dendrite morphogenesis" evidence=ISO

GO:0050770 "regulation of axonogenesis" evidence=IDA

GO:0051015 "actin filament binding" evidence=ISO

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0061001 "regulation of dendritic spine morphogenesis" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	342
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	5e-07
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	1e-05
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	4e-05

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 46.4 bits (111), Expect = 5e-07
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)

Query: 251 ELTLKRNGLGQLGFHVQPDG------LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLS 302
            +TL+++  G LGF ++          V+ VE  G A + GL+ G R+  +  V+V  L+
Sbjct: 3   TVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLT 62

Query: 303 HDQMVDLLKTSSL-VTVTVI 321
           H++ V+LLK S   VT+TV 
Sbjct: 63  HEEAVELLKNSGDEVTLTVR 82

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 10/82 (12%)

Query: 250 QELTLKRNGLGQLGFHVQPDG------LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTL 301
           + + L++ G G LGF +          +V+ V     A + GL+ G  +  +   +V  L
Sbjct: 3   RLVELEKGG-GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLRVGDVILEVNGTSVEGL 61

Query: 302 SHDQMVDLLK-TSSLVTVTVIP 322
           +H + VDLLK     VT+TV+ 
Sbjct: 62  THLEAVDLLKKAGGKVTLTVLR 83

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 9/80 (11%)

Query: 251 ELTLKRNGLGQLGFHVQPDG------LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLS 302
           E+TL+++G G LGF +           V+EV   G A   GL++G R+  I    +  LS
Sbjct: 1   EVTLEKSGRGGLGFSLVGGSDGDPGIFVSEVLPGGAAEAGGLQEGDRILSINGQDLENLS 60

Query: 303 HDQMVDLLK-TSSLVTVTVI 321
           HD+ V  LK +   VT+T++
Sbjct: 61  HDEAVLALKGSGGEVTLTIL 80

PDZ domains are found in diverse signaling proteins. Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	342
KOG3686|consensus	740		100.0
KOG3605|consensus	829		99.55
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.28
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.98
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	98.97
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	98.85
KOG3209|consensus	984		98.51
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	98.43
KOG3686|consensus	740		98.4
KOG3550|consensus	207		98.12
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	98.07
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	97.89
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	97.86
KOG3553|consensus	124		97.81
PRK11186	667	carboxy-terminal protease; Provisional	97.75
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	97.71
KOG3549|consensus	505		97.63
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	97.54
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	97.46
PLN00049	389	carboxyl-terminal processing protease; Provisional	97.45
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	97.42
KOG0606|consensus	1205		97.36
PRK10779	449	zinc metallopeptidase RseP; Provisional	97.28
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	97.12
KOG3552|consensus	1298		97.1
PRK10139	455	serine endoprotease; Provisional	97.09
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	96.96
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	96.95
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	96.93
KOG3542|consensus	1283		96.9
PRK10942	473	serine endoprotease; Provisional	96.71
PRK10942	473	serine endoprotease; Provisional	96.41
KOG3209|consensus	984		96.38
PRK10139	455	serine endoprotease; Provisional	96.34
PRK10779	449	zinc metallopeptidase RseP; Provisional	96.29
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	96.06
PRK10898	353	serine endoprotease; Provisional	96.02
KOG1892|consensus	1629		95.96
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	95.78
KOG0609|consensus	542		95.64
COG3975	558	Predicted protease with the C-terminal PDZ domain	95.63
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	95.57
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	95.41
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	94.79
KOG3580|consensus	1027		94.79
KOG3606|consensus	358		94.5
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	93.65
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	92.58
KOG3605|consensus	829		91.9
KOG3834|consensus	462		91.44
KOG3551|consensus	506		90.31
KOG3571|consensus	626		88.56
PF00640	140	PID: Phosphotyrosine interaction domain (PTB/PID)	85.95
PF02174	100	IRS: PTB domain (IRS-1 type); InterPro: IPR002404	84.57
KOG3129|consensus	231		84.3
KOG3580|consensus	1027		83.81
PF12812	78	PDZ_1: PDZ-like domain	83.5
KOG3938|consensus	334		81.6
PRK09681	276	putative type II secretion protein GspC; Provision	80.74

>KOG3686|consensus

Probab=100.00  E-value=1.8e-37  Score=321.88  Aligned_cols=196  Identities=22%  Similarity=0.246  Sum_probs=189.5

Q ss_pred             CeeeeccCcccccCCCCCCccccceeeEEEEEeccCC--CCeeeeeeeeeccceEEEEEccCCcEEEeeeccceeeeccc
Q psy6995         127 PATLFSSKKKERWRPRIIPDTLQKGAICWQVSLEDSK--TGSLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATS  204 (342)
Q Consensus       127 p~~sl~~KkKEr~kpr~~~e~~s~GAl~W~V~v~D~s--~~~~i~ClLGIS~e~lVLIe~~s~~VVFncpc~dVIGWt~s  204 (342)
                      ++|++++++|++.|++++++.++. |++|.|.++|+.  .+++++|++|||++++|++++.++.|+|||+|+||||||..
T Consensus       484 s~~~~~~~~p~~~~~~~~a~~~~~-a~~~~vk~~~~~~~~s~~~~c~~g~~~~~~v~~s~~~~~v~fn~~~~~ii~~tt~  562 (740)
T KOG3686|consen  484 SMISLGSRQPQPLKTSSAAHDHLP-AFTWNVKLLEWRSLVSQEHACFPGISPHLDVLSSREVHKVAFNEDRADILSWTTA  562 (740)
T ss_pred             hhhhhcCCCCCcCCCCCcccccch-hhhhhhhhhhhccccccccccccCcCccceeeecccccceEEecccccccccccc
Confidence            568899999999999999999888 999999999999  89999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeecCceEEEEecCCCCCChhhHHHHHHhhhccCCCCCceEEEeecCCCCCCCeEEcCCceEEEEcccchhhhh
Q psy6995         205 TNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQE  284 (342)
Q Consensus       205 ~~~LkIyY~rGE~i~l~~~e~~~~~~edl~EIV~RL~~VT~Gcet~El~LrR~~~gqLGFhV~~EG~Vt~VE~~g~Ae~A  284 (342)
                      +.+|++||.|||++..++...              |+.+|+|||+++++++|++.+++||||+.||+|++||++++||.|
T Consensus       563 ~~sl~~~~~~~~~~~~~~~~~--------------l~~~t~G~e~~~~~~~r~~~~~~~fhv~~e~~~~~~e~~~~~~~a  628 (740)
T KOG3686|consen  563 SASLQFDSFRSELGWEVKVGR--------------LDGYTGGLEVETRALYRADAEAVGFHVSTEGNGDVQEKWKHAGNA  628 (740)
T ss_pred             cccceeeeccccceeeeeecc--------------chhhccCceeeeeeecccccccccceecccccceeeccccccccc
Confidence            999999999999999987662              999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEE--eecccccCCCHHHHHHHHhccCcEEEEEeCCCCCCCCCcCCCccccc
Q psy6995         285 GLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTVTVIPALSDGTPRRYADLKMWR  339 (342)
Q Consensus       285 GLR~G~RL--Icg~sV~~lsHeq~vdlLrts~~V~v~VipP~~dg~PRRgc~~~~~~  339 (342)
                      ||  |.|+  +|+++++|++|+++.+||+++..|.+.++||+++++||++|.+.++-
T Consensus       629 ~l--g~~~~~~~~~~~~Tla~~~~~~l~~~s~~v~~~~~~~~d~~~~r~~~~e~~~l  683 (740)
T KOG3686|consen  629 EL--GSRENTRKKYTRETLATKFCDVLLVLSQVVDKMVRPPVDTASPREFCPEFDGL  683 (740)
T ss_pred             cc--cceeeeehhhhhhhhhhhhhhhhhhhhhccceeecCcccccchhhcccccCcc
Confidence            99  9999  99999999999999999999999999999999999999999999873

>KOG3605|consensus

Probab=99.55  E-value=1.7e-15  Score=157.24  Aligned_cols=77  Identities=30%  Similarity=0.562  Sum_probs=69.9

Q ss_pred             CC-CceEEEeecCCC-CCCCeEEcCCceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEE
Q psy6995         246 GS-PAQELTLKRNGL-GQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTV  320 (342)
Q Consensus       246 Gc-et~El~LrR~~~-gqLGFhV~~EG~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~V  320 (342)
                      -| +.+|+.|+|+.. +||||+|| +|+||++.|+|+||++|+|+||||  |||++|++.+|+.||.||.+++ .++...
T Consensus       733 ~cpPV~~V~I~RPd~kyQLGFSVQ-NGiICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIhMKT  811 (829)
T KOG3605|consen  733 SCPPVTTVLIRRPDLRYQLGFSVQ-NGIICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIHMKT  811 (829)
T ss_pred             cCCCceEEEeecccchhhccceee-CcEeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhhhhhhhhc
Confidence            57 457888999977 99999998 999999999999999999999999  9999999999999999999887 677777


Q ss_pred             eCC
Q psy6995         321 IPA  323 (342)
Q Consensus       321 ipP  323 (342)
                      +|.
T Consensus       812 MPa  814 (829)
T KOG3605|consen  812 MPA  814 (829)
T ss_pred             chH
Confidence            664

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.28  E-value=1.3e-11  Score=94.10  Aligned_cols=70  Identities=41%  Similarity=0.574  Sum_probs=62.5

Q ss_pred             EEEeecCCCCCCCeEEcC-------CceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEE
Q psy6995         251 ELTLKRNGLGQLGFHVQP-------DGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTV  320 (342)
Q Consensus       251 El~LrR~~~gqLGFhV~~-------EG~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~V  320 (342)
                      +++|.|+..+.|||.+..       .-+|++|.++|+|+++||++||+|  |||+++.+++|++++++|+.+. .|+|+|
T Consensus         1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V   80 (81)
T PF00595_consen    1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTV   80 (81)
T ss_dssp             EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEE
T ss_pred             CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEE
Confidence            477889877999999964       239999999999999999999999  9999999999999999999766 677765

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.98  E-value=4.5e-09  Score=78.25  Aligned_cols=74  Identities=35%  Similarity=0.502  Sum_probs=64.4

Q ss_pred             ceEEEeecCCCCCCCeEEcC-----Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEE
Q psy6995         249 AQELTLKRNGLGQLGFHVQP-----DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVT  319 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~-----EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~  319 (342)
                      ..++.+.++. +.|||.++.     .| +|+.|.++++|+++|||+||+|  |||+++.++++.+++.+++... .+.|.
T Consensus         2 ~~~~~~~~~~-~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~   80 (85)
T smart00228        2 PRLVELEKGG-GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLT   80 (85)
T ss_pred             cEEEEEEECC-CcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            4567788888 999999986     35 8999999999999999999999  9999999999999999998654 67777


Q ss_pred             EeCC
Q psy6995         320 VIPA  323 (342)
Q Consensus       320 VipP  323 (342)
                      +..+
T Consensus        81 i~r~   84 (85)
T smart00228       81 VLRG   84 (85)
T ss_pred             EEeC
Confidence            7654

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=98.97  E-value=4.2e-09  Score=78.83  Aligned_cols=72  Identities=39%  Similarity=0.567  Sum_probs=63.2

Q ss_pred             ceEEEeecCCCCCCCeEEcCC------ceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEE
Q psy6995         249 AQELTLKRNGLGQLGFHVQPD------GLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVT  319 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~E------G~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~  319 (342)
                      ++++.+.|+..+.|||.+++.      -+|++|.++++|+++||++||+|  |||+++.+++++++.++|+... .+.++
T Consensus         1 ~~~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~   80 (82)
T cd00992           1 VRTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLT   80 (82)
T ss_pred             CEEEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEE
Confidence            357889998889999999865      37999999999999999999999  9999999999999999999755 55555


Q ss_pred             E
Q psy6995         320 V  320 (342)
Q Consensus       320 V  320 (342)
                      +
T Consensus        81 v   81 (82)
T cd00992          81 V   81 (82)
T ss_pred             E
Confidence            4

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=98.85  E-value=1.2e-08  Score=74.86  Aligned_cols=60  Identities=33%  Similarity=0.483  Sum_probs=53.6

Q ss_pred             CCCeEEcCC---c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc--CcEEEEE
Q psy6995         261 QLGFHVQPD---G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS--SLVTVTV  320 (342)
Q Consensus       261 qLGFhV~~E---G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts--~~V~v~V  320 (342)
                      .+||.+...   | +|+.|.++++|+.||||+||+|  |||+++...+|+++.++|+..  ..|+|++
T Consensus         2 ~~G~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136           2 GLGFSIRGGTEGGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             CccEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            689999765   3 8999999999999999999999  999999999999999999976  3677765

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>KOG3209|consensus

Probab=98.51  E-value=1.7e-07  Score=99.44  Aligned_cols=83  Identities=29%  Similarity=0.462  Sum_probs=73.4

Q ss_pred             ceEEEeecCCCCCCCeEEc-----CCceEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEE
Q psy6995         249 AQELTLKRNGLGQLGFHVQ-----PDGLVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVT  319 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~-----~EG~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~  319 (342)
                      +-.+.|.|+--.+.||-+-     .+--|-.+.++++|.++| |++||||  |||+++..|+|.++|.||+.+. .|+|+
T Consensus       754 ~yDV~lhR~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLt  833 (984)
T KOG3209|consen  754 PYDVVLHRKENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLT  833 (984)
T ss_pred             CeeeEEecccCCceeEEEEecccCCCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEE
Confidence            7789999998899999882     222378899999999987 9999999  9999999999999999999777 89999


Q ss_pred             EeCCCCCCCCCc
Q psy6995         320 VIPALSDGTPRR  331 (342)
Q Consensus       320 VipP~~dg~PRR  331 (342)
                      +|||+|.+.|-.
T Consensus       834 Iip~ee~~~~~~  845 (984)
T KOG3209|consen  834 IIPPEEAGPPTS  845 (984)
T ss_pred             EcChhccCCCCC
Confidence            999999997753

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=98.43  E-value=6.4e-07  Score=68.00  Aligned_cols=64  Identities=30%  Similarity=0.411  Sum_probs=54.4

Q ss_pred             CCCCeEEcCC--c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc--CcEEEEEeCC
Q psy6995         260 GQLGFHVQPD--G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS--SLVTVTVIPA  323 (342)
Q Consensus       260 gqLGFhV~~E--G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts--~~V~v~VipP  323 (342)
                      +.|||.+..+  | +|..|.++++|+++||++||+|  |||+.+...+|+++.++|+..  ..+.+++..+
T Consensus         2 ~~lG~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~   72 (85)
T cd00988           2 GGIGLELKYDDGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG   72 (85)
T ss_pred             eEEEEEEEEcCCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence            4678888643  2 8889999999999999999999  999999999999999999743  3678888765

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3686|consensus

Probab=98.40  E-value=1.8e-07  Score=99.37  Aligned_cols=47  Identities=36%  Similarity=0.516  Sum_probs=37.7

Q ss_pred             cCCccccccccccCCCCceEEEEEEeeecccccccceeeEEEEEEecccccccee
Q psy6995          13 NIPLEHQNWLGMDDNLGPVAISLKREKVEYTQESQQMYRYRLLIRTSELKTGKIG   67 (342)
Q Consensus        13 ~~~keHqN~fG~DE~LGPvavSi~rE~~e~~~~~~~~y~YRiiiRtsel~T~~i~   67 (342)
                      -.+|||+||||+||+||||++|++||+..  ..   .+ ||||+||  |+++...
T Consensus       163 f~~keh~n~~g~d~~lgpi~lS~~~e~~~--s~---~h-~Rii~rt--lr~~~q~  209 (740)
T KOG3686|consen  163 FTGKEHPNYLGADELLGPIRLSQSREVPA--SC---AH-YRIIART--LRKMTQE  209 (740)
T ss_pred             HhcccCccccCCCchhceeEEEEeeeccc--cC---cc-eEEEEec--ccccccc
Confidence            45799999999999999999999999332  11   47 9999999  6665533

>KOG3550|consensus

Probab=98.12  E-value=5.4e-06  Score=75.42  Aligned_cols=76  Identities=29%  Similarity=0.440  Sum_probs=60.5

Q ss_pred             CCCC-CceEEEeecCCCCCCCeEEcCC------ceEEEEcccchhhh-hCCCCCCEE--eecccccCCCHHHHHHHHhcc
Q psy6995         244 TPGS-PAQELTLKRNGLGQLGFHVQPD------GLVTEVEHMGLAYQ-EGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS  313 (342)
Q Consensus       244 T~Gc-et~El~LrR~~~gqLGFhV~~E------G~Vt~VE~~g~Ae~-AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts  313 (342)
                      +-|. -++-+.|.... .+|||.|-+-      =+|..+.|+|.|++ +||+.||.|  |||++|....||+.|+||+.+
T Consensus        85 seghahprvvelpktd-eglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa  163 (207)
T KOG3550|consen   85 SEGHAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAA  163 (207)
T ss_pred             hccCCCCceeecCccc-cccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHh
Confidence            3444 34555555443 6899999422      28999999999987 789999999  999999999999999999976


Q ss_pred             C-cEEEEE
Q psy6995         314 S-LVTVTV  320 (342)
Q Consensus       314 ~-~V~v~V  320 (342)
                      . .|+++|
T Consensus       164 ~gsvklvv  171 (207)
T KOG3550|consen  164 VGSVKLVV  171 (207)
T ss_pred             cCcEEEEE
Confidence            5 788776

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=98.07  E-value=1.1e-05  Score=62.10  Aligned_cols=60  Identities=33%  Similarity=0.392  Sum_probs=45.8

Q ss_pred             CCCeEEcCC----c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHh---ccCcEEEEEeC
Q psy6995         261 QLGFHVQPD----G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLK---TSSLVTVTVIP  322 (342)
Q Consensus       261 qLGFhV~~E----G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLr---ts~~V~v~Vip  322 (342)
                      .||..++..    | .|.+|.++++|++|||++||+|  |||+.|  .+-+++...|.   ...+|+|++..
T Consensus         2 ~lGv~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v--~~~~~~~~~l~~~~~g~~v~l~v~R   71 (82)
T PF13180_consen    2 GLGVTVQNLSDTGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPV--NSSEDLVNILSKGKPGDTVTLTVLR   71 (82)
T ss_dssp             E-SEEEEECSCSSSEEEEEESTTSHHHHTTS-TTEEEEEETTEES--SSHHHHHHHHHCSSTTSEEEEEEEE
T ss_pred             EECeEEEEccCCCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEc--CCHHHHHHHHHhCCCCCEEEEEEEE
Confidence            466666432    4 7899999999999999999999  999999  45578888884   23368888876

...

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=97.89  E-value=3.2e-05  Score=58.18  Aligned_cols=59  Identities=25%  Similarity=0.293  Sum_probs=43.3

Q ss_pred             CCeEEcCC-c--eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccCcEEEEEeC
Q psy6995         262 LGFHVQPD-G--LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTVTVIP  322 (342)
Q Consensus       262 LGFhV~~E-G--~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~~V~v~Vip  322 (342)
                      +|+.+..+ +  .|..|.++++|++|||++||.|  |||+.+.+  -.+++..++....+.+++.+
T Consensus         3 ~G~~~~~~~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~--~~~~l~~~~~~~~v~l~v~r   66 (80)
T cd00990           3 LGLTLDKEEGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDA--LQDRLKEYQAGDPVELTVFR   66 (80)
T ss_pred             ccEEEEccCCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHH--HHHHHHhcCCCCEEEEEEEE
Confidence            57777533 2  8999999999999999999999  99999876  33333333333467776654

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=97.86  E-value=2.8e-05  Score=77.78  Aligned_cols=92  Identities=25%  Similarity=0.312  Sum_probs=71.9

Q ss_pred             hHHHHHHhh-hccCCCCCceEEEeec---CCC-CCCCeEEcC-C-c--eEEEEcccchhhhhCCCCCCEE--eecccccC
Q psy6995         232 ELMEVVVRL-RAATPGSPAQELTLKR---NGL-GQLGFHVQP-D-G--LVTEVEHMGLAYQEGLKQGCRL--ICKVAVST  300 (342)
Q Consensus       232 dl~EIV~RL-~~VT~Gcet~El~LrR---~~~-gqLGFhV~~-E-G--~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~  300 (342)
                      .+..++..| ..+|.=+...+..--+   ++. +++|-+++. + +  .|.++.++++|++||||+||+|  |||.++..
T Consensus        67 ai~g~ls~l~Dp~s~y~~~e~~~~~~~~~~~~~~GiG~~i~~~~~~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~  146 (406)
T COG0793          67 AIEGMLSSLGDPHSTYLDPEDAAEFRTDTSGEFGGIGIELQMEDIGGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGG  146 (406)
T ss_pred             HHHHHHHhcCCCcccccCHHHHHHhhhhccccccceeEEEEEecCCCcEEEecCCCChHHHcCCCCCCEEEEECCEEccC
Confidence            344567777 6676666433333222   222 788889876 3 3  8999999999999999999999  99999999


Q ss_pred             CCHHHHHHHHhccC--cEEEEEeCC
Q psy6995         301 LSHDQMVDLLKTSS--LVTVTVIPA  323 (342)
Q Consensus       301 lsHeq~vdlLrts~--~V~v~VipP  323 (342)
                      ++.++++++||-..  +|+|++.++
T Consensus       147 ~~~~~av~~irG~~Gt~V~L~i~r~  171 (406)
T COG0793         147 VSLDEAVKLIRGKPGTKVTLTILRA  171 (406)
T ss_pred             CCHHHHHHHhCCCCCCeEEEEEEEc
Confidence            99999999999444  899999998

>KOG3553|consensus

Probab=97.81  E-value=4.1e-06  Score=71.67  Aligned_cols=51  Identities=24%  Similarity=0.316  Sum_probs=46.1

Q ss_pred             c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccCcEEEEE
Q psy6995         270 G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTVTV  320 (342)
Q Consensus       270 G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~~V~v~V  320 (342)
                      | +||.|+.+++|+.||||.+|.|  +||-....++|+|.+..|+...-++++|
T Consensus        60 GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k~~vl~mLV  113 (124)
T KOG3553|consen   60 GIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITKEEVLRMLV  113 (124)
T ss_pred             cEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhHhHHHHHHH
Confidence            5 8999999999999999999999  9999999999999999998766555544

>PRK11186 carboxy-terminal protease; Provisional

Probab=97.75  E-value=4.2e-05  Score=81.15  Aligned_cols=98  Identities=21%  Similarity=0.276  Sum_probs=69.8

Q ss_pred             HHHHHHhhhccCCCCCceEEE-eec--C-CCCCCCeEEcCC-c--eEEEEcccchhhhh-CCCCCCEE--ee--c---cc
Q psy6995         233 LMEVVVRLRAATPGSPAQELT-LKR--N-GLGQLGFHVQPD-G--LVTEVEHMGLAYQE-GLKQGCRL--IC--K---VA  297 (342)
Q Consensus       233 l~EIV~RL~~VT~Gcet~El~-LrR--~-~~gqLGFhV~~E-G--~Vt~VE~~g~Ae~A-GLR~G~RL--Ic--g---~s  297 (342)
                      ++.++..|...|+=..+.+.. +..  + ...++|..++.+ |  +|++|.++|+|++| ||++||+|  ||  |   ++
T Consensus       213 i~~m~~~lDphT~Y~sp~e~e~f~~~~~~~~~GIGa~l~~~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~d  292 (667)
T PRK11186        213 MNAFAREIDPHTSYLSPRNAEQFNTEMNLSLEGIGAVLQMDDDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVD  292 (667)
T ss_pred             HHHHHhCCCCCccccChHHHHHhhhccCCceeEEEEEEEEeCCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccc
Confidence            455666667666644444432 222  2 236778877543 2  89999999999998 99999999  98  4   46


Q ss_pred             ccCCCHHHHHHHHh--ccCcEEEEEeCCCCCCCCC
Q psy6995         298 VSTLSHDQMVDLLK--TSSLVTVTVIPALSDGTPR  330 (342)
Q Consensus       298 V~~lsHeq~vdlLr--ts~~V~v~VipP~~dg~PR  330 (342)
                      |..++.++++++|+  ...+|+|+|.++..+|.++
T Consensus       293 v~g~~~~~vv~lirG~~Gt~V~LtV~r~~~~~~~~  327 (667)
T PRK11186        293 VIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTR  327 (667)
T ss_pred             cccCCHHHHHHHhcCCCCCEEEEEEEeCCCCCceE
Confidence            77888999999998  3347999998865556543

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=97.71  E-value=0.00014  Score=54.37  Aligned_cols=59  Identities=31%  Similarity=0.368  Sum_probs=46.7

Q ss_pred             CCeEEcCC---ceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc--CcEEEEEeC
Q psy6995         262 LGFHVQPD---GLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS--SLVTVTVIP  322 (342)
Q Consensus       262 LGFhV~~E---G~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts--~~V~v~Vip  322 (342)
                      |||..-.-   =+|..|.++++|+++|||+||.|  |||+++.  +.+++..+|+..  ..+.+++.+
T Consensus         3 ~~~~~g~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~--~~~~~~~~l~~~~~~~~~l~v~r   68 (79)
T cd00989           3 LGFVPGGPPIEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIK--SWEDLVDAVQENPGKPLTLTVER   68 (79)
T ss_pred             eeEeccCCccCcEEEeECCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHHCCCceEEEEEEE
Confidence            55555322   27899999999999999999999  9999887  568888888764  467777765

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3549|consensus

Probab=97.63  E-value=0.00014  Score=73.14  Aligned_cols=85  Identities=20%  Similarity=0.374  Sum_probs=72.1

Q ss_pred             HHHhhhccCCCCC-----ceEEEeecCCCCCCCeEEcCC------ceEEEEcccchhhhhCC-CCCCEE--eecccccCC
Q psy6995         236 VVVRLRAATPGSP-----AQELTLKRNGLGQLGFHVQPD------GLVTEVEHMGLAYQEGL-KQGCRL--ICKVAVSTL  301 (342)
Q Consensus       236 IV~RL~~VT~Gce-----t~El~LrR~~~gqLGFhV~~E------G~Vt~VE~~g~Ae~AGL-R~G~RL--Icg~sV~~l  301 (342)
                      .+|.+++|+-+-+     .+.++|||-.+|+||..+.+-      -+|..+-....|+..|+ =.||-|  |||..|.+-
T Consensus        37 ~iQkqdVvcvsG~p~~s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c  116 (505)
T KOG3549|consen   37 SIQKQDVVCVSGPPMESKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTAC  116 (505)
T ss_pred             hhhccceEecCCCCccCCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecC
Confidence            4688888877664     477889999999999999633      27888888999998884 589999  999999999


Q ss_pred             CHHHHHHHHhccC-cEEEEE
Q psy6995         302 SHDQMVDLLKTSS-LVTVTV  320 (342)
Q Consensus       302 sHeq~vdlLrts~-~V~v~V  320 (342)
                      +||++|.+||+++ .|+++|
T Consensus       117 ~HeevV~iLRNAGdeVtlTV  136 (505)
T KOG3549|consen  117 PHEEVVNILRNAGDEVTLTV  136 (505)
T ss_pred             ChHHHHHHHHhcCCEEEEEe
Confidence            9999999999887 588777

>TIGR00225 prc C-terminal peptidase (prc)

Probab=97.54  E-value=0.00015  Score=69.54  Aligned_cols=92  Identities=20%  Similarity=0.282  Sum_probs=65.3

Q ss_pred             hHHHHHHhh-hccCCCCCceEEE-e--ecC-CCCCCCeEEcCC--c-eEEEEcccchhhhhCCCCCCEE--eecccccCC
Q psy6995         232 ELMEVVVRL-RAATPGSPAQELT-L--KRN-GLGQLGFHVQPD--G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTL  301 (342)
Q Consensus       232 dl~EIV~RL-~~VT~Gcet~El~-L--rR~-~~gqLGFhV~~E--G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~l  301 (342)
                      -+.+++.+| ...|+=..+.+.. .  .+. ...++||.+..+  + +|..|.++++|++||||+||+|  |||++|...
T Consensus        18 ~l~~m~~~l~D~h~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~   97 (334)
T TIGR00225        18 AIKGMLASLNDPYTRYLSPETAKSFSETTSGSLEGIGIQVGMDDGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGM   97 (334)
T ss_pred             HHHHHHHhCCCCCccccCHHHHHHHHHhccCceEEEEEEEEEECCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCC
Confidence            456677776 3444332222211 1  112 336789998643  2 7899999999999999999999  999999999


Q ss_pred             CHHHHHHHHhc--cCcEEEEEeCC
Q psy6995         302 SHDQMVDLLKT--SSLVTVTVIPA  323 (342)
Q Consensus       302 sHeq~vdlLrt--s~~V~v~VipP  323 (342)
                      +.+++..+|+.  ...|.+++...
T Consensus        98 ~~~~~~~~l~~~~g~~v~l~v~R~  121 (334)
T TIGR00225        98 SLDDAVALIRGKKGTKVSLEILRA  121 (334)
T ss_pred             CHHHHHHhccCCCCCEEEEEEEeC
Confidence            88899998864  23677877754

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=97.46  E-value=0.00053  Score=67.82  Aligned_cols=52  Identities=23%  Similarity=0.343  Sum_probs=43.5

Q ss_pred             Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc---cCcEEEEEeC
Q psy6995         269 DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT---SSLVTVTVIP  322 (342)
Q Consensus       269 EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt---s~~V~v~Vip  322 (342)
                      +| +|++|.++++|++|||++||+|  |||++|.+  .+++.++|+.   ...+.+++..
T Consensus       362 ~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s--~~d~~~~l~~~~~g~~v~l~v~R  419 (428)
T TIGR02037       362 KGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSS--VAELRKVLDRAKKGGRVALLILR  419 (428)
T ss_pred             CceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEE
Confidence            45 8999999999999999999999  99999975  5678888864   3468888764

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=97.45  E-value=0.00029  Score=69.56  Aligned_cols=92  Identities=21%  Similarity=0.245  Sum_probs=66.4

Q ss_pred             hhHHHHHHhh-hccCCCCCceEEE-e---ecCCCCCCCeEEcC--C------c-eEEEEcccchhhhhCCCCCCEE--ee
Q psy6995         231 DELMEVVVRL-RAATPGSPAQELT-L---KRNGLGQLGFHVQP--D------G-LVTEVEHMGLAYQEGLKQGCRL--IC  294 (342)
Q Consensus       231 edl~EIV~RL-~~VT~Gcet~El~-L---rR~~~gqLGFhV~~--E------G-~Vt~VE~~g~Ae~AGLR~G~RL--Ic  294 (342)
                      +.+.+++..| ...|+=....+.. +   .+....++|+.+..  +      | +|+.|.++++|++|||++||+|  ||
T Consensus        51 ~~i~~ml~~L~D~hs~y~~~~~~~~~~~~~~~~~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~In  130 (389)
T PLN00049         51 AAIRKMLATLDDPFTRFLEPEKFKSLRSGTKGAVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILAID  130 (389)
T ss_pred             HHHHHHHhhCCCCcccCcCHHHHHHHHHhccCCceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcCCCCCCEEEEEC
Confidence            4577788888 5566433222221 1   12334688888742  1      4 6889999999999999999999  99


Q ss_pred             cccccCCCHHHHHHHHhc--cCcEEEEEeC
Q psy6995         295 KVAVSTLSHDQMVDLLKT--SSLVTVTVIP  322 (342)
Q Consensus       295 g~sV~~lsHeq~vdlLrt--s~~V~v~Vip  322 (342)
                      |++|...+.+++..+|+.  ...|.|++..
T Consensus       131 G~~v~~~~~~~~~~~l~g~~g~~v~ltv~r  160 (389)
T PLN00049        131 GTSTEGLSLYEAADRLQGPEGSSVELTLRR  160 (389)
T ss_pred             CEECCCCCHHHHHHHHhcCCCCEEEEEEEE
Confidence            999999999999999973  2357777654

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=97.42  E-value=0.0004  Score=53.46  Aligned_cols=50  Identities=24%  Similarity=0.357  Sum_probs=42.0

Q ss_pred             eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc---CcEEEEEeC
Q psy6995         271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS---SLVTVTVIP  322 (342)
Q Consensus       271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts---~~V~v~Vip  322 (342)
                      .|..|.++++|++||||+||.|  |||+.+.  +.+++.++|...   ..+.+++..
T Consensus        13 ~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r   67 (79)
T cd00991          13 VIVGVIVGSPAENAVLHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLP   67 (79)
T ss_pred             EEEEECCCChHHhcCCCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEE
Confidence            7889999999999999999999  9999998  457888888753   357777764

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG0606|consensus

Probab=97.36  E-value=0.00027  Score=78.55  Aligned_cols=71  Identities=28%  Similarity=0.439  Sum_probs=57.9

Q ss_pred             EEEeecCCCCCCCeEEcC-------------CceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-
Q psy6995         251 ELTLKRNGLGQLGFHVQP-------------DGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-  314 (342)
Q Consensus       251 El~LrR~~~gqLGFhV~~-------------EG~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-  314 (342)
                      .|+++|.+ .+|||.+..             +=+|..|+.+++|..|||++||-|  |||+.|..|.|.||++||-.+. 
T Consensus       629 pI~i~~~~-~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~gn  707 (1205)
T KOG0606|consen  629 PITIHFSG-KKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSGN  707 (1205)
T ss_pred             ceeeeccc-cccCceeeeEEEecCCcccceeeeeeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHHhcCC
Confidence            45666655 789998721             148999999999999999999999  9999999999999999997544 


Q ss_pred             cEEEEEeC
Q psy6995         315 LVTVTVIP  322 (342)
Q Consensus       315 ~V~v~Vip  322 (342)
                      +|.+.+.|
T Consensus       708 ~v~~~ttp  715 (1205)
T KOG0606|consen  708 KVTLRTTP  715 (1205)
T ss_pred             eeEEEeec
Confidence            66666543

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=97.28  E-value=0.0015  Score=65.51  Aligned_cols=40  Identities=23%  Similarity=0.404  Sum_probs=35.9

Q ss_pred             eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc
Q psy6995         271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT  312 (342)
Q Consensus       271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt  312 (342)
                      +|++|+++++|++||||+||+|  |||+.|.  +.+++.+.++.
T Consensus       224 vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~--s~~dl~~~l~~  265 (449)
T PRK10779        224 VLAEVQPNSAASKAGLQAGDRIVKVDGQPLT--QWQTFVTLVRD  265 (449)
T ss_pred             EEEeeCCCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHh
Confidence            7999999999999999999999  9999985  56788888864

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=97.12  E-value=0.0008  Score=51.10  Aligned_cols=50  Identities=28%  Similarity=0.339  Sum_probs=40.3

Q ss_pred             eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc---cCcEEEEEeC
Q psy6995         271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT---SSLVTVTVIP  322 (342)
Q Consensus       271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt---s~~V~v~Vip  322 (342)
                      +|.+|.++++|+++||++||.|  |||+.+.+.  +++.+++..   ...+.+.+..
T Consensus        27 ~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~--~~~~~~l~~~~~~~~i~l~v~r   81 (90)
T cd00987          27 LVASVDPGSPAAKAGLKPGDVILAVNGKPVKSV--ADLRRALAELKPGDKVTLTVLR   81 (90)
T ss_pred             EEEEECCCCHHHHcCCCcCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEE
Confidence            7889999999999999999999  999998754  456667754   3357777754

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3552|consensus

Probab=97.10  E-value=0.00053  Score=75.42  Aligned_cols=81  Identities=21%  Similarity=0.288  Sum_probs=64.9

Q ss_pred             CceEEEeecCCCCCCCeEEcCCceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEEeCCC
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTVIPAL  324 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~EG~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~VipP~  324 (342)
                      +++.+.++||...+.||-.----+|+.|.+||+++ +-|.+||.|  |||++|.+.+-|.+|||+|... .|-|+|+.|.
T Consensus        55 ~pr~vq~~r~~~lGFgfvagrPviVr~VT~GGps~-GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~qPc  133 (1298)
T KOG3552|consen   55 EPRQVQLQRNASLGFGFVAGRPVIVRFVTEGGPSI-GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQPC  133 (1298)
T ss_pred             cchhhhhhccccccceeecCCceEEEEecCCCCcc-ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEeccc
Confidence            68888899997544444332113999999999986 789999999  9999999999999999999655 6899999994


Q ss_pred             CCCCC
Q psy6995         325 SDGTP  329 (342)
Q Consensus       325 ~dg~P  329 (342)
                      .-+.|
T Consensus       134 ~~p~p  138 (1298)
T KOG3552|consen  134 VLPGP  138 (1298)
T ss_pred             cCCCc
Confidence            33333

>PRK10139 serine endoprotease; Provisional

Probab=97.09  E-value=0.0032  Score=63.89  Aligned_cols=50  Identities=18%  Similarity=0.299  Sum_probs=41.7

Q ss_pred             eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEEEEeC
Q psy6995         271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTVIP  322 (342)
Q Consensus       271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v~Vip  322 (342)
                      +|+.|.++++|++||||+||+|  |||++|.+  -+++.++|+.. ..+.+++..
T Consensus       393 ~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~v~l~v~R  445 (455)
T PRK10139        393 KIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIALQIVR  445 (455)
T ss_pred             EEEEeCCCChHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEEEEE
Confidence            6899999999999999999999  99998865  67888998753 356666654

>TIGR00054 RIP metalloprotease RseP

Probab=96.96  E-value=0.0042  Score=62.06  Aligned_cols=78  Identities=13%  Similarity=0.129  Sum_probs=55.1

Q ss_pred             hhhHHHHHHhhhccCCCCCceEEEeecCCCCC-----CCeEEcC---CceEEEEcccchhhhhCCCCCCEE--eeccccc
Q psy6995         230 RDELMEVVVRLRAATPGSPAQELTLKRNGLGQ-----LGFHVQP---DGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVS  299 (342)
Q Consensus       230 ~edl~EIV~RL~~VT~Gcet~El~LrR~~~gq-----LGFhV~~---EG~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~  299 (342)
                      ..+.+++-+|+....   ....+++.|++...     +|+....   .-.|.+|.++++|++||||+||+|  |||++|.
T Consensus       160 v~~~~dl~~~ia~~~---~~v~~~I~r~g~~~~l~v~l~~~~~~~~~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~  236 (420)
T TIGR00054       160 IPGFKDVRQQIADIA---GEPMVEILAERENWTFEVMKELIPRGPKIEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLR  236 (420)
T ss_pred             cCCHHHHHHHHHhhc---ccceEEEEEecCceEecccccceecCCCcCcEEEEECCCCHHHHcCCCCCCEEEEECCEECC
Confidence            344556666665554   46677877764431     2222111   137999999999999999999999  9999996


Q ss_pred             CCCHHHHHHHHhc
Q psy6995         300 TLSHDQMVDLLKT  312 (342)
Q Consensus       300 ~lsHeq~vdlLrt  312 (342)
                      +  -+++.+.|+.
T Consensus       237 s--~~dl~~~l~~  247 (420)
T TIGR00054       237 S--WTDFVSAVKE  247 (420)
T ss_pred             C--HHHHHHHHHh
Confidence            4  6888888875

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=96.95  E-value=0.0011  Score=65.60  Aligned_cols=88  Identities=22%  Similarity=0.238  Sum_probs=55.4

Q ss_pred             hhhHHHHHHhhhc---cCCCCCceEEE-eecCCCCCCCeEEcCCc-eEEEEcccchhhhhCCCCCCEE--eecccccCCC
Q psy6995         230 RDELMEVVVRLRA---ATPGSPAQELT-LKRNGLGQLGFHVQPDG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLS  302 (342)
Q Consensus       230 ~edl~EIV~RL~~---VT~Gcet~El~-LrR~~~gqLGFhV~~EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~ls  302 (342)
                      .+.+++++.+|.-   +.+|.-=..+. +.-.....||+.. ..| +|++|.++++|++|||++||+|  |||+.|.+  
T Consensus       215 ~~~~~~~~~~l~~~g~~~~~~lGi~~~~~~~~~~~~lgl~~-~~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~--  291 (428)
T TIGR02037       215 SNMAKNVVDQLIEGGKVQRGWLGVTIQEVTSDLAKSLGLEK-QRGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISS--  291 (428)
T ss_pred             hHHHHHHHHHHHhcCcCcCCcCceEeecCCHHHHHHcCCCC-CCceEEEEccCCCChHHcCCCCCCEEEEECCEEcCC--
Confidence            3667788888764   33333222222 1111113445433 245 8999999999999999999999  99999875  


Q ss_pred             HHHHHHHHhc---cCcEEEEE
Q psy6995         303 HDQMVDLLKT---SSLVTVTV  320 (342)
Q Consensus       303 Heq~vdlLrt---s~~V~v~V  320 (342)
                      .+++.++|..   ...|++++
T Consensus       292 ~~~~~~~l~~~~~g~~v~l~v  312 (428)
T TIGR02037       292 FADLRRAIGTLKPGKKVTLGI  312 (428)
T ss_pred             HHHHHHHHHhcCCCCEEEEEE
Confidence            5556666643   23455554

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=96.93  E-value=0.003  Score=48.03  Aligned_cols=52  Identities=21%  Similarity=0.241  Sum_probs=41.2

Q ss_pred             CCc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc---cCcEEEEEeC
Q psy6995         268 PDG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT---SSLVTVTVIP  322 (342)
Q Consensus       268 ~EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt---s~~V~v~Vip  322 (342)
                      ++| +|..|.++++|+. ||++||.|  |||+++.+  .+++..+|..   ...+.+++..
T Consensus         7 ~~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~l~v~r   64 (79)
T cd00986           7 YHGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVKLKVKR   64 (79)
T ss_pred             ecCEEEEEECCCCchhh-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEE
Confidence            456 7889999999997 89999999  99999874  6778888864   2357777753

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3542|consensus

Probab=96.90  E-value=0.0014  Score=70.68  Aligned_cols=81  Identities=25%  Similarity=0.356  Sum_probs=66.6

Q ss_pred             hhccCCCC----CceEEEeecCCC-CCCCeEEcCC---c---eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHH
Q psy6995         240 LRAATPGS----PAQELTLKRNGL-GQLGFHVQPD---G---LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQM  306 (342)
Q Consensus       240 L~~VT~Gc----et~El~LrR~~~-gqLGFhV~~E---G---~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~  306 (342)
                      |.++--.|    ..+.++|.|... ..|=|.+.+-   |   ||.+|++++-|.++||+.||.|  ||||+...++..++
T Consensus       523 LrLLNIACaaKAK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA  602 (1283)
T KOG3542|consen  523 LRLLNIACAAKAKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKA  602 (1283)
T ss_pred             eeehhhhhhhcccceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHH
Confidence            33455567    457888988644 6788887432   3   9999999999999999999999  99999999999999


Q ss_pred             HHHHhccCcEEEEE
Q psy6995         307 VDLLKTSSLVTVTV  320 (342)
Q Consensus       307 vdlLrts~~V~v~V  320 (342)
                      .++||+...+.++|
T Consensus       603 ~eiLrnnthLtltv  616 (1283)
T KOG3542|consen  603 EEILRNNTHLTLTV  616 (1283)
T ss_pred             HHHhcCCceEEEEE
Confidence            99999877766665

>PRK10942 serine endoprotease; Provisional

Probab=96.71  E-value=0.01  Score=60.58  Aligned_cols=50  Identities=20%  Similarity=0.273  Sum_probs=42.5

Q ss_pred             eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEEeC
Q psy6995         271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTVIP  322 (342)
Q Consensus       271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~Vip  322 (342)
                      +|++|.++++|+++|||+||+|  |||+.|.+  -+++.+.|++.. .+.|+|..
T Consensus       411 vV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s--~~dl~~~l~~~~~~v~l~V~R  463 (473)
T PRK10942        411 VVDNVKPGTPAAQIGLKKGDVIIGANQQPVKN--IAELRKILDSKPSVLALNIQR  463 (473)
T ss_pred             EEEEeCCCChHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEEEEE
Confidence            6899999999999999999999  99999987  588888887643 56666654

>PRK10942 serine endoprotease; Provisional

Probab=96.41  E-value=0.0044  Score=63.18  Aligned_cols=87  Identities=16%  Similarity=0.189  Sum_probs=54.6

Q ss_pred             hhHHHHHHhhhc---cCCCCCceEEE-eecCCCCCCCeEEcCCc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCH
Q psy6995         231 DELMEVVVRLRA---ATPGSPAQELT-LKRNGLGQLGFHVQPDG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSH  303 (342)
Q Consensus       231 edl~EIV~RL~~---VT~Gcet~El~-LrR~~~gqLGFhV~~EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsH  303 (342)
                      +-++.++..|.-   |++|.--..+. |.-+-..++|..- ..| +|++|+++++|++||||+||.|  |||+.|.+.  
T Consensus       270 ~~~~~v~~~l~~~g~v~rg~lGv~~~~l~~~~a~~~~l~~-~~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~--  346 (473)
T PRK10942        270 NMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDA-QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF--  346 (473)
T ss_pred             HHHHHHHHHHHhccccccceeeeEeeecCHHHHHhcCCCC-CCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCH--
Confidence            557778887753   55554222222 2111112333332 245 8899999999999999999999  999999764  


Q ss_pred             HHHHHHHhc---cCcEEEEE
Q psy6995         304 DQMVDLLKT---SSLVTVTV  320 (342)
Q Consensus       304 eq~vdlLrt---s~~V~v~V  320 (342)
                      +++...|..   ..++.+++
T Consensus       347 ~dl~~~l~~~~~g~~v~l~v  366 (473)
T PRK10942        347 AALRAQVGTMPVGSKLTLGL  366 (473)
T ss_pred             HHHHHHHHhcCCCCEEEEEE
Confidence            556555542   23455544

>KOG3209|consensus

Probab=96.38  E-value=0.008  Score=65.15  Aligned_cols=82  Identities=30%  Similarity=0.546  Sum_probs=62.5

Q ss_pred             eEEE--eecCCCCCCCeEEcCC---c---eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC---c
Q psy6995         250 QELT--LKRNGLGQLGFHVQPD---G---LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS---L  315 (342)
Q Consensus       250 ~El~--LrR~~~gqLGFhV~~E---G---~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~---~  315 (342)
                      .|+.  |+|.- -+.||.+-+-   |   +|-.+.+.|.|++-| ||.||-|  |+|.+|..-+|.++|+||.+++   .
T Consensus       649 k~ldV~L~rke-sGFGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArngh  727 (984)
T KOG3209|consen  649 KELDVFLRRKE-SGFGFRILGGDEPGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGH  727 (984)
T ss_pred             cceeEEEEeec-cccceEEecCCCCCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCc
Confidence            5555  66654 6799999421   2   888999999999877 9999999  8899999999999999997654   4


Q ss_pred             EEEEEeCCC----CCCCCCcC
Q psy6995         316 VTVTVIPAL----SDGTPRRY  332 (342)
Q Consensus       316 V~v~VipP~----~dg~PRRg  332 (342)
                      |.|+|-.+.    ..++||-+
T Consensus       728 V~LtVRRkv~~~~~~rsp~~s  748 (984)
T KOG3209|consen  728 VNLTVRRKVRTGPARRSPRNS  748 (984)
T ss_pred             eEEEEeeeeeeccccCCcccc
Confidence            777775543    34455543

>PRK10139 serine endoprotease; Provisional

Probab=96.34  E-value=0.0079  Score=61.04  Aligned_cols=79  Identities=15%  Similarity=0.163  Sum_probs=50.7

Q ss_pred             hhHHHHHHhhhc---cCCCCCceEEE-eecCCCCCCCeEEcCCc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCH
Q psy6995         231 DELMEVVVRLRA---ATPGSPAQELT-LKRNGLGQLGFHVQPDG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSH  303 (342)
Q Consensus       231 edl~EIV~RL~~---VT~Gcet~El~-LrR~~~gqLGFhV~~EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsH  303 (342)
                      +.++.|+..|.-   |++|.--..+. |.......||... ..| +|.+|.++++|++||||+||.|  |||+.|.+  .
T Consensus       249 ~~~~~v~~~l~~~g~v~r~~LGv~~~~l~~~~~~~lgl~~-~~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s--~  325 (455)
T PRK10139        249 NMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDV-QRGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNS--F  325 (455)
T ss_pred             HHHHHHHHHHhhcCcccccceeEEEEECCHHHHHhcCCCC-CCceEEEEECCCChHHHCCCCCCCEEEEECCEECCC--H
Confidence            556667766642   44443222221 2111113344432 235 8999999999999999999999  99999875  5


Q ss_pred             HHHHHHHhc
Q psy6995         304 DQMVDLLKT  312 (342)
Q Consensus       304 eq~vdlLrt  312 (342)
                      +++...|..
T Consensus       326 ~dl~~~l~~  334 (455)
T PRK10139        326 AELRSRIAT  334 (455)
T ss_pred             HHHHHHHHh
Confidence            777777753

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=96.29  E-value=0.0043  Score=62.37  Aligned_cols=52  Identities=23%  Similarity=0.288  Sum_probs=39.6

Q ss_pred             CceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc---cCcEEEEEeC
Q psy6995         269 DGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT---SSLVTVTVIP  322 (342)
Q Consensus       269 EG~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt---s~~V~v~Vip  322 (342)
                      .-+|++|+++++|++||||+||.|  |||+.|.+-  +++...+.+   ..++++++.+
T Consensus       127 ~~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~~--~~l~~~v~~~~~g~~v~v~v~R  183 (449)
T PRK10779        127 RPVVGEIAPNSIAAQAQIAPGTELKAVDGIETPDW--DAVRLALVSKIGDESTTITVAP  183 (449)
T ss_pred             CccccccCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhhccCCceEEEEEe
Confidence            458999999999999999999999  999999865  555444432   2246666653

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=96.06  E-value=0.016  Score=50.68  Aligned_cols=66  Identities=24%  Similarity=0.353  Sum_probs=44.9

Q ss_pred             CCCCceEEEeec----CCCCCCCeEEcCC--------c-eEEEEcccchhhhhCCCC-CCEE--eecccccCCCHHHHHH
Q psy6995         245 PGSPAQELTLKR----NGLGQLGFHVQPD--------G-LVTEVEHMGLAYQEGLKQ-GCRL--ICKVAVSTLSHDQMVD  308 (342)
Q Consensus       245 ~Gcet~El~LrR----~~~gqLGFhV~~E--------G-~Vt~VE~~g~Ae~AGLR~-G~RL--Icg~sV~~lsHeq~vd  308 (342)
                      ++..+|++.+.=    .+.+.||++|+.+        + =|.+|.++++|++|||++ .|-|  +++..+.  +.+++.+
T Consensus         7 k~~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~--~~~~l~~   84 (138)
T PF04495_consen    7 KGQTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLD--DEDDLFE   84 (138)
T ss_dssp             TTSSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE----STCHHHH
T ss_pred             CCCeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecC--CHHHHHH
Confidence            566678887532    2458999999765        2 478999999999999999 5999  7777776  4578888


Q ss_pred             HHhc
Q psy6995         309 LLKT  312 (342)
Q Consensus       309 lLrt  312 (342)
                      ++.+
T Consensus        85 ~v~~   88 (138)
T PF04495_consen   85 LVEA   88 (138)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8863

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>PRK10898 serine endoprotease; Provisional

Probab=96.02  E-value=0.0088  Score=58.61  Aligned_cols=52  Identities=21%  Similarity=0.310  Sum_probs=40.0

Q ss_pred             Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHh---ccCcEEEEEeC
Q psy6995         269 DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLK---TSSLVTVTVIP  322 (342)
Q Consensus       269 EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLr---ts~~V~v~Vip  322 (342)
                      .| +|.+|+++++|++||||+||.|  |||+.|.+.  +++.+.|.   ....+.|++..
T Consensus       279 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~--~~l~~~l~~~~~g~~v~l~v~R  336 (353)
T PRK10898        279 QGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISA--LETMDQVAEIRPGSVIPVVVMR  336 (353)
T ss_pred             CeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEE
Confidence            45 7889999999999999999999  999998764  44444443   33457777763

>KOG1892|consensus

Probab=95.96  E-value=0.025  Score=63.19  Aligned_cols=111  Identities=23%  Similarity=0.371  Sum_probs=77.3

Q ss_pred             ccceeeecccCCcEEEEeecCceEEEEecCCCCCChhhHHHHHHhhhccCCCCCceEEEeecCCCCCCCeEEcCC-----
Q psy6995         195 AKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPD-----  269 (342)
Q Consensus       195 c~dVIGWt~s~~~LkIyY~rGE~i~l~~~e~~~~~~edl~EIV~RL~~VT~Gcet~El~LrR~~~gqLGFhV~~E-----  269 (342)
                      || ++--..+-....||+|.-+.=+=...         -.++-+.|+   +--|...++|+.|  ++.|..+-+-     
T Consensus       893 Cr-l~~~p~spg~wT~ymh~~~~~ss~a~---------~n~l~q~~~---~~pei~~vtL~Kn--nGmGLSIVAAkGaGq  957 (1629)
T KOG1892|consen  893 CR-LIPHPRSPGTWTIYMHGADYESSLAR---------ENELAQPLR---KEPEIITVTLKKN--NGMGLSIVAAKGAGQ  957 (1629)
T ss_pred             ee-ecCCCCCCceeEEEeeccccccchhh---------hhhccchhh---cCCceEEEEEecc--CCceEEEEeeccCCc
Confidence            44 44444444445677765442111111         124444444   4456778889888  7888887221     


Q ss_pred             ---c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHh-ccCcEEEEE
Q psy6995         270 ---G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLK-TSSLVTVTV  320 (342)
Q Consensus       270 ---G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLr-ts~~V~v~V  320 (342)
                         | +|-+|.+||+|..-| |..||.|  |+|+++..++.|...+|+. |+..|++-|
T Consensus       958 ~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~vV~leV 1016 (1629)
T KOG1892|consen  958 RKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGNVVHLEV 1016 (1629)
T ss_pred             cccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCCeEEEeh
Confidence               3 899999999998866 8999999  9999999999999999995 666777765

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=95.78  E-value=0.013  Score=55.80  Aligned_cols=51  Identities=22%  Similarity=0.298  Sum_probs=40.9

Q ss_pred             c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHh---ccCcEEEEEeC
Q psy6995         270 G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLK---TSSLVTVTVIP  322 (342)
Q Consensus       270 G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLr---ts~~V~v~Vip  322 (342)
                      | .|+.|.++++|+++|||+||.|  |||+++.+  .+++.+++.   ....+.|+|..
T Consensus       192 G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~--~~~~~~~l~~~~~~~~v~l~V~R  248 (259)
T TIGR01713       192 GYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRD--PEQAFQALQMLREETNLTLTVER  248 (259)
T ss_pred             EEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCeEEEEEEE
Confidence            5 6778999999999999999999  99999975  455666554   44578888764

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>KOG0609|consensus

Probab=95.64  E-value=0.034  Score=58.38  Aligned_cols=72  Identities=26%  Similarity=0.471  Sum_probs=58.6

Q ss_pred             eecCCCCCCCeEEcC--C--ceEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEEEEeCCCC
Q psy6995         254 LKRNGLGQLGFHVQP--D--GLVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTVIPALS  325 (342)
Q Consensus       254 LrR~~~gqLGFhV~~--E--G~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v~VipP~~  325 (342)
                      +.++..--||=.+.-  .  =||..+..||.|++.| |+.||.|  |||.+|.+...+|+.++|+++ +.+++.+||-..
T Consensus       128 i~k~~~eplG~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfkiiP~~~  207 (542)
T KOG0609|consen  128 IVKNTGEPLGATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFKIIPSYR  207 (542)
T ss_pred             EeecCCCccceEEEeccCCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEEEccccc
Confidence            555544556655532  2  3999999999999988 5789999  999999999999999999954 589999998866

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=95.63  E-value=0.016  Score=60.81  Aligned_cols=49  Identities=31%  Similarity=0.392  Sum_probs=41.1

Q ss_pred             CceEEEeecCC--CCCCCeEEcCCc---eEEEEcccchhhhhCCCCCCEE--eecc
Q psy6995         248 PAQELTLKRNG--LGQLGFHVQPDG---LVTEVEHMGLAYQEGLKQGCRL--ICKV  296 (342)
Q Consensus       248 et~El~LrR~~--~gqLGFhV~~EG---~Vt~VE~~g~Ae~AGLR~G~RL--Icg~  296 (342)
                      +..-++++...  ..-||-.|..||   .|+.|+++|+|.+|||++||+|  |||.
T Consensus       437 ~~~gL~~~~~~~~~~~LGl~v~~~~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~  492 (558)
T COG3975         437 ERFGLTFTPKPREAYYLGLKVKSEGGHEKITFVFPGGPAYKAGLSPGDKIVAINGI  492 (558)
T ss_pred             hhcceEEEecCCCCcccceEecccCCeeEEEecCCCChhHhccCCCccEEEEEcCc
Confidence            44445555532  368999999898   9999999999999999999999  9998

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=95.57  E-value=0.014  Score=56.99  Aligned_cols=52  Identities=25%  Similarity=0.289  Sum_probs=41.9

Q ss_pred             Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc---cCcEEEEEeC
Q psy6995         269 DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT---SSLVTVTVIP  322 (342)
Q Consensus       269 EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt---s~~V~v~Vip  322 (342)
                      .| +|..|.++++|++||||+||.|  |||+.|.+  .+++.+.|..   ...|.+++..
T Consensus       278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s--~~dl~~~l~~~~~g~~v~l~v~R  335 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAGILVRDVILKYDGKDVIG--AEELMDRIAETRPGSKVMVTVLR  335 (351)
T ss_pred             ccceEeecCCCChHHHCCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEE
Confidence            35 7889999999999999999999  99999865  5666666653   3467777764

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=95.41  E-value=0.013  Score=60.16  Aligned_cols=48  Identities=25%  Similarity=0.222  Sum_probs=35.4

Q ss_pred             eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccCcEEEEEe
Q psy6995         271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTVTVI  321 (342)
Q Consensus       271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~~V~v~Vi  321 (342)
                      .|..|.++++|++|||++||+|  |||+.|.+.  .++..++.. ..+.+.|.
T Consensus         1 ~I~~V~pgSpAe~AGLe~GD~IlsING~~V~Dw--~D~~~~l~~-e~l~L~V~   50 (433)
T TIGR03279         1 LISAVLPGSIAEELGFEPGDALVSINGVAPRDL--IDYQFLCAD-EELELEVL   50 (433)
T ss_pred             CcCCcCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHhcC-CcEEEEEE
Confidence            3678999999999999999999  999999654  344444432 34555544

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>TIGR00054 RIP metalloprotease RseP

Probab=94.79  E-value=0.032  Score=55.91  Aligned_cols=40  Identities=8%  Similarity=0.253  Sum_probs=33.6

Q ss_pred             ceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHh
Q psy6995         270 GLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLK  311 (342)
Q Consensus       270 G~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLr  311 (342)
                      -+|++|+++++|++||||+||+|  |||..+.+  .+++...+.
T Consensus       130 ~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~--~~dl~~~ia  171 (420)
T TIGR00054       130 PVIELLDKNSIALEAGIEPGDEILSVNGNKIPG--FKDVRQQIA  171 (420)
T ss_pred             ceeeccCCCCHHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHH
Confidence            38999999999999999999999  99998765  456655554

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>KOG3580|consensus

Probab=94.79  E-value=0.051  Score=58.49  Aligned_cols=67  Identities=22%  Similarity=0.332  Sum_probs=53.1

Q ss_pred             ceEEEeecCCCCCCCeEEcC--------Cc----eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC
Q psy6995         249 AQELTLKRNGLGQLGFHVQP--------DG----LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS  314 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~--------EG----~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~  314 (342)
                      --.+||.++..-+.|.-+.+        +|    +|.+|-++|+|+ +-|+.||||  |||++..+..|.=+|+.||++.
T Consensus         9 QhTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe-G~LQenDrvvMVNGvsMenv~haFAvQqLrksg   87 (1027)
T KOG3580|consen    9 QHTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE-GLLQENDRVVMVNGVSMENVLHAFAVQQLRKSG   87 (1027)
T ss_pred             hheeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc-cccccCCeEEEEcCcchhhhHHHHHHHHHHhhc
Confidence            34567777665555555521        12    799999999997 678999999  9999999999999999999887


Q ss_pred             cE
Q psy6995         315 LV  316 (342)
Q Consensus       315 ~V  316 (342)
                      ++
T Consensus        88 K~   89 (1027)
T KOG3580|consen   88 KV   89 (1027)
T ss_pred             cc
Confidence            64

>KOG3606|consensus

Probab=94.50  E-value=0.066  Score=53.01  Aligned_cols=85  Identities=28%  Similarity=0.384  Sum_probs=67.8

Q ss_pred             hhHHHHHHhhhccCCCCCceEEEeecCCCCCCCeEEcCC--------------c-eEEEEcccchhhhhCCC-CCCEE--
Q psy6995         231 DELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPD--------------G-LVTEVEHMGLAYQEGLK-QGCRL--  292 (342)
Q Consensus       231 edl~EIV~RL~~VT~Gcet~El~LrR~~~gqLGFhV~~E--------------G-~Vt~VE~~g~Ae~AGLR-~G~RL--  292 (342)
                      +-+.|-=+|..+.-.|||           -.|||-+.+-              | ||..+.++|.||..||- +.|.+  
T Consensus       153 DivPEtHRRVRL~khG~e-----------kPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlE  221 (358)
T KOG3606|consen  153 DIVPETHRRVRLHKHGSE-----------KPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLE  221 (358)
T ss_pred             cccchhhhheehhhcCCC-----------CCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEE
Confidence            445566677777777775           3566666411              3 89999999999999975 67887  


Q ss_pred             eecccccCCCHHHHHHHHh-ccCcEEEEEeCCCCC
Q psy6995         293 ICKVAVSTLSHDQMVDLLK-TSSLVTVTVIPALSD  326 (342)
Q Consensus       293 Icg~sV~~lsHeq~vdlLr-ts~~V~v~VipP~~d  326 (342)
                      |||--|+.-+-+|+.|++- +++.+-|+|-|.+..
T Consensus       222 VNGIEVaGKTLDQVTDMMvANshNLIiTVkPANQR  256 (358)
T KOG3606|consen  222 VNGIEVAGKTLDQVTDMMVANSHNLIITVKPANQR  256 (358)
T ss_pred             EcCEEeccccHHHHHHHHhhcccceEEEecccccc
Confidence            9999999999999999985 889999999888765

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.65  E-value=0.45  Score=45.85  Aligned_cols=89  Identities=17%  Similarity=0.185  Sum_probs=64.1

Q ss_pred             hhHHHHHHhhhc---cCCCCCceEEEeecCCCCCCCeEEcCCc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHH
Q psy6995         231 DELMEVVVRLRA---ATPGSPAQELTLKRNGLGQLGFHVQPDG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHD  304 (342)
Q Consensus       231 edl~EIV~RL~~---VT~Gcet~El~LrR~~~gqLGFhV~~EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHe  304 (342)
                      +.+..++.-|..   +.+|..-..+.-...... +||. ...| +|.+|.++++|.++|+++||-|  +||+.+..  ..
T Consensus       231 ~~~~~v~~~l~~~G~v~~~~lgv~~~~~~~~~~-~g~~-~~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~--~~  306 (347)
T COG0265         231 NLVAPVLDELISKGKVVRGYLGVIGEPLTADIA-LGLP-VAAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVAS--LS  306 (347)
T ss_pred             HHHHHHHHHHHHcCCccccccceEEEEcccccc-cCCC-CCCceEEEecCCCChHHHcCCCCCCEEEEECCEEccC--HH
Confidence            556666666664   667776666663333323 8877 4578 9999999999999999999999  99998865  55


Q ss_pred             HHHHHHhccC---cEEEEEeCC
Q psy6995         305 QMVDLLKTSS---LVTVTVIPA  323 (342)
Q Consensus       305 q~vdlLrts~---~V~v~VipP  323 (342)
                      ++.+.+.+..   .+.+.++..
T Consensus       307 ~l~~~v~~~~~g~~v~~~~~r~  328 (347)
T COG0265         307 DLVAAVASNRPGDEVALKLLRG  328 (347)
T ss_pred             HHHHHHhccCCCCEEEEEEEEC
Confidence            6666665322   577777665

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=92.58  E-value=0.25  Score=50.50  Aligned_cols=59  Identities=19%  Similarity=0.392  Sum_probs=42.2

Q ss_pred             CCCCeEEcCCce-EEEE--------cccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc--CcEEEEE
Q psy6995         260 GQLGFHVQPDGL-VTEV--------EHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS--SLVTVTV  320 (342)
Q Consensus       260 gqLGFhV~~EG~-Vt~V--------E~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts--~~V~v~V  320 (342)
                      ...|-.++.+|+ |...        +.+++|++||||+||.|  |||++|.+  -+++.++|+..  ..+.+++
T Consensus        96 ~~iGI~l~t~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~s--~~DL~~iL~~~~g~~V~LtV  167 (402)
T TIGR02860        96 QSIGVKLNTKGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIKN--MDDLANLINKAGGEKLTLTI  167 (402)
T ss_pred             EEEEEEEecCEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCeEEEEE
Confidence            356777777873 3332        23689999999999999  99999865  57788888643  2455554

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>KOG3605|consensus

Probab=91.90  E-value=0.27  Score=53.36  Aligned_cols=84  Identities=19%  Similarity=0.325  Sum_probs=63.7

Q ss_pred             hhccCCCCCceEEEeecCCCCCCCeEEcCCc--------eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHH
Q psy6995         240 LRAATPGSPAQELTLKRNGLGQLGFHVQPDG--------LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVD  308 (342)
Q Consensus       240 L~~VT~Gcet~El~LrR~~~gqLGFhV~~EG--------~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vd  308 (342)
                      |+..+|----+|+.+..-.-.-||--|-+-|        +|+....+|+|++.| |--||+|  |||.+++.|+-..--.
T Consensus       637 Le~FakkE~qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs  716 (829)
T KOG3605|consen  637 LEHFAKKENQKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQS  716 (829)
T ss_pred             HHHhhhhcccceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHH
Confidence            4555555556788877655467787776554        789999999999987 8899999  9999999999887777


Q ss_pred             HHh---ccCcEEEEEeCC
Q psy6995         309 LLK---TSSLVTVTVIPA  323 (342)
Q Consensus       309 lLr---ts~~V~v~VipP  323 (342)
                      .+|   +...|+++|++.
T Consensus       717 ~Ik~~KnQT~VkltiV~c  734 (829)
T KOG3605|consen  717 IIKGLKNQTAVKLNIVSC  734 (829)
T ss_pred             HHhcccccceEEEEEecC
Confidence            776   344577766653

>KOG3834|consensus

Probab=91.44  E-value=0.58  Score=48.55  Aligned_cols=83  Identities=14%  Similarity=0.087  Sum_probs=60.5

Q ss_pred             CCCCCceEEEeecCCCCC---CCeEEcCCc---------eEEEEcccchhhhhCCCCC-CEEeecccccCCCHHHHHHHH
Q psy6995         244 TPGSPAQELTLKRNGLGQ---LGFHVQPDG---------LVTEVEHMGLAYQEGLKQG-CRLICKVAVSTLSHDQMVDLL  310 (342)
Q Consensus       244 T~Gcet~El~LrR~~~gq---LGFhV~~EG---------~Vt~VE~~g~Ae~AGLR~G-~RLIcg~sV~~lsHeq~vdlL  310 (342)
                      +|..++|++.|.+...-+   ||..|..-.         =|-+|+++++|+.||||++ |-||+=-+...-.-++...||
T Consensus        73 ~kt~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~~~~eDl~~lI  152 (462)
T KOG3834|consen   73 SKTQEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVMHEEEDLFTLI  152 (462)
T ss_pred             cccceeEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhhccchHHHHHHH
Confidence            578899999999975433   777775443         3779999999999999954 555655455666678888888


Q ss_pred             h--ccCcEEEEEeCCCCC
Q psy6995         311 K--TSSLVTVTVIPALSD  326 (342)
Q Consensus       311 r--ts~~V~v~VipP~~d  326 (342)
                      .  .+..+++.|..=++|
T Consensus       153 eshe~kpLklyVYN~D~d  170 (462)
T KOG3834|consen  153 ESHEGKPLKLYVYNHDTD  170 (462)
T ss_pred             HhccCCCcceeEeecCCC
Confidence            6  344688877765554

>KOG3551|consensus

Probab=90.31  E-value=0.33  Score=50.10  Aligned_cols=66  Identities=21%  Similarity=0.305  Sum_probs=54.4

Q ss_pred             eEEEeecCCCCCCCeEEcCC---c---eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccCc
Q psy6995         250 QELTLKRNGLGQLGFHVQPD---G---LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSSL  315 (342)
Q Consensus       250 ~El~LrR~~~gqLGFhV~~E---G---~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~~  315 (342)
                      +.+.+..-..|+||-++.+-   .   +|..+-.+=.|.++| |..||-|  |||.++..-+|+|.|+.|+-+.+
T Consensus        86 R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGk  160 (506)
T KOG3551|consen   86 RRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGK  160 (506)
T ss_pred             ceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCc
Confidence            55666666779999999632   1   677778888888776 8999999  99999999999999999986665

>KOG3571|consensus

Probab=88.56  E-value=1.5  Score=46.73  Aligned_cols=80  Identities=21%  Similarity=0.321  Sum_probs=61.7

Q ss_pred             CceEEEeecCCCCCCCeEEcC------Cc--eEEEEcccchhhhh-CCCCCCEE--eecccccCCCHHHHHHHHhccC--
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP------DG--LVTEVEHMGLAYQE-GLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS--  314 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~------EG--~Vt~VE~~g~Ae~A-GLR~G~RL--Icg~sV~~lsHeq~vdlLrts~--  314 (342)
                      ...+++|.=....=||..+-+      ||  +|.++..+|+-+.- -+-+||-|  ||.++..+++-+|+|+.||.++  
T Consensus       249 nIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~  328 (626)
T KOG3571|consen  249 NIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSR  328 (626)
T ss_pred             eEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhcc
Confidence            445666666666779999843      34  99999999976654 48999999  9999999999999999999644  


Q ss_pred             --cEEEEEe---CCCCCC
Q psy6995         315 --LVTVTVI---PALSDG  327 (342)
Q Consensus       315 --~V~v~Vi---pP~~dg  327 (342)
                        .++++|.   +|.+.+
T Consensus       329 ~gPi~ltvAk~~DP~~q~  346 (626)
T KOG3571|consen  329 PGPIKLTVAKCWDPNPQS  346 (626)
T ss_pred             CCCeEEEEeeccCCCCcc
Confidence              3777774   555544

>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains

Probab=85.95  E-value=1.7  Score=35.68  Aligned_cols=43  Identities=14%  Similarity=0.322  Sum_probs=37.1

Q ss_pred             eeeeeeeeccceEEEEEccCCcEEEeeeccceeeecc-cCCcEE
Q psy6995         167 LMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWAT-STNSLR  209 (342)
Q Consensus       167 ~i~ClLGIS~e~lVLIe~~s~~VVFncpc~dVIGWt~-s~~~Lk  209 (342)
                      ..++.|.||.+.|.++++.++++++++|-+.|.=|+. .....+
T Consensus        51 ~~~V~l~vs~~gI~v~~~~t~~~l~~~~i~~Is~~~~~d~~~~~   94 (140)
T PF00640_consen   51 PQKVTLNVSSDGIKVIDPDTGEVLMSHPIRRISFCAVGDPDDKR   94 (140)
T ss_dssp             SEEEEEEEETTEEEEEETTTTCEEEEEEGGGEEEEEESSTTETT
T ss_pred             CeEEEEEEcCCeEEEecCccccccccCCccceEEEEecCCCcce
Confidence            3579999999999999999999999999999988888 444333

; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....

>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain

Probab=84.57  E-value=14  Score=30.33  Aligned_cols=79  Identities=19%  Similarity=0.373  Sum_probs=55.8

Q ss_pred             EEEEEeccCC----CCeeeeeeeeeccceEEEEEccCCcEEEeeeccceeeecccCCcEEEEeecC------c-eEEEEe
Q psy6995         154 CWQVSLEDSK----TGSLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLYHHQG------E-VTRIHM  222 (342)
Q Consensus       154 ~W~V~v~D~s----~~~~i~ClLGIS~e~lVLIe~~s~~VVFncpc~dVIGWt~s~~~LkIyY~rG------E-~i~l~~  222 (342)
                      +|.|.+....    .+..-+|+|.|.++.|.|.+..++..++..|-+.|=-|-..++.  .+++-|      + -..+.+
T Consensus         4 ~f~V~v~~~~~~~~~~l~g~~~L~l~~~~l~L~~~~~~~~~~~Wpl~~lRryG~~~~~--F~fEaGRrc~tG~G~f~f~t   81 (100)
T PF02174_consen    4 VFQVTVQPTELSERCGLSGPYLLCLTPDELILIDPQSGEPILEWPLRYLRRYGRDDGI--FSFEAGRRCPTGEGLFWFQT   81 (100)
T ss_dssp             EEEEEEECEHHHHCSSSEEEEEEEEESSEEEEEETTTTEEEEEEEGGGEEEEEEETTE--EEEEESTTSTTCSEEEEEEE
T ss_pred             EEEEEEEECCCCcCCCceEEEEEEECCCEEEEecCCCCceEEEEEhHHhhhhccCCCE--EEEEECCcCCCCCcEEEEEe
Confidence            6999774443    23345899999999999999999999999999999888664443  333333      3 334454


Q ss_pred             cCCCCCChhhHHHHHHh
Q psy6995         223 REGGGGDRDELMEVVVR  239 (342)
Q Consensus       223 ~e~~~~~~edl~EIV~R  239 (342)
                      .+     +++|-+.|.+
T Consensus        82 ~~-----a~~I~~~v~~   93 (100)
T PF02174_consen   82 PD-----AEEIFETVER   93 (100)
T ss_dssp             ST-----HHHHHHHHHH
T ss_pred             CC-----HHHHHHHHHH
Confidence            44     4666666654

These domains facilitate interaction with the activated tyrosine-phosphorylated insulin receptor. The PTB domain is situated towards the N terminus. Two arginines in this domain are responsible for hydrogen bonding phosphotyrosine residues on a Ac-LYASSNPApY-NH2 peptide in the juxtamembrane region of the insulin receptor. Further interactions via `bridged' water molecules are coordinated by residues an Asn and a Ser residue []. The PTB domain has a compact, 7-stranded beta-sandwich structure, capped by a C-terminal helix. The substrate peptide fits into an L-shaped surface cleft formed from the C-terminal helix and strands 5 and 6 [].; GO: 0005158 insulin receptor binding; PDB: 1XR0_B 1QQG_B 1IRS_A 2V76_D 1MK7_B 2K00_A 1MIZ_B 1MK9_B 1MIX_A 2H7E_A ....

>KOG3129|consensus

Probab=84.30  E-value=1.9  Score=41.36  Aligned_cols=64  Identities=16%  Similarity=0.124  Sum_probs=41.8

Q ss_pred             eEEEEcccchhhhhCCCCCCEEeecccccCCCHHHHHH---H-------------HhccCcEEEEEeCCCCCCCCCcCCC
Q psy6995         271 LVTEVEHMGLAYQEGLKQGCRLICKVAVSTLSHDQMVD---L-------------LKTSSLVTVTVIPALSDGTPRRYAD  334 (342)
Q Consensus       271 ~Vt~VE~~g~Ae~AGLR~G~RLIcg~sV~~lsHeq~vd---l-------------Lrts~~V~v~VipP~~dg~PRRgc~  334 (342)
                      +|.+|-++++|..|||+.||-||-=.+|.+.+|..+..   .             +|...+|.+.+.|--=.|+-=-||.
T Consensus       142 ~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~L~ltP~~W~GrGLLGC~  221 (231)
T KOG3129|consen  142 VVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVVLSLTPKKWQGRGLLGCN  221 (231)
T ss_pred             EEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEEEEeCcccccCCcceeee
Confidence            78999999999999999999994434455555543221   1             1233455666666655565556665

>KOG3580|consensus

Probab=83.81  E-value=1.1  Score=48.79  Aligned_cols=44  Identities=27%  Similarity=0.354  Sum_probs=41.6

Q ss_pred             eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC
Q psy6995         271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS  314 (342)
Q Consensus       271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~  314 (342)
                      ||..|..+++|++-||+-||.|  ||.+..-+|.-|++|.+|-..+
T Consensus       432 FVaGvqegspA~~eGlqEGDQIL~VN~vdF~nl~REeAVlfLL~lP  477 (1027)
T KOG3580|consen  432 FVAGVQEGSPAEQEGLQEGDQILKVNTVDFRNLVREEAVLFLLELP  477 (1027)
T ss_pred             EEeecccCCchhhccccccceeEEeccccchhhhHHHHHHHHhcCC
Confidence            9999999999999999999999  9999999999999999997544

>PF12812 PDZ_1: PDZ-like domain

Probab=83.50  E-value=0.79  Score=36.62  Aligned_cols=49  Identities=24%  Similarity=0.447  Sum_probs=40.0

Q ss_pred             CCCCeEEcCCceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc
Q psy6995         260 GQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT  312 (342)
Q Consensus       260 gqLGFhV~~EG~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt  312 (342)
                      -||++.+.  |+++.+-.|++|++.|+..|.-|  ||++++.+|  ++.++.++.
T Consensus        24 R~~~~~~~--gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~L--d~f~~vvk~   74 (78)
T PF12812_consen   24 RQYGIPVG--GVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDL--DDFIKVVKK   74 (78)
T ss_pred             HHhCCCCC--EEEEEecCCChhhhCCCCCCeEEEeECCcCCcCH--HHHHHHHHh
Confidence            46777765  89999999999999999999999  999999876  455555543

>KOG3938|consensus

Probab=81.60  E-value=2.9  Score=41.65  Aligned_cols=75  Identities=16%  Similarity=0.292  Sum_probs=57.7

Q ss_pred             ceEEEeecCCCCCCCeEEcCCc----eEEEEcccchhhhh-CCCCCCEE--eecccccCCCHHHHHHHHhccC---cEEE
Q psy6995         249 AQELTLKRNGLGQLGFHVQPDG----LVTEVEHMGLAYQE-GLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS---LVTV  318 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~EG----~Vt~VE~~g~Ae~A-GLR~G~RL--Icg~sV~~lsHeq~vdlLrts~---~V~v  318 (342)
                      ++|+.+..+. +.||..+-++|    ||-.+-+++.-.+- -+.+||-|  |||++++.--|-|+..+|+.-.   .-++
T Consensus       127 ~kEv~v~Kse-dalGlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftl  205 (334)
T KOG3938|consen  127 AKEVEVVKSE-DALGLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTL  205 (334)
T ss_pred             ceeEEEEecc-cccceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEE
Confidence            5566555443 77888998786    88888888876543 57889999  9999999999999999998533   4667


Q ss_pred             EEeCCC
Q psy6995         319 TVIPAL  324 (342)
Q Consensus       319 ~VipP~  324 (342)
                      .+|.|-
T Consensus       206 rLiePk  211 (334)
T KOG3938|consen  206 RLIEPK  211 (334)
T ss_pred             Eeeccc
Confidence            777663

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=80.74  E-value=1.8  Score=42.44  Aligned_cols=42  Identities=14%  Similarity=0.169  Sum_probs=33.6

Q ss_pred             hhhhCCCCCCEE--eecccccCCCHH-HHHHHHhccCcEEEEEeC
Q psy6995         281 AYQEGLKQGCRL--ICKVAVSTLSHD-QMVDLLKTSSLVTVTVIP  322 (342)
Q Consensus       281 Ae~AGLR~G~RL--Icg~sV~~lsHe-q~vdlLrts~~V~v~Vip  322 (342)
                      =.++|||+||-+  |||+++.+..+. ++.+.|++...++|+|..
T Consensus       220 F~~~GLq~GDva~sING~dL~D~~qa~~l~~~L~~~tei~ltVeR  264 (276)
T PRK09681        220 FDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLR  264 (276)
T ss_pred             HHHcCCCCCCEEEEeCCeeCCCHHHHHHHHHHhccCCeEEEEEEE
Confidence            478999999999  999999865542 466777888888888853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	342
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	2e-17
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	2e-17
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	4e-07
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	1e-06
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	1e-06
2d90_A	102	PDZ domain containing protein 1; structural genomi	2e-06
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	3e-06
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	3e-06
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	4e-06
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	7e-06
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	8e-06
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	2e-05
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	2e-05
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	3e-05
2ego_A	96	General receptor for phosphoinositides 1- associat	3e-05
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	3e-05
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	4e-05
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	4e-05
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	5e-05
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	5e-05
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	8e-05
1srq_A	341	RAP1GAP, GTPase-activating protein 1; mixed alpha-	1e-04
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	1e-04
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	1e-04
3khf_A	99	Microtubule-associated serine/threonine-protein ki	1e-04
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	1e-04
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	1e-04
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	2e-04
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	2e-04
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	2e-04
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	2e-04
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	3e-04
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	3e-04
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	3e-04
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	3e-04
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	4e-04
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	4e-04
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	4e-04
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	5e-04
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	7e-04

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 75.6 bits (186), Expect = 2e-17
 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 239 RLRAATPGSPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKV 296
                T G+    L  + +   QLGF VQ +G++  +   G+A + G++ G R+  I   
Sbjct: 3   HHHLETMGNVTTVLIRRPDLRYQLGFSVQ-NGIICSLMRGGIAERGGVRVGHRIIEINGQ 61

Query: 297 AVSTLSHDQMVDLLKTSS-LVTVTVIPA 323
           +V    H+++V +L  +   + +  +PA
Sbjct: 62  SVVATPHEKIVHILSNAVGEIHMKTMPA 89

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 75.0 bits (185), Expect = 2e-17
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 252 LTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDL 309
           +T+ ++  G +GF  + +G +T +     A + GL     +  I    V  L   Q+ D+
Sbjct: 8   ITMHKDSTGHVGFIFK-NGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADI 66

Query: 310 LKTS-SLVTVTVIPA 323
           L TS ++VT+T++PA
Sbjct: 67  LSTSGTVVTITIMPA 81

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 7/86 (8%)

Query: 243 ATPGSPAQE--LTLKRNGLGQLGFHVQPDG--LVTEVEHMGLAYQEGLKQGCRL--ICKV 296
            + GS   +  + ++++  G  GF V  D   LV  V   G A + G+K+G R+  +   
Sbjct: 1   GSSGSSGVQRCVIIQKDQHG-FGFTVSGDRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGT 59

Query: 297 AVSTLSHDQMVDLLKTSSLVTVTVIP 322
            V+  SH ++V L+K+ + V +T++ 
Sbjct: 60  MVTNSSHLEVVKLIKSGAYVALTLLG 85

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 49.2 bits (116), Expect = 1e-06
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 235 EVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL-- 292
           +  V+L   +       L  + +   QLGF VQ +G++  +   G+A + G++ G R+  
Sbjct: 283 QTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQ-NGIICSLMRGGIAERGGVRVGHRIIE 341

Query: 293 ICKVAVSTLSHDQMVDLLKTSS-LVTVTVIPA 323
           I   +V   +H+++V  L  S   + +  +PA
Sbjct: 342 INGQSVVATAHEKIVQALSNSVGEIHMKTMPA 373

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 251 ELTLKRNGLGQLGFHVQPDG-----LVTEVEHMGLAYQEGLKQGCRLIC--KVAVSTLSH 303
           E  L +      GF ++ +      L+  +E    A + GL  G R++    V V    H
Sbjct: 4   ESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEH 63

Query: 304 DQMVDLLKTS-SLVTVTVIPALSD 326
            Q+V+L++ S + VT+ V+   S 
Sbjct: 64  AQVVELVRKSGNSVTLLVLDGDSY 87

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 244 TPGSPAQELTLKRNGLGQLGFHV-----QPDGLVTEVEHMGLAYQEGLKQGCRLIC--KV 296
           + GS  + + +K+   G  GF++     Q   ++ ++E    A   GLK    ++     
Sbjct: 2   SSGSSGRVVVIKKGSNG-YGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGK 60

Query: 297 AVSTLSHDQMVDLLKTS-SLVTVTVIPALSD 326
           +V  L HD +V++++      T+ V+   ++
Sbjct: 61  SVEALDHDGVVEMIRKGGDQTTLLVLDKEAE 91

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 251 ELTLKRNGLGQLGFHVQPDG-----LVTEVEHMGLAYQEGLKQGCRLIC--KVAVSTLSH 303
           E  L +      GF ++ +      L+  +E    A + GL  G R++    V V    H
Sbjct: 16  ECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEH 75

Query: 304 DQMVDLLKTS-SLVTVTVIPALSD 326
            Q+V+L++ S + VT+ V+   S 
Sbjct: 76  AQVVELVRKSGNSVTLLVLDGDSY 99

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 12/90 (13%)

Query: 243 ATPGSPAQE----LTLKRNGLGQLGFHVQ---PDGL---VTEVEHMGLAYQEGLKQGCRL 292
            + GS   +    + ++++  G+LGF V+     GL   V++VE    A + GL  G ++
Sbjct: 1   GSSGSSGSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKI 60

Query: 293 --ICKVAVSTLSHDQMVDLLKTSSLVTVTV 320
             +  +++ + +    V +L +SS + + V
Sbjct: 61  TEVNGLSLESTTMGSAVKVLTSSSRLHMMV 90

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 11/91 (12%)

Query: 246 GSPAQE--LTLKRNGLGQLGFHV-----QPDGLVTEVEHMGLAYQEGLKQGCRLIC--KV 296
           GSP Q   + +K+   G  GF++     Q   ++ ++E    A   GLK    ++     
Sbjct: 1   GSPHQPRVVVIKKGSNG-YGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGK 59

Query: 297 AVSTLSHDQMVDLLKTS-SLVTVTVIPALSD 326
           +V  L HD +V++++      T+ V+    +
Sbjct: 60  SVEALDHDGVVEMIRKGGDQTTLLVLDKELE 90

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 43.6 bits (103), Expect = 7e-06
 Identities = 16/86 (18%), Positives = 38/86 (44%), Gaps = 7/86 (8%)

Query: 245 PGSPAQELTLKRNGLGQLGFHVQPDG---LVTEVEHMGLAYQEG-LKQGCRL--ICKVAV 298
            G   + + +++     LG  V+ +    +++ +   G A + G L +G  +  I  + +
Sbjct: 22  GGETVKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEI 81

Query: 299 STLSHDQMVDLLKTSS-LVTVTVIPA 323
                +++ DLL      +T  +IP+
Sbjct: 82  RGKDVNEVFDLLSDMHGTLTFVLIPS 107

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 44.4 bits (105), Expect = 8e-06
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 251 ELTLKRNGLGQLGFHVQPDG---LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQ 305
           E+ L ++  G++G  ++       V  V+    A   GL+ G ++  I     +  S D+
Sbjct: 7   EVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDK 66

Query: 306 MVDLLKTSSLVTVTVI 321
              +LK +    +T+ 
Sbjct: 67  AHKVLKQAFGEKITMT 82

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 8/76 (10%)

Query: 253 TLKRNGLGQLGFHV------QPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHD 304
           TLK+    QLGF++      Q    +++V     A++ GL++G ++  +  V    + H 
Sbjct: 20  TLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHS 79

Query: 305 QMVDLLKTSSLVTVTV 320
           + V++LKT+  +++ V
Sbjct: 80  KAVEILKTAREISMRV 95

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 12/110 (10%)

Query: 245 PGSPAQE--LTLKRNGLGQLGFHV------QPDGLVTEVEHMGLAYQEG-LKQGCRL--I 293
           PGS      + L +     LG  V           V+ +   G+A +   L  G  +  +
Sbjct: 2   PGSFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAV 61

Query: 294 CKVAVSTLSHDQMVDLLK-TSSLVTVTVIPALSDGTPRRYADLKMWRSVV 342
             + ++   HD+++ LLK     V + V   L   + +  + +     V 
Sbjct: 62  NGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVT 111

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 6/86 (6%)

Query: 250 QELTLKRNGLGQLGFHVQPDG--LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQ 305
           +++T+ R   G  GF +  D    V  V+  G A + GL+Q   +  + +  V      +
Sbjct: 5   RQITIPRGKDG-FGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVE 63

Query: 306 MVDLLKTS-SLVTVTVIPALSDGTPR 330
           +   +++  S + + V   +    P 
Sbjct: 64  LAHEIRSCPSEIILLVWRMVPQVKPG 89

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 16/87 (18%)

Query: 252 LTLKRNGLGQLGFHVQPDGL-------------VTEVEHMGLAYQEGLKQGCRLIC--KV 296
           LTL++      GF +Q  GL             V  V     A   GL  G  +     +
Sbjct: 8   LTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGL 67

Query: 297 AVSTLSHDQMVDLLKTS-SLVTVTVIP 322
            V  + H ++VD++K S +++ +  + 
Sbjct: 68  NVEGIRHREIVDIIKASGNVLRLETLY 94

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 16/97 (16%)

Query: 241 RAATPGSPAQELTLKRNGLGQLGFHVQPDG-------------LVTEVEHMGLAYQEGLK 287
            +    S  + +T+++      GF +Q                L+ +++    A+  GL+
Sbjct: 8   LSDFSWSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQ 67

Query: 288 QGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTVI 321
            G  L  I  V+    ++ Q+VDL+++S +L+T+  +
Sbjct: 68  AGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIETL 104

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 20/94 (21%), Positives = 46/94 (48%), Gaps = 11/94 (11%)

Query: 239 RLRAATPGSPAQE---LTLKRNGLGQLGFHV------QPDGLVTEVEHMGLAYQEGLKQG 289
              + +PG+   +   + +   G   LG  +      +P   ++ V+   L+ + GL+ G
Sbjct: 3   SGSSGSPGNRENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIG 62

Query: 290 CRLI--CKVAVSTLSHDQMVDLLKTSSLVTVTVI 321
            +++    V  S L H + V++LK+S  +T++++
Sbjct: 63  DQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIV 96

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSL-VTVTVIPALSDG 327
            V  V+  GLA ++GLK G  +  I   A   L+   + D L   SL + V   P L +G
Sbjct: 47  YVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRTYPELEEG 106

Query: 328 TP 329
             
Sbjct: 107 VE 108

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 9/79 (11%)

Query: 252 LTLKRNGLGQLGFHV-----QPDGLVTEVEHMGLAYQEGLKQGCRLIC--KVAVSTLSHD 304
             L +   G  GFH+      P   + EV+  G A   GL+    +I    V V    ++
Sbjct: 7   CRLAKGENG-YGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYE 65

Query: 305 QMVDLLKTS-SLVTVTVIP 322
           ++VD +++S   VT+ V  
Sbjct: 66  KVVDRIQSSGKNVTLLVCG 84

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 14/92 (15%)

Query: 243 ATPGSPAQ---------ELTLKRNGLGQLGFHVQPDG--LVTEVEHMGLAYQEGLKQGCR 291
            + GS  +         ++T++R   G  GF +  D    V  V+  G A + GL+Q   
Sbjct: 1   GSSGSSGEGDPENGEKLQITIRRGKDG-FGFTICCDSPVRVQAVDSGGPAERAGLQQLDT 59

Query: 292 L--ICKVAVSTLSHDQMVDLLKTSSLVTVTVI 321
           +  + +  V      ++   +++     + ++
Sbjct: 60  VLQLNERPVEHWKCVELAHEIRSCPSEIILLV 91

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 39.5 bits (93), Expect = 8e-05
 Identities = 14/76 (18%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 252 LTLKRNGLGQLGFHVQPDG--LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMV 307
           + + R   G  GF +      +++ V     A   GL+ G ++  + ++ V   SH+ +V
Sbjct: 6   VEVARGRAG-YGFTLSGQAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVV 64

Query: 308 DLLKTS-SLVTVTVIP 322
            L+     ++ + +  
Sbjct: 65  KLIGKCSGVLHMVIAE 80

>1srq_A RAP1GAP, GTPase-activating protein 1; mixed alpha-beta, signaling protein; 2.90A {Homo sapiens} SCOP: e.55.1.1 PDB: 3brw_A* Length = 341

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 17 EHQNWLGMDDNLGPVAISLKREKVEYTQESQQMYRYRLLIRTSELKT 63
          EH N+  +D  LG +  SLK + +      Q+  R  L  +      
Sbjct: 24 EHFNYYSLDTALGHLVFSLKYDVI----GDQEHLRLLLRTKCRTYHD 66

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 8/106 (7%)

Query: 244 TPGSPAQELTLKRNGLGQLGFHVQ------PDGLVTEVEHMGLAYQEGLKQGCRLIC--K 295
             G   +++ L       LG  ++          +T V+    A   GLK G +++    
Sbjct: 16  LQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNG 75

Query: 296 VAVSTLSHDQMVDLLKTSSLVTVTVIPALSDGTPRRYADLKMWRSV 341
            +   + HD+ V LLK+S  + +TV         R   D   W + 
Sbjct: 76  RSFLNILHDEAVRLLKSSRHLILTVKDVGRLPHARTTVDETKWIAS 121

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 14/103 (13%)

Query: 242 AATPGSPAQELTLKRN-----GLGQLGFHVQPDG--LVTEVEHMGLAYQEGLKQGCRL-- 292
           + + GS ++  +  R        G LGF ++ +    V  ++    A   G K+G  +  
Sbjct: 3   SGSSGSASKRWSPPRGIHFTVEEGDLGFTLRGNTPVQVHFLDPHCSASLAGAKEGDYIVS 62

Query: 293 ICKVAVSTLSHDQMVDLLKTS-----SLVTVTVIPALSDGTPR 330
           I  V    L+  +++ LLK+       +  V+++ + S    +
Sbjct: 63  IQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLLDSTSSMHNK 105

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 17/92 (18%)

Query: 247 SPAQELTLKRNGLGQLGFHVQ-------------PDGLVTEVEHMGLAYQEGLKQGCRLI 293
           S    + +  +G    GF ++                +V  VE    A + GL+ G  + 
Sbjct: 1   SMRPPIVIHSSGKK-YGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLIT 59

Query: 294 C--KVAVSTLSHDQMVDLLKTS-SLVTVTVIP 322
                +V  L H  +V+LL  S + +++    
Sbjct: 60  HINGESVLGLVHMDVVELLLKSGNKISLRTTA 91

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 242 AATPGSPAQELTLKRNGLGQLGFHVQPDG-----LVTEVEHMGLAYQEGLKQGCRLIC-- 294
           ++      +   L + G    GF ++         +T++   G+A + G+     LI   
Sbjct: 2   SSGSSGQPRLCYLVKEGGS-YGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVN 60

Query: 295 KVAVSTLSHDQMVDLLKTS-SLVTVTVI 321
              V   SH+++V+ +K S S V   ++
Sbjct: 61  GENVEDASHEEVVEKVKKSGSRVMFLLV 88

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 241 RAATPGSPAQELTLKRNGLGQLGFHV---QPDGL---VTEVEHMGLAYQEGLKQGCRLIC 294
                    +E+ L R     LG  V      G    ++ +   G A   GL+ G  ++ 
Sbjct: 77  LTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVR 136

Query: 295 --KVAVSTLSHDQMVDLLKTSSLVTVTV 320
               ++S+ +H+++++L++T   V++ V
Sbjct: 137 INGYSISSCTHEEVINLIRTEKTVSIKV 164

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 253 TLKRNGLGQLGFHV-----QPDGLVTEVEHMGLAYQEGLKQGCRLIC--KVAVSTLSHDQ 305
           T+K+   G  GF++     +P   +  V+    A   GL+   R++    V +    H  
Sbjct: 14  TMKKGPSG-YGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGD 72

Query: 306 MVDLLKTS-SLVTVTVIPALSD 326
           +V  ++       + V+   +D
Sbjct: 73  VVSAIRAGGDETKLLVVDRETD 94

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 9/83 (10%)

Query: 252 LTLKRNGLGQLGFHV-----QPDGLVTEVEHMGLAYQEGLKQGCRLIC--KVAVSTLSHD 304
             L++   G  GF++     +P   +  V+    A + GL+   RLI      V  L H 
Sbjct: 8   CHLRKGPQG-YGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHA 66

Query: 305 QMVDLLKTS-SLVTVTVIPALSD 326
           ++V  +K       + V+   + 
Sbjct: 67  EVVASIKAREDEARLLVVGPSTR 89

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 9/88 (10%)

Query: 252 LTLKRNGLGQLGFHV-----QPDGLVTEVEHMGLAYQEGLKQGCRLI--CKVAVSTLSHD 304
            T+K+   G  GF++     +P   +  V+    A   GL+   R++    V +    H 
Sbjct: 13  CTMKKGPSG-YGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHG 71

Query: 305 QMVDLLKTS-SLVTVTVIPALSDGTPRR 331
            +V  ++       + V+   +D   ++
Sbjct: 72  DVVSAIRAGGDETKLLVVDRETDEFFKK 99

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 12/86 (13%)

Query: 252 LTLKRNGLGQLGFHV--------QPDGLVTEVEHMGLAYQEGLKQGCRLIC--KVAVSTL 301
           L L++   G  GF +        +P   + EV+    A + G++ G RL+     +V  L
Sbjct: 7   LHLEKGPQG-FGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGL 65

Query: 302 SHDQMVDLLKTS-SLVTVTVIPALSD 326
            H++ V  ++   S V++TV+   +D
Sbjct: 66  GHEETVSRIQGQGSCVSLTVVDPEAD 91

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 5/79 (6%)

Query: 255 KRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRLICKV---AVSTLSHDQMVDLLK 311
            R G  +          V +V+  G A++ GL  G R+I KV   +V   ++ Q++ L++
Sbjct: 48  NRGGKQRNRLEPMDTIFVKQVKEGGPAFEAGLCTGDRII-KVNGESVIGKTYSQVIALIQ 106

Query: 312 TS-SLVTVTVIPALSDGTP 329
            S + + ++V+P  S  + 
Sbjct: 107 NSDTTLELSVMPKDSGPSS 125

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 247 SPAQELTLKRNGLGQLGFHVQPDG--LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLS 302
           S  + +         LGF ++ +    V  ++    A   G ++G  +  I  V    L+
Sbjct: 22  SMPRSIRFTAEEGD-LGFTLRGNAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLT 80

Query: 303 HDQMVDLLKTSSLVTVTV 320
             +++ LLK+     + +
Sbjct: 81  LSEVMKLLKSFGEDEIEM 98

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 8/76 (10%)

Query: 247 SPAQELTLKRNGLGQLGFHVQ-----PDGL-VTEVEHMGLAYQEGLKQGCRL--ICKVAV 298
           S +  LT+   G    GF +         + VT+V   G A    L+ G  +  I   + 
Sbjct: 3   SGSSGLTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSA 62

Query: 299 STLSHDQMVDLLKTSS 314
             + H +    ++ S+
Sbjct: 63  ENMLHAEAQSKIRQSA 78

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 253 TLKRNGLGQLGFHVQPDG-----LVTEVEHMGLAYQEG-LKQGCRLIC--KVAVSTLSHD 304
            L +N    LG  ++ D      +V  +   G A + G +  G  L     + V     +
Sbjct: 9   RLVKNREP-LGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPE 67

Query: 305 QMVDLLKTSS-LVTVTVIPALSDGTP 329
           +++ +L  S   +T  +IP   + TP
Sbjct: 68  EIIQILAQSQGAITFKIIPGSKEETP 93

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 9/89 (10%)

Query: 242 AATPGSPAQELTLKR-NGLGQLGFHV---QPDGL---VTEVEHMGLAYQEGLKQGCRLIC 294
           ++      + ++L+R      LGF +      G+   V+ VE   LA +EGL+ G +++ 
Sbjct: 2   SSGSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILR 61

Query: 295 --KVAVSTLSHDQMVDLLKTSSLVTVTVI 321
               +++ ++H + V  LK S  + ++V 
Sbjct: 62  VNDKSLARVTHAEAVKALKGSKKLVLSVY 90

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 245 PGSPAQELTLKRNGLGQLGFHVQPDG----LVTEVEHMGLAYQEG-LKQGCRL--ICKVA 297
            G   + +  ++     +G  ++ +      V  + H G+ +++G L  G  +  I    
Sbjct: 9   SGHMVRLIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTN 68

Query: 298 VSTLSHDQMVDLLKTSS-LVTVTVIPA 323
           V+  S DQ+   +K +  ++++ VIP 
Sbjct: 69  VTNHSVDQLQKAMKETKGMISLKVIPN 95

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 271 LVTEVEHMGLAYQEG-LKQGCRLIC--KVAVSTLSHDQMVDLLKTSS-LVTVTVIPA 323
            ++ +   GLA   G L     ++    + VS  S DQ+ D++  +S  + +TV PA
Sbjct: 68  FISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPA 124

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 272 VTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLV-TVTVIPAL 324
           V  V+  GLA ++GLK G  +  I   A   L+   + D L   SL   V   P L
Sbjct: 39  VNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRTYPEL 94

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 11/101 (10%)

Query: 242 AATPGSPAQELTLKRNGLGQLGFHV-----QPDG--LVTEVEHMGLAYQEG-LKQGCRL- 292
                S    + + +     LG  +     +      +  ++   +  + G L  G  + 
Sbjct: 9   TVANASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHIL 68

Query: 293 -ICKVAVSTLSHDQMVDLLK-TSSLVTVTVIPALSDGTPRR 331
            I   ++   S  +   LL   S  V + ++P      P R
Sbjct: 69  SIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQRPLR 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	342
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.67
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.37
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.36
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.36
2ego_A	96	General receptor for phosphoinositides 1- associat	99.36
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.32
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.31
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.31
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.31
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.31
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.3
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.29
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	99.29
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.29
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.29
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.28
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.28
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.27
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.26
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.26
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.25
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.25
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.25
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.24
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.24
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.24
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.23
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.23
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.22
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	99.22
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.22
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	99.22
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.22
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.22
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.22
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.22
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.21
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.21
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.21
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.2
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.2
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.2
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.19
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	99.19
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	99.19
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	99.19
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.19
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.18
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.18
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.18
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.18
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.18
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.17
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.17
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	99.17
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.17
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.17
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.17
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.17
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	99.17
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.17
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.16
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.16
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	99.16
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.16
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.16
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.16
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.16
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.15
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.15
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.15
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	99.15
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	99.14
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.14
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.14
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.14
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	99.14
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.13
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.13
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.13
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.13
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.13
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.13
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.12
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.12
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.12
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.11
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.11
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.11
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	99.11
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.1
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	99.1
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.1
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.1
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.09
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.09
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	99.09
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.09
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.09
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.09
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.09
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.08
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.08
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.07
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.07
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.07
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.07
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.06
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.05
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.05
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.04
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.04
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.04
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	99.04
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.04
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.04
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	99.03
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.03
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	99.02
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.02
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	99.02
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.01
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	99.01
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	99.01
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.01
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	98.99
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	98.99
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	98.99
4amh_A	106	Disks large homolog 1; permutation, protein foldin	98.98
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	98.97
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	98.96
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	98.96
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	98.95
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	98.95
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	98.95
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	98.94
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	98.47
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	98.93
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	98.92
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	98.9
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	98.9
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.89
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	98.89
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	98.88
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	98.88
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	98.88
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	98.86
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	98.86
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	98.85
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	98.84
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.84
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	98.83
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.83
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	98.82
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	98.81
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.81
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	98.78
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	98.78
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	98.76
1srq_A	341	RAP1GAP, GTPase-activating protein 1; mixed alpha-	98.7
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.67
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.66
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.66
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.66
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	98.65
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.61
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.6
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	98.54
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.49
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.45
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.44
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	97.98
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	97.94
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	97.88
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	97.83
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	97.82
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	97.77
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	97.63
4fgm_A	597	Aminopeptidase N family protein; structural genomi	97.62
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	97.59
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	97.57
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	97.51
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	97.5
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	97.46
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	97.43
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	97.42
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	97.38
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	97.37
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	97.35
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	97.34
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	97.33
3k50_A	403	Putative S41 protease; structural genomics, joint	97.31
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	97.3
2kl1_A	94	YLBL protein; structure genomics, structural genom	97.28
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	97.2
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	97.1
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	97.05
1k32_A	1045	Tricorn protease; protein degradation, substrate g	96.96
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	96.7
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	96.32
4f7g_A	222	Talin-1; alpha-helix bundle, integrin activation,	95.82
1mix_A	206	Talin; focal adhesion, integrin binding, FERM doma	95.58
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	94.07
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	93.28
4dxa_B	322	KREV interaction trapped protein 1; GTPase, FERM,	90.82
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	83.1
3au4_A	555	Myosin-X; protein-protein complex, motor protein c	82.65
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	80.47

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.67  E-value=2.1e-16  Score=123.89  Aligned_cols=76  Identities=29%  Similarity=0.493  Sum_probs=70.8

Q ss_pred             CCceEEEeecCCCCCCCeEEcCCceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEEeCC
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTVIPA  323 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~EG~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~VipP  323 (342)
                      .+.+.++|+|+..++|||++. +|.|+.|.++|+|++|||++||+|  |||++|..++|+|++++||.+. .|+|+|+|.
T Consensus         3 ~~~r~v~l~k~~~g~~Gf~i~-~g~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~V~L~v~p~   81 (82)
T 1r6j_A            3 MDPRTITMHKDSTGHVGFIFK-NGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA   81 (82)
T ss_dssp             TCCEEEEEECCTTSCCCEEEE-TTEEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEEC
T ss_pred             CceEEEEEEECCCCCeEEEEE-CCEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEEEEeC
Confidence            457899999998899999997 789999999999999999999999  9999999999999999999665 799999986

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.37  E-value=2.1e-12  Score=106.90  Aligned_cols=81  Identities=20%  Similarity=0.362  Sum_probs=69.4

Q ss_pred             CceEEEeecCCCCCCCeEEcCC-----------------c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHH
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD-----------------G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMV  307 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E-----------------G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~v  307 (342)
                      +.+.++|.|.+.++|||.+...                 | +|..|.++|+|++||||+||+|  |||++|..++|++++
T Consensus        27 ~~r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~  106 (132)
T 3l4f_D           27 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVV  106 (132)
T ss_dssp             CCCEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGTCCTTCEEEEESSSBCTTSCHHHHH
T ss_pred             CCEEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence            5678889998888999999543                 1 8999999999999999999999  999999999999999


Q ss_pred             HHHhccC-cEEEEEeCCCCCCC
Q psy6995         308 DLLKTSS-LVTVTVIPALSDGT  328 (342)
Q Consensus       308 dlLrts~-~V~v~VipP~~dg~  328 (342)
                      .+|+... .|.|+|++..+...
T Consensus       107 ~~l~~~g~~v~l~v~~~~~~~~  128 (132)
T 3l4f_D          107 NMIRQGGNTLMVKVVMVTRHPD  128 (132)
T ss_dssp             HHHHHTTTEEEEEEECCCC---
T ss_pred             HHHHcCCCEEEEEEEECCCCCC
Confidence            9999544 78999988765443

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.36  E-value=3.8e-12  Score=96.99  Aligned_cols=78  Identities=22%  Similarity=0.333  Sum_probs=68.8

Q ss_pred             CceEEEeecCCCCCCCeEEcCC----c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD----G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVT  319 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E----G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v~  319 (342)
                      .++.++|.|.. .+|||.+...    | +|++|.++++|++|||++||+|  |||++|.+.+|+++.++|+.. ..|+|+
T Consensus         4 ~~r~v~l~k~~-~g~G~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~   82 (90)
T 2he4_A            4 RPRLCHLRKGP-QGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL   82 (90)
T ss_dssp             CCEEEEEECBT-TBCCEEEEECSSSSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEEEE
T ss_pred             CcEEEEEEECC-CCccEEEEccCCCCCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEE
Confidence            36788898876 5899999644    4 7999999999999999999999  999999999999999999975 479999


Q ss_pred             EeCCCCC
Q psy6995         320 VIPALSD  326 (342)
Q Consensus       320 VipP~~d  326 (342)
                      |..+..+
T Consensus        83 v~r~~~~   89 (90)
T 2he4_A           83 VVGPSTR   89 (90)
T ss_dssp             EECCCCC
T ss_pred             EEccCCC
Confidence            9988764

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.36  E-value=3.1e-12  Score=98.28  Aligned_cols=81  Identities=22%  Similarity=0.415  Sum_probs=67.0

Q ss_pred             CCceEEEeecCCCCCCCeEEcCC----c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-cEE
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQPD----G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVT  317 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~E----G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~  317 (342)
                      .+.+++.|.|++ ..|||.+..+    + +|..|.++|+|++|| |++||+|  |||++|...+|++++++|+.+. .|+
T Consensus         3 ~~~r~v~l~k~~-~~lG~~i~~~~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~   81 (93)
T 3o46_A            3 DSVKIIRLVKNR-EPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAIT   81 (93)
T ss_dssp             -CCEEEEEEESS-SCCCEEEEECTTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEEEE
T ss_pred             ccEEEEEEEeCC-CCccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            356888899986 5999999754    3 899999999999999 9999999  9999999999999999998655 789


Q ss_pred             EEEeCCCCCCC
Q psy6995         318 VTVIPALSDGT  328 (342)
Q Consensus       318 v~VipP~~dg~  328 (342)
                      |+|+|...+..
T Consensus        82 l~v~~~~~~~~   92 (93)
T 3o46_A           82 FKIIPGSKEET   92 (93)
T ss_dssp             EEEECC-----
T ss_pred             EEEEeCCCCCC
Confidence            99998765443

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.36  E-value=3e-12  Score=99.04  Aligned_cols=76  Identities=24%  Similarity=0.398  Sum_probs=67.3

Q ss_pred             CceEEEeecCCCCCCCeEEcCC------------c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD------------G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT  312 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E------------G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt  312 (342)
                      ..++++|.|...+.|||.+...            | +|..|.++++|++|||++||+|  |||++|.+++|+++.++|+.
T Consensus         4 ~~r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~   83 (96)
T 2ego_A            4 QRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKA   83 (96)
T ss_dssp             CEEEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             ccEEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            4678899998878999999851            1 8999999999999999999999  99999999999999999985


Q ss_pred             cC-cEEEEEeCC
Q psy6995         313 SS-LVTVTVIPA  323 (342)
Q Consensus       313 s~-~V~v~VipP  323 (342)
                      .. .|+|+|++.
T Consensus        84 ~~~~v~l~v~~~   95 (96)
T 2ego_A           84 SGNVLRLETLYG   95 (96)
T ss_dssp             TTTEEEEEEECC
T ss_pred             CCCeEEEEEEEC
Confidence            44 788888864

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.32  E-value=1.1e-11  Score=94.62  Aligned_cols=78  Identities=26%  Similarity=0.357  Sum_probs=68.2

Q ss_pred             CCceEEEeecCCCCCCCeEEcCC----c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-CcEE
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQPD----G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVT  317 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~E----G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~  317 (342)
                      |++.+++|.|.....|||.+...    | +|.+|.++|+|++|| |++||+|  |||+++..++|+++..+++.. ..|.
T Consensus         3 ~~~~~v~l~k~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   82 (92)
T 2qg1_A            3 SDTLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVT   82 (92)
T ss_dssp             -CEEEEEEECCTTSCCSEEEECCSSSCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEE
T ss_pred             ceEEEEEEEeCCCCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            57889999998778999999542    4 799999999999999 9999999  999999999999999999854 4789


Q ss_pred             EEEeCCC
Q psy6995         318 VTVIPAL  324 (342)
Q Consensus       318 v~VipP~  324 (342)
                      |+|..+.
T Consensus        83 l~v~R~~   89 (92)
T 2qg1_A           83 LEVGRIS   89 (92)
T ss_dssp             EEEECCC
T ss_pred             EEEEccc
Confidence            9988764

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.31  E-value=4.7e-12  Score=100.05  Aligned_cols=78  Identities=21%  Similarity=0.381  Sum_probs=67.3

Q ss_pred             CceEEEeecCCCCCCCeEEcCC-----------------c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHH
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD-----------------G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMV  307 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E-----------------G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~v  307 (342)
                      +.+.++|.|...++|||.+...                 | +|+.|.++++|++|||++||+|  |||++|.+++|++++
T Consensus         7 ~~~~v~l~~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~   86 (109)
T 1q3o_A            7 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVV   86 (109)
T ss_dssp             EEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CcEEEEEEECCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence            4577889888889999999643                 2 7999999999999999999999  999999999999999


Q ss_pred             HHHhccC-cEEEEEeCCCC
Q psy6995         308 DLLKTSS-LVTVTVIPALS  325 (342)
Q Consensus       308 dlLrts~-~V~v~VipP~~  325 (342)
                      .+|+... .|.|+|+++.+
T Consensus        87 ~~l~~~~~~v~l~v~~~~~  105 (109)
T 1q3o_A           87 NMIRQGGNTLMVKVVMVTR  105 (109)
T ss_dssp             HHHHHTTTEEEEEEEEEEC
T ss_pred             HHHHhCCCEEEEEEEECCC
Confidence            9998544 68888877643

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.31  E-value=8.9e-12  Score=97.28  Aligned_cols=74  Identities=27%  Similarity=0.496  Sum_probs=63.8

Q ss_pred             ceEEEeecC-CCCCCCeEEcCCceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEEeCC
Q psy6995         249 AQELTLKRN-GLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTVIPA  323 (342)
Q Consensus       249 t~El~LrR~-~~gqLGFhV~~EG~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~VipP  323 (342)
                      ...++++|+ ...+|||.+. .|+|++|.++|+|++||||+||+|  |||++|...+|++++++|+... .|.|+++|-
T Consensus        12 ~~~~~i~~~~~~~~lG~~~~-~G~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~v~p~   89 (90)
T 1y7n_A           12 VTTVLIRRPDLRYQLGFSVQ-NGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA   89 (90)
T ss_dssp             CEEEEEEESSTTSCCCEEEE-TTEEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEEECC
T ss_pred             cceEEEEeCCCccccCeEec-CCEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            355566665 4489999996 579999999999999999999999  9999999999999999998544 788888864

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.31  E-value=5.6e-12  Score=99.35  Aligned_cols=80  Identities=19%  Similarity=0.286  Sum_probs=69.0

Q ss_pred             CceEEEeecCCCCCCCeEEcCC-----c-eEEEEcccchhhhh-CCCCCCEE--eecccccCCCHHHHHHHHhcc-CcEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD-----G-LVTEVEHMGLAYQE-GLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVT  317 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E-----G-~Vt~VE~~g~Ae~A-GLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~  317 (342)
                      +.++++|.|...++|||.+...     | +|..|.++|+|+++ ||++||+|  |||++|..++|++++++|+.. ..|+
T Consensus         9 ~~~~v~l~~~~~~~lG~~l~~g~~~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~v~   88 (103)
T 2dc2_A            9 PIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIE   88 (103)
T ss_dssp             CEEEEEEECCSSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCCSEEE
T ss_pred             CcEEEEEEeCCCCccCEEEEeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEE
Confidence            4678889998889999999642     4 89999999999995 99999999  999999999999999999865 4899


Q ss_pred             EEEeCCCCCC
Q psy6995         318 VTVIPALSDG  327 (342)
Q Consensus       318 v~VipP~~dg  327 (342)
                      |++.++.++.
T Consensus        89 l~v~~~~~~~   98 (103)
T 2dc2_A           89 FEVVYVALEH   98 (103)
T ss_dssp             EEEEECC---
T ss_pred             EEEEecCCcc
Confidence            9999987765

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.30  E-value=1.5e-11  Score=93.65  Aligned_cols=79  Identities=25%  Similarity=0.361  Sum_probs=68.1

Q ss_pred             CCceEEEeecCCCCCCCeEEcCC----c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEE
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQPD----G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTV  318 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~E----G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v  318 (342)
                      ++++.++|.|.. .+|||.+...    | +|+.|.++++|++|||++||+|  |||++|.+++|++++.+|+.. ..+.+
T Consensus         2 ~~~r~v~l~r~~-~g~G~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~   80 (91)
T 1g9o_A            2 MLPRLCCLEKGP-NGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRL   80 (91)
T ss_dssp             CCCEEEEEECBT-TBCCEEEEECTTCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEE
T ss_pred             CccEEEEEEeCC-CcccEEEEecCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEE
Confidence            467889999987 4799999543    3 7999999999999999999999  999999999999999999965 47788


Q ss_pred             EEeCCCCC
Q psy6995         319 TVIPALSD  326 (342)
Q Consensus       319 ~VipP~~d  326 (342)
                      +++..+.+
T Consensus        81 ~~~~r~~~   88 (91)
T 1g9o_A           81 LVVDPETD   88 (91)
T ss_dssp             EEECCCCS
T ss_pred             EEEcCCcc
Confidence            88876543

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.29  E-value=1.4e-11  Score=97.65  Aligned_cols=80  Identities=24%  Similarity=0.370  Sum_probs=69.8

Q ss_pred             CCceEEEeecCCCCCCCeEEcC---------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQP---------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS  313 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~---------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts  313 (342)
                      .+.+++.|.|.. .+|||.+..         .| +|..|.++|+|++|| |++||+|  |||++|..++|++++++|+..
T Consensus        14 ~~~~~v~l~k~~-~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~   92 (108)
T 2d92_A           14 PEVKIVELVKDC-KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAV   92 (108)
T ss_dssp             SSCEEEEEEECS-SCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHS
T ss_pred             CceEEEEEEECC-CccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            467889998886 689999954         23 799999999999999 9999999  999999999999999999974


Q ss_pred             --CcEEEEEeCCCCCC
Q psy6995         314 --SLVTVTVIPALSDG  327 (342)
Q Consensus       314 --~~V~v~VipP~~dg  327 (342)
                        ..|+|+|..|...|
T Consensus        93 ~~~~v~l~v~R~~~~~  108 (108)
T 2d92_A           93 PPGLVHLGICSGPSSG  108 (108)
T ss_dssp             CSEEEEEEEECCCCCC
T ss_pred             CCCeEEEEEEcCCCCC
Confidence              37999999887654

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.29  E-value=7.4e-12  Score=97.45  Aligned_cols=84  Identities=27%  Similarity=0.397  Sum_probs=70.9

Q ss_pred             CceEEEeecCC-CCCCCeEEcCC-----c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccCcEEE
Q psy6995         248 PAQELTLKRNG-LGQLGFHVQPD-----G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTV  318 (342)
Q Consensus       248 et~El~LrR~~-~gqLGFhV~~E-----G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~~V~v  318 (342)
                      +.+++.|.|++ ...|||.+...     | +|+.|.++++|++|||++||+|  |||++|.+++|.+++.+++....|.|
T Consensus         8 ~~~~v~l~~~~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~v~l   87 (101)
T 1uez_A            8 EVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVL   87 (101)
T ss_dssp             CCEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSSSSSSCCE
T ss_pred             ccEEEEEEECCCCCcccEEEeCCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHhhcCCCeEEE
Confidence            67889999975 47999999643     4 7999999999999999999999  99999999999999999987778889


Q ss_pred             EEeCCCCCCCCCc
Q psy6995         319 TVIPALSDGTPRR  331 (342)
Q Consensus       319 ~VipP~~dg~PRR  331 (342)
                      +|....+--.|.+
T Consensus        88 ~v~R~g~~p~~s~  100 (101)
T 1uez_A           88 SVYSAGRISGPSS  100 (101)
T ss_dssp             EECCCCCCSSSSC
T ss_pred             EEEECCccCCCCC
Confidence            8876544434443

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.29  E-value=2.2e-11  Score=93.92  Aligned_cols=80  Identities=28%  Similarity=0.425  Sum_probs=70.3

Q ss_pred             CCCceEEEeecCCCCCCCeEEcCC-c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccCcEEEEEe
Q psy6995         246 GSPAQELTLKRNGLGQLGFHVQPD-G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTVTVI  321 (342)
Q Consensus       246 Gcet~El~LrR~~~gqLGFhV~~E-G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~~V~v~Vi  321 (342)
                      ....+.+.|.|+. ..|||.+..+ | +|..|.++++|++|||++||+|  |||++|.+++|.+++.+++....|+|+|.
T Consensus         6 ~~~~r~v~l~~~~-~~~G~~l~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~g~~v~l~v~   84 (93)
T 2dls_A            6 SGVQRCVIIQKDQ-HGFGFTVSGDRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSGAYVALTLL   84 (93)
T ss_dssp             CCCEEEEEEECSS-SSCCEEEECSSSCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHTSSSEEEEEEE
T ss_pred             CCCCEEEEEEeCC-CceeEEEeCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcCCCEEEEEEE
Confidence            3467888888876 6799999765 4 7999999999999999999999  99999999999999999998778999999


Q ss_pred             CCCCC
Q psy6995         322 PALSD  326 (342)
Q Consensus       322 pP~~d  326 (342)
                      .+.++
T Consensus        85 R~~~~   89 (93)
T 2dls_A           85 GSSSG   89 (93)
T ss_dssp             CCCCC
T ss_pred             ECCCC
Confidence            86544

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.29  E-value=1.7e-11  Score=94.28  Aligned_cols=77  Identities=17%  Similarity=0.379  Sum_probs=67.2

Q ss_pred             ceEEEeecCCCCCCCeEEcCC--c--eEEEEcccchhhh-hCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEE
Q psy6995         249 AQELTLKRNGLGQLGFHVQPD--G--LVTEVEHMGLAYQ-EGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTV  320 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~E--G--~Vt~VE~~g~Ae~-AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~V  320 (342)
                      .+.+.|.++....|||.+..+  |  +|.+|.++|+|++ |||++||+|  |||++|..++|++++++|+... .|.|++
T Consensus         2 ~r~V~l~K~~~~~lG~~i~~~~~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v   81 (88)
T 1kwa_A            2 SRLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKI   81 (88)
T ss_dssp             CEEEEEEECSSSCCCEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEEE
T ss_pred             eEEEEEEeCCCCceeEEEEeCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEEE
Confidence            467788888668899999863  3  8999999999999 899999999  9999999999999999998544 788888


Q ss_pred             eCCCC
Q psy6995         321 IPALS  325 (342)
Q Consensus       321 ipP~~  325 (342)
                      .++..
T Consensus        82 ~r~~~   86 (88)
T 1kwa_A           82 VPSYR   86 (88)
T ss_dssp             ECCCC
T ss_pred             ECCcC
Confidence            88753

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.28  E-value=2.4e-11  Score=95.49  Aligned_cols=76  Identities=26%  Similarity=0.402  Sum_probs=68.3

Q ss_pred             CCceEEEeecCCCCCCCeEEcCC-----c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccCcEEE
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQPD-----G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTV  318 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~E-----G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~~V~v  318 (342)
                      .++++++|.|+..+.|||.+...     | +|..|.++++|++|||++||+|  |||+.|.+++|++++++|+....|+|
T Consensus        14 ~~~~~v~l~k~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~v~l   93 (104)
T 1wi2_A           14 FLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTAREISM   93 (104)
T ss_dssp             SCCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHHSSSEEE
T ss_pred             CCCEEEEEEeCCCCCccEEEEcccCCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCEEEE
Confidence            35789999998878999999752     3 7999999999999999999999  99999999999999999998778888


Q ss_pred             EEeC
Q psy6995         319 TVIP  322 (342)
Q Consensus       319 ~Vip  322 (342)
                      +|..
T Consensus        94 ~v~r   97 (104)
T 1wi2_A           94 RVRF   97 (104)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            8864

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.28  E-value=1.7e-11  Score=96.28  Aligned_cols=85  Identities=27%  Similarity=0.396  Sum_probs=70.6

Q ss_pred             CCCceEEEeecCCCCCCCeEEcC-----------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHH
Q psy6995         246 GSPAQELTLKRNGLGQLGFHVQP-----------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLL  310 (342)
Q Consensus       246 Gcet~El~LrR~~~gqLGFhV~~-----------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlL  310 (342)
                      -++..+++|.|... .|||.+..           .| +|++|.++++|++|| |++||+|  |||++|..++|++++.+|
T Consensus         5 ~~~~~~v~l~~~~~-glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l   83 (105)
T 1wha_A            5 SSGRHVACLARSER-GLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLL   83 (105)
T ss_dssp             CCEEEEEEECCCTT-CCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHH
T ss_pred             CCeeEEEEEEeCCC-ccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            45677888988764 59999974           24 899999999999999 9999999  999999999999999999


Q ss_pred             hcc-CcEEEEEeCCCCCCCCCcC
Q psy6995         311 KTS-SLVTVTVIPALSDGTPRRY  332 (342)
Q Consensus       311 rts-~~V~v~VipP~~dg~PRRg  332 (342)
                      +.. ..|+|+|... .++.|..|
T Consensus        84 ~~~g~~v~l~v~R~-~~~~~~~g  105 (105)
T 1wha_A           84 TAASPTIALLLERE-AGSGPSSG  105 (105)
T ss_dssp             TSCCSCEEEEEEEC-CCCCCSCC
T ss_pred             HcCCCeEEEEEEEC-CCCCCCCC
Confidence            864 4788887765 46666543

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.27  E-value=7.1e-12  Score=102.37  Aligned_cols=80  Identities=23%  Similarity=0.335  Sum_probs=69.2

Q ss_pred             CCCceEEEeecCCCCCCCeEEcCC--------c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc
Q psy6995         246 GSPAQELTLKRNGLGQLGFHVQPD--------G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS  313 (342)
Q Consensus       246 Gcet~El~LrR~~~gqLGFhV~~E--------G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts  313 (342)
                      .+..+.+.|.+...+.|||.+...        | +|.+|.++|+|++|| |++||+|  |||++|..++|++++.+|+.+
T Consensus        22 ~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~  101 (118)
T 3b76_A           22 SMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRT  101 (118)
T ss_dssp             EEEEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSC
T ss_pred             CCCcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            345677888887678999999643        2 899999999999999 9999999  999999999999999999965


Q ss_pred             C-cEEEEEeCCCC
Q psy6995         314 S-LVTVTVIPALS  325 (342)
Q Consensus       314 ~-~V~v~VipP~~  325 (342)
                      . .|+|+|+++.+
T Consensus       102 ~~~v~L~v~R~~~  114 (118)
T 3b76_A          102 SSSIVLKALEVKE  114 (118)
T ss_dssp             CSEEEEEEEEEEE
T ss_pred             CCeEEEEEEECCC
Confidence            4 78999887654

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.26  E-value=2.9e-11  Score=96.39  Aligned_cols=81  Identities=21%  Similarity=0.336  Sum_probs=70.3

Q ss_pred             CCceEEEeecCCCCCCCeEEcC------Cc-------eEEEEcccchhhh-hCCCCCCEE--eecccccCCCHHHHHHHH
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQP------DG-------LVTEVEHMGLAYQ-EGLKQGCRL--ICKVAVSTLSHDQMVDLL  310 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~------EG-------~Vt~VE~~g~Ae~-AGLR~G~RL--Icg~sV~~lsHeq~vdlL  310 (342)
                      .++++++|.|++...|||.+..      .|       +|..|.++++|++ |||++||+|  |||++|.+++|++++++|
T Consensus         9 ~~~~~v~l~~~~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l   88 (114)
T 1uew_A            9 LQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLI   88 (114)
T ss_dssp             CCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHH
T ss_pred             ccceEEEEEECCCCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4678999999888899999953      12       8999999999999 999999999  999999999999999999


Q ss_pred             hcc-CcEEEEEeCCCCCC
Q psy6995         311 KTS-SLVTVTVIPALSDG  327 (342)
Q Consensus       311 rts-~~V~v~VipP~~dg  327 (342)
                      +.. ..|.|+|.+.....
T Consensus        89 ~~~g~~v~l~v~r~~~~~  106 (114)
T 1uew_A           89 KDAGLSVTLRIIPQEELN  106 (114)
T ss_dssp             HHTTTEEEEEECCCSCCC
T ss_pred             HcCCCeEEEEEEeCCcCC
Confidence            864 47889988765443

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.26  E-value=1.2e-11  Score=94.64  Aligned_cols=80  Identities=20%  Similarity=0.376  Sum_probs=67.2

Q ss_pred             CCceEEEeecCCCCCCCeEEcCC----c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEE
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQPD----G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTV  318 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~E----G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v  318 (342)
                      .+++.+.|.|.. .+|||.+...    | +|..|.++++|++|||++||+|  |||++|.+.+|++++++|+.. ..+.+
T Consensus         4 ~~~r~v~l~~~~-~~~G~~l~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~   82 (95)
T 3r68_A            4 HQPRVVVIKKGS-NGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTL   82 (95)
T ss_dssp             CCCEEEEEECBT-TBCSCEEEEC--CCSEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEE
T ss_pred             CCcEEEEEecCC-CcccEEEEecCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence            357888898865 6899999644    3 6999999999999999999999  999999999999999999964 47888


Q ss_pred             EEeCCCCCC
Q psy6995         319 TVIPALSDG  327 (342)
Q Consensus       319 ~VipP~~dg  327 (342)
                      +++.++.+.
T Consensus        83 ~~~r~~~~~   91 (95)
T 3r68_A           83 LVLDKELER   91 (95)
T ss_dssp             EEEECC---
T ss_pred             EEECCcccc
Confidence            888776543

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.25  E-value=2.4e-11  Score=93.48  Aligned_cols=78  Identities=21%  Similarity=0.330  Sum_probs=63.0

Q ss_pred             EEEeecC-CCCCCCeEEcCCceEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEEeCCCC
Q psy6995         251 ELTLKRN-GLGQLGFHVQPDGLVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTVIPALS  325 (342)
Q Consensus       251 El~LrR~-~~gqLGFhV~~EG~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~VipP~~  325 (342)
                      .++|.+. ...+|||.+..-=+|.+|.++|+|++|| |++||+|  |||+++..++|++++++|+.+. .|+|++.|+.+
T Consensus         3 ~v~l~~~~~~~~~G~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L~v~~~~~   82 (88)
T 3e17_A            3 GVLLMKSRANEEYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDLE   82 (88)
T ss_dssp             EEEEECBTTBCCCCEEEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEECCC--
T ss_pred             EEEEEeCCCCCCCCEEEeCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEeCCCc
Confidence            3555553 4479999997534899999999999999 9999999  9999999999999999999544 89999998876


Q ss_pred             CCC
Q psy6995         326 DGT  328 (342)
Q Consensus       326 dg~  328 (342)
                      +-.
T Consensus        83 ~~~   85 (88)
T 3e17_A           83 HHH   85 (88)
T ss_dssp             ---
T ss_pred             ccc
Confidence            543

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.25  E-value=2.1e-11  Score=92.07  Aligned_cols=74  Identities=20%  Similarity=0.339  Sum_probs=64.0

Q ss_pred             CceEEEeecCCCCCCCeEEcCC-----c-eEEEEcccchhhh-hCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD-----G-LVTEVEHMGLAYQ-EGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVT  317 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E-----G-~Vt~VE~~g~Ae~-AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~  317 (342)
                      ++++++|.|+...+|||.+...     | +|..|.++|+|++ |||++||+|  |||++|..++|++++.+|+... .++
T Consensus         2 ~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   81 (87)
T 4e34_A            2 PIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIE   81 (87)
T ss_dssp             CCEEEEEECCTTBCCCEEEEEEGGGTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHCCSEEE
T ss_pred             CEEEEEEEECCCCcccEEEEccCCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            4688999998878999999632     2 8999999999999 799999999  9999999999999999998654 566


Q ss_pred             EEEe
Q psy6995         318 VTVI  321 (342)
Q Consensus       318 v~Vi  321 (342)
                      |+|.
T Consensus        82 l~v~   85 (87)
T 4e34_A           82 FEVV   85 (87)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6653

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.25  E-value=3e-11  Score=92.99  Aligned_cols=78  Identities=27%  Similarity=0.421  Sum_probs=68.3

Q ss_pred             CceEEEeecCCCCCCCeEEcCC-------c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-CcE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD-------G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLV  316 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E-------G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V  316 (342)
                      .++.++|.|.. .+|||.+..+       | +|+.|.++++|++|||++||+|  |||++|.+++|++++++|+.. ..|
T Consensus         3 ~~r~v~l~k~~-~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v   81 (96)
T 2v90_A            3 KPRCLHLEKGP-QGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCV   81 (96)
T ss_dssp             CCEEEEEECBT-TBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEE
T ss_pred             CCEEEEEEeCC-CcccEEEEeccCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEE
Confidence            57889999976 4899999763       3 8999999999999999999999  999999999999999999864 479


Q ss_pred             EEEEeCCCCC
Q psy6995         317 TVTVIPALSD  326 (342)
Q Consensus       317 ~v~VipP~~d  326 (342)
                      .|+|..+.+.
T Consensus        82 ~l~v~r~~~~   91 (96)
T 2v90_A           82 SLTVVDPEAD   91 (96)
T ss_dssp             EEEEECCCTT
T ss_pred             EEEEECCCCc
Confidence            9999876544

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=4.2e-11  Score=91.24  Aligned_cols=76  Identities=28%  Similarity=0.429  Sum_probs=65.7

Q ss_pred             CCceEEEeecCCCCCCCeEEcC-----Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-CcE
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQP-----DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLV  316 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~-----EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V  316 (342)
                      ..++.++|.|.. .+|||.+..     .| +|+.|.++++|++|| |++||+|  |||++|..++|++++.+|+.. ..|
T Consensus         4 ~~~r~v~l~k~~-~glG~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v   82 (93)
T 2dkr_A            4 GSSGVVELPKTD-EGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSV   82 (93)
T ss_dssp             SCSCEEEEECCT-TCCCEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCSEE
T ss_pred             CCCEEEEEEeCC-CCccEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcE
Confidence            467889999876 899999963     23 899999999999996 9999999  999999999999999999854 468


Q ss_pred             EEEEeCC
Q psy6995         317 TVTVIPA  323 (342)
Q Consensus       317 ~v~VipP  323 (342)
                      +|+|...
T Consensus        83 ~l~v~r~   89 (93)
T 2dkr_A           83 KLVVRSG   89 (93)
T ss_dssp             EEEECCC
T ss_pred             EEEEEeC
Confidence            8888754

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.24  E-value=3.1e-11  Score=92.57  Aligned_cols=79  Identities=19%  Similarity=0.243  Sum_probs=65.8

Q ss_pred             CceEEEeecCCCCCCCeEEcCCc--eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEEEEeC
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPDG--LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTVIP  322 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~EG--~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v~Vip  322 (342)
                      ..+.++|.|.. .+|||.+..+.  +|.+|.++++|++|||++||+|  |||++|.+++|++++.+|+.. ..|.|+|..
T Consensus         3 ~~r~v~l~~~~-~g~G~~l~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R   81 (91)
T 2f5y_A            3 RYRQITIPRGK-DGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWR   81 (91)
T ss_dssp             EEEEEEEECBT-TBTSEEEECSSSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEE
T ss_pred             ceEEEEEEeCC-CCccEEEecCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEe
Confidence            35678888865 57999997553  8999999999999999999999  999999999999999999863 478888887


Q ss_pred             CCCCC
Q psy6995         323 ALSDG  327 (342)
Q Consensus       323 P~~dg  327 (342)
                      +.+.-
T Consensus        82 ~~~~~   86 (91)
T 2f5y_A           82 MVPQV   86 (91)
T ss_dssp             CC---
T ss_pred             CCCCC
Confidence            65443

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.24  E-value=3.8e-11  Score=94.54  Aligned_cols=77  Identities=31%  Similarity=0.503  Sum_probs=66.7

Q ss_pred             CCCceEEEeecCCCCCCCeEEcC-------------Cc-eEEEEcccchhhhh-CCCCCCEE--eecccccCCCHHHHHH
Q psy6995         246 GSPAQELTLKRNGLGQLGFHVQP-------------DG-LVTEVEHMGLAYQE-GLKQGCRL--ICKVAVSTLSHDQMVD  308 (342)
Q Consensus       246 Gcet~El~LrR~~~gqLGFhV~~-------------EG-~Vt~VE~~g~Ae~A-GLR~G~RL--Icg~sV~~lsHeq~vd  308 (342)
                      .+++++++|.|. .+.|||.+..             .| +|+.|.++++|++| ||++||+|  |||++|..++|++++.
T Consensus         6 ~~~~~~v~l~k~-~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~   84 (107)
T 1uhp_A            6 SGKSLTLVLHRD-SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVE   84 (107)
T ss_dssp             SSEEEEEEECCS-SSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHH
T ss_pred             CcEEEEEEEEeC-CCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            356788889997 5899999953             24 89999999999999 99999999  9999999999999999


Q ss_pred             HHhcc-CcEEEEEeCC
Q psy6995         309 LLKTS-SLVTVTVIPA  323 (342)
Q Consensus       309 lLrts-~~V~v~VipP  323 (342)
                      +|+.. ..|.|+|+..
T Consensus        85 ~~~~~~~~v~l~v~R~  100 (107)
T 1uhp_A           85 AFKTAKEPIVVQVLRR  100 (107)
T ss_dssp             HHHHCCSSEEEEEEEC
T ss_pred             HHHcCCCcEEEEEEeC
Confidence            99854 4788888754

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.23  E-value=4.4e-11  Score=96.41  Aligned_cols=86  Identities=14%  Similarity=0.220  Sum_probs=73.4

Q ss_pred             hccCCCCCceEEEeecCCCCCCCeEEcCC-----c--eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHH
Q psy6995         241 RAATPGSPAQELTLKRNGLGQLGFHVQPD-----G--LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLL  310 (342)
Q Consensus       241 ~~VT~Gcet~El~LrR~~~gqLGFhV~~E-----G--~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlL  310 (342)
                      +.+...-.++++.|.++....|||.+...     +  +|++|.++++|++|| |++||+|  |||++|..++|++++++|
T Consensus         8 ~~~~~~~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l   87 (117)
T 1v62_A            8 DTVANASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLL   87 (117)
T ss_dssp             CSSCCSSSSEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHH
T ss_pred             ccccCCCCcEEEEEEcCCCCcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            34555667899999998778999999653     4  899999999999999 9999999  999999999999999999


Q ss_pred             hcc-CcEEEEEeCCCCC
Q psy6995         311 KTS-SLVTVTVIPALSD  326 (342)
Q Consensus       311 rts-~~V~v~VipP~~d  326 (342)
                      +.. ..|+|+|.+....
T Consensus        88 ~~~g~~v~l~v~r~~~~  104 (117)
T 1v62_A           88 ASISEKVRLEILPVPQS  104 (117)
T ss_dssp             HSCSSEEEEEECCBTTB
T ss_pred             HhCCCeEEEEEEECCCC
Confidence            853 4789998876543

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=4.5e-11  Score=93.07  Aligned_cols=76  Identities=24%  Similarity=0.379  Sum_probs=68.3

Q ss_pred             CceEEEeecCCCCCCCeEEcCC-----c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccCcEEEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD-----G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTVT  319 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E-----G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~~V~v~  319 (342)
                      ..++++|.|...+.|||.+...     | +|.+|.++++|++|||++||+|  |||++|.+++|++++.+|+....|.|+
T Consensus        10 ~~~~v~l~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~v~l~   89 (100)
T 2eeh_A           10 IIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTSSSRLHMM   89 (100)
T ss_dssp             EECCEEECCCSSSSCSEEEECCTTTTCCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHSCSSEEEE
T ss_pred             eEEEEEEEECCCCCccEEEEccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcCCCEEEEE
Confidence            4677889998888999999754     4 7999999999999999999999  999999999999999999987789999


Q ss_pred             EeCC
Q psy6995         320 VIPA  323 (342)
Q Consensus       320 VipP  323 (342)
                      |...
T Consensus        90 v~R~   93 (100)
T 2eeh_A           90 VRRM   93 (100)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8763

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.22  E-value=8.6e-11  Score=90.80  Aligned_cols=80  Identities=23%  Similarity=0.361  Sum_probs=66.9

Q ss_pred             CCCCceEEEeecCCCCCCCeEEcCC-----c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-C
Q psy6995         245 PGSPAQELTLKRNGLGQLGFHVQPD-----G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-S  314 (342)
Q Consensus       245 ~Gcet~El~LrR~~~gqLGFhV~~E-----G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-~  314 (342)
                      .|.+...+.|.|. .+.|||.+...     | +|..|.++++|++|| |++||+|  |||++|...+|++++++|+.. .
T Consensus         2 ~~~~~~~v~l~~~-~~~lG~~i~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~   80 (97)
T 1n7e_A            2 SGAIIYTVELKRY-GGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGE   80 (97)
T ss_dssp             -CCCEEEEEEECT-TSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCS
T ss_pred             CCceEEEEEEEeC-CCCcCEEEEcccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            4666788888776 36799999653     3 799999999999999 9999999  999999999999999999843 4


Q ss_pred             cEEEEEeCCCC
Q psy6995         315 LVTVTVIPALS  325 (342)
Q Consensus       315 ~V~v~VipP~~  325 (342)
                      .|.|+|....+
T Consensus        81 ~v~l~v~R~~~   91 (97)
T 1n7e_A           81 TVTLKIKKQTD   91 (97)
T ss_dssp             EEEEEEECCCC
T ss_pred             eEEEEEEeCCC
Confidence            78888876543

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=99.22  E-value=3.1e-11  Score=98.07  Aligned_cols=78  Identities=21%  Similarity=0.312  Sum_probs=67.4

Q ss_pred             CceEEEeecCCCCCCCeEEcCC-c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC--cEEEEEe
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD-G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS--LVTVTVI  321 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E-G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~--~V~v~Vi  321 (342)
                      .++.+.|.|. .+++||.+... + +|..|.++++|++|||++||+|  |||++|...+|++++++|+...  .|.|+|+
T Consensus        23 ~~r~v~l~k~-~~~~G~~l~~~~~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~V~  101 (109)
T 2vsv_A           23 MPRSIRFTAE-EGDLGFTLRGNAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVV  101 (109)
T ss_dssp             SCEEEEECCG-GGCCCEEEESSSSCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEE
T ss_pred             CCEEEEEEeC-CCceeEEEeCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEE
Confidence            5788999994 58999999754 3 5999999999999999999999  9999999999999999998544  3999999


Q ss_pred             CCCCC
Q psy6995         322 PALSD  326 (342)
Q Consensus       322 pP~~d  326 (342)
                      +|.+.
T Consensus       102 ~~~~~  106 (109)
T 2vsv_A          102 SLLDE  106 (109)
T ss_dssp             SCC--
T ss_pred             ECCCc
Confidence            88653

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.22  E-value=2.9e-11  Score=96.19  Aligned_cols=78  Identities=19%  Similarity=0.305  Sum_probs=68.0

Q ss_pred             CceEEEeecCCCCCCCeEEcC-------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc---
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP-------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS---  313 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~-------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts---  313 (342)
                      +++++.|.|.....|||.+..       .| +|.+|.++|+|++|| |++||+|  |||++|..++|++++++|+..   
T Consensus         5 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~   84 (108)
T 3cbz_A            5 NIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHK   84 (108)
T ss_dssp             CEEEEEECHHHHCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTS
T ss_pred             eEEEEEEEeCCCCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccC
Confidence            577888988766889999964       23 899999999999999 9999999  999999999999999999865   


Q ss_pred             -CcEEEEEeCCCC
Q psy6995         314 -SLVTVTVIPALS  325 (342)
Q Consensus       314 -~~V~v~VipP~~  325 (342)
                       ..|+|+|..+.+
T Consensus        85 ~~~v~l~v~R~~~   97 (108)
T 3cbz_A           85 PGPIVLTVAKSGG   97 (108)
T ss_dssp             SSCEEEEEECCCC
T ss_pred             CCeEEEEEEeCCC
Confidence             369999988643

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.22  E-value=5.5e-11  Score=94.97  Aligned_cols=78  Identities=23%  Similarity=0.320  Sum_probs=68.0

Q ss_pred             CceEEEeecCCCCCCCeEEcC--------------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHH
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP--------------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDL  309 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~--------------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdl  309 (342)
                      +++.+.|.|.....|||.+..              .| +|..|.++++|++|| |++||+|  |||++|.+++|++++.+
T Consensus        15 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~   94 (117)
T 2ehr_A           15 PPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEA   94 (117)
T ss_dssp             CCEEEEECCCSSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHH
T ss_pred             CCEEEEEEeCCCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            578899999877899999942              24 799999999999999 9999999  99999999999999999


Q ss_pred             Hhcc-CcEEEEEeCCCC
Q psy6995         310 LKTS-SLVTVTVIPALS  325 (342)
Q Consensus       310 Lrts-~~V~v~VipP~~  325 (342)
                      |+.. ..|+|+|.....
T Consensus        95 ~~~~g~~v~l~v~r~~~  111 (117)
T 2ehr_A           95 IKNAGNPVVFIVQSLSS  111 (117)
T ss_dssp             HHTSCSSEEEEECCBSC
T ss_pred             HHcCCCeEEEEEEECCC
Confidence            9965 478888876544

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.22  E-value=3.4e-11  Score=98.02  Aligned_cols=81  Identities=23%  Similarity=0.403  Sum_probs=64.6

Q ss_pred             CCCCCceEEEeecCCCCCCCeEEcCC--------c-eEEEEcccchhhhh-CCCCCCEE--eecccccCCCHHHHHHHHh
Q psy6995         244 TPGSPAQELTLKRNGLGQLGFHVQPD--------G-LVTEVEHMGLAYQE-GLKQGCRL--ICKVAVSTLSHDQMVDLLK  311 (342)
Q Consensus       244 T~Gcet~El~LrR~~~gqLGFhV~~E--------G-~Vt~VE~~g~Ae~A-GLR~G~RL--Icg~sV~~lsHeq~vdlLr  311 (342)
                      +.-.+.+++.|.|...+.|||.+...        | +|..|.++|+|++| |||+||+|  |||++|..++|++++.+|+
T Consensus        20 s~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~   99 (120)
T 2iwo_A           20 FQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLK   99 (120)
T ss_dssp             -----CEEEEEEC----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHH
T ss_pred             CCCCCcEEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            34456889999998778999999642        3 79999999999999 99999999  9999999999999999999


Q ss_pred             ccC-cEEEEEeCCC
Q psy6995         312 TSS-LVTVTVIPAL  324 (342)
Q Consensus       312 ts~-~V~v~VipP~  324 (342)
                      .+. .|+|+|++..
T Consensus       100 ~~~~~v~l~v~r~g  113 (120)
T 2iwo_A          100 NASGSIEMQVVAGG  113 (120)
T ss_dssp             HCCSEEEEEEECCT
T ss_pred             cCCCeEEEEEEECC
Confidence            655 7999998754

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=3.3e-11  Score=93.22  Aligned_cols=79  Identities=18%  Similarity=0.354  Sum_probs=67.5

Q ss_pred             CceEEEeecCCCCCCCeEEcCC--c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEEEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD--G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTV  320 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E--G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v~V  320 (342)
                      ..+.+.|.|...+.|||.++.+  | +|++|.++++|++|| |++||+|  |||++| ..+|++++++|+.. ..|.|+|
T Consensus         6 ~~r~v~l~k~~~~~lG~~i~~~~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~v~l~v   84 (91)
T 2e7k_A            6 SGRMVGIRKTAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSVILKI   84 (91)
T ss_dssp             CSCBCCBCCCTTCCCCEEEEESSSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSSBCEEE
T ss_pred             CcEEEEEEECCCCcEeEEEEecCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCeEEEEE
Confidence            3566778887778999999765  3 799999999999987 9999999  999999 99999999999853 4789999


Q ss_pred             eCCCCCC
Q psy6995         321 IPALSDG  327 (342)
Q Consensus       321 ipP~~dg  327 (342)
                      ++....|
T Consensus        85 ~~~~~~~   91 (91)
T 2e7k_A           85 LSGPSSG   91 (91)
T ss_dssp             ECCSCCC
T ss_pred             EECCcCC
Confidence            9876544

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.22  E-value=5.1e-11  Score=90.72  Aligned_cols=75  Identities=23%  Similarity=0.298  Sum_probs=66.2

Q ss_pred             CCceEEEeecCCCCCCCeEEcCC-----c-eEEEEcccchhhhh-CCCCCCEE--eecccccCCCHHHHHHHHhcc-CcE
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQPD-----G-LVTEVEHMGLAYQE-GLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLV  316 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~E-----G-~Vt~VE~~g~Ae~A-GLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V  316 (342)
                      ++++.++|.|...+.|||.+...     | +|.+|.++|+|++| ||++||+|  |||++|.+++|++++.+++.. ..|
T Consensus         3 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~v   82 (90)
T 1qav_A            3 LQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEV   82 (90)
T ss_dssp             SSCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred             CccEEEEEEeCCCCCcCEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            46889999998889999999642     4 89999999999999 99999999  999999999999999999864 467


Q ss_pred             EEEEe
Q psy6995         317 TVTVI  321 (342)
Q Consensus       317 ~v~Vi  321 (342)
                      +|+|.
T Consensus        83 ~l~v~   87 (90)
T 1qav_A           83 VLEVK   87 (90)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77764

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.22  E-value=4.8e-11  Score=90.33  Aligned_cols=73  Identities=22%  Similarity=0.293  Sum_probs=62.7

Q ss_pred             EEEeecCCCCCCCeEEcCC-----c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEEEEe
Q psy6995         251 ELTLKRNGLGQLGFHVQPD-----G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTVI  321 (342)
Q Consensus       251 El~LrR~~~gqLGFhV~~E-----G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v~Vi  321 (342)
                      .+++.+.+.+.|||.+...     | +|.+|.++++|++|||++||+|  |||+++.+++|+++.++|+.. ..|.|+|.
T Consensus         3 ~~~v~~~~~~~lG~~l~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~   82 (87)
T 2pa1_A            3 ALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLD   82 (87)
T ss_dssp             EEEEEECSSSCCSEEEEEEGGGTEEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEEEEEE
T ss_pred             EEEEEECCCCccCEEEecccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence            3556667778999999632     3 8999999999999999999999  999999999999999999865 47888886


Q ss_pred             CC
Q psy6995         322 PA  323 (342)
Q Consensus       322 pP  323 (342)
                      ..
T Consensus        83 R~   84 (87)
T 2pa1_A           83 RI   84 (87)
T ss_dssp             EC
T ss_pred             ec
Confidence            53

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.21  E-value=2.2e-11  Score=91.46  Aligned_cols=75  Identities=17%  Similarity=0.329  Sum_probs=65.3

Q ss_pred             CceEEEeecCCCCCCCeEEcCC-c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEEEEeC
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD-G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTVIP  322 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E-G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v~Vip  322 (342)
                      .++++.|.|.. .+|||.+..+ | +|.+|.++++|++|||++||+|  |||++|.+.+|++++++|+.. ..|.|+|..
T Consensus         2 ~~r~v~l~~~~-~g~G~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R   80 (83)
T 2kv8_A            2 RVRSVEVARGR-AGYGFTLSGQAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAE   80 (83)
T ss_dssp             CEEEEEECCCS-SCCSCBCCCSSSCBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTTCSSCEEEEEEC
T ss_pred             CcEEEEEEeCC-CcccEEEEcCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEc
Confidence            36788999977 6799999655 3 8999999999999999999999  999999999999999999854 468888875


Q ss_pred             C
Q psy6995         323 A  323 (342)
Q Consensus       323 P  323 (342)
                      .
T Consensus        81 ~   81 (83)
T 2kv8_A           81 G   81 (83)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.21  E-value=7.4e-11  Score=95.77  Aligned_cols=93  Identities=22%  Similarity=0.410  Sum_probs=76.7

Q ss_pred             ChhhHHHHHHhhhccCCCCCceEEEeecCCCCCCCeEEcC---C-----c-eEEEEcccchhhhhC-CCCCCEE--eecc
Q psy6995         229 DRDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQP---D-----G-LVTEVEHMGLAYQEG-LKQGCRL--ICKV  296 (342)
Q Consensus       229 ~~edl~EIV~RL~~VT~Gcet~El~LrR~~~gqLGFhV~~---E-----G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~  296 (342)
                      +.+|+.+++..+   .++.+.+++.|.|...+.|||.+..   .     | +|.+|.++|+|++|| |++||+|  |||+
T Consensus         9 ~~~~~~~~~~~~---~~~~~~~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~   85 (128)
T 2db5_A            9 GNEDFNSVIQQM---AQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHT   85 (128)
T ss_dssp             CSSCHHHHHHHH---HTTCEEEEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSC
T ss_pred             CcHhHHHHHHhh---cccCceEEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCE
Confidence            346666655444   4578899999999877899999942   1     4 799999999999999 9999999  9999


Q ss_pred             ccc-CCCHHHHHHHHhcc-CcEEEEEeCCC
Q psy6995         297 AVS-TLSHDQMVDLLKTS-SLVTVTVIPAL  324 (342)
Q Consensus       297 sV~-~lsHeq~vdlLrts-~~V~v~VipP~  324 (342)
                      +|. .++|++++.+|+.. ..|.|+|....
T Consensus        86 ~v~~~~~~~~~~~~l~~~~~~v~l~v~r~~  115 (128)
T 2db5_A           86 PLDQNISHQQAIALLQQTTGSLRLIVAREP  115 (128)
T ss_dssp             BCSTTSCHHHHHHHHHHCCSEEEEEEEECC
T ss_pred             ECCCCCCHHHHHHHHHcCCCeEEEEEEcCC
Confidence            998 99999999999864 47888887653

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.21  E-value=5e-11  Score=91.81  Aligned_cols=77  Identities=21%  Similarity=0.345  Sum_probs=66.5

Q ss_pred             CCCceEEEeecCCCCCCCeEEcC-----------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHH
Q psy6995         246 GSPAQELTLKRNGLGQLGFHVQP-----------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLL  310 (342)
Q Consensus       246 Gcet~El~LrR~~~gqLGFhV~~-----------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlL  310 (342)
                      |-..++++|.|.+..+|||.+..           .| +|.+|.++++|++|| |++||+|  |||++|.+.+|++++.+|
T Consensus         3 ge~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l   82 (98)
T 1ihj_A            3 GELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLI   82 (98)
T ss_dssp             CCEEEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CceEEEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            44467899999877899999942           24 699999999999999 9999999  999999999999999999


Q ss_pred             hccC-cEEEEEeC
Q psy6995         311 KTSS-LVTVTVIP  322 (342)
Q Consensus       311 rts~-~V~v~Vip  322 (342)
                      +... .|+|+|..
T Consensus        83 ~~~g~~v~l~v~R   95 (98)
T 1ihj_A           83 KEADFKIELEIQT   95 (98)
T ss_dssp             HHSCSEEEEEEEE
T ss_pred             hcCCCeEEEEEEe
Confidence            8644 68888765

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.20  E-value=6.4e-11  Score=94.40  Aligned_cols=80  Identities=21%  Similarity=0.378  Sum_probs=67.0

Q ss_pred             CCCCceEEEeecCCCCCCCeEEcC---Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-cE
Q psy6995         245 PGSPAQELTLKRNGLGQLGFHVQP---DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LV  316 (342)
Q Consensus       245 ~Gcet~El~LrR~~~gqLGFhV~~---EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V  316 (342)
                      .|.-.+.+.|.+.....|||.+..   .| +|+.|.++|+|++|| |++||+|  |||++|..+++++++++|+... .|
T Consensus         9 ~~~~~~~v~l~K~~~~~lG~~l~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v   88 (97)
T 2ejy_A            9 SGHMVRLIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMI   88 (97)
T ss_dssp             ----CEEEEEEECSSSCCSEEEEECTTCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEEE
T ss_pred             CCCccEEEEEEeCCCCCeeEEEEeCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            355678889988766899999974   24 789999999999999 9999999  9999999999999999998544 78


Q ss_pred             EEEEeCCC
Q psy6995         317 TVTVIPAL  324 (342)
Q Consensus       317 ~v~VipP~  324 (342)
                      .|+|+|..
T Consensus        89 ~L~V~~~~   96 (97)
T 2ejy_A           89 SLKVIPNQ   96 (97)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEECC
Confidence            89988763

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.20  E-value=9.9e-11  Score=89.31  Aligned_cols=76  Identities=26%  Similarity=0.431  Sum_probs=65.2

Q ss_pred             CCceEEEeecCCCCCCCeEEcC----------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhc
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQP----------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKT  312 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~----------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrt  312 (342)
                      ++.++++|.|.. .+|||.+..          .| +|.+|.++++|++|| |++||+|  |||++|..++|++++.+|+.
T Consensus         2 ~~~~~v~l~k~~-~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~   80 (94)
T 2fe5_A            2 MTIMEVNLLKGP-KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKN   80 (94)
T ss_dssp             CCEEEEEEECCT-TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHT
T ss_pred             cEEEEEEEEECC-CCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            356889998875 679999962          13 899999999999999 9999999  99999999999999999985


Q ss_pred             cC-cEEEEEeCC
Q psy6995         313 SS-LVTVTVIPA  323 (342)
Q Consensus       313 s~-~V~v~VipP  323 (342)
                      .. .|.|+|..+
T Consensus        81 ~~~~v~l~v~R~   92 (94)
T 2fe5_A           81 TSDMVYLKVAKP   92 (94)
T ss_dssp             CCSEEEEEEECC
T ss_pred             CCCeEEEEEEcC
Confidence            44 788888654

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.20  E-value=5.8e-11  Score=91.86  Aligned_cols=72  Identities=24%  Similarity=0.291  Sum_probs=61.4

Q ss_pred             EEeecCCCCCCCeEEcCCc-------------eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-Cc
Q psy6995         252 LTLKRNGLGQLGFHVQPDG-------------LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SL  315 (342)
Q Consensus       252 l~LrR~~~gqLGFhV~~EG-------------~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~  315 (342)
                      ++|.|. ...|||.++...             +|+.|.++++|++|||++||+|  |||++|..++|++++.+|+.. ..
T Consensus         6 v~l~~~-~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~   84 (99)
T 3khf_A            6 IVIHSS-GKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNK   84 (99)
T ss_dssp             EEEEC--CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSE
T ss_pred             EEEEeC-CCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCE
Confidence            556664 479999997542             6999999999999999999999  999999999999999999854 47


Q ss_pred             EEEEEeCCC
Q psy6995         316 VTVTVIPAL  324 (342)
Q Consensus       316 V~v~VipP~  324 (342)
                      |.|++.+..
T Consensus        85 v~l~v~r~~   93 (99)
T 3khf_A           85 ISLRTTALE   93 (99)
T ss_dssp             EEEEEECSC
T ss_pred             EEEEEEECC
Confidence            888888754

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.19  E-value=6.4e-11  Score=91.90  Aligned_cols=75  Identities=27%  Similarity=0.499  Sum_probs=65.3

Q ss_pred             CCceEEEeecCCCCCCCeEEcC----------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhc
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQP----------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKT  312 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~----------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrt  312 (342)
                      -+.++++|.|.. +.|||.+..          .| +|.+|.++++|++|| |++||+|  |||++|.+++|++++.+|+.
T Consensus         6 ~~~~~v~l~~~~-~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~   84 (101)
T 2jik_A            6 VTEEEINLTRGP-SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN   84 (101)
T ss_dssp             EEEEEEEEECCT-TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHT
T ss_pred             CccEEEEEEeCC-CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            356888999976 899999964          24 799999999999999 9999999  99999999999999999985


Q ss_pred             cC-cEEEEEeC
Q psy6995         313 SS-LVTVTVIP  322 (342)
Q Consensus       313 s~-~V~v~Vip  322 (342)
                      .. .|.|+|..
T Consensus        85 ~g~~v~l~v~R   95 (101)
T 2jik_A           85 AGYAVSLRVQH   95 (101)
T ss_dssp             CCSEEEEEEEE
T ss_pred             CCCeEEEEEEe
Confidence            44 68888854

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=99.19  E-value=3.9e-11  Score=94.01  Aligned_cols=73  Identities=26%  Similarity=0.393  Sum_probs=63.6

Q ss_pred             CceEEEeecCCCCCCCeEEcC------------Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP------------DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT  312 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~------------EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt  312 (342)
                      .++++.|.|...+.|||.++.            .| +|..|.++++|++|||++||+|  |||++|..++|++++++|+.
T Consensus        15 ~~~~v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~   94 (104)
T 2z17_A           15 QRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRS   94 (104)
T ss_dssp             CCCEEEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh
Confidence            467788999877899999985            13 8999999999999999999999  99999999999999999986


Q ss_pred             cC-cEEEEE
Q psy6995         313 SS-LVTVTV  320 (342)
Q Consensus       313 s~-~V~v~V  320 (342)
                      .. .|+|+|
T Consensus        95 ~~~~v~l~v  103 (104)
T 2z17_A           95 SGNLLTIET  103 (104)
T ss_dssp             TTTEEEEEC
T ss_pred             CCCcEEEEE
Confidence            55 566655

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=5.7e-11  Score=92.92  Aligned_cols=82  Identities=23%  Similarity=0.364  Sum_probs=70.1

Q ss_pred             CCCceEEEeecCCCCCCCeEEcC---C-c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-CcEE
Q psy6995         246 GSPAQELTLKRNGLGQLGFHVQP---D-G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVT  317 (342)
Q Consensus       246 Gcet~El~LrR~~~gqLGFhV~~---E-G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~  317 (342)
                      ...++.+.|.|. .+.|||.+..   + | +|.+|.++++|++|||++||+|  |||++|..++|++++.+++.. ..+.
T Consensus         6 ~~~~r~v~l~k~-~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   84 (106)
T 2eei_A            6 SGQPRLCYLVKE-GGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVM   84 (106)
T ss_dssp             CSSSEEEEEECC-SSSCSCCEECCSSCCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHHCSEEE
T ss_pred             CCCCEEEEEEEC-CCCCCEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            346788999995 5799999942   2 3 8999999999999999999999  999999999999999999854 5789


Q ss_pred             EEEeCCCCCCC
Q psy6995         318 VTVIPALSDGT  328 (342)
Q Consensus       318 v~VipP~~dg~  328 (342)
                      ++++.+..+..
T Consensus        85 l~v~r~~~~~~   95 (106)
T 2eei_A           85 FLLVDKETDKR   95 (106)
T ss_dssp             EEECCTTTSCC
T ss_pred             EEEEcCchhhH
Confidence            99998876653

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.19  E-value=7.8e-11  Score=94.33  Aligned_cols=79  Identities=24%  Similarity=0.298  Sum_probs=69.4

Q ss_pred             CCCceEEEeecCCCCCCCeEEcCC-----c-eEEEEcccchhhhh--CCCCCCEE--eecccccCCCHHHHHHHHhcc--
Q psy6995         246 GSPAQELTLKRNGLGQLGFHVQPD-----G-LVTEVEHMGLAYQE--GLKQGCRL--ICKVAVSTLSHDQMVDLLKTS--  313 (342)
Q Consensus       246 Gcet~El~LrR~~~gqLGFhV~~E-----G-~Vt~VE~~g~Ae~A--GLR~G~RL--Icg~sV~~lsHeq~vdlLrts--  313 (342)
                      .-+.+.++|.|...+.|||.+...     | +|++|.++|+|++|  ||++||+|  |||++|..++|++++++|+..  
T Consensus        13 ~~~~~~v~l~k~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~   92 (119)
T 2cs5_A           13 HDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCE   92 (119)
T ss_dssp             SSCCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEEeCCCCCcCEEEecccCCCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhccc
Confidence            346788999998888999999643     3 89999999999999  99999999  999999999999999999865  


Q ss_pred             ---CcEEEEEeCCC
Q psy6995         314 ---SLVTVTVIPAL  324 (342)
Q Consensus       314 ---~~V~v~VipP~  324 (342)
                         ..|.|+|.+..
T Consensus        93 ~~~~~v~l~v~R~~  106 (119)
T 2cs5_A           93 RHSGELMLLVRPNA  106 (119)
T ss_dssp             CCSSCEEEEEECCC
T ss_pred             cCCCEEEEEEEccc
Confidence               47899887654

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.19  E-value=8.8e-11  Score=92.14  Aligned_cols=77  Identities=29%  Similarity=0.452  Sum_probs=66.3

Q ss_pred             CceEEEeecCCCCCCCeEEcC----------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP----------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS  313 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~----------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts  313 (342)
                      .+++++|.|.. ++|||.+.+          .| +|.+|.++|+|++|| |++||+|  |||++|..++|++++.+++..
T Consensus         3 ~~~~v~l~k~~-~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   81 (105)
T 2awx_A            3 KIMEIKLIKGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNT   81 (105)
T ss_dssp             CEEEEEEECBT-TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSC
T ss_pred             eEEEEEEEECC-CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            35788888876 689999963          24 899999999999999 9999999  999999999999999999865


Q ss_pred             C-cEEEEEeCCCC
Q psy6995         314 S-LVTVTVIPALS  325 (342)
Q Consensus       314 ~-~V~v~VipP~~  325 (342)
                      . .|.|+|..+..
T Consensus        82 ~~~v~l~v~R~~~   94 (105)
T 2awx_A           82 SDFVYLKVAKPTS   94 (105)
T ss_dssp             CSEEEEEEECCCC
T ss_pred             CCeEEEEEEcCCC
Confidence            4 78999987643

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.18  E-value=1e-10  Score=93.47  Aligned_cols=79  Identities=16%  Similarity=0.211  Sum_probs=67.7

Q ss_pred             CCceEEEeecCCCCCCCeEEcC--Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEEE
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQP--DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVT  319 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~--EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v~  319 (342)
                      +++.++.|.+....+|||.+..  .| +|.+|.++|+|++|| ||+||+|  |||++|.+++|++++.+++.. ..|.|+
T Consensus         1 ~~~~~v~L~k~~~~glG~~i~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~   80 (106)
T 2la8_A            1 LEKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSME   80 (106)
T ss_dssp             CEEEEEEECCBSSSTTCCEEEECSSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCEEEE
T ss_pred             CeEEEEEEEeCCCCccCEEEEeCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEE
Confidence            3577888987777789999853  35 799999999999999 9999999  999999999999999999854 478998


Q ss_pred             EeCCCC
Q psy6995         320 VIPALS  325 (342)
Q Consensus       320 VipP~~  325 (342)
                      |..+.+
T Consensus        81 v~R~~~   86 (106)
T 2la8_A           81 VTRPKP   86 (106)
T ss_dssp             EEECCS
T ss_pred             EEeCCC
Confidence            887643

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.18  E-value=4.7e-11  Score=90.70  Aligned_cols=75  Identities=25%  Similarity=0.389  Sum_probs=64.6

Q ss_pred             CceEEEeecCCCCCCCeEEcC-----Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC---c
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP-----DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS---L  315 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~-----EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~---~  315 (342)
                      +.++++|.|.. .+|||.+..     ++ +|.+|.++|+|++|| |++||+|  |||++|..++|++++++|+...   .
T Consensus         2 ~~~~v~l~~~~-~g~G~~~~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~   80 (90)
T 2q9v_A            2 MEQDIFLWRKE-TGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGH   80 (90)
T ss_dssp             EEEEEEEECBT-TBCCEEEEECSSTTSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTE
T ss_pred             CcEEEEEEECC-CccCEEEEccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCe
Confidence            46788899987 679999963     23 899999999999999 9999999  9999999999999999998543   6


Q ss_pred             EEEEEeCC
Q psy6995         316 VTVTVIPA  323 (342)
Q Consensus       316 V~v~VipP  323 (342)
                      |.|+|...
T Consensus        81 v~l~v~R~   88 (90)
T 2q9v_A           81 VNLTVRQT   88 (90)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEec
Confidence            88888643

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.18  E-value=5.1e-11  Score=94.93  Aligned_cols=90  Identities=26%  Similarity=0.436  Sum_probs=75.2

Q ss_pred             hhHHHHHHhhhccCCCCCceEEEeecCCCCCCCeEEcC--------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccc
Q psy6995         231 DELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQP--------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAV  298 (342)
Q Consensus       231 edl~EIV~RL~~VT~Gcet~El~LrR~~~gqLGFhV~~--------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV  298 (342)
                      +++...+..   ...+.+.+.+.|.|...++|||.+.+        .| +|++|.++|+|++|| |++||+|  |||++|
T Consensus         6 ~~~~~~~~~---~~~~~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v   82 (117)
T 2o2t_A            6 DEFDQLIKN---MAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQAL   82 (117)
T ss_dssp             HHHHHHHHH---HHTTSCEEEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEEC
T ss_pred             HHHHHHHHh---hccCCeEEEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEEC
Confidence            555555543   45678899999999877899999963        24 799999999999999 9999999  999999


Q ss_pred             c-CCCHHHHHHHHhcc-CcEEEEEeCC
Q psy6995         299 S-TLSHDQMVDLLKTS-SLVTVTVIPA  323 (342)
Q Consensus       299 ~-~lsHeq~vdlLrts-~~V~v~VipP  323 (342)
                      . .++|++++.+|+.. ..|.|+|...
T Consensus        83 ~~~~~~~~~~~~l~~~~~~v~l~v~R~  109 (117)
T 2o2t_A           83 DQTITHQQAISILQKAKDTVQLVIARG  109 (117)
T ss_dssp             CTTSCHHHHHHHHHHCCSEEEEEEESS
T ss_pred             CCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence            8 99999999999854 4788888764

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.18  E-value=5.7e-11  Score=93.14  Aligned_cols=78  Identities=26%  Similarity=0.393  Sum_probs=66.4

Q ss_pred             CCceEEEeecCCCCCCCeEEcC-----Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc---C
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQP-----DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS---S  314 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~-----EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts---~  314 (342)
                      .+.++++|.|. ...|||.+..     .| +|..|.++++|++|| |++||+|  |||++|..++|++++++|+..   .
T Consensus         8 ~~~~~v~l~~~-~~g~G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~   86 (103)
T 1uep_A            8 YKELDVHLRRM-ESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNG   86 (103)
T ss_dssp             EEEECCEEESS-SSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHT
T ss_pred             ceEEEEEEEeC-CCccCEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence            35667778884 4679999975     23 899999999999999 9999999  999999999999999999864   5


Q ss_pred             cEEEEEeCCCC
Q psy6995         315 LVTVTVIPALS  325 (342)
Q Consensus       315 ~V~v~VipP~~  325 (342)
                      .|+|+|.....
T Consensus        87 ~v~l~v~R~~~   97 (103)
T 1uep_A           87 QVNLTVRRKVL   97 (103)
T ss_dssp             EEEEEEEEECC
T ss_pred             cEEEEEEeCCC
Confidence            79998876544

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.18  E-value=1.6e-10  Score=90.46  Aligned_cols=77  Identities=22%  Similarity=0.316  Sum_probs=65.5

Q ss_pred             CCceEEEeecCCCCCCCeEEcCCc--------eEEEEcccchhhh-hCCCCCCEE--eecccccCCCHHHHHHHHhc--c
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQPDG--------LVTEVEHMGLAYQ-EGLKQGCRL--ICKVAVSTLSHDQMVDLLKT--S  313 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~EG--------~Vt~VE~~g~Ae~-AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt--s  313 (342)
                      .+.+++.+.+.....|||.+.+++        +|++|.++++|++ |||++||+|  |||++|...+|++++++|+.  .
T Consensus         8 ~~~~~v~l~k~~g~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~   87 (101)
T 2yt7_A            8 DNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKS   87 (101)
T ss_dssp             CCCEEEEEECCTTCCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTT
T ss_pred             CceEEEEEEeCCCCccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            357888888865579999996432        8999999999999 679999999  99999999999999999985  2


Q ss_pred             -CcEEEEEeCC
Q psy6995         314 -SLVTVTVIPA  323 (342)
Q Consensus       314 -~~V~v~VipP  323 (342)
                       ..|+|+|.++
T Consensus        88 g~~v~l~v~R~   98 (101)
T 2yt7_A           88 QTSVTLSIVHC   98 (101)
T ss_dssp             SSEEEEEECCC
T ss_pred             CCeEEEEEEeC
Confidence             3688888654

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.17  E-value=1.2e-10  Score=93.15  Aligned_cols=77  Identities=21%  Similarity=0.320  Sum_probs=65.4

Q ss_pred             CceEEEeecCCCCCCCeEEcC-----C--c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC--
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP-----D--G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS--  314 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~-----E--G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~--  314 (342)
                      +.+.+++.+.  .+|||.+..     .  + +|.+|.++|+|++|| |++||+|  |||+++..++|++++++|+.+.  
T Consensus        15 ~~~~v~l~k~--~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r   92 (109)
T 1wi4_A           15 AFRVITVTKE--TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLR   92 (109)
T ss_dssp             TEEEEEECCS--SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCS
T ss_pred             cEEEEEEeCC--CccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccC
Confidence            4577888885  689999962     2  3 899999999999999 9999999  9999999999999999998543  


Q ss_pred             ---cEEEEEeCCCCC
Q psy6995         315 ---LVTVTVIPALSD  326 (342)
Q Consensus       315 ---~V~v~VipP~~d  326 (342)
                         .+.|.+++...+
T Consensus        93 ~~~~~~l~v~R~~~~  107 (109)
T 1wi4_A           93 SESPWEIAFIRSGPS  107 (109)
T ss_dssp             SSSCEEEEEECCCCC
T ss_pred             CCceEEEEEEeCCCC
Confidence               688888876543

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.17  E-value=6.9e-11  Score=95.62  Aligned_cols=75  Identities=28%  Similarity=0.455  Sum_probs=64.8

Q ss_pred             CceEEEeecCCCCCCCeEEcC----------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP----------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS  313 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~----------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts  313 (342)
                      +.+++.|.|.. .+|||.+..          .| +|++|.++|+|++|| |++||+|  |||++|..++|++++.+|+..
T Consensus        24 ~~~~v~l~k~~-~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~  102 (117)
T 2byg_A           24 TVVEIKLFKGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNT  102 (117)
T ss_dssp             EEEEEEEECBT-TBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             ceEEEEEEeCC-CCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            46778888776 899999973          13 899999999999999 9999999  999999999999999999954


Q ss_pred             C-cEEEEEeCC
Q psy6995         314 S-LVTVTVIPA  323 (342)
Q Consensus       314 ~-~V~v~VipP  323 (342)
                      . .|+|+|..+
T Consensus       103 g~~v~l~v~R~  113 (117)
T 2byg_A          103 SEVVYLKVGKP  113 (117)
T ss_dssp             CSEEEEEEEEE
T ss_pred             CCeEEEEEEeC
Confidence            4 788888754

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1.9e-11  Score=99.41  Aligned_cols=77  Identities=29%  Similarity=0.470  Sum_probs=65.9

Q ss_pred             CceEEEeecCCCCCCCeEEcC---------------------------------Cc-eEEEEcccchhhhhCCCCCCEE-
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP---------------------------------DG-LVTEVEHMGLAYQEGLKQGCRL-  292 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~---------------------------------EG-~Vt~VE~~g~Ae~AGLR~G~RL-  292 (342)
                      .++.++|.|.. .+|||+++.                                 +| +|..|.++++|++|||++||+| 
T Consensus         8 ~~r~v~l~r~~-~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~   86 (126)
T 2yuy_A            8 GPKTVTLKRTS-QGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAGLCTGDRII   86 (126)
T ss_dssp             SCCCEEEECCS-SSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHTCCSSCCCC
T ss_pred             CCEEEEEEECC-CCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcCCCCCCEEE
Confidence            46788899876 569999974                                 23 6899999999999999999999 


Q ss_pred             -eecccccCCCHHHHHHHHhccC-cEEEEEeCCCC
Q psy6995         293 -ICKVAVSTLSHDQMVDLLKTSS-LVTVTVIPALS  325 (342)
Q Consensus       293 -Icg~sV~~lsHeq~vdlLrts~-~V~v~VipP~~  325 (342)
                       |||++|..++|++++++|+... .|.|+|.+..+
T Consensus        87 ~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~  121 (126)
T 2yuy_A           87 KVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDS  121 (126)
T ss_dssp             EETTEECSSCCHHHHHHHHHTCTTEEEEECCCCCC
T ss_pred             EECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence             9999999999999999998644 78888876543

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.17  E-value=6.8e-11  Score=95.87  Aligned_cols=76  Identities=28%  Similarity=0.453  Sum_probs=66.1

Q ss_pred             CceEEEeecCCCCCCCeEEcCC--------c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-C
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD--------G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-S  314 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E--------G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-~  314 (342)
                      +.++++|.|.. .+|||.+...        | +|++|.++|+|++|| |++||+|  |||++|..++|++++.+|+.. .
T Consensus        25 ~~~~v~L~k~~-~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~  103 (117)
T 2fne_A           25 QCKSITLERGP-DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKG  103 (117)
T ss_dssp             EEEEEEECCBT-TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             ccEEEEEEeCC-CcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            46789999987 6799999631        3 899999999999999 9999999  999999999999999999854 4


Q ss_pred             cEEEEEeCCC
Q psy6995         315 LVTVTVIPAL  324 (342)
Q Consensus       315 ~V~v~VipP~  324 (342)
                      .|+|+|.+..
T Consensus       104 ~v~l~v~R~g  113 (117)
T 2fne_A          104 TVTLMVLSSD  113 (117)
T ss_dssp             SEEEEEEECS
T ss_pred             eEEEEEEeCC
Confidence            7888887653

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.17  E-value=1.1e-10  Score=92.72  Aligned_cols=78  Identities=17%  Similarity=0.278  Sum_probs=65.4

Q ss_pred             CCCceEEEeecCCCCCCCeEEcCC------c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc--
Q psy6995         246 GSPAQELTLKRNGLGQLGFHVQPD------G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS--  313 (342)
Q Consensus       246 Gcet~El~LrR~~~gqLGFhV~~E------G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts--  313 (342)
                      |-..+.+.|+|.. .+|||.+...      + +|..|.++++|++|| |++||+|  |||+++..++|++++++|+.+  
T Consensus         4 g~~~~~v~l~k~~-~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~   82 (103)
T 1ufx_A            4 GSSGTLVRVKKSA-ATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFK   82 (103)
T ss_dssp             CSSSEEEEEECCS-SSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHH
T ss_pred             CCceEEEEEEcCC-CcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcc
Confidence            4456778887755 7899999642      2 899999999999999 9999999  999999999999999999863  


Q ss_pred             ----CcEEEEEeCCC
Q psy6995         314 ----SLVTVTVIPAL  324 (342)
Q Consensus       314 ----~~V~v~VipP~  324 (342)
                          ..+.++|+.-.
T Consensus        83 ~~~~~~i~l~v~r~~   97 (103)
T 1ufx_A           83 TKDRDYIDFLVTEFN   97 (103)
T ss_dssp             CSSCSEEEEEECCCC
T ss_pred             cCCCCeEEEEEEEcc
Confidence                25778877654

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.17  E-value=8e-11  Score=90.53  Aligned_cols=75  Identities=25%  Similarity=0.407  Sum_probs=64.2

Q ss_pred             CceEEEeecCCCCCCCeEEcCC---------c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD---------G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-  313 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E---------G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-  313 (342)
                      ++.+++|.|+. ..|||.+...         | +|..|.++++|++|| |++||+|  |||+++.+++|+++.++|+.. 
T Consensus         3 ~~~~v~l~k~~-~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g   81 (97)
T 2jil_A            3 RTVEVTLHKEG-NTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG   81 (97)
T ss_dssp             EEEEEEEECBT-TBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             eEEEEEEEeCC-CccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            46778888854 7899999532         3 699999999999999 9999999  999999999999999999963 


Q ss_pred             CcEEEEEeCC
Q psy6995         314 SLVTVTVIPA  323 (342)
Q Consensus       314 ~~V~v~VipP  323 (342)
                      ..+.|+|...
T Consensus        82 ~~v~l~v~R~   91 (97)
T 2jil_A           82 QEAALLIEYD   91 (97)
T ss_dssp             SEEEEEEEEE
T ss_pred             CeEEEEEEeC
Confidence            3688888754

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.17  E-value=1e-10  Score=89.88  Aligned_cols=76  Identities=21%  Similarity=0.323  Sum_probs=65.5

Q ss_pred             CceEEEeecCCC-CCCCeEEcC----Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-CcEE
Q psy6995         248 PAQELTLKRNGL-GQLGFHVQP----DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVT  317 (342)
Q Consensus       248 et~El~LrR~~~-gqLGFhV~~----EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~  317 (342)
                      ++.+++|.|... ..|||.+..    .| +|.+|.++|+|++|| |++||+|  |||++|.+++|++++.+++.. ..|.
T Consensus         3 ~~~~v~l~k~~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~   82 (95)
T 2vwr_A            3 EILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVN   82 (95)
T ss_dssp             EEEEEEEECSSTTCCCCEEEEECSSSCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEE
T ss_pred             EEEEEEEEECCCCCcccEEEEeccCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEE
Confidence            567889999744 799999943    24 899999999999999 9999999  999999999999999999854 4788


Q ss_pred             EEEeCC
Q psy6995         318 VTVIPA  323 (342)
Q Consensus       318 v~VipP  323 (342)
                      +++...
T Consensus        83 l~v~R~   88 (95)
T 2vwr_A           83 LTIARP   88 (95)
T ss_dssp             EEEEEE
T ss_pred             EEEEcC
Confidence            888764

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=99.17  E-value=8.7e-11  Score=95.01  Aligned_cols=76  Identities=12%  Similarity=0.189  Sum_probs=66.4

Q ss_pred             CceEEEeecCCCCCCCeEEcC-----Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-cEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP-----DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVT  317 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~-----EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~  317 (342)
                      .+++++|.|+..+.|||.+..     .| +|..|.++|+|++|| |++||+|  |||++|..++|++++.+|+... .|+
T Consensus        19 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~v~   98 (125)
T 3hpk_A           19 VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT   98 (125)
T ss_dssp             EEEEEEEECCTTSCCCEEEEECSSCCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEE
T ss_pred             CCeEEEEEeCCCCCcCEEEeccCCCCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            467888999888999999853     23 799999999999999 9999999  9999999999999999999544 688


Q ss_pred             EEEeCC
Q psy6995         318 VTVIPA  323 (342)
Q Consensus       318 v~VipP  323 (342)
                      |+|...
T Consensus        99 l~v~r~  104 (125)
T 3hpk_A           99 IHYNKL  104 (125)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            887654

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.17  E-value=5e-11  Score=91.17  Aligned_cols=77  Identities=23%  Similarity=0.293  Sum_probs=64.3

Q ss_pred             CceEEEeecCCCCCCCeEEcCC----c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc-cCcEEEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD----G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT-SSLVTVT  319 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E----G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt-s~~V~v~  319 (342)
                      +++.++|.|... .|||.+...    | +|.+|.++++|++|||++||+|  |||++|..++|+++.++|+. ...|.|+
T Consensus         3 ~pr~v~l~k~~~-~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~   81 (91)
T 2vsp_A            3 KPKLCRLAKGEN-GYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLL   81 (91)
T ss_dssp             CEEEEEEECBTT-BTSCCCBCCTTCSCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEEEE
T ss_pred             CcEEEEEEeCCC-cccEEEEeccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            468889999764 799999542    3 8999999999999999999999  99999999999999999986 4479999


Q ss_pred             EeCCCC
Q psy6995         320 VIPALS  325 (342)
Q Consensus       320 VipP~~  325 (342)
                      |..+..
T Consensus        82 v~r~~~   87 (91)
T 2vsp_A           82 VCGKKA   87 (91)
T ss_dssp             EEC---
T ss_pred             EEeCCc
Confidence            987654

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.16  E-value=1.1e-10  Score=90.95  Aligned_cols=80  Identities=23%  Similarity=0.434  Sum_probs=69.2

Q ss_pred             CCCceEEEeecCCCCCCCeEEcCC----c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc-cCcEE
Q psy6995         246 GSPAQELTLKRNGLGQLGFHVQPD----G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT-SSLVT  317 (342)
Q Consensus       246 Gcet~El~LrR~~~gqLGFhV~~E----G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt-s~~V~  317 (342)
                      +-.++.++|.|.. .+|||.+..+    | +|+.|.++++|++|||++||+|  |||++|.+++|++++++|+. ...|.
T Consensus         4 ~~~~r~v~l~k~~-~g~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~   82 (102)
T 2d90_A            4 GSSGRVVVIKKGS-NGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTT   82 (102)
T ss_dssp             CSSSEEEEEECCS-SSSSCEEEECSSSSSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHHSTTEEE
T ss_pred             CCCCEEEEEeeCC-CCccEEEEeecCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEE
Confidence            4568899999966 5899999742    4 8999999999999999999999  99999999999999999986 45799


Q ss_pred             EEEeCCCCC
Q psy6995         318 VTVIPALSD  326 (342)
Q Consensus       318 v~VipP~~d  326 (342)
                      |++..+...
T Consensus        83 l~v~r~~~~   91 (102)
T 2d90_A           83 LLVLDKEAE   91 (102)
T ss_dssp             EEECSTTCC
T ss_pred             EEEEECCCc
Confidence            999876543

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.16  E-value=1.1e-10  Score=90.70  Aligned_cols=75  Identities=28%  Similarity=0.426  Sum_probs=65.4

Q ss_pred             CceEEEeecCCCCCCCeEEcC----------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP----------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS  313 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~----------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts  313 (342)
                      +++++.|.|.. .+|||.+..          .| +|.+|.++|+|++|| |++||+|  |||++|.+++|++++.+++..
T Consensus         4 ~~~~v~l~k~~-~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   82 (102)
T 2i1n_A            4 KYEEIVLERGN-SGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEA   82 (102)
T ss_dssp             EEEEEEEECBT-TBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHS
T ss_pred             eEEEEEEEECC-CcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            57788899874 689999963          24 799999999999999 9999999  999999999999999999865


Q ss_pred             -CcEEEEEeCC
Q psy6995         314 -SLVTVTVIPA  323 (342)
Q Consensus       314 -~~V~v~VipP  323 (342)
                       ..|+|+|...
T Consensus        83 g~~v~l~v~R~   93 (102)
T 2i1n_A           83 GPVVRLVVRRR   93 (102)
T ss_dssp             CSEEEEEEEEE
T ss_pred             CCeEEEEEEeC
Confidence             4788888754

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=99.16  E-value=1.1e-10  Score=91.41  Aligned_cols=75  Identities=25%  Similarity=0.299  Sum_probs=65.2

Q ss_pred             CceEEEeecCCCCCCCeEEcC-----Cc-eEEEEcccchhhhhC--CCCCCEE--eecccccCCCHHHHHHHHhccC---
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP-----DG-LVTEVEHMGLAYQEG--LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS---  314 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~-----EG-~Vt~VE~~g~Ae~AG--LR~G~RL--Icg~sV~~lsHeq~vdlLrts~---  314 (342)
                      ..+.+.|.|...++|||.+..     .| +|..|.++++|++||  |++||+|  |||++|..++|++++.+|+...   
T Consensus        17 ~~~~v~l~~~~~~~~G~~~~gg~~~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~   96 (107)
T 3nfk_A           17 NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERH   96 (107)
T ss_dssp             CCEEEEECCCTTSCCCEEEEEEGGGTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSB
T ss_pred             CEEEEEEEcCCCCCCCEEEEccCCCCCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccC
Confidence            367778888877999999964     13 899999999999999  9999999  9999999999999999998654   


Q ss_pred             --cEEEEEeC
Q psy6995         315 --LVTVTVIP  322 (342)
Q Consensus       315 --~V~v~Vip  322 (342)
                        .|.|+|.+
T Consensus        97 ~~~v~l~v~r  106 (107)
T 3nfk_A           97 SGELMLLVRP  106 (107)
T ss_dssp             TTBEEEEEEC
T ss_pred             CcEEEEEEEc
Confidence              78888754

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.16  E-value=1.5e-10  Score=87.57  Aligned_cols=74  Identities=18%  Similarity=0.245  Sum_probs=62.0

Q ss_pred             CceEEEeecCCCCCCCeEEcC-----Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP-----DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTV  318 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~-----EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v  318 (342)
                      .+..++|+  +.+.|||.+..     .| +|.+|.++++|++|||++||+|  |||++|.+.+|++++++++.. ..|.|
T Consensus         3 ~~~~v~l~--~~~~~G~~l~~g~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l   80 (88)
T 2uzc_A            3 SNYSVSLV--GPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNM   80 (88)
T ss_dssp             CEEEEEEE--SSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEE
T ss_pred             cEEEEEEc--CCCcccEEEECcCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence            45667773  33689999963     23 8999999999999999999999  999999999999999999854 46888


Q ss_pred             EEeCC
Q psy6995         319 TVIPA  323 (342)
Q Consensus       319 ~VipP  323 (342)
                      +|...
T Consensus        81 ~v~R~   85 (88)
T 2uzc_A           81 TLQRE   85 (88)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            88653

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.16  E-value=2.5e-10  Score=87.61  Aligned_cols=75  Identities=27%  Similarity=0.427  Sum_probs=65.2

Q ss_pred             CCceEEEeecCCCCCCCeEEcC--------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQP--------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-  313 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~--------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-  313 (342)
                      .+..++.|.|.. ..|||.+..        .| +|.+|.++++|++|| |++||+|  |||++|..++|++++.+|+.. 
T Consensus         4 g~~~~v~l~k~~-~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g   82 (96)
T 1d5g_A            4 GDIFEVELAKND-NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG   82 (96)
T ss_dssp             TCEEEEEEECSS-SSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCC
T ss_pred             CCEEEEEEEeCC-CCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            457888898875 799999973        24 799999999999999 9999999  999999999999999999864 


Q ss_pred             CcEEEEEeC
Q psy6995         314 SLVTVTVIP  322 (342)
Q Consensus       314 ~~V~v~Vip  322 (342)
                      ..|.|+|..
T Consensus        83 ~~v~l~v~R   91 (96)
T 1d5g_A           83 QVVHLLLEK   91 (96)
T ss_dssp             SEEEEEEEC
T ss_pred             CeEEEEEEc
Confidence            468888864

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=1.8e-10  Score=89.79  Aligned_cols=77  Identities=22%  Similarity=0.254  Sum_probs=66.7

Q ss_pred             CCceEEEeecCCCCCCCeEEcC------C-c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-C
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQP------D-G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-S  314 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~------E-G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-~  314 (342)
                      ++..+++|.|.. .+|||.+..      + | +|.+|.++++|++|| |++||+|  |||++|.+++|++++.+|+.. .
T Consensus        10 ~~~~~v~l~~~~-~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~   88 (104)
T 2djt_A           10 SGHFSVELVRGY-AGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGP   88 (104)
T ss_dssp             CCCEEEEEECCS-SSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHTCS
T ss_pred             CceEEEEEEeCC-CCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            467888898876 689999975      2 2 899999999999999 9999999  999999999999999999863 4


Q ss_pred             cEEEEEeCCC
Q psy6995         315 LVTVTVIPAL  324 (342)
Q Consensus       315 ~V~v~VipP~  324 (342)
                      .|.|+|....
T Consensus        89 ~v~l~v~R~g   98 (104)
T 2djt_A           89 QLHLVIRRPL   98 (104)
T ss_dssp             EEEEEECCCC
T ss_pred             eEEEEEEECC
Confidence            7889887653

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.16  E-value=1.1e-10  Score=91.21  Aligned_cols=76  Identities=30%  Similarity=0.413  Sum_probs=65.8

Q ss_pred             ceEEEeecCCCCCCCeEEcCC----c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEEEE
Q psy6995         249 AQELTLKRNGLGQLGFHVQPD----G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTV  320 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~E----G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v~V  320 (342)
                      ++.+.|.|.....|||.+...    | +|..|.++++|++|||++||+|  |||++|.+.+|++++++|+.. ..|+|+|
T Consensus         2 ~r~v~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v   81 (106)
T 3ngh_A            2 PRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV   81 (106)
T ss_dssp             CEEEEEECCTTCCCCCEEECCTTCCSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEEEEE
T ss_pred             CEEEEEEeCCCCeeCEEEEEEeCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEE
Confidence            567888888778899998643    4 7999999999999999999999  999999999999999999744 4788888


Q ss_pred             eCCC
Q psy6995         321 IPAL  324 (342)
Q Consensus       321 ipP~  324 (342)
                      ..+.
T Consensus        82 ~r~~   85 (106)
T 3ngh_A           82 LDGD   85 (106)
T ss_dssp             ECHH
T ss_pred             EECC
Confidence            7543

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=99.15  E-value=9.9e-11  Score=94.12  Aligned_cols=78  Identities=27%  Similarity=0.460  Sum_probs=63.3

Q ss_pred             CCCceEEEeecCCC--CCCCeEEcC---C---c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC
Q psy6995         246 GSPAQELTLKRNGL--GQLGFHVQP---D---G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS  314 (342)
Q Consensus       246 Gcet~El~LrR~~~--gqLGFhV~~---E---G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~  314 (342)
                      |..++.+.|.|...  ..|||.+..   +   | +|.+|.++++|++||||+||+|  |||++|.+++|+++.++|+...
T Consensus         4 ~~~~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~~~~   83 (94)
T 3kzd_A            4 GKVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQPS   83 (94)
T ss_dssp             CCEEEEEEEEC------CCSEEEEEECSSSSCEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHSSE
T ss_pred             ccceeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhCCe
Confidence            45678889999754  689999953   2   3 7999999999999999999999  9999999999999999998433


Q ss_pred             -cEEEEEeCC
Q psy6995         315 -LVTVTVIPA  323 (342)
Q Consensus       315 -~V~v~VipP  323 (342)
                       .++|.++|+
T Consensus        84 l~ltV~~~p~   93 (94)
T 3kzd_A           84 LGLLVRTYPE   93 (94)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEEEEecCC
Confidence             566666765

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.15  E-value=1.4e-10  Score=91.15  Aligned_cols=76  Identities=26%  Similarity=0.426  Sum_probs=66.3

Q ss_pred             CCceEEEeecCCCCCCCeEEc-------------CCc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHH
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQ-------------PDG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDL  309 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~-------------~EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdl  309 (342)
                      .+.+++.|.|.+ ..|||.+.             ..| +|.+|.++|+|++|| |++||+|  |||++|..++|++++.+
T Consensus         8 ~~~~~v~l~k~~-~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~   86 (108)
T 1q7x_A            8 GDIFEVELAKND-NSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVET   86 (108)
T ss_dssp             SSEEEEEEESSS-CSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHH
T ss_pred             CcEEEEEEEECC-CCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            357888999876 78999998             135 799999999999999 9999999  99999999999999999


Q ss_pred             Hhcc-CcEEEEEeCC
Q psy6995         310 LKTS-SLVTVTVIPA  323 (342)
Q Consensus       310 Lrts-~~V~v~VipP  323 (342)
                      ++.. ..|+|++...
T Consensus        87 ~~~~g~~v~l~v~R~  101 (108)
T 1q7x_A           87 LRNTGQVVHLLLEKG  101 (108)
T ss_dssp             HHHTTSEEEEEEECC
T ss_pred             HHcCCCeEEEEEEeC
Confidence            9865 4788888764

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.15  E-value=2e-10  Score=91.79  Aligned_cols=75  Identities=20%  Similarity=0.357  Sum_probs=65.9

Q ss_pred             CceEEEeecCCCCCCCeEEcCC--c-eEEEEcccchhhhhCC-CCCCEE--eecccccCCCHHHHHHHHhcc-CcEEEEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD--G-LVTEVEHMGLAYQEGL-KQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTV  320 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E--G-~Vt~VE~~g~Ae~AGL-R~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v~V  320 (342)
                      ..+.+.|.|.....|||.+...  | +|++|.++++|++||| ++||+|  |||+.|..++|++++.+|+.. ..|.|+|
T Consensus        25 ~~~~v~l~k~~~~~lG~~i~~~~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v  104 (113)
T 1va8_A           25 TVKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVL  104 (113)
T ss_dssp             ECEEEEEEECTTCCCCEEEEECSSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEEEE
T ss_pred             ceEEEEEEeCCCCceeEEEEeCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence            5677889998777999998643  3 8999999999999999 999999  999999999999999999854 4788888


Q ss_pred             eC
Q psy6995         321 IP  322 (342)
Q Consensus       321 ip  322 (342)
                      .+
T Consensus       105 ~r  106 (113)
T 1va8_A          105 IP  106 (113)
T ss_dssp             EC
T ss_pred             EE
Confidence            85

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.15  E-value=8.8e-11  Score=92.99  Aligned_cols=76  Identities=28%  Similarity=0.492  Sum_probs=65.5

Q ss_pred             ceEEEeecCCCCCCCeEEcCC--------------c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHH
Q psy6995         249 AQELTLKRNGLGQLGFHVQPD--------------G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLL  310 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~E--------------G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlL  310 (342)
                      .+++.|.|...+.|||.+...              | +|++|.++++|++|| |++||+|  |||++|..++|++++.+|
T Consensus        10 ~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l   89 (111)
T 1uju_A           10 LRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLL   89 (111)
T ss_dssp             SSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHH
T ss_pred             cEEEEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            567888888778999999742              2 799999999999999 9999999  999999999999999999


Q ss_pred             hccC-cEEEEEeCCC
Q psy6995         311 KTSS-LVTVTVIPAL  324 (342)
Q Consensus       311 rts~-~V~v~VipP~  324 (342)
                      +... .|.|+|....
T Consensus        90 ~~~g~~v~l~v~r~~  104 (111)
T 1uju_A           90 RSVGDTLTVLVCDGF  104 (111)
T ss_dssp             SSCSSEEEECCCCCC
T ss_pred             HcCCCeEEEEEEECC
Confidence            8654 6788776543

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=1.3e-10  Score=94.91  Aligned_cols=86  Identities=21%  Similarity=0.287  Sum_probs=70.6

Q ss_pred             CceEEEeecCCCC--CCCeEEcC------Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccCcE
Q psy6995         248 PAQELTLKRNGLG--QLGFHVQP------DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLV  316 (342)
Q Consensus       248 et~El~LrR~~~g--qLGFhV~~------EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~~V  316 (342)
                      +++++.|.|.+..  .|||.|..      .| +|+.|.++++|++||||+||+|  |||++|.+++|+++.++|+.. .+
T Consensus        15 ~~~~v~l~k~~~~~~~~G~~v~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~-~v   93 (114)
T 2d8i_A           15 VTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQP-SL   93 (114)
T ss_dssp             EEEEEEEECSCTTTCCCCCEEEEEEETTEEEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTSS-EE
T ss_pred             ceEEEEEEeCCCCccccCEEEEecCcCCcCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhCC-cE
Confidence            4678889998763  79999863      23 7999999999999999999999  999999999999999999864 78


Q ss_pred             EEEEeCCCCCCCCCcCCCc
Q psy6995         317 TVTVIPALSDGTPRRYADL  335 (342)
Q Consensus       317 ~v~VipP~~dg~PRRgc~~  335 (342)
                      .|+|..+.++ .+|..|.+
T Consensus        94 ~l~v~R~p~~-~~~~~~~~  111 (114)
T 2d8i_A           94 GLLVRTYPEL-EEGVESGP  111 (114)
T ss_dssp             EEEEEECCCS-CCSCCCSS
T ss_pred             EEEEEECCCC-CcccccCC
Confidence            8888765443 55555654

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.14  E-value=2.7e-10  Score=88.42  Aligned_cols=77  Identities=23%  Similarity=0.347  Sum_probs=65.2

Q ss_pred             CceEEEeecCCCCCCCeEEcC--------------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHH
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP--------------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDL  309 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~--------------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdl  309 (342)
                      .+..+.+.|...+.|||.++.              .| +|++|.++|+|++|| |++||+|  |||++|.+++|++++++
T Consensus         4 dp~~v~l~~~~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~   83 (103)
T 2fcf_A            4 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEA   83 (103)
T ss_dssp             SCEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CCEEEEEEeCCCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            467788888877899999953              24 899999999999999 9999999  99999999999999999


Q ss_pred             HhccC-cEEEEEeCCC
Q psy6995         310 LKTSS-LVTVTVIPAL  324 (342)
Q Consensus       310 Lrts~-~V~v~VipP~  324 (342)
                      |+... .|.|+|....
T Consensus        84 l~~~~~~v~l~v~r~~   99 (103)
T 2fcf_A           84 IRKAGNPVVFMVQSII   99 (103)
T ss_dssp             HHTCCSSEEEEEECCC
T ss_pred             HHhCCCcEEEEEEECC
Confidence            98544 7888887654

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.14  E-value=2.3e-10  Score=91.96  Aligned_cols=77  Identities=17%  Similarity=0.307  Sum_probs=65.8

Q ss_pred             CCceEEEeecCC------CCCCCeEEcCC----------c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHH
Q psy6995         247 SPAQELTLKRNG------LGQLGFHVQPD----------G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQM  306 (342)
Q Consensus       247 cet~El~LrR~~------~gqLGFhV~~E----------G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~  306 (342)
                      ++.++++|.|..      ...|||.+...          | +|.+|.++++|++|| |++||+|  |||++|..++|+++
T Consensus        11 ~~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~   90 (117)
T 1ujd_A           11 FPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEV   90 (117)
T ss_dssp             SCEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHH
T ss_pred             CceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHH
Confidence            456788899976      37899999421          3 799999999999999 9999999  99999999999999


Q ss_pred             HHHHhccC-cEEEEEeCC
Q psy6995         307 VDLLKTSS-LVTVTVIPA  323 (342)
Q Consensus       307 vdlLrts~-~V~v~VipP  323 (342)
                      +.+|+... .|.|+|...
T Consensus        91 ~~~l~~~~~~v~l~v~R~  108 (117)
T 1ujd_A           91 QSIISQQSGEAEICVRLD  108 (117)
T ss_dssp             HHHHSCCSSCEEEEEESS
T ss_pred             HHHHhcCCCEEEEEEEEC
Confidence            99998644 788888653

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.14  E-value=2.2e-10  Score=93.63  Aligned_cols=78  Identities=27%  Similarity=0.398  Sum_probs=67.2

Q ss_pred             CCceEEEeecCCC-CCCCeEEcC--------------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHH
Q psy6995         247 SPAQELTLKRNGL-GQLGFHVQP--------------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMV  307 (342)
Q Consensus       247 cet~El~LrR~~~-gqLGFhV~~--------------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~v  307 (342)
                      .+.+.+.|.|.+. +.|||.+..              .| +|+.|.++|+|++|| |++||+|  |||++|...+|++++
T Consensus        28 ~~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~  107 (128)
T 1nf3_C           28 ETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVT  107 (128)
T ss_dssp             TTCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHH
T ss_pred             CccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            4578899999864 899999952              24 799999999999999 9999999  999999999999999


Q ss_pred             HHHhcc-CcEEEEEeCCC
Q psy6995         308 DLLKTS-SLVTVTVIPAL  324 (342)
Q Consensus       308 dlLrts-~~V~v~VipP~  324 (342)
                      .+|+.. ..|+|+|.+..
T Consensus       108 ~~l~~~~~~v~l~v~r~~  125 (128)
T 1nf3_C          108 DMMIANSRNLIITVRPAN  125 (128)
T ss_dssp             HHHHHTTTSEEEEEECCC
T ss_pred             HHHHcCCCeEEEEEEECC
Confidence            999843 47999888753

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=8.2e-11  Score=91.62  Aligned_cols=81  Identities=22%  Similarity=0.383  Sum_probs=68.5

Q ss_pred             ceEEEeecCCC-CCCCeEEcCC-c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc-cCcEEEEEeC
Q psy6995         249 AQELTLKRNGL-GQLGFHVQPD-G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT-SSLVTVTVIP  322 (342)
Q Consensus       249 t~El~LrR~~~-gqLGFhV~~E-G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt-s~~V~v~Vip  322 (342)
                      +++++|.|+.. +.|||.+..+ | +|++|.++++|+ |||++||+|  |||++|.+++|++++.+++. ...|.|+|..
T Consensus         9 ~~~v~l~~~~~~~~~G~~l~~~~~~~V~~V~~~spA~-agL~~GD~Il~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R   87 (96)
T 2edv_A            9 RHTVKIDKDTLLQDYGFHISESLPLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVR   87 (96)
T ss_dssp             EEEEEECCCSSSCSCSBCCCSSSSCBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCCHHHHHHHHHHCSSCEEEEEEE
T ss_pred             cEEEEEEECCCCCcccEEEecCCCeEEEEECCCCchh-hCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            57788999865 6899999765 3 899999999996 999999999  99999999999999999995 4579999987


Q ss_pred             CCCCCCCCc
Q psy6995         323 ALSDGTPRR  331 (342)
Q Consensus       323 P~~dg~PRR  331 (342)
                      +. .+.|..
T Consensus        88 ~~-~~~p~s   95 (96)
T 2edv_A           88 CT-SSGPSS   95 (96)
T ss_dssp             CC-CCSSCC
T ss_pred             CC-CCCCCC
Confidence            65 445543

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.13  E-value=1.6e-10  Score=87.83  Aligned_cols=73  Identities=19%  Similarity=0.263  Sum_probs=60.3

Q ss_pred             ceEEEeecCCCCCCCeEEcC-----Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEEE
Q psy6995         249 AQELTLKRNGLGQLGFHVQP-----DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVT  319 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~-----EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v~  319 (342)
                      +.++++.  +.+.|||.+..     .| +|.+|.++++|++|||++||+|  |||++|.+++|++++.+++.. ..|.++
T Consensus         4 ~~~v~~~--~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~   81 (89)
T 2q3g_A            4 SFKVVLE--GPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLG   81 (89)
T ss_dssp             EEEEEEE--SSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEEEE
T ss_pred             EEEEEEc--CCCcccEEEECcCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEE
Confidence            3445554  45789999964     23 7999999999999999999999  999999999999999999854 468888


Q ss_pred             EeCC
Q psy6995         320 VIPA  323 (342)
Q Consensus       320 VipP  323 (342)
                      |...
T Consensus        82 v~R~   85 (89)
T 2q3g_A           82 LSRA   85 (89)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            8653

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.13  E-value=2.4e-10  Score=85.92  Aligned_cols=71  Identities=18%  Similarity=0.298  Sum_probs=60.7

Q ss_pred             eEEEeecCCCCCCCeEEcC--C---c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc---CcEE
Q psy6995         250 QELTLKRNGLGQLGFHVQP--D---G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS---SLVT  317 (342)
Q Consensus       250 ~El~LrR~~~gqLGFhV~~--E---G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts---~~V~  317 (342)
                      .+++|.|.. .+|||.+..  +   | +|.+|.++++|++|| |++||+|  |||++|..++|+++.++|+..   ..|.
T Consensus         2 ~~v~l~k~~-~g~G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~   80 (85)
T 2i04_A            2 IHTKLRKSS-RGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVD   80 (85)
T ss_dssp             EEEEEECBT-TBSSEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEE
T ss_pred             EEEEEEECC-CCCCEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEE
Confidence            467788865 579999964  2   2 899999999999999 9999999  999999999999999999864   4677


Q ss_pred             EEEe
Q psy6995         318 VTVI  321 (342)
Q Consensus       318 v~Vi  321 (342)
                      ++|.
T Consensus        81 l~v~   84 (85)
T 2i04_A           81 LELC   84 (85)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7764

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.13  E-value=2.6e-10  Score=86.74  Aligned_cols=75  Identities=23%  Similarity=0.311  Sum_probs=64.3

Q ss_pred             CCceEEEeecCCC-CCCCeEEcC----Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEE
Q psy6995         247 SPAQELTLKRNGL-GQLGFHVQP----DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVT  317 (342)
Q Consensus       247 cet~El~LrR~~~-gqLGFhV~~----EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~  317 (342)
                      .++.+++|.|... ..|||.+..    .| +|.+|.++++|++|||++||+|  |||++|.+.+|++++.+++... .|.
T Consensus         5 ~~~~~v~l~k~~~~~~~G~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~   84 (91)
T 1m5z_A            5 VELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLD   84 (91)
T ss_dssp             CEEEEEEEECCTTCSSSSEEEEECTTSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEE
T ss_pred             cceEEEEEEECCCCCCccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEE
Confidence            4678889998754 689999953    25 6999999999999999999999  9999999999999999998544 677


Q ss_pred             EEEe
Q psy6995         318 VTVI  321 (342)
Q Consensus       318 v~Vi  321 (342)
                      |+|.
T Consensus        85 l~v~   88 (91)
T 1m5z_A           85 LVIS   88 (91)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7775

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.13  E-value=1.3e-10  Score=91.45  Aligned_cols=77  Identities=16%  Similarity=0.283  Sum_probs=66.5

Q ss_pred             CCCceEEEeecCCCCCCCeEEcC-----------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHH
Q psy6995         246 GSPAQELTLKRNGLGQLGFHVQP-----------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLL  310 (342)
Q Consensus       246 Gcet~El~LrR~~~gqLGFhV~~-----------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlL  310 (342)
                      .++..++.|.|.. ..|||.+..           .| +|.+|.++++|++|| |++||+|  |||++|..++|++++.+|
T Consensus         7 ~~~~~~v~l~k~~-~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~   85 (107)
T 1wf8_A            7 GLELFPVELEKDE-DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVL   85 (107)
T ss_dssp             CEEEEEEEEECBT-TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHH
T ss_pred             CceEEEEEEEECC-CcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4567788888875 589999976           13 899999999999999 9999999  999999999999999999


Q ss_pred             hccC-cEEEEEeCC
Q psy6995         311 KTSS-LVTVTVIPA  323 (342)
Q Consensus       311 rts~-~V~v~VipP  323 (342)
                      +... .|.|+|...
T Consensus        86 ~~~~~~v~l~v~R~   99 (107)
T 1wf8_A           86 RNTKGNVRFVIGRE   99 (107)
T ss_dssp             HHCCSEEEEEEEEE
T ss_pred             hcCCCeEEEEEEeC
Confidence            8544 788888764

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.13  E-value=2.3e-10  Score=88.82  Aligned_cols=80  Identities=16%  Similarity=0.205  Sum_probs=67.1

Q ss_pred             CCceEEEeecCCCCCCCeEEcC--Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEEE
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQP--DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVT  319 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~--EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v~  319 (342)
                      .++.++.|.+....+|||.+..  .| +|.+|.++|+|++|| |++||+|  |||++|..++|++++.+++.. ..|.|+
T Consensus         7 ~~~~~v~l~~~~~~glG~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~~~v~l~   86 (96)
T 2qkv_A            7 LEKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSME   86 (96)
T ss_dssp             CCCEEEEEECBTTBCCCEEEEECSSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEE
T ss_pred             CceEEEEEEeCCCCCccEEEEeCCCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEE
Confidence            3567777877655789998853  34 899999999999999 9999999  999999999999999999864 479999


Q ss_pred             EeCCCCC
Q psy6995         320 VIPALSD  326 (342)
Q Consensus       320 VipP~~d  326 (342)
                      |..|.++
T Consensus        87 v~R~~p~   93 (96)
T 2qkv_A           87 VTRPKPA   93 (96)
T ss_dssp             EECCCC-
T ss_pred             EEeCCcc
Confidence            9887554

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.13  E-value=3.2e-10  Score=85.04  Aligned_cols=72  Identities=25%  Similarity=0.317  Sum_probs=60.6

Q ss_pred             eEEEeecCCCCCCCeEEcCC-----c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEEEE
Q psy6995         250 QELTLKRNGLGQLGFHVQPD-----G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTV  320 (342)
Q Consensus       250 ~El~LrR~~~gqLGFhV~~E-----G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v~V  320 (342)
                      ..++|+  +.+.|||.+...     | +|.+|.++++|++|||++||+|  |||++|.+.+|++++.+++.. ..|.|+|
T Consensus         3 ~~v~l~--~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v   80 (85)
T 1rgw_A            3 YSVTLT--GPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTL   80 (85)
T ss_dssp             EEEEEC--CSSCCCEEECCCGGGTSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEE
T ss_pred             EEEEEe--CCCccCEEEEeccCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEEEEE
Confidence            456664  346899999642     4 8999999999999999999999  999999999999999999854 4688888


Q ss_pred             eCC
Q psy6995         321 IPA  323 (342)
Q Consensus       321 ipP  323 (342)
                      ...
T Consensus        81 ~R~   83 (85)
T 1rgw_A           81 QKS   83 (85)
T ss_dssp             ESC
T ss_pred             EeC
Confidence            653

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.12  E-value=2.3e-10  Score=91.33  Aligned_cols=76  Identities=18%  Similarity=0.320  Sum_probs=65.3

Q ss_pred             CCceEEEeecCCCCCCCeEEcCC-----c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-CcE
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQPD-----G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLV  316 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~E-----G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V  316 (342)
                      .+.+++.|.|.. .+|||.+...     | +|.+|.++++|++|| |++||+|  |||++|...+|++++.+++.. ..|
T Consensus        23 ~~~~~v~l~~~~-~glG~~l~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v  101 (112)
T 2r4h_A           23 MDFYTVELERGA-KGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRV  101 (112)
T ss_dssp             CCEEEEEEECBT-TBTSEEEEECGGGTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEE
T ss_pred             CceEEEEEEcCC-CccCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            457888898876 5699999643     4 899999999999999 9999999  999999999999999999854 468


Q ss_pred             EEEEeCC
Q psy6995         317 TVTVIPA  323 (342)
Q Consensus       317 ~v~VipP  323 (342)
                      +|+|...
T Consensus       102 ~l~v~R~  108 (112)
T 2r4h_A          102 RLFLKRG  108 (112)
T ss_dssp             EEEEECC
T ss_pred             EEEEEeC
Confidence            8888653

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.12  E-value=1.4e-10  Score=93.84  Aligned_cols=77  Identities=23%  Similarity=0.321  Sum_probs=67.8

Q ss_pred             CCceEEEeecCCCCCCCeEEcCC--------c--eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQPD--------G--LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS  313 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~E--------G--~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts  313 (342)
                      +++++++|.|.....|||.+...        .  +|.+|.++++|++|| |++||+|  |||++|.+++|++++++|+..
T Consensus        14 ~~~~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~   93 (122)
T 1v5q_A           14 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS   93 (122)
T ss_dssp             EEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHH
T ss_pred             ceeEEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            47888899998779999999742        1  899999999999999 9999999  999999999999999999864


Q ss_pred             ---CcEEEEEeCC
Q psy6995         314 ---SLVTVTVIPA  323 (342)
Q Consensus       314 ---~~V~v~VipP  323 (342)
                         ..|+|+|...
T Consensus        94 ~~g~~v~l~v~R~  106 (122)
T 1v5q_A           94 SITSKVTLEIEFD  106 (122)
T ss_dssp             TTTTCEEEEEEEE
T ss_pred             CCCCeEEEEEEEC
Confidence               3788888754

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.12  E-value=8.4e-11  Score=96.37  Aligned_cols=76  Identities=20%  Similarity=0.434  Sum_probs=64.4

Q ss_pred             ceEEEeecCCCCCCCeEEcCC---------c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc--
Q psy6995         249 AQELTLKRNGLGQLGFHVQPD---------G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS--  313 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~E---------G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts--  313 (342)
                      +.++.|.+.+...|||.+...         | +|..|.++|+|++|| |++||+|  |||++|..++|++++++|+.+  
T Consensus        26 ~~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~  105 (127)
T 1wg6_A           26 TLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMS  105 (127)
T ss_dssp             EEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhc
Confidence            344556656678999999642         3 899999999999999 9999999  999999999999999999964  


Q ss_pred             ------CcEEEEEeCCC
Q psy6995         314 ------SLVTVTVIPAL  324 (342)
Q Consensus       314 ------~~V~v~VipP~  324 (342)
                            ..|+|+|....
T Consensus       106 ~~g~~~~~v~l~v~R~~  122 (127)
T 1wg6_A          106 MEGNIRGMIQLVILRRS  122 (127)
T ss_dssp             HHHHHTCEEEEEEEECS
T ss_pred             cccCCCCEEEEEEEeCC
Confidence                  57999988643

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.11  E-value=3.4e-10  Score=89.15  Aligned_cols=80  Identities=28%  Similarity=0.405  Sum_probs=65.2

Q ss_pred             CceEEEeecCCCCCCCeEEcCC--------c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc--
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD--------G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS--  313 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E--------G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts--  313 (342)
                      +...+.+.+.. ..|||.+...        | +|.+|.++++|++|| |++||+|  |||++|...+|++++++|+..  
T Consensus        11 ~~~~~~l~~~~-~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~   89 (111)
T 2koj_A           11 KRLNIQLKKGT-EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKM   89 (111)
T ss_dssp             EEEEEEEECBT-TBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCC
T ss_pred             cEEEEEEEECC-CccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            34555666654 6899999643        2 899999999999999 9999999  999999999999999999863  


Q ss_pred             -CcEEEEEeCCCCCCC
Q psy6995         314 -SLVTVTVIPALSDGT  328 (342)
Q Consensus       314 -~~V~v~VipP~~dg~  328 (342)
                       ..|.|+|......-.
T Consensus        90 g~~v~l~v~R~~~~~~  105 (111)
T 2koj_A           90 EGTVSLLVFRQEEAFH  105 (111)
T ss_dssp             SSEEEEEEEECCCCCC
T ss_pred             CCeEEEEEEeCCCCcc
Confidence             478999877544333

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.11  E-value=1.8e-10  Score=93.40  Aligned_cols=78  Identities=19%  Similarity=0.348  Sum_probs=67.6

Q ss_pred             CCceEEEeecCCCCCCCeEEcC----------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhc
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQP----------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKT  312 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~----------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrt  312 (342)
                      .+..++.|.|.+...|||.+..          .| +|..|.++++|++|| |++||+|  |||++|..++|++++++|+.
T Consensus        14 ~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~   93 (129)
T 2dmz_A           14 FETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRN   93 (129)
T ss_dssp             EEEEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHH
T ss_pred             CcEEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            3567888878777899999964          34 799999999999999 9999999  99999999999999999986


Q ss_pred             -cCcEEEEEeCCC
Q psy6995         313 -SSLVTVTVIPAL  324 (342)
Q Consensus       313 -s~~V~v~VipP~  324 (342)
                       ...|.|+|....
T Consensus        94 ~~~~v~l~v~R~~  106 (129)
T 2dmz_A           94 AGQVVHLTLVRRK  106 (129)
T ss_dssp             CCSSEEEEEEEES
T ss_pred             CCCeEEEEEEeCC
Confidence             447899887654

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.11  E-value=4.1e-10  Score=86.35  Aligned_cols=75  Identities=27%  Similarity=0.452  Sum_probs=63.4

Q ss_pred             CceEEEeecCCCCCCCeEEcC-----------Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc-
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP-----------DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT-  312 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~-----------EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt-  312 (342)
                      +...+.+.+. .+.|||.+..           .| +|+.|.++++|++|||++||+|  |||++|.+.+|.+++..++. 
T Consensus         3 ~~~~v~~~~~-~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~   81 (97)
T 2w4f_A            3 EELTLTILRQ-TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGA   81 (97)
T ss_dssp             CEEEEEEECB-TTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred             eEEEEEEEeC-CCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhCC
Confidence            3456677777 5899999962           34 7999999999999999999999  99999999999999988874 


Q ss_pred             cCcEEEEEeCC
Q psy6995         313 SSLVTVTVIPA  323 (342)
Q Consensus       313 s~~V~v~VipP  323 (342)
                      ...|.|+|...
T Consensus        82 g~~v~l~v~R~   92 (97)
T 2w4f_A           82 GTAVQMRVWRE   92 (97)
T ss_dssp             CSEEEEEEECC
T ss_pred             CCeEEEEEEeC
Confidence            44788888764

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.11  E-value=6.6e-11  Score=95.71  Aligned_cols=87  Identities=21%  Similarity=0.257  Sum_probs=71.2

Q ss_pred             ceEEEeecCCCCCCCeEEcCC-c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC--cEEEEEeC
Q psy6995         249 AQELTLKRNGLGQLGFHVQPD-G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS--LVTVTVIP  322 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~E-G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~--~V~v~Vip  322 (342)
                      .+.+.|.|. .++|||.+..+ + +|..|.++++|++|||++||+|  |||++|..++|++++++|+...  .|.|+|++
T Consensus        16 ~r~v~l~~~-~~~~G~~l~~~~~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~~   94 (111)
T 1vae_A           16 PRGIHFTVE-EGDLGFTLRGNTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVS   94 (111)
T ss_dssp             CCCCCEECC-SSCCSCCEESSSSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEEC
T ss_pred             CeEEEEEcC-CCcccEEEeCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEe
Confidence            455667774 48999999755 3 5899999999999999999999  9999999999999999998544  49999998


Q ss_pred             CCCCCC-CCcCCCcc
Q psy6995         323 ALSDGT-PRRYADLK  336 (342)
Q Consensus       323 P~~dg~-PRRgc~~~  336 (342)
                      +.+... |++-+.+|
T Consensus        95 ~~~~~~~~~~~~~~~  109 (111)
T 1vae_A           95 LLDSTSSMHNKSGPS  109 (111)
T ss_dssp             EECCCCCCCCCCCCC
T ss_pred             cCCCccccCCCCCCC
Confidence            887774 44445544

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.10  E-value=2.8e-10  Score=89.28  Aligned_cols=77  Identities=18%  Similarity=0.304  Sum_probs=65.3

Q ss_pred             CCceEEEeec-CCCCCCCeEEcC----------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHh
Q psy6995         247 SPAQELTLKR-NGLGQLGFHVQP----------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLK  311 (342)
Q Consensus       247 cet~El~LrR-~~~gqLGFhV~~----------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLr  311 (342)
                      .++.++.|.| .....|||.+..          .| +|.+|.++++|++|| |++||+|  |||++|.+++|++++.+|+
T Consensus        11 ~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~   90 (108)
T 2jre_A           11 FSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLR   90 (108)
T ss_dssp             CEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHH
T ss_pred             cEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3567788876 455899999953          25 799999999999999 9999999  9999999999999999998


Q ss_pred             c-cCcEEEEEeCC
Q psy6995         312 T-SSLVTVTVIPA  323 (342)
Q Consensus       312 t-s~~V~v~VipP  323 (342)
                      . ...|.|+|...
T Consensus        91 ~~g~~v~l~v~R~  103 (108)
T 2jre_A           91 NAGNPVRLLLIRR  103 (108)
T ss_dssp             HHCSEEEEEEEEC
T ss_pred             cCCCeEEEEEEeC
Confidence            5 44788888754

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=99.10  E-value=2.1e-10  Score=99.31  Aligned_cols=77  Identities=25%  Similarity=0.410  Sum_probs=68.6

Q ss_pred             CCceEEEeecCCCCCCCeEEcCC-----c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccCcEEE
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQPD-----G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTV  318 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~E-----G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~~V~v  318 (342)
                      .+.+++.|.|.+.++|||.+...     | +|..|.++|+|++|||++||+|  |||++|.+++|++++.+|+....|.|
T Consensus        83 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~v~l  162 (192)
T 3k1r_A           83 RKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRTEKTVSI  162 (192)
T ss_dssp             SSCEEEEEETTSTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTSSSEEEE
T ss_pred             CceEEEEEEeCCCCceeEEEEcccccCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcCCCeEEE
Confidence            45788999999778999999532     4 8999999999999999999999  99999999999999999998668888


Q ss_pred             EEeCC
Q psy6995         319 TVIPA  323 (342)
Q Consensus       319 ~VipP  323 (342)
                      +|...
T Consensus       163 ~v~r~  167 (192)
T 3k1r_A          163 KVRHI  167 (192)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88763

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.10  E-value=5.1e-10  Score=88.25  Aligned_cols=75  Identities=20%  Similarity=0.248  Sum_probs=64.8

Q ss_pred             CceEEEeecCCCCCCCeEEcC--------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP--------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-  314 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~--------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-  314 (342)
                      +..+++|.|.. ..|||.+..        .| +|..|.++++|++|| |++||+|  |||++|..++|++++.+++... 
T Consensus         8 ~~~~v~l~~~~-~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   86 (110)
T 1um1_A            8 YVFTVELERGP-SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGK   86 (110)
T ss_dssp             CEEEEEEECCT-TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCS
T ss_pred             cEEEEEEEECC-CccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            56778888865 689999943        35 699999999999999 9999999  9999999999999999998654 


Q ss_pred             cEEEEEeCC
Q psy6995         315 LVTVTVIPA  323 (342)
Q Consensus       315 ~V~v~VipP  323 (342)
                      .|.|+|...
T Consensus        87 ~v~l~v~R~   95 (110)
T 1um1_A           87 KMRFLVAKS   95 (110)
T ss_dssp             EEEEEEECC
T ss_pred             eEEEEEEeC
Confidence            788888764

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=2.9e-10  Score=91.32  Aligned_cols=75  Identities=28%  Similarity=0.509  Sum_probs=65.0

Q ss_pred             CceEEEeecCCCCCCCeEEcC---------C-c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP---------D-G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS  313 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~---------E-G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts  313 (342)
                      +.++++|.|.. ..|||.+..         + | +|++|.++++|++|| |++||+|  |||++|.+++|++++.+|+..
T Consensus        17 ~~~~v~l~r~~-~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~   95 (120)
T 2eno_A           17 TEEEINLTRGP-SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA   95 (120)
T ss_dssp             EEEEEEEECCS-SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHH
T ss_pred             ceEEEEEEECC-CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            46778899977 899999975         2 3 899999999999999 9999999  999999999999999999854


Q ss_pred             -CcEEEEEeCC
Q psy6995         314 -SLVTVTVIPA  323 (342)
Q Consensus       314 -~~V~v~VipP  323 (342)
                       ..|.|+|...
T Consensus        96 g~~v~l~v~R~  106 (120)
T 2eno_A           96 GYAVSLRVQHR  106 (120)
T ss_dssp             CSEEEEEEEEE
T ss_pred             CCeEEEEEEeC
Confidence             4688877543

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.09  E-value=4.1e-10  Score=88.26  Aligned_cols=76  Identities=25%  Similarity=0.336  Sum_probs=63.6

Q ss_pred             CCceEEEeecCCCCCCCeEEcC--------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQP--------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS  314 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~--------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~  314 (342)
                      .++.+++| + +...|||.+..        .| +|++|.++|+|++|| |++||+|  |||++|..++|++++.+++...
T Consensus        10 ~~~~~v~l-~-~~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g   87 (106)
T 3axa_A           10 PEIITVTL-K-KQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTS   87 (106)
T ss_dssp             CCEEEEEE-E-CSSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             ceEEEEEE-C-CCCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            35666777 4 34789999942        24 799999999999999 9999999  9999999999999999998644


Q ss_pred             -cEEEEEeCCC
Q psy6995         315 -LVTVTVIPAL  324 (342)
Q Consensus       315 -~V~v~VipP~  324 (342)
                       .|.|+|....
T Consensus        88 ~~v~l~v~R~~   98 (106)
T 3axa_A           88 SVVTLEVAKQG   98 (106)
T ss_dssp             SEEEEEEECCC
T ss_pred             CeEEEEEEeCC
Confidence             7899988653

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.09  E-value=5.2e-10  Score=91.56  Aligned_cols=81  Identities=22%  Similarity=0.316  Sum_probs=67.4

Q ss_pred             CCCCCceEEEeecCCCCCCCeEEcC--------------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHH
Q psy6995         244 TPGSPAQELTLKRNGLGQLGFHVQP--------------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQ  305 (342)
Q Consensus       244 T~Gcet~El~LrR~~~gqLGFhV~~--------------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq  305 (342)
                      |.-..++++++.|...+.|||.+.+              .| +|+.|.++|+|++|| |++||+|  |||++|.++++++
T Consensus        20 s~~~~p~~v~l~k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~   99 (123)
T 2iwq_A           20 FQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQ   99 (123)
T ss_dssp             ---CCCEEEEECCCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHH
T ss_pred             cccCCCEEEEEEecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence            4445678999999877899999842              24 899999999999999 9999999  9999999999999


Q ss_pred             HHHHHhccC-cEEEEEeCCC
Q psy6995         306 MVDLLKTSS-LVTVTVIPAL  324 (342)
Q Consensus       306 ~vdlLrts~-~V~v~VipP~  324 (342)
                      ++++|+... .|.|+|....
T Consensus       100 ~~~~l~~~~~~v~l~v~r~~  119 (123)
T 2iwq_A          100 AVEAIRKAGNPVVFMVQSII  119 (123)
T ss_dssp             HHHHHHHCCSSEEEEEECCC
T ss_pred             HHHHHHcCCCeEEEEEEECC
Confidence            999998544 7888887643

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.09  E-value=3.9e-10  Score=91.23  Aligned_cols=88  Identities=19%  Similarity=0.291  Sum_probs=72.4

Q ss_pred             HHHHHHhhhccCCCCCceEEEeecCCCCCCCeEEcCC------c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCC
Q psy6995         233 LMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPD------G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLS  302 (342)
Q Consensus       233 l~EIV~RL~~VT~Gcet~El~LrR~~~gqLGFhV~~E------G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~ls  302 (342)
                      -..+-+|+....  .+.+++.|.|.. ..|||.+...      | +|++|.++|+|++|| |++||+|  |||++|..++
T Consensus        12 ~~~~~~~~~~~~--~~~~~v~l~k~~-~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~   88 (124)
T 2daz_A           12 DQKIRQRYADLP--GELHIIELEKDK-NGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRS   88 (124)
T ss_dssp             HHHHHHHSTTSS--SEEEEEEEECCS-SCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSC
T ss_pred             hhhHHHhhccCC--CceEEEEEEeCC-CccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence            345566665553  467888898874 6899999642      4 799999999999999 9999999  9999999999


Q ss_pred             HHHHHHHHhccC-cEEEEEeCC
Q psy6995         303 HDQMVDLLKTSS-LVTVTVIPA  323 (342)
Q Consensus       303 Heq~vdlLrts~-~V~v~VipP  323 (342)
                      |++++.+|+... .|.|+|...
T Consensus        89 ~~~~~~~~~~~~~~v~l~v~R~  110 (124)
T 2daz_A           89 HQNASAIIKTAPSKVKLVFIRN  110 (124)
T ss_dssp             HHHHHHHHHHSCSEEEEEEEEC
T ss_pred             HHHHHHHHHcCCCeEEEEEEeC
Confidence            999999998654 788888764

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.09  E-value=2.3e-10  Score=88.14  Aligned_cols=77  Identities=21%  Similarity=0.310  Sum_probs=63.9

Q ss_pred             CCCCceEEEeecCCCCCCCeEEcC-----Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-Cc
Q psy6995         245 PGSPAQELTLKRNGLGQLGFHVQP-----DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SL  315 (342)
Q Consensus       245 ~Gcet~El~LrR~~~gqLGFhV~~-----EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~  315 (342)
                      .|..+..+.+  .+...|||.+..     .| +|++|.++++|++|||++||+|  |||++|.+++|++++++|+.. ..
T Consensus         3 sg~~~~~~~~--~~~~~lG~~l~~g~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   80 (94)
T 1vb7_A            3 SGSSGLTVDV--AGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASP   80 (94)
T ss_dssp             CCCCCEEEEE--CSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSS
T ss_pred             CccEEEEEEe--cCCCCccEEEecccCCCCCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc
Confidence            4555555555  455789999964     24 8899999999999999999999  999999999999999999865 57


Q ss_pred             EEEEEeCC
Q psy6995         316 VTVTVIPA  323 (342)
Q Consensus       316 V~v~VipP  323 (342)
                      |+|+|...
T Consensus        81 v~l~v~R~   88 (94)
T 1vb7_A           81 LRLQLDRS   88 (94)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEEC
Confidence            88888764

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.09  E-value=3.8e-10  Score=87.48  Aligned_cols=75  Identities=24%  Similarity=0.374  Sum_probs=64.6

Q ss_pred             CCceEEEeecCCCCCCCeEEcCC----c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-cEE
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQPD----G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVT  317 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~E----G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~  317 (342)
                      .+.++++|.|.+ .+|||.+...    | +|..|.++++|++|| |++||+|  |||++|...+|++++.+++... .|.
T Consensus        10 ~~~~~v~l~k~~-~glG~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   88 (104)
T 3i4w_A           10 REPRRIVIHRGS-TGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT   88 (104)
T ss_dssp             SSCEEEEEECBT-TBTSEEEEECC-CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEE
T ss_pred             CccEEEEEEeCC-CccCEEEECCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            467889999985 5799999642    4 799999999999999 9999999  9999999999999999998644 677


Q ss_pred             EEEeC
Q psy6995         318 VTVIP  322 (342)
Q Consensus       318 v~Vip  322 (342)
                      ++|..
T Consensus        89 l~v~r   93 (104)
T 3i4w_A           89 IIAQY   93 (104)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77754

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=3e-10  Score=87.50  Aligned_cols=75  Identities=17%  Similarity=0.181  Sum_probs=62.7

Q ss_pred             CceEEEeecCCCCCCCeEEcC-----Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP-----DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTV  318 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~-----EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v  318 (342)
                      .++.++|+++  ..|||.+..     .+ +|..|.++++|++|||++||+|  |||++|.+++|++++.+++... .|.|
T Consensus         8 ~~~~v~l~~~--~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l   85 (94)
T 2eeg_A            8 MPHSVTLRGP--SPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTL   85 (94)
T ss_dssp             CCEEEEECCS--SCCSCCEECCTTTTSCCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCEEE
T ss_pred             ceEEEEEeCC--CccCEEEECccCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            4566777444  589999964     23 8999999999999999999999  9999999999999999998644 6888


Q ss_pred             EEeCCC
Q psy6995         319 TVIPAL  324 (342)
Q Consensus       319 ~VipP~  324 (342)
                      +|....
T Consensus        86 ~v~R~g   91 (94)
T 2eeg_A           86 SVSSGP   91 (94)
T ss_dssp             EEECCS
T ss_pred             EEEeCC
Confidence            887654

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.09  E-value=4.5e-10  Score=88.69  Aligned_cols=78  Identities=26%  Similarity=0.412  Sum_probs=66.4

Q ss_pred             CCCceEEEeecCCCCCCCeEEcCC---c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-CcEE
Q psy6995         246 GSPAQELTLKRNGLGQLGFHVQPD---G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVT  317 (342)
Q Consensus       246 Gcet~El~LrR~~~gqLGFhV~~E---G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~  317 (342)
                      ..+.+++.|.|.+ ..|||.+...   | +|..|.++++|++|| |++||+|  |||++|..++|++++.+|+.. ..|.
T Consensus        13 ~~~~~~v~l~~~~-~~lG~~l~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~   91 (111)
T 2dlu_A           13 WGHVEEVELINDG-SGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVR   91 (111)
T ss_dssp             CSEEEEEEEECCS-SCCCEEEECCSSSSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCSEEE
T ss_pred             cCceEEEEEEeCC-CccCEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            3456888898876 5799999643   3 899999999999999 9999999  999999999999999999854 4788


Q ss_pred             EEEeCCC
Q psy6995         318 VTVIPAL  324 (342)
Q Consensus       318 v~VipP~  324 (342)
                      |+|....
T Consensus        92 l~v~R~~   98 (111)
T 2dlu_A           92 MLVARDP   98 (111)
T ss_dssp             EEEEESC
T ss_pred             EEEEeCC
Confidence            8887543

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.08  E-value=2e-10  Score=90.93  Aligned_cols=76  Identities=16%  Similarity=0.229  Sum_probs=65.5

Q ss_pred             CceEEEeecCCCCCCCeEEcC-----------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhc
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP-----------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKT  312 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~-----------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrt  312 (342)
                      +..++.|.|.. ..|||.+..           .| +|.+|.++|+|++|| |++||+|  |||++|..++|++++.+++.
T Consensus         4 ~~~~v~l~k~~-~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~   82 (113)
T 2g5m_B            4 ELFPVELEKDS-EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN   82 (113)
T ss_dssp             EEEEEECCCCS-SCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHH
T ss_pred             EEEEEEEEeCC-CCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            56778888865 789999976           13 899999999999999 9999999  99999999999999999985


Q ss_pred             c-CcEEEEEeCCC
Q psy6995         313 S-SLVTVTVIPAL  324 (342)
Q Consensus       313 s-~~V~v~VipP~  324 (342)
                      . ..|+|+|....
T Consensus        83 ~g~~v~l~v~R~~   95 (113)
T 2g5m_B           83 TKGRVRFMIGRER   95 (113)
T ss_dssp             SCSSCEEEEEECC
T ss_pred             CCCeEEEEEEeCC
Confidence            4 47889887654

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.08  E-value=6.8e-10  Score=85.66  Aligned_cols=66  Identities=21%  Similarity=0.395  Sum_probs=58.1

Q ss_pred             CceEEEeecCCCCCCCeEEcCC----c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD----G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS  314 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E----G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~  314 (342)
                      .++.+.+.|.. .+|||.+..+    | +|+.|.++++|++|||++||+|  |||++|.+++|+++.++|+...
T Consensus         9 ~~~~~~l~~~~-~g~G~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   81 (98)
T 2jxo_A            9 RPRLCTMKKGP-SGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG   81 (98)
T ss_dssp             CCEEEEEECTT-TCCCEEEECCCSSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred             CcEEEEEEeCC-CcccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            46777888875 5799999654    3 8999999999999999999999  9999999999999999998654

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.07  E-value=6e-10  Score=90.26  Aligned_cols=76  Identities=25%  Similarity=0.316  Sum_probs=65.2

Q ss_pred             CCceEEEeecCCCCCCCeEEcC-----Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc---C
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQP-----DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS---S  314 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~-----EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts---~  314 (342)
                      .+..++.|.|.. .+|||.+..     .| +|..|.++++|++|| |++||+|  |||+.|..++|++++++|+..   .
T Consensus        18 ~~~~~v~l~~~~-~glG~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~   96 (123)
T 1ueq_A           18 GTFLSTTLKKSN-MGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQ   96 (123)
T ss_dssp             SEEEEEEEECCT-TSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTC
T ss_pred             CcEEEEEEEeCC-CceeEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence            467788898874 579999973     13 899999999999999 9999999  999999999999999999873   3


Q ss_pred             cEEEEEeCC
Q psy6995         315 LVTVTVIPA  323 (342)
Q Consensus       315 ~V~v~VipP  323 (342)
                      .|+|+|...
T Consensus        97 ~v~l~v~R~  105 (123)
T 1ueq_A           97 SVNLVLCRG  105 (123)
T ss_dssp             EEEEEEEES
T ss_pred             eEEEEEEeC
Confidence            688888643

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.07  E-value=2.3e-10  Score=93.93  Aligned_cols=75  Identities=17%  Similarity=0.255  Sum_probs=64.6

Q ss_pred             CceEEEeecCCCCCCCeEEcC-------C-c-eEEEEcccchhhhh-CCCCCCEE--eecccccCCCHHHHHHHHhccC-
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP-------D-G-LVTEVEHMGLAYQE-GLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-  314 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~-------E-G-~Vt~VE~~g~Ae~A-GLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-  314 (342)
                      +.+++.|.|.. ++|||.+..       + + +|..|.++++|++| ||++||+|  |||++|..++|++++++|+.+. 
T Consensus        29 ~~~~v~l~k~~-~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~  107 (130)
T 1i16_A           29 TVCTVTLEKMS-AGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPD  107 (130)
T ss_dssp             EEEEEEEETTS-SSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCS
T ss_pred             cEEEEEEEcCC-CccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            56778888864 689999964       1 2 79999999999999 99999999  9999999999999999999764 


Q ss_pred             -cEEEEEeCC
Q psy6995         315 -LVTVTVIPA  323 (342)
Q Consensus       315 -~V~v~VipP  323 (342)
                       .|.|+|..+
T Consensus       108 ~~v~l~v~r~  117 (130)
T 1i16_A          108 GPVTIVIRRK  117 (130)
T ss_dssp             SEEEEEEEEE
T ss_pred             ceEEEEEEeC
Confidence             488888765

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.07  E-value=3.9e-10  Score=91.52  Aligned_cols=76  Identities=17%  Similarity=0.288  Sum_probs=67.1

Q ss_pred             CceEEEeecCCCCCCCeEEcCC--c--eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC---cEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD--G--LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS---LVT  317 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E--G--~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~---~V~  317 (342)
                      +++++.|.... ..|||.+.++  |  ||..+.++|+|++.| |++||+|  |||++|..++|+|++++|+...   .++
T Consensus         5 ~~k~V~l~K~~-~~LG~tI~~~g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~   83 (95)
T 3gge_A            5 IEKEVNVYKSE-DSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFT   83 (95)
T ss_dssp             EEEEEEEECCS-SCCCEEEECSSSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEE
T ss_pred             eEEEEEEEECC-CCceEEEEcCCCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEE
Confidence            46788888866 8999999854  3  899999999999987 8999999  9999999999999999999644   589


Q ss_pred             EEEeCCC
Q psy6995         318 VTVIPAL  324 (342)
Q Consensus       318 v~VipP~  324 (342)
                      |.++.|.
T Consensus        84 L~lv~p~   90 (95)
T 3gge_A           84 MKLIEPK   90 (95)
T ss_dssp             EEEEEEC
T ss_pred             EEEECcc
Confidence            9999884

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.07  E-value=7.9e-10  Score=87.16  Aligned_cols=75  Identities=27%  Similarity=0.456  Sum_probs=63.5

Q ss_pred             CceEEEeecCCCCCCCeEEc-----------CCc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc-
Q psy6995         248 PAQELTLKRNGLGQLGFHVQ-----------PDG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT-  312 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~-----------~EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt-  312 (342)
                      +...+.+.+. .+.|||.+.           ..| +|+.|.++++|++|||++||+|  |||+.|.+++|.+++.+++. 
T Consensus        15 ~~~~~~l~~~-~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~   93 (110)
T 1x5q_A           15 EELTLTILRQ-TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGA   93 (110)
T ss_dssp             EEEEEEEECS-SSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHSC
T ss_pred             ceEEEEEecC-CCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhCC
Confidence            3455667776 589999996           235 7999999999999999999999  99999999999999999985 


Q ss_pred             cCcEEEEEeCC
Q psy6995         313 SSLVTVTVIPA  323 (342)
Q Consensus       313 s~~V~v~VipP  323 (342)
                      ...|+|+|...
T Consensus        94 g~~v~l~v~R~  104 (110)
T 1x5q_A           94 GTAVQMRVWRE  104 (110)
T ss_dssp             CSEEEEEEEEC
T ss_pred             CCeEEEEEEEC
Confidence            44789988764

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.06  E-value=2e-09  Score=87.33  Aligned_cols=82  Identities=26%  Similarity=0.310  Sum_probs=67.2

Q ss_pred             hccCCCCCceEEEeecCCCCCCCeEEcC-----Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc
Q psy6995         241 RAATPGSPAQELTLKRNGLGQLGFHVQP-----DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT  312 (342)
Q Consensus       241 ~~VT~Gcet~El~LrR~~~gqLGFhV~~-----EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt  312 (342)
                      ++.-.| +.+.+.+.......|||.+..     .| +|..|.++++|++|||++||+|  |||++|.+++|++++..++.
T Consensus        14 ~v~R~g-~~~~v~v~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~~~~   92 (128)
T 1uf1_A           14 HLLQGG-DEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKS   92 (128)
T ss_dssp             CCCCCS-SEEEEEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTT
T ss_pred             EEEeCC-cEEEEEEEECCCCccCEEEECcccCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            333344 456666665544789999965     14 8999999999999999999999  99999999999999999998


Q ss_pred             cCcEEEEEeCC
Q psy6995         313 SSLVTVTVIPA  323 (342)
Q Consensus       313 s~~V~v~VipP  323 (342)
                      ...|.|+|..-
T Consensus        93 ~~~v~l~v~R~  103 (128)
T 1uf1_A           93 SRHLILTVKDV  103 (128)
T ss_dssp             CSEEEEEEECC
T ss_pred             CCeEEEEEEEC
Confidence            88899988753

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.05  E-value=6.6e-10  Score=85.55  Aligned_cols=75  Identities=19%  Similarity=0.390  Sum_probs=63.8

Q ss_pred             ceEEEeecCCCCCCCeEEcC------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-CcEE
Q psy6995         249 AQELTLKRNGLGQLGFHVQP------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVT  317 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~  317 (342)
                      .+.++|.|.. ..|||.+..      .| +|.+|.++++|++|| |++||+|  |||++|.+.+|++++.+++.. ..|.
T Consensus         5 ~~~v~l~~~~-~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   83 (98)
T 2opg_A            5 ETTIEISKGR-TGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVR   83 (98)
T ss_dssp             EEEEEEECBT-TBTCEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred             EEEEEEEECC-CcccEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            4677888874 679999963      24 799999999999999 9999999  999999999999999999854 4788


Q ss_pred             EEEeCCC
Q psy6995         318 VTVIPAL  324 (342)
Q Consensus       318 v~VipP~  324 (342)
                      ++|....
T Consensus        84 l~v~R~~   90 (98)
T 2opg_A           84 LTLYRDE   90 (98)
T ss_dssp             EEEEECS
T ss_pred             EEEEcCC
Confidence            8887643

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.05  E-value=4.5e-10  Score=97.52  Aligned_cols=77  Identities=16%  Similarity=0.223  Sum_probs=66.8

Q ss_pred             CCCCCceEEEeecCCCCCCCeEEcC-----------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHH
Q psy6995         244 TPGSPAQELTLKRNGLGQLGFHVQP-----------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVD  308 (342)
Q Consensus       244 T~Gcet~El~LrR~~~gqLGFhV~~-----------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vd  308 (342)
                      ....+..+++|.|.. .+|||.+..           .| +|..|.++|+|++|| ||+||+|  |||++|..++|++++.
T Consensus        76 ~~~~~~~~v~l~k~~-~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~  154 (170)
T 3egg_C           76 VERLELFPVELEKDS-EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAAS  154 (170)
T ss_dssp             HTTSEEEEEEEECBT-TBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHH
T ss_pred             cCCceEEEEEEEeCC-CeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            345677888899987 579999976           23 899999999999999 9999999  9999999999999999


Q ss_pred             HHhccC-cEEEEEe
Q psy6995         309 LLKTSS-LVTVTVI  321 (342)
Q Consensus       309 lLrts~-~V~v~Vi  321 (342)
                      +|+.+. .|+|+|.
T Consensus       155 ~l~~~g~~v~L~V~  168 (170)
T 3egg_C          155 VLRNTKGRVRFMIG  168 (170)
T ss_dssp             HHHHCCSEEEEEEE
T ss_pred             HHHcCCCEEEEEEE
Confidence            999644 6888775

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.04  E-value=5.9e-10  Score=93.41  Aligned_cols=77  Identities=29%  Similarity=0.462  Sum_probs=66.5

Q ss_pred             CCCceEEEeecCCCCCCCeEEcCC----------c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHh
Q psy6995         246 GSPAQELTLKRNGLGQLGFHVQPD----------G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLK  311 (342)
Q Consensus       246 Gcet~El~LrR~~~gqLGFhV~~E----------G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLr  311 (342)
                      -.+.++++|.|++ .+|||.+...          | +|++|.++++|++|| |++||+|  |||++|...+|.+++.+++
T Consensus         3 ~~~~~~v~l~~~~-~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~   81 (196)
T 3gsl_A            3 SMEYEEITLERGN-SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK   81 (196)
T ss_dssp             CEEEEEEEEECBT-TBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CcEEEEEEEEECC-CCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3578899999986 5599999642          4 899999999999999 9999999  9999999999999999998


Q ss_pred             cc-CcEEEEEeCC
Q psy6995         312 TS-SLVTVTVIPA  323 (342)
Q Consensus       312 ts-~~V~v~VipP  323 (342)
                      .. ..|+++|...
T Consensus        82 ~~g~~v~l~v~r~   94 (196)
T 3gsl_A           82 EAGSIVRLYVMRR   94 (196)
T ss_dssp             TSCSEEEEEEEEE
T ss_pred             hCCCcEEEEEEec
Confidence            64 4688888754

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.04  E-value=6.1e-10  Score=91.87  Aligned_cols=71  Identities=20%  Similarity=0.280  Sum_probs=60.8

Q ss_pred             EeecCCCCCCCeEEcC-------C-c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc---CcEE
Q psy6995         253 TLKRNGLGQLGFHVQP-------D-G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS---SLVT  317 (342)
Q Consensus       253 ~LrR~~~gqLGFhV~~-------E-G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts---~~V~  317 (342)
                      ++.|+....|||.+..       + | ||.+|.++|+|++|| |++||+|  |||++|..++|++++++|+.+   ..|.
T Consensus        41 ~i~k~~~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~  120 (131)
T 1wfg_A           41 SVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVE  120 (131)
T ss_dssp             CCCSCSCTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEE
T ss_pred             EEecCCCCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEE
Confidence            4445566899999943       1 3 799999999999999 9999999  999999999999999999865   4688


Q ss_pred             EEEeCC
Q psy6995         318 VTVIPA  323 (342)
Q Consensus       318 v~VipP  323 (342)
                      |+|..+
T Consensus       121 l~v~R~  126 (131)
T 1wfg_A          121 LVVSRS  126 (131)
T ss_dssp             EEEEEE
T ss_pred             EEEEcC
Confidence            888754

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.04  E-value=8.6e-10  Score=86.34  Aligned_cols=78  Identities=18%  Similarity=0.221  Sum_probs=66.7

Q ss_pred             CCceEEEeecCCCCCCCeEEcC-----------Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQP-----------DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT  312 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~-----------EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt  312 (342)
                      +++++++|.|....+|||.+..           .| +|.+|.++++|+ |||++||+|  |||++|.+.+|.+.+.+++.
T Consensus         6 ~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~~~~~~~~~~~   84 (107)
T 2h2b_A            6 WEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQQLRK   84 (107)
T ss_dssp             EEEEEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             ceeEEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCccHHHHHHHhhC
Confidence            4678899999877899999962           24 799999999999 999999999  99999999999999988874


Q ss_pred             -cCcEEEEEeCCCC
Q psy6995         313 -SSLVTVTVIPALS  325 (342)
Q Consensus       313 -s~~V~v~VipP~~  325 (342)
                       ...|.|+|.....
T Consensus        85 ~g~~v~l~v~R~~~   98 (107)
T 2h2b_A           85 SGKNAKITIRRKKG   98 (107)
T ss_dssp             CCSEEEEEEEEESC
T ss_pred             CCCEEEEEEEECCC
Confidence             4578888876543

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=99.04  E-value=7.6e-10  Score=87.76  Aligned_cols=76  Identities=25%  Similarity=0.446  Sum_probs=67.3

Q ss_pred             CceEEEeecCCCCCCCeEEcC-----Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccCcEEEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP-----DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTVT  319 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~-----EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~~V~v~  319 (342)
                      ..+++.+.+.+...|||.+..     .| +|+.|.++++|++|||++||+|  |||++|.+.+|++++.+|+....+.|+
T Consensus        15 ~~~~v~~~~~~~~~lG~~l~~~~~~~~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~v~l~   94 (114)
T 1x5n_A           15 KEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTIS   94 (114)
T ss_dssp             SSEEEEECCCSSCCCCEEEEECCSSSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHCSSEEEE
T ss_pred             CcEEEEEEEcCCCceeEEEeecCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCeEEEE
Confidence            467888888888899999963     24 8999999999999999999999  999999999999999999977788998


Q ss_pred             EeCC
Q psy6995         320 VIPA  323 (342)
Q Consensus       320 VipP  323 (342)
                      |...
T Consensus        95 v~r~   98 (114)
T 1x5n_A           95 IVAA   98 (114)
T ss_dssp             ECSS
T ss_pred             EEcC
Confidence            8764

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.04  E-value=6.4e-10  Score=84.75  Aligned_cols=72  Identities=24%  Similarity=0.267  Sum_probs=60.3

Q ss_pred             eEEEeecCCCCCCCeEEcCC-----c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEEEE
Q psy6995         250 QELTLKRNGLGQLGFHVQPD-----G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTV  320 (342)
Q Consensus       250 ~El~LrR~~~gqLGFhV~~E-----G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v~V  320 (342)
                      ..++++  +.+.|||.+...     | +|.+|.++++|++|||++||+|  |||++|.+.+|.++..+|+.. ..|.|++
T Consensus         5 ~~v~~~--~~~~~G~~l~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v   82 (91)
T 2pkt_A            5 QQIDLQ--GPGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTV   82 (91)
T ss_dssp             EEEEEE--SSSCCSEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEE
T ss_pred             EEEEEC--CCCCCCEEEEccCCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence            344454  347899999643     3 8999999999999999999999  999999999999999999863 3688888


Q ss_pred             eCC
Q psy6995         321 IPA  323 (342)
Q Consensus       321 ipP  323 (342)
                      ...
T Consensus        83 ~R~   85 (91)
T 2pkt_A           83 ARS   85 (91)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            754

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.04  E-value=4.7e-10  Score=87.19  Aligned_cols=62  Identities=29%  Similarity=0.389  Sum_probs=54.2

Q ss_pred             CCCCeEEc-----------------CCc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc--CcEE
Q psy6995         260 GQLGFHVQ-----------------PDG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS--SLVT  317 (342)
Q Consensus       260 gqLGFhV~-----------------~EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts--~~V~  317 (342)
                      ..|||.++                 ..| +|..|.++++|++|||++||+|  |||++|.+.+|++++.+|+..  ..|.
T Consensus        19 ~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~   98 (104)
T 3sfj_A           19 LILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVR   98 (104)
T ss_dssp             EECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEE
T ss_pred             CcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEE
Confidence            58999998                 224 7999999999999999999999  999999999999999999853  3677


Q ss_pred             EEEe
Q psy6995         318 VTVI  321 (342)
Q Consensus       318 v~Vi  321 (342)
                      |+|.
T Consensus        99 l~v~  102 (104)
T 3sfj_A           99 LLVT  102 (104)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7764

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=99.03  E-value=9.4e-10  Score=87.83  Aligned_cols=75  Identities=24%  Similarity=0.374  Sum_probs=65.0

Q ss_pred             CCceEEEeecCCCCCCCeEEcCC----c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-cEE
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQPD----G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVT  317 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~E----G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~  317 (342)
                      .+.++++|.|.. .+|||.+...    | +|..|.++++|++|| |++||+|  |||++|.+.+|.+++.+++... .|.
T Consensus        13 ~~~~~v~l~k~~-~glG~~l~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   91 (119)
T 1tp5_A           13 REPRRIVIHRGS-TGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT   91 (119)
T ss_dssp             CSCEEEEEECTT-SCCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEE
T ss_pred             CccEEEEEEECC-CCccEEEecCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            478899999977 4599999643    4 799999999999999 9999999  9999999999999999998544 688


Q ss_pred             EEEeC
Q psy6995         318 VTVIP  322 (342)
Q Consensus       318 v~Vip  322 (342)
                      |+|..
T Consensus        92 l~v~r   96 (119)
T 1tp5_A           92 IIAQY   96 (119)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88864

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.03  E-value=1.1e-09  Score=87.33  Aligned_cols=79  Identities=30%  Similarity=0.406  Sum_probs=67.4

Q ss_pred             CCCCceEEEeecCCCCCCCeEEcC----Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-CcE
Q psy6995         245 PGSPAQELTLKRNGLGQLGFHVQP----DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLV  316 (342)
Q Consensus       245 ~Gcet~El~LrR~~~gqLGFhV~~----EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V  316 (342)
                      ..-.+..+.+.+.....|||.+..    +| +|..|.++++|++|||++||+|  |||++|.+.+|++++++|+.. ..|
T Consensus        10 ~~ldp~~~~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v   89 (114)
T 2edz_A           10 STFNPRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSV   89 (114)
T ss_dssp             CCCCCEEEEEECCTTCCCSCEEECCTTCCSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSEE
T ss_pred             hcCCCEEEEEeCCCCCcccEEEEEecCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEE
Confidence            344577788888877899998853    34 8999999999999999999999  999999999999999999864 478


Q ss_pred             EEEEeCC
Q psy6995         317 TVTVIPA  323 (342)
Q Consensus       317 ~v~VipP  323 (342)
                      .|+|...
T Consensus        90 ~l~v~R~   96 (114)
T 2edz_A           90 TLLVLDG   96 (114)
T ss_dssp             EEEEECH
T ss_pred             EEEEEEC
Confidence            8888754

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=99.02  E-value=1.4e-09  Score=87.85  Aligned_cols=76  Identities=12%  Similarity=0.183  Sum_probs=65.9

Q ss_pred             CceEEEeecCCCCCCCeEEcCC------ceEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-CcEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD------GLVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVT  317 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E------G~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~  317 (342)
                      +.++++|.|...+.|||.+...      =+|.+|.++++|++|| |++||+|  |||++|...++++++++|+.. ..|.
T Consensus        24 ~~~~V~l~~~~~~~lG~~l~~~~~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~  103 (114)
T 2gzv_A           24 VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT  103 (114)
T ss_dssp             CCEEEEEECCTTSCCSEEEEECCC--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEEEECCCCcEeEEEEeCCCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            5788999999888899999632      2699999999999999 9999999  999999999999999999844 4677


Q ss_pred             EEEeCC
Q psy6995         318 VTVIPA  323 (342)
Q Consensus       318 v~VipP  323 (342)
                      |+|...
T Consensus       104 l~v~~~  109 (114)
T 2gzv_A          104 IHYNKL  109 (114)
T ss_dssp             EEEECC
T ss_pred             EEEEec
Confidence            777553

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.02  E-value=9e-10  Score=83.74  Aligned_cols=75  Identities=17%  Similarity=0.355  Sum_probs=62.4

Q ss_pred             CceEEEeecCCCCCCCeEEcCC---------c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD---------G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-  313 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E---------G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-  313 (342)
                      +..++.+.+.. ..|||.+...         | +|.+|.++++|++|| |++||+|  |||++|..++|++++.+|+.. 
T Consensus         4 ~~~~v~l~~~~-~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   82 (97)
T 2iwn_A            4 ETFDVELTKNV-QGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG   82 (97)
T ss_dssp             EEEEEEEECBT-TBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTCC
T ss_pred             EEEEEEEecCC-CCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            34566676654 5699999754         4 799999999999999 9999999  999999999999999999854 


Q ss_pred             CcEEEEEeCC
Q psy6995         314 SLVTVTVIPA  323 (342)
Q Consensus       314 ~~V~v~VipP  323 (342)
                      ..|.|+|..+
T Consensus        83 ~~v~l~v~r~   92 (97)
T 2iwn_A           83 QTVLLTLMRR   92 (97)
T ss_dssp             SEEEEEEEEE
T ss_pred             CeEEEEEEeC
Confidence            3688888653

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=99.02  E-value=7.5e-10  Score=84.99  Aligned_cols=72  Identities=28%  Similarity=0.431  Sum_probs=60.3

Q ss_pred             CceEEEeecCCCCCCCeEEcC-------------Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHh
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP-------------DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLK  311 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~-------------EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLr  311 (342)
                      ...++++.++.  .|||.+..             .| +|++|.++++|++ ||++||+|  |||++|.+++|++++.+++
T Consensus         3 ~~~~v~l~~~~--~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~   79 (95)
T 1mfg_A            3 MEIRVRVEKDP--ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLK   79 (95)
T ss_dssp             EEEEEEEECSS--SCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCBHHHHHHHHH
T ss_pred             eEEEEEECCCC--CCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCCHHHHHHHhh
Confidence            34566677655  79999963             24 6999999999999 99999999  9999999999999999998


Q ss_pred             cc-CcEEEEEeC
Q psy6995         312 TS-SLVTVTVIP  322 (342)
Q Consensus       312 ts-~~V~v~Vip  322 (342)
                      .. ..|.|+|..
T Consensus        80 ~~~~~v~l~v~R   91 (95)
T 1mfg_A           80 TFQNTVELIIVR   91 (95)
T ss_dssp             HCCSEEEEEEEE
T ss_pred             cCCCeEEEEEEe
Confidence            54 468888864

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.01  E-value=1.3e-09  Score=89.19  Aligned_cols=74  Identities=18%  Similarity=0.261  Sum_probs=63.3

Q ss_pred             CceEEEeecCCCCCCCeEEcCC------ceEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc---Cc
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD------GLVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS---SL  315 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E------G~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts---~~  315 (342)
                      +..+++|.|.. .+|||.+...      =+|..|.++|+|++|| |++||+|  |||++|..++|++++++|+..   ..
T Consensus        18 ~~~~v~l~~~~-~g~G~~i~g~~~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~   96 (129)
T 2kpk_A           18 KFIHTKLRKSS-RGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGAS   96 (129)
T ss_dssp             EEEEEEEEECS-SCCSEEEEEEEETTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEE
T ss_pred             cEEEEEEEECC-CcccEEEeCccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCe
Confidence            45677888854 6899999751      2899999999999999 9999999  999999999999999999865   35


Q ss_pred             EEEEEeC
Q psy6995         316 VTVTVIP  322 (342)
Q Consensus       316 V~v~Vip  322 (342)
                      |.|+|..
T Consensus        97 v~l~v~R  103 (129)
T 2kpk_A           97 VDLELCR  103 (129)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            8888864

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.01  E-value=5.6e-10  Score=87.27  Aligned_cols=74  Identities=20%  Similarity=0.276  Sum_probs=61.5

Q ss_pred             ceEEEeecCCCCCCCeEEcCCc--eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEEEEeCC
Q psy6995         249 AQELTLKRNGLGQLGFHVQPDG--LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTVIPA  323 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~EG--~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v~VipP  323 (342)
                      ...+.+.+.. .+|||.+..+.  +|..|.++++|++|||++||+|  |||++|..++|++++++|+.. ..|.|+|...
T Consensus        16 ~~~v~l~~~~-~g~G~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   94 (100)
T 1whd_A           16 KLQITIRRGK-DGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRV   94 (100)
T ss_dssp             EEEEEEECCS-SSSSCBCCCSSSCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHCSSEEEEEEEEC
T ss_pred             eEEEEEECCC-CeeeEEEeCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            3445566643 68999986553  8999999999999999999999  999999999999999999854 4688888654

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.01  E-value=7.1e-10  Score=88.70  Aligned_cols=75  Identities=19%  Similarity=0.264  Sum_probs=64.7

Q ss_pred             CceEEEeecCCCCCCCeEEcCC-----------c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD-----------G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS  313 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E-----------G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts  313 (342)
                      +.+++.|.|.....|||.+...           | +|++|.++++|+ |||++||+|  |||++|..++|++++.+|+..
T Consensus        14 ~~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~   92 (117)
T 2csj_A           14 EQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKS   92 (117)
T ss_dssp             EEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHS
T ss_pred             eEEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcCHHHHHHHHhcC
Confidence            5677888888768999999641           3 899999999997 999999999  999999999999999999854


Q ss_pred             C-cEEEEEeCC
Q psy6995         314 S-LVTVTVIPA  323 (342)
Q Consensus       314 ~-~V~v~VipP  323 (342)
                      . .|.|+|..+
T Consensus        93 ~~~v~l~v~R~  103 (117)
T 2csj_A           93 GKIAAIVVKRP  103 (117)
T ss_dssp             CSEEEEEEEEE
T ss_pred             CCeEEEEEEEC
Confidence            4 788888764

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.01  E-value=2.7e-10  Score=88.17  Aligned_cols=76  Identities=16%  Similarity=0.349  Sum_probs=63.3

Q ss_pred             CceEEEeecCCCCCCCeEEcC--C---c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhc-cCcEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP--D---G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKT-SSLVT  317 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~--E---G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrt-s~~V~  317 (342)
                      +...+++.|.. .+|||.+..  +   | +|.+|.++++|++|| |++||+|  |||++|..++|++++.+|+. ...|+
T Consensus        11 ~~~~v~l~~~~-~g~G~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~   89 (103)
T 1wfv_A           11 DYFTVDMEKGA-KGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVR   89 (103)
T ss_dssp             CCEECCEECCT-TSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEEC
T ss_pred             eEEEEEEecCC-CcCCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            45666777765 569999963  2   4 789999999999999 9999999  99999999999999999984 34788


Q ss_pred             EEEeCCC
Q psy6995         318 VTVIPAL  324 (342)
Q Consensus       318 v~VipP~  324 (342)
                      |+|....
T Consensus        90 l~v~R~~   96 (103)
T 1wfv_A           90 LLLKRGT   96 (103)
T ss_dssp             EEEECTT
T ss_pred             EEEEECC
Confidence            8887643

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=98.99  E-value=1e-09  Score=102.13  Aligned_cols=80  Identities=23%  Similarity=0.260  Sum_probs=69.5

Q ss_pred             CCceEEEeecCCCCCCCeEEcCC-----c-eEEEEcccchhhh-hCCCCCCEE--eecccccCCCHHHHHHHHhccC-cE
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQPD-----G-LVTEVEHMGLAYQ-EGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LV  316 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~E-----G-~Vt~VE~~g~Ae~-AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V  316 (342)
                      ++.+.++|.|...++|||.|...     | +|.+|.++|+|++ |||++||+|  |||++|..++|++++.+|+... .|
T Consensus        76 ~~~r~V~L~k~~~~glGf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~V  155 (263)
T 1z87_A           76 LQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEV  155 (263)
T ss_dssp             CSSEEECCCTTTTCCCCCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSCC
T ss_pred             CccEEEEEEeCCCCCEeEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeE
Confidence            36889999998778999999642     3 8999999999999 899999999  9999999999999999999654 78


Q ss_pred             EEEEeCCCCC
Q psy6995         317 TVTVIPALSD  326 (342)
Q Consensus       317 ~v~VipP~~d  326 (342)
                      +|+|....+.
T Consensus       156 ~L~V~R~~~~  165 (263)
T 1z87_A          156 VLEVKYMKEV  165 (263)
T ss_dssp             CEEEECCSSS
T ss_pred             EEEEEeCccc
Confidence            8888775443

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.99  E-value=1.3e-09  Score=87.17  Aligned_cols=75  Identities=24%  Similarity=0.313  Sum_probs=61.5

Q ss_pred             ceEEEeecCCCCCCCeEEcC------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-c-E
Q psy6995         249 AQELTLKRNGLGQLGFHVQP------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-L-V  316 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~-V  316 (342)
                      ...+.|.|.....|||.+..      .| +|..|.++++|++|| |++||+|  |||++|..++|++++.+|+... . +
T Consensus        16 ~~~v~l~~~~~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~   95 (119)
T 1x6d_A           16 IHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQ   95 (119)
T ss_dssp             EEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSE
T ss_pred             eEEEEEEeCCCCccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeE
Confidence            45556777777899999953      24 799999999999999 9999999  9999999999999999998654 3 4


Q ss_pred             EEEEeCC
Q psy6995         317 TVTVIPA  323 (342)
Q Consensus       317 ~v~VipP  323 (342)
                      .+++...
T Consensus        96 ~l~v~R~  102 (119)
T 1x6d_A           96 AVIVTRK  102 (119)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEcC
Confidence            4555543

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=98.99  E-value=1.1e-09  Score=85.39  Aligned_cols=75  Identities=27%  Similarity=0.426  Sum_probs=63.7

Q ss_pred             CCCceEEEeecCCCCCCCeEEcC-------------Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHH
Q psy6995         246 GSPAQELTLKRNGLGQLGFHVQP-------------DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDL  309 (342)
Q Consensus       246 Gcet~El~LrR~~~gqLGFhV~~-------------EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdl  309 (342)
                      -++..++++.++.  .|||.+..             .| +|++|.++++|++ ||++||+|  |||++|.+++|++++.+
T Consensus         9 ~~~~~~v~l~~~~--~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~   85 (103)
T 1n7t_A            9 AKQEIRVRVEKDP--ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSL   85 (103)
T ss_dssp             SCCCEEEEEECSS--CCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCCHHHHHHH
T ss_pred             ccEEEEEEEccCC--CccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            3567778888865  79999964             24 6999999999999 99999999  99999999999999999


Q ss_pred             Hhcc-CcEEEEEeCC
Q psy6995         310 LKTS-SLVTVTVIPA  323 (342)
Q Consensus       310 Lrts-~~V~v~VipP  323 (342)
                      ++.. ..|.|+|...
T Consensus        86 ~~~~g~~v~l~v~R~  100 (103)
T 1n7t_A           86 LKTFQNTVELIIVRE  100 (103)
T ss_dssp             HHHCCSEEEEEEECC
T ss_pred             hhcCCCeEEEEEEec
Confidence            9864 4688888754

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=98.98  E-value=1.8e-09  Score=85.54  Aligned_cols=72  Identities=32%  Similarity=0.472  Sum_probs=59.1

Q ss_pred             eecCCCCCCCeEEcC----------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-cEEE
Q psy6995         254 LKRNGLGQLGFHVQP----------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTV  318 (342)
Q Consensus       254 LrR~~~gqLGFhV~~----------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v  318 (342)
                      +..++.+.|||.+.+          .| +|.+|.++|+|++|| |++||+|  |||++|..++|++++.+|+... .|+|
T Consensus         7 ~~~~~~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l   86 (106)
T 4amh_A            7 LVPRGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYL   86 (106)
T ss_dssp             -----CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEE
T ss_pred             cCCCCCCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEE
Confidence            344566899999951          13 799999999999999 9999999  9999999999999999998654 7899


Q ss_pred             EEeCCCC
Q psy6995         319 TVIPALS  325 (342)
Q Consensus       319 ~VipP~~  325 (342)
                      +|..+..
T Consensus        87 ~v~R~~~   93 (106)
T 4amh_A           87 KVAKPGS   93 (106)
T ss_dssp             EEECCSS
T ss_pred             EEEeCCC
Confidence            9988654

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.97  E-value=1.2e-09  Score=85.34  Aligned_cols=74  Identities=19%  Similarity=0.272  Sum_probs=61.8

Q ss_pred             CceEEEeecCCCCCCCeEEcC-----Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP-----DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTV  318 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~-----EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v  318 (342)
                      ++.+++|.  +...|||.+..     .+ +|.+|.++++|++|||++||+|  |||++|.+.+|.+++.+++.. ..|.|
T Consensus         5 ~~~~v~l~--~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l   82 (103)
T 1wf7_A            5 SSGSVSLV--GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNM   82 (103)
T ss_dssp             CCEEEEEE--SSSCCSCCEEEETTTTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEE
T ss_pred             CEEEEEEe--CCCccCEEEeccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            35666676  44789999963     13 7999999999999999999999  999999999999999999854 46888


Q ss_pred             EEeCC
Q psy6995         319 TVIPA  323 (342)
Q Consensus       319 ~VipP  323 (342)
                      +|...
T Consensus        83 ~v~R~   87 (103)
T 1wf7_A           83 TLQRA   87 (103)
T ss_dssp             EECCC
T ss_pred             EEEeC
Confidence            88654

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=98.96  E-value=2.8e-09  Score=84.02  Aligned_cols=75  Identities=23%  Similarity=0.365  Sum_probs=64.2

Q ss_pred             ceEEEeecCCCCCCCeEEcCC----c-eEEEEcccchhhhhCC-CCCCEE--eecccccCCCHHHHHHHHhcc--CcEEE
Q psy6995         249 AQELTLKRNGLGQLGFHVQPD----G-LVTEVEHMGLAYQEGL-KQGCRL--ICKVAVSTLSHDQMVDLLKTS--SLVTV  318 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~E----G-~Vt~VE~~g~Ae~AGL-R~G~RL--Icg~sV~~lsHeq~vdlLrts--~~V~v  318 (342)
                      +.++.|.+...++|||.+..+    | +|.+|.++++|++||| ++||+|  |||+++.+++|+++.++|+..  ..+.+
T Consensus         2 ~~~v~l~~~~~~glG~~~~~~~~~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l   81 (112)
T 1qau_A            2 VISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVV   81 (112)
T ss_dssp             EEEEEEECBTTTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEE
T ss_pred             EEEEEEEcCCCCceeEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEE
Confidence            457788777678999999654    2 8999999999999998 999999  999999999999999999863  36888


Q ss_pred             EEeCC
Q psy6995         319 TVIPA  323 (342)
Q Consensus       319 ~VipP  323 (342)
                      ++...
T Consensus        82 ~v~R~   86 (112)
T 1qau_A           82 LILRG   86 (112)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            77654

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.96  E-value=2.6e-09  Score=86.33  Aligned_cols=73  Identities=19%  Similarity=0.272  Sum_probs=60.0

Q ss_pred             ceEEEeecCCCCCCCeEEcC-----C--ceEEEEcccchhhhh-CCCCCCEE--eecccccCCCHHHHHHHHhcc-----
Q psy6995         249 AQELTLKRNGLGQLGFHVQP-----D--GLVTEVEHMGLAYQE-GLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-----  313 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~-----E--G~Vt~VE~~g~Ae~A-GLR~G~RL--Icg~sV~~lsHeq~vdlLrts-----  313 (342)
                      .+.+.+..+  ++|||.+..     .  =+|..|.++|+|++| ||++||+|  |||++|..++|++++++|+..     
T Consensus        19 ~~~~~~~~~--~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g   96 (118)
T 1v6b_A           19 VRLLRIKKE--GSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGG   96 (118)
T ss_dssp             EEEEEEESC--SCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTC
T ss_pred             EEEEEECCC--CccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCC
Confidence            344444444  589999942     1  389999999999999 99999999  999999999999999999853     


Q ss_pred             CcEEEEEeCC
Q psy6995         314 SLVTVTVIPA  323 (342)
Q Consensus       314 ~~V~v~VipP  323 (342)
                      ..|+|+|+..
T Consensus        97 ~~v~l~v~r~  106 (118)
T 1v6b_A           97 DWIDLVVAVC  106 (118)
T ss_dssp             SEEEEEEECC
T ss_pred             CeEEEEEEeC
Confidence            4788988864

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=98.95  E-value=2.4e-09  Score=91.53  Aligned_cols=80  Identities=16%  Similarity=0.202  Sum_probs=65.7

Q ss_pred             ceEEEeecCCCCCCCeEEcC--Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEEe
Q psy6995         249 AQELTLKRNGLGQLGFHVQP--DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTVI  321 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~--EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~Vi  321 (342)
                      +.++.+.+.....|||.+..  .| +|.+|.++|+|++|| ||+||+|  |||++|...+|++++.+|+... .|.|+|.
T Consensus       114 ~~~v~l~~~~~~~lG~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~  193 (206)
T 3r0h_A          114 KFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVT  193 (206)
T ss_dssp             EEEEEEECCTTCCCCEEEEECSSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEE
T ss_pred             EEEEEEecCCCCccCeEEEcCCceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence            34445555555689999963  34 899999999999999 9999999  9999999999999999998644 7889998


Q ss_pred             CCCCCCC
Q psy6995         322 PALSDGT  328 (342)
Q Consensus       322 pP~~dg~  328 (342)
                      .|.+...
T Consensus       194 R~~~~~~  200 (206)
T 3r0h_A          194 RPKPTLR  200 (206)
T ss_dssp             EECCCCC
T ss_pred             eCCCCCC
Confidence            8766553

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=98.95  E-value=2.3e-09  Score=81.25  Aligned_cols=72  Identities=28%  Similarity=0.379  Sum_probs=57.5

Q ss_pred             CceEEEeecCCCCCCCeEEcCC----c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc---cCcEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD----G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT---SSLVT  317 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E----G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt---s~~V~  317 (342)
                      +.++++|.|.. .+|||.+...    | +|..| ++++|+ |||++||+|  |||++|.+.+|++++++|+.   ...|.
T Consensus         3 ~~~~v~l~k~~-~g~G~~~~~~~~~~~~~v~~v-~~spA~-aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~   79 (88)
T 3bpu_A            3 ELITVHIVKGP-MGFGFTIADSPGGGGQRVKQI-VDSPRS-RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVT   79 (88)
T ss_dssp             EEEEEEEECBT-TBSSCEEEECTTSSSEEEEEC-CC--CC-TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEE
T ss_pred             cEEEEEEEcCC-CceeEEEEecCCCCcEEEEEe-cCChhH-hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEE
Confidence            46788888865 7899999533    5 55555 899999 999999999  99999999999999999984   33688


Q ss_pred             EEEeC
Q psy6995         318 VTVIP  322 (342)
Q Consensus       318 v~Vip  322 (342)
                      |+|..
T Consensus        80 l~v~R   84 (88)
T 3bpu_A           80 LLVQR   84 (88)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            88764

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.95  E-value=1.6e-09  Score=85.97  Aligned_cols=75  Identities=20%  Similarity=0.356  Sum_probs=63.5

Q ss_pred             CceEEEeecCCCCCCCeEEcC------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-CcE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLV  316 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V  316 (342)
                      +.+++.|.+.. ..|||.+..      .| +|.+|.++++|++|| |++||+|  |||++|.+++|++++.+|+.. ..|
T Consensus        17 ~~~~v~l~~~~-~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v   95 (116)
T 2dm8_A           17 QEMIIEISKGR-SGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKV   95 (116)
T ss_dssp             SCEEEEEECCS-SCCCCCCBCCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCCSEE
T ss_pred             CEEEEEEEECC-CcccEEEeCCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            45777787764 689999963      24 789999999999999 9999999  999999999999999999854 478


Q ss_pred             EEEEeCC
Q psy6995         317 TVTVIPA  323 (342)
Q Consensus       317 ~v~VipP  323 (342)
                      +|+|...
T Consensus        96 ~l~v~R~  102 (116)
T 2dm8_A           96 RLVVYRD  102 (116)
T ss_dssp             EEEEECC
T ss_pred             EEEEEeC
Confidence            8888753

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.94  E-value=6.3e-10  Score=87.19  Aligned_cols=74  Identities=18%  Similarity=0.237  Sum_probs=60.6

Q ss_pred             eEEEeecCCCCCCCeEEcCC-----c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEEEE
Q psy6995         250 QELTLKRNGLGQLGFHVQPD-----G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTV  320 (342)
Q Consensus       250 ~El~LrR~~~gqLGFhV~~E-----G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v~V  320 (342)
                      +++.++  +...|||.+...     + +|.+|.++++|++|||++||+|  |||++|.+++|++++++|+.. ..|.|+|
T Consensus         7 ~~v~~~--~~~~lG~~l~~g~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v   84 (103)
T 1v5l_A            7 GNVVLP--GPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKI   84 (103)
T ss_dssp             BCCEEE--SSSCCSBCCEEETTTTEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEE
T ss_pred             EEEEEc--CCCCcCEEEeccccCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence            344443  446899999532     2 8899999999999999999999  999999999999999999864 4788888


Q ss_pred             eCCCC
Q psy6995         321 IPALS  325 (342)
Q Consensus       321 ipP~~  325 (342)
                      ....+
T Consensus        85 ~R~g~   89 (103)
T 1v5l_A           85 DRAET   89 (103)
T ss_dssp             CCCTT
T ss_pred             EECCe
Confidence            76543

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=98.47  E-value=9.3e-11  Score=94.77  Aligned_cols=73  Identities=19%  Similarity=0.309  Sum_probs=62.6

Q ss_pred             ceEEEeecCCCCCCCeEEcCC-----c-eEEEEcccchhhh-hCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEE
Q psy6995         249 AQELTLKRNGLGQLGFHVQPD-----G-LVTEVEHMGLAYQ-EGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTV  318 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~E-----G-~Vt~VE~~g~Ae~-AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v  318 (342)
                      .+++.|.|+...+|||.+...     | +|+.|.++|+|++ |||++||+|  |||++|..+++++++.+|+... .|+|
T Consensus        28 ~~~v~l~k~~~~glG~~l~~g~~~~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~l  107 (112)
T 2lob_A           28 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEF  107 (112)
Confidence            456778888778999999753     4 8999999999999 999999999  9999999999999999998543 5666


Q ss_pred             EEe
Q psy6995         319 TVI  321 (342)
Q Consensus       319 ~Vi  321 (342)
                      +|+
T Consensus       108 ~V~  110 (112)
T 2lob_A          108 EVV  110 (112)
Confidence            553

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.93  E-value=2e-09  Score=84.59  Aligned_cols=75  Identities=25%  Similarity=0.395  Sum_probs=64.7

Q ss_pred             CCceEEEeecCCCCCCCeEEcCC----c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-CcEE
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQPD----G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVT  317 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~E----G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~  317 (342)
                      .+++.++|.|+. ..|||.+...    | +|..|.++++|++|| |++||+|  |||++|..++|++++.+++.. ..|.
T Consensus        14 ~~~~~v~l~k~~-~glG~~l~~~~~~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~~~v~   92 (113)
T 1um7_A           14 REPRKIILHKGS-TGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVT   92 (113)
T ss_dssp             CSEEEEEEECCS-SCSSBCCBCCSTTCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCCSEEE
T ss_pred             CceEEEEEEECC-CcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEE
Confidence            367889999976 6799999543    3 689999999999999 9999999  999999999999999999854 4688


Q ss_pred             EEEeC
Q psy6995         318 VTVIP  322 (342)
Q Consensus       318 v~Vip  322 (342)
                      |+|..
T Consensus        93 l~v~r   97 (113)
T 1um7_A           93 IVAQY   97 (113)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            88864

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=2e-09  Score=84.06  Aligned_cols=75  Identities=20%  Similarity=0.262  Sum_probs=63.8

Q ss_pred             CceEEEeecCCCCCCCeEEcC-----Cc-eEEEEcccchhhhh-CCCCCCEE--eecccccCCCHHHHHHHHhcc-CcEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP-----DG-LVTEVEHMGLAYQE-GLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVT  317 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~-----EG-~Vt~VE~~g~Ae~A-GLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~  317 (342)
                      +.+++++.+.+...|||.+..     .+ +|.+|.++++|++| ||++||+|  |||++|.+. |++++.+++.. ..|.
T Consensus         9 ~~~~~~v~~~~~~~~G~~~~gg~~~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~~~v~   87 (100)
T 2edp_A            9 SFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSFRILK   87 (100)
T ss_dssp             CCEEEEEECCSCSCCCCCEEEEGGGTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTCCSSCE
T ss_pred             CcEEEEEEECCCCCcCEEEeccCCCCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhCCCeEE
Confidence            567777777766789999963     23 78999999999999 99999999  999999997 99999999864 4788


Q ss_pred             EEEeCC
Q psy6995         318 VTVIPA  323 (342)
Q Consensus       318 v~VipP  323 (342)
                      |+|...
T Consensus        88 l~v~R~   93 (100)
T 2edp_A           88 LIVRRR   93 (100)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            888765

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=98.90  E-value=3.8e-09  Score=86.73  Aligned_cols=73  Identities=21%  Similarity=0.281  Sum_probs=61.5

Q ss_pred             CceEEEeecCCCCCCCeEEcCC--c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc----cCcEEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD--G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT----SSLVTV  318 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E--G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt----s~~V~v  318 (342)
                      .+..+.|..+ ...+||+++.+  + +|.+|+++++|++|||++||+|  |||++|...+++++..+++.    ...|.|
T Consensus        17 ~~~~l~l~~~-~~g~G~~l~~~~~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~L   95 (101)
T 3qik_A           17 LAKRLLILPQ-EEDYGFDIEEKNKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRL   95 (101)
T ss_dssp             TEEEEEECCC-SSSSSEEEEEETTEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEE
T ss_pred             ecCeEEEEeC-CCcccEEEEccCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEE
Confidence            3556666665 47799999754  2 8999999999999999999999  99999999999999999986    346888


Q ss_pred             EEe
Q psy6995         319 TVI  321 (342)
Q Consensus       319 ~Vi  321 (342)
                      +|.
T Consensus        96 LV~   98 (101)
T 3qik_A           96 LVA   98 (101)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            775

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=98.90  E-value=6.8e-09  Score=88.74  Aligned_cols=76  Identities=24%  Similarity=0.217  Sum_probs=65.0

Q ss_pred             CceEEEeecCCCCCCCeEEcC-------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccC--CCHHHHHHHHhccC
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP-------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVST--LSHDQMVDLLKTSS  314 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~-------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~--lsHeq~vdlLrts~  314 (342)
                      +..++.|.|.+ .+|||.+..       +| +|.+|.++|+|++|| ||+||+|  |||++|.+  .+|++++.+|+...
T Consensus        18 ~~~~v~~~~~~-~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~   96 (206)
T 3r0h_A           18 KKILIELKVEK-KPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTY   96 (206)
T ss_dssp             SCEEEEEECTT-SCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHSCC
T ss_pred             CEEEEEEEeCC-CCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHhcC
Confidence            56778888865 899999953       24 799999999999998 9999999  99999999  99999999998643


Q ss_pred             -c-EEEEEeCCC
Q psy6995         315 -L-VTVTVIPAL  324 (342)
Q Consensus       315 -~-V~v~VipP~  324 (342)
                       . |+|+|....
T Consensus        97 ~~~v~l~v~R~~  108 (206)
T 3r0h_A           97 EKAVTLTVFRAD  108 (206)
T ss_dssp             SSEEEEEEECCS
T ss_pred             CCceEEEEEecc
Confidence             5 888887653

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.89  E-value=2.2e-08  Score=96.26  Aligned_cols=81  Identities=20%  Similarity=0.298  Sum_probs=68.4

Q ss_pred             cCCCCCceEEEeecCCCCCCCeEEcCC--c------eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHh
Q psy6995         243 ATPGSPAQELTLKRNGLGQLGFHVQPD--G------LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLK  311 (342)
Q Consensus       243 VT~Gcet~El~LrR~~~gqLGFhV~~E--G------~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLr  311 (342)
                      .+..-..+++.+.|.....|||.+..+  |      +|.+|.++|+|++|| |++||+|  |||++|...+|++++.+|+
T Consensus       199 ~~~~~~~~~V~i~k~~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~  278 (388)
T 3suz_A          199 FSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIK  278 (388)
T ss_dssp             TCCSSCCEEEEECCCSSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTT
T ss_pred             hcccccceEEEEECCCCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHH
Confidence            445556789999997657899999764  3      899999999999999 9999999  9999999999999999998


Q ss_pred             cc---CcEEEEEeCC
Q psy6995         312 TS---SLVTVTVIPA  323 (342)
Q Consensus       312 ts---~~V~v~VipP  323 (342)
                      ..   ..|+|+|.+.
T Consensus       279 ~~~~~~~v~l~v~r~  293 (388)
T 3suz_A          279 GLKNQTQVKLNIVSC  293 (388)
T ss_dssp             TCTTCSCEEEEEEEC
T ss_pred             hccCCCccccccccc
Confidence            64   2488887653

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=98.89  E-value=8e-09  Score=78.18  Aligned_cols=74  Identities=19%  Similarity=0.324  Sum_probs=62.1

Q ss_pred             ceEEEeecCCC-CCCCeEEcCCc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEEEEeC
Q psy6995         249 AQELTLKRNGL-GQLGFHVQPDG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTVIP  322 (342)
Q Consensus       249 t~El~LrR~~~-gqLGFhV~~EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v~Vip  322 (342)
                      +.++.+.++.. .+|||.+. .| +|.+|.++++|++|| |++||+|  |||++|..++++++.++|+.. ..+.+++..
T Consensus         3 ~~~v~~~~~~~~~~~g~~~~-~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r   81 (92)
T 3cyy_A            3 PTKVTLVKSAKNEEYGLRLA-SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQR   81 (92)
T ss_dssp             CEEEEEECSSTTSCCCEEEE-EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEEC
T ss_pred             cEEEEEEeCCCCCCCCEEEe-CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEe
Confidence            45667666544 79999987 55 799999999999999 9999999  999999999999999999854 467888865


Q ss_pred             C
Q psy6995         323 A  323 (342)
Q Consensus       323 P  323 (342)
                      .
T Consensus        82 ~   82 (92)
T 3cyy_A           82 D   82 (92)
T ss_dssp             -
T ss_pred             C
Confidence            3

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.88  E-value=8.1e-09  Score=80.66  Aligned_cols=74  Identities=26%  Similarity=0.393  Sum_probs=61.7

Q ss_pred             CCceEEEeecCCCCCCCeEEcCC--c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc---CcEEE
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQPD--G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS---SLVTV  318 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~E--G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts---~~V~v  318 (342)
                      .+...+.|.+.. .+|||.+.+.  | +|++|.+.  |++|||++||+|  |||++|.+++|++++++|+..   ..|.|
T Consensus         9 ~~~~~v~l~~~~-~g~G~~i~~~~~Gv~V~~v~~~--a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l   85 (96)
T 1ujv_A            9 AELMTLTIVKGA-QGFGFTIADSPTGQRVKQILDI--QGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSL   85 (96)
T ss_dssp             CCCEEEEEECCS-SSSSEEEEEETTEEEEEEESCG--GGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEE
T ss_pred             ceEEEEEEEeCC-CceeEEEEcCCCCEEEEEEecc--cccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEE
Confidence            356777787754 7899999643  4 69999983  899999999999  999999999999999999963   46888


Q ss_pred             EEeCC
Q psy6995         319 TVIPA  323 (342)
Q Consensus       319 ~VipP  323 (342)
                      +|...
T Consensus        86 ~v~R~   90 (96)
T 1ujv_A           86 IIHRG   90 (96)
T ss_dssp             EEECC
T ss_pred             EEEEC
Confidence            88764

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=98.88  E-value=8e-09  Score=83.18  Aligned_cols=73  Identities=21%  Similarity=0.344  Sum_probs=61.1

Q ss_pred             CceEEEeecCCCCCCCeEEcCC----c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC--cEEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD----G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS--LVTV  318 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E----G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~--~V~v  318 (342)
                      .++.+.|.|.. .+|||.+..+    | +|..|.++++|++|||++||+|  |||++|.+++++++.++|+...  .+.+
T Consensus         9 ~~r~v~l~~~~-~g~G~~l~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l   87 (128)
T 2kjd_A            9 RPRLCTMKKGP-SGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLL   87 (128)
T ss_dssp             CCEEEEEECCS-SSCCEEEEECSSSCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEE
T ss_pred             CcEEEEEecCC-CcccEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEE
Confidence            46777888876 5699999654    3 8999999999999999999999  9999999999999999998654  3445


Q ss_pred             EEe
Q psy6995         319 TVI  321 (342)
Q Consensus       319 ~Vi  321 (342)
                      ++.
T Consensus        88 ~v~   90 (128)
T 2kjd_A           88 VVD   90 (128)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            553

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=98.88  E-value=8.2e-09  Score=83.68  Aligned_cols=74  Identities=30%  Similarity=0.467  Sum_probs=60.8

Q ss_pred             ceEEEeecCCCCCCCeEEcCC--------c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc---
Q psy6995         249 AQELTLKRNGLGQLGFHVQPD--------G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS---  313 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~E--------G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts---  313 (342)
                      ...+.+.+. ...|||.+...        | +|.+|.++++|++|| |++||+|  |||++|..+++++++++|+..   
T Consensus        31 ~~~v~l~~~-~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g  109 (121)
T 2kom_A           31 RLNIQLKKG-TEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKME  109 (121)
T ss_dssp             EEEEEEECC-TTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSS
T ss_pred             EEEEEEEcC-CCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCC
Confidence            344445554 36799999643        2 899999999999999 9999999  999999999999999999863   


Q ss_pred             CcEEEEEeCC
Q psy6995         314 SLVTVTVIPA  323 (342)
Q Consensus       314 ~~V~v~VipP  323 (342)
                      ..|.|+|...
T Consensus       110 ~~v~l~v~R~  119 (121)
T 2kom_A          110 GTVSLLVFRQ  119 (121)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEEEeC
Confidence            4688888654

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=98.86  E-value=5.7e-09  Score=86.45  Aligned_cols=76  Identities=22%  Similarity=0.326  Sum_probs=63.6

Q ss_pred             CCceEEEeecCCCCCCCeEEcCC--c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC---cEEE
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQPD--G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS---LVTV  318 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~E--G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~---~V~v  318 (342)
                      -+.+++.|.|. ..+|||++.+.  | +|..|.+  +|+.||||+||+|  |||++|..++|+|++++|+...   .|+|
T Consensus        11 ~~~~~V~L~Kg-~~G~GFsI~~~~~g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L   87 (113)
T 3soe_A           11 GLLVTIPLIKG-PKGFGFAIADSPTGQKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPL   87 (113)
T ss_dssp             CEEEEEEEECB-TTBSSEEEEEETTEEEEEEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEE
T ss_pred             CCEEEEEEEEC-CCcccEEEeCCCCCcEEEEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEE
Confidence            45688899996 46899999642  3 7888877  5999999999999  9999999999999999999642   6899


Q ss_pred             EEeCCCC
Q psy6995         319 TVIPALS  325 (342)
Q Consensus       319 ~VipP~~  325 (342)
                      +|.....
T Consensus        88 ~V~R~g~   94 (113)
T 3soe_A           88 LILRGGP   94 (113)
T ss_dssp             EEEESSC
T ss_pred             EEEECCc
Confidence            9887554

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.86  E-value=1.1e-08  Score=81.56  Aligned_cols=75  Identities=17%  Similarity=0.295  Sum_probs=63.5

Q ss_pred             CceEEEeecCCCCCCCeEEcCC---c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc-cCcEEEEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD---G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT-SSLVTVTV  320 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E---G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt-s~~V~v~V  320 (342)
                      +++.+.+.+.. ..|||.+...   | +|.+|.++++|++|||++||+|  |||++|.+.+|.+.+.+++. ...|+|+|
T Consensus        19 ~~~~v~l~~~~-~~lG~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v   97 (117)
T 1uit_A           19 EPRHVKVQKGS-EPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILA   97 (117)
T ss_dssp             CCEEEEEECSS-CCCCEEEEECTTSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEEE
T ss_pred             CCEEEEEEeCC-CCccEEEEccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence            56788888865 7899999533   4 7999999999999999999999  99999999999999977764 44788888


Q ss_pred             eCC
Q psy6995         321 IPA  323 (342)
Q Consensus       321 ipP  323 (342)
                      ...
T Consensus        98 ~r~  100 (117)
T 1uit_A           98 QYN  100 (117)
T ss_dssp             CCC
T ss_pred             EEC
Confidence            754

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=98.85  E-value=8.1e-09  Score=86.46  Aligned_cols=75  Identities=25%  Similarity=0.413  Sum_probs=61.7

Q ss_pred             ceEEEeecCCCCCCCeEEcC----------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC
Q psy6995         249 AQELTLKRNGLGQLGFHVQP----------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS  314 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~----------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~  314 (342)
                      +.++.+.+.. ..|||.+..          .| +|++|.++|+|++|| ||+||+|  |||++|.+++|++++++|+...
T Consensus       101 ~~~v~l~~~~-~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~  179 (196)
T 3gsl_A          101 VMEIKLIKGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTY  179 (196)
T ss_dssp             EEEEEEEEBT-TBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCC
T ss_pred             cEEEEEecCC-CCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCC
Confidence            3445555544 489999952          23 899999999999999 9999999  9999999999999999999655


Q ss_pred             -cEEEEEeCCC
Q psy6995         315 -LVTVTVIPAL  324 (342)
Q Consensus       315 -~V~v~VipP~  324 (342)
                       .|.|+|..+.
T Consensus       180 ~~v~l~v~R~~  190 (196)
T 3gsl_A          180 DVVYLKVAKPS  190 (196)
T ss_dssp             EEEEEEEEEES
T ss_pred             CeEEEEEeCCC
Confidence             6888887654

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=98.84  E-value=6.5e-09  Score=86.80  Aligned_cols=77  Identities=25%  Similarity=0.305  Sum_probs=62.6

Q ss_pred             ceEEEeecCC---CCCCCeEEcC-----------------Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHH
Q psy6995         249 AQELTLKRNG---LGQLGFHVQP-----------------DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQ  305 (342)
Q Consensus       249 t~El~LrR~~---~gqLGFhV~~-----------------EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq  305 (342)
                      .+.+.|.+.+   .+.|||.+.+                 .| +|++|.++++|++|||++||+|  |||++|..++|++
T Consensus        24 ~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~  103 (139)
T 2vz5_A           24 VQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQ  103 (139)
T ss_dssp             EEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHH
T ss_pred             eEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCCHHH
Confidence            4556666643   3589999832                 34 8999999999999999999999  9999999999999


Q ss_pred             HHHHHhcc--CcEEEEEeCCCC
Q psy6995         306 MVDLLKTS--SLVTVTVIPALS  325 (342)
Q Consensus       306 ~vdlLrts--~~V~v~VipP~~  325 (342)
                      ++++|+..  ..|.|+|.....
T Consensus       104 ~~~~l~~~~g~~v~l~v~R~g~  125 (139)
T 2vz5_A          104 ARKRLTKRSEEVVRLLVTRQSL  125 (139)
T ss_dssp             HHHHHCCTTCSEEEEEEEECC-
T ss_pred             HHHHHHhCCCCEEEEEEEECCE
Confidence            99999863  368898887543

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.84  E-value=7e-09  Score=89.07  Aligned_cols=77  Identities=23%  Similarity=0.313  Sum_probs=67.3

Q ss_pred             CCceEEEeecCCCCCCCeEEcCC---------c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQPD---------G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS  313 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~E---------G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts  313 (342)
                      .++++++|.|....+|||.+...         | +|.+|.++++|++|| |++||+|  |||+.|..++|+++..+|+..
T Consensus         5 ~~~~~v~l~~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~   84 (196)
T 1p1d_A            5 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS   84 (196)
T ss_dssp             CEEEEEEEECBTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTC
T ss_pred             cEEEEEEEEeCCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            47889999998779999999753         2 699999999999999 9999999  999999999999999999864


Q ss_pred             ---CcEEEEEeCC
Q psy6995         314 ---SLVTVTVIPA  323 (342)
Q Consensus       314 ---~~V~v~VipP  323 (342)
                         ..|+|++...
T Consensus        85 ~~g~~v~l~v~R~   97 (196)
T 1p1d_A           85 SITSKVTLEIEFD   97 (196)
T ss_dssp             CSSSEEEEEEEEC
T ss_pred             CCCCeEEEEEEec
Confidence               3688887643

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=98.83  E-value=1.3e-08  Score=77.21  Aligned_cols=71  Identities=17%  Similarity=0.219  Sum_probs=57.3

Q ss_pred             EEeecC-C-CCCCCeEEcC--Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc---cCcEEEEEe
Q psy6995         252 LTLKRN-G-LGQLGFHVQP--DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT---SSLVTVTVI  321 (342)
Q Consensus       252 l~LrR~-~-~gqLGFhV~~--EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt---s~~V~v~Vi  321 (342)
                      +.+.+. + ...|||.+..  .| +|.+|.++++|++|||++||+|  |||++|...+++++.++|+.   ...|.|+|.
T Consensus         7 ~~~~~~~~~~~~lG~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~   86 (90)
T 2eaq_A            7 ISINQTPGKSLDFGFTIKWDIPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVR   86 (90)
T ss_dssp             EEEECCTTCSSCCSEEEEEETTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEE
T ss_pred             EEEEecCCCCCcccEEEEecCCCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEE
Confidence            344443 2 2589998853  34 7899999999999999999999  99999988899999999974   346888775


Q ss_pred             C
Q psy6995         322 P  322 (342)
Q Consensus       322 p  322 (342)
                      .
T Consensus        87 R   87 (90)
T 2eaq_A           87 R   87 (90)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.83  E-value=1.3e-08  Score=87.26  Aligned_cols=74  Identities=22%  Similarity=0.331  Sum_probs=64.1

Q ss_pred             ceEEEeecCCCCCCCeEEcCC-----c-eEEEEcccchhhhh-CCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEE
Q psy6995         249 AQELTLKRNGLGQLGFHVQPD-----G-LVTEVEHMGLAYQE-GLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTV  318 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~E-----G-~Vt~VE~~g~Ae~A-GLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v  318 (342)
                      .+.+.|.|...++|||.+...     | +|+.|.++++|++| ||++||+|  |||++|.+.+|++++.+|+... .|+|
T Consensus         8 ~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l   87 (200)
T 2qt5_A            8 STVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVL   87 (200)
T ss_dssp             EEEEEEECCTTCCCCEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEE
T ss_pred             CEEEEEEeCCCCCCCEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence            467788888789999999532     3 79999999999999 99999999  9999999999999999998544 6888


Q ss_pred             EEeC
Q psy6995         319 TVIP  322 (342)
Q Consensus       319 ~Vip  322 (342)
                      +|..
T Consensus        88 ~v~R   91 (200)
T 2qt5_A           88 EVEY   91 (200)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            8864

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=98.82  E-value=1.7e-08  Score=74.05  Aligned_cols=68  Identities=19%  Similarity=0.308  Sum_probs=57.7

Q ss_pred             eecCCCCCCCeEEcCCc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEEeC
Q psy6995         254 LKRNGLGQLGFHVQPDG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTVIP  322 (342)
Q Consensus       254 LrR~~~gqLGFhV~~EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~Vip  322 (342)
                      +......+|||.+. .| +|.+|.++++|++|| |++||+|  |||++|..++++++.++|+... .+.+++..
T Consensus         7 ~~~~~~~~~g~~~~-~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R   79 (81)
T 2rcz_A            7 VKSRKNEEYGLRLA-SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQR   79 (81)
T ss_dssp             ECCSTTCCCCEEEE-EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEC
T ss_pred             EECCCCCCCCEEEe-CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEEEEe
Confidence            44445579999987 55 799999999999999 9999999  9999999999999999998543 67777753

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.81  E-value=7.2e-09  Score=83.72  Aligned_cols=76  Identities=22%  Similarity=0.357  Sum_probs=65.0

Q ss_pred             CceEEEeecCCCCCCCeEEcCC----c-eEEEEcccchhhhhCC-CCCCEE--eecccccCCCHHHHHHHHhcc--CcEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD----G-LVTEVEHMGLAYQEGL-KQGCRL--ICKVAVSTLSHDQMVDLLKTS--SLVT  317 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E----G-~Vt~VE~~g~Ae~AGL-R~G~RL--Icg~sV~~lsHeq~vdlLrts--~~V~  317 (342)
                      +.+++.|.+....+|||.+...    | +|..|.++++|++||| ++||+|  |||++|.+++++++.++|+..  ..+.
T Consensus         8 ~~~~v~l~~~~~~glG~~~~~~~~~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~   87 (127)
T 1b8q_A            8 NVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHV   87 (127)
T ss_dssp             CSEEEEEECTTTSCCSCCEEECTTSSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEE
T ss_pred             ceEEEEEEeCCCCcEeEEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEE
Confidence            4678888887668999999643    3 7899999999999999 999999  999999999999999999863  3688


Q ss_pred             EEEeCC
Q psy6995         318 VTVIPA  323 (342)
Q Consensus       318 v~VipP  323 (342)
                      |++...
T Consensus        88 l~v~R~   93 (127)
T 1b8q_A           88 VLILRG   93 (127)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            877653

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.81  E-value=1.4e-08  Score=85.21  Aligned_cols=74  Identities=24%  Similarity=0.333  Sum_probs=64.1

Q ss_pred             CceEEEeecCCCCCCCeEEcCC--c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc--CcEEEEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD--G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS--SLVTVTV  320 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E--G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts--~~V~v~V  320 (342)
                      +.+++.|.|...+.|||.++..  | +|.+|.++++|++|||++||+|  |||++|.+.+|+....+++..  ..|+|++
T Consensus         4 ~~r~v~l~k~~~~~lG~~~~~~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~v   83 (166)
T 1w9e_A            4 DPREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTI   83 (166)
T ss_dssp             CCEEEEEECCTTSCCSEEEEEETTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEE
T ss_pred             CCEEEEEEeCCCCcEeEEEEeCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEE
Confidence            5788999998878999999753  4 8999999999999999999999  999999999998888888743  3677777


Q ss_pred             e
Q psy6995         321 I  321 (342)
Q Consensus       321 i  321 (342)
                      .
T Consensus        84 r   84 (166)
T 1w9e_A           84 R   84 (166)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=98.78  E-value=9.6e-09  Score=87.30  Aligned_cols=68  Identities=31%  Similarity=0.486  Sum_probs=57.9

Q ss_pred             CCCCeEEcC-------------Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEEEEeC
Q psy6995         260 GQLGFHVQP-------------DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTVIP  322 (342)
Q Consensus       260 gqLGFhV~~-------------EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v~Vip  322 (342)
                      ++|||.+.+             .| +|++|.++++|++ |||+||+|  |||++|..++|++++.+|+.. ..|.|+|..
T Consensus         2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r   80 (195)
T 2qbw_A            2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR   80 (195)
T ss_dssp             CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEE
T ss_pred             CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            468999974             24 7999999999999 99999999  999999999999999999864 478888887


Q ss_pred             CCCCCC
Q psy6995         323 ALSDGT  328 (342)
Q Consensus       323 P~~dg~  328 (342)
                      ...+|.
T Consensus        81 ~~~~G~   86 (195)
T 2qbw_A           81 EVGNGA   86 (195)
T ss_dssp             ECSSSC
T ss_pred             cCCCCC
Confidence            544443

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.78  E-value=8.3e-09  Score=86.20  Aligned_cols=75  Identities=17%  Similarity=0.237  Sum_probs=62.6

Q ss_pred             CceEEEeecCCCCCCCeEEcC--Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc---CcEEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP--DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS---SLVTV  318 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~--EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts---~~V~v  318 (342)
                      .+.++.|.+.. .+|||.+..  .+ +|..|.++|+|++|| |++||+|  |||++|...+|++++++|+..   ..|.|
T Consensus        27 ~~~~~~l~k~~-~glG~~i~~~~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l  105 (126)
T 1wif_A           27 KVIQTKLTVGN-LGLGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQI  105 (126)
T ss_dssp             CEEEEEEECCT-TCCCCCEEEETTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEE
T ss_pred             ceEEEEEecCC-ceEeEEEEcCCCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEE
Confidence            56667777654 689998853  33 689999999999999 9999999  999999999999999999862   36888


Q ss_pred             EEeCC
Q psy6995         319 TVIPA  323 (342)
Q Consensus       319 ~VipP  323 (342)
                      +|...
T Consensus       106 ~V~R~  110 (126)
T 1wif_A          106 KAYRG  110 (126)
T ss_dssp             EEESS
T ss_pred             EEEEC
Confidence            88754

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=98.76  E-value=2.6e-08  Score=81.55  Aligned_cols=63  Identities=22%  Similarity=0.328  Sum_probs=54.6

Q ss_pred             CCCCeEEcC---Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc---cCcEEEEEeC
Q psy6995         260 GQLGFHVQP---DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT---SSLVTVTVIP  322 (342)
Q Consensus       260 gqLGFhV~~---EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt---s~~V~v~Vip  322 (342)
                      ..|||.+..   .| +|..|.++++|++|||++||+|  |||++|.+.+|++++.+|+.   ...|.|+|..
T Consensus        39 ~~lG~~l~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R  110 (124)
T 3tsv_A           39 DSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQK  110 (124)
T ss_dssp             SCCCEEEEECTTSCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             CceeEEEecCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence            689999954   24 8999999999999999999999  99999999999999998873   2367887754

>1srq_A RAP1GAP, GTPase-activating protein 1; mixed alpha-beta, signaling protein; 2.90A {Homo sapiens} SCOP: e.55.1.1 PDB: 3brw_A*

Probab=98.70  E-value=7.7e-09  Score=99.84  Aligned_cols=40  Identities=35%  Similarity=0.516  Sum_probs=35.6

Q ss_pred             CCccccccccccCCCCceEEEEEEeeecccccccceeeEEEEEEec
Q psy6995          14 IPLEHQNWLGMDDNLGPVAISLKREKVEYTQESQQMYRYRLLIRTS   59 (342)
Q Consensus        14 ~~keHqN~fG~DE~LGPvavSi~rE~~e~~~~~~~~y~YRiiiRts   59 (342)
                      .+||||||+|+|++|||++|||++|+.+.      ++.||+|+||.
T Consensus        21 ~gk~H~n~~g~d~~lGpvilSi~~e~~~~------~~~~r~ilRt~   60 (341)
T 1srq_A           21 LGKEHFNYYSLDTALGHLVFSLKYDVIGD------QEHLRLLLRTK   60 (341)
T ss_dssp             TTSSCEEEEEEETTTEEEEEEEEEEEETT------EEEEEEEEECS
T ss_pred             CCCceeeEEEEcCCCCcEEEEEEEeccCC------ceeEEEEEEcC
Confidence            57899999999999999999999998872      36799999975

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.67  E-value=1.2e-07  Score=81.47  Aligned_cols=75  Identities=20%  Similarity=0.390  Sum_probs=62.5

Q ss_pred             ceEEEeecCCCCCCCeEEcC-------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhc-cCcE
Q psy6995         249 AQELTLKRNGLGQLGFHVQP-------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKT-SSLV  316 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~-------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrt-s~~V  316 (342)
                      ...+.+.+.....|||.+..       .| +|++|.++++|++|| |++||+|  |||++|.+++|+++.++|+. ...|
T Consensus       108 ~~~v~l~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v  187 (196)
T 1p1d_A          108 TFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLV  187 (196)
T ss_dssp             CEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCE
T ss_pred             cEEEEecCCCCCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEE
Confidence            34556666555789999953       34 899999999999999 9999999  99999999999999999986 4468


Q ss_pred             EEEEeCC
Q psy6995         317 TVTVIPA  323 (342)
Q Consensus       317 ~v~VipP  323 (342)
                      .|+|...
T Consensus       188 ~l~v~R~  194 (196)
T 1p1d_A          188 KLKIRKD  194 (196)
T ss_dssp             EEEEECC
T ss_pred             EEEEEeC
Confidence            8888654

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.66  E-value=2.4e-09  Score=102.88  Aligned_cols=73  Identities=30%  Similarity=0.492  Sum_probs=0.0

Q ss_pred             EEEeecC-CCCCCCeEEcCCceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEEeCCC
Q psy6995         251 ELTLKRN-GLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTVIPAL  324 (342)
Q Consensus       251 El~LrR~-~~gqLGFhV~~EG~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~VipP~  324 (342)
                      ++++.++ ..++|||.+. .|+|..|.++|+|++||||+||+|  |||++|...+|++++++|+.+. .|+|+|+|..
T Consensus       298 ~v~l~~~~~~~~lG~~i~-~g~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~v~L~V~p~~  374 (388)
T 3suz_A          298 TVLIKRPDLKYQLGFSVQ-NGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAA  374 (388)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             eeeEeecCCCCccceEEe-cCEEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEecc
Confidence            3444443 4478999996 689999999999999999999999  9999999999999999999655 6888888754

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.66  E-value=4.4e-08  Score=88.16  Aligned_cols=72  Identities=21%  Similarity=0.367  Sum_probs=61.2

Q ss_pred             CceEEEeecCCCCCCCeEEcCC----c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cE-EE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD----G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LV-TV  318 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E----G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V-~v  318 (342)
                      .++.++|.+.. ++|||.+..+    | +|..|.++++|++|||++||+|  |||+.|..++|++++++|+... .| .|
T Consensus         9 ~~r~v~l~k~~-~glG~~l~~~~~~~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~~v~~l   87 (216)
T 2krg_A            9 RPRLCTMKKGP-SGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLL   87 (216)
T ss_dssp             CCEEEEEECCS-SSSCEEECCCSSSCSCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEEEeCC-CCceEEEEecCCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEEE
Confidence            46778888866 5799999755    3 8999999999999999999999  9999999999999999998533 56 44


Q ss_pred             EE
Q psy6995         319 TV  320 (342)
Q Consensus       319 ~V  320 (342)
                      +|
T Consensus        88 ~V   89 (216)
T 2krg_A           88 VV   89 (216)
T ss_dssp             EC
T ss_pred             EE
Confidence            44

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.66  E-value=1.1e-07  Score=79.88  Aligned_cols=74  Identities=26%  Similarity=0.479  Sum_probs=62.2

Q ss_pred             CceEEEeecCCCCCCCeEEcCCceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHh-ccCcEEEEEeC
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLK-TSSLVTVTVIP  322 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~EG~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLr-ts~~V~v~Vip  322 (342)
                      +.+++++.++....|||.+. +|+|..|.++++|++|||++||+|  |||+++.+.+|+++.-.++ ....+.+.+.|
T Consensus        88 ~~~~v~l~~~~~~~lG~~~~-~g~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~l~v~~  164 (166)
T 1w9e_A           88 FERTITMHKDSTGHVGFIFK-NGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP  164 (166)
T ss_dssp             TCEEEEEECCTTSCCSEEEE-TTEEEEECTTSHHHHTTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEE
T ss_pred             CcEEEEEecCCCCcEeEEEe-CCEEEEEccCCHHHHcCCCCCCEEEEECCEECCCCChHHHHHHHhhCCCEEEEEEEE
Confidence            45667776655688999997 789999999999999999999999  9999999999999887765 55566776655

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.65  E-value=3.9e-08  Score=79.64  Aligned_cols=75  Identities=23%  Similarity=0.400  Sum_probs=61.4

Q ss_pred             CceEEEeecCCC-CCCCeEEcC-------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc--
Q psy6995         248 PAQELTLKRNGL-GQLGFHVQP-------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS--  313 (342)
Q Consensus       248 et~El~LrR~~~-gqLGFhV~~-------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts--  313 (342)
                      +..++.+.+.+. ..|||.+..       .| +|+.|.++++|++|| |++||+|  |||+.|.  +++++..+|+..  
T Consensus        19 ~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~--~~~~~~~~l~~~~g   96 (124)
T 1wh1_A           19 ELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSEEN   96 (124)
T ss_dssp             EECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHHHTCSSC
T ss_pred             eEEEEEEEecCCCCcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECC--CHHHHHHHHHhCCC
Confidence            455666777655 689999964       34 799999999999999 9999999  9999998  599999999864  


Q ss_pred             CcEEEEEeCCC
Q psy6995         314 SLVTVTVIPAL  324 (342)
Q Consensus       314 ~~V~v~VipP~  324 (342)
                      ..|.|+|....
T Consensus        97 ~~v~l~v~R~g  107 (124)
T 1wh1_A           97 KNFSLLIARPE  107 (124)
T ss_dssp             CSCCEEEEECS
T ss_pred             CEEEEEEEECC
Confidence            36888887653

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.61  E-value=8.2e-08  Score=92.87  Aligned_cols=73  Identities=19%  Similarity=0.320  Sum_probs=61.4

Q ss_pred             CceEEEeecCCCCCCCeEEcC---Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc--cC-cEEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP---DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT--SS-LVTV  318 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~---EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt--s~-~V~v  318 (342)
                      +.+.+.+.+.+  +|||.+..   .| +|..|.++|+|++|||++||+|  |||++|..++|++++.+|+.  .. .|+|
T Consensus         9 ~~~~v~~~k~~--~lG~~i~gg~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l   86 (391)
T 3tsz_A            9 SMKLVKFRKGD--SVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTI   86 (391)
T ss_dssp             CEEEEEEECCS--SCCEEEEEETTTEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEE
T ss_pred             CcEEEEeecCC--ceeEEEEecCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEE
Confidence            45556666664  69999964   35 7999999999999999999999  99999999999999999984  33 6888


Q ss_pred             EEeC
Q psy6995         319 TVIP  322 (342)
Q Consensus       319 ~Vip  322 (342)
                      +|..
T Consensus        87 ~v~r   90 (391)
T 3tsz_A           87 LAQK   90 (391)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            8864

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.60  E-value=7.5e-08  Score=98.96  Aligned_cols=76  Identities=28%  Similarity=0.455  Sum_probs=65.8

Q ss_pred             CCceEEEeecCCCCCCCeEEcC----------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhc
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQP----------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKT  312 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~----------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrt  312 (342)
                      ++.+++.|.|.. ++|||.+.+          .| +|..|.++|+|++|| |+.||+|  |||++|..++|++++.+|+.
T Consensus        58 ~~~~~v~l~k~~-~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~  136 (721)
T 2xkx_A           58 MEYEEITLERGN-SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE  136 (721)
T ss_pred             ceEEEEEEEeCC-CCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhc
Confidence            457888899987 699999964          23 899999999999999 9999999  99999999999999999985


Q ss_pred             cC-cEEEEEeCC
Q psy6995         313 SS-LVTVTVIPA  323 (342)
Q Consensus       313 s~-~V~v~VipP  323 (342)
                      +. .|+|+|...
T Consensus       137 ~g~~v~l~v~R~  148 (721)
T 2xkx_A          137 AGSIVRLYVMRR  148 (721)
T ss_pred             cccccceEEEec
Confidence            44 678887644

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.54  E-value=2.3e-07  Score=75.78  Aligned_cols=67  Identities=21%  Similarity=0.303  Sum_probs=56.0

Q ss_pred             CCCCCCCeEEc--C------Cc-eEEEEcc--cchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEEEEeC
Q psy6995         257 NGLGQLGFHVQ--P------DG-LVTEVEH--MGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTVIP  322 (342)
Q Consensus       257 ~~~gqLGFhV~--~------EG-~Vt~VE~--~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v~Vip  322 (342)
                      ...+.+||.|.  .      .| +|..|.+  +++|++|||++||+|  |||+.|.+.+|+++.++|+.. ..|.|+|..
T Consensus        24 ~~~g~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~g~~v~l~v~R  103 (118)
T 2yub_A           24 TTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEH  103 (118)
T ss_dssp             CSSSSCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCCSSCEEEEEEE
T ss_pred             ccCCCceEEEEeccccccCCCcEEEEEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHhCCCEEEEEEEE
Confidence            34467788763  2      24 7899999  999999999999999  999999999999999999864 478888875


Q ss_pred             C
Q psy6995         323 A  323 (342)
Q Consensus       323 P  323 (342)
                      .
T Consensus       104 ~  104 (118)
T 2yub_A          104 D  104 (118)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.49  E-value=3.8e-07  Score=78.09  Aligned_cols=73  Identities=26%  Similarity=0.367  Sum_probs=59.7

Q ss_pred             ceEEEeecCCCCCCCeEEcC---------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-
Q psy6995         249 AQELTLKRNGLGQLGFHVQP---------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-  314 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~---------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-  314 (342)
                      +.++++.+. ...|||.+..         .| +|+.|.++++|++|| |++||+|  |||++|..++|++++++|+... 
T Consensus       107 ~~~v~l~~~-~~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~  185 (200)
T 2qt5_A          107 TVEVTLHKE-GNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQ  185 (200)
T ss_dssp             EEEEEEECB-TTBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCS
T ss_pred             EEEEEEecC-CCCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            455556543 3679999752         13 899999999999999 9999999  9999999999999999999743 


Q ss_pred             cEEEEEeC
Q psy6995         315 LVTVTVIP  322 (342)
Q Consensus       315 ~V~v~Vip  322 (342)
                      .|.|+|..
T Consensus       186 ~v~l~v~R  193 (200)
T 2qt5_A          186 EATLLIEY  193 (200)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEE
Confidence            67777754

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.45  E-value=3e-07  Score=91.75  Aligned_cols=72  Identities=19%  Similarity=0.322  Sum_probs=61.6

Q ss_pred             ceEEEeecCCCCCCCeEEcC---Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc--c-CcEEEE
Q psy6995         249 AQELTLKRNGLGQLGFHVQP---DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT--S-SLVTVT  319 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~---EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt--s-~~V~v~  319 (342)
                      ++.+.|.+.  .+|||.+..   .| ||..|.++|+|++|||++||+|  |||++|..++|++++.+|+.  . ..|+|+
T Consensus         2 ~r~V~l~k~--~~lG~~i~gg~~~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~   79 (468)
T 3shw_A            2 MKLVKFRKG--DSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL   79 (468)
T ss_dssp             EEEEEEECC--SSCCEEEEEETTTEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEE
T ss_pred             ceEEEEecC--CccceEEEccCcCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEE
Confidence            455667774  789999932   45 7999999999999999999999  99999999999999999986  2 368888


Q ss_pred             EeC
Q psy6995         320 VIP  322 (342)
Q Consensus       320 Vip  322 (342)
                      |.+
T Consensus        80 V~r   82 (468)
T 3shw_A           80 AQK   82 (468)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            876

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.44  E-value=3e-07  Score=94.59  Aligned_cols=75  Identities=25%  Similarity=0.421  Sum_probs=62.1

Q ss_pred             ceEEEeecCCCCCCCeEEcC----------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-
Q psy6995         249 AQELTLKRNGLGQLGFHVQP----------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-  313 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~----------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-  313 (342)
                      +.+++|.+. ..+|||.+..          .| +|++|.++|+|++|| |++||+|  |||++|.+.+|++++.+|+.. 
T Consensus       155 ~~~v~l~k~-~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~  233 (721)
T 2xkx_A          155 VMEIKLIKG-PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTY  233 (721)
T ss_pred             ceeeeeeee-cCCCceeeccCCCccccCCCCceEEEEeCCCCchhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHcCC
Confidence            356667664 3569999853          24 899999999999999 9999999  999999999999999999854 


Q ss_pred             CcEEEEEeCCC
Q psy6995         314 SLVTVTVIPAL  324 (342)
Q Consensus       314 ~~V~v~VipP~  324 (342)
                      ..|.|+|..+.
T Consensus       234 ~~v~l~V~R~g  244 (721)
T 2xkx_A          234 DVVYLKVAKPS  244 (721)
T ss_pred             CeEEEEEEeCC
Confidence            46888887643

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=97.98  E-value=1.2e-05  Score=63.46  Aligned_cols=52  Identities=23%  Similarity=0.329  Sum_probs=44.5

Q ss_pred             Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccCcEEEEEeC
Q psy6995         269 DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTVTVIP  322 (342)
Q Consensus       269 EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~~V~v~Vip  322 (342)
                      .| +|++|.++++|++|||++||.|  |||+.+.  +.+++..+|+....+.|++..
T Consensus        35 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~--~~~~~~~~l~~~~~v~l~v~R   89 (113)
T 2pzd_A           35 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQ--NAEDVYEAVRTQSQLAVQIRR   89 (113)
T ss_dssp             SCEEEEEEBTTSHHHHHTCCTTCEEEEETTEECC--SHHHHHHHHHHCSSEEEEEEE
T ss_pred             CCeEEEEeCCCChHHHcCCCCCCEEEEECCEECC--CHHHHHHHHhCCCeEEEEEEE
Confidence            44 6899999999999999999999  9999997  478999999876677777654

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=97.94  E-value=1.6e-05  Score=75.71  Aligned_cols=64  Identities=25%  Similarity=0.286  Sum_probs=55.1

Q ss_pred             CCCCeEEcCC-----c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc--CcEEEEEeCC
Q psy6995         260 GQLGFHVQPD-----G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS--SLVTVTVIPA  323 (342)
Q Consensus       260 gqLGFhV~~E-----G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts--~~V~v~VipP  323 (342)
                      +++|+.+..+     | +|..|.++++|++|||++||+|  |||++|..++.+++..+|+..  ..|+|+|..+
T Consensus        85 ~giG~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~  158 (388)
T 1fc6_A           85 TGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAP  158 (388)
T ss_dssp             BBCSEEEEECTTCSSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEET
T ss_pred             EEEEEEEEEeecCCCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeC
Confidence            5789998632     3 8999999999999999999999  999999999999999999842  3688888764

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=97.88  E-value=2.7e-05  Score=61.45  Aligned_cols=52  Identities=17%  Similarity=0.237  Sum_probs=43.4

Q ss_pred             Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccCcEEEEEeC
Q psy6995         269 DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTVTVIP  322 (342)
Q Consensus       269 EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~~V~v~Vip  322 (342)
                      .| +|..|.++++|++|||++||+|  |||+.+.+  .+++...|+....+.|++..
T Consensus        35 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~--~~~~~~~l~~g~~v~l~v~R   89 (112)
T 2p3w_A           35 SGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVD--SSELQEAVLTESPLLLEVRR   89 (112)
T ss_dssp             SSEEEEEECTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHHHHCSSEEEEEEE
T ss_pred             CCeEEEEECCCChHHHCCCCCCCEEEEECCEECCC--HHHHHHHHhCCCeEEEEEEE
Confidence            45 6889999999999999999999  99999975  68888888765667777643

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=97.83  E-value=4.6e-05  Score=59.44  Aligned_cols=52  Identities=21%  Similarity=0.237  Sum_probs=43.8

Q ss_pred             eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc---CcEEEEEeCCC
Q psy6995         271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS---SLVTVTVIPAL  324 (342)
Q Consensus       271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts---~~V~v~VipP~  324 (342)
                      +|.+|.++++|++|||++||+|  |||+.|.+  .+++...|...   ..|.++|....
T Consensus         5 ~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~--~~d~~~~l~~~~~~~~v~l~v~R~g   61 (95)
T 3id1_A            5 VVGEIAANSIAAEAQIAPGTELKAVDGIETPD--WDAVRLQLVDKIGDESTTITVAPFG   61 (95)
T ss_dssp             BEEEECTTSHHHHTTCCTTCEEEEETTEECSS--HHHHHHHHHHTTTCSEEEEEEECTT
T ss_pred             EEEeeCCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHHhcCCCcEEEEEEECC
Confidence            7899999999999999999999  99999975  57888888643   36888887643

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=97.82  E-value=1.8e-05  Score=59.79  Aligned_cols=48  Identities=17%  Similarity=0.300  Sum_probs=40.0

Q ss_pred             eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc--CcEEEEE
Q psy6995         271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS--SLVTVTV  320 (342)
Q Consensus       271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts--~~V~v~V  320 (342)
                      +|.+|.++++|++|||++||+|  |||+.+.+  .+++..+|+..  ..+.+++
T Consensus         7 ~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~v~l~v   58 (91)
T 2zpm_A            7 VLENVQPNSAASXAGLQAGDRIVXVDGQPLTQ--WVTFVMLVRDNPGXSLALEI   58 (91)
T ss_dssp             BCSEECTTSHHHHTTCCTTCEEEEETTEECCC--HHHHHHHHHHCTTCCEEEEE
T ss_pred             EEEEECCCChHHhcCCCCCCEEEEECCeEcCC--HHHHHHHHhcCCCCeEEEEE
Confidence            6889999999999999999999  99999974  67888888753  2556555

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=97.77  E-value=6.4e-05  Score=73.65  Aligned_cols=50  Identities=14%  Similarity=0.230  Sum_probs=43.5

Q ss_pred             eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEEeC
Q psy6995         271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTVIP  322 (342)
Q Consensus       271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~Vip  322 (342)
                      +|++|.++++|++||||+||+|  |||++|.+  .+++.++|+... .+.|+|..
T Consensus       389 ~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~--~~~~~~~l~~~~~~v~l~v~R  441 (451)
T 3pv2_A          389 QVVGASENSAGWRAGIRPGDIIISANKKPVTD--VKSLQTIAQEKKKELLVQVLR  441 (451)
T ss_dssp             EEEEECTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHTTSSCSCEEEEEEE
T ss_pred             EEEEECCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHhcCCCeEEEEEEE
Confidence            8999999999999999999999  99999975  589999998643 67777754

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=97.63  E-value=7.1e-05  Score=58.46  Aligned_cols=53  Identities=23%  Similarity=0.245  Sum_probs=41.3

Q ss_pred             EcCCc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc---CcEEEEEe
Q psy6995         266 VQPDG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS---SLVTVTVI  321 (342)
Q Consensus       266 V~~EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts---~~V~v~Vi  321 (342)
                      ++.+| +|.+|.++++|++ ||++||+|  |||+.|.+  .+++.++|...   ..|.|++.
T Consensus         4 ~~~~Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~v~~--~~dl~~~l~~~~~g~~v~l~v~   62 (100)
T 3i18_A            4 VTYDGVYVMSVKDDVPAAD-VLHAGDLITEIDGNAFKS--SQEFIDYIHSKKVGDTVKINYK   62 (100)
T ss_dssp             CCCCCEEEEEECTTSGGGG-TCCTTCEEEEETTBCCSS--HHHHHHHHHTSCTTCEEEEEEE
T ss_pred             EeCCCEEEEEeCCCCchHH-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEE
Confidence            44567 7889999999995 99999999  99999975  47788888642   34665553

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=97.62  E-value=5.1e-05  Score=77.29  Aligned_cols=59  Identities=22%  Similarity=0.326  Sum_probs=46.6

Q ss_pred             CCCCeEEcCCc---eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc---cCcEEEEEe
Q psy6995         260 GQLGFHVQPDG---LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT---SSLVTVTVI  321 (342)
Q Consensus       260 gqLGFhV~~EG---~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt---s~~V~v~Vi  321 (342)
                      ..||+.+..++   +|++|.++|+|++|||++||.|  |||+.|.   .+++.++|+.   ...|+|+|.
T Consensus       485 ~~lG~~~~~~~~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v~---~~~l~~~l~~~~~g~~v~l~v~  551 (597)
T 4fgm_A          485 VNFGAKYKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQAT---EQSVKRILERYIPGDTVTIHAF  551 (597)
T ss_dssp             CCCSEEEEEETTEEEEEEECTTSHHHHHTCCTTCEEEEETTEECC---TTTHHHHHTTCCTTCEEEEEEE
T ss_pred             cccceEEeccCCeEEEEEeCCCChHHHCCCCCCCEEEEECCEECC---HHHHHHHHHhcCCCCEEEEEEE
Confidence            58999987665   8999999999999999999999  9999994   3556666643   335666553

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=97.59  E-value=0.00014  Score=63.74  Aligned_cols=77  Identities=21%  Similarity=0.192  Sum_probs=53.5

Q ss_pred             CCCCCeEEcC--------Cc-eEEEEcccchhhhhCCCC-CCEE--eecccccCCCHHHHHHHHhcc--CcEEEEEe---
Q psy6995         259 LGQLGFHVQP--------DG-LVTEVEHMGLAYQEGLKQ-GCRL--ICKVAVSTLSHDQMVDLLKTS--SLVTVTVI---  321 (342)
Q Consensus       259 ~gqLGFhV~~--------EG-~Vt~VE~~g~Ae~AGLR~-G~RL--Icg~sV~~lsHeq~vdlLrts--~~V~v~Vi---  321 (342)
                      .+.||+.++.        .| +|++|.++++|++|||++ ||+|  |||+ |  .+.+++.+.|+..  ..|.|+|.   
T Consensus        94 ~~~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v--~~~~~l~~~l~~~~g~~v~l~v~r~~  170 (209)
T 3rle_A           94 QGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTV-M--NESEDLFSLIETHEAKPLKLYVYNTD  170 (209)
T ss_dssp             SSSSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-C--CSSSCHHHHHHHTTTSCEEEEEEETT
T ss_pred             cCccceEEeecChhHccccceEEEEeCCCChHHHCCCCCCCCEEEECCCE-e--CCHHHHHHHHHhCCCCeEEEEEEECC
Confidence            4678998862        34 799999999999999999 9999  9997 4  4556777777642  23444432   


Q ss_pred             ---------CCCC--CCCCCcCCCcccc
Q psy6995         322 ---------PALS--DGTPRRYADLKMW  338 (342)
Q Consensus       322 ---------pP~~--dg~PRRgc~~~~~  338 (342)
                               .|..  .|..+-||...++
T Consensus       171 ~~~~~~v~l~p~~~~~g~g~lG~~~~~g  198 (209)
T 3rle_A          171 TDNCREVIITPNSAWGGEGSLGCGIGYG  198 (209)
T ss_dssp             TTEEEEEEECCCTTSSSSSSSCEEEECS
T ss_pred             ceEEEEEEEEecCCCCCceeeeEEecCc
Confidence                     2332  2456667766554

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=97.57  E-value=0.00019  Score=66.31  Aligned_cols=90  Identities=16%  Similarity=0.129  Sum_probs=61.5

Q ss_pred             hhhHHHHHHhhhc---cCCCCCceEEE-eecCCCCCCCeEEcCCc-eEEEEcccchhhhhCCCCCCEE--eecccccCCC
Q psy6995         230 RDELMEVVVRLRA---ATPGSPAQELT-LKRNGLGQLGFHVQPDG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLS  302 (342)
Q Consensus       230 ~edl~EIV~RL~~---VT~Gcet~El~-LrR~~~gqLGFhV~~EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~ls  302 (342)
                      .+.+++++..|..   +.++.--..+. +.-.-...||.... +| +|.+|.++++|++||||+||+|  |||+.|.+  
T Consensus       202 ~~~i~~~l~~l~~~g~~~~~~lGi~~~~~~~~~~~~~g~~~~-~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~--  278 (318)
T 1te0_A          202 FQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQGGGIDQL-QGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAIS--  278 (318)
T ss_dssp             HHHHHHHHHHHHHHSSCCCEECCEEEEECSCCCSSSSCSSSC-CCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCC--
T ss_pred             HHHHHHHHHHHHHcCCcccccceeEeeecchhHHHhccCCCC-CcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcCC--
Confidence            3678888888753   33332222222 11112244554433 45 7899999999999999999999  99999975  


Q ss_pred             HHHHHHHHhc---cCcEEEEEeC
Q psy6995         303 HDQMVDLLKT---SSLVTVTVIP  322 (342)
Q Consensus       303 Heq~vdlLrt---s~~V~v~Vip  322 (342)
                      .+++.++|+.   ...|+|++..
T Consensus       279 ~~~l~~~l~~~~~g~~v~l~v~R  301 (318)
T 1te0_A          279 ALETMDQVAEIRPGSVIPVVVMR  301 (318)
T ss_dssp             HHHHHHHHHTSCTTCEEEEEEES
T ss_pred             HHHHHHHHHhcCCCCEEEEEEEE
Confidence            5788888875   2368888875

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=97.51  E-value=0.0004  Score=67.48  Aligned_cols=50  Identities=20%  Similarity=0.299  Sum_probs=43.5

Q ss_pred             eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEEeC
Q psy6995         271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTVIP  322 (342)
Q Consensus       271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~Vip  322 (342)
                      +|.+|.++++|++||||+||+|  |||++|.  +.+++.++|+... .+.|+|..
T Consensus       366 ~V~~V~~~spA~~aGL~~GD~I~~vng~~v~--~~~~~~~~l~~~~~~v~l~v~R  418 (436)
T 4a8c_A          366 KIDEVVKGSPAAQAGLQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQIVR  418 (436)
T ss_pred             EEEEeCCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhCCCeEEEEEEE
Confidence            7999999999999999999999  9999997  5699999998644 57777754

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=97.50  E-value=6.9e-05  Score=57.01  Aligned_cols=50  Identities=18%  Similarity=0.167  Sum_probs=39.7

Q ss_pred             eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc---cCcEEEEEeC
Q psy6995         271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT---SSLVTVTVIP  322 (342)
Q Consensus       271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt---s~~V~v~Vip  322 (342)
                      .|..+.+.++|++|||++||.|  |||+.|.+  .+++.+++..   ...+.+++..
T Consensus        22 ~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~~--~~d~~~~~~~~~~g~~v~l~v~R   76 (87)
T 2i6v_A           22 RVSPGKDPVLFESIGLQDGDMAVALNGLDLTD--PNVMNTLFQSMNEMTEMSLTVER   76 (87)
T ss_dssp             EEEECSCHHHHHHTTCCTTCEEEEETTEETTC--HHHHHHHHHTGGGCSEEEEEEEE
T ss_pred             EEEeCCCCCHHHHCCCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEE
Confidence            3778888889999999999999  99999975  4666666653   3468888754

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=97.46  E-value=0.00013  Score=60.09  Aligned_cols=51  Identities=14%  Similarity=0.149  Sum_probs=42.3

Q ss_pred             Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc---CcEEEEEeC
Q psy6995         269 DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS---SLVTVTVIP  322 (342)
Q Consensus       269 EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts---~~V~v~Vip  322 (342)
                      .| +|.+|.++++|+ |||++||+|  |||+.|.+  .+++..+|+..   ..|+|++..
T Consensus        57 ~g~~V~~V~~~spA~-aGL~~GD~I~~inG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R  113 (134)
T 2l97_A           57 SGVIVRSVQSNMPAN-GHLEKYDVITKVDDKEIAS--STDLQSALYNHSIGDTIKITYYR  113 (134)
T ss_dssp             SCEEEEECSTTSGGG-TTSCSSCEEEEETTEECCC--HHHHHHHHHHSSTTCEEEEEEEE
T ss_pred             CCEEEEEECCCCchH-HCCCCCCEEEEECCEEcCC--HHHHHHHHHhCCCCCEEEEEEEE
Confidence            45 689999999999 999999999  99999976  46788888743   368888764

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=97.43  E-value=0.00022  Score=56.07  Aligned_cols=49  Identities=18%  Similarity=0.157  Sum_probs=37.7

Q ss_pred             EEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHh---ccCcEEEEEeC
Q psy6995         272 VTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLK---TSSLVTVTVIP  322 (342)
Q Consensus       272 Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLr---ts~~V~v~Vip  322 (342)
                      |..+.+.++|++|||++||+|  |||+.|.+..  ++.+++.   ....+.|++..
T Consensus        41 V~~~~pas~A~~aGl~~GDvI~~ing~~v~~~~--d~~~~~~~~~~g~~v~l~v~R   94 (105)
T 2i4s_A           41 VSPGKDPVLFESIGLQDGDMAVALNGLDLTDPN--VMNTLFQSMNEMTEMSLTVER   94 (105)
T ss_dssp             EEECSCTHHHHHHTCCTTCEEEEETTEETTSTT--HHHHHHHHHTTCSEEEEEEEE
T ss_pred             EecCCCCCHHHHcCCCCCCEEEEECCEECCCHH--HHHHHHHhcCCCCeEEEEEEE
Confidence            667777778899999999999  9999998764  4445554   34478888754

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=97.42  E-value=8e-05  Score=58.01  Aligned_cols=48  Identities=13%  Similarity=0.168  Sum_probs=39.9

Q ss_pred             eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc---CcEEEEEe
Q psy6995         271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS---SLVTVTVI  321 (342)
Q Consensus       271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts---~~V~v~Vi  321 (342)
                      +|..|.++++|++ ||++||+|  |||++|.+  .+++..+|+..   ..|.|++.
T Consensus         4 ~V~~V~~~spA~~-GL~~GD~I~~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~   56 (91)
T 2kjp_A            4 YASSVVENMPAKG-KIEVGDKIISADGKNYQS--AEKLIDYISSKKAGDKVTLKIE   56 (91)
T ss_dssp             SCCCCCCSSCCSS-CCCSSCEEEEETTBCCSS--HHHHHHHHSSCCSSCEECEEEE
T ss_pred             EEEEECCCChHHH-cCCCCCEEEEECCEECCC--HHHHHHHHHcCCCCCEEEEEEE
Confidence            5788999999999 99999999  99999975  57999999754   25666654

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=97.38  E-value=0.00016  Score=68.38  Aligned_cols=89  Identities=16%  Similarity=0.175  Sum_probs=59.4

Q ss_pred             hhHHHHHHhhhc---cCCCCCceEEE-eecCCCCCCCeEEcCCc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCH
Q psy6995         231 DELMEVVVRLRA---ATPGSPAQELT-LKRNGLGQLGFHVQPDG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSH  303 (342)
Q Consensus       231 edl~EIV~RL~~---VT~Gcet~El~-LrR~~~gqLGFhV~~EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsH  303 (342)
                      +.+++++..|.-   +.+|.--..+. +.-.-...||... ..| +|.+|.++++|++||||+||.|  |||+.|.  +.
T Consensus       222 ~~~~~~~~~l~~~g~v~~~~lGv~~~~~~~~~a~~~gl~~-~~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~v~--~~  298 (345)
T 3stj_A          222 NMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDV-QRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLN--SF  298 (345)
T ss_dssp             HHHHHHHHHHHHHSSCCCEECCEEEEECCHHHHHHTTCSC-CSSEEEEEECTTSHHHHHTCCTTCEECEETTEECS--CH
T ss_pred             HHHHHHHHHHHhcccccccccceeeEeecHHHHHhcCCCC-CceEEEEEeccCChHHHcCCCCCCEEEEECCEECC--CH
Confidence            667888888763   33333222221 1111112333332 245 8999999999999999999999  9999997  57


Q ss_pred             HHHHHHHhcc---CcEEEEEeC
Q psy6995         304 DQMVDLLKTS---SLVTVTVIP  322 (342)
Q Consensus       304 eq~vdlLrts---~~V~v~Vip  322 (342)
                      +++..+|+..   .+|+|+|..
T Consensus       299 ~~l~~~l~~~~~g~~v~l~v~R  320 (345)
T 3stj_A          299 AELRSRIATTEPGTKVKLGLLR  320 (345)
T ss_dssp             HHHHHHHHTSCTTCEEEEEEEE
T ss_pred             HHHHHHHHhcCCCCEEEEEEEE
Confidence            7888888742   368887765

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=97.37  E-value=0.00024  Score=62.23  Aligned_cols=51  Identities=20%  Similarity=0.148  Sum_probs=39.8

Q ss_pred             eEEEEcccchhhhhCCCCC-CEE--eecccccCCCHHHHHHHHhc--cCcEEEEEeC
Q psy6995         271 LVTEVEHMGLAYQEGLKQG-CRL--ICKVAVSTLSHDQMVDLLKT--SSLVTVTVIP  322 (342)
Q Consensus       271 ~Vt~VE~~g~Ae~AGLR~G-~RL--Icg~sV~~lsHeq~vdlLrt--s~~V~v~Vip  322 (342)
                      +|.+|.++++|++|||++| |+|  |||+.|.+.++-.. .+++.  ...|+|+|..
T Consensus        19 ~V~~V~~~SpA~~AGL~~G~D~I~~ing~~v~~~~~~~~-~~~~~~~g~~v~l~v~R   74 (209)
T 3rle_A           19 HVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLK-DLLKANVEKPVKMLIYS   74 (209)
T ss_dssp             EEEEECTTSHHHHTTCCTTTEEEEEETTEECCSSSSHHH-HHHHHTTTSCEEEEEEE
T ss_pred             EEEEECCCCHHHHCCCCcCCeEEEEECCEECcCHHHHHH-HHHhcCCCCEEEEEEEe
Confidence            8999999999999999999 999  99999998876443 33332  3356666654

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=97.35  E-value=0.00028  Score=65.12  Aligned_cols=81  Identities=21%  Similarity=0.321  Sum_probs=59.9

Q ss_pred             hhhHHHHHHhhhccCCCCCceEEEeecCCCCCCCeEEcC----Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCC
Q psy6995         230 RDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQP----DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLS  302 (342)
Q Consensus       230 ~edl~EIV~RL~~VT~Gcet~El~LrR~~~gqLGFhV~~----EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~ls  302 (342)
                      .+.+++++..|..  .|..         ....||+.++.    +| +|.+|.++++|++||||+||+|  |||+.|.+  
T Consensus       210 ~~~v~~~l~~l~~--~g~~---------~~~~lGi~~~~~~~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~--  276 (324)
T 1y8t_A          210 VDQAKRIADELIS--TGKA---------SHASLGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINS--  276 (324)
T ss_dssp             HHHHHHHHHHHHH--HSCC---------CCEECCEEEESCSSSSSEEEEEECTTSTTTTTTCCTTCEEEEETTEECCS--
T ss_pred             HHHHHHHHHHHHH--cCCc---------cccccceEeeeccCCCceEEEEECCCChHHHcCCCCCCEEEEECCEECCC--
Confidence            3667777777653  2221         12467777753    35 7899999999999999999999  99999975  


Q ss_pred             HHHHHHHHhc---cCcEEEEEeCC
Q psy6995         303 HDQMVDLLKT---SSLVTVTVIPA  323 (342)
Q Consensus       303 Heq~vdlLrt---s~~V~v~VipP  323 (342)
                      .+++..+|+.   ...|+|+|..+
T Consensus       277 ~~~l~~~l~~~~~g~~v~l~v~R~  300 (324)
T 1y8t_A          277 ADALVAAVRSKAPGATVALTFQDP  300 (324)
T ss_dssp             HHHHHHHHHTSCTTCEEEEEEECS
T ss_pred             HHHHHHHHHhcCCCCEEEEEEEEC
Confidence            4678888864   24688888764

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=97.34  E-value=0.00026  Score=65.84  Aligned_cols=52  Identities=23%  Similarity=0.326  Sum_probs=45.8

Q ss_pred             Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccCcEEEEEeC
Q psy6995         269 DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTVTVIP  322 (342)
Q Consensus       269 EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~~V~v~Vip  322 (342)
                      .| +|.+|+++++|++||||+||.|  |||+.|.+  .+++.+.|+....|.|++..
T Consensus       256 ~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~--~~~l~~~l~~~~~v~l~v~R  310 (325)
T 1lcy_A          256 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN--AEDVYEAVRTQSQLAVQIRR  310 (325)
T ss_dssp             SCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHHTTCSSEEEEEEE
T ss_pred             CCeEEEEeCcCChHHHCCCCCCCEEEEECCEEcCC--HHHHHHHHhCCCeEEEEEEE
Confidence            46 7899999999999999999999  99999974  68999999876788888765

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=97.33  E-value=6.9e-05  Score=73.39  Aligned_cols=59  Identities=22%  Similarity=0.307  Sum_probs=0.0

Q ss_pred             CCeEEc----CCc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEEeC
Q psy6995         262 LGFHVQ----PDG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTVIP  322 (342)
Q Consensus       262 LGFhV~----~EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~Vip  322 (342)
                      +||.++    ..| +|++|.++++|++||||+||+|  |||+.|.  +++++.++|+... .|.|+|..
T Consensus       372 ~G~~l~~~~~~~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~--~~~~l~~~l~~~~~~v~l~v~R  438 (448)
T 1ky9_A          372 EGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQR  438 (448)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             cceEeeccCCCCeEEEEEecCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHcCCCeEEEEEEE
Confidence            477774    234 7899999999999999999999  9999998  5789999998543 56666654

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=97.31  E-value=0.00012  Score=71.45  Aligned_cols=52  Identities=19%  Similarity=0.218  Sum_probs=43.4

Q ss_pred             eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEEEEeCCCC
Q psy6995         271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTVIPALS  325 (342)
Q Consensus       271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v~VipP~~  325 (342)
                      +|..|.++++|++|||++||+|  |||++|...+   +.++|+.. ..|+|++....+
T Consensus        93 ~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~~---~~~~l~~~g~~v~l~v~R~g~  147 (403)
T 3k50_A           93 LISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKV---ESELLQGSTRQLQIGVYKEVV  147 (403)
T ss_dssp             EEEEECTTSHHHHTTCCTTCEEEEETTBCBCTTT---GGGGTSCSCEEEEEEEEEEEC
T ss_pred             EEEEeCCCChHHHcCCCCCCEEEEECCEEccchh---HHHHhhCCCCEEEEEEEeCCc
Confidence            6999999999999999999999  9999999885   56677652 268888876644

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=97.30  E-value=0.00022  Score=69.93  Aligned_cols=91  Identities=20%  Similarity=0.204  Sum_probs=59.9

Q ss_pred             hhhHHHHHHhhhc---cCCCCCceEEE-eecCCCCCCCeEEcCCc-eEEEEcccchhhhhCCCCCCEE--eecccccCCC
Q psy6995         230 RDELMEVVVRLRA---ATPGSPAQELT-LKRNGLGQLGFHVQPDG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLS  302 (342)
Q Consensus       230 ~edl~EIV~RL~~---VT~Gcet~El~-LrR~~~gqLGFhV~~EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~ls  302 (342)
                      .+.+++++..|.-   |.+|.--.++. +...-...+|.....+| +|.+|.++++|++||||+||+|  |||+.|.+. 
T Consensus       239 ~~~~~~~~~~l~~~g~v~r~~lGv~~~~~~~~~a~~~gl~~~~~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~v~~~-  317 (451)
T 3pv2_A          239 INMVKDVAQQIIKFGSIHRGLMGIFVQHLTPELAQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQA-  317 (451)
T ss_dssp             HHHHHHHHHHHHHHSSCCCCBCCEEEEECCHHHHHHTTSCTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH-
T ss_pred             hHHHHHHHHHHHhcCCcccccccceEEeccHHHHHhcCCCcCCceEEEEecCCCChHHHcCCCCCCEEEEECCEEcCCH-
Confidence            3678888888863   44444333332 11111123333322145 8999999999999999999999  999999764 


Q ss_pred             HHHHHHHHhc---cCcEEEEEeC
Q psy6995         303 HDQMVDLLKT---SSLVTVTVIP  322 (342)
Q Consensus       303 Heq~vdlLrt---s~~V~v~Vip  322 (342)
                       +++...|..   ..+|+|+|..
T Consensus       318 -~~l~~~l~~~~~g~~v~l~V~R  339 (451)
T 3pv2_A          318 -TQVKTTISLLRVGSTVKIIVER  339 (451)
T ss_dssp             -HHHHHHHHTSCTTCEEEEEEEE
T ss_pred             -HHHHHHHHhcCCCCEEEEEEEE
Confidence             667777763   2367777764

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=97.28  E-value=0.00012  Score=56.75  Aligned_cols=48  Identities=29%  Similarity=0.288  Sum_probs=39.0

Q ss_pred             eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc---CcEEEEEe
Q psy6995         271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS---SLVTVTVI  321 (342)
Q Consensus       271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts---~~V~v~Vi  321 (342)
                      +|.+|.++++|++ ||++||+|  |||+++.+  .+++.++|+..   ..|.|++.
T Consensus         8 ~V~~V~~~spA~~-GL~~GD~Il~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~   60 (94)
T 2kl1_A            8 YVMSVLPNMPAAG-RLEAGDRIAAIDGQPINT--SEQIVSYVREKQAGDRVRVTFI   60 (94)
T ss_dssp             ECCCCCTTSTTBT-TBCTTCEEEEETTBCCCC--HHHHHHHHHHSCTTCCEEEEEE
T ss_pred             EEEEECCCChHHh-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEE
Confidence            6788999999999 99999999  99999975  57888888743   24555553

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=97.20  E-value=5.3e-05  Score=70.47  Aligned_cols=52  Identities=27%  Similarity=0.285  Sum_probs=0.0

Q ss_pred             Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccCcEEEEEeC
Q psy6995         269 DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTVTVIP  322 (342)
Q Consensus       269 EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~~V~v~Vip  322 (342)
                      .| +|.+|.++++|++|||++||+|  |||+.|.  +.+++.++|+....|+|+|..
T Consensus       254 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~--~~~~~~~~l~~~~~v~l~v~R  308 (332)
T 3num_A          254 SGAYIIEVIPDTPAEAGGLKENDVIISINGQSVV--SANDVSDVIKRESTLNMVVRR  308 (332)
T ss_dssp             ---------------------------------------------------------
T ss_pred             CceEEEEeccCCChHHcCCCCCCEEEEECCEECC--CHHHHHHHHhCCCeEEEEEEE
Confidence            45 7899999999999999999999  9999995  567788888765567777665

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=97.10  E-value=0.00051  Score=66.69  Aligned_cols=51  Identities=18%  Similarity=0.283  Sum_probs=40.4

Q ss_pred             Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc---cCcEEEEEe
Q psy6995         269 DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT---SSLVTVTVI  321 (342)
Q Consensus       269 EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt---s~~V~v~Vi  321 (342)
                      .| +|.+|.++++|++||||+||+|  |||+.|.+.  +++...|..   ...|+|+|.
T Consensus       263 ~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~v~  319 (436)
T 4a8c_A          263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLL  319 (436)
T ss_pred             cceEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEE
Confidence            45 8999999999999999999999  999999865  556666652   235666654

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=97.05  E-value=0.0012  Score=62.03  Aligned_cols=86  Identities=26%  Similarity=0.294  Sum_probs=58.2

Q ss_pred             hhhHHHHHHhhhc---cCCCCCceEEEeecCCCCCCCeEEcCCc-eEEEEcccchhhhhCCCC-----------CCEE--
Q psy6995         230 RDELMEVVVRLRA---ATPGSPAQELTLKRNGLGQLGFHVQPDG-LVTEVEHMGLAYQEGLKQ-----------GCRL--  292 (342)
Q Consensus       230 ~edl~EIV~RL~~---VT~Gcet~El~LrR~~~gqLGFhV~~EG-~Vt~VE~~g~Ae~AGLR~-----------G~RL--  292 (342)
                      .+.+++++..|.-   ++++.--..+.- -....++|.    +| +|.+|.++++|++||||+           ||.|  
T Consensus       214 ~~~~~~~~~~l~~~g~~~~~~lGi~~~~-~~~~~~~~~----~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~  288 (348)
T 3qo6_A          214 VDTVGGIVDQLVRFGKVTRPILGIKFAP-DQSVEQLGV----SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITS  288 (348)
T ss_dssp             HHHHHHHHHHHHHHSSCCCEECCCEECC-TTTTTTTTC----SSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECE
T ss_pred             ecchHHHHHHHHhCCceeeeecCcEEcc-chhhhhcCC----ceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEE
Confidence            3678888888753   333221111110 011123442    46 788999999999999999           9999  


Q ss_pred             eecccccCCCHHHHHHHHhc---cCcEEEEEeC
Q psy6995         293 ICKVAVSTLSHDQMVDLLKT---SSLVTVTVIP  322 (342)
Q Consensus       293 Icg~sV~~lsHeq~vdlLrt---s~~V~v~Vip  322 (342)
                      |||+.|.+.  +++.+.|..   ...|+|+|..
T Consensus       289 ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R  319 (348)
T 3qo6_A          289 VNGTKVSNG--SDLYRILDQCKVGDEVTVEVLR  319 (348)
T ss_dssp             ETTBCCSSS--HHHHHHHTTCCTTCEEEEEEEC
T ss_pred             ECCEEeCCH--HHHHHHHHhCCCcCEEEEEEEE
Confidence            999999865  788888853   2368888875

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=96.96  E-value=0.0011  Score=68.44  Aligned_cols=63  Identities=14%  Similarity=0.151  Sum_probs=51.8

Q ss_pred             CCCCCeEEcCC--c-eEEEEccc--------chhhhhC--CCCCCEE--eecccccCCCHHHHHHHHhcc--CcEEEEEe
Q psy6995         259 LGQLGFHVQPD--G-LVTEVEHM--------GLAYQEG--LKQGCRL--ICKVAVSTLSHDQMVDLLKTS--SLVTVTVI  321 (342)
Q Consensus       259 ~gqLGFhV~~E--G-~Vt~VE~~--------g~Ae~AG--LR~G~RL--Icg~sV~~lsHeq~vdlLrts--~~V~v~Vi  321 (342)
                      .+++|+.+..+  | +|..|.++        ++|++||  |+ ||+|  |||+++..+.  ++..+|+..  ..|+|+|.
T Consensus       736 ~~g~G~~~~~~~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~~v~l~v~  812 (1045)
T 1k32_A          736 SGRIACDFKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGTSARIRLS  812 (1045)
T ss_dssp             CCBCSEEEEEETTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTSEEEEEEE
T ss_pred             cceecEEEEEeCCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCCEEEEEEE
Confidence            36899888644  2 88899987        9999999  99 9999  9999999886  788899843  36888887


Q ss_pred             CCC
Q psy6995         322 PAL  324 (342)
Q Consensus       322 pP~  324 (342)
                      ++.
T Consensus       813 r~~  815 (1045)
T 1k32_A          813 GKG  815 (1045)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            753

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=96.70  E-value=0.0021  Score=52.89  Aligned_cols=47  Identities=21%  Similarity=0.208  Sum_probs=38.5

Q ss_pred             eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc---cCcEEEEE
Q psy6995         271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT---SSLVTVTV  320 (342)
Q Consensus       271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt---s~~V~v~V  320 (342)
                      +|..|.++++|++| |++||+|  |||+.|.+  -+++...|+.   ...|.|+|
T Consensus        28 ~V~~V~~~spA~~a-L~~GD~Il~InG~~v~~--~~dl~~~l~~~~~g~~v~l~V   79 (125)
T 2hga_A           28 QIDSVVPGSPASKV-LTPGLVIESINGMPTSN--LTTYSAALKTISVGEVINITT   79 (125)
T ss_dssp             EEEEECSSSGGGGT-SCTTCEEEEETTEECSS--HHHHHHHHTTCCTTCEEEEEE
T ss_pred             EEEEECCCChHHHh-cCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEE
Confidence            78899999999999 9999999  99999975  4778888863   23566655

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=96.32  E-value=0.0017  Score=63.49  Aligned_cols=52  Identities=21%  Similarity=0.302  Sum_probs=42.7

Q ss_pred             Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc---cCcEEEEEeC
Q psy6995         269 DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT---SSLVTVTVIP  322 (342)
Q Consensus       269 EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt---s~~V~v~Vip  322 (342)
                      .| +|.+|.++++|++||||+||+|  |||+.|.+.  +++..+|..   ..+|+|+|..
T Consensus       286 ~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R  343 (448)
T 1ky9_A          286 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLR  343 (448)
T ss_dssp             CSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEES
T ss_pred             CceEEEEeccCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEE
Confidence            35 7889999999999999999999  999999876  677777764   2367777754

>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}

Probab=95.82  E-value=0.042  Score=48.26  Aligned_cols=86  Identities=15%  Similarity=0.273  Sum_probs=62.8

Q ss_pred             ceeeEEEEEeccCCCCeeeeeeeeeccceEEEEEccCCcEEEeeeccceeeecccCCcEEEEeecCceEEEEecCCCCCC
Q psy6995         150 KGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGD  229 (342)
Q Consensus       150 ~GAl~W~V~v~D~s~~~~i~ClLGIS~e~lVLIe~~s~~VVFncpc~dVIGWt~s~~~LkIyY~rGE~i~l~~~e~~~~~  229 (342)
                      =|.-...|.-...+.....+++|||+.+-|.++++.++++++..|-.+|.-|.+..+.+.|-++......+.+...   +
T Consensus       125 yG~~~f~v~~~~~g~~~~~~~~LgI~~~GI~v~~~~tk~~l~~~~~~~I~~~~~~~~~f~I~~~~~~~~~~~~~T~---q  201 (222)
T 4f7g_A          125 YGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSFTLDFGDYQDGYYSVQTT---E  201 (222)
T ss_dssp             TTCEEEEEEEECTTSSCEEEEEEEECSSEEEEECTTTCCEEEEEEGGGCCEEEECSSEEEEECCTTSSSCEEEECS---C
T ss_pred             cCcEEEEEEEecCCCCCCCCEEEEEcCCcEEEEcCCCCceeEeccHHHeeeeccCCCEEEEEECCccceEEEEECC---c
Confidence            3445555544322333346899999999999999999999999999999999999999999886442222444443   5


Q ss_pred             hhhHHHHHH
Q psy6995         230 RDELMEVVV  238 (342)
Q Consensus       230 ~edl~EIV~  238 (342)
                      +++|.+++.
T Consensus       202 ~~~I~~Li~  210 (222)
T 4f7g_A          202 GEQIAQLIA  210 (222)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            688877765

>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B

Probab=95.58  E-value=0.067  Score=45.66  Aligned_cols=86  Identities=15%  Similarity=0.273  Sum_probs=62.3

Q ss_pred             ceeeEEEEEeccCCCCeeeeeeeeeccceEEEEEccCCcEEEeeeccceeeecccCCcEEEEeecCceEEEEecCCCCCC
Q psy6995         150 KGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLYHHQGEVTRIHMREGGGGD  229 (342)
Q Consensus       150 ~GAl~W~V~v~D~s~~~~i~ClLGIS~e~lVLIe~~s~~VVFncpc~dVIGWt~s~~~LkIyY~rGE~i~l~~~e~~~~~  229 (342)
                      =|+-...|.-.+.+.....+++|||++.-|.++++.++.+++..+-.+|..|.+..+.+.|-++.-....+.+...   +
T Consensus       114 yG~~~f~v~~~~~g~~~~~~~~Lgi~~~Gi~~~~~~~~~~l~~~~~~~I~~~~~~~~~f~i~~~~~~~~~~~~~t~---~  190 (206)
T 1mix_A          114 YGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSFTLDFGDYQDGYYSVQTT---E  190 (206)
T ss_dssp             TTCEEEEEEECCSSCSSCEEEEEEECSSEEEEEETTTCCEEEEEEGGGCCEEEECSSEEEEECGGGSSSCEEEECS---C
T ss_pred             cCceEEEEEEccCCCCCcCcEEEEEcccceEEeCCCCCceeeeeehhHeeecccCCCEEEEEeCcccceEEEEECC---c
Confidence            3555556655433333346899999999999999999999999999999999999888888877543223333332   4


Q ss_pred             hhhHHHHHH
Q psy6995         230 RDELMEVVV  238 (342)
Q Consensus       230 ~edl~EIV~  238 (342)
                      .+++..++.
T Consensus       191 ~~~i~~Li~  199 (206)
T 1mix_A          191 GEQIAQLIA  199 (206)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            577766664

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=94.07  E-value=0.21  Score=46.95  Aligned_cols=84  Identities=15%  Similarity=0.290  Sum_probs=63.7

Q ss_pred             ceeeEEEEEeccCCCCeeeeeeeeeccceEEEEEccCCcEEEeeeccceeeecccCCcEEEEeecC--ceEEEEecCCCC
Q psy6995         150 KGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLYHHQG--EVTRIHMREGGG  227 (342)
Q Consensus       150 ~GAl~W~V~v~D~s~~~~i~ClLGIS~e~lVLIe~~s~~VVFncpc~dVIGWt~s~~~LkIyY~rG--E~i~l~~~e~~~  227 (342)
                      =|.-...|.-...+.+...+++|||+.+-|.++++.++.+++..|-.+|.-|.+..+.+.|-++.-  ..+++.+.    
T Consensus       279 yG~~~f~vk~~~~g~~~~~~~~LgI~~~GI~v~~~~~k~~l~~~~~~~I~~~~~~~~~f~I~~~~~~~~~~~~~T~----  354 (371)
T 3ivf_A          279 YGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSFTLDFGDYQDGYYSVQTT----  354 (371)
T ss_dssp             TTCEEEEEEEECTTSSCEEEEEEEECSSEEEEEETTTCCEEEEEEGGGCCEEEEETTEEEEECGGGSSSCEEEECS----
T ss_pred             cCcEEEEEEEeccCCCCCccEEEEEcCCcEEEEcCCCCceEEeeehhheeeeecCCCEEEEEECCccCcEEEEECC----
Confidence            355566664333333444689999999999999999999999999999999999999999988743  24444443    


Q ss_pred             CChhhHHHHHH
Q psy6995         228 GDRDELMEVVV  238 (342)
Q Consensus       228 ~~~edl~EIV~  238 (342)
                       +++++.+++.
T Consensus       355 -~~~~I~~Li~  364 (371)
T 3ivf_A          355 -EGEQIAQLIA  364 (371)
T ss_dssp             -CHHHHHHHHH
T ss_pred             -hHHHHHHHHH
Confidence             4588887765

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=93.28  E-value=0.073  Score=54.15  Aligned_cols=52  Identities=21%  Similarity=0.275  Sum_probs=37.6

Q ss_pred             Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCC-----------HHHHHHHHhccCcEEEEEe
Q psy6995         269 DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLS-----------HDQMVDLLKTSSLVTVTVI  321 (342)
Q Consensus       269 EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~ls-----------Heq~vdlLrts~~V~v~Vi  321 (342)
                      .| +|++|+++++|++| ||+||.|  |||+.|.+..           ...++...+-..+|+|+|+
T Consensus       277 ~Gv~V~~V~~~spA~~a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~  342 (539)
T 4fln_A          277 EGVLVRRVEPTSDASKV-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGII  342 (539)
T ss_dssp             BCEEEEEECTTSGGGGT-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEE
T ss_pred             CceeeecccCCChHHhC-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEE
Confidence            35 89999999999987 9999999  9999997643           2334444333445666554

>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A

Probab=90.82  E-value=1.6  Score=40.28  Aligned_cols=86  Identities=8%  Similarity=0.232  Sum_probs=58.5

Q ss_pred             cceeeEEEEEec-cCC--CCeeeeeeeeeccceEEEEEccCCcEEEeeeccceeeeccc--CCcEEEEeec-CceEEEEe
Q psy6995         149 QKGAICWQVSLE-DSK--TGSLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATS--TNSLRLYHHQ-GEVTRIHM  222 (342)
Q Consensus       149 s~GAl~W~V~v~-D~s--~~~~i~ClLGIS~e~lVLIe~~s~~VVFncpc~dVIGWt~s--~~~LkIyY~r-GE~i~l~~  222 (342)
                      .=|.-...|... +.+  .....+++|||+..-|.++++.++.++...|-.++- |..+  ...++|-.+. +..+.+. 
T Consensus       220 ~yG~~~f~v~~~~~~~g~~~~~~~~~LgV~~~Gv~v~~~~tk~~l~~~~~~~is-w~~s~~~~~f~i~~~~~~~~~~~~-  297 (322)
T 4dxa_B          220 TYGAAFFTGQIFTKASPSNHKVIPVYVGVNIKGLHLLNMETKALLISLKYGCFM-WQLGDTDTCFQIHSMENKMSFIVH-  297 (322)
T ss_dssp             TTTCEEEEEEEECC-------EEEEEEEECSSEEEEEETTTCCEEEEEETTSEE-EEECSSTTEEEEEESSSCCEEEEE-
T ss_pred             CcCeEEEEEEEeccCCCCccCCCeEEEEEccCceEEEcCCCceeeeccccceeE-EeecCCCCEEEEEECCCCccEEEE-
Confidence            346666666542 222  233578999999999999999999999999999975 9944  4457776643 3344333 


Q ss_pred             cCCCCCChhhHHHHHHhh
Q psy6995         223 REGGGGDRDELMEVVVRL  240 (342)
Q Consensus       223 ~e~~~~~~edl~EIV~RL  240 (342)
                       ..   ++++|..+|.-|
T Consensus       298 -t~---q~~~i~~li~~~  311 (322)
T 4dxa_B          298 -TK---QAGLVVKLLMKL  311 (322)
T ss_dssp             -CT---THHHHHHHHHHH
T ss_pred             -eC---cHHHHHHHHHHH
Confidence             32   568888877654

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=83.10  E-value=0.43  Score=48.56  Aligned_cols=42  Identities=5%  Similarity=0.132  Sum_probs=37.5

Q ss_pred             eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC
Q psy6995         271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS  314 (342)
Q Consensus       271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~  314 (342)
                      +|+.|.+.++|..+|+++||.|  |||+.|.++.  ++.++|+.+.
T Consensus       418 vvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s~~--~l~~~l~~~k  461 (539)
T 4fln_A          418 ILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNIH--HLAHLIDMCK  461 (539)
T ss_dssp             EEEEECCCGGGTTCSSCCSEEEEEETTEECCSHH--HHHHHHHTCC
T ss_pred             EEEEecCCchhhhcCCCCCCEEEeECCEEcCCHH--HHHHHHHHcC
Confidence            7899999999999999999999  9999998764  6888888654

>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A

Probab=82.65  E-value=4  Score=40.43  Aligned_cols=81  Identities=11%  Similarity=0.151  Sum_probs=58.7

Q ss_pred             ceeeEEEEEeccCCCCeeeeeeeeeccceEEEEEccCCcEEEeeeccceeeecc-cCCcEEEEeecCceEEEEecCCCCC
Q psy6995         150 KGAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWAT-STNSLRLYHHQGEVTRIHMREGGGG  228 (342)
Q Consensus       150 ~GAl~W~V~v~D~s~~~~i~ClLGIS~e~lVLIe~~s~~VVFncpc~dVIGWt~-s~~~LkIyY~rGE~i~l~~~e~~~~  228 (342)
                      -|+-...|...+.+  ...+++|||+..-|.++++.++.++..++-.+|..|.. ..+.+.|-.+ |..+.+.+  .   
T Consensus       450 yG~~~F~v~~~~~~--~~~~l~LgV~~~GI~v~~~~~k~~l~~~~~~~I~~~~~~~~~~f~i~~~-~~~l~f~T--~---  521 (555)
T 3au4_A          450 YGSTLFDVECKEGG--FPQELWLGVSADAVSVYKRGEGRPLEVFQYEHILSFGAPLANTYKIVVD-ERELLFET--S---  521 (555)
T ss_dssp             TTCEEEEEEEEESS--SCSEEEEEECSSEEEEEETTCSSCSEEEEGGGEEEEEEEETTEEEEEET-TEEEEEEC--T---
T ss_pred             cCceEEEEEecCCC--CCceEEEEEcccceEEECCCCCeeEEEEEhhheeeecCCCCCEEEEEEC-CcEEEEEC--C---
Confidence            35555556533222  23489999999999999999999999999999999984 5677888776 55444443  3   


Q ss_pred             ChhhHHHHHH
Q psy6995         229 DRDELMEVVV  238 (342)
Q Consensus       229 ~~edl~EIV~  238 (342)
                      +++++..+|+
T Consensus       522 qa~~i~~LI~  531 (555)
T 3au4_A          522 EVVDVAKLMK  531 (555)
T ss_dssp             THHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            4678777765

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=80.47  E-value=6.9  Score=40.45  Aligned_cols=66  Identities=18%  Similarity=0.293  Sum_probs=51.8

Q ss_pred             eeeeeeeccceEEEEEccCCcEEEeeeccceeeecccC------CcEEEEeecCceEEEEecCCCCCChhhHHHHHHh
Q psy6995         168 MHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATST------NSLRLYHHQGEVTRIHMREGGGGDRDELMEVVVR  239 (342)
Q Consensus       168 i~ClLGIS~e~lVLIe~~s~~VVFncpc~dVIGWt~s~------~~LkIyY~rGE~i~l~~~e~~~~~~edl~EIV~R  239 (342)
                      .+++|||+..-|.+++..++.++ ..|-..|..|.+..      ..+.|-..+|+...+.+.+     +++|.++|+-
T Consensus       493 ~~l~LgVn~~GV~v~d~~~k~ll-~f~~~eI~~is~~~~~~~~~~~ftl~~~~~~~~~F~T~~-----a~~I~~LI~~  564 (655)
T 3pvl_A          493 SDVIVAVNWTGVYFVDEQEQVLL-ELSFPEIMAVSSSRGTKMMAPSFTLATIKGDEYTFTSSN-----AEDIRDLVVT  564 (655)
T ss_dssp             SEEEEEEETTEEEEECTTCCEEE-EEEGGGEEEEEEECCCSSSCCEEEEEETTSCEEEEECTT-----HHHHHHHHHH
T ss_pred             ccEEEEEcCCceEEEcCCCceEE-EechhHceEEeccCcccccccEEEEEeccCceEEEEcCC-----HHHHHHHHHH
Confidence            47999999999999999998544 79999999999886      3455555577777776555     5888877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	342
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	1e-09
d1srqa_	336	e.55.1.1 (A:) Rap1 GTPase-activating protein 1, Ra	5e-09
d1r6ja_	82	b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta	1e-07
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	1e-07
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	3e-07
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	6e-07
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	5e-06
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	6e-06
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	1e-05
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	1e-05
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	3e-05
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	3e-05
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	5e-05
d1vaea_	111	b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T	5e-05
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	8e-05
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	1e-04
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	2e-04
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	2e-04
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	2e-04
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	3e-04
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	3e-04
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	4e-04
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	4e-04
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	8e-04
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	8e-04
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	0.001
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	0.001
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	0.001
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	0.002
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	0.002
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	0.002
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	0.003
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	0.003
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	0.004

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (125), Expect = 1e-09
 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 255 KRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT 312
           + +   QLGF VQ +G++  +   G+A + G++ G R+  I   +V    H+++V +L  
Sbjct: 8   RPDLRYQLGFSVQ-NGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSN 66

Query: 313 S-SLVTVTVIPA 323
           +   + +  +PA
Sbjct: 67  AVGEIHMKTMPA 78

>d1srqa_ e.55.1.1 (A:) Rap1 GTPase-activating protein 1, Rap1GAP {Human (Homo sapiens) [TaxId: 9606]} Length = 336

class: Multi-domain proteins (alpha and beta)
fold: Rap/Ran-GAP
superfamily: Rap/Ran-GAP
family: Rap/Ran-GAP
domain: Rap1 GTPase-activating protein 1, Rap1GAP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (131), Expect = 5e-09
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 17 EHQNWLGMDDNLGPVAISLKREKVEYTQESQQMYRYRLLIRTS 59
          EH N+  +D  LG +  SLK + +            RLL+RT 
Sbjct: 21 EHFNYYSLDTALGHLVFSLKYDVIG------DQEHLRLLLRTK 57

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 1e-07
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 251 ELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRLIC--KVAVSTLSHDQMVD 308
            +T+ ++  G +GF  +    +T +     A + GL     +       V  L   Q+ D
Sbjct: 7   TITMHKDSTGHVGFIFKNGK-ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIAD 65

Query: 309 LLKTS-SLVTVTVIPA 323
           +L TS ++VT+T++PA
Sbjct: 66  ILSTSGTVVTITIMPA 81

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (110), Expect = 1e-07
 Identities = 12/86 (13%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 249 AQELTLKRNGLGQLGFHVQPDG----LVTEVEHMGLAYQEGLKQGCRLICKV---AVSTL 301
           ++ +  ++N    +G  ++ +     +V  + H G+ +++G       I ++   +V+  
Sbjct: 2   SRLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQ 61

Query: 302 SHDQMVDLLKTSS-LVTVTVIPALSD 326
           + +Q+  +L+     +T  ++P+  +
Sbjct: 62  TVEQLQKMLREMRGSITFKIVPSYRE 87

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (108), Expect = 3e-07
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 251 ELTLKRNGLGQLGFHVQPDG---LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQ 305
           E+ L ++  G++G  ++       V  V+    A   GL+ G ++  I     +  S D+
Sbjct: 5   EVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDK 64

Query: 306 MVDLLKTSSLVTVTVI 321
              +LK +    +T+ 
Sbjct: 65  AHKVLKQAFGEKITMT 80

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (105), Expect = 6e-07
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 253 TLKRNGLGQLGFHVQPDG--LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVD 308
           T+ R   G  GF +  D    V  V+  G A + GL+Q   +  + +  V      ++  
Sbjct: 2   TIPRGKDG-FGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAH 60

Query: 309 LLKTS-SLVTVTV 320
            +++  S + + V
Sbjct: 61  EIRSCPSEIILLV 73

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (99), Expect = 5e-06
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 9/82 (10%)

Query: 253 TLKRNGLGQLGFHVQPDG-----LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQ 305
            L++   G  GFH+  +       +  VE    A + GL  G RL  +    V   +H Q
Sbjct: 8   CLEKGPNG-YGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQ 66

Query: 306 MVDLLKTS-SLVTVTVIPALSD 326
           +V  ++ + + V + V+   +D
Sbjct: 67  VVSRIRAALNAVRLLVVDPETD 88

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.3 bits (99), Expect = 6e-06
 Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 21/91 (23%)

Query: 253 TLKRNGLGQLGFHVQ------------------PDGLVTEVEHMGLAYQEGLKQGCRL-- 292
            L++      GF ++                      +  V+  G+A++ GL+ G  L  
Sbjct: 10  LLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIE 69

Query: 293 ICKVAVSTLSHDQMVDLLKTS-SLVTVTVIP 322
           +    V  + H Q+V++++   + + V V+ 
Sbjct: 70  VNGQNVVKVGHRQVVNMIRQGGNTLMVKVVM 100

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.4 bits (97), Expect = 1e-05
 Identities = 14/85 (16%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 246 GSPAQELTLKRNGLGQLGFHVQPDG---LVTEVEHMGLAYQEGLKQGCRLICKV---AVS 299
           G   + + +++     LG  V+ +    +++ +   G A + GL      + ++    + 
Sbjct: 16  GETVKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIR 75

Query: 300 TLSHDQMVDLLKTSS-LVTVTVIPA 323
               +++ DLL      +T  +IP+
Sbjct: 76  GKDVNEVFDLLSDMHGTLTFVLIPS 100

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (96), Expect = 1e-05
 Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 8/79 (10%)

Query: 250 QELTLKRNGLGQLGFHV------QPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTL 301
           + +TLK+    QLGF++      Q    +++V     A++ GL++G ++  +  V    +
Sbjct: 17  RIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDI 76

Query: 302 SHDQMVDLLKTSSLVTVTV 320
            H + V++LKT+  +++ V
Sbjct: 77  EHSKAVEILKTAREISMRV 95

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 3e-05
 Identities = 20/89 (22%), Positives = 44/89 (49%), Gaps = 9/89 (10%)

Query: 242 AATPGSPAQELTLKRNGLGQ-LGFHVQPDG------LVTEVEHMGLAYQEGLKQGCRL-- 292
           ++      + ++L+R    + LGF ++          V+ VE   LA +EGL+ G ++  
Sbjct: 2   SSGSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILR 61

Query: 293 ICKVAVSTLSHDQMVDLLKTSSLVTVTVI 321
           +   +++ ++H + V  LK S  + ++V 
Sbjct: 62  VNDKSLARVTHAEAVKALKGSKKLVLSVY 90

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 3e-05
 Identities = 20/82 (24%), Positives = 44/82 (53%), Gaps = 8/82 (9%)

Query: 250 QELTLKRNGLGQLGFHV-----QPDGL-VTEVEHMGLAYQEGLKQGCRL--ICKVAVSTL 301
           +++ +   G   LG  +     Q  G+ ++ V+   L+ + GL+ G ++  +  V  S L
Sbjct: 10  KKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNL 69

Query: 302 SHDQMVDLLKTSSLVTVTVIPA 323
            H + V++LK+S  +T++++ A
Sbjct: 70  DHKEAVNVLKSSRSLTISIVAA 91

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.5 bits (92), Expect = 5e-05
 Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 12/91 (13%)

Query: 242 AATPGSPAQELTLKRNGLGQLGFHVQPDG--------LVTEVEHMGLAYQEG-LKQGCRL 292
           +  P S    + L +    +LG  +            ++++++   +A++ G L+ G +L
Sbjct: 4   SVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKL 63

Query: 293 --ICKVAVSTLSHDQMVDLLKTSS-LVTVTV 320
             I  + + + S +  V +L+    LV + +
Sbjct: 64  LAIDNIRLDSCSMEDAVQILQQCEDLVKLKI 94

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (92), Expect = 5e-05
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 241 RAATPGSPAQELTLKRNGLGQLGFHVQPDG--LVTEVEHMGLAYQEGLKQGCRL--ICKV 296
            A+   SP + +       G LGF ++ +    V  ++    A   G K+G  +  I  V
Sbjct: 8   SASKRWSPPRGIHFTVEE-GDLGFTLRGNTPVQVHFLDPHCSASLAGAKEGDYIVSIQGV 66

Query: 297 AVSTLSHDQMVDLLKTS--SLVTVTVI 321
               L+  +++ LLK+     V + V+
Sbjct: 67  DCKWLTVSEVMKLLKSFGGEEVEMKVV 93

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 8e-05
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 17/101 (16%)

Query: 227 GGDRDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQPDG----LVTEVEHMGLAY 282
           GG+R +    V   R          + +++     LG  +         V++V    +A+
Sbjct: 7   GGERRKDRPYVEEPR---------HVKVQKGSEP-LGISIVSGEKGGIYVSKVTVGSIAH 56

Query: 283 QEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTV 320
           Q GL+ G +L     + + + +  Q   ++      +T+  
Sbjct: 57  QAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILA 97

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 16/87 (18%)

Query: 250 QELTLKRNGLGQLGFHVQPDG----------LVTEVEHMGLAYQEG-LKQGCRL--ICKV 296
            E+ L  + L   G  +Q             LV  +E    A + G L+ G R+  I  +
Sbjct: 10  TEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGI 69

Query: 297 AVSTLSHDQMVDLLKTSSL---VTVTV 320
           A    + ++   LL+ ++L   V + V
Sbjct: 70  ATEDGTMEEANQLLRDAALAHKVVLEV 96

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 15/96 (15%)

Query: 242 AATPGSPAQELTLKRNGLGQLGFHVQ------PDGLVTEVEHMGLAYQ--EGLKQGCRL- 292
              P      + +K +  G+ GF+V+         +V+ V     A      L +G ++ 
Sbjct: 2   GGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVV 61

Query: 293 -ICKVAVSTLSHDQMVDLLKTS-----SLVTVTVIP 322
            I    ++  +HDQ+V  +K S       + + V P
Sbjct: 62  LINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRP 97

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 15/124 (12%)

Query: 225 GGGGDRDELMEVVVRLRAATPGSPAQELTLKRNGLGQLGFHVQ-----PDGL-VTEVEHM 278
           G  GDR   + ++        G   +++ L       LG  ++       G+ +T V+  
Sbjct: 4   GSSGDRRSTLHLL-------QGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPG 56

Query: 279 GLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTVTVIPALSDGTPRRYADLK 336
             A   GLK G ++  +   +   + HD+ V LLK+S  + +TV         R   D  
Sbjct: 57  SEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILTVKDVGRLPHARTTVDET 116

Query: 337 MWRS 340
            W +
Sbjct: 117 KWIA 120

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 11/87 (12%), Positives = 27/87 (31%), Gaps = 16/87 (18%)

Query: 250 QELTLKRNGLGQLGFHVQ------------PDGLVTEVEHMGLAYQEGLKQGCRLICKV- 296
             +TL + G    G  +                 +  +     A+  G  +    I  + 
Sbjct: 5   HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLN 64

Query: 297 --AVSTLSHDQMVDLLKTS-SLVTVTV 320
              V   +   ++DL+K +   + + +
Sbjct: 65  GKDVRNSTEQAVIDLIKEADFKIELEI 91

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (86), Expect = 3e-04
 Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 14/85 (16%)

Query: 250 QELTLKRNGLGQLGFHV-----QPDG----LVTEVEHMGLAYQEGLKQ-GCRL--ICKVA 297
           + +TL+R   G LGF +      P G     V  V   G A ++G  + G ++  +   +
Sbjct: 4   KSITLERGPDG-LGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQS 62

Query: 298 VSTLSHDQMVDLLKTS-SLVTVTVI 321
           +  ++H++ V +LK +   VT+ V+
Sbjct: 63  LEGVTHEEAVAILKRTKGTVTLMVL 87

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 3e-04
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 16/85 (18%)

Query: 251 ELTLKRNGLGQLGFHVQ-----------PDGL-VTEVEHMGLAYQEGLKQGCRL--ICKV 296
            LT+ R   G LG  +             +G+ ++ V   G A + G++ G +L  +  V
Sbjct: 11  TLTILRQTGG-LGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGV 69

Query: 297 AVSTLSHDQMVDLLKTS-SLVTVTV 320
           A+    H + V+ L+ + + V + V
Sbjct: 70  ALQGAEHHEAVEALRGAGTAVQMRV 94

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 4e-04
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 242 AATPGSPAQELTLKRNGLGQLGFHVQ------PDGLVTEVEHMGLAYQEG-LKQGCRL-- 292
           + + G    ++ L+R   G  GF +          L+  V  MG A ++G L  G  L  
Sbjct: 3   SGSSGYKELDVHLRRMESG-FGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVY 61

Query: 293 ICKVAVSTLSHDQMVDLLKTS---SLVTVTV 320
           +  + V+  +H  ++DL+  +     V +TV
Sbjct: 62  VDGIPVAGKTHRYVIDLMHHAARNGQVNLTV 92

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.8 bits (85), Expect = 4e-04
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 11/87 (12%)

Query: 246 GSPAQELTLKRNGLGQLGFHVQPDG------LVTEVEHMGLAYQEG-LKQGCRL--ICKV 296
           G+    + LKR G G LG  +          +++ +   GLA + G +  G R+  I   
Sbjct: 1   GAIIYTVELKRYG-GPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSS 59

Query: 297 AVSTLSHDQMVDLLKTS-SLVTVTVIP 322
           ++      + + LL+ +   VT+ +  
Sbjct: 60  SLKGKPLSEAIHLLQMAGETVTLKIKK 86

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (83), Expect = 8e-04
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 10/81 (12%)

Query: 250 QELTLKRNGLGQLGFHV-----QPDGL-VTEVEHMGLAYQEGLKQGCRLICKV---AVST 300
           + +T+++   G LG  +         + ++++     A Q         I  V    +S+
Sbjct: 6   RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 65

Query: 301 LSHDQMVDLLKTS-SLVTVTV 320
            +HD+ V  LK +   V + V
Sbjct: 66  ATHDEAVQALKKTGKEVVLEV 86

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (83), Expect = 8e-04
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 9/83 (10%)

Query: 247 SPAQELTLKRNGLGQLGFHVQ------PDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAV 298
           S +  LT+   G    GF +          +VT+V   G A    L+ G  +  I   + 
Sbjct: 3   SGSSGLTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSA 62

Query: 299 STLSHDQMVDLLKTS-SLVTVTV 320
             + H +    ++ S S + + +
Sbjct: 63  ENMLHAEAQSKIRQSASPLRLQL 85

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 19/89 (21%)

Query: 254 LKRNGLGQLGFHVQ--------PDGL-------VTEVEHMGLAYQEGLKQGCRLICKV-- 296
           LK      LGF+++          GL       ++ +   GLA   GL      + +V  
Sbjct: 9   LKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNG 68

Query: 297 -AVSTLSHDQMVDLLKTS-SLVTVTVIPA 323
             V+  + DQ+ D++  + S + +TV PA
Sbjct: 69  IEVAGKTLDQVTDMMVANSSNLIITVKPA 97

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 0.001
 Identities = 12/85 (14%), Positives = 30/85 (35%), Gaps = 14/85 (16%)

Query: 251 ELTLKRNGLGQLGFHVQPDG--------LVTEVEHMGLAYQEGLKQGCRLICKV---AVS 299
           ++ +++     LG  +   G        ++  + H G A + G       I  +   ++ 
Sbjct: 1   DVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLV 60

Query: 300 TLSHDQMVDLLK---TSSLVTVTVI 321
            L       ++K     S V + ++
Sbjct: 61  GLPLSTCQSIIKGLKNQSRVKLNIV 85

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (82), Expect = 0.001
 Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 15/86 (17%)

Query: 250 QELTLKRNGLGQLGFHV-----QPDG----LVTEVEHMGLAYQEG-LKQGCRL--ICKVA 297
           +  T+ ++    LG  V        G     +T+V+   LA   G L+ G  +       
Sbjct: 20  KRTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKP 79

Query: 298 VSTLSHDQMVDLLKTSS---LVTVTV 320
           +   +++++ +++  S     V + V
Sbjct: 80  LPGATNEEVYNIILESKSEPQVEIIV 105

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 14/85 (16%)

Query: 250 QELTLKRNGLGQLGFHVQ----------PDGLVTEVEHMGLAYQEGLKQGCRLICKV--- 296
            E+ L  + +   G  +Q             L++ +E    A + G+ Q    +  +   
Sbjct: 17  TEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGI 76

Query: 297 AVSTLSHDQMVDLLKTSS-LVTVTV 320
                + ++   LL+ SS    VT+
Sbjct: 77  PTEDSTFEEANQLLRDSSITSKVTL 101

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 10/82 (12%)

Query: 250 QELTLKRNGLGQLGFHVQ-----PDG--LVTEVEHMGLAYQEGLKQGCRLI---CKVAVS 299
               L +     LGF +       +    V  V   GLA QEG  Q    +      ++ 
Sbjct: 10  HVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLK 69

Query: 300 TLSHDQMVDLLKTSSLVTVTVI 321
             +H   + +L+ +      VI
Sbjct: 70  GTTHHDALAILRQAREPRQAVI 91

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 251 ELTLKRNGLGQLGFHVQPDG-----LVTEVEHMGLAYQEGLKQGCRLICKV---AVSTLS 302
            + L +  +G LGF V+        +++++   G A Q GL Q   +I  V    +  LS
Sbjct: 4   SVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLS 63

Query: 303 HDQMVDLLKTSSLVTVTVI 321
           +D  +++L+  +  T  V+
Sbjct: 64  YDSALEVLRGIASETHVVL 82

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 16/86 (18%)

Query: 250 QELTLKRNGLGQLGFHV-----------QPDGLVTEVEHMGLAYQEGLKQGC---RLICK 295
           +E+TL+R   G LGF +            P   +T++   G A Q+G  +       + +
Sbjct: 3   EEITLERGNSG-LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNE 61

Query: 296 VAVSTLSHDQMVDLLKTS-SLVTVTV 320
           V V  ++H   V+ LK + S+V + V
Sbjct: 62  VDVREVTHSAAVEALKEAGSIVRLYV 87

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 243 ATPGSPAQEL-----TLKRNGLGQLGFHVQ-----PDGL-VTEVEHMGLAYQEGL-KQGC 290
            + GS  Q+       +++   G  GF ++        L V  +   G A + G  + G 
Sbjct: 1   GSSGSSGQDFDYFTVDMEKGAKG-FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGD 59

Query: 291 RL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTV 320
           ++  I   +   ++H + ++L+K+    V + +
Sbjct: 60  QIIEINGESTRDMTHARAIELIKSGGRRVRLLL 92

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.5 bits (79), Expect = 0.004
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 16/85 (18%)

Query: 251 ELTLKRNGLGQLGFHVQ------------PDGLVTEVEHMGLAYQEGLKQGCRL--ICKV 296
            +TL+++     G  V                ++++V   G A    L++  R+  +   
Sbjct: 10  TVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPADG-LLQENDRVVMVNGT 68

Query: 297 AVSTLSHDQMVDLLKTS-SLVTVTV 320
            +  + H   V  L+ S  +  + V
Sbjct: 69  PMEDVLHSFAVQQLRKSGKIAAIVV 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	342
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.68
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.62
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.56
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.52
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.52
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.52
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.51
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.5
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.5
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.48
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.47
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.44
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.44
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.44
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.43
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.43
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.43
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.41
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.41
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.41
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.4
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.39
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.39
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.38
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.38
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.37
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.37
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.36
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.35
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.34
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.32
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.32
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.31
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.31
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.31
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.28
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.28
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.26
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.26
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.25
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.25
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.25
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.24
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.24
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.22
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.22
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.21
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.19
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.18
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.16
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.12
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	99.04
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	98.98
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	98.98
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	98.98
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.86
d1srqa_	336	Rap1 GTPase-activating protein 1, Rap1GAP {Human (	98.68
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.3
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.17
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	98.15
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	98.06
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	97.81
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	97.73
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	97.63
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	97.22
d1mixa2	92	Talin {Chicken (Gallus gallus) [TaxId: 9031]}	96.8

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.1e-17  Score=127.20  Aligned_cols=76  Identities=29%  Similarity=0.493  Sum_probs=71.3

Q ss_pred             CCceEEEeecCCCCCCCeEEcCCceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEEeCC
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTVIPA  323 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~EG~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~VipP  323 (342)
                      .+++.++|.|+..++|||.+. .|+|++|.++|+|+++||++||+|  |||++|..++|+|++++|+.+. .|+|+|+|.
T Consensus         3 ~~pr~V~l~k~~~g~~Gf~i~-~g~V~~v~~g~~A~~~Gl~~GD~Il~INg~~v~~~t~~~~~~ll~~~~~~v~l~v~p~   81 (82)
T d1r6ja_           3 MDPRTITMHKDSTGHVGFIFK-NGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA   81 (82)
T ss_dssp             TCCEEEEEECCTTSCCCEEEE-TTEEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEEC
T ss_pred             CCCEEEEEEeCCCCCcCEEEE-EEEEEEECCCChHHhcCcCCCCEEEEeCCeEEeeCCHHHHHHHHHcCCCEEEEEEEcC
Confidence            478999999998899999997 789999999999999999999999  9999999999999999999764 799999985

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=7.7e-17  Score=123.01  Aligned_cols=74  Identities=28%  Similarity=0.538  Sum_probs=66.8

Q ss_pred             eEEEeecCCC-CCCCeEEcCCceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEEeCCC
Q psy6995         250 QELTLKRNGL-GQLGFHVQPDGLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTVIPAL  324 (342)
Q Consensus       250 ~El~LrR~~~-gqLGFhV~~EG~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~VipP~  324 (342)
                      +.++|+|+.. .+|||+++ +|+|++|+++|+|++||||+||+|  |||++|..++|++++++|+.+. .|+++++|..
T Consensus         2 ~tv~l~r~~~~~~lGf~i~-~g~V~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~l~viP~s   79 (79)
T d1y7na1           2 TTVLIRRPDLRYQLGFSVQ-NGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAA   79 (79)
T ss_dssp             EEEEEEESSTTSCCCEEEE-TTEEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEEECCC
T ss_pred             EEEEEEcCCCCCCcCEEEE-CCEEEEEcCCCHHHHCCCCCCCEEEEECCEEeCCCCHHHHHHHHHcCCCEEEEEEEcCC
Confidence            3467888754 89999997 899999999999999999999999  9999999999999999999765 7999999863

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=9.2e-16  Score=119.70  Aligned_cols=81  Identities=23%  Similarity=0.292  Sum_probs=71.9

Q ss_pred             CCceEEEeecCCCCCCCeEEcCC-----ceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEE
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQPD-----GLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTV  318 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~E-----G~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v  318 (342)
                      |-++.++|.|... +|||.+..+     -||..|+++|+|++|||++||+|  |||++|..++|++++++|+.+. .|+|
T Consensus         2 ~~Pr~v~l~k~~~-g~Gf~i~~~~~~~~~~V~~V~~g~~A~~aGl~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~~~v~L   80 (91)
T d1g9oa_           2 MLPRLCCLEKGPN-GYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRL   80 (91)
T ss_dssp             CCCEEEEEECBTT-BCCEEEEECTTCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEE
T ss_pred             CCCEEEEEEECCC-eeeEEEEecCCCCCEEEEEEcCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            3478999999864 599999643     28999999999999999999999  9999999999999999999654 8999


Q ss_pred             EEeCCCCCCC
Q psy6995         319 TVIPALSDGT  328 (342)
Q Consensus       319 ~VipP~~dg~  328 (342)
                      +|++|+++..
T Consensus        81 ~v~~~~~~e~   90 (91)
T d1g9oa_          81 LVVDPETDEQ   90 (91)
T ss_dssp             EEECCCCSCC
T ss_pred             EEECCCCCCc
Confidence            9999998864

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.6e-14  Score=118.74  Aligned_cols=97  Identities=25%  Similarity=0.283  Sum_probs=80.4

Q ss_pred             cCCCCCceEEEeecCCCCCCCeEEcC-----Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC
Q psy6995         243 ATPGSPAQELTLKRNGLGQLGFHVQP-----DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS  314 (342)
Q Consensus       243 VT~Gcet~El~LrR~~~gqLGFhV~~-----EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~  314 (342)
                      +.++.+.++++|.|.....|||.|..     .| ||+.|+++|+|+++|||+||+|  |||++|..++|+|++++||.+.
T Consensus        15 ~~~~~~~~~v~l~~~~~~~lGf~i~gg~~~~~gv~V~~V~~g~~A~~~gL~~GD~Il~INg~~v~~~s~~evv~~lr~~~   94 (128)
T d1uf1a_          15 LLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSR   94 (128)
T ss_dssp             CCCCSSEEEEEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTTCS
T ss_pred             ecCCCCeEEEEEEECCCCccCEEEEeeccCCCCEEEEEECCCChHHhcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            34456778999999877889999963     24 7999999999999999999999  9999999999999999999988


Q ss_pred             cEEEEEeCCCCCCCCCcCCCccccc
Q psy6995         315 LVTVTVIPALSDGTPRRYADLKMWR  339 (342)
Q Consensus       315 ~V~v~VipP~~dg~PRRgc~~~~~~  339 (342)
                      .|.|+|.++...-..+.......|.
T Consensus        95 ~v~l~v~~~~~~p~~~~~~~~~~~~  119 (128)
T d1uf1a_          95 HLILTVKDVGRLPHARTTVDETKWI  119 (128)
T ss_dssp             EEEEEEECCSCCSSCSCCCCSSCSC
T ss_pred             cEEEEEEECCcCCccccccCCcccC
Confidence            9999998765555555555555543

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=2.9e-14  Score=112.94  Aligned_cols=77  Identities=26%  Similarity=0.375  Sum_probs=68.5

Q ss_pred             CCCceEEEeecCCCCCCCeEEcC-----Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccCcEE
Q psy6995         246 GSPAQELTLKRNGLGQLGFHVQP-----DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVT  317 (342)
Q Consensus       246 Gcet~El~LrR~~~gqLGFhV~~-----EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~~V~  317 (342)
                      -+.++.++|.|+..++|||++..     .| ||++|.++|+|+++||++||+|  |||++|..++|+|++++||++..|+
T Consensus        13 ~~~pr~V~l~r~~~~~lGf~i~gg~~~~~gi~V~~V~~~s~A~~~GL~~GD~Il~VNg~~v~~~~~~ev~~llk~~~~v~   92 (104)
T d1wi2a_          13 QFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTAREIS   92 (104)
T ss_dssp             SSCCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHHSSSEE
T ss_pred             cCcCEEEEEEeCCCCCcceEEEccccCCCCEEEEEECCCChhHhcccccCCEEEEECCEECCCCCHHHHHHHHhcCCeEE
Confidence            34678999999877899999952     24 7999999999999999999999  9999999999999999999888888


Q ss_pred             EEEeC
Q psy6995         318 VTVIP  322 (342)
Q Consensus       318 v~Vip  322 (342)
                      ++|-.
T Consensus        93 l~V~~   97 (104)
T d1wi2a_          93 MRVRF   97 (104)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            88743

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3e-14  Score=113.45  Aligned_cols=82  Identities=20%  Similarity=0.281  Sum_probs=72.1

Q ss_pred             CCCceEEEeecCCCCCCCeEEcC------------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHH
Q psy6995         246 GSPAQELTLKRNGLGQLGFHVQP------------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDL  309 (342)
Q Consensus       246 Gcet~El~LrR~~~gqLGFhV~~------------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdl  309 (342)
                      .+++.+++|.|+..+.|||.+..            .+ ||..|.++|+|+++| |++||||  |||++|..++|+|++++
T Consensus         8 ~~~~~~V~l~r~~~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~l   87 (114)
T d1uewa_           8 SLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKL   87 (114)
T ss_dssp             CCCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHH
T ss_pred             CceeEEEEEEeCCCCCCCEEEeeecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHH
Confidence            46899999999887889999952            12 899999999999998 9999999  99999999999999999


Q ss_pred             Hhcc-CcEEEEEeCCCCCC
Q psy6995         310 LKTS-SLVTVTVIPALSDG  327 (342)
Q Consensus       310 Lrts-~~V~v~VipP~~dg  327 (342)
                      ||.+ ..|+|+|+++....
T Consensus        88 l~~~~~~v~l~V~r~~~~~  106 (114)
T d1uewa_          88 IKDAGLSVTLRIIPQEELN  106 (114)
T ss_dssp             HHHTTTEEEEEECCCSCCC
T ss_pred             HHcCCCeEEEEEEeCCCcC
Confidence            9965 57999999876544

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=2.9e-14  Score=110.14  Aligned_cols=75  Identities=28%  Similarity=0.468  Sum_probs=65.4

Q ss_pred             CceEEEeecCCCCCCCeEEcC----------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP----------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS  313 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~----------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts  313 (342)
                      |..|++|.|.. .+|||.+-+          .| ||++|.++|+|+++| |++||+|  |||++|..++|+|++++|+.+
T Consensus         1 E~~~V~l~k~~-~glG~~i~gg~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~   79 (93)
T d1rgra_           1 EYEEITLERGN-SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA   79 (93)
T ss_dssp             CEEEEEEECCS-SCCSEEECCCSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHT
T ss_pred             CCEEEEEEeCC-CcCCEEEEeecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcC
Confidence            57899999975 469999931          24 699999999999999 9999999  999999999999999999965


Q ss_pred             C-cEEEEEeCC
Q psy6995         314 S-LVTVTVIPA  323 (342)
Q Consensus       314 ~-~V~v~VipP  323 (342)
                      . .|+|+|...
T Consensus        80 ~~~v~L~v~R~   90 (93)
T d1rgra_          80 GSIVRLYVMRR   90 (93)
T ss_dssp             TTEEEEEEECS
T ss_pred             CCEEEEEEEeC
Confidence            4 799998754

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.9e-14  Score=109.94  Aligned_cols=78  Identities=18%  Similarity=0.421  Sum_probs=70.0

Q ss_pred             ceEEEeecCCCCCCCeEEcCC---c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEE
Q psy6995         249 AQELTLKRNGLGQLGFHVQPD---G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTV  320 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~E---G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~V  320 (342)
                      ++.+.|.|+..++|||.+...   | +|..|.++|+|+++| |++||+|  |||++|..++|++++++|+.+. .|+|++
T Consensus         2 ~R~V~l~k~~~~~lG~~l~~~~~~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~L~i   81 (88)
T d1kwaa_           2 SRLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKI   81 (88)
T ss_dssp             CEEEEEEECSSSCCCEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEEE
T ss_pred             cEEEEEEeCCCCCccEEEEEcCCCCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEE
Confidence            578899999889999999643   2 899999999999999 9999999  9999999999999999999765 899999


Q ss_pred             eCCCCC
Q psy6995         321 IPALSD  326 (342)
Q Consensus       321 ipP~~d  326 (342)
                      +|...+
T Consensus        82 ~p~~~~   87 (88)
T d1kwaa_          82 VPSYRE   87 (88)
T ss_dssp             ECCCCC
T ss_pred             EeCCcC
Confidence            987653

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=1.6e-14  Score=113.14  Aligned_cols=77  Identities=21%  Similarity=0.403  Sum_probs=66.9

Q ss_pred             CceEEEeecCCCCCCCeEEcCC------------------ceEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHH
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPD------------------GLVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMV  307 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~E------------------G~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~v  307 (342)
                      +.+.++|.|+...+|||.+...                  -+|+.|.++|+|++||||+||+|  |||++|..++|++++
T Consensus         5 ~~~tV~l~r~~~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aGL~~GD~Il~INg~~v~~~~h~evv   84 (104)
T d1q3oa_           5 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVV   84 (104)
T ss_dssp             EEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             ceEEEEEEECCCCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEEcCeEcCCCCHHHHH
Confidence            4577889998878999999421                  18999999999999999999999  999999999999999


Q ss_pred             HHHhcc-CcEEEEEeCCC
Q psy6995         308 DLLKTS-SLVTVTVIPAL  324 (342)
Q Consensus       308 dlLrts-~~V~v~VipP~  324 (342)
                      ++|+.+ ..|+|+|++-.
T Consensus        85 ~~ik~~~~~v~L~V~~~~  102 (104)
T d1q3oa_          85 NMIRQGGNTLMVKVVMVT  102 (104)
T ss_dssp             HHHHHTTTEEEEEEEEEE
T ss_pred             HHHHcCCCeEEEEEEecC
Confidence            999965 47888887653

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.4e-14  Score=113.24  Aligned_cols=84  Identities=27%  Similarity=0.388  Sum_probs=72.9

Q ss_pred             CceEEEeecCCC-CCCCeEEc-----CCc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccCcEEE
Q psy6995         248 PAQELTLKRNGL-GQLGFHVQ-----PDG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTV  318 (342)
Q Consensus       248 et~El~LrR~~~-gqLGFhV~-----~EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~~V~v  318 (342)
                      +.++++|.|... .+|||.|.     ..| ||+.|.++|+|+++||++||+|  |||++|..++|++++++||++..+.+
T Consensus         8 ~~~~v~l~r~~~~~glG~~i~gg~~~~~~i~V~~v~~gg~A~~~gL~~GD~Il~ING~~v~~~~~~~v~~ll~~~~~~~l   87 (101)
T d1ueza_           8 EVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVL   87 (101)
T ss_dssp             CCEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSSSSSSCCE
T ss_pred             CEEEEEEEECCCCCeeCEEEEecccCCCCEEEEEECCCChHHhcCCCCCcEEEEECCEECCCCCHHHHHHHHhcCCCEEE
Confidence            578888998754 57999994     124 7999999999999999999999  99999999999999999998888889


Q ss_pred             EEeCCCCCCCCCc
Q psy6995         319 TVIPALSDGTPRR  331 (342)
Q Consensus       319 ~VipP~~dg~PRR  331 (342)
                      +|+.....-.|-.
T Consensus        88 ~V~~~~~~~~Pss  100 (101)
T d1ueza_          88 SVYSAGRISGPSS  100 (101)
T ss_dssp             EECCCCCCSSSSC
T ss_pred             EEEECCCCCCCcC
Confidence            9988776666654

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=3.2e-14  Score=112.57  Aligned_cols=77  Identities=21%  Similarity=0.358  Sum_probs=69.5

Q ss_pred             CCCceEEEeecCCCCCCCeEEcCCc---eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-cEEE
Q psy6995         246 GSPAQELTLKRNGLGQLGFHVQPDG---LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTV  318 (342)
Q Consensus       246 Gcet~El~LrR~~~gqLGFhV~~EG---~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v  318 (342)
                      |...+++.|+|+..+.|||.+..++   +|++|.++|+|+++| |++||+|  |||++|..++|+|++++||.+. .|++
T Consensus        16 ~~~i~~V~l~k~~~~~lG~~v~~~~~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~v~L   95 (100)
T d1va8a1          16 GETVKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTF   95 (100)
T ss_dssp             TEECEEEEEEECTTCCCCEEEEECSSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEE
T ss_pred             CceEEEEEEEeCCCCCccEEEEecCCCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCCCeEEE
Confidence            3446778899987789999998765   999999999999999 9999999  9999999999999999999666 7999


Q ss_pred             EEeC
Q psy6995         319 TVIP  322 (342)
Q Consensus       319 ~Vip  322 (342)
                      +|+|
T Consensus        96 ~v~P   99 (100)
T d1va8a1          96 VLIP   99 (100)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9998

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.7e-14  Score=113.31  Aligned_cols=84  Identities=27%  Similarity=0.513  Sum_probs=71.9

Q ss_pred             CCCCCceEEEeecCCCCCCCeEEcC--------------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHH
Q psy6995         244 TPGSPAQELTLKRNGLGQLGFHVQP--------------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQ  305 (342)
Q Consensus       244 T~Gcet~El~LrR~~~gqLGFhV~~--------------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq  305 (342)
                      +.|...++++|.|....+|||++..              .| ||+.|.++|+|+++| |++||||  |||++|..++|+|
T Consensus         5 ssg~~~~~V~l~k~~~~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~e   84 (111)
T d1ujua_           5 SSGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGE   84 (111)
T ss_dssp             CCSCSSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHH
T ss_pred             CCCCCeEEEEEEeCCCCccCEEEeccccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHH
Confidence            3455678999999877899999941              23 799999999999999 9999999  9999999999999


Q ss_pred             HHHHHhccC-cEEEEEeCCCCCC
Q psy6995         306 MVDLLKTSS-LVTVTVIPALSDG  327 (342)
Q Consensus       306 ~vdlLrts~-~V~v~VipP~~dg  327 (342)
                      ++++||.+. .|+|+|.++.+.+
T Consensus        85 a~~~lk~~~~~v~L~V~r~~~~~  107 (111)
T d1ujua_          85 AVQLLRSVGDTLTVLVCDGFESG  107 (111)
T ss_dssp             HHHHHSSCSSEEEECCCCCCCCS
T ss_pred             HHHHHHcCCCeEEEEEEECCCCc
Confidence            999999755 7888888776543

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=6.2e-14  Score=106.04  Aligned_cols=70  Identities=20%  Similarity=0.269  Sum_probs=62.2

Q ss_pred             EEeecCCCCCCCeEEcCCc--eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEEeC
Q psy6995         252 LTLKRNGLGQLGFHVQPDG--LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTVIP  322 (342)
Q Consensus       252 l~LrR~~~gqLGFhV~~EG--~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~Vip  322 (342)
                      ++|.|.. ++|||++..+.  ||+.|+++|+|++|||++||+|  |||++|..++|+|++++|+.+. .|+++|..
T Consensus         1 v~l~r~~-~g~Gf~l~~~~~~~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~~~v~L~v~R   75 (77)
T d2f5ya1           1 ITIPRGK-DGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWR   75 (77)
T ss_dssp             EEEECBT-TBTSEEEECSSSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEE
T ss_pred             CEEecCC-CcccEEEECCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEEE
Confidence            5678876 45999998765  9999999999999999999999  9999999999999999999766 68877754

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=2.1e-13  Score=106.67  Aligned_cols=83  Identities=20%  Similarity=0.377  Sum_probs=70.6

Q ss_pred             ccCCCCCceEEEeecCCCCCCCeEEcC-------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHH
Q psy6995         242 AATPGSPAQELTLKRNGLGQLGFHVQP-------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLL  310 (342)
Q Consensus       242 ~VT~Gcet~El~LrR~~~gqLGFhV~~-------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlL  310 (342)
                      .+...-.+..++|.|.....|||.+..       +| ||..|+++|+|+++| |++||+|  |||++|..++|+|++++|
T Consensus         4 ~~~p~~~~~~V~l~k~~~~~lG~~v~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll   83 (99)
T d1p1da2           4 SVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQIL   83 (99)
T ss_dssp             CCBCCSSCEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHH
T ss_pred             cccCCCCcEEEEEEECCCCccCEEEEecCCCCCCCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHH
Confidence            345555678899999877889999942       13 899999999999999 9999999  999999999999999999


Q ss_pred             hccC-cEEEEEeCCC
Q psy6995         311 KTSS-LVTVTVIPAL  324 (342)
Q Consensus       311 rts~-~V~v~VipP~  324 (342)
                      +.+. .|+|+|-..+
T Consensus        84 ~~~~~~v~L~V~r~~   98 (99)
T d1p1da2          84 QQCEDLVKLKIRKDE   98 (99)
T ss_dssp             HHCTTCEEEEEECCC
T ss_pred             HcCCCeEEEEEEeCC
Confidence            9755 6888887543

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.3e-13  Score=105.19  Aligned_cols=73  Identities=25%  Similarity=0.362  Sum_probs=65.4

Q ss_pred             CceEEEeecCCCCCCCeEEcC--Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC--cEEEEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP--DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS--LVTVTV  320 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~--EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~--~V~v~V  320 (342)
                      ++++++|.|+..++|||.+..  +| +|++|.++|+|++|||++||+|  |||++|..++|+|++++|+.+.  .|+++|
T Consensus         2 ~pr~v~l~k~~~~~lG~~l~~~~~g~~V~~v~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~~v~l~v   81 (85)
T d1w9ea1           2 DPREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTI   81 (85)
T ss_dssp             CCEEEEEECCTTSCCSEEEEEETTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEE
T ss_pred             CCEEEEEEeCCCCCEeEEEEeCCCCEEEEEECCCCHHHHcCCCCccEEEEECCEEeCCCCHHHHHHHHhcCCCCEEEEEE
Confidence            579999999998999999964  34 7999999999999999999999  9999999999999999998654  566665

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=3.5e-14  Score=113.99  Aligned_cols=78  Identities=24%  Similarity=0.347  Sum_probs=67.0

Q ss_pred             CceEEEeecCCCCCCCeEEcCCc--eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC--cEEEEEe
Q psy6995         248 PAQELTLKRNGLGQLGFHVQPDG--LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS--LVTVTVI  321 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~EG--~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~--~V~v~Vi  321 (342)
                      .++.++|.|.. ++|||.|..+.  +|..|+++|+|+++|||+||+|  |||++|..++|+|++++|+.+.  .|+|+|+
T Consensus        15 ~pr~v~l~k~~-~g~Gf~i~g~~~v~V~~V~~~spA~~~GL~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~~v~l~v~   93 (111)
T d1vaea_          15 PPRGIHFTVEE-GDLGFTLRGNTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVV   93 (111)
T ss_dssp             CCCCCCEECCS-SCCSCCEESSSSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEE
T ss_pred             CCEEEEEEECC-CccCEEEECCccEEEEEEcCCChHHhcccCcccEEEEECCEEcCCCCHHHHHHHHHcCCCCeEEEEEE
Confidence            35677888865 56999998774  8999999999999999999999  9999999999999999999653  5888887


Q ss_pred             CCCCC
Q psy6995         322 PALSD  326 (342)
Q Consensus       322 pP~~d  326 (342)
                      .|.+.
T Consensus        94 ~~~~~   98 (111)
T d1vaea_          94 SLLDS   98 (111)
T ss_dssp             CEECC
T ss_pred             CCCCC
Confidence            66443

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=2.6e-13  Score=105.54  Aligned_cols=75  Identities=25%  Similarity=0.443  Sum_probs=65.4

Q ss_pred             CceEEEeecCCCCCCCeEEcC-------------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHH
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP-------------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLL  310 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~-------------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlL  310 (342)
                      ++.+++|.|.. ++|||++..             .| ||++|.++|+|+++| |++||+|  |||++|..++|++++++|
T Consensus         4 ~~~~V~L~k~~-~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~l   82 (99)
T d1ozia_           4 DTFEVELAKTD-GSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETL   82 (99)
T ss_dssp             CEEEEEEECCS-SSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred             CEEEEEEEECC-CCCcEEEEeeccCCCcccccCCCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHHHH
Confidence            67899999975 689999942             12 799999999999999 9999999  999999999999999999


Q ss_pred             hccC-cEEEEEeCC
Q psy6995         311 KTSS-LVTVTVIPA  323 (342)
Q Consensus       311 rts~-~V~v~VipP  323 (342)
                      |.+. .|+|+|..+
T Consensus        83 k~~~~~v~L~v~R~   96 (99)
T d1ozia_          83 RNTGQVVHLLLEKG   96 (99)
T ss_dssp             HHSCSEEEEEEECC
T ss_pred             HCCCCeEEEEEEeC
Confidence            9654 788888654

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.43  E-value=2.1e-13  Score=107.04  Aligned_cols=76  Identities=26%  Similarity=0.419  Sum_probs=65.6

Q ss_pred             ceEEEeecCCC-CCCCeEEcC--------------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHH
Q psy6995         249 AQELTLKRNGL-GQLGFHVQP--------------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDL  309 (342)
Q Consensus       249 t~El~LrR~~~-gqLGFhV~~--------------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdl  309 (342)
                      .++++|.|.+. .+|||++.+              .| ||++|.++|+|+++| |++||+|  |||++|..++|++++++
T Consensus         3 ~r~V~L~k~~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~   82 (98)
T d1rzxa_           3 HRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDM   82 (98)
T ss_dssp             CEEEEEECCCSSSCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             cEEEEEEECCCCCcccEEEecccCCCccccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHH
Confidence            46788777654 689999941              13 799999999999999 9999999  99999999999999999


Q ss_pred             HhccC-cEEEEEeCCC
Q psy6995         310 LKTSS-LVTVTVIPAL  324 (342)
Q Consensus       310 Lrts~-~V~v~VipP~  324 (342)
                      |+.+. .|+|+|.|++
T Consensus        83 l~~~~~~v~l~v~p~~   98 (98)
T d1rzxa_          83 MVANSSNLIITVKPAN   98 (98)
T ss_dssp             HHHTCTEEEEEEECCC
T ss_pred             HHcCCCeEEEEEEeCc
Confidence            99655 7999999874

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=2.3e-13  Score=105.59  Aligned_cols=75  Identities=23%  Similarity=0.344  Sum_probs=65.2

Q ss_pred             CCceEEEeecCC-CCCCCeEEc----CCc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEE
Q psy6995         247 SPAQELTLKRNG-LGQLGFHVQ----PDG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVT  317 (342)
Q Consensus       247 cet~El~LrR~~-~gqLGFhV~----~EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~  317 (342)
                      .|.++++|.|+. ..+|||++.    ..| ||++|.++|+|+++||++||+|  |||++|..++|++++++|+++. .|+
T Consensus         5 ~e~~~v~l~k~~~~~~~Gf~i~~~~~~~g~~V~~V~~~g~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~   84 (91)
T d1m5za_           5 VELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLD   84 (91)
T ss_dssp             CEEEEEEEECCTTCSSSSEEEEECTTSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEE
T ss_pred             CceEEEEEEECCCCCceeEEEeccCCCCCEEEEEECCCChhHhCcCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
Confidence            356889999975 478999995    235 6999999999999999999999  9999999999999999999764 688


Q ss_pred             EEEe
Q psy6995         318 VTVI  321 (342)
Q Consensus       318 v~Vi  321 (342)
                      |+|.
T Consensus        85 L~v~   88 (91)
T d1m5za_          85 LVIS   88 (91)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7764

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.1e-13  Score=104.47  Aligned_cols=74  Identities=27%  Similarity=0.433  Sum_probs=64.9

Q ss_pred             eEEEeecCCCCCCCeEEcC----------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-
Q psy6995         250 QELTLKRNGLGQLGFHVQP----------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-  314 (342)
Q Consensus       250 ~El~LrR~~~gqLGFhV~~----------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-  314 (342)
                      .+++|.|.. .+|||.+.+          .| ||.+|.++|+|+++| |++||||  |||+++..++|++++++||.+. 
T Consensus         3 ~~V~L~k~~-~glG~~i~gg~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~~~   81 (92)
T d2fe5a1           3 MEVNLLKGP-KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSD   81 (92)
T ss_dssp             EEEEEECCT-TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCS
T ss_pred             EEEEEEECC-CccCEEEEeecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcCCC
Confidence            578899965 569999941          23 799999999999999 9999999  9999999999999999999655 


Q ss_pred             cEEEEEeCCC
Q psy6995         315 LVTVTVIPAL  324 (342)
Q Consensus       315 ~V~v~VipP~  324 (342)
                      .|+++|..|.
T Consensus        82 ~v~L~v~Rpg   91 (92)
T d2fe5a1          82 MVYLKVAKPG   91 (92)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEEEEECCC
Confidence            7999998874

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.41  E-value=2.9e-13  Score=104.62  Aligned_cols=73  Identities=21%  Similarity=0.341  Sum_probs=63.6

Q ss_pred             CceEEEeecCCCCCCCeEEcC--------C---c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhc
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP--------D---G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKT  312 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~--------E---G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrt  312 (342)
                      ....++|.|++...|||.+..        +   | ||.+|.++|+|+++| |++||+|  |||++|..++|++++++|+.
T Consensus         3 ~i~~V~L~k~~~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~   82 (94)
T d1ihja_           3 LIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE   82 (94)
T ss_dssp             EEEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EEEEEEEEeCCCCCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHc
Confidence            346788999888899999941        1   2 799999999999999 9999999  99999999999999999997


Q ss_pred             cC-cEEEEE
Q psy6995         313 SS-LVTVTV  320 (342)
Q Consensus       313 s~-~V~v~V  320 (342)
                      +. .|+|+|
T Consensus        83 ~~~~v~L~V   91 (94)
T d1ihja_          83 ADFKIELEI   91 (94)
T ss_dssp             SCSEEEEEE
T ss_pred             CCCEEEEEE
Confidence            64 688776

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.2e-13  Score=107.40  Aligned_cols=95  Identities=16%  Similarity=0.205  Sum_probs=80.1

Q ss_pred             ccCCCCCceEEEeecCCCCCCCeEEcC------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHh
Q psy6995         242 AATPGSPAQELTLKRNGLGQLGFHVQP------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLK  311 (342)
Q Consensus       242 ~VT~Gcet~El~LrR~~~gqLGFhV~~------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLr  311 (342)
                      .+++.-.+..+.|.|...++|||.+-.      .| ||++|.++|+|+++| |++||||  |||++|..++|++++++||
T Consensus         9 ~~~~~~~p~~V~l~k~~~~~lGi~i~~~~~~~~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~   88 (117)
T d1v62a_           9 TVANASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLA   88 (117)
T ss_dssp             SSCCSSSSEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHH
T ss_pred             ccccCCCCEEEEEEcCCCCCcCEEEEeeccCCCCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHH
Confidence            356667788899999866899999941      23 899999999999998 9999999  9999999999999999999


Q ss_pred             ccC-cEEEEEeCCCCCCCCCcCCCcc
Q psy6995         312 TSS-LVTVTVIPALSDGTPRRYADLK  336 (342)
Q Consensus       312 ts~-~V~v~VipP~~dg~PRRgc~~~  336 (342)
                      ++. .|+|+|.+....-.|.+-++-|
T Consensus        89 ~~~~~v~l~v~~~~~~~~~~~~~s~P  114 (117)
T d1v62a_          89 SISEKVRLEILPVPQSQRPLRPSSGP  114 (117)
T ss_dssp             SCSSEEEEEECCBTTBCCSSCCCCSS
T ss_pred             cCCCcEEEEEEECCCCCCCCCCCCCC
Confidence            665 7999998877777776665544

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=3.5e-13  Score=104.52  Aligned_cols=73  Identities=23%  Similarity=0.322  Sum_probs=64.6

Q ss_pred             CceEEEeecCCCCCCCeEEcC----C-c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-cEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP----D-G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVT  317 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~----E-G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~  317 (342)
                      +.++++|.|+..+.|||.+.+    + | ||..|.++|+|+++| |++||+|  |||+++..++|++++++|+.+. .|+
T Consensus         4 q~r~V~l~k~~~~~lG~~i~gg~~~~~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~   83 (90)
T d1qava_           4 QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV   83 (90)
T ss_dssp             SCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred             eEEEEEEEeCCCCccCEEEEccccCCCCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            568899999887899999941    2 2 899999999999999 9999999  9999999999999999999766 577


Q ss_pred             EEE
Q psy6995         318 VTV  320 (342)
Q Consensus       318 v~V  320 (342)
                      ++|
T Consensus        84 l~v   86 (90)
T d1qava_          84 LEV   86 (90)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.9e-13  Score=107.97  Aligned_cols=81  Identities=27%  Similarity=0.441  Sum_probs=67.9

Q ss_pred             CCCCCceEEEeecCCCCCCCeEEcC---Cc---eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC
Q psy6995         244 TPGSPAQELTLKRNGLGQLGFHVQP---DG---LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS  314 (342)
Q Consensus       244 T~Gcet~El~LrR~~~gqLGFhV~~---EG---~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~  314 (342)
                      +.|++.++++|+|+.. .|||.+..   .+   +|++|.++|+|+++| |++||+|  |||++|..++|+|++++||.+.
T Consensus         5 ss~~~~~~V~l~k~~~-glG~~i~gg~~~~~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~   83 (103)
T d1uepa_           5 SSGYKELDVHLRRMES-GFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAA   83 (103)
T ss_dssp             SSSEEEECCEEESSSS-SCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEEEeCCc-eEeEEEEecccCCCcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            4567788899999764 59999952   11   799999999999999 9999999  9999999999999999999653


Q ss_pred             ---cEEEEEeCCCC
Q psy6995         315 ---LVTVTVIPALS  325 (342)
Q Consensus       315 ---~V~v~VipP~~  325 (342)
                         .|+|+|.++..
T Consensus        84 ~~~~v~l~v~r~~~   97 (103)
T d1uepa_          84 RNGQVNLTVRRKVL   97 (103)
T ss_dssp             HHTEEEEEEEEECC
T ss_pred             CCCEEEEEEEeCCC
Confidence               58887766544

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.5e-13  Score=103.15  Aligned_cols=75  Identities=24%  Similarity=0.349  Sum_probs=64.3

Q ss_pred             CceEEEeecCCCCCCCeEEcC--------------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHH
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP--------------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDL  309 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~--------------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdl  309 (342)
                      ++++++|.|+....|||.+-+              .| ||.+|.++|+|+++| |++||+|  |||++|..++|+|++++
T Consensus         1 qpr~V~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~   80 (96)
T d2fcfa1           1 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEA   80 (96)
T ss_dssp             SCEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CCEEEEEEeCCCCCCCEEEEcccCCCcccccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHH
Confidence            368899999877899999831              13 799999999999999 9999999  99999999999999999


Q ss_pred             Hhcc-CcEEEEEeC
Q psy6995         310 LKTS-SLVTVTVIP  322 (342)
Q Consensus       310 Lrts-~~V~v~Vip  322 (342)
                      |+.+ ..|+|+|-+
T Consensus        81 lk~~~~~v~L~V~r   94 (96)
T d2fcfa1          81 IRKAGNPVVFMVQS   94 (96)
T ss_dssp             HHTCCSSEEEEEEC
T ss_pred             HHcCCCeEEEEEEE
Confidence            9965 478887754

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.4e-13  Score=105.39  Aligned_cols=75  Identities=32%  Similarity=0.523  Sum_probs=65.3

Q ss_pred             CceEEEeecCCCCCCCeEEcC-------------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHH
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP-------------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLL  310 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~-------------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlL  310 (342)
                      ++.+++|.|+. +.|||++..             .| ||++|.++|+|+++| |++||+|  |||++|..++|+|++++|
T Consensus         8 ~~~~V~l~k~~-~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~l   86 (107)
T d1uhpa_           8 KSLTLVLHRDS-GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAF   86 (107)
T ss_dssp             EEEEEEECCSS-SCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CEEEEEEEECC-CccCEEEEecccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHHHH
Confidence            57888899975 679999941             23 799999999999999 9999999  999999999999999999


Q ss_pred             hccC-cEEEEEeCC
Q psy6995         311 KTSS-LVTVTVIPA  323 (342)
Q Consensus       311 rts~-~V~v~VipP  323 (342)
                      +.+. .|+++|+..
T Consensus        87 k~~~~~v~l~v~r~  100 (107)
T d1uhpa_          87 KTAKEPIVVQVLRR  100 (107)
T ss_dssp             HHCCSSEEEEEEEC
T ss_pred             HhCCCcEEEEEEEC
Confidence            9654 789988754

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1e-12  Score=104.29  Aligned_cols=76  Identities=20%  Similarity=0.227  Sum_probs=66.3

Q ss_pred             CceEEEeecCCCCCCCeEEcC--------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP--------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-  314 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~--------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-  314 (342)
                      +.++++|.|.. ..|||.+-.        .| ||..|.++|+|+++| |++||||  |||++|..++|+|++++|+++. 
T Consensus         8 ~~~~V~l~k~~-~glG~~i~~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~   86 (110)
T d1um1a_           8 YVFTVELERGP-SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGK   86 (110)
T ss_dssp             CEEEEEEECCT-TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCS
T ss_pred             CEEEEEEEECC-CCCCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            46899999976 469999931        12 799999999999999 9999999  9999999999999999999765 


Q ss_pred             cEEEEEeCCC
Q psy6995         315 LVTVTVIPAL  324 (342)
Q Consensus       315 ~V~v~VipP~  324 (342)
                      .|+++|..+.
T Consensus        87 ~v~l~v~r~~   96 (110)
T d1um1a_          87 KMRFLVAKSD   96 (110)
T ss_dssp             EEEEEEECCC
T ss_pred             eEEEEEEeCC
Confidence            7999988764

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=1.2e-12  Score=102.03  Aligned_cols=79  Identities=24%  Similarity=0.411  Sum_probs=67.6

Q ss_pred             CCCceEEEeecCCCCCCCeEEcCC-----c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-c
Q psy6995         246 GSPAQELTLKRNGLGQLGFHVQPD-----G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-L  315 (342)
Q Consensus       246 Gcet~El~LrR~~~gqLGFhV~~E-----G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~  315 (342)
                      |-...++.|+|++ ++|||.+...     + ||.+|.++|+|+++| |++||+|  |||++|..++|+|++++|+.+. .
T Consensus         1 g~~i~tV~l~k~~-~~lG~~i~g~~~~~~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~   79 (95)
T d1n7ea_           1 GAIIYTVELKRYG-GPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGET   79 (95)
T ss_dssp             CCCEEEEEEECTT-SCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSE
T ss_pred             CCEEEEEEEEECC-CcEeEEEEecccCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            3445678899975 6899999632     2 899999999999999 9999999  9999999999999999999654 7


Q ss_pred             EEEEEeCCCC
Q psy6995         316 VTVTVIPALS  325 (342)
Q Consensus       316 V~v~VipP~~  325 (342)
                      |+++|.++.+
T Consensus        80 v~l~v~r~~~   89 (95)
T d1n7ea_          80 VTLKIKKQTD   89 (95)
T ss_dssp             EEEEEECCCC
T ss_pred             EEEEEEECCC
Confidence            8888887643

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=7.3e-13  Score=101.95  Aligned_cols=72  Identities=29%  Similarity=0.492  Sum_probs=63.0

Q ss_pred             ceEEEeecCCCCCCCeEEcC-----C---c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-Cc
Q psy6995         249 AQELTLKRNGLGQLGFHVQP-----D---G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SL  315 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~-----E---G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~  315 (342)
                      .++++|+|.. +.|||++.+     +   | ||+.|+++|+|+++| |++||+|  |||++|..++|++++++|+.+ ..
T Consensus         3 ~~~V~l~K~~-~~lG~~i~~g~~~~~~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~~~~   81 (88)
T d2fnea1           3 CKSITLERGP-DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGT   81 (88)
T ss_dssp             EEEEEECCBT-TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSS
T ss_pred             EEEEEEEeCC-CccCEEEEeccCCCCCCcCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcCCCc
Confidence            5788898865 569999942     1   2 899999999999998 9999999  999999999999999999965 57


Q ss_pred             EEEEEe
Q psy6995         316 VTVTVI  321 (342)
Q Consensus       316 V~v~Vi  321 (342)
                      |+|+|+
T Consensus        82 v~L~Vl   87 (88)
T d2fnea1          82 VTLMVL   87 (88)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999887

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.7e-13  Score=103.81  Aligned_cols=75  Identities=15%  Similarity=0.271  Sum_probs=64.5

Q ss_pred             CceEEEeecCCCCCCCeEEcC--------C---c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhc
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP--------D---G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKT  312 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~--------E---G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrt  312 (342)
                      |..+++|.|+. +.|||++.+        +   | ||.+|.++|+|+++| |++||+|  |||+++..++|++++++||+
T Consensus         2 e~~~V~L~k~~-~glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~   80 (94)
T d1wf8a1           2 ELFPVELEKDE-DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRN   80 (94)
T ss_dssp             EEEEEEEECBT-TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHH
T ss_pred             eEEEEEEEeCC-CCcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            45688899976 569999942        1   2 799999999999999 9999999  99999999999999999996


Q ss_pred             cC-cEEEEEeCC
Q psy6995         313 SS-LVTVTVIPA  323 (342)
Q Consensus       313 s~-~V~v~VipP  323 (342)
                      +. .|+++|..+
T Consensus        81 ~~~~v~L~V~R~   92 (94)
T d1wf8a1          81 TKGNVRFVIGRE   92 (94)
T ss_dssp             CCSEEEEEEEEE
T ss_pred             CCCeEEEEEEeC
Confidence            54 788888654

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=8.9e-13  Score=102.72  Aligned_cols=72  Identities=28%  Similarity=0.476  Sum_probs=60.9

Q ss_pred             ceEEEeecCCCCCCCeEEcC-----------Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC
Q psy6995         249 AQELTLKRNGLGQLGFHVQP-----------DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS  314 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~-----------EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~  314 (342)
                      ...++|.|+. +.|||++.+           .| ||+.|+++|+|++|||++||+|  |||++|.+++|++++.+|+.+.
T Consensus         9 ~~~v~l~k~~-~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~   87 (97)
T d1x5qa1           9 ELTLTILRQT-GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAG   87 (97)
T ss_dssp             EEEEEEECSS-SSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHSCC
T ss_pred             EEEEEEEeCC-CeeCEEEEeccCCCCccCCCCCEEEEEECCCChhHhhcccCCCEEEEECCEECCCCCHHHHHHHHhCCC
Confidence            4556688865 569999931           12 7999999999999999999999  9999999999999999999654


Q ss_pred             -cEEEEEe
Q psy6995         315 -LVTVTVI  321 (342)
Q Consensus       315 -~V~v~Vi  321 (342)
                       .|+|+|.
T Consensus        88 ~~v~l~v~   95 (97)
T d1x5qa1          88 TAVQMRVW   95 (97)
T ss_dssp             SEEEEEEE
T ss_pred             CEEEEEEE
Confidence             7888774

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=9.9e-13  Score=104.18  Aligned_cols=77  Identities=25%  Similarity=0.422  Sum_probs=68.9

Q ss_pred             CceEEEeecCCCCCCCeEEcC--C---c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccCcEEEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP--D---G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTVT  319 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~--E---G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~~V~v~  319 (342)
                      ..+++.|.+.+...|||.+..  |   | ||+.|.++|+|++|||++||+|  |||++|..++|+|++++|+.+..+.++
T Consensus         8 ~~~~v~i~~~~~~glG~~i~~g~~~~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~~~~l~   87 (101)
T d1x5na1           8 KEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTIS   87 (101)
T ss_dssp             SSEEEEECCCSSCCCCEEEEECCSSSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHCSSEEEE
T ss_pred             ccEEEEEEeeCCCcccEEEeccCCCCCCEEEEEECCCChHHhCCCCcccEEEEECCEECCCCCHHHHHHHHhCCCCEEEE
Confidence            457788988877889999962  2   3 7999999999999999999999  999999999999999999998899999


Q ss_pred             EeCCC
Q psy6995         320 VIPAL  324 (342)
Q Consensus       320 VipP~  324 (342)
                      ++++.
T Consensus        88 v~~~~   92 (101)
T d1x5na1          88 IVAAA   92 (101)
T ss_dssp             ECSST
T ss_pred             EEECC
Confidence            98753

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.3e-12  Score=99.88  Aligned_cols=73  Identities=26%  Similarity=0.308  Sum_probs=62.2

Q ss_pred             ceEEEeecCCCCCCCeEEcCC-----c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEE
Q psy6995         249 AQELTLKRNGLGQLGFHVQPD-----G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVT  319 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~E-----G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~  319 (342)
                      +.+++|.+  .+.|||.+...     + +|.+|.++++|++|||++||+|  |||++|..++|+|++++|+.+. .|+|+
T Consensus         2 p~~V~l~~--~~~~Gf~i~gg~~~~~~v~V~~v~~gs~A~~~~L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~~~v~L~   79 (85)
T d1rgwa_           2 AYSVTLTG--PGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLT   79 (85)
T ss_dssp             EEEEEECC--SSCCCEEECCCGGGTSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEE
T ss_pred             CEEEEecC--CCCCCEEEEeecCCCCCEEEEEecCCChHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            35677754  47899999632     3 8999999999999999999999  9999999999999999999655 78888


Q ss_pred             EeCC
Q psy6995         320 VIPA  323 (342)
Q Consensus       320 VipP  323 (342)
                      |-..
T Consensus        80 V~R~   83 (85)
T d1rgwa_          80 LQKS   83 (85)
T ss_dssp             EESC
T ss_pred             EEEC
Confidence            8643

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=9.6e-13  Score=103.70  Aligned_cols=66  Identities=23%  Similarity=0.396  Sum_probs=58.9

Q ss_pred             ceEEEeecCCCCCCCeEEcC--C--c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC
Q psy6995         249 AQELTLKRNGLGQLGFHVQP--D--G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS  314 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~--E--G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~  314 (342)
                      ...+.|.|+..++|||++.+  +  | ||.+|.++|+|++|| ||+||+|  |||+++..++|++++++|+.+.
T Consensus         2 i~~V~l~k~~~~glG~~i~~~~~~~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~   75 (112)
T d1qaua_           2 VISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA   75 (112)
T ss_dssp             EEEEEEECBTTTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSC
T ss_pred             eEEEEEEECCCCcEeEEEEeecCCCCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCC
Confidence            35788999888999999942  2  3 799999999999999 9999999  9999999999999999999654

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.7e-12  Score=102.70  Aligned_cols=77  Identities=29%  Similarity=0.424  Sum_probs=65.2

Q ss_pred             ceEEEeecCCCCCCCeEEcC-----------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc
Q psy6995         249 AQELTLKRNGLGQLGFHVQP-----------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS  313 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~-----------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts  313 (342)
                      .+.+.|.|+.. +|||++..           .| ||.+|.++|+|+++| |++||+|  |||++|..++|+|++++|+.+
T Consensus         8 ~~~v~l~k~~~-glGf~i~gg~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~   86 (105)
T d1whaa_           8 RHVACLARSER-GLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA   86 (105)
T ss_dssp             EEEEEECCCTT-CCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC
T ss_pred             CEEEEEEECCC-ccCEEEEeccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHHcC
Confidence            46677888764 49999951           13 799999999999999 9999999  999999999999999999965


Q ss_pred             C-cEEEEEeCCCCC
Q psy6995         314 S-LVTVTVIPALSD  326 (342)
Q Consensus       314 ~-~V~v~VipP~~d  326 (342)
                      . .|+++|..+...
T Consensus        87 ~~~v~l~v~R~~~~  100 (105)
T d1whaa_          87 SPTIALLLEREAGS  100 (105)
T ss_dssp             CSCEEEEEEECCCC
T ss_pred             CCeEEEEEEECCCC
Confidence            4 799998866543

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2e-12  Score=102.49  Aligned_cols=77  Identities=25%  Similarity=0.302  Sum_probs=64.8

Q ss_pred             CCceEEEeecCCCCCCCeEEcC-----Cc-eEEEEcccchhhhh--CCCCCCEE--eecccccCCCHHHHHHHHhccC--
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQP-----DG-LVTEVEHMGLAYQE--GLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS--  314 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~-----EG-~Vt~VE~~g~Ae~A--GLR~G~RL--Icg~sV~~lsHeq~vdlLrts~--  314 (342)
                      .+.+.+.|.|+..+.|||++..     .| ||.+|.++|+|+++  ||++||+|  |||++|..++|+|++++||.+.  
T Consensus         7 ~~~~~v~l~~~~~g~lG~~l~gg~d~~~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~~~   86 (106)
T d2cs5a1           7 DNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCER   86 (106)
T ss_dssp             SCCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHC
T ss_pred             CcEEEEEEEeCCCCCccEEEEeeecCCCCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            3567788999888999999952     13 89999999999987  89999999  9999999999999999998542  


Q ss_pred             ---cEEEEEeCC
Q psy6995         315 ---LVTVTVIPA  323 (342)
Q Consensus       315 ---~V~v~VipP  323 (342)
                         .|++++-|.
T Consensus        87 ~~~~v~L~vrp~   98 (106)
T d2cs5a1          87 HSGELMLLVRPN   98 (106)
T ss_dssp             CSSCEEEEEECC
T ss_pred             CCcEEEEEECCC
Confidence               467766553

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=2.6e-12  Score=101.72  Aligned_cols=75  Identities=24%  Similarity=0.374  Sum_probs=65.4

Q ss_pred             CCceEEEeecCCCCCCCeEEcCC----c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-cEE
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQPD----G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVT  317 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~E----G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~  317 (342)
                      .+++.++|.|+. ++|||.+...    | ||+.|.++|+|+++| |++||+|  |||++|..++|+|++++|+.+. .++
T Consensus         8 ~~~r~V~l~k~~-~glG~~i~~~~~~~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~   86 (102)
T d1tp5a1           8 REPRRIVIHRGS-TGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT   86 (102)
T ss_dssp             CSCEEEEEECTT-SCCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEE
T ss_pred             CCCEEEEEEeCC-CcccEEEEeccCCCCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcCCCeEE
Confidence            468999999965 6799999522    4 899999999999999 9999999  9999999999999999999654 688


Q ss_pred             EEEeC
Q psy6995         318 VTVIP  322 (342)
Q Consensus       318 v~Vip  322 (342)
                      |+|..
T Consensus        87 L~v~~   91 (102)
T d1tp5a1          87 IIAQY   91 (102)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87753

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.4e-12  Score=98.21  Aligned_cols=71  Identities=18%  Similarity=0.327  Sum_probs=61.2

Q ss_pred             EEEeecCCCCCCCeEEcCC--c------eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC---cE
Q psy6995         251 ELTLKRNGLGQLGFHVQPD--G------LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS---LV  316 (342)
Q Consensus       251 El~LrR~~~gqLGFhV~~E--G------~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~---~V  316 (342)
                      |++|.|..-..|||.+-+.  +      ||.+|.++|+|+++| |++||+|  |||++|..++|++++++||++.   .|
T Consensus         1 eV~l~k~~g~~LGi~i~~~~~~~~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~v   80 (85)
T d1x45a1           1 DVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRV   80 (85)
T ss_dssp             EEEEECCTTSCCCEEEECCTTTSSSCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEE
T ss_pred             CeEEEeCCCCccCEEEEeCCCCCCCCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEE
Confidence            6889998667999999432  1      899999999999999 9999999  9999999999999999999654   46


Q ss_pred             EEEEe
Q psy6995         317 TVTVI  321 (342)
Q Consensus       317 ~v~Vi  321 (342)
                      +|+|+
T Consensus        81 ~L~Vv   85 (85)
T d1x45a1          81 KLNIV   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            66654

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=3.4e-12  Score=104.05  Aligned_cols=76  Identities=24%  Similarity=0.320  Sum_probs=64.7

Q ss_pred             CceEEEeecCCCCCCCeEEcC-----C----c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP-----D----G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS  314 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~-----E----G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~  314 (342)
                      +++|++|.|+...+|||.+..     +    + ||..|.++|+|+++| |++||+|  |||++|..++|+|++++||.+.
T Consensus        15 ~~~ev~l~k~~~~glGf~i~gg~~~~~~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~~   94 (122)
T d1v5qa_          15 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS   94 (122)
T ss_dssp             EEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHT
T ss_pred             eeEEEEEecCCCCccCEEEecccCCCccCCCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcCC
Confidence            689999999988899999952     1    2 999999999999998 9999999  9999999999999999998543


Q ss_pred             ---cEEEEEeCC
Q psy6995         315 ---LVTVTVIPA  323 (342)
Q Consensus       315 ---~V~v~VipP  323 (342)
                         .++|.+-.+
T Consensus        95 ~~~~l~l~~~~~  106 (122)
T d1v5qa_          95 ITSKVTLEIEFD  106 (122)
T ss_dssp             TTTCEEEEEEEE
T ss_pred             CceEEEEEEecc
Confidence               455554333

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=6.1e-12  Score=101.24  Aligned_cols=73  Identities=18%  Similarity=0.319  Sum_probs=64.0

Q ss_pred             CceEEEeecCCCCCCCeEEcC--C-c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEE
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP--D-G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTV  320 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~--E-G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~V  320 (342)
                      +.+.++|.|.. ..|||++..  + | ||+.|.++|+|+++|||+||+|  |||++|..++|+|++++|+... .|+|+|
T Consensus        19 ~~r~v~l~k~~-~glG~~i~gg~~~gi~V~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~l~v   97 (117)
T d1uita_          19 EPRHVKVQKGS-EPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILA   97 (117)
T ss_dssp             CCEEEEEECSS-CCCCEEEEECTTSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEEE
T ss_pred             CCEEEEEEeCC-CccCEEEEccCCCCEEEEEEecCChHHhCCCCCCCEeeeECCcccCCCCHHHHHHHHHCCCCeEEEEE
Confidence            46788899865 569999963  2 2 9999999999999999999999  9999999999999999999665 688877


Q ss_pred             e
Q psy6995         321 I  321 (342)
Q Consensus       321 i  321 (342)
                      .
T Consensus        98 ~   98 (117)
T d1uita_          98 Q   98 (117)
T ss_dssp             C
T ss_pred             E
Confidence            5

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=3.6e-12  Score=100.52  Aligned_cols=75  Identities=19%  Similarity=0.263  Sum_probs=64.8

Q ss_pred             CceEEEeecCCCCCCCeEEcC-----------Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP-----------DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS  313 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~-----------EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts  313 (342)
                      ++..++|.|+..++|||.+.+           .| ||+.|+++|+|+ +||++||+|  |||++|..++|++++++||.+
T Consensus         7 e~~tV~l~k~~~~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs~A~-~~L~~GD~Il~INg~~v~~~~~~ev~~ll~~~   85 (104)
T d2csja1           7 EQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKS   85 (104)
T ss_dssp             EEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHS
T ss_pred             ccEEEEEEeCCCCCcCEEEEcccCCCccccCCCCEEEEEECCCChhh-cCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            456788999988899999942           12 899999999998 899999999  999999999999999999966


Q ss_pred             -CcEEEEEeCC
Q psy6995         314 -SLVTVTVIPA  323 (342)
Q Consensus       314 -~~V~v~VipP  323 (342)
                       ..|+++|-.|
T Consensus        86 ~~~v~l~V~R~   96 (104)
T d2csja1          86 GKIAAIVVKRP   96 (104)
T ss_dssp             CSEEEEEEEEE
T ss_pred             CCEEEEEEEeC
Confidence             4788888654

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=2.1e-12  Score=100.55  Aligned_cols=74  Identities=22%  Similarity=0.293  Sum_probs=63.1

Q ss_pred             EEeecCCCCCCCeEEcC----C-c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc-CcEEEEEeC
Q psy6995         252 LTLKRNGLGQLGFHVQP----D-G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS-SLVTVTVIP  322 (342)
Q Consensus       252 l~LrR~~~gqLGFhV~~----E-G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts-~~V~v~Vip  322 (342)
                      +++.+.+...|||++..    + + +|+.|.++++|+++||++||+|  |||++|..++|+|++++|+.+ ..|+|+|..
T Consensus         8 ~tv~~~g~~~~Gf~i~gg~d~~~~i~V~~v~~gs~A~~~gL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R   87 (94)
T d1vb7a_           8 LTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDR   87 (94)
T ss_dssp             EEEEECSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEEC
T ss_pred             EEEEEECCCcCCEEEEeeccCCCCEEEEeccCCChhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            45555666789999963    1 2 8999999999999999999999  999999999999999999965 589999987


Q ss_pred             CCC
Q psy6995         323 ALS  325 (342)
Q Consensus       323 P~~  325 (342)
                      +..
T Consensus        88 ~~~   90 (94)
T d1vb7a_          88 SSG   90 (94)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=6.1e-12  Score=98.75  Aligned_cols=67  Identities=25%  Similarity=0.320  Sum_probs=60.5

Q ss_pred             CCceEEEeecCCCCCCCeEEcC---------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQP---------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS  313 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~---------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts  313 (342)
                      .+.++++|.|+..++|||.+..         .| ||..|.++|+|+++| |++||+|  |||++|..++|++++++||++
T Consensus         7 ~e~~~V~l~~~~~~~lG~~i~gg~~~~~~~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~~   86 (99)
T d1x5ra1           7 TETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDA   86 (99)
T ss_dssp             SEEEEEEECCCTTTCCCEEEECCSCSSSBCSSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHHH
T ss_pred             eeeEEEEEEcCCCCCcCEEEEEeccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            4788999999988899999941         12 999999999999999 9999999  999999999999999999954

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=9.6e-12  Score=96.09  Aligned_cols=74  Identities=27%  Similarity=0.410  Sum_probs=61.7

Q ss_pred             CceEEEeecCCCCCCCeEEcC---C-----c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP---D-----G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-  314 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~---E-----G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-  314 (342)
                      +..+++++++  .+|||.+..   .     | ||++|.++|+|+++| |++||+|  |||++|..++|++++++|+.+. 
T Consensus         4 ei~~v~l~~~--~glG~~i~g~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~~~   81 (92)
T d1t2ma1           4 EIITVTLKKQ--NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSS   81 (92)
T ss_dssp             EEEEEEEECS--SSCCEEEEEECCSSCCSCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSCCS
T ss_pred             eEEEEEEeCC--CccCEEEEeecCCCCCCCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcCCC
Confidence            3456777775  359999931   1     3 799999999999999 9999999  9999999999999999999655 


Q ss_pred             cEEEEEeCC
Q psy6995         315 LVTVTVIPA  323 (342)
Q Consensus       315 ~V~v~VipP  323 (342)
                      .|+|+|..+
T Consensus        82 ~v~L~v~R~   90 (92)
T d1t2ma1          82 VVTLEVAKQ   90 (92)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEEEeC
Confidence            688888654

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.2e-11  Score=97.77  Aligned_cols=73  Identities=22%  Similarity=0.325  Sum_probs=61.7

Q ss_pred             ceEEEeecCCCCCCCeEEcC------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-cEE
Q psy6995         249 AQELTLKRNGLGQLGFHVQP------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVT  317 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~  317 (342)
                      .+.++|.|+..++|||++.+      .| ||.+|.++|+|+++| |++||+|  |||++|..++|++++++||.+. .+.
T Consensus         9 ~~~v~l~k~~~~~lG~~i~gg~~~~~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~~   88 (107)
T d1x6da1           9 IHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQ   88 (107)
T ss_dssp             EEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSE
T ss_pred             cEEEEEEcCCCCccCEEEeeccCCCCCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCCCCEE
Confidence            45677888877899999941      13 999999999999998 9999999  9999999999999999999655 455


Q ss_pred             EEEe
Q psy6995         318 VTVI  321 (342)
Q Consensus       318 v~Vi  321 (342)
                      ++++
T Consensus        89 l~v~   92 (107)
T d1x6da1          89 AVIV   92 (107)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.7e-11  Score=98.86  Aligned_cols=82  Identities=18%  Similarity=0.348  Sum_probs=68.1

Q ss_pred             CceEEEeecCCC------CCCCeEEc-------CC---c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHH
Q psy6995         248 PAQELTLKRNGL------GQLGFHVQ-------PD---G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMV  307 (342)
Q Consensus       248 et~El~LrR~~~------gqLGFhV~-------~E---G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~v  307 (342)
                      +..++.+.|+..      ..|||.|.       .+   | ||+.|.++|+|+++| |++||+|  |||++|..++|+|++
T Consensus        12 p~~~v~l~r~~~~~~~~g~glG~~i~gg~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~   91 (117)
T d1ujda_          12 PHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQ   91 (117)
T ss_dssp             CEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CceeEEEEecccccccCCcccCEEEeccccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHH
Confidence            457788888744      35999993       12   2 799999999999999 9999999  999999999999999


Q ss_pred             HHHhccC-cEEEEEeCCCCCCCC
Q psy6995         308 DLLKTSS-LVTVTVIPALSDGTP  329 (342)
Q Consensus       308 dlLrts~-~V~v~VipP~~dg~P  329 (342)
                      ++|+.+. .|+|+|-.......|
T Consensus        92 ~~i~~~~~~v~l~v~r~~~~sgP  114 (117)
T d1ujda_          92 SIISQQSGEAEICVRLDLNMSGP  114 (117)
T ss_dssp             HHHSCCSSCEEEEEESSCCCCCC
T ss_pred             HHHHcCCCeEEEEEEECCCCCCC
Confidence            9999665 799998877655444

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4.6e-12  Score=101.01  Aligned_cols=72  Identities=21%  Similarity=0.297  Sum_probs=61.2

Q ss_pred             EEeecCCCCCCCeEEcC-----C---c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc---CcE
Q psy6995         252 LTLKRNGLGQLGFHVQP-----D---G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS---SLV  316 (342)
Q Consensus       252 l~LrR~~~gqLGFhV~~-----E---G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts---~~V  316 (342)
                      +++.|+..+.|||++.+     .   | ||.+|.++|+|+++| |++||+|  |||+++..++|+|++++|+.+   ..|
T Consensus        22 ~~~~~~~~~~lG~~i~gg~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v  101 (108)
T d2cssa1          22 TTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQV  101 (108)
T ss_dssp             SCCSSSCSSCSSEEEEEEEECTTSSEEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCE
T ss_pred             EEEecCCCCCcCEEEeccCCCCCCCcCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEE
Confidence            34556666899999931     1   3 999999999999998 9999999  999999999999999999854   368


Q ss_pred             EEEEeCC
Q psy6995         317 TVTVIPA  323 (342)
Q Consensus       317 ~v~VipP  323 (342)
                      +|+|..|
T Consensus       102 ~l~v~RP  108 (108)
T d2cssa1         102 EIIVSRP  108 (108)
T ss_dssp             EEEEEEC
T ss_pred             EEEEeCc
Confidence            8888776

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.25  E-value=6.7e-12  Score=97.35  Aligned_cols=74  Identities=22%  Similarity=0.374  Sum_probs=63.1

Q ss_pred             eEEEeecCCCCCCCeEEcC------C-c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhc----cC
Q psy6995         250 QELTLKRNGLGQLGFHVQP------D-G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKT----SS  314 (342)
Q Consensus       250 ~El~LrR~~~gqLGFhV~~------E-G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrt----s~  314 (342)
                      ..++|.|+..+.|||.+-+      + | ||.+|.++|+|+++| |++||+|  |||+++..++|++++++||.    ..
T Consensus         3 ~tV~l~k~~~~~lGi~i~gg~~~~~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~~~   82 (92)
T d2f0aa1           3 ITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPG   82 (92)
T ss_dssp             EEEEECHHHHCSCCEEEECCCCTTSCCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHSSS
T ss_pred             EEEEEEeCCCCccCEEEEccCCCCCCCCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCCCC
Confidence            4678888877899999932      2 4 799999999999999 9999999  99999999999999999984    33


Q ss_pred             cEEEEEeCC
Q psy6995         315 LVTVTVIPA  323 (342)
Q Consensus       315 ~V~v~VipP  323 (342)
                      .|+|+|-.+
T Consensus        83 ~v~L~V~R~   91 (92)
T d2f0aa1          83 PIVLTVAKL   91 (92)
T ss_dssp             CEEEEEECC
T ss_pred             cEEEEEEeC
Confidence            588887654

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=9.2e-12  Score=101.27  Aligned_cols=75  Identities=17%  Similarity=0.256  Sum_probs=63.0

Q ss_pred             CceEEEeecCCCCCCCeEEcC-------C-c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP-------D-G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-  314 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~-------E-G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-  314 (342)
                      +...++|.|.. +.|||+|.+       + | ||.+|+++|+|+++| |++||+|  |||+++..++|++++++||... 
T Consensus        29 ~~~~V~l~k~~-~glG~~i~gg~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~~~  107 (130)
T d1i16a_          29 TVCTVTLEKMS-AGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPD  107 (130)
T ss_dssp             EEEEEEEETTS-SSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCS
T ss_pred             eEEEEEEEeCC-CccCEEEeeccCCCCCCCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcCCC
Confidence            34667788865 569999952       2 2 899999999999999 9999999  9999999999999999999643 


Q ss_pred             -cEEEEEeCC
Q psy6995         315 -LVTVTVIPA  323 (342)
Q Consensus       315 -~V~v~VipP  323 (342)
                       .|+++|..+
T Consensus       108 ~~v~l~v~r~  117 (130)
T d1i16a_         108 GPVTIVIRRK  117 (130)
T ss_dssp             SEEEEEEEEE
T ss_pred             CeEEEEEEcC
Confidence             688887644

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=6.7e-12  Score=103.09  Aligned_cols=77  Identities=18%  Similarity=0.274  Sum_probs=66.0

Q ss_pred             CCCceEEEeecCCCCCCCeEEcCCc---eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc---CcE
Q psy6995         246 GSPAQELTLKRNGLGQLGFHVQPDG---LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS---SLV  316 (342)
Q Consensus       246 Gcet~El~LrR~~~gqLGFhV~~EG---~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts---~~V  316 (342)
                      --++..++|.+.. .+|||.+..++   +|.+|.++|+|+++| |++||+|  |||++|..++|++++++||..   ..|
T Consensus        25 ~~~~~~v~l~~g~-~GlG~~i~~~~~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~~g~~v  103 (126)
T d1wifa_          25 LNKVIQTKLTVGN-LGLGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVL  103 (126)
T ss_dssp             CCCEEEEEEECCT-TCCCCCEEEETTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEE
T ss_pred             CCcEEEEEEeeCC-CcEEEEEEecCCcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCCCCCEE
Confidence            3456777888765 45999997664   899999999999999 9999999  999999999999999999964   379


Q ss_pred             EEEEeCC
Q psy6995         317 TVTVIPA  323 (342)
Q Consensus       317 ~v~VipP  323 (342)
                      +|+|..+
T Consensus       104 ~L~v~R~  110 (126)
T d1wifa_         104 QIKAYRG  110 (126)
T ss_dssp             EEEEESS
T ss_pred             EEEEEeC
Confidence            9999754

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=5.7e-12  Score=99.72  Aligned_cols=81  Identities=16%  Similarity=0.331  Sum_probs=68.9

Q ss_pred             CCCceEEEeecCCCCCCCeEEc---CC--c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhccC-c
Q psy6995         246 GSPAQELTLKRNGLGQLGFHVQ---PD--G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-L  315 (342)
Q Consensus       246 Gcet~El~LrR~~~gqLGFhV~---~E--G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~  315 (342)
                      ..+..++.|.|+. .+|||.+.   +.  + +|..|.++|+|+++| |++||+|  |||++|..++|++++++|+.+. .
T Consensus         9 ~~e~~~v~l~k~~-~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~~~~   87 (103)
T d1wfva_           9 DFDYFTVDMEKGA-KGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRR   87 (103)
T ss_dssp             CSCCEECCEECCT-TSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSE
T ss_pred             CceEEEEEEEeCC-CccCEEEEeeccCCCCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCE
Confidence            4567888899965 46999995   22  2 899999999999999 9999999  9999999999999999998654 7


Q ss_pred             EEEEEeCCCCCC
Q psy6995         316 VTVTVIPALSDG  327 (342)
Q Consensus       316 V~v~VipP~~dg  327 (342)
                      |+++|..|...+
T Consensus        88 v~l~v~R~~~s~   99 (103)
T d1wfva_          88 VRLLLKRGTGSG   99 (103)
T ss_dssp             ECEEEECTTCSS
T ss_pred             EEEEEEECCCCc
Confidence            999998876543

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=2.4e-11  Score=94.81  Aligned_cols=72  Identities=24%  Similarity=0.352  Sum_probs=59.7

Q ss_pred             CceEEEeecCCCCCCCeEEc-------CCc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc---
Q psy6995         248 PAQELTLKRNGLGQLGFHVQ-------PDG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS---  313 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~-------~EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts---  313 (342)
                      +.+.+++.+..  +|||.+.       ..+ ||++|.++|+|+++| |++||+|  |||+++..++|+|++++||.+   
T Consensus         8 ~~~~v~~~~~~--glG~~i~gg~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~   85 (96)
T d1wi4a1           8 AFRVITVTKET--GLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLR   85 (96)
T ss_dssp             TEEEEEECCSS--CCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCS
T ss_pred             cEEEEEecCCC--ccCEEEEeccCCCCCCCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCC
Confidence            45666677653  5999994       123 799999999999999 9999999  999999999999999999864   


Q ss_pred             --CcEEEEEe
Q psy6995         314 --SLVTVTVI  321 (342)
Q Consensus       314 --~~V~v~Vi  321 (342)
                        ..+++.++
T Consensus        86 ~~~~vel~~~   95 (96)
T d1wi4a1          86 SESPWEIAFI   95 (96)
T ss_dssp             SSSCEEEEEE
T ss_pred             CCCeEEEEEE
Confidence              34777665

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.6e-11  Score=98.72  Aligned_cols=75  Identities=27%  Similarity=0.328  Sum_probs=63.6

Q ss_pred             CceEEEeecCCCCCCCeEEcC----C-c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc---Cc
Q psy6995         248 PAQELTLKRNGLGQLGFHVQP----D-G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS---SL  315 (342)
Q Consensus       248 et~El~LrR~~~gqLGFhV~~----E-G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts---~~  315 (342)
                      +..+++|.|.. .+|||++..    + + ||.+|.++|+|+++| |++||+|  |||++|..++|++++++|+.+   ..
T Consensus        19 ~~~~v~l~k~~-~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~~g~~   97 (123)
T d1ueqa_          19 TFLSTTLKKSN-MGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQS   97 (123)
T ss_dssp             EEEEEEEECCT-TSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCE
T ss_pred             eEEEEEEEECC-CeeCEEEEeecCCCCCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCCCCCE
Confidence            45677788865 569999953    2 2 799999999999999 9999999  999999999999999999975   36


Q ss_pred             EEEEEeCC
Q psy6995         316 VTVTVIPA  323 (342)
Q Consensus       316 V~v~VipP  323 (342)
                      |+|+|..+
T Consensus        98 v~L~v~R~  105 (123)
T d1ueqa_          98 VNLVLCRG  105 (123)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEEcC
Confidence            88888654

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.4e-11  Score=96.19  Aligned_cols=74  Identities=30%  Similarity=0.429  Sum_probs=60.7

Q ss_pred             ceEEEeecCCCCCCCeEEcC-------------Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc
Q psy6995         249 AQELTLKRNGLGQLGFHVQP-------------DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT  312 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~-------------EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt  312 (342)
                      .+++.+++.....|||.+.+             .| ||++|.++|+|+++ |++||+|  |||++|..++|++++++|+.
T Consensus        10 ~~~v~v~~~~~~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~~~-L~~GD~Il~VNg~~v~~~t~~eav~~l~~   88 (103)
T d2h3la1          10 KQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKT   88 (103)
T ss_dssp             EEEEEEEEECSSSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             cEEEEEEEccCCCCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHHhc-cCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            34555555444679999941             13 69999999999987 9999999  99999999999999999997


Q ss_pred             cC-cEEEEEeCC
Q psy6995         313 SS-LVTVTVIPA  323 (342)
Q Consensus       313 s~-~V~v~VipP  323 (342)
                      +. .|+|+|..+
T Consensus        89 ~~~~v~L~V~R~  100 (103)
T d2h3la1          89 FQNTVELIIVRE  100 (103)
T ss_dssp             CCSEEEEEEEEE
T ss_pred             CCCeEEEEEEEE
Confidence            54 788888765

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=1.9e-11  Score=100.12  Aligned_cols=75  Identities=20%  Similarity=0.444  Sum_probs=64.2

Q ss_pred             ceEEEeecCCCCCCCeEEc-----CC----c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc--
Q psy6995         249 AQELTLKRNGLGQLGFHVQ-----PD----G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS--  313 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~-----~E----G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts--  313 (342)
                      +.++++.|.+...|||.+.     ..    | ||++|.++|+|+++| |++||+|  |||++|..++|+|++++||.+  
T Consensus        26 ~~~v~l~~~~~~glG~~i~gg~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~  105 (127)
T d1wg6a_          26 TLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMS  105 (127)
T ss_dssp             EEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEEccCCCCcEeEEEEeecCCCCCCcCCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhccc
Confidence            4566777877788999993     11    2 799999999999999 9999999  999999999999999999864  


Q ss_pred             ------CcEEEEEeCC
Q psy6995         314 ------SLVTVTVIPA  323 (342)
Q Consensus       314 ------~~V~v~VipP  323 (342)
                            ..|+|+|.+.
T Consensus       106 ~~~~~~~~V~L~V~R~  121 (127)
T d1wg6a_         106 MEGNIRGMIQLVILRR  121 (127)
T ss_dssp             HHHHHTCEEEEEEEEC
T ss_pred             ccCCCCCEEEEEEeeC
Confidence                  3689998864

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=2.5e-11  Score=96.00  Aligned_cols=75  Identities=17%  Similarity=0.260  Sum_probs=63.3

Q ss_pred             EeecCCCCCCCeEEcC----C-c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEEeCC
Q psy6995         253 TLKRNGLGQLGFHVQP----D-G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTVIPA  323 (342)
Q Consensus       253 ~LrR~~~gqLGFhV~~----E-G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~VipP  323 (342)
                      ++++.+...|||.+..    + + +|..|.++++|++++||+||+|  |||++|..++|+|++++|+.+. .|+|+|..+
T Consensus         8 ~v~~~g~~g~Gf~i~gg~d~~~~v~V~~v~~g~~a~~~~L~~GD~Il~INg~~v~~~t~~eav~li~~~~~~v~L~v~R~   87 (103)
T d1wf7a_           8 SVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRA   87 (103)
T ss_dssp             EEEEESSSCCSCCEEEETTTTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEECCC
T ss_pred             EEEEECCCCccEEEEcccCCCCCEEEEecCCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            3455666789999953    2 2 8899999999999999999999  9999999999999999999654 799988876


Q ss_pred             CCCC
Q psy6995         324 LSDG  327 (342)
Q Consensus       324 ~~dg  327 (342)
                      ...-
T Consensus        88 ~~~~   91 (103)
T d1wf7a_          88 SAAA   91 (103)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            5543

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.1e-10  Score=92.28  Aligned_cols=74  Identities=15%  Similarity=0.264  Sum_probs=59.8

Q ss_pred             ceEEEeecCCCCCCCeEEcC---C---c-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-----
Q psy6995         249 AQELTLKRNGLGQLGFHVQP---D---G-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-----  313 (342)
Q Consensus       249 t~El~LrR~~~gqLGFhV~~---E---G-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-----  313 (342)
                      ..-+.+++.. .+|||.+.+   .   + +|++|.++|+|+++| |++||||  |||++|..++|+|++++||.+     
T Consensus         7 ~~vv~~~k~~-~~lG~~i~gg~~~~~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~~~~   85 (103)
T d1ufxa_           7 GTLVRVKKSA-ATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKD   85 (103)
T ss_dssp             SEEEEEECCS-SSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSS
T ss_pred             CEEEEEEeCC-CccCEEEeeecCCCCCCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccCCCc
Confidence            3445566654 689999952   1   2 799999999999999 9999999  999999999999999999964     


Q ss_pred             -CcEEEEEeCC
Q psy6995         314 -SLVTVTVIPA  323 (342)
Q Consensus       314 -~~V~v~VipP  323 (342)
                       ..+++.|..+
T Consensus        86 ~~~~~l~v~~~   96 (103)
T d1ufxa_          86 RDYIDFLVTEF   96 (103)
T ss_dssp             CSEEEEEECCC
T ss_pred             cceEEEEEeCC
Confidence             3466666544

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=8.1e-11  Score=93.27  Aligned_cols=68  Identities=21%  Similarity=0.264  Sum_probs=59.1

Q ss_pred             CCCCCCCeEEcC--C---c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEEeCCC
Q psy6995         257 NGLGQLGFHVQP--D---G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTVIPAL  324 (342)
Q Consensus       257 ~~~gqLGFhV~~--E---G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~VipP~  324 (342)
                      ++...|||.+..  |   + ||..|.++++|+++||++||+|  |||++|..++|+|++++|+++. .|+|+|..+.
T Consensus        12 ~g~~~~Gf~l~gg~d~~~~i~V~~v~~g~~A~~~~L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~v~l~V~R~~   88 (103)
T d1v5la_          12 PGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE   88 (103)
T ss_dssp             ESSSCCSBCCEEETTTTEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCT
T ss_pred             ECCCCCCEEEEeecCCCCCEEEEEccCCChHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECC
Confidence            344679999953  2   2 8899999999999999999999  9999999999999999999764 7999888754

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.1e-09  Score=85.08  Aligned_cols=78  Identities=22%  Similarity=0.285  Sum_probs=59.0

Q ss_pred             CCceEEEeecCCCCCCCeEEcCCc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhcc---CcEEEEE
Q psy6995         247 SPAQELTLKRNGLGQLGFHVQPDG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTS---SLVTVTV  320 (342)
Q Consensus       247 cet~El~LrR~~~gqLGFhV~~EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts---~~V~v~V  320 (342)
                      .|...++|.|.. ..|||.+.+.- ...-+....+|..|||++||+|  |||++|..++|+|++++||..   ..|+|+|
T Consensus         9 ~e~~~v~l~k~~-~glGf~i~g~~~~~~~~~~~~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~~g~~v~l~v   87 (96)
T d1ujva_           9 AELMTLTIVKGA-QGFGFTIADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLII   87 (96)
T ss_dssp             CCCEEEEEECCS-SSSSEEEEEETTEEEEEEESCGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEE
T ss_pred             ceEEEEEEEeCC-CcccEEEEeeCCCceEeeccCcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEE
Confidence            356788899966 46999996431 1111233456667899999999  999999999999999999963   3688888


Q ss_pred             eCCCC
Q psy6995         321 IPALS  325 (342)
Q Consensus       321 ipP~~  325 (342)
                      -.+..
T Consensus        88 ~R~~~   92 (96)
T d1ujva_          88 HRGSG   92 (96)
T ss_dssp             ECCSS
T ss_pred             EECCC
Confidence            76543

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=98.98  E-value=2.2e-10  Score=88.33  Aligned_cols=67  Identities=22%  Similarity=0.255  Sum_probs=57.7

Q ss_pred             CCCCeEEcCC-----c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHh-ccC-cEEEEEeCCCCC
Q psy6995         260 GQLGFHVQPD-----G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLK-TSS-LVTVTVIPALSD  326 (342)
Q Consensus       260 gqLGFhV~~E-----G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLr-ts~-~V~v~VipP~~d  326 (342)
                      .++|+.+..+     + +|++|.++|+|++|||++||+|  |||+++..++|++++++|+ ... .|+|++..+..+
T Consensus         5 ~GiGi~i~~~~~~~~~v~V~~v~~gsPA~~AGl~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~g~~   81 (92)
T d1fc6a3           5 TGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAP   81 (92)
T ss_dssp             BBCSEEEEECTTCSSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTEE
T ss_pred             EEEEEEEEEcCCCCceEEEEEecCCCChhHHhhHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEECCCc
Confidence            5788888543     2 7999999999999999999999  9999999999999999998 333 699999887543

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=1.2e-09  Score=88.38  Aligned_cols=64  Identities=20%  Similarity=0.281  Sum_probs=54.9

Q ss_pred             CCCCCeEEcC-----Cc--eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhcc-----CcEEEEEeC
Q psy6995         259 LGQLGFHVQP-----DG--LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKTS-----SLVTVTVIP  322 (342)
Q Consensus       259 ~gqLGFhV~~-----EG--~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrts-----~~V~v~Vip  322 (342)
                      .++|||.+.+     .|  ||.+|.++|+|+++| |++||+|  |||++|..++|++++++|+.+     ..|+|+|..
T Consensus        27 ~~~lG~~i~gg~d~~~~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~~~V~L~v~r  105 (118)
T d1v6ba_          27 EGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAV  105 (118)
T ss_dssp             CSCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred             CCCCCEEEEeeecCCCCCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccCCCCEEEEEEEe
Confidence            3689999952     23  899999999999999 9999999  999999999999999999853     347777764

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.3e-09  Score=88.12  Aligned_cols=75  Identities=23%  Similarity=0.405  Sum_probs=59.9

Q ss_pred             CceEEEeecC-CCCCCCeEEcC-------Cc-eEEEEcccchhhhhC-CCCCCEE--eecccccCCCHHHHHHHHhc--c
Q psy6995         248 PAQELTLKRN-GLGQLGFHVQP-------DG-LVTEVEHMGLAYQEG-LKQGCRL--ICKVAVSTLSHDQMVDLLKT--S  313 (342)
Q Consensus       248 et~El~LrR~-~~gqLGFhV~~-------EG-~Vt~VE~~g~Ae~AG-LR~G~RL--Icg~sV~~lsHeq~vdlLrt--s  313 (342)
                      +..++.|.|. ....|||.|..       .| ||++|.++|+|+++| |++||+|  |||++|.  +|++++.+|+.  .
T Consensus        19 e~~~V~l~k~~~~~~lG~~i~~~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~--~~~~~~~~l~~~~~   96 (124)
T d1wh1a_          19 ELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSEEN   96 (124)
T ss_dssp             EECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHHHTCSSC
T ss_pred             eeEEEEEEECCCCCcccEEEEecCCCCCCCCEEEEEECCCChhhhhcccCCCCEEEEECCEECC--CHHHHHHHHhhCCC
Confidence            5667788885 45799999932       13 799999999999988 9999999  9999996  57788888874  3


Q ss_pred             CcEEEEEeCCC
Q psy6995         314 SLVTVTVIPAL  324 (342)
Q Consensus       314 ~~V~v~VipP~  324 (342)
                      ..|.++|..|.
T Consensus        97 ~~v~l~v~r~~  107 (124)
T d1wh1a_          97 KNFSLLIARPE  107 (124)
T ss_dssp             CSCCEEEEECS
T ss_pred             CcEEEEEEeCC
Confidence            36888887443

>d1srqa_ e.55.1.1 (A:) Rap1 GTPase-activating protein 1, Rap1GAP {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Rap/Ran-GAP
superfamily: Rap/Ran-GAP
family: Rap/Ran-GAP
domain: Rap1 GTPase-activating protein 1, Rap1GAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=4.7e-09  Score=99.26  Aligned_cols=40  Identities=35%  Similarity=0.516  Sum_probs=36.2

Q ss_pred             CCccccccccccCCCCceEEEEEEeeecccccccceeeEEEEEEec
Q psy6995          14 IPLEHQNWLGMDDNLGPVAISLKREKVEYTQESQQMYRYRLLIRTS   59 (342)
Q Consensus        14 ~~keHqN~fG~DE~LGPvavSi~rE~~e~~~~~~~~y~YRiiiRts   59 (342)
                      ++|+||||||+|++||||++||++|++++      ++.||+|+|+.
T Consensus        18 ~gk~h~ny~~~d~~lgpv~lSi~~e~~~~------~~~~r~ilrtk   57 (336)
T d1srqa_          18 LGKEHFNYYSLDTALGHLVFSLKYDVIGD------QEHLRLLLRTK   57 (336)
T ss_dssp             TTSSCEEEEEEETTTEEEEEEEEEEEETT------EEEEEEEEECS
T ss_pred             CCCccceeEeEcCcCCcEEEEEEEEecCC------ceeEEEEEEcC
Confidence            68999999999999999999999999983      46799999973

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.30  E-value=3.2e-07  Score=69.25  Aligned_cols=62  Identities=24%  Similarity=0.391  Sum_probs=49.6

Q ss_pred             CCCeEEcCC----c-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc---cCcEEEEEeCCC
Q psy6995         261 QLGFHVQPD----G-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT---SSLVTVTVIPAL  324 (342)
Q Consensus       261 qLGFhV~~E----G-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt---s~~V~v~VipP~  324 (342)
                      .||+.+..+    | +|++|.++++|++|||++||+|  |||++|.+  .+++...|+.   ...|+|+|..++
T Consensus         4 ~LGv~~~~~~~~~Gv~V~~V~~~spA~~aGl~~GD~I~~ing~~i~~--~~~~~~~i~~~~~g~~v~l~v~r~~   75 (88)
T d2z9ia1           4 SLGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINS--ADALVAAVRSKAPGATVALTFQDPS   75 (88)
T ss_dssp             ECCEEEECCC-CCSEEEEEECTTSTTGGGTCCTTCEEEEETTEECCS--HHHHHHHHHTSCTTCEEEEEEEETT
T ss_pred             EEeEEEEecCCCCcEEEEEECCCCHHHHcCCCCCCEEEEeCCCcCCc--HHHHHHHHHhCCCCCEEEEEEEECC
Confidence            467777443    3 8999999999999999999999  99999975  4666777753   237999998763

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=4.3e-07  Score=68.78  Aligned_cols=50  Identities=22%  Similarity=0.292  Sum_probs=43.7

Q ss_pred             eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccC-cEEEEEeC
Q psy6995         271 LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSS-LVTVTVIP  322 (342)
Q Consensus       271 ~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~-~V~v~Vip  322 (342)
                      +|++|+++++|++|||++||.|  |||++|.  +.+++..+|+... .|.|+|..
T Consensus        28 ~V~~V~~~spA~~aGl~~GDvI~~ing~~v~--~~~~~~~~l~~~~~~v~l~v~R   80 (88)
T d1ky9b2          28 VVNNVKTGTPAAQIGLKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQR   80 (88)
T ss_dssp             CBCCCCSSCTTGGGTCCSSCEEEEETTEECS--SHHHHHHHTTTCCSCCCEEEES
T ss_pred             EEEEECCCCHHHHcCCCCCcEEEEECCEEcC--CHHHHHHHHHhCCCEEEEEEEE
Confidence            7899999999999999999999  9999996  6799999998544 67777764

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.5e-06  Score=66.30  Aligned_cols=52  Identities=23%  Similarity=0.329  Sum_probs=45.8

Q ss_pred             Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhccCcEEEEEeC
Q psy6995         269 DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKTSSLVTVTVIP  322 (342)
Q Consensus       269 EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrts~~V~v~Vip  322 (342)
                      +| +|.+|.++++|++|||++||.|  |||+.|.  +.+++.+.|+....+.++|..
T Consensus        31 ~Gv~V~~V~~~spA~~aGl~~GDiI~~ing~~V~--s~~dl~~~l~~g~~v~l~v~R   85 (100)
T d1lcya1          31 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQ--NAEDVYEAVRTQSQLAVQIRR   85 (100)
T ss_dssp             SCEEEEEECTTSHHHHHTCCTTCEEEEETTEECC--SHHHHHHHHTTCSSEEEEEEE
T ss_pred             CcEEEEEECCCchHhhcCCCCCcEEEEECCEEcC--CHHHHHHHhcCCCEEEEEEEE
Confidence            45 7899999999999999999999  9999997  467899999987788888764

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.06  E-value=3.7e-06  Score=64.81  Aligned_cols=60  Identities=13%  Similarity=0.179  Sum_probs=47.7

Q ss_pred             eEEcCCc-eEEEEccc--------chhhhhCC-CCCCEE--eecccccCCCHHHHHHHHhcc--CcEEEEEeCCCC
Q psy6995         264 FHVQPDG-LVTEVEHM--------GLAYQEGL-KQGCRL--ICKVAVSTLSHDQMVDLLKTS--SLVTVTVIPALS  325 (342)
Q Consensus       264 FhV~~EG-~Vt~VE~~--------g~Ae~AGL-R~G~RL--Icg~sV~~lsHeq~vdlLrts--~~V~v~VipP~~  325 (342)
                      |.++.++ .|.+|-++        +||++||| |+||+|  |||++|...  ++++++|+..  ..|+|++..+..
T Consensus         7 ~~~~~~~~~I~~i~~G~~~~~~~~sPa~~aGl~k~GD~I~~IdG~~v~~~--~~~~~~l~g~~G~~V~L~i~R~g~   80 (91)
T d1k32a1           7 FKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAG--SNIYRVLSEKAGTSARIRLSGKGG   80 (91)
T ss_dssp             EEEETTEEEEEEECBSCTTSTTCBCGGGGGTCCCTTCEEEEETTEECBTT--BCHHHHHHTTTTSEEEEEEECSSS
T ss_pred             EEEECCeEEEEEEecCCCCCcccCChhHhcCCCCCCCEEEEECCEeecCc--ceeEEEEecCCCCEEEEEEEeCCC
Confidence            4555455 67888776        99999999 899999  999999865  4789999843  379999987643

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.81  E-value=2.3e-05  Score=60.97  Aligned_cols=66  Identities=23%  Similarity=0.198  Sum_probs=50.9

Q ss_pred             cCCc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc-c--CcEEEEE----------eCCCCCCCCC
Q psy6995         267 QPDG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT-S--SLVTVTV----------IPALSDGTPR  330 (342)
Q Consensus       267 ~~EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt-s--~~V~v~V----------ipP~~dg~PR  330 (342)
                      |++| +|.+|.++++|++| |++||+|  |||+.|.  +.+++.+.|+. .  ..|.|+|          ..|+..+.+.
T Consensus         1 ~p~Gv~V~~V~~~sPA~~~-L~~GD~I~~ing~~v~--~~~~l~~~i~~~~~G~~v~l~v~R~~~~~~l~~~p~~~~~~~   77 (103)
T d2hgaa1           1 QPDGVQIDSVVPGSPASKV-LTPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITTDQGTFHLKTGRNPNNSSRAY   77 (103)
T ss_dssp             CCCCEEEEEECSSSGGGGT-SCTTCEEEEETTEECS--SHHHHHHHHTTCCTTCEEEEEETTEEEEEECCBCSSSCCSCB
T ss_pred             CCCcEEEEEECCCChHHhc-CCCCCEEEEECCEEcC--CHHHHHHHHhhCCCCCEEEEEEEECCEEEEEEeccCCCCceE
Confidence            4566 79999999999976 9999999  9999997  58899999974 2  2466554          4566667776


Q ss_pred             cCCCc
Q psy6995         331 RYADL  335 (342)
Q Consensus       331 Rgc~~  335 (342)
                      -|...
T Consensus        78 iGi~~   82 (103)
T d2hgaa1          78 MGIRT   82 (103)
T ss_dssp             CCEEE
T ss_pred             EEEEe
Confidence            66543

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=3e-06  Score=64.60  Aligned_cols=52  Identities=21%  Similarity=0.311  Sum_probs=42.3

Q ss_pred             Cc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHhc---cCcEEEEEeC
Q psy6995         269 DG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLKT---SSLVTVTVIP  322 (342)
Q Consensus       269 EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLrt---s~~V~v~Vip  322 (342)
                      +| +|++|.++++|++|||++||.|  |||++|.+..  ++.++|..   ...+.|.|..
T Consensus        27 ~Gv~V~~V~~~spA~~aGl~~gDvI~~i~g~~v~~~~--~l~~~l~~~~~g~~v~l~v~R   84 (94)
T d1ky9a1          27 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFA--ALRAQVGTMPVGSKLTLGLLR   84 (94)
T ss_dssp             CSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSSH--HHHHHTTSSBTTCCCEEEEES
T ss_pred             CCcEEEECCCChhHHHhCCCcccEEEEECCEEeCCHH--HHHHHHHhCCCCCEEEEEEEE
Confidence            46 7889999999999999999999  9999998754  56666653   3368888876

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=7.6e-06  Score=62.96  Aligned_cols=59  Identities=20%  Similarity=0.254  Sum_probs=39.9

Q ss_pred             CCCeEEcCCc-eEEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHHh---ccCcEEEEEeC
Q psy6995         261 QLGFHVQPDG-LVTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLLK---TSSLVTVTVIP  322 (342)
Q Consensus       261 qLGFhV~~EG-~Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlLr---ts~~V~v~Vip  322 (342)
                      .+|... .+| +|.+|.++++|++|||++||.|  |||+.|.+.  +++.+.|+   ....+.++++.
T Consensus        19 ~~gl~~-~~Gv~V~~V~~~spA~~aGl~~GDiI~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R   83 (99)
T d1sota1          19 GGGIDQ-LQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISA--LETMDQVAEIRPGSVIPVVVMR   83 (99)
T ss_dssp             ---------CEECCCCCSSSTTTSSSCCTTCEECBSSSSBCCCS--HHHHHHHHHSCTTCEEEECC--
T ss_pred             HcCCCC-CCccEEEEecCCCCHHHcCCCcceEEEEECCEecccH--HHHHHHHHcCCCCCEEEEEEEE
Confidence            455553 355 7889999999999999999999  999999875  45556664   33467777765

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=97.22  E-value=9.9e-05  Score=55.73  Aligned_cols=49  Identities=18%  Similarity=0.161  Sum_probs=39.3

Q ss_pred             EEEEcccchhhhhCCCCCCEE--eecccccCCCHHHHHHHH---hccCcEEEEEeC
Q psy6995         272 VTEVEHMGLAYQEGLKQGCRL--ICKVAVSTLSHDQMVDLL---KTSSLVTVTVIP  322 (342)
Q Consensus       272 Vt~VE~~g~Ae~AGLR~G~RL--Icg~sV~~lsHeq~vdlL---rts~~V~v~Vip  322 (342)
                      |..|.++++|++|||++||.|  |||++|.+.  +++.+++   +....+.+++..
T Consensus        23 v~~v~~~s~~~~aGl~~GDiI~~ing~~v~~~--~~~~~~~~~~~~~~~~~l~v~R   76 (87)
T d2i6va1          23 VSPGKDPVLFESIGLQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVER   76 (87)
T ss_dssp             EEECSCHHHHHHTTCCTTCEEEEETTEETTCH--HHHHHHHHTGGGCSEEEEEEEE
T ss_pred             EecCCCCCHHHHCCCCCCCEEEEECCEEeecH--HHHHHHHHhhccccccEEEEEE
Confidence            457999999999999999999  999999864  4555665   445578888775

>d1mixa2 b.55.1.5 (A:309-400) Talin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Third domain of FERM
domain: Talin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.80  E-value=0.0039  Score=47.33  Aligned_cols=83  Identities=16%  Similarity=0.312  Sum_probs=61.9

Q ss_pred             eeeEEEEEeccCCCCeeeeeeeeeccceEEEEEccCCcEEEeeeccceeeecccCCcEEEEeecCc--eEEEEecCCCCC
Q psy6995         151 GAICWQVSLEDSKTGSLMHCVLAISTDSVVLVEEQSRDLVFVAPAKSVLGWATSTNSLRLYHHQGE--VTRIHMREGGGG  228 (342)
Q Consensus       151 GAl~W~V~v~D~s~~~~i~ClLGIS~e~lVLIe~~s~~VVFncpc~dVIGWt~s~~~LkIyY~rGE--~i~l~~~e~~~~  228 (342)
                      |+-...|...-.+.....+|+|||+.+.|.|+++.+++++...|-.+|.=|...++...+=.++-.  ...+.+.     
T Consensus         1 G~~fF~vk~~~~~~~~~~~~lLav~~~gv~lld~~t~~~l~~~py~~Ir~~g~~~~~F~~~~G~~~~g~~~f~T~-----   75 (92)
T d1mixa2           1 GVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSFTLDFGDYQDGYYSVQTT-----   75 (92)
T ss_dssp             TCEEEEEEECCSSCSSCEEEEEEECSSEEEEEETTTCCEEEEEEGGGCCEEEECSSEEEEECGGGSSSCEEEECS-----
T ss_pred             CCceEEEEEEecCCCCCCCEEEEECcceEEEEcCCCCceEEEcchhheeeccCCCCEEEEEECCCcceEEEEEeC-----
Confidence            455666755444455557899999999999999999999999999999999988777666555422  2334443     


Q ss_pred             ChhhHHHHHH
Q psy6995         229 DRDELMEVVV  238 (342)
Q Consensus       229 ~~edl~EIV~  238 (342)
                      ++++|-.+|+
T Consensus        76 q~~eI~~li~   85 (92)
T d1mixa2          76 EGEQIAQLIA   85 (92)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            4588877775