Psyllid ID: psy7028

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------

MKERERTVIGKKNQMWERRLMKNFQLTPVVTAEDEVELVRNVEPAENEDPLDRFRRVAKLAVLNSTVIGKKNQMWERRLMKNFQLTPVVTAEDEVELELRKQCQQFAVDLLQQSRSTQELLTVLNHDPETPYEEGEPMKLTRLELAIDYKQKRCLDCEILLLLVSQRADVILLEYLGVTDNHITGQQRGLAPSYLEYLVLLYVAGYIWEETCEVWKDGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFDPQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWASFGSTGTDKFELKGIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIEVGVEIEGPGIVHTQPFDMPNLPTPLTLEEKKYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLRESNEDSLRHSMSRVNEYRALASPSLIALSSNDPILTAFQLSWELRNLAFTEPECRNEYMELRKQCQQFAVDLLQQSRSTQELLTVLNHDPETPYEEGEPMKLTRLELAIDYKQKRFVAHSNIQQLLAAMWYDGLPGFRRKPLLEKLLDLSKIILIFPYY

ccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccc

cccHHHHHHHHHHHHHHHHHHHHccEcccccccHHHHHHHHccccccccHHHHHHHHHHHHHEEHccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHEEEcccccccccccccccHHHHHHHHHHHHcHHcccHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccHEccccccccccccccHHHHHHHccHHHHHHHHHHcccccccccccEEccHHHHccccccccHccHHHHHHHHHHHcHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHEEEcccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccc

mkerertvigkkNQMWERRLMknfqltpvvtaedevelvrnvepaenedpldRFRRVAKLAVLNSTVIGKKNQMWERRLMknfqltpvvtaeDEVELELRKQCQQFAVDLLQQSRSTQELLTVlnhdpetpyeegepmkLTRLELAIDYKQKRCLDCEILLLLVSQRADVILLEYlgvtdnhitgqqrglapSYLEYLVLLYVAGYIWEETCEVWKDGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANesskflgrehwnafdpQLIAEGLFAGANVFSALKLVHLFSinphlgplqisLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTElerkdcystmsstgalnpsedpnweehdAACSKWRSFNNLFESSQSLFWasfgstgtdkfelKGIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIEVGVeiegpgivhtqpfdmpnlptpltleEKKYLLSVERgdtatswekvdkntsmftkdiTPLILAAHKNNYEILKILLDrgatlpmphdvrcgcdtclresneDSLRHSMSRVNEYRalaspslialssndpiLTAFQLSWELRnlaftepeCRNEYMELRKQCQQFAVDLLQQSRSTQELLTVlnhdpetpyeegepmkLTRLELAIDYKQKRFVAHSNIQQLLAAMWydglpgfrrkpLLEKLLDLSKIILIFPYY

mkerertvigkknqmwerrlmknfqltpvvtaedevelvrnvepaenedpldrfRRVAKLavlnstvigkknqmwerRLMKNFQLTPVVTAEDEVELELRKQCQQFAVDLLQQSRSTQELLtvlnhdpetpyeegepmkLTRLELAIDYKQKRCLDCEILLLLVSQRADVILLEYLGVTDNHITGQQRGLAPSYLEYLVLLYVAGYIWEETCEVWKDGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFDPQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWASFGSTGTDKFELKGIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIEVGVEIEGPGIVHTQPFDMPNLPTPLTLEEKKYLLSVErgdtatswekvdkntsmfTKDITPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLRESNEDSLRHSMSRVNEYRALASPSLIALSSNDPILTAFQLSWELRNLAFTEPECRNEYMELRKQCQQFAVDLLQQSRSTQELLtvlnhdpetpyeegepmKLTRLELAIDYKQKRFVAHSNIQQLLAAMWYDGLPGFRRKPLLeklldlskiilifpyy

MKERERTVIGKKNQMWERRLMKNFQLTPVVTAEDEVELVRNVEPAENEDPLDRFRRVAKLAVLNSTVIGKKNQMWERRLMKNFQLTPVVTAEDEVELELRKQCQQFAVDLLQQSRSTQELLTVLNHDPETPYEEGEPMKLTRLELAIDYKQKRCLDCEILLLLVSQRADVILLEYLGVTDNHITGQQRGLAPSYLEYLVLLYVAGYIWEETCEVWKDGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFDPQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWASFGSTGTDKFELKGIKSYTRFWGLLMFGSYSvinvivllnlliAMMSNSYAMIEVGVEIEGPGIVHTQPFDMPNLPTPLTLEEKKYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLRESNEDSLRHSMSRVNEYRalaspslialssNDPILTAFQLSWELRNLAFTEPECRNEYMELRKQCQQFAVDLLQQSRSTQELLTVLNHDPETPYEEGEPMKLTRLELAIDYKQKRFVAHSNIQQLLAAMWYDGLPGFRRKPLLEKLLDLSKIILIFPYY

**************MWERRLMKNFQLTPVVTAEDEVELVRN*********LDRFRRVAKLAVLNSTVIGKKNQMWERRLMKNFQLTPVVTAEDEVELELRKQCQQFAVDLLQ*******LLTVL**************KLTRLELAIDYKQKRCLDCEILLLLVSQRADVILLEYLGVTDNHITGQQRGLAPSYLEYLVLLYVAGYIWEETCEVWKDGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFDPQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDCYS*******************DAACSKWRSFNNLFESSQSLFWASFGSTGTDKFELKGIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIEVGVEIEGPGIVHTQPFDMPNLPTPLTLEEKKYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLR****************YRALASPSLIALSSNDPILTAFQLSWELRNLAFTEPECRNEYMELRKQCQQFAVDLLQQ******LLTVL**************KLTRLELAIDYKQKRFVAHSNIQQLLAAMWYDGLPGFRRKPLLEKLLDLSKIILIFPY*

*************QMWERRLMKNFQLTPV***************************VAKLAVLNSTVIGKKNQMWERRLMKNFQLTPVVTAEDEVELELRKQCQQFAVDLLQQSRSTQELLTVLNH**************TRLELAIDYKQKRCLDCEILLLLVSQRADVILLEYLGVTDNHITGQQRGLAPSYLEYLVLLYVAGYIWEETCEVWKDGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFDPQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWASFGSTGTDKFELKGIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIEVGVEIEGPGIVHTQPFDMPNLPTPLTLEEKKYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLRESNEDSLRHSMSRVNEYRALASPSLIALSSNDPILTAFQLSWELRNLAFTEPECRNEYMELRKQCQQFAVDLLQQSRSTQELLTVLNHDPET********KLTRLELAIDYKQKRFVAHSNIQQLLAAMWYDGLPGFRRKPLLEKLLDLSKIILIFPYY

*********GKKNQMWERRLMKNFQLTPVVTAEDEVELVRNVEPAENEDPLDRFRRVAKLAVLNSTVIGKKNQMWERRLMKNFQLTPVVTAEDEVELELRKQCQQFAVDLLQQSRSTQELLTVLNHDPETPYEEGEPMKLTRLELAIDYKQKRCLDCEILLLLVSQRADVILLEYLGVTDNHITGQQRGLAPSYLEYLVLLYVAGYIWEETCEVWKDGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFDPQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWASFGSTGTDKFELKGIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIEVGVEIEGPGIVHTQPFDMPNLPTPLTLEEKKYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLRESNEDSLRHSMSRVNEYRALASPSLIALSSNDPILTAFQLSWELRNLAFTEPECRNEYMELRKQCQQFAVDLLQQSRSTQELLTVLNHDPETPYEEGEPMKLTRLELAIDYKQKRFVAHSNIQQLLAAMWYDGLPGFRRKPLLEKLLDLSKIILIFPYY

*KERERTVIGKKNQMWERRLMKNFQLTPVVTAEDEVELVRNVEPAENEDPLDRFRRVAKLAVLNSTVIGKKNQMWERRLMKNFQLTPVVTAEDEVELELRKQCQQFAVDLLQQSRSTQELLTVLNHDPETPYEEGEPMKLTRLELAIDYKQKRCLDCEILLLLVSQRADVILLEYLGVTDNHITGQQRGLAPSYLEYLVLLYVAGYIWEETCEVWKDGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFDPQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWASFGSTGTDKFELKGIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIEVGVEIEGPGIVHTQPFDMPNLPTPLTLEEKKYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLRESNEDSLRHSMSRVNEYRALASPSLIALSSNDPILTAFQLSWELRNLAFTEPECRNEYMELRKQCQQFAVDLLQQSRSTQELLTVLNHDPETPYEEGEPMKLTRLELAIDYKQKRFVAHSNIQQLLAAMWYDGLPGFRRKPLLEKLLDLSKIILIFPYY

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		707	2.2.26 [Sep-21-2011]
P48994		1124	Transient-receptor-potent	yes	N/A	0.398	0.250	0.654	1e-109
Q9VJJ7		1128	Transient receptor potent	no	N/A	0.410	0.257	0.509	1e-87
P19334		1275	Transient receptor potent	no	N/A	0.370	0.205	0.540	1e-76
Q9QUQ5		974	Short transient receptor	yes	N/A	0.298	0.216	0.566	4e-62
O35119		977	Short transient receptor	no	N/A	0.298	0.215	0.566	4e-62
Q9UBN4		977	Short transient receptor	yes	N/A	0.298	0.215	0.566	5e-62
P79100		979	Short transient receptor	yes	N/A	0.298	0.215	0.561	6e-62
Q9UL62		973	Short transient receptor	no	N/A	0.315	0.229	0.537	9e-60
Q9QX29		975	Short transient receptor	no	N/A	0.294	0.213	0.556	1e-59
O62852		974	Short transient receptor	no	N/A	0.294	0.213	0.556	1e-59

>sp\|P48994\|TRPL_DROME Transient-receptor-potential-like protein OS=Drosophila melanogaster GN=trpl PE=1 SV=2	Back alignment and function desciption

 Score =  394 bits (1013), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/295 (65%), Positives = 220/295 (74%), Gaps = 13/295 (4%)

Query: 160 LLLLVSQRADVILLEYLGVT--DNHITGQ---QRGLAPSYLEYLVLLYVAGYIWEETCEV 214
           +L+LVSQRAD   +   G T     +  Q   QRG  PS LE +V++YV G++WEE  E+
Sbjct: 390 ILILVSQRADDDFVRIFGTTRMKKELAEQELRQRGQTPSKLELIVVMYVIGFVWEEVQEI 449

Query: 215 WKDGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFD 274
           +  G+  YL++MWNFIDF RN LYV V  LRA AY+QQ  EI  +    ++ RE W+ FD
Sbjct: 450 FAVGMKSYLRNMWNFIDFLRNSLYVSVMCLRAFAYIQQATEIARDPQMAYIPREKWHDFD 509

Query: 275 PQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFAC 334
           PQLIAEGLFA ANVFSALKLVHLFSINPHLGPLQISLGRM+IDIVKFFFIYTLVL +FAC
Sbjct: 510 PQLIAEGLFAAANVFSALKLVHLFSINPHLGPLQISLGRMVIDIVKFFFIYTLVLFAFAC 569

Query: 335 GLNQLLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFW 394
           GLNQLLWYF  LE+  CY        + P  + +W  H  +C KWR F NLFESSQSLFW
Sbjct: 570 GLNQLLWYFAALEKSKCY--------VLPGGEADWGSHGDSCMKWRRFGNLFESSQSLFW 621

Query: 395 ASFGSTGTDKFELKGIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIE 449
           ASFG  G D FEL GIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMI+
Sbjct: 622 ASFGMVGLDDFELSGIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMID 676

A light-sensitive calcium channel that is required for inositide-mediated Ca(2+) entry in the retina during phospholipase C (PLC)-mediated phototransduction. Required for vision in the dark and in dim light. Binds calmodulin. Trp and trpl act together in the light response, although it is unclear whether as heteromultimers or distinct units. Also forms a functional cation channel with trp-gamma. Activated by fatty acids, metabolic stress, inositols and GTP-binding proteins.
Drosophila melanogaster (taxid: 7227)

>sp\|Q9VJJ7\|TRPG_DROME Transient receptor potential-gamma protein OS=Drosophila melanogaster GN=trpgamma PE=1 SV=2	Back alignment and function description

>sp\|P19334\|TRP_DROME Transient receptor potential protein OS=Drosophila melanogaster GN=trp PE=1 SV=3	Back alignment and function description

>sp\|Q9QUQ5\|TRPC4_MOUSE Short transient receptor potential channel 4 OS=Mus musculus GN=Trpc4 PE=1 SV=1	Back alignment and function description

>sp\|O35119\|TRPC4_RAT Short transient receptor potential channel 4 OS=Rattus norvegicus GN=Trpc4 PE=1 SV=2	Back alignment and function description

>sp\|Q9UBN4\|TRPC4_HUMAN Short transient receptor potential channel 4 OS=Homo sapiens GN=TRPC4 PE=1 SV=1	Back alignment and function description

>sp\|P79100\|TRPC4_BOVIN Short transient receptor potential channel 4 OS=Bos taurus GN=TRPC4 PE=2 SV=2	Back alignment and function description

>sp\|Q9UL62\|TRPC5_HUMAN Short transient receptor potential channel 5 OS=Homo sapiens GN=TRPC5 PE=1 SV=1	Back alignment and function description

>sp\|Q9QX29\|TRPC5_MOUSE Short transient receptor potential channel 5 OS=Mus musculus GN=Trpc5 PE=1 SV=2	Back alignment and function description

>sp\|O62852\|TRPC5_RABIT Short transient receptor potential channel 5 OS=Oryctolagus cuniculus GN=TRPC5 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		707
307199979		1243	Transient-receptor-potential-like protei	0.397	0.226	0.677	1e-113
322793221		1134	hypothetical protein SINV_04889 [Solenop	0.405	0.253	0.664	1e-112
332016436		1193	Transient-receptor-potential-like protei	0.397	0.235	0.671	1e-111
158284739		1081	AGAP010630-PA [Anopheles gambiae str. PE	0.487	0.319	0.556	1e-111
170038655		1295	calmodulin-binding protein trpl [Culex q	0.401	0.219	0.649	1e-111
350413466		1091	PREDICTED: transient-receptor-potential-	0.397	0.257	0.650	1e-110
307180174		782	Transient-receptor-potential-like protei	0.397	0.359	0.667	1e-110
380014963		1085	PREDICTED: transient-receptor-potential-	0.396	0.258	0.655	1e-109
328782400		933	PREDICTED: LOW QUALITY PROTEIN: transien	0.396	0.300	0.655	1e-109
195124505		1128	GI18427 [Drosophila mojavensis] gi\|19391	0.455	0.285	0.605	1e-108

>gi\|307199979\|gb\|EFN80329.1\| Transient-receptor-potential-like protein [Harpegnathos saltator]	Back alignment and taxonomy information

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/295 (67%), Positives = 233/295 (78%), Gaps = 14/295 (4%)

Query: 160 LLLLVSQRADVILLEYLGVTD-----NHITGQQRGLAPSYLEYLVLLYVAGYIWEETCEV 214
           +L+LVSQRA+V ++  LG  +          +QRG AP+ LE +V+LYV G+IWEE  EV
Sbjct: 444 VLMLVSQRAEVEIVRLLGTQEMKRNLEAYLARQRGAAPTPLEGIVVLYVTGFIWEEIREV 503

Query: 215 WKDGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFD 274
           + DGL  YL+DMWNFIDFTRN+LY+   +LR  AY+QQ++EI +N S+  + RE+W  FD
Sbjct: 504 YVDGLKAYLRDMWNFIDFTRNMLYLATGLLRLAAYLQQRSEIRSNPSAALIPRENWGDFD 563

Query: 275 PQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFAC 334
           PQLIAEGLFA ANVFSALKLVHLFSINPHLGPLQISLGRM+IDIVKFFFIY+LVL +FAC
Sbjct: 564 PQLIAEGLFAAANVFSALKLVHLFSINPHLGPLQISLGRMVIDIVKFFFIYSLVLFAFAC 623

Query: 335 GLNQLLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFW 394
           GLNQLLWYF ELER+ CYS MS         DP+W+    AC +WR F+NLFES QSLFW
Sbjct: 624 GLNQLLWYFAELERRKCYSGMS---------DPSWDAGSDACLRWRRFSNLFESCQSLFW 674

Query: 395 ASFGSTGTDKFELKGIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIE 449
           ASFG  G + FEL GIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYA+IE
Sbjct: 675 ASFGMVGIEAFELTGIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAVIE 729

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|322793221\|gb\|EFZ16878.1\| hypothetical protein SINV_04889 [Solenopsis invicta]	Back alignment and taxonomy information

>gi\|332016436\|gb\|EGI57349.1\| Transient-receptor-potential-like protein [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|158284739\|ref\|XP_307827.4\| AGAP010630-PA [Anopheles gambiae str. PEST] gi\|157020898\|gb\|EAA03611.5\| AGAP010630-PA [Anopheles gambiae str. PEST]	Back alignment and taxonomy information

>gi\|170038655\|ref\|XP_001847164.1\| calmodulin-binding protein trpl [Culex quinquefasciatus] gi\|167882363\|gb\|EDS45746.1\| calmodulin-binding protein trpl [Culex quinquefasciatus]	Back alignment and taxonomy information

>gi\|350413466\|ref\|XP_003490000.1\| PREDICTED: transient-receptor-potential-like protein-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|307180174\|gb\|EFN68207.1\| Transient-receptor-potential-like protein [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|380014963\|ref\|XP_003691482.1\| PREDICTED: transient-receptor-potential-like protein-like [Apis florea]	Back alignment and taxonomy information

>gi\|328782400\|ref\|XP_003250136.1\| PREDICTED: LOW QUALITY PROTEIN: transient-receptor-potential-like protein [Apis mellifera]	Back alignment and taxonomy information

>gi\|195124505\|ref\|XP_002006733.1\| GI18427 [Drosophila mojavensis] gi\|193911801\|gb\|EDW10668.1\| GI18427 [Drosophila mojavensis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		707
FB\|FBgn0005614		1124	trpl "trp-like" [Drosophila me	0.473	0.298	0.540	1.5e-108
FB\|FBgn0032593		1128	trpgamma "trpgamma" [Drosophil	0.410	0.257	0.476	5.8e-87
FB\|FBgn0003861		1275	trp "transient receptor potent	0.369	0.204	0.505	6.8e-77
WB\|WBGene00006615		886	trp-2 [Caenorhabditis elegans	0.411	0.328	0.415	4e-69
UNIPROTKB\|Q3MHB9		460	TRPC4 "TRPC4 protein" [Homo sa	0.298	0.458	0.509	1.1e-54
UNIPROTKB\|E1C0Y0		890	TRPC4 "Uncharacterized protein	0.298	0.237	0.514	2.4e-54
UNIPROTKB\|F1NP71		975	TRPC4 "Uncharacterized protein	0.298	0.216	0.514	5.9e-54
UNIPROTKB\|E1C452		766	TRPC5 "Uncharacterized protein	0.294	0.271	0.509	9.6e-54
UNIPROTKB\|Q91ZM0		893	Trpc4 "Short transient recepto	0.298	0.236	0.509	2.4e-53
UNIPROTKB\|E2QUL7		946	TRPC4 "Uncharacterized protein	0.298	0.223	0.509	4.2e-53

FB\|FBgn0005614 trpl "trp-like" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 914 (326.8 bits), Expect = 1.5e-108, Sum P(2) = 1.5e-108
 Identities = 194/359 (54%), Positives = 232/359 (64%)

Query:   160 LLLLVSQRADVILLEYLGVT--DNHITGQ---QRGLAPSYLEYLVLLYVAGYIWEETCEV 214
             +L+LVSQRAD   +   G T     +  Q   QRG  PS LE +V++YV G++WEE  E+
Sbjct:   390 ILILVSQRADDDFVRIFGTTRMKKELAEQELRQRGQTPSKLELIVVMYVIGFVWEEVQEI 449

Query:   215 WKDGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFD 274
             +  G+  YL++MWNFIDF RN LYV V  LRA AY+QQ  EI  +    ++ RE W+ FD
Sbjct:   450 FAVGMKSYLRNMWNFIDFLRNSLYVSVMCLRAFAYIQQATEIARDPQMAYIPREKWHDFD 509

Query:   275 PQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFAC 334
             PQLIAEGLFA ANVFSALKLVHLFSINPHLGPLQISLGRM+IDIVKFFFIYTLVL +FAC
Sbjct:   510 PQLIAEGLFAAANVFSALKLVHLFSINPHLGPLQISLGRMVIDIVKFFFIYTLVLFAFAC 569

Query:   335 GLNQLLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFW 394
             GLNQLLWYF  LE+  CY        + P  + +W  H  +C KWR F NLFESSQSLFW
Sbjct:   570 GLNQLLWYFAALEKSKCY--------VLPGGEADWGSHGDSCMKWRRFGNLFESSQSLFW 621

Query:   395 ASFGSTGTDKFELKGIKSYTRFWGLLMFGSYSXXXXXXXXXXXXAMMSNSYAMIEVGVEI 454
             ASFG  G D FEL GIKSYTRFWGLLMFGSYS            AMMSNSYAMI+   + 
Sbjct:   622 ASFGMVGLDDFELSGIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIDEHSDT 681

Query:   455 EGPGIVHTQPF-----DMPNLPTPLT-LEEKKYLLSVERGDTATSWEKVDKNTSMFTKD 507
             E      T+ +     D   LP P   L   K+++ + R  + T    +D+  S   K+
Sbjct:   682 EWK-FARTKLWMSYFEDSATLPPPFNVLPSVKWVIRIFRKSSKT----IDRQRSKKRKE 735

GO:0005516 "calmodulin binding" evidence=ISS;NAS;IDA;TAS

GO:0005886 "plasma membrane" evidence=ISS;IDA;TAS

GO:0008086 "light-activated voltage-gated calcium channel activity" evidence=NAS;IMP

GO:0007603 "phototransduction, visible light" evidence=IMP

GO:0035997 "rhabdomere microvillus membrane" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0016028 "rhabdomere" evidence=IDA;NAS;TAS

GO:0009416 "response to light stimulus" evidence=TAS

GO:0019722 "calcium-mediated signaling" evidence=IMP;TAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0005262 "calcium channel activity" evidence=IGI;ISS;IDA

GO:0006816 "calcium ion transport" evidence=ISS;IDA

GO:0070588 "calcium ion transmembrane transport" evidence=IGI

GO:0071454 "cellular response to anoxia" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0016027 "inaD signaling complex" evidence=IPI

GO:0005261 "cation channel activity" evidence=TAS

GO:0015279 "store-operated calcium channel activity" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0007589 "body fluid secretion" evidence=IMP

GO:0007605 "sensory perception of sound" evidence=IMP

FB\|FBgn0032593 trpgamma "trpgamma" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0003861 trp "transient receptor potential" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

WB\|WBGene00006615 trp-2 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3MHB9 TRPC4 "TRPC4 protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C0Y0 TRPC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NP71 TRPC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C452 TRPC5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q91ZM0 Trpc4 "Short transient receptor potential channel 4" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QUL7 TRPC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		707
TIGR00870		743	TIGR00870, trp, transient-receptor-potential calci	5e-73
TIGR00870		743	TIGR00870, trp, transient-receptor-potential calci	2e-66
pfam08344		63	pfam08344, TRP_2, Transient receptor ion channel I	2e-32
pfam00520		194	pfam00520, Ion_trans, Ion transport protein	4e-22
pfam08016		423	pfam08016, PKD_channel, Polycystin cation channel	2e-07
pfam00023		33	pfam00023, Ank, Ankyrin repeat	2e-04
smart00248		30	smart00248, ANK, ankyrin repeats	0.002

>gnl\|CDD\|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein	Back alignment and domain information

 Score =  251 bits (642), Expect = 5e-73
 Identities = 110/291 (37%), Positives = 154/291 (52%), Gaps = 37/291 (12%)

Query: 160 LLLLVSQRADVILLEYLGVTDNHITGQQRGLAPSYLEYLVLLYVAGYIWEETCEVWKDGL 219
           L++  S          L V          GL  + LE L++ +V G    E   +W  G+
Sbjct: 365 LIIFTSVAYYRPTRTDLRV---------TGLQQTPLEMLIVTWVDGLRLGEEKLIWLGGI 415

Query: 220 YRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFDPQLIA 279
           + Y+  +WN +DF  N  Y+  F+ R  A +         ++   L REHW  FDP LI 
Sbjct: 416 FEYIHQLWNILDFGMNSFYLATFLDRPFAILF------VTQAFLVL-REHWLRFDPTLIE 468

Query: 280 EGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMII-DIVKFFFIYTLVLLSFACGLNQ 338
           E LFA A V S L L+++F  N HLGPLQI +GRMI+ DI++F FIY +VL  FACGLNQ
Sbjct: 469 EALFAFALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQ 528

Query: 339 LLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWASFG 398
           L  Y+ EL+  +C +  + +                   +  +++ LFE+SQ LFWA  G
Sbjct: 529 LYQYYDELKLNECSNPHARS----------------CEKQGNAYSTLFETSQELFWAIIG 572

Query: 399 STGTDKFELKGIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIE 449
               D   L     +T F GLL+FG+Y+VI  I+LLN+LIAMM N+Y +I 
Sbjct: 573 --LGDL--LANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIA 619

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl\|CDD\|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein	Back alignment and domain information

>gnl\|CDD\|149414 pfam08344, TRP_2, Transient receptor ion channel II	Back alignment and domain information

>gnl\|CDD\|215968 pfam00520, Ion_trans, Ion transport protein	Back alignment and domain information

>gnl\|CDD\|219699 pfam08016, PKD_channel, Polycystin cation channel	Back alignment and domain information

>gnl\|CDD\|200936 pfam00023, Ank, Ankyrin repeat	Back alignment and domain information

>gnl\|CDD\|197603 smart00248, ANK, ankyrin repeats	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		707
KOG3609\|consensus		822		100.0
TIGR00870		743	trp transient-receptor-potential calcium channel p	100.0
KOG3609\|consensus		822		100.0
KOG3614\|consensus		1381		100.0
PLN03223		1634	Polycystin cation channel protein; Provisional	99.95
KOG3676\|consensus		782		99.92
PF08016		425	PKD_channel: Polycystin cation channel; InterPro:	99.88
KOG3614\|consensus		1381		99.87
KOG3599\|consensus		798		99.84
PF08344		63	TRP_2: Transient receptor ion channel II; InterPro	99.84
TIGR00870		743	trp transient-receptor-potential calcium channel p	99.73
KOG0510\|consensus		929		99.65
PF00520		200	Ion_trans: Ion transport protein calcium channel s	99.64
KOG2301\|consensus		1592		99.58
KOG2302\|consensus		1956		99.24
KOG2302\|consensus		1956		99.02
KOG2301\|consensus		1592		98.97
PF08344		63	TRP_2: Transient receptor ion channel II; InterPro	98.78
KOG3733\|consensus		566		97.65
KOG3713\|consensus		477		96.95
KOG1545\|consensus		507		95.89
KOG0498\|consensus		727		92.92
PF13606		30	Ank_3: Ankyrin repeat	89.06
PF00023		33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	88.73
PLN03192		823	Voltage-dependent potassium channel; Provisional	85.79

>KOG3609\|consensus	Back alignment and domain information

Probab=100.00  E-value=1.2e-88  Score=760.30  Aligned_cols=400  Identities=39%  Similarity=0.620  Sum_probs=352.5

Q ss_pred             hhHHHHHHHHhhhcccccccccchHhHHHHhHHh----hhhhhcccHHH---HHHHHHHHHHHHHHHHhcccCchHHHHH
Q psy7028          51 LDRFRRVAKLAVLNSTVIGKKNQMWERRLMKNFQ----LTPVVTAEDEV---ELELRKQCQQFAVDLLQQSRSTQELLTV  123 (707)
Q Consensus        51 ~~~~r~~~~~~~~~~~~~~~~~~~~~~p~~~a~~----L~~la~~E~E~---y~~L~~~~e~fA~~LLd~cr~s~E~~~i  123 (707)
                      .+|.|.+||||++||+||++++   +|||+|||+    |++||.+|+||   |++|+.|||+||||||||||+|+|++.|
T Consensus       180 hS~srin~yraLaSpa~i~LsS---~DPiltAf~LS~eL~~La~~E~Efk~dY~~Ls~qcq~F~v~LLdq~r~s~Ele~i  256 (822)
T KOG3609|consen  180 HSLSRVNIYRALASPALIWLSS---DDPILTAFALSWDLQQLASDELEFKEDYRDLSMQCQRFAVDLLDQARTSDELEMI  256 (822)
T ss_pred             chHHHHHHHHHhhcHHHHHccC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            5999999999999999999998   899999996    68999999999   9999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCchhhHHHHHhcccccc---chhHHHHHHHH-----------------------------------
Q psy7028         124 LNHDPETPYEEGEPMKLTRLELAIDYKQKRC---LDCEILLLLVS-----------------------------------  165 (707)
Q Consensus       124 L~~~~~~~~~~~~~~~l~~L~lAi~~~qKkF---p~~Q~ll~l~s-----------------------------------  165 (707)
                      ||++++. ++..++.+++|||+||+|+||+|   ||||-++.-+.                                   
T Consensus       257 Ln~~~~~-~~~~~~~sl~RLklAIkyeqK~FVahpNcQq~L~siWy~g~R~~~~~~K~~~~~~~~~~~P~~~l~yllap~  335 (822)
T KOG3609|consen  257 LNNRNNC-PERMTRISLPRLKLAIKYEQKEFVAHPNCQQLLKSVWYSGWRRKGIKPKFDAWRFLRLCFPMPSLVYLLAPM  335 (822)
T ss_pred             HcCCCCC-cccccccccHHHHHHHHHhhhheecCccHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHhHHHHHHHHhCCC
Confidence            9998873 33334789999999999999999   99993221100                                   


Q ss_pred             -h---hhhHHHHHhhccccc---------------c--cccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy7028         166 -Q---RADVILLEYLGVTDN---------------H--ITGQQRGLAPSYLEYLVLLYVAGYIWEETCEVWKDGLYRYLK  224 (707)
Q Consensus       166 -~---~~~~~~~~~~~~~~~---------------~--~~~~~~~~~~s~~E~ll~i~v~~~l~~Ei~ql~~~G~~~Yf~  224 (707)
                       +   ....||+.|+.+..+               .  ...+.+|++|+++||+++.||+|++|+|++++|..|++.|+.
T Consensus       336 S~~G~~~r~PfmKFi~H~~Sy~~FL~LL~l~s~~~~~~~~~~~~g~~p~~vE~li~~wV~G~iw~E~k~lw~~G~~~y~~  415 (822)
T KOG3609|consen  336 SRKGTTMRKPFMKFIAHITSYLVFLILLILASLIGFYFAWTDSRGVTPQALEILIYLWVMGLIWEEIKELWRVGRDGYLA  415 (822)
T ss_pred             CcccchhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence             0   001122222221111               1  125688999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCcCChHHHHHHHHHHHHHHHHHHHHhhhhccCcc
Q psy7028         225 DMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFDPQLIAEGLFAGANVFSALKLVHLFSINPHL  304 (707)
Q Consensus       225 d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~~~~~p~~~~~~r~~W~~~dp~lia~~l~ai~~vl~~lRll~ll~~~~~l  304 (707)
                      ++||++|++++++|++++++|.+++.+.....     ..+.+|.+|+++||++++|++||+++||+++|+++++++|+++
T Consensus       416 ~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~-----~~~~~R~~W~~~dp~ll~E~lfAiA~V~S~lrl~~i~t~n~~l  490 (822)
T KOG3609|consen  416 FWWNWLDFAMISIYLASFILRAVAWGKREAFD-----PSSVDRMHWPSFDPSLLAEGLFAIANVLSFLKLFYIFTMNPSL  490 (822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----ccccchhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            99999999999999999999999998654331     2567999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCcCCCCCCCCcccchhhhccccccch
Q psy7028         305 GPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNN  384 (707)
Q Consensus       305 Gpl~isl~rmi~Di~~Fl~i~~lvl~aFa~~l~~Ly~~y~~~~~~~c~~~~~~~g~l~p~~~~~~~~~~~~c~~~~~F~~  384 (707)
                      ||+||++|||++|+++|++||++|++||++|++||||||.+..+.+|..                    +.|.+...|++
T Consensus       491 GPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~--------------------~~~~~~~~fst  550 (822)
T KOG3609|consen  491 GPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQ--------------------DYTKTTDSFST  550 (822)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhccccc--------------------ccccccccccc
Confidence            9999999999999999999999999999999999999998877766532                    22334458999


Q ss_pred             hHHhHHHHHHHHcCCCCCCcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcccccC--------
Q psy7028         385 LFESSQSLFWASFGSTGTDKFELKGIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIEVGVEIEG--------  456 (707)
Q Consensus       385 ~~~S~~tLf~~lfG~~~~~~~~~~~~~~~~~~~g~ilf~~Y~li~~IVLLNLLIAmms~sy~~V~~~sd~eW--------  456 (707)
                      +++|+++|||++||.+......+++.|.+++++|.++|++|+++++||||||||||||++||+|+|++|+||        
T Consensus       551 i~eS~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~ADvEWKFARAKLw  630 (822)
T KOG3609|consen  551 IGESSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDADVEWKFARAKLW  630 (822)
T ss_pred             HHHHHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcchhHHHHHHHHHH
Confidence            999999999999999998888889999999999999999999999999999999999999999999999999        


Q ss_pred             -----CCCcCCCCCc-CCCChhHHHhhhh
Q psy7028         457 -----PGIVHTQPFD-MPNLPTPLTLEEK  479 (707)
Q Consensus       457 -----~~~~lPpPfn-ip~~~~~~~~~~~  479 (707)
                           ++.++||||| +|+||++++...+
T Consensus       631 ~syF~eg~tLPpPFNlipspks~~~~~~~  659 (822)
T KOG3609|consen  631 MSYFDEGMALPPPFNLIPSPKSFVYRNLR  659 (822)
T ss_pred             HHHhcCCCCCCCCcccccchHHHHHHHhh
Confidence                 8899999999 9999999987644

>TIGR00870 trp transient-receptor-potential calcium channel protein	Back alignment and domain information

>KOG3609\|consensus	Back alignment and domain information

>KOG3614\|consensus	Back alignment and domain information

>PLN03223 Polycystin cation channel protein; Provisional	Back alignment and domain information

>KOG3676\|consensus	Back alignment and domain information

>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys	Back alignment and domain information

>KOG3614\|consensus	Back alignment and domain information

>KOG3599\|consensus	Back alignment and domain information

>PF08344 TRP_2: Transient receptor ion channel II; InterPro: IPR013555 TRP (transient receptor potential) channels can be described as tetramers formed by subunits with six transmembrane domains and containing cation-selective pores, which in several cases show high calcium permeability	Back alignment and domain information

>TIGR00870 trp transient-receptor-potential calcium channel protein	Back alignment and domain information

>KOG0510\|consensus	Back alignment and domain information

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins	Back alignment and domain information

>KOG2301\|consensus	Back alignment and domain information

>KOG2302\|consensus	Back alignment and domain information

>KOG2302\|consensus	Back alignment and domain information

>KOG2301\|consensus	Back alignment and domain information

>PF08344 TRP_2: Transient receptor ion channel II; InterPro: IPR013555 TRP (transient receptor potential) channels can be described as tetramers formed by subunits with six transmembrane domains and containing cation-selective pores, which in several cases show high calcium permeability	Back alignment and domain information

>KOG3733\|consensus	Back alignment and domain information

>KOG3713\|consensus	Back alignment and domain information

>KOG1545\|consensus	Back alignment and domain information

>KOG0498\|consensus	Back alignment and domain information

>PF13606 Ank_3: Ankyrin repeat	Back alignment and domain information

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature	Back alignment and domain information

>PLN03192 Voltage-dependent potassium channel; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		707
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1s70_B		299	130 kDa myosin-binding subunit of smooth muscle my	2e-04
1s70_B		299	130 kDa myosin-binding subunit of smooth muscle my	4e-04
3aaa_C		123	Myotrophin, protein V-1; actin capping protein, ba	3e-04
3aaa_C		123	Myotrophin, protein V-1; actin capping protein, ba	3e-04
1n0q_A		93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-04
1n0q_A		93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-04
1n0q_A		93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-04
2pnn_A		273	Transient receptor potential cation channel subfa	4e-04
1n0r_A		126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-04
1n0r_A		126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-04
2zgd_A		110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-04
3b7b_A		237	Euchromatic histone-lysine N-methyltransferase 1;	7e-04
2l6b_A		115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-04
2l6b_A		115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-04
1n11_A		437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-04
3v30_A		172	DNA-binding protein rfxank; structural genomics co	8e-04
3v30_A		172	DNA-binding protein rfxank; structural genomics co	9e-04
2dzn_A		228	Probable 26S proteasome regulatory subunit P28; an	8e-04
3eu9_A		240	Huntingtin-interacting protein 14; epigenetics, an	8e-04
3v31_A		167	Ankyrin repeat family A protein 2; structural geno	9e-04
3c5r_A		137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-04
2fo1_E		373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 49.1 bits (116), Expect = 6e-06
 Identities = 95/652 (14%), Positives = 196/652 (30%), Gaps = 181/652 (27%)

Query: 125 NHDPETPYEEGEPMKLTRLELAIDYKQ--KRCLDC---EILLLLVSQRADVILLEYLGVT 179
           +H     +E GE  +    ++   ++       DC   + +   +  + ++         
Sbjct: 2   HHHHHMDFETGE-HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI--------- 51

Query: 180 DNHITGQQRGLAPSYLEYLVLLYVAGYIWEETCEVWKDGLYRYLKDMWNFIDFTRNLLYV 239
            +HI           +   + L      W       ++ + ++++++   I++       
Sbjct: 52  -DHIIMS-----KDAVSGTLRL-----FWT-LLSKQEEMVQKFVEEVLR-INYK------ 92

Query: 240 LVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFDPQLIAEGLFAGANV-----FSALKL 294
             F++  +   Q+Q  +      +   R  +N  D Q+     FA  NV     +  L+ 
Sbjct: 93  --FLMSPIKTEQRQPSMMTRMYIEQRDRL-YN--DNQV-----FAKYNVSRLQPYLKLRQ 142

Query: 295 VHLFSINPHLGPLQISL------GR--MIIDIVKFFFIYTLVLLSFACGLNQLLWY-FTE 345
             L  + P      + +      G+  + +D+   +     V         ++ W     
Sbjct: 143 -ALLELRPAKN---VLIDGVLGSGKTWVALDVCLSY----KVQCKMD---FKIFWLNLKN 191

Query: 346 LERKDCYSTMSSTGALNPSEDPNW-EEHDAACSKWRSFNNLFESSQSLF----------- 393
               +  + +     L    DPNW    D + +     +++    + L            
Sbjct: 192 CNSPE--TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 394 ----WASFGSTGTDKFELK-GIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMI 448
                 +      + F L   I   TRF  +  F S +    I L +  + +        
Sbjct: 250 LLNVQNA---KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-------- 298

Query: 449 EVGVEIEGPGI----VHTQPFDMPNLPT---PLTL----EEKKYLLSVERGDTATSWEKV 497
                 E   +    +  +P D+P       P  L    E  +     +   T  +W+ V
Sbjct: 299 ---TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-----DGLATWDNWKHV 350

Query: 498 --DKNTSMFTKDITPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLRESNEDSL 555
             DK T++    +  L  A ++  ++ L +          P               +   
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---------PPSAHIPTILLSLIWFDVIK 401

Query: 556 RHSMSRVNEYRALASPSLIALSSNDPILTAFQLSWELRNLAFTEPECRNEYMELRKQCQQ 615
              M  VN+   L   SL+     +  ++   +  EL+       +  NEY  L +    
Sbjct: 402 SDVMVVVNK---LHKYSLVEKQPKESTISIPSIYLELK------VKLENEY-ALHRSI-- 449

Query: 616 FAVDLLQQSRSTQELLTVLNHDPETPYEEG----------------EPMKLTRLELAIDY 659
             VD     ++        + D   PY +                 E M L R  + +D+
Sbjct: 450 --VDHYNIPKTFD------SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR-MVFLDF 500

Query: 660 KQKRFVAHSNIQQLLAAMWYDGLPGFRRKPLLEKLLDLSK----IILIFPYY 707
              RF     ++Q +    +D         +L  L  L      I    P Y
Sbjct: 501 ---RF-----LEQKIR---HDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299	Back alignment and structure

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299	Back alignment and structure

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123	Back alignment and structure

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123	Back alignment and structure

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93	Back alignment and structure

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93	Back alignment and structure

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93	Back alignment and structure

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273	Back alignment and structure

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126	Back alignment and structure

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126	Back alignment and structure

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110	Back alignment and structure

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237	Back alignment and structure

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115	Back alignment and structure

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115	Back alignment and structure

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437	Back alignment and structure

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172	Back alignment and structure

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172	Back alignment and structure

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228	Back alignment and structure

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240	Back alignment and structure

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167	Back alignment and structure

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137	Back alignment and structure

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		707
4dxw_A		229	Navrh, ION transport protein; tetrameric, voltage-	99.59
3rvy_A		285	ION transport protein; tetrameric ION channel, vol	99.52
2r9r_B		514	Paddle chimera voltage gated potassium channel KV;	98.89
4f4l_A		112	ION transport protein; alpha helical membrane prot	98.69
3beh_A		355	MLL3241 protein; transmembrane protein, membrane p	98.14
1orq_C		223	Potassium channel; voltage-dependent, KVAP, FAB co	97.67
1ors_C		132	Potassium channel; voltage-dependent, voltage sens	93.91
2ih3_C		122	Voltage-gated potassium channel; ION channel D-ami	85.01
2kav_A		129	Sodium channel protein type 2 subunit alpha; volta	84.77
2a9h_A		155	Voltage-gated potassium channel; potassium channel	84.13
2r9r_B		514	Paddle chimera voltage gated potassium channel KV;	81.64

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}	Back alignment and structure

Probab=99.59  E-value=6.3e-15  Score=149.67  Aligned_cols=186  Identities=16%  Similarity=0.189  Sum_probs=136.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccC
Q psy7028         193 SYLEYLVLLYVAGYIWEETCEVWKDG-LYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWN  271 (707)
Q Consensus       193 s~~E~ll~i~v~~~l~~Ei~ql~~~G-~~~Yf~d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~~~~~p~~~~~~r~~W~  271 (707)
                      .+++++-.+++..|..|-+.+++..| .++|+++.||++|++.+..+++.....                          
T Consensus        42 ~~l~~~e~~~~~iF~~E~~lri~~~~~~~~y~~~~wni~D~~~v~~~~i~~~~~--------------------------   95 (229)
T 4dxw_A           42 ETIHLLDYGITIFFVIEILIRFIGEKQKADFFKSGWNIFDTVIVAISLIPIPNN--------------------------   95 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHTTCC------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCchhHHhcCCcHHHHHHHHHHHHhhcCcc--------------------------
Confidence            46777778888899999999999875 579999999999998877655422100                          


Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q psy7028         272 AFDPQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDC  351 (707)
Q Consensus       272 ~~dp~lia~~l~ai~~vl~~lRll~ll~~~~~lGpl~isl~rmi~Di~~Fl~i~~lvl~aFa~~l~~Ly~~y~~~~~~~c  351 (707)
                               ....+..++..+|++++.+.++.+..+..++.+..+++..++++++++++.||+...+++.          
T Consensus        96 ---------~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~lf~----------  156 (229)
T 4dxw_A           96 ---------SSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAILFG----------  156 (229)
T ss_dssp             -------------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence                     0111223466788889999999999999999999999999999999999999976666541          


Q ss_pred             ccccccCCcCCCCCCCCcccchhhhccccccchhHHhHHHHHHHHcCCCCCCcccccCCccchhHHHHHHHHHHHHHHHH
Q psy7028         352 YSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWASFGSTGTDKFELKGIKSYTRFWGLLMFGSYSVINVI  431 (707)
Q Consensus       352 ~~~~~~~g~l~p~~~~~~~~~~~~c~~~~~F~~~~~S~~tLf~~lfG~~~~~~~~~~~~~~~~~~~g~ilf~~Y~li~~I  431 (707)
                              ..+|                .+|+|+++|+.++|..+.|+...+... +....  ..++.++|++|++++++
T Consensus       157 --------~~~~----------------~~F~~~~~a~~~lf~~~t~~~w~~i~~-~~~~~--~~~~~~~f~~~~~i~~~  209 (229)
T 4dxw_A          157 --------NDDP----------------SRWGDLGISLITLFQVLTLSSWETVML-PMQEI--YWWSWVYFFSFIIICSI  209 (229)
T ss_dssp             --------TTSC----------------TTTSSHHHHHHHHHHHHTTSSTHHHHH-HHHTT--CTTHHHHHHHHHHHHHH
T ss_pred             --------cCCc----------------ccccCHHHHHHHHHHHHccCCHHHHHH-HHHHh--CCcHHHHHHHHHHHHHH
Confidence                    1111                479999999999999999974422211 11111  12688999999999999


Q ss_pred             HHHHHHHHHHHhhHHhhhh
Q psy7028         432 VLLNLLIAMMSNSYAMIEV  450 (707)
Q Consensus       432 VLLNLLIAmms~sy~~V~~  450 (707)
                      +++||+||++.++|++.++
T Consensus       210 i~lNlfiavi~~~f~~~~~  228 (229)
T 4dxw_A          210 TILNLVIAILVDVVIQKKL  228 (229)
T ss_dssp             HHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            9999999999999998764

PyMOL of 4dxw

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*	Back alignment and structure

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*	Back alignment and structure

>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}	Back alignment and structure

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*	Back alignment and structure

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A	Back alignment and structure

>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1	Back alignment and structure

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...	Back alignment and structure

>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium channel, alternative splicing, disease epilepsy, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kbi_A	Back alignment and structure

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1	Back alignment and structure

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		707
d1awcb_		153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-04
d1oy3d_		255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.002
d1n11a_		408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.004
d1sw6a_		301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.004

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (88), Expect = 7e-04
 Identities = 14/133 (10%), Positives = 36/133 (27%)

Query: 509 TPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLRESNEDSLRHSMSRVNEYRAL 568
             L+ AA     + ++IL+  GA                +  +  +    +       A 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 569 ASPSLIALSSNDPILTAFQLSWELRNLAFTEPECRNEYMELRKQCQQFAVDLLQQSRSTQ 628
                  L        A  +   L++ A    +   +   L    +    ++++      
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 629 ELLTVLNHDPETP 641
             +   +   +T 
Sbjct: 124 ADVHTQSKFCKTA 136

PyMOL of d1awcb_

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255	Back information, alignment and structure

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408	Back information, alignment and structure

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		707
d1orsc_		132	Potassium channel KVAP {Archaeon Aeropyrum pernix	93.71

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.71  E-value=0.025  Score=49.49  Aligned_cols=93  Identities=9%  Similarity=-0.011  Sum_probs=58.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCc
Q psy7028         193 SYLEYLVLLYVAGYIWEETCEVWKDGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNA  272 (707)
Q Consensus       193 s~~E~ll~i~v~~~l~~Ei~ql~~~G~~~Yf~d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~~~~~p~~~~~~r~~W~~  272 (707)
                      ..++++-.+.+..|+.|-+.+++..|- .|....|||+|+++++.+......-  ..                       
T Consensus        37 ~~l~~~e~v~~~iF~~E~~lrl~~~~~-~~~~~~~~~iDl~ai~p~~~~~~~~--~~-----------------------   90 (132)
T d1orsc_          37 VRLYLVDLILVIILWADYAYRAYKSGD-PAGYVKKTLYEIPALVPAGLLALIE--GH-----------------------   90 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTS-TTTTTTTCGGGTGGGSCHHHHHHHH--HH-----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCc-cceeCCcchHHHHHHHHHHHHHhhh--hh-----------------------
Confidence            456777777888888888888988774 5656688999987766554432211  00                       


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHH
Q psy7028         273 FDPQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDI  318 (707)
Q Consensus       273 ~dp~lia~~l~ai~~vl~~lRll~ll~~~~~lGpl~isl~rmi~Di  318 (707)
                             -..+.+..++..+|++++++..+.++.+..++.....++
T Consensus        91 -------~~~lr~lR~~R~~R~lrl~~~~~~~~~ll~ai~~s~~~l  129 (132)
T d1orsc_          91 -------LAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL  129 (132)
T ss_dssp             -------HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                   012233344556666666666666777777776666554

PyMOL of d1orsc_