Psyllid ID: psy7060

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVR
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHcccccccccccccEEEccccccEEcccccccHHHHHHHHHHHHHcccccccccccccEEEEEccccccccHHHHHHHHHHHcccEEEEEEEccccHHHHHHHHHccccEEEEEEEEEccccccHHHHHHHHcccccEEcc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHcccEEccccccEEEEEcccccEEEEcccccccccHHHHHHHccccccEcccccccccEEEEcccccccccHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHcccEccEEEEEcccccccHHHHHHHHcccccEEcc
Coil and Loop (DISEMBL)
MLDATKQDVQRGLLEKELESVGIrlnkkkpniyfkqkkaggiafnstcpltqVNEKLVQLILHEYKIFNaeqkkaggiafnstcpltqVNEKLVQLILHEYKIFNaevlfredcnadELIDVINANRVYLPCIyaynkidqisIEEVDRiarqpnsvvvr
Flexible Loop (DISEMBL)
mldatkqdvqrgllekelesvgirlnkkkpniYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYAYNKidqisieevdriarqpnsvvvr
Low Complexity Region (SEG)
MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVR
Disordered region (IsUnstruct)
********************VGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRI**********
Disordered Region (DISOPRED)
MLDATK*DVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKI**AEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVR
Disordered Region (DISEMBL)
MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVR
Disordered Region (DISPRO)
*LDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	160	2.2.26 [Sep-21-2011]
Q9QXB9	364	Developmentally-regulated	yes	N/A	0.768	0.337	0.628	9e-50
P55039	364	Developmentally-regulated	yes	N/A	0.768	0.337	0.628	1e-49
Q58D56	364	Developmentally-regulated	yes	N/A	0.768	0.337	0.622	5e-49
P34280	366	Uncharacterized GTP-bindi	yes	N/A	0.768	0.336	0.528	5e-42
Q9CAI1	399	Developmentally regulated	yes	N/A	0.768	0.308	0.477	4e-37
Q9LQK0	399	Developmentally regulated	yes	N/A	0.768	0.308	0.471	6e-36
Q54WT4	364	Developmentally-regulated	yes	N/A	0.768	0.337	0.440	5e-32
P53295	368	Ribosome-interacting GTPa	yes	N/A	0.775	0.336	0.447	2e-31
P32235	364	GTP-binding protein 1 OS=	yes	N/A	0.768	0.337	0.421	2e-28
P32234	368	GTP-binding protein 128up	no	N/A	0.768	0.334	0.421	8e-27

>sp|Q9QXB9|DRG2_MOUSE Developmentally-regulated GTP-binding protein 2 OS=Mus musculus GN=Drg2 PE=1 SV=1

 Score =  195 bits (496), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 100/159 (62%), Positives = 110/159 (69%), Gaps = 36/159 (22%)

Query: 1   MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQL 60
           MLDATK DVQR LLEKELESVGIRLNK KPNIYFK KK G                    
Sbjct: 146 MLDATKGDVQRSLLEKELESVGIRLNKHKPNIYFKPKKGG-------------------- 185

Query: 61  ILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELI 120
                           GI+FNST  LTQ +EKLVQLILHEYKIFNAEVLFREDC+ D+ I
Sbjct: 186 ----------------GISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDDFI 229

Query: 121 DVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
           DVI  NRVY+PC+Y YNKIDQIS+EEVDR+AR+PNSVV+
Sbjct: 230 DVIVGNRVYMPCLYVYNKIDQISMEEVDRLARKPNSVVI 268

May play a role in cell proliferation, differentiation and death.
Mus musculus (taxid: 10090)

>sp|P55039|DRG2_HUMAN Developmentally-regulated GTP-binding protein 2 OS=Homo sapiens GN=DRG2 PE=1 SV=1

 Score =  195 bits (495), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 100/159 (62%), Positives = 110/159 (69%), Gaps = 36/159 (22%)

Query: 1   MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQL 60
           MLDATK +VQR LLEKELESVGIRLNK KPNIYFK KK G                    
Sbjct: 146 MLDATKGEVQRSLLEKELESVGIRLNKHKPNIYFKPKKGG-------------------- 185

Query: 61  ILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELI 120
                           GI+FNST  LTQ +EKLVQLILHEYKIFNAEVLFREDC+ DE I
Sbjct: 186 ----------------GISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDEFI 229

Query: 121 DVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
           DVI  NRVY+PC+Y YNKIDQIS+EEVDR+AR+PNSVV+
Sbjct: 230 DVIVGNRVYMPCLYVYNKIDQISMEEVDRLARKPNSVVI 268

May play a role in cell proliferation, differentiation and death.

Homo sapiens (taxid: 9606)

>sp|Q58D56|DRG2_BOVIN Developmentally-regulated GTP-binding protein 2 OS=Bos taurus GN=DRG2 PE=2 SV=1

 Score =  193 bits (490), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 99/159 (62%), Positives = 110/159 (69%), Gaps = 36/159 (22%)

Query: 1   MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQL 60
           MLDATK +VQR LLEKELESVGIRLNK KPNIYFK KK G                    
Sbjct: 146 MLDATKGEVQRSLLEKELESVGIRLNKHKPNIYFKPKKGG-------------------- 185

Query: 61  ILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELI 120
                           GI+FNST  LTQ +EKLVQLILHEYKIFNAEVLFREDC+ DE I
Sbjct: 186 ----------------GISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDEFI 229

Query: 121 DVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
           DVI  NRVY+PC+Y YNKIDQIS+EEVDR+AR+P+SVV+
Sbjct: 230 DVIVGNRVYMPCLYVYNKIDQISMEEVDRLARKPDSVVI 268

May play a role in cell proliferation, differentiation and death.

Bos taurus (taxid: 9913)

>sp|P34280|YKK3_CAEEL Uncharacterized GTP-binding protein C02F5.3 OS=Caenorhabditis elegans GN=C02F5.3 PE=3 SV=2

 Score =  169 bits (429), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 84/159 (52%), Positives = 100/159 (62%), Gaps = 36/159 (22%)

Query: 1   MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQL 60
           MLDA K D Q+ LLE+ELE+VGIRLNKK PNIY KQKK                      
Sbjct: 146 MLDAGKSDQQKMLLERELEAVGIRLNKKPPNIYVKQKKV--------------------- 184

Query: 61  ILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELI 120
                          GG+ F +T PLT  NEKL+  +LHEYKIFNA+V+FREDC  DE I
Sbjct: 185 ---------------GGVKFTNTVPLTHCNEKLIMTVLHEYKIFNADVIFREDCTVDEFI 229

Query: 121 DVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
           DVI  NRVY+ C+Y YNK+DQISIEE+DR+AR P+ VV+
Sbjct: 230 DVIQGNRVYMTCLYVYNKVDQISIEEIDRLARMPHHVVI 268

Caenorhabditis elegans (taxid: 6239)

>sp|Q9CAI1|DRG2_ARATH Developmentally regulated G-protein 2 OS=Arabidopsis thaliana GN=DRG2 PE=2 SV=1

 Score =  153 bits (386), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 76/159 (47%), Positives = 99/159 (62%), Gaps = 36/159 (22%)

Query: 1   MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQL 60
           +LDA+K +  R +L KELE+VG+RLNK+ P IYFK+KK G                    
Sbjct: 146 VLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTG-------------------- 185

Query: 61  ILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELI 120
                           GI+FN+T PLT+++EKL   ILHEYKI NAEVLFRED   D+ I
Sbjct: 186 ----------------GISFNTTTPLTRIDEKLCYQILHEYKIHNAEVLFREDATVDDFI 229

Query: 121 DVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
           DV+  NR Y+ C+Y YNKID + I++VDR+ARQPNS+V+
Sbjct: 230 DVVEGNRKYIKCVYVYNKIDVVGIDDVDRLARQPNSIVI 268

Binds GDP and GTP, and has low GTPase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQK0|DRG1_ARATH Developmentally regulated G-protein 1 OS=Arabidopsis thaliana GN=DRG1 PE=1 SV=1

 Score =  149 bits (377), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 75/159 (47%), Positives = 97/159 (61%), Gaps = 36/159 (22%)

Query: 1   MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQL 60
           +LDA+K +  R +L KELE+VG+RLNK  P IYFK+KK G                    
Sbjct: 146 VLDASKSEGHRQILTKELEAVGLRLNKTPPQIYFKKKKTG-------------------- 185

Query: 61  ILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELI 120
                           GI+FN+T PLT ++EKL   ILHEYKI NAEVLFRE+   D+ I
Sbjct: 186 ----------------GISFNTTAPLTHIDEKLCYQILHEYKIHNAEVLFRENATVDDFI 229

Query: 121 DVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
           DVI  NR Y+ C+Y YNKID + I++VDR++RQPNS+V+
Sbjct: 230 DVIEGNRKYIKCVYVYNKIDVVGIDDVDRLSRQPNSIVI 268

Binds GDP and GTP, and has low GTPase activity. May interact with phosphatidic acid (PA).

Arabidopsis thaliana (taxid: 3702)

>sp|Q54WT4|DRG2_DICDI Developmentally-regulated GTP-binding protein 2 homolog OS=Dictyostelium discoideum GN=drg2 PE=3 SV=1

 Score =  136 bits (343), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 70/159 (44%), Positives = 94/159 (59%), Gaps = 36/159 (22%)

Query: 1   MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQL 60
           MLDA K ++Q+ LL++ELES+GIRLN + PNIYFK K AG                    
Sbjct: 146 MLDANKGEIQKRLLQEELESIGIRLNSQPPNIYFKLKSAG-------------------- 185

Query: 61  ILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELI 120
                           G+   +T  LT++ EKL + ILHEYKIFN +++ R D   DELI
Sbjct: 186 ----------------GVNLTATQTLTKITEKLAKSILHEYKIFNCDLVIRCDPTVDELI 229

Query: 121 DVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
           D I   R Y+ C+Y YNK+D +S+E+VDR++RQPNSVV+
Sbjct: 230 DAIEGRRSYIRCLYVYNKMDHMSMEDVDRLSRQPNSVVI 268

Dictyostelium discoideum (taxid: 44689)

>sp|P53295|RBG2_YEAST Ribosome-interacting GTPase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RBG2 PE=1 SV=1

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/161 (44%), Positives = 99/161 (61%), Gaps = 37/161 (22%)

Query: 1   MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQL 60
           +LDATK + QR  LEKELE+VGIRLNK+KPNIY+K+K+ GG+    T P           
Sbjct: 147 VLDATKSEHQRASLEKELENVGIRLNKEKPNIYYKKKETGGVKVTFTSP----------- 195

Query: 61  ILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFRED-CNADEL 119
                                   P T + E+ +++IL +Y+I NAEVL R+D C  D+ 
Sbjct: 196 ------------------------PKTNLTEQAIKMILRDYRIHNAEVLVRDDQCTIDDF 231

Query: 120 IDVINA-NRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
           IDVIN  +R Y+ C+Y YNKID +S+EEVD++AR+PN+VV+
Sbjct: 232 IDVINEQHRNYVKCLYVYNKIDAVSLEEVDKLAREPNTVVM 272

Involved in ribosomal function.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P32235|GTP1_SCHPO GTP-binding protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gtp1 PE=3 SV=2

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 88/159 (55%), Gaps = 36/159 (22%)

Query: 1   MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQL 60
           +LDATK   QR  +E ELE VGIRLN++ PN+    KK G                    
Sbjct: 145 VLDATKAADQREKIEYELEQVGIRLNRQPPNVTLTIKKNG-------------------- 184

Query: 61  ILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELI 120
                           GI FN T PLT ++ K+   ILHEY+I NA++L RED   D+ I
Sbjct: 185 ----------------GIKFNHTVPLTHMDYKMAYNILHEYRIHNADILIREDITVDDFI 228

Query: 121 DVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
           D++  NR Y+ C+Y Y+KID +S+EEVDR+AR P SVV+
Sbjct: 229 DLVMGNRRYINCLYCYSKIDAVSLEEVDRLARLPKSVVI 267

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P32234|128UP_DROME GTP-binding protein 128up OS=Drosophila melanogaster GN=128up PE=2 SV=2

 Score =  119 bits (298), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 86/159 (54%), Gaps = 36/159 (22%)

Query: 1   MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQL 60
           +LD  K    + LLE ELE  GIRLNKK PNIY+K+K  GG                   
Sbjct: 148 VLDCLKPLGHKKLLEHELEGFGIRLNKKPPNIYYKRKDKGG------------------- 188

Query: 61  ILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELI 120
                            I  NS  P ++++  LV+ IL EYKI NA++  R D  +D+LI
Sbjct: 189 -----------------INLNSMVPQSELDTDLVKTILSEYKIHNADITLRYDATSDDLI 231

Query: 121 DVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
           DVI  NR+Y+PCIY  NKIDQISIEE+D I + P+ V +
Sbjct: 232 DVIEGNRIYIPCIYLLNKIDQISIEELDVIYKIPHCVPI 270

Deformed (Dfd) is required to activate 1.28up in maxillary segment cells.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
307184431	363	Developmentally-regulated GTP-binding pr	0.768	0.338	0.710	3e-55
307197879	363	Developmentally-regulated GTP-binding pr	0.768	0.338	0.710	4e-55
383864483	363	PREDICTED: developmentally-regulated GTP	0.768	0.338	0.704	1e-54
340720787	363	PREDICTED: LOW QUALITY PROTEIN: developm	0.768	0.338	0.704	1e-54
66540013	363	PREDICTED: developmentally-regulated GTP	0.768	0.338	0.704	1e-54
332030224	363	Developmentally-regulated GTP-binding pr	0.768	0.338	0.704	5e-54
91089351	363	PREDICTED: similar to GA19430-PA [Tribol	0.768	0.338	0.679	3e-52
156549535	363	PREDICTED: developmentally-regulated GTP	0.768	0.338	0.679	5e-52
193657389	363	PREDICTED: developmentally-regulated GTP	0.768	0.338	0.666	1e-51
242017408	375	Developmentally-regulated GTP-binding pr	0.768	0.328	0.666	1e-51

>gi|307184431|gb|EFN70840.1| Developmentally-regulated GTP-binding protein 2 [Camponotus floridanus]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 113/159 (71%), Positives = 119/159 (74%), Gaps = 36/159 (22%)

Query: 1   MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQL 60
           MLDATKQDVQR LLEKELESVGIRLNKKKPNIYFK KK G                    
Sbjct: 145 MLDATKQDVQRQLLEKELESVGIRLNKKKPNIYFKVKKGG-------------------- 184

Query: 61  ILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELI 120
                           G+AFNSTCPLT+V+EKLVQ+ILHEYKIFNAEVLFREDC+ADELI
Sbjct: 185 ----------------GLAFNSTCPLTKVDEKLVQMILHEYKIFNAEVLFREDCSADELI 228

Query: 121 DVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
           DVINANRVYLPC+Y YNKIDQISIEEVDRIARQPNSVVV
Sbjct: 229 DVINANRVYLPCLYVYNKIDQISIEEVDRIARQPNSVVV 267

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197879|gb|EFN78978.1| Developmentally-regulated GTP-binding protein 2 [Harpegnathos saltator]

 Score =  219 bits (557), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 113/159 (71%), Positives = 119/159 (74%), Gaps = 36/159 (22%)

Query: 1   MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQL 60
           MLDATKQDVQR LLEKELESVGIRLNKKKPNIYFK KK G                    
Sbjct: 145 MLDATKQDVQRQLLEKELESVGIRLNKKKPNIYFKVKKGG-------------------- 184

Query: 61  ILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELI 120
                           G+AFNSTCPLT+V+EKLVQ+ILHEYKIFNAEVLFREDC+ADELI
Sbjct: 185 ----------------GLAFNSTCPLTKVDEKLVQMILHEYKIFNAEVLFREDCSADELI 228

Query: 121 DVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
           DVINANRVYLPC+Y YNKIDQISIEEVDRIARQPNSVVV
Sbjct: 229 DVINANRVYLPCLYVYNKIDQISIEEVDRIARQPNSVVV 267

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864483|ref|XP_003707708.1| PREDICTED: developmentally-regulated GTP-binding protein 2-like [Megachile rotundata]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 112/159 (70%), Positives = 119/159 (74%), Gaps = 36/159 (22%)

Query: 1   MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQL 60
           MLDATKQDVQR LLEKELESVGIRLNKKKPNIYFK KK G                    
Sbjct: 145 MLDATKQDVQRQLLEKELESVGIRLNKKKPNIYFKVKKGG-------------------- 184

Query: 61  ILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELI 120
                           G+AFNSTCPLT+V+EKLVQ+ILHEYKIFNAEVLFREDC+ADELI
Sbjct: 185 ----------------GLAFNSTCPLTKVDEKLVQMILHEYKIFNAEVLFREDCSADELI 228

Query: 121 DVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
           DVINANRVYLPC+Y +NKIDQISIEEVDRIARQPNSVVV
Sbjct: 229 DVINANRVYLPCLYVHNKIDQISIEEVDRIARQPNSVVV 267

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720787|ref|XP_003398811.1| PREDICTED: LOW QUALITY PROTEIN: developmentally-regulated GTP-binding protein 2-like [Bombus terrestris] gi|350398067|ref|XP_003485077.1| PREDICTED: developmentally-regulated GTP-binding protein 2-like [Bombus impatiens]

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 112/159 (70%), Positives = 119/159 (74%), Gaps = 36/159 (22%)

Query: 1   MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQL 60
           MLDATKQDVQR LLEKELESVGIRLNKKKPNIYFK KK G                    
Sbjct: 145 MLDATKQDVQRQLLEKELESVGIRLNKKKPNIYFKIKKGG-------------------- 184

Query: 61  ILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELI 120
                           G+AFNSTCPLT+V+EKLVQ+ILHEYKIFNAEVLFREDC+ADELI
Sbjct: 185 ----------------GLAFNSTCPLTKVDEKLVQMILHEYKIFNAEVLFREDCSADELI 228

Query: 121 DVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
           DVINANRVYLPC+Y +NKIDQISIEEVDRIARQPNSVVV
Sbjct: 229 DVINANRVYLPCLYVHNKIDQISIEEVDRIARQPNSVVV 267

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66540013|ref|XP_624466.1| PREDICTED: developmentally-regulated GTP-binding protein 2-like [Apis mellifera] gi|380028994|ref|XP_003698168.1| PREDICTED: developmentally-regulated GTP-binding protein 2-like [Apis florea]

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 112/159 (70%), Positives = 119/159 (74%), Gaps = 36/159 (22%)

Query: 1   MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQL 60
           MLDATKQDVQR LLEKELESVGIRLNKKKPNIYFK KK G                    
Sbjct: 145 MLDATKQDVQRQLLEKELESVGIRLNKKKPNIYFKIKKGG-------------------- 184

Query: 61  ILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELI 120
                           G+AFNSTCPLT+V+EKLVQ+ILHEYKIFNAEVLFREDC+ADELI
Sbjct: 185 ----------------GLAFNSTCPLTKVDEKLVQMILHEYKIFNAEVLFREDCSADELI 228

Query: 121 DVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
           DVINANRVYLPC+Y +NKIDQISIEEVDRIARQPNSVVV
Sbjct: 229 DVINANRVYLPCLYVHNKIDQISIEEVDRIARQPNSVVV 267

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030224|gb|EGI70007.1| Developmentally-regulated GTP-binding protein 2 [Acromyrmex echinatior]

 Score =  215 bits (547), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 112/159 (70%), Positives = 118/159 (74%), Gaps = 36/159 (22%)

Query: 1   MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQL 60
           MLDATKQDVQR LLEKELESVGIRLNKKKPNIYFK KK G                    
Sbjct: 145 MLDATKQDVQRQLLEKELESVGIRLNKKKPNIYFKVKKGG-------------------- 184

Query: 61  ILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELI 120
                           G+AFNSTCPLT+V+EKLVQ+ILHEYKIFNAEVLFRED +ADELI
Sbjct: 185 ----------------GLAFNSTCPLTKVDEKLVQMILHEYKIFNAEVLFREDYSADELI 228

Query: 121 DVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
           DVINANRVYLPC+Y YNKIDQISIEEVDRIARQPNSVVV
Sbjct: 229 DVINANRVYLPCLYVYNKIDQISIEEVDRIARQPNSVVV 267

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089351|ref|XP_972899.1| PREDICTED: similar to GA19430-PA [Tribolium castaneum]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 108/159 (67%), Positives = 115/159 (72%), Gaps = 36/159 (22%)

Query: 1   MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQL 60
           MLDATK+DV R LLEKELESVGIRLNK KPNIYFK KK G                    
Sbjct: 145 MLDATKKDVHRHLLEKELESVGIRLNKMKPNIYFKVKKGG-------------------- 184

Query: 61  ILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELI 120
                           GI+FNSTCPLT+++EKLVQ+ILHEYKIFNAEVLFREDC ADELI
Sbjct: 185 ----------------GISFNSTCPLTKIDEKLVQMILHEYKIFNAEVLFREDCTADELI 228

Query: 121 DVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
           DVI ANRVYLPC+Y YNKIDQISIEEVDRIARQPNSVVV
Sbjct: 229 DVICANRVYLPCLYVYNKIDQISIEEVDRIARQPNSVVV 267

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156549535|ref|XP_001602657.1| PREDICTED: developmentally-regulated GTP-binding protein 2-like [Nasonia vitripennis]

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 108/159 (67%), Positives = 116/159 (72%), Gaps = 36/159 (22%)

Query: 1   MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQL 60
           MLDATKQDVQR LLEKELESVGIRLNK+KPNIYFK KK G                    
Sbjct: 145 MLDATKQDVQRQLLEKELESVGIRLNKRKPNIYFKIKKGG-------------------- 184

Query: 61  ILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELI 120
                           G++FNSTC LT+V+EKLVQ+ILHEYKIFNAEVLFREDC ADELI
Sbjct: 185 ----------------GLSFNSTCILTKVDEKLVQMILHEYKIFNAEVLFREDCTADELI 228

Query: 121 DVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
           DVINANRVYLPC+Y YNKIDQISIEEVDRIARQ NS+VV
Sbjct: 229 DVINANRVYLPCLYVYNKIDQISIEEVDRIARQANSIVV 267

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193657389|ref|XP_001950750.1| PREDICTED: developmentally-regulated GTP-binding protein 2-like [Acyrthosiphon pisum]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 106/159 (66%), Positives = 116/159 (72%), Gaps = 36/159 (22%)

Query: 1   MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQL 60
           MLDATKQD+QR LLEKELESVGIRLNK+KPNIYFK KK G                    
Sbjct: 145 MLDATKQDIQRQLLEKELESVGIRLNKRKPNIYFKVKKGG-------------------- 184

Query: 61  ILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELI 120
                           G+AFN+TCPL++V+EKLVQ+ILHEYKIFNAEVLFREDC  DELI
Sbjct: 185 ----------------GLAFNATCPLSRVDEKLVQVILHEYKIFNAEVLFREDCTPDELI 228

Query: 121 DVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
           DVI+ NRVYLPC+Y YNKIDQISIEEVDRIARQPNSVVV
Sbjct: 229 DVISDNRVYLPCMYVYNKIDQISIEEVDRIARQPNSVVV 267

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017408|ref|XP_002429181.1| Developmentally-regulated GTP-binding protein, putative [Pediculus humanus corporis] gi|212514059|gb|EEB16443.1| Developmentally-regulated GTP-binding protein, putative [Pediculus humanus corporis]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 106/159 (66%), Positives = 118/159 (74%), Gaps = 36/159 (22%)

Query: 1   MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQL 60
           MLDATKQDVQR LLEKELESVGIRLNKKKPNIYFK KK+G                    
Sbjct: 145 MLDATKQDVQRVLLEKELESVGIRLNKKKPNIYFKIKKSG-------------------- 184

Query: 61  ILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELI 120
                           G++FN+TCPLT+V+EKLVQ+ILHEYKIFNAEVLFREDC ADELI
Sbjct: 185 ----------------GLSFNATCPLTKVDEKLVQMILHEYKIFNAEVLFREDCTADELI 228

Query: 121 DVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
           DVI +NRVY+PC+Y YNKIDQ+SIEEVDRIARQP+SVVV
Sbjct: 229 DVICSNRVYIPCLYCYNKIDQVSIEEVDRIARQPHSVVV 267

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
FB|FBgn0038723	363	CG6195 [Drosophila melanogaste	0.556	0.245	0.764	1.1e-34
RGD|1562380	363	Drg2 "developmentally regulate	0.637	0.280	0.699	2.2e-34
UNIPROTKB|E2RJ29	364	DRG2 "Uncharacterized protein"	0.631	0.277	0.705	3.6e-34
UNIPROTKB|A8MZF9	343	DRG2 "Developmentally-regulate	0.631	0.294	0.705	3.6e-34
UNIPROTKB|P55039	364	DRG2 "Developmentally-regulate	0.631	0.277	0.705	3.6e-34
MGI|MGI:1342307	364	Drg2 "developmentally regulate	0.631	0.277	0.696	7.4e-34
UNIPROTKB|Q58D56	364	DRG2 "Developmentally-regulate	0.631	0.277	0.696	1.2e-33
ZFIN|ZDB-GENE-040808-29	364	drg2 "developmentally regulate	0.543	0.239	0.758	2.5e-33
UNIPROTKB|F1NIK3	364	DRG2 "Uncharacterized protein"	0.543	0.239	0.781	4.1e-33
WB|WBGene00015346	366	C02F5.3 [Caenorhabditis elegan	0.556	0.243	0.651	1.8e-30

FB|FBgn0038723 CG6195 [Drosophila melanogaster (taxid:7227)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 68/89 (76%), Positives = 79/89 (88%)

Query:    71 EQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYL 130
             +QKK GG++FN+TC LT+ NEK+VQ ILH +KIFNAEVLFREDC  DE IDV+ ANRVYL
Sbjct:   179 KQKKGGGLSFNATCSLTRCNEKMVQTILHSFKIFNAEVLFREDCTEDEFIDVVTANRVYL 238

Query:   131 PCIYAYNKIDQISIEEVDRIARQPNSVVV 159
             PC+Y YNKIDQISIEEVDR+ARQPNS+VV
Sbjct:   239 PCLYVYNKIDQISIEEVDRLARQPNSIVV 267

GO:0005525 "GTP binding" evidence=ISS

RGD|1562380 Drg2 "developmentally regulated GTP binding protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 72/103 (69%), Positives = 87/103 (84%)

Query:    58 VQLILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNAD 117
             ++L  H+  I+  + KK GGI+FNST  LTQ +EKLVQLILHEYKIFNAEVLFREDC+ D
Sbjct:   168 IRLNKHKPNIY-FKPKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPD 226

Query:   118 ELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVR 160
             + IDVI  NRVY+PC+Y YNKIDQIS+EEVDR+AR+PNSVV+R
Sbjct:   227 DFIDVIVGNRVYMPCLYVYNKIDQISMEEVDRLARKPNSVVIR 269

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

UNIPROTKB|E2RJ29 DRG2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 72/102 (70%), Positives = 86/102 (84%)

Query:    58 VQLILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNAD 117
             ++L  H+  I+  + KK GGI+FNST  LTQ +EKLVQLILHEYKIFNAEVLFREDC+ D
Sbjct:   168 IRLNKHKPNIY-FKPKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPD 226

Query:   118 ELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
             E IDVI  NRVY+PC+Y YNKIDQIS+EEVDR+AR+PNSVV+
Sbjct:   227 EFIDVIVGNRVYMPCLYVYNKIDQISMEEVDRLARKPNSVVI 268

GO:0005739 "mitochondrion" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|A8MZF9 DRG2 "Developmentally-regulated GTP-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 72/102 (70%), Positives = 86/102 (84%)

Query:    58 VQLILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNAD 117
             ++L  H+  I+  + KK GGI+FNST  LTQ +EKLVQLILHEYKIFNAEVLFREDC+ D
Sbjct:   168 IRLNKHKPNIY-FKPKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPD 226

Query:   118 ELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
             E IDVI  NRVY+PC+Y YNKIDQIS+EEVDR+AR+PNSVV+
Sbjct:   227 EFIDVIVGNRVYMPCLYVYNKIDQISMEEVDRLARKPNSVVI 268

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|P55039 DRG2 "Developmentally-regulated GTP-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 72/102 (70%), Positives = 86/102 (84%)

Query:    58 VQLILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNAD 117
             ++L  H+  I+  + KK GGI+FNST  LTQ +EKLVQLILHEYKIFNAEVLFREDC+ D
Sbjct:   168 IRLNKHKPNIY-FKPKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPD 226

Query:   118 ELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
             E IDVI  NRVY+PC+Y YNKIDQIS+EEVDR+AR+PNSVV+
Sbjct:   227 EFIDVIVGNRVYMPCLYVYNKIDQISMEEVDRLARKPNSVVI 268

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0007165 "signal transduction" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:1342307 Drg2 "developmentally regulated GTP binding protein 2" [Mus musculus (taxid:10090)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 71/102 (69%), Positives = 86/102 (84%)

Query:    58 VQLILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNAD 117
             ++L  H+  I+  + KK GGI+FNST  LTQ +EKLVQLILHEYKIFNAEVLFREDC+ D
Sbjct:   168 IRLNKHKPNIY-FKPKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPD 226

Query:   118 ELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
             + IDVI  NRVY+PC+Y YNKIDQIS+EEVDR+AR+PNSVV+
Sbjct:   227 DFIDVIVGNRVYMPCLYVYNKIDQISMEEVDRLARKPNSVVI 268

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q58D56 DRG2 "Developmentally-regulated GTP-binding protein 2" [Bos taurus (taxid:9913)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 71/102 (69%), Positives = 86/102 (84%)

Query:    58 VQLILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNAD 117
             ++L  H+  I+  + KK GGI+FNST  LTQ +EKLVQLILHEYKIFNAEVLFREDC+ D
Sbjct:   168 IRLNKHKPNIY-FKPKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPD 226

Query:   118 ELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
             E IDVI  NRVY+PC+Y YNKIDQIS+EEVDR+AR+P+SVV+
Sbjct:   227 EFIDVIVGNRVYMPCLYVYNKIDQISMEEVDRLARKPDSVVI 268

GO:0005739 "mitochondrion" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

ZFIN|ZDB-GENE-040808-29 drg2 "developmentally regulated GTP binding protein 2" [Danio rerio (taxid:7955)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 66/87 (75%), Positives = 78/87 (89%)

Query:    73 KKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPC 132
             KK GG+++NST PLTQ +EKLVQLILHEYKIFNAEVLFREDC+ D+ IDVI  NRVY+PC
Sbjct:   182 KKGGGLSYNSTVPLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDDFIDVIVGNRVYMPC 241

Query:   133 IYAYNKIDQISIEEVDRIARQPNSVVV 159
             +Y YNK+DQISIEEVDR+A +PNSVV+
Sbjct:   242 LYVYNKVDQISIEEVDRLAHRPNSVVI 268

GO:0005525 "GTP binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1NIK3 DRG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 68/87 (78%), Positives = 78/87 (89%)

Query:    73 KKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPC 132
             KK GGI+FNST  LTQ +EKLVQLILHEYKIFNAEVLFREDC+ DE IDVI  NRVY+PC
Sbjct:   182 KKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDEFIDVIVGNRVYMPC 241

Query:   133 IYAYNKIDQISIEEVDRIARQPNSVVV 159
             +Y YNKIDQIS+EEVDR+AR+P+SVV+
Sbjct:   242 LYVYNKIDQISMEEVDRLARRPHSVVI 268

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

WB|WBGene00015346 C02F5.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 58/89 (65%), Positives = 72/89 (80%)

Query:    71 EQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYL 130
             +QKK GG+ F +T PLT  NEKL+  +LHEYKIFNA+V+FREDC  DE IDVI  NRVY+
Sbjct:   180 KQKKVGGVKFTNTVPLTHCNEKLIMTVLHEYKIFNADVIFREDCTVDEFIDVIQGNRVYM 239

Query:   131 PCIYAYNKIDQISIEEVDRIARQPNSVVV 159
              C+Y YNK+DQISIEE+DR+AR P+ VV+
Sbjct:   240 TCLYVYNKVDQISIEEIDRLARMPHHVVI 268

GO:0005525 "GTP binding" evidence=IEA

GO:0015093 "ferrous iron transmembrane transporter activity" evidence=IEA

GO:0015684 "ferrous iron transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q58D56	DRG2_BOVIN	No assigned EC number	0.6226	0.7687	0.3379	yes	N/A
P55039	DRG2_HUMAN	No assigned EC number	0.6289	0.7687	0.3379	yes	N/A
Q9QXB9	DRG2_MOUSE	No assigned EC number	0.6289	0.7687	0.3379	yes	N/A
P34280	YKK3_CAEEL	No assigned EC number	0.5283	0.7687	0.3360	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	160
cd01896	233	cd01896, DRG, Developmentally Regulated GTP-bindin	1e-60
COG1163	365	COG1163, DRG, Predicted GTPase [General function p	6e-39
TIGR03156	351	TIGR03156, GTP_HflX, GTP-binding protein HflX	5e-04

>gnl|CDD|206683 cd01896, DRG, Developmentally Regulated GTP-binding protein (DRG)

 Score =  186 bits (476), Expect = 1e-60
 Identities = 81/159 (50%), Positives = 98/159 (61%), Gaps = 36/159 (22%)

Query: 1   MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQL 60
           +LDATK + QR +LE+ELE VGIRLNKK PN+  K+KK GGI   ST PLT+++EK V+ 
Sbjct: 84  VLDATKPEGQREILERELEGVGIRLNKKPPNVTIKKKKKGGINITSTVPLTKLDEKTVKA 143

Query: 61  ILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELI 120
           IL EYKI NA+                                    VL RED   D+LI
Sbjct: 144 ILREYKIHNAD------------------------------------VLIREDITVDDLI 167

Query: 121 DVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
           DVI  NRVY+PC+Y YNKID ISIEE+DR+AR PNSVV+
Sbjct: 168 DVIEGNRVYIPCLYVYNKIDLISIEELDRLARIPNSVVI 206

The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. Length = 233

>gnl|CDD|224085 COG1163, DRG, Predicted GTPase [General function prediction only]

 Score =  135 bits (341), Expect = 6e-39
 Identities = 63/158 (39%), Positives = 87/158 (55%), Gaps = 36/158 (22%)

Query: 2   LDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQLI 61
           LD  +    R ++E+ELE VGIRLNK+ P++  K+K++GGI  N T PLT ++E  V   
Sbjct: 148 LDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTV--- 204

Query: 62  LHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELID 121
                       +A                     IL EY+I NA+VL RED   D+LID
Sbjct: 205 ------------RA---------------------ILREYRIHNADVLIREDVTLDDLID 231

Query: 122 VINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
            +  NRVY P +Y  NKID   +EE++R+AR+PNSV +
Sbjct: 232 ALEGNRVYKPALYVVNKIDLPGLEELERLARKPNSVPI 269

Length = 365

>gnl|CDD|234125 TIGR03156, GTP_HflX, GTP-binding protein HflX

 Score = 38.6 bits (91), Expect = 5e-04
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 21/87 (24%)

Query: 79  AFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDV-------INANRVYLP 131
           AF +T  L +V E    L+LH        V+   D + +E I+        + A  +  P
Sbjct: 258 AFRAT--LEEVRE--ADLLLH--------VVDASDPDREEQIEAVEKVLEELGAEDI--P 303

Query: 132 CIYAYNKIDQISIEEVDRIARQPNSVV 158
            +  YNKID +    ++R+       V
Sbjct: 304 QLLVYNKIDLLDEPRIERLEEGYPEAV 330

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like) [Unknown function, General]. Length = 351

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
KOG1486|consensus	364		100.0
COG1163	365	DRG Predicted GTPase [General function prediction	100.0
KOG1487|consensus	358		100.0
cd01896	233	DRG The developmentally regulated GTP-binding prot	100.0
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.92
PRK09602	396	translation-associated GTPase; Reviewed	98.7
KOG1486|consensus	364		94.92
COG2262	411	HflX GTPases [General function prediction only]	94.55
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	90.88
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	90.23
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	90.15
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	89.46
COG1160	444	Predicted GTPases [General function prediction onl	88.68
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	88.29
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	86.98
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	86.62
cd01881	176	Obg_like The Obg-like subfamily consists of five w	86.17
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	86.05
PTZ00258	390	GTP-binding protein; Provisional	85.41
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	83.15
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	83.04
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	83.02
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	82.98
cd01896	233	DRG The developmentally regulated GTP-binding prot	82.63
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	82.01
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	81.98
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	81.8
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	81.19
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	80.76
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	80.69
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	80.67
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	80.26

>KOG1486|consensus

Probab=100.00  E-value=5.7e-52  Score=360.49  Aligned_cols=124  Identities=73%  Similarity=1.165  Sum_probs=118.0

Q ss_pred             CCCCCCchHHHHHHHHHHHhcCceeccCCCCeEEEEecCcceEEecccCCchhhHHHHHHHHHHhhhhhhHHhhhcCccc
Q psy7060           1 MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAF   80 (160)
Q Consensus         1 vLDa~k~~~q~~~le~ELe~~GIrLnkk~p~I~ikkk~~GGI~i~~t~~lt~~~~~~v~~~l~~yki~n~~~~~~~~~~~   80 (160)
                      ||||+|.+.||.+||+|||++||||||+||||+|++|+.|||.|+.|||+                              
T Consensus       146 vLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~l------------------------------  195 (364)
T KOG1486|consen  146 VLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPL------------------------------  195 (364)
T ss_pred             EecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeecc------------------------------
Confidence            79999999999999999999999999999999999998888877665555                              


Q ss_pred             cccCCCcccCHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhcCcceeceEEEEecCCCCCHHHHHHHhcCCCceeeC
Q psy7060          81 NSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVR  160 (160)
Q Consensus        81 ~~~~~~~~~~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~nrvY~P~iyv~NKiD~is~eevd~i~~~p~~v~is  160 (160)
                            |++||++++.||||||||||+|+||||||.|||||+|.|||+|+||+|||||||++|+||+||+||+||||+||
T Consensus       196 ------T~~~ek~i~~ILheykI~Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eevdrlAr~PnsvViS  269 (364)
T KOG1486|consen  196 ------THCDEKLIYTILHEYKIHNAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEVDRLARQPNSVVIS  269 (364)
T ss_pred             ------ccccHHHHHHHHHHHeeccceEEEecCCChHHHHHHHhccceEEEEEEEeeccceecHHHHHHHhcCCCcEEEE
Confidence                  55999999999999999999999999999999999999999999999999999999999999999999999997

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=100.00  E-value=4.9e-41  Score=295.45  Aligned_cols=124  Identities=50%  Similarity=0.849  Sum_probs=120.2

Q ss_pred             CCCCCCchHHHHHHHHHHHhcCceeccCCCCeEEEEecCcceEEecccCCchhhHHHHHHHHHHhhhhhhHHhhhcCccc
Q psy7060           1 MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAF   80 (160)
Q Consensus         1 vLDa~k~~~q~~~le~ELe~~GIrLnkk~p~I~ikkk~~GGI~i~~t~~lt~~~~~~v~~~l~~yki~n~~~~~~~~~~~   80 (160)
                      |||++++..|++.|++|||++|||||+.||+|+|++++.|||++++++++++                            
T Consensus       147 Vld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~----------------------------  198 (365)
T COG1163         147 VLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTH----------------------------  198 (365)
T ss_pred             EEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEeccccccc----------------------------
Confidence            5899999878999999999999999999999999999999999998888776                            


Q ss_pred             cccCCCcccCHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhcCcceeceEEEEecCCCCCHHHHHHHhcCCCceeeC
Q psy7060          81 NSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVR  160 (160)
Q Consensus        81 ~~~~~~~~~~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~nrvY~P~iyv~NKiD~is~eevd~i~~~p~~v~is  160 (160)
                              +|+++|++||+|||||||+|+||||||+|||||++++||+|+|||||+||+|+++.|+++.+++.|++++||
T Consensus       199 --------~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~~~v~is  270 (365)
T COG1163         199 --------LDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKPNSVPIS  270 (365)
T ss_pred             --------CCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhccceEEEe
Confidence                    999999999999999999999999999999999999999999999999999999999999999999999997

>KOG1487|consensus

Probab=100.00  E-value=2.1e-37  Score=269.79  Aligned_cols=120  Identities=48%  Similarity=0.783  Sum_probs=117.1

Q ss_pred             CCCCCCchHHHHHHHHHHHhcCceeccCCCCeEEEEecCcceEEecccCCchhhHHHHHHHHHHhhhhhhHHhhhcCccc
Q psy7060           1 MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAF   80 (160)
Q Consensus         1 vLDa~k~~~q~~~le~ELe~~GIrLnkk~p~I~ikkk~~GGI~i~~t~~lt~~~~~~v~~~l~~yki~n~~~~~~~~~~~   80 (160)
                      |||+.|+..|+.++|+|||.+||||||+||||.+++|+.|||++++    ++                            
T Consensus       143 vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~----~~----------------------------  190 (358)
T KOG1487|consen  143 VLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTG----TH----------------------------  190 (358)
T ss_pred             EeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeec----ch----------------------------
Confidence            6899999999999999999999999999999999999999999988    55                            


Q ss_pred             cccCCCcccCHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhcCcceeceEEEEecCCCCCHHHHHHHhcCCCceeeC
Q psy7060          81 NSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVR  160 (160)
Q Consensus        81 ~~~~~~~~~~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~nrvY~P~iyv~NKiD~is~eevd~i~~~p~~v~is  160 (160)
                              ++-++++++|.|||+|||++.+|.|+|+|||||++++||+|+||||++||||++|+||+|-+.+.||+|+||
T Consensus       191 --------LdlD~~rsil~eyR~hsAdi~Lr~DaT~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdii~~iphavpIS  262 (358)
T KOG1487|consen  191 --------LDLDLQRSILSEYRIHSADIALRFDATADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDIIYTIPHAVPIS  262 (358)
T ss_pred             --------hhHHHHHHHHHHhhhcchheeeecCcchhhhhhhhccCceeeeeeeeecccceeeeeccceeeeccceeecc
Confidence                    889999999999999999999999999999999999999999999999999999999999999999999997

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=100.00  E-value=5.6e-35  Score=234.98  Aligned_cols=124  Identities=64%  Similarity=1.003  Sum_probs=118.6

Q ss_pred             CCCCCCchHHHHHHHHHHHhcCceeccCCCCeEEEEecCcceEEecccCCchhhHHHHHHHHHHhhhhhhHHhhhcCccc
Q psy7060           1 MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAF   80 (160)
Q Consensus         1 vLDa~k~~~q~~~le~ELe~~GIrLnkk~p~I~ikkk~~GGI~i~~t~~lt~~~~~~v~~~l~~yki~n~~~~~~~~~~~   80 (160)
                      |+|++.+..|+..++++|+++||++|+++|.|.|+++..|||+|++++++++                            
T Consensus        84 V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~----------------------------  135 (233)
T cd01896          84 VLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTK----------------------------  135 (233)
T ss_pred             EecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCC----------------------------
Confidence            5788888779999999999999999999999999999999999999888877                            


Q ss_pred             cccCCCcccCHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhcCcceeceEEEEecCCCCCHHHHHHHhcCCCceeeC
Q psy7060          81 NSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVVR  160 (160)
Q Consensus        81 ~~~~~~~~~~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~nrvY~P~iyv~NKiD~is~eevd~i~~~p~~v~is  160 (160)
                              +|+++|++||+|||||||+|.++|++|+|||||+|+|||+|+||++|+||+|+.+.++++.+++.|+.+++|
T Consensus       136 --------~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~~~~~~~~~~~S  207 (233)
T cd01896         136 --------LDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDLLARQPNSVVIS  207 (233)
T ss_pred             --------CCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHHHhcCCCEEEEc
Confidence                    999999999999999999999999999999999999999999999999999999999999999999888876

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.92  E-value=1.5e-10  Score=99.35  Aligned_cols=118  Identities=19%  Similarity=0.050  Sum_probs=85.0

Q ss_pred             chHHHHHHHHHHHhc-CceeccCCCCeEEEEecCcceEEecccCCchhhHHHHHHHHHHhhhhhhHHhhhcCccccccCC
Q psy7060           7 QDVQRGLLEKELESV-GIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAFNSTCP   85 (160)
Q Consensus         7 ~~~q~~~le~ELe~~-GIrLnkk~p~I~ikkk~~GGI~i~~t~~lt~~~~~~v~~~l~~yki~n~~~~~~~~~~~~~~~~   85 (160)
                      +..|...++.||+.. ...++++.+.+. ++..+||..++.+....                                ..
T Consensus       127 p~~d~~~i~~El~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------------------------------~~  173 (318)
T cd01899         127 PLEDIEFLENEIDMWIYGILEKNWEKIV-RKADAEKTDIVEALSEQ--------------------------------LS  173 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCccHHHHHHHH--------------------------------Hh
Confidence            355889999999986 777788877777 44455555544322110                                01


Q ss_pred             CcccCHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhcCcceeceEEEEecCCCCCHHHHHH-H-hc--CCCceeeC
Q psy7060          86 LTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVYLPCIYAYNKIDQISIEEVDR-I-AR--QPNSVVVR  160 (160)
Q Consensus        86 ~~~~~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~nrvY~P~iyv~NKiD~is~eevd~-i-~~--~p~~v~is  160 (160)
                      +-+++++.|+.+| ++++++|.+.++++.++++|.+++..  .++|+|||+||+|+.+.++... + ..  .+..+++|
T Consensus       174 ~~~~~~~~v~~~L-~~~~~~~~~~~~~~~~~~~~~~~~ll--t~KPvI~VlNK~Dl~~~~~~~~~l~~~~~~~~iI~iS  249 (318)
T cd01899         174 GFGVNEKDVIEAL-EELELPEDLSKWTDEDLLRLARALRK--RSKPMVIAANKADIPDAENNISKLRLKYPDEIVVPTS  249 (318)
T ss_pred             hccccHHHHHHHH-HhCCCCCcccCCCHHHHHHHHHHHHh--cCCcEEEEEEHHHccChHHHHHHHHhhCCCCeEEEEe
Confidence            1248899999999 55999999999999999999999985  4589999999999876655332 2 22  33456665

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.70  E-value=5.4e-09  Score=92.14  Aligned_cols=116  Identities=22%  Similarity=0.236  Sum_probs=78.6

Q ss_pred             chHHHHHHHHHHHhc--CceeccCCCCeEEEEecCcceEEecccCCchhhHHHHHHHHHHhhhhhhHHhhhcCccccccC
Q psy7060           7 QDVQRGLLEKELESV--GIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAFNSTC   84 (160)
Q Consensus         7 ~~~q~~~le~ELe~~--GIrLnkk~p~I~ikkk~~GGI~i~~t~~lt~~~~~~v~~~l~~yki~n~~~~~~~~~~~~~~~   84 (160)
                      +..|...++.||+..  ++ ++|+.+.+ .++.++|+..+..          .++..|.-                    
T Consensus       130 p~~d~~~i~~EL~~~d~~~-~~k~~~~~-~~~~~~~~~~~~~----------~~~~~l~~--------------------  177 (396)
T PRK09602        130 PVEDIKFLEEELDMWIYGI-LEKNWEKF-SRKAQAEKFDIEE----------ALAEQLSG--------------------  177 (396)
T ss_pred             HHHHHHHHHHHHHHHhHHH-HHHHHHHH-HHHHhcCCcchHH----------HHHHHHhh--------------------
Confidence            356899999999985  88 77777777 4444455522111          11111111                    


Q ss_pred             CCcccCHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhcCcce-eceEEEEecCCCCC-HHHHHHHhcC--CCceeeC
Q psy7060          85 PLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVY-LPCIYAYNKIDQIS-IEEVDRIARQ--PNSVVVR  160 (160)
Q Consensus        85 ~~~~~~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~nrvY-~P~iyv~NKiD~is-~eevd~i~~~--p~~v~is  160 (160)
                        -+++++.|+.+|++|++. |.+...   +.+|+.++...++.+ +|+|||+||+|..+ .+.++.+.++  +..++||
T Consensus       178 --~~~~e~~v~~~L~~~g~~-~~~~~~---~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~l~~i~~~~~~~vvpIS  251 (396)
T PRK09602        178 --LGINEEHVKEALRELGLP-EDPSKW---TDEDLLELARELRKISKPMVIAANKADLPPAEENIERLKEEKYYIVVPTS  251 (396)
T ss_pred             --hccCHHHHHHHHHHcCCc-CcccCC---CHHHHHHHHHhhhhcCCCEEEEEEchhcccchHHHHHHHhcCCCcEEEEc
Confidence              137899999999999998 665554   457777777777665 99999999999874 4446666555  4567776

>KOG1486|consensus

Probab=94.92  E-value=0.0069  Score=54.40  Aligned_cols=19  Identities=68%  Similarity=0.945  Sum_probs=17.5

Q ss_pred             hHHHHHHHHHHhhhhhhHH
Q psy7060          54 NEKLVQLILHEYKIFNAEQ   72 (160)
Q Consensus        54 ~~~~v~~~l~~yki~n~~~   72 (160)
                      |+++++.|||+||||||+-
T Consensus       199 ~ek~i~~ILheykI~Naev  217 (364)
T KOG1486|consen  199 DEKLIYTILHEYKIHNAEV  217 (364)
T ss_pred             cHHHHHHHHHHHeeccceE
Confidence            5899999999999999984

>COG2262 HflX GTPases [General function prediction only]

Probab=94.55  E-value=0.033  Score=51.24  Aligned_cols=31  Identities=39%  Similarity=0.651  Sum_probs=24.2

Q ss_pred             eceEEEEecCCCCCHHH-HHHHhcC-CCceeeC
Q psy7060         130 LPCIYAYNKIDQISIEE-VDRIARQ-PNSVVVR  160 (160)
Q Consensus       130 ~P~iyv~NKiD~is~ee-vd~i~~~-p~~v~is  160 (160)
                      +|.|+|+||||+++.++ +..+.+. |+.|+||
T Consensus       305 ~p~i~v~NKiD~~~~~~~~~~~~~~~~~~v~iS  337 (411)
T COG2262         305 IPIILVLNKIDLLEDEEILAELERGSPNPVFIS  337 (411)
T ss_pred             CCEEEEEecccccCchhhhhhhhhcCCCeEEEE
Confidence            89999999999997765 5555444 5678887

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=90.88  E-value=0.38  Score=42.03  Aligned_cols=81  Identities=22%  Similarity=0.447  Sum_probs=43.0

Q ss_pred             ccccccCCC-cccCHHH---HHHHHHHcCccceEEEee-cCCC----hhHH---HHHHhcCcc-eeceEEEEecCCCCCH
Q psy7060          78 IAFNSTCPL-TQVNEKL---VQLILHEYKIFNAEVLFR-EDCN----ADEL---IDVINANRV-YLPCIYAYNKIDQISI  144 (160)
Q Consensus        78 ~~~~~~~~~-~~~~e~~---V~~IL~EYkI~NA~V~ir-ed~t----~Ddl---iDvi~~nrv-Y~P~iyv~NKiD~is~  144 (160)
                      +.|--|+-+ ..++.+.   .+..+.+  +.+|++.+- =|++    .+++   .+.+..-.. =+|+|+|+||+|+.+.
T Consensus       239 i~l~DT~G~~~~l~~~lie~f~~tle~--~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~  316 (351)
T TIGR03156       239 VLLTDTVGFIRDLPHELVAAFRATLEE--VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE  316 (351)
T ss_pred             EEEEecCcccccCCHHHHHHHHHHHHH--HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh
Confidence            344556555 3334444   4444554  456655432 2332    2222   233332111 2699999999999877


Q ss_pred             HHHHHHhc-CCCceeeC
Q psy7060         145 EEVDRIAR-QPNSVVVR  160 (160)
Q Consensus       145 eevd~i~~-~p~~v~is  160 (160)
                      +++..+.. .|..+++|
T Consensus       317 ~~v~~~~~~~~~~i~iS  333 (351)
T TIGR03156       317 PRIERLEEGYPEAVFVS  333 (351)
T ss_pred             HhHHHHHhCCCCEEEEE
Confidence            77665532 24566665

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01858 NGP_1 NGP-1

Probab=90.23  E-value=0.35  Score=36.11  Aligned_cols=19  Identities=21%  Similarity=0.176  Sum_probs=16.2

Q ss_pred             eceEEEEecCCCCCHHHHH
Q psy7060         130 LPCIYAYNKIDQISIEEVD  148 (160)
Q Consensus       130 ~P~iyv~NKiD~is~eevd  148 (160)
                      +|.|.|+||+|+.+.+++.
T Consensus        40 ~p~ilVlNKiDl~~~~~~~   58 (157)
T cd01858          40 KHLIFVLNKCDLVPTWVTA   58 (157)
T ss_pred             CCEEEEEEchhcCCHHHHH
Confidence            7999999999999876554

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=90.15  E-value=0.4  Score=35.38  Aligned_cols=32  Identities=19%  Similarity=0.135  Sum_probs=21.6

Q ss_pred             HHHHHHhcCcceeceEEEEecCCCCCHHHHHH
Q psy7060         118 ELIDVINANRVYLPCIYAYNKIDQISIEEVDR  149 (160)
Q Consensus       118 dliDvi~~nrvY~P~iyv~NKiD~is~eevd~  149 (160)
                      ++...+.....-+|+|+|+||+|+.+.+++..
T Consensus        31 ~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~   62 (141)
T cd01857          31 DLERYVKEVDPRKKNILLLNKADLLTEEQRKA   62 (141)
T ss_pred             HHHHHHHhccCCCcEEEEEechhcCCHHHHHH
Confidence            44454443223479999999999987766544

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=89.46  E-value=0.43  Score=37.57  Aligned_cols=21  Identities=29%  Similarity=0.414  Sum_probs=17.6

Q ss_pred             eceEEEEecCCCCCHHHHHHH
Q psy7060         130 LPCIYAYNKIDQISIEEVDRI  150 (160)
Q Consensus       130 ~P~iyv~NKiD~is~eevd~i  150 (160)
                      .|+|+|+||+|+.+.+++...
T Consensus        31 kp~IlVlNK~DL~~~~~l~~~   51 (172)
T cd04178          31 KKLVLVLNKIDLVPKENVEKW   51 (172)
T ss_pred             CCEEEEEehhhcCCHHHHHHH
Confidence            699999999999987766543

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG1160 Predicted GTPases [General function prediction only]

Probab=88.68  E-value=1  Score=41.93  Aligned_cols=48  Identities=25%  Similarity=0.389  Sum_probs=29.1

Q ss_pred             ecCCChhH--HHHHHhcCcceeceEEEEecCCCCCHHHHHH-HhcC--CCceeeC
Q psy7060         111 REDCNADE--LIDVINANRVYLPCIYAYNKIDQISIEEVDR-IARQ--PNSVVVR  160 (160)
Q Consensus       111 red~t~Dd--liDvi~~nrvY~P~iyv~NKiD~is~eevd~-i~~~--p~~v~is  160 (160)
                      ++-+|.+|  +.+.+.  +.-+|+|.|+||+|-...|+... ..++  ...++||
T Consensus        94 ~~Git~~D~~ia~~Lr--~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~IS  146 (444)
T COG1160          94 REGITPADEEIAKILR--RSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPIS  146 (444)
T ss_pred             CCCCCHHHHHHHHHHH--hcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEee
Confidence            55556544  334443  44489999999999885554332 3443  3556665

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=88.29  E-value=1.7  Score=31.64  Aligned_cols=21  Identities=19%  Similarity=0.118  Sum_probs=15.6

Q ss_pred             HhcCcceeceEEEEecCCCCC
Q psy7060         123 INANRVYLPCIYAYNKIDQIS  143 (160)
Q Consensus       123 i~~nrvY~P~iyv~NKiD~is  143 (160)
                      +....--+|+|+|.||+|+.+
T Consensus        96 i~~~~~~~piilv~nK~Dl~~  116 (174)
T smart00174       96 VKHFCPNTPIILVGTKLDLRE  116 (174)
T ss_pred             HHhhCCCCCEEEEecChhhhh
Confidence            433344689999999999853

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=86.98  E-value=1.7  Score=30.83  Aligned_cols=21  Identities=33%  Similarity=0.415  Sum_probs=15.4

Q ss_pred             ceEEEEecCCCCC----HHHHHHHh
Q psy7060         131 PCIYAYNKIDQIS----IEEVDRIA  151 (160)
Q Consensus       131 P~iyv~NKiD~is----~eevd~i~  151 (160)
                      |+|+|.||+|+..    .+++.+++
T Consensus        90 p~ilv~NK~Dl~~~~~~~~~~~~~~  114 (142)
T TIGR02528        90 PVIGLVTKIDLAEADVDIERAKELL  114 (142)
T ss_pred             CeEEEEEeeccCCcccCHHHHHHHH
Confidence            9999999999864    24445544

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=86.62  E-value=0.62  Score=34.79  Aligned_cols=19  Identities=26%  Similarity=0.244  Sum_probs=16.3

Q ss_pred             eceEEEEecCCCCCHHHHH
Q psy7060         130 LPCIYAYNKIDQISIEEVD  148 (160)
Q Consensus       130 ~P~iyv~NKiD~is~eevd  148 (160)
                      +|.|+|+||+|+.+.+++.
T Consensus        30 ~p~IiVlNK~Dl~~~~~~~   48 (155)
T cd01849          30 KKLILVLNKADLVPKEVLR   48 (155)
T ss_pred             CCEEEEEechhcCCHHHHH
Confidence            6999999999998876554

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=86.17  E-value=0.77  Score=33.11  Aligned_cols=22  Identities=41%  Similarity=0.566  Sum_probs=17.9

Q ss_pred             ceeceEEEEecCCCCCHHHHHH
Q psy7060         128 VYLPCIYAYNKIDQISIEEVDR  149 (160)
Q Consensus       128 vY~P~iyv~NKiD~is~eevd~  149 (160)
                      ..+|.++|.||+|+.+.+++..
T Consensus       119 ~~~p~ivv~NK~Dl~~~~~~~~  140 (176)
T cd01881         119 TAKPVIYVLNKIDLDDAEELEE  140 (176)
T ss_pred             hhCCeEEEEEchhcCchhHHHH
Confidence            4789999999999987655544

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01878 HflX HflX subfamily

Probab=86.05  E-value=2  Score=32.79  Aligned_cols=19  Identities=42%  Similarity=0.683  Sum_probs=15.9

Q ss_pred             eceEEEEecCCCCCHHHHH
Q psy7060         130 LPCIYAYNKIDQISIEEVD  148 (160)
Q Consensus       130 ~P~iyv~NKiD~is~eevd  148 (160)
                      +|+++|.||+|+...++..
T Consensus       154 ~~viiV~NK~Dl~~~~~~~  172 (204)
T cd01878         154 IPMILVLNKIDLLDDEELE  172 (204)
T ss_pred             CCEEEEEEccccCChHHHH
Confidence            6999999999998765544

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PTZ00258 GTP-binding protein; Provisional

Probab=85.41  E-value=2.3  Score=38.56  Aligned_cols=53  Identities=26%  Similarity=0.104  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHcCccceEEEeecCCChhHHHHHHhcC---cceeceEEEEecC--CC--CCHHHHHHH
Q psy7060          91 EKLVQLILHEYKIFNAEVLFREDCNADELIDVINAN---RVYLPCIYAYNKI--DQ--ISIEEVDRI  150 (160)
Q Consensus        91 e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~n---rvY~P~iyv~NKi--D~--is~eevd~i  150 (160)
                      .+.|+..|.+++..++     .+.+.+|  ..+..+   ..++|.|||.||.  |+  .+.+.++.+
T Consensus       186 l~~v~~~L~~~~~~~~-----~~~~~~e--~~~l~~l~llt~KP~iyv~N~~E~D~~~~~~~~~~~l  245 (390)
T PTZ00258        186 LKKVLEWLEEGKPVRD-----GDWTDKE--IEILNEYQLLTAKPMIYLVNMSEKDFIRQKNKWLAKI  245 (390)
T ss_pred             HHHHHHHHHcCCcccc-----CCCCHHH--HHHHHHhchhhcCCEEEEEECchhhhcccchHHHHHH
Confidence            3678999999888765     2445554  333333   6799999999999  86  244444444

>cd01868 Rab11_like Rab11-like

Probab=83.15  E-value=2  Score=31.11  Aligned_cols=23  Identities=26%  Similarity=0.213  Sum_probs=17.6

Q ss_pred             eceEEEEecCCCCC-----HHHHHHHhc
Q psy7060         130 LPCIYAYNKIDQIS-----IEEVDRIAR  152 (160)
Q Consensus       130 ~P~iyv~NKiD~is-----~eevd~i~~  152 (160)
                      +|+++|.||+|+..     .++...+++
T Consensus       109 ~pi~vv~nK~Dl~~~~~~~~~~~~~~~~  136 (165)
T cd01868         109 IVIMLVGNKSDLRHLRAVPTEEAKAFAE  136 (165)
T ss_pred             CeEEEEEECccccccccCCHHHHHHHHH
Confidence            79999999999863     356666655

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01863 Rab18 Rab18 subfamily

Probab=83.04  E-value=11  Score=27.00  Aligned_cols=28  Identities=29%  Similarity=0.202  Sum_probs=20.9

Q ss_pred             cceeceEEEEecCCCC----CHHHHHHHhcCC
Q psy7060         127 RVYLPCIYAYNKIDQI----SIEEVDRIARQP  154 (160)
Q Consensus       127 rvY~P~iyv~NKiD~i----s~eevd~i~~~p  154 (160)
                      ....|.++|.||+|+.    +.++..++++..
T Consensus       104 ~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~  135 (161)
T cd01863         104 NNDIVKMLVGNKIDKENREVTREEGLKFARKH  135 (161)
T ss_pred             CCCCcEEEEEECCcccccccCHHHHHHHHHHc
Confidence            4568999999999997    556776665543

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01856 YlqF YlqF

Probab=83.02  E-value=1.2  Score=33.80  Aligned_cols=18  Identities=28%  Similarity=0.289  Sum_probs=15.1

Q ss_pred             eceEEEEecCCCCCHHHH
Q psy7060         130 LPCIYAYNKIDQISIEEV  147 (160)
Q Consensus       130 ~P~iyv~NKiD~is~eev  147 (160)
                      .|.|+|+||+|+.+.+++
T Consensus        47 k~~ilVlNK~Dl~~~~~~   64 (171)
T cd01856          47 KPRIIVLNKADLADPKKT   64 (171)
T ss_pred             CCEEEEEehhhcCChHHH
Confidence            599999999999866554

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=82.98  E-value=0.69  Score=32.37  Aligned_cols=20  Identities=30%  Similarity=0.302  Sum_probs=16.2

Q ss_pred             ceeceEEEEecCCCCCHHHH
Q psy7060         128 VYLPCIYAYNKIDQISIEEV  147 (160)
Q Consensus       128 vY~P~iyv~NKiD~is~eev  147 (160)
                      .-.|.+++.||+|+.+.++.
T Consensus       106 ~~~~vi~v~nK~D~~~~~~~  125 (157)
T cd04164         106 ADKPIIVVLNKSDLLPDSEL  125 (157)
T ss_pred             cCCCEEEEEEchhcCCcccc
Confidence            34799999999999876554

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=82.63  E-value=1.4  Score=35.92  Aligned_cols=34  Identities=26%  Similarity=0.334  Sum_probs=25.7

Q ss_pred             HHHHHHHHHhhhhhhHHhhhcCccccccCCCcccCHHHHHHHHHH
Q psy7060          56 KLVQLILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHE  100 (160)
Q Consensus        56 ~~v~~~l~~yki~n~~~~~~~~~~~~~~~~~~~~~e~~V~~IL~E  100 (160)
                      ++|+.+|++|+||||+=+-.|.           ++.+++...+..
T Consensus       139 ~~v~~~l~~~~i~~~~v~~~~~-----------~~~~~~~~~~~~  172 (233)
T cd01896         139 KTIKAILREYKIHNADVLIRED-----------ITVDDLIDVIEG  172 (233)
T ss_pred             HHHHHHHHHhCeeeEEEEEccC-----------CCHHHHHHHHhC
Confidence            6899999999999998876666           445555555543

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=82.01  E-value=1.4  Score=33.27  Aligned_cols=26  Identities=31%  Similarity=0.390  Sum_probs=19.3

Q ss_pred             ceeceEEEEecCCCC-----CHHHHHHHhcC
Q psy7060         128 VYLPCIYAYNKIDQI-----SIEEVDRIARQ  153 (160)
Q Consensus       128 vY~P~iyv~NKiD~i-----s~eevd~i~~~  153 (160)
                      .-+|+++|.||+|+.     +.++...+++.
T Consensus       106 ~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~  136 (172)
T cd04141         106 EDIPLVLVGNKVDLESQRQVTTEEGRNLARE  136 (172)
T ss_pred             CCCCEEEEEEChhhhhcCccCHHHHHHHHHH
Confidence            458999999999974     45666666543

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01894 EngA1 EngA1 subfamily

Probab=81.98  E-value=1.8  Score=30.33  Aligned_cols=18  Identities=39%  Similarity=0.553  Sum_probs=15.3

Q ss_pred             eceEEEEecCCCCCHHHH
Q psy7060         130 LPCIYAYNKIDQISIEEV  147 (160)
Q Consensus       130 ~P~iyv~NKiD~is~eev  147 (160)
                      .|+++|.||+|+...++.
T Consensus       106 ~piiiv~nK~D~~~~~~~  123 (157)
T cd01894         106 KPVILVVNKVDNIKEEDE  123 (157)
T ss_pred             CCEEEEEECcccCChHHH
Confidence            799999999999876554

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=81.80  E-value=10  Score=29.16  Aligned_cols=28  Identities=25%  Similarity=0.450  Sum_probs=21.9

Q ss_pred             ceeceEEEEecCCCC-----CHHHHHHHhcCCC
Q psy7060         128 VYLPCIYAYNKIDQI-----SIEEVDRIARQPN  155 (160)
Q Consensus       128 vY~P~iyv~NKiD~i-----s~eevd~i~~~p~  155 (160)
                      ..+|.|+|.||+|+.     +.+++..+++..+
T Consensus       109 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~  141 (201)
T cd04107         109 EPIPCLLLANKCDLKKRLAKDGEQMDQFCKENG  141 (201)
T ss_pred             CCCcEEEEEECCCcccccccCHHHHHHHHHHcC
Confidence            467999999999985     6678888766543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04157 Arl6 Arl6 subfamily

Probab=81.19  E-value=8.7  Score=27.34  Aligned_cols=15  Identities=27%  Similarity=0.454  Sum_probs=13.3

Q ss_pred             eeceEEEEecCCCCC
Q psy7060         129 YLPCIYAYNKIDQIS  143 (160)
Q Consensus       129 Y~P~iyv~NKiD~is  143 (160)
                      -+|+++|.||+|+.+
T Consensus       104 ~~p~iiv~NK~Dl~~  118 (162)
T cd04157         104 RVPILFFANKMDLPD  118 (162)
T ss_pred             CCCEEEEEeCccccC
Confidence            489999999999874

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04171 SelB SelB subfamily

Probab=80.76  E-value=16  Score=25.82  Aligned_cols=15  Identities=13%  Similarity=0.085  Sum_probs=13.0

Q ss_pred             eceEEEEecCCCCCH
Q psy7060         130 LPCIYAYNKIDQISI  144 (160)
Q Consensus       130 ~P~iyv~NKiD~is~  144 (160)
                      .|.|++.||+|+.+.
T Consensus       105 ~~~ilv~NK~Dl~~~  119 (164)
T cd04171         105 KRGLVVLTKADLVDE  119 (164)
T ss_pred             CcEEEEEECccccCH
Confidence            399999999999864

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01862 Rab7 Rab7 subfamily

Probab=80.69  E-value=1.9  Score=31.04  Aligned_cols=26  Identities=23%  Similarity=0.279  Sum_probs=20.0

Q ss_pred             eeceEEEEecCCCC-----CHHHHHHHhcCC
Q psy7060         129 YLPCIYAYNKIDQI-----SIEEVDRIARQP  154 (160)
Q Consensus       129 Y~P~iyv~NKiD~i-----s~eevd~i~~~p  154 (160)
                      -+|.++|.||+|+.     +.++++++.+..
T Consensus       109 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~  139 (172)
T cd01862         109 NFPFVVLGNKIDLEEKRQVSTKKAQQWCQSN  139 (172)
T ss_pred             CceEEEEEECcccccccccCHHHHHHHHHHc
Confidence            57999999999997     457777665443

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=80.67  E-value=8.7  Score=27.58  Aligned_cols=25  Identities=40%  Similarity=0.401  Sum_probs=18.1

Q ss_pred             eeceEEEEecCCCCC-----HHHHHHHhcC
Q psy7060         129 YLPCIYAYNKIDQIS-----IEEVDRIARQ  153 (160)
Q Consensus       129 Y~P~iyv~NKiD~is-----~eevd~i~~~  153 (160)
                      ..|.++|.||+|+..     .++...+++.
T Consensus       105 ~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~  134 (164)
T smart00173      105 DVPIVLVGNKCDLESERVVSTEEGKELARQ  134 (164)
T ss_pred             CCCEEEEEECccccccceEcHHHHHHHHHH
Confidence            579999999999853     3555555543

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01864 Rab19 Rab19 subfamily

Probab=80.26  E-value=14  Score=26.81  Aligned_cols=26  Identities=23%  Similarity=0.164  Sum_probs=18.8

Q ss_pred             ceeceEEEEecCCCCC-----HHHHHHHhcC
Q psy7060         128 VYLPCIYAYNKIDQIS-----IEEVDRIARQ  153 (160)
Q Consensus       128 vY~P~iyv~NKiD~is-----~eevd~i~~~  153 (160)
                      .-+|.|+|.||+|+..     .++...+++.
T Consensus       107 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  137 (165)
T cd01864         107 SNVVLLLIGNKCDLEEQREVLFEEACTLAEK  137 (165)
T ss_pred             CCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence            4579999999999863     3555566554

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	160
4a9a_A	376	Structure Of Rbg1 In Complex With Tma46 Dfrp Domain		2e-21

>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain Length = 376

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 84/160 (52%), Gaps = 37/160 (23%)
Query: 1   MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQL 60
           +LD  K    + ++EKELE VGIRLNK  P+I  K+K+ G                    
Sbjct: 156 ILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG-------------------- 195
Query: 61  ILHEYKIFNAEQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELI 120
                           GI+  +T PLT +    ++ ++ EY+I +AE+ FR D   D+LI
Sbjct: 196 ----------------GISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLI 239
Query: 121 DVINAN-RVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV 159
           DV+ A+ R Y+P IY  NKID +SIEE++ + R PN+V +
Sbjct: 240 DVLEASSRRYMPAIYVLNKIDSLSIEELELLYRIPNAVPI 279

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	160
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.87
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.64
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	88.76
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	88.29
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	86.82
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	85.59
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	84.48
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	84.18
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	83.97
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	83.92
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	83.89
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	83.75
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	83.66
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	83.51
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	83.19
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	83.07
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	82.83
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	82.55
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	82.51
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	82.48
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	82.28
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	81.96
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	81.64
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	81.36
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	81.09
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	80.89
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	80.86
2ged_A	193	SR-beta, signal recognition particle receptor beta	80.42
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	80.17

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.87  E-value=7.4e-22  Score=170.01  Aligned_cols=124  Identities=45%  Similarity=0.786  Sum_probs=117.4

Q ss_pred             CCCCCCchHHHHHHHHHHHhcCceeccCCCCeEEEEecCcceEEecccCCchhhHHHHHHHHHHhhhhhhHHhhhcCccc
Q psy7060           1 MLDATKQDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAF   80 (160)
Q Consensus         1 vLDa~k~~~q~~~le~ELe~~GIrLnkk~p~I~ikkk~~GGI~i~~t~~lt~~~~~~v~~~l~~yki~n~~~~~~~~~~~   80 (160)
                      |+|++.+..+...+++||+..|++|+++|+.+.++++++||+.+..+.++++                            
T Consensus       156 vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~----------------------------  207 (376)
T 4a9a_A          156 ILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTH----------------------------  207 (376)
T ss_dssp             EEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSS----------------------------
T ss_pred             ccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhh----------------------------
Confidence            5799988889999999999999999999999999999999999988777765                            


Q ss_pred             cccCCCcccCHHHHHHHHHHcCccceEEEeecCCChhHHHHHHh-cCcceeceEEEEecCCCCCHHHHHHHhcCCCceee
Q psy7060          81 NSTCPLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVIN-ANRVYLPCIYAYNKIDQISIEEVDRIARQPNSVVV  159 (160)
Q Consensus        81 ~~~~~~~~~~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~-~nrvY~P~iyv~NKiD~is~eevd~i~~~p~~v~i  159 (160)
                              +++++++.++++|+++|+.++++++++.||++|++. ++|.|+||++++||+|+.++|+++.+.+.|+.+++
T Consensus       208 --------l~~eeik~il~~~~lt~kpv~~~~nv~eddl~d~~~~~~~~~~p~i~v~nKid~~~~eele~l~~~~~~~~i  279 (376)
T 4a9a_A          208 --------LGNDEIRAVMSEYRINSAEIAFRCDATVDDLIDVLEASSRRYMPAIYVLNKIDSLSIEELELLYRIPNAVPI  279 (376)
T ss_dssp             --------CCHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHTTTTCEEECEEEEEECGGGSCHHHHHHHTTSTTEEEC
T ss_pred             --------ccHHHHHHHHHHhcccCCCeeecccCCHHHHHHHHHHHHhhccceEEEEecccccCHHHHHHHhcccchhhh
Confidence                    999999999999999999999999999999999996 69999999999999999999999999999999988


Q ss_pred             C
Q psy7060         160 R  160 (160)
Q Consensus       160 s  160 (160)
                      |
T Consensus       280 s  280 (376)
T 4a9a_A          280 S  280 (376)
T ss_dssp             C
T ss_pred             h
Confidence            6

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.64  E-value=2.4e-09  Score=91.55  Aligned_cols=116  Identities=25%  Similarity=0.292  Sum_probs=85.2

Q ss_pred             chHHHHHHHHHHHhc--CceeccCCCCeEEEEecCcceEEecccCCchhhHHHHHHHHHHhhhhhhHHhhhcCccccccC
Q psy7060           7 QDVQRGLLEKELESV--GIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAFNSTC   84 (160)
Q Consensus         7 ~~~q~~~le~ELe~~--GIrLnkk~p~I~ikkk~~GGI~i~~t~~lt~~~~~~v~~~l~~yki~n~~~~~~~~~~~~~~~   84 (160)
                      +..+...++.||...  |+ +++..+++. ++.++||+.+.....                      +.-+|        
T Consensus       127 p~~d~~~i~~EL~~~d~~~-l~~~~~~~~-k~~~~~~~~~~~~~~----------------------~~l~g--------  174 (397)
T 1wxq_A          127 PVEDIEFLEREIDYWIYGI-LSKGWDKFA-KRIKLQKIKLESAIA----------------------EHLSG--------  174 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHTTTHHHH-STTTSSCCCHHHHHH----------------------HHTGG--------
T ss_pred             cHHHHHHHHHHHHHHHHHH-HhhhHHHHH-HHHhhcCccHHHHHH----------------------HHhcc--------
Confidence            355788899999766  77 888888887 555556654322111                      11111        


Q ss_pred             CCcccCHHHHHHHHHHcCccceEEEeecCCChhHHHHHHhcCcce-eceEEEEecCCCCCHHHHHHHhcC----C-Ccee
Q psy7060          85 PLTQVNEKLVQLILHEYKIFNAEVLFREDCNADELIDVINANRVY-LPCIYAYNKIDQISIEEVDRIARQ----P-NSVV  158 (160)
Q Consensus        85 ~~~~~~e~~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~nrvY-~P~iyv~NKiD~is~eevd~i~~~----p-~~v~  158 (160)
                        .+.+++.++.+|++|+++++    ..+.+.+|+.++....+.+ +|+|||+||+|+.+.+.++.+.+.    + ..|+
T Consensus       175 --~~~~~~~~~~~l~~l~~~~~----~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~  248 (397)
T 1wxq_A          175 --IGVNENDVWEAMHKLNLPED----PTKWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQIKRLVREEEKRGYIVIP  248 (397)
T ss_dssp             --GTCCHHHHHHHHHHTTCCSC----GGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             --cCCCHHHHHHHHHHhccCCc----cccCCHHHHHHHHHhhhccCCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEE
Confidence              23789999999999999999    5689999999999888887 999999999999877777776332    2 3566


Q ss_pred             eC
Q psy7060         159 VR  160 (160)
Q Consensus       159 is  160 (160)
                      ||
T Consensus       249 iS  250 (397)
T 1wxq_A          249 TS  250 (397)
T ss_dssp             EC
T ss_pred             Ee
Confidence            65

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=88.76  E-value=0.097  Score=45.54  Aligned_cols=43  Identities=30%  Similarity=0.322  Sum_probs=28.6

Q ss_pred             HHHHHHHHcCccceEEEeecCCChhHHHHHHhcC--cceeceEEEEecC
Q psy7060          93 LVQLILHEYKIFNAEVLFREDCNADELIDVINAN--RVYLPCIYAYNKI  139 (160)
Q Consensus        93 ~V~~IL~EYkI~NA~V~ired~t~DdliDvi~~n--rvY~P~iyv~NKi  139 (160)
                      .++..|.+++..   +....+.+.+| ++.|.+.  ..++|++|++|+.
T Consensus       188 ~i~~~L~e~~~~---~~~~~~~~~~e-~e~i~~~~llt~KPviy~~Nv~  232 (396)
T 2ohf_A          188 KVKSWVIDQKKP---VRFYHDWNDKE-IEVLNKHLFLTSKPMVYLVNLS  232 (396)
T ss_dssp             HHHHHTTC--CC---GGGCCCCCHHH-HHHHHHHCCGGGSCEEEEEECC
T ss_pred             HHHHHHHhcCcc---hhhcccCCHHH-HHHHHHHHHHhCCceEEEEEec
Confidence            367778888431   11134789997 4555654  4889999999997

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=88.29  E-value=0.87  Score=31.73  Aligned_cols=28  Identities=21%  Similarity=0.197  Sum_probs=21.7

Q ss_pred             cceeceEEEEecCCCC---CHHHHHHHhcCC
Q psy7060         127 RVYLPCIYAYNKIDQI---SIEEVDRIARQP  154 (160)
Q Consensus       127 rvY~P~iyv~NKiD~i---s~eevd~i~~~p  154 (160)
                      ..-+|.++|.||+|+.   +.+++..+++.-
T Consensus       133 ~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~  163 (198)
T 3t1o_A          133 LDDVPIVIQVNKRDLPDALPVEMVRAVVDPE  163 (198)
T ss_dssp             TTSSCEEEEEECTTSTTCCCHHHHHHHHCTT
T ss_pred             cCCCCEEEEEEchhcccccCHHHHHHHHHhc
Confidence            3567999999999985   567887776553

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=86.82  E-value=0.9  Score=31.20  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=19.7

Q ss_pred             ceeceEEEEecCCCC------CHHHHHHHhc
Q psy7060         128 VYLPCIYAYNKIDQI------SIEEVDRIAR  152 (160)
Q Consensus       128 vY~P~iyv~NKiD~i------s~eevd~i~~  152 (160)
                      .-+|.++|.||+|+.      +.++...+++
T Consensus       117 ~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~  147 (182)
T 1ky3_A          117 ETFPFVILGNKIDAEESKKIVSEKSAQELAK  147 (182)
T ss_dssp             TTCCEEEEEECTTSCGGGCCSCHHHHHHHHH
T ss_pred             CCCcEEEEEECCccccccccCCHHHHHHHHH
Confidence            457999999999984      4567777765

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=85.59  E-value=0.45  Score=33.80  Aligned_cols=15  Identities=13%  Similarity=-0.148  Sum_probs=13.0

Q ss_pred             ceeceEEEEecCCCC
Q psy7060         128 VYLPCIYAYNKIDQI  142 (160)
Q Consensus       128 vY~P~iyv~NKiD~i  142 (160)
                      --.|.++|.||+|+.
T Consensus       110 ~~~piilv~nK~Dl~  124 (184)
T 1m7b_A          110 PNTKMLLVGCKSDLR  124 (184)
T ss_dssp             TTCEEEEEEECGGGG
T ss_pred             CCCCEEEEEEcchhh
Confidence            357999999999985

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=84.48  E-value=1.3  Score=30.65  Aligned_cols=25  Identities=4%  Similarity=-0.161  Sum_probs=19.7

Q ss_pred             ceeceEEEEecCCC-------CCHHHHHHHhc
Q psy7060         128 VYLPCIYAYNKIDQ-------ISIEEVDRIAR  152 (160)
Q Consensus       128 vY~P~iyv~NKiD~-------is~eevd~i~~  152 (160)
                      -.+|.++|.||+|+       ++.++...+++
T Consensus       107 ~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~  138 (178)
T 2iwr_A          107 GGLALALVGTQDRISASSPRVVGDARARALXA  138 (178)
T ss_dssp             CCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH
T ss_pred             CCCCEEEEEECccccccccCcCCHHHHHHHHH
Confidence            36799999999998       35677777754

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=84.18  E-value=1  Score=32.65  Aligned_cols=27  Identities=19%  Similarity=0.224  Sum_probs=19.6

Q ss_pred             HHHHHhcCcceeceEEEEecCCCCCHHHH
Q psy7060         119 LIDVINANRVYLPCIYAYNKIDQISIEEV  147 (160)
Q Consensus       119 liDvi~~nrvY~P~iyv~NKiD~is~eev  147 (160)
                      +.+.+..  ..+|.|+|.||+|+.+.+++
T Consensus       136 ~~~~l~~--~~~p~i~v~nK~Dl~~~~~~  162 (223)
T 4dhe_A          136 MIEWFAP--TGKPIHSLLTKCDKLTRQES  162 (223)
T ss_dssp             HHHHHGG--GCCCEEEEEECGGGSCHHHH
T ss_pred             HHHHHHh--cCCCEEEEEeccccCChhhH
Confidence            3444433  45799999999999987653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=83.97  E-value=1.1  Score=31.97  Aligned_cols=34  Identities=15%  Similarity=0.011  Sum_probs=22.1

Q ss_pred             HHHHHhcCcceeceEEEEecCCCC-------CHHHHHHHhc
Q psy7060         119 LIDVINANRVYLPCIYAYNKIDQI-------SIEEVDRIAR  152 (160)
Q Consensus       119 liDvi~~nrvY~P~iyv~NKiD~i-------s~eevd~i~~  152 (160)
                      ++..+....--+|.++|.||+|+.       +.++...+++
T Consensus       117 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~  157 (194)
T 3reg_A          117 WEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQ  157 (194)
T ss_dssp             HHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHH
Confidence            333444333348999999999985       3466666644

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=83.92  E-value=1  Score=32.77  Aligned_cols=26  Identities=23%  Similarity=0.219  Sum_probs=19.6

Q ss_pred             ceeceEEEEecCCCC-----CHHHHHHHhcC
Q psy7060         128 VYLPCIYAYNKIDQI-----SIEEVDRIARQ  153 (160)
Q Consensus       128 vY~P~iyv~NKiD~i-----s~eevd~i~~~  153 (160)
                      .-+|.++|.||+|+.     +.+++..+++.
T Consensus       133 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~  163 (201)
T 2hup_A          133 SNIVQLLIGNKSDLSELREVSLAEAQSLAEH  163 (201)
T ss_dssp             TTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCccccccccCHHHHHHHHHH
Confidence            347999999999985     45677777543

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=83.89  E-value=1.5  Score=31.52  Aligned_cols=26  Identities=8%  Similarity=0.110  Sum_probs=20.6

Q ss_pred             ceeceEEEEecCCC-------CCHHHHHHHhcC
Q psy7060         128 VYLPCIYAYNKIDQ-------ISIEEVDRIARQ  153 (160)
Q Consensus       128 vY~P~iyv~NKiD~-------is~eevd~i~~~  153 (160)
                      .-+|.++|.||+|+       ++.++...+++.
T Consensus       118 ~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~  150 (184)
T 3ihw_A          118 SEVPMVLVGTQDAISAANPRVIDDSRARKLSTD  150 (184)
T ss_dssp             GGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH
T ss_pred             CCCCEEEEEECcccccccccccCHHHHHHHHHH
Confidence            56899999999998       466777777543

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=83.75  E-value=0.91  Score=30.72  Aligned_cols=25  Identities=32%  Similarity=0.290  Sum_probs=19.0

Q ss_pred             ceeceEEEEecCCCC-----CHHHHHHHhc
Q psy7060         128 VYLPCIYAYNKIDQI-----SIEEVDRIAR  152 (160)
Q Consensus       128 vY~P~iyv~NKiD~i-----s~eevd~i~~  152 (160)
                      .-+|.++|.||+|+.     +.++...+++
T Consensus       107 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  136 (167)
T 1c1y_A          107 EDVPMILVGNKCDLEDERVVGKEQGQNLAR  136 (167)
T ss_dssp             SCCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred             CCCcEEEEEECccccccccCCHHHHHHHHH
Confidence            358999999999985     3466666654

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=83.66  E-value=1.2  Score=32.55  Aligned_cols=26  Identities=38%  Similarity=0.358  Sum_probs=20.0

Q ss_pred             ceeceEEEEecCCCC-----CHHHHHHHhcC
Q psy7060         128 VYLPCIYAYNKIDQI-----SIEEVDRIARQ  153 (160)
Q Consensus       128 vY~P~iyv~NKiD~i-----s~eevd~i~~~  153 (160)
                      ..+|+|+|.||+|+.     +.++...+++.
T Consensus       129 ~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~  159 (195)
T 3cbq_A          129 HDLPVILVGNKSDLARSREVSLEEGRHLAGT  159 (195)
T ss_dssp             SCCCEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred             CCCCEEEEeechhccccCCcCHHHHHHHHHH
Confidence            368999999999986     45677777653

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=83.51  E-value=1.1  Score=31.79  Aligned_cols=24  Identities=13%  Similarity=0.178  Sum_probs=16.6

Q ss_pred             HHHHhcCcceeceEEEEecCCCCC
Q psy7060         120 IDVINANRVYLPCIYAYNKIDQIS  143 (160)
Q Consensus       120 iDvi~~nrvY~P~iyv~NKiD~is  143 (160)
                      ++.+....--+|.++|.||+|+.+
T Consensus       113 ~~~~~~~~~~~piilv~nK~Dl~~  136 (194)
T 2atx_A          113 VPELKEYAPNVPFLLIGTQIDLRD  136 (194)
T ss_dssp             HHHHHHHSTTCCEEEEEECTTSTT
T ss_pred             HHHHHHhCCCCCEEEEEEChhhcc
Confidence            344443223589999999999864

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=83.19  E-value=0.84  Score=35.61  Aligned_cols=21  Identities=24%  Similarity=0.237  Sum_probs=18.2

Q ss_pred             eeceEEEEecCCCCCHHHHHH
Q psy7060         129 YLPCIYAYNKIDQISIEEVDR  149 (160)
Q Consensus       129 Y~P~iyv~NKiD~is~eevd~  149 (160)
                      .+|.|.|+||+|+.+.+++..
T Consensus       144 ~~pvi~V~nK~D~~~~~e~~~  164 (274)
T 3t5d_A          144 KVNIIPLIAKADTLTPEECQQ  164 (274)
T ss_dssp             TSCEEEEESSGGGSCHHHHHH
T ss_pred             cCCEEEEEeccCCCCHHHHHH
Confidence            789999999999998877654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=83.07  E-value=1.2  Score=32.14  Aligned_cols=26  Identities=27%  Similarity=0.181  Sum_probs=19.7

Q ss_pred             ceeceEEEEecCCCC---CHHHHHHHhcC
Q psy7060         128 VYLPCIYAYNKIDQI---SIEEVDRIARQ  153 (160)
Q Consensus       128 vY~P~iyv~NKiD~i---s~eevd~i~~~  153 (160)
                      .-+|.++|.||+|+.   +.+++....+.
T Consensus       123 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~  151 (190)
T 1m2o_B          123 KDVPFVILGNKIDAPNAVSEAELRSALGL  151 (190)
T ss_dssp             TTCCEEEEEECTTSTTCCCHHHHHHHTTC
T ss_pred             cCCCEEEEEECCCCcCCCCHHHHHHHhCC
Confidence            357999999999996   46777666544

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=82.83  E-value=0.64  Score=32.45  Aligned_cols=17  Identities=18%  Similarity=0.497  Sum_probs=14.5

Q ss_pred             eeceEEEEecCCCCCHH
Q psy7060         129 YLPCIYAYNKIDQISIE  145 (160)
Q Consensus       129 Y~P~iyv~NKiD~is~e  145 (160)
                      -+|.++|.||+|+.+.+
T Consensus       133 ~~p~i~v~nK~Dl~~~~  149 (195)
T 3pqc_A          133 NIPFTIVLTKMDKVKMS  149 (195)
T ss_dssp             TCCEEEEEECGGGSCGG
T ss_pred             CCCEEEEEEChhcCChH
Confidence            47999999999998653

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=82.55  E-value=1.1  Score=31.02  Aligned_cols=26  Identities=23%  Similarity=0.235  Sum_probs=19.5

Q ss_pred             eeceEEEEecCCCCC-----HHHHHHHhcCC
Q psy7060         129 YLPCIYAYNKIDQIS-----IEEVDRIARQP  154 (160)
Q Consensus       129 Y~P~iyv~NKiD~is-----~eevd~i~~~p  154 (160)
                      -+|.++|.||+|+.+     .+++..+++..
T Consensus       117 ~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~  147 (181)
T 2efe_B          117 NMVMALAGNKSDLLDARKVTAEDAQTYAQEN  147 (181)
T ss_dssp             TCEEEEEEECTTCTTTCCSCHHHHHHHHHHT
T ss_pred             CCcEEEEEECCcccccccCCHHHHHHHHHHc
Confidence            578999999999863     46677775443

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=82.51  E-value=0.92  Score=31.97  Aligned_cols=16  Identities=25%  Similarity=0.480  Sum_probs=14.4

Q ss_pred             eeceEEEEecCCCCCH
Q psy7060         129 YLPCIYAYNKIDQISI  144 (160)
Q Consensus       129 Y~P~iyv~NKiD~is~  144 (160)
                      -+|.|+|.||+|+.+.
T Consensus       127 ~~piilv~NK~Dl~~~  142 (199)
T 4bas_A          127 RVPFLFFANKMDAAGA  142 (199)
T ss_dssp             BCCEEEEEECTTSTTC
T ss_pred             CCCEEEEEECcCCCCC
Confidence            6899999999999865

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=82.48  E-value=1.7  Score=29.66  Aligned_cols=26  Identities=38%  Similarity=0.354  Sum_probs=19.4

Q ss_pred             eeceEEEEecCCCC-----CHHHHHHHhcCC
Q psy7060         129 YLPCIYAYNKIDQI-----SIEEVDRIARQP  154 (160)
Q Consensus       129 Y~P~iyv~NKiD~i-----s~eevd~i~~~p  154 (160)
                      -+|.++|.||+|+.     +.++...+++..
T Consensus       109 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~  139 (169)
T 3q85_A          109 DLPVILVGNKSDLARSREVSLEEGRHLAGTL  139 (169)
T ss_dssp             CCCEEEEEECTTCGGGCCSCHHHHHHHHHHT
T ss_pred             CCCEEEEeeCcchhhcccCCHHHHHHHHHHc
Confidence            58999999999975     446666665443

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=82.28  E-value=1.1  Score=31.63  Aligned_cols=25  Identities=20%  Similarity=0.154  Sum_probs=16.0

Q ss_pred             ceeceEEEEecCCCCC------HHHHHHHhc
Q psy7060         128 VYLPCIYAYNKIDQIS------IEEVDRIAR  152 (160)
Q Consensus       128 vY~P~iyv~NKiD~is------~eevd~i~~  152 (160)
                      ..+|.++|.||+|+.+      .++...+++
T Consensus       131 ~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~  161 (208)
T 2yc2_C          131 RPLRAVLVANKTDLPPQRHQVRLDMAQDWAT  161 (208)
T ss_dssp             SCCEEEEEEECC-------CCCHHHHHHHHH
T ss_pred             cCCcEEEEEECcccchhhccCCHHHHHHHHH
Confidence            4689999999999876      466666653

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=81.96  E-value=2.1  Score=29.42  Aligned_cols=25  Identities=36%  Similarity=0.359  Sum_probs=19.8

Q ss_pred             ceeceEEEEecCCCC----CHHHHHHHhc
Q psy7060         128 VYLPCIYAYNKIDQI----SIEEVDRIAR  152 (160)
Q Consensus       128 vY~P~iyv~NKiD~i----s~eevd~i~~  152 (160)
                      .-+|.++|.||+|+.    +.+++..+++
T Consensus       115 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~  143 (177)
T 1wms_A          115 ESFPFVILGNKIDISERQVSTEEAQAWCR  143 (177)
T ss_dssp             TTSCEEEEEECTTCSSCSSCHHHHHHHHH
T ss_pred             CCCcEEEEEECCcccccccCHHHHHHHHH
Confidence            456999999999985    4577777765

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=81.64  E-value=0.9  Score=30.80  Aligned_cols=25  Identities=32%  Similarity=0.440  Sum_probs=18.6

Q ss_pred             ceeceEEEEecCCCCC-----HHHHHHHhc
Q psy7060         128 VYLPCIYAYNKIDQIS-----IEEVDRIAR  152 (160)
Q Consensus       128 vY~P~iyv~NKiD~is-----~eevd~i~~  152 (160)
                      .-.|.++|.||+|+.+     .+++..+++
T Consensus       108 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  137 (168)
T 1z2a_A          108 GDIPTALVQNKIDLLDDSCIKNEEAEGLAK  137 (168)
T ss_dssp             CSCCEEEEEECGGGGGGCSSCHHHHHHHHH
T ss_pred             CCCCEEEEEECcccCcccccCHHHHHHHHH
Confidence            3579999999999864     466666654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=81.36  E-value=1.3  Score=30.87  Aligned_cols=27  Identities=33%  Similarity=0.267  Sum_probs=19.4

Q ss_pred             ceeceEEEEecCCCC-----CHHHHHHHhcCC
Q psy7060         128 VYLPCIYAYNKIDQI-----SIEEVDRIARQP  154 (160)
Q Consensus       128 vY~P~iyv~NKiD~i-----s~eevd~i~~~p  154 (160)
                      .-+|.++|.||+|+.     +.++...+++.-
T Consensus       110 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~  141 (181)
T 3t5g_A          110 VQIPIMLVGNKKDLHMERVISYEEGKALAESW  141 (181)
T ss_dssp             --CCEEEEEECTTCTTTCCSCHHHHHHHHHHT
T ss_pred             CCCCEEEEEECccchhcceecHHHHHHHHHHh
Confidence            357999999999984     557777775543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=81.09  E-value=6.7  Score=31.93  Aligned_cols=21  Identities=38%  Similarity=0.526  Sum_probs=17.4

Q ss_pred             eeceEEEEecCCCCCHHHHHH
Q psy7060         129 YLPCIYAYNKIDQISIEEVDR  149 (160)
Q Consensus       129 Y~P~iyv~NKiD~is~eevd~  149 (160)
                      -+|.|+|.||+|+.+.++++.
T Consensus       280 ~~piilV~NK~Dl~~~~~~~~  300 (357)
T 2e87_A          280 DLPFLVVINKIDVADEENIKR  300 (357)
T ss_dssp             TSCEEEEECCTTTCCHHHHHH
T ss_pred             CCCEEEEEECcccCChHHHHH
Confidence            689999999999998766544

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=80.89  E-value=1.5  Score=29.95  Aligned_cols=23  Identities=35%  Similarity=0.319  Sum_probs=16.5

Q ss_pred             eeceEEEEecCCCCC-----HHHHHHHh
Q psy7060         129 YLPCIYAYNKIDQIS-----IEEVDRIA  151 (160)
Q Consensus       129 Y~P~iyv~NKiD~is-----~eevd~i~  151 (160)
                      -+|.++|.||+|+.+     .++...++
T Consensus       111 ~~piilv~NK~Dl~~~~~v~~~~~~~~~  138 (175)
T 2nzj_A          111 HVPIILVGNKADLARCREVSVEEGRACA  138 (175)
T ss_dssp             -CCEEEEEECTTCTTTCCSCHHHHHHHH
T ss_pred             CCCEEEEEEChhhccccccCHHHHHHHH
Confidence            579999999999964     35555544

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=80.86  E-value=1.7  Score=31.64  Aligned_cols=25  Identities=28%  Similarity=0.309  Sum_probs=19.7

Q ss_pred             ceeceEEEEecCCCC---CHHHHHHHhc
Q psy7060         128 VYLPCIYAYNKIDQI---SIEEVDRIAR  152 (160)
Q Consensus       128 vY~P~iyv~NKiD~i---s~eevd~i~~  152 (160)
                      .-+|.++|.||+|+.   +.+++...++
T Consensus       125 ~~~piilv~NK~Dl~~~~~~~~~~~~~~  152 (198)
T 1f6b_A          125 ANVPILILGNKIDRPEAISEERLREMFG  152 (198)
T ss_dssp             TTSCEEEEEECTTSTTCCCHHHHHHHHT
T ss_pred             CCCcEEEEEECCCccccCCHHHHHHHhC
Confidence            458999999999996   5677776654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=80.42  E-value=0.69  Score=32.71  Aligned_cols=20  Identities=15%  Similarity=0.129  Sum_probs=15.5

Q ss_pred             eeceEEEEecCCCCCHHHHH
Q psy7060         129 YLPCIYAYNKIDQISIEEVD  148 (160)
Q Consensus       129 Y~P~iyv~NKiD~is~eevd  148 (160)
                      -+|.++|.||+|+.+...++
T Consensus       156 ~~p~ilv~nK~Dl~~~~~~~  175 (193)
T 2ged_A          156 GIDILIACNKSELFTARPPS  175 (193)
T ss_dssp             CCCEEEEEECTTSTTCCCHH
T ss_pred             CCCEEEEEEchHhcCCCCHH
Confidence            47999999999998653333

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=80.17  E-value=2.1  Score=29.25  Aligned_cols=25  Identities=28%  Similarity=0.213  Sum_probs=18.5

Q ss_pred             eeceEEEEecCCCC-----CHHHHHHHhcC
Q psy7060         129 YLPCIYAYNKIDQI-----SIEEVDRIARQ  153 (160)
Q Consensus       129 Y~P~iyv~NKiD~i-----s~eevd~i~~~  153 (160)
                      -+|.++|.||+|+.     +.++...+++.
T Consensus       120 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  149 (179)
T 1z0f_A          120 NTVIILIGNKADLEAQRDVTYEEAKQFAEE  149 (179)
T ss_dssp             TCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCcEEEEEECcccccccccCHHHHHHHHHH
Confidence            47999999999985     34666666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	160
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	96.79
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	92.98
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	91.24
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	91.2
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	87.37
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	87.25
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	83.12
d2fh5b1	207	Signal recognition particle receptor beta-subunit	82.88
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	80.87
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	80.34

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.79  E-value=3.8e-05  Score=59.74  Aligned_cols=111  Identities=23%  Similarity=0.208  Sum_probs=72.0

Q ss_pred             chHHHHHHHHHHHhcCceeccCCCCeEEEEecCcceEEecccCCchhhHHHHHHHHHHhhhhhhHHhhhcCccccccCCC
Q psy7060           7 QDVQRGLLEKELESVGIRLNKKKPNIYFKQKKAGGIAFNSTCPLTQVNEKLVQLILHEYKIFNAEQKKAGGIAFNSTCPL   86 (160)
Q Consensus         7 ~~~q~~~le~ELe~~GIrLnkk~p~I~ikkk~~GGI~i~~t~~lt~~~~~~v~~~l~~yki~n~~~~~~~~~~~~~~~~~   86 (160)
                      +..+...+..||.-.......++.....++.+.+++........                                ....
T Consensus       127 p~~d~~~i~~eL~~~~~~~~~k~~~~l~K~~~~~~~~~~~~~~~--------------------------------~~~~  174 (319)
T d1wxqa1         127 PVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAE--------------------------------HLSG  174 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTTSSCCCHHHHHHH--------------------------------HTGG
T ss_pred             HHHHHHHHHHHHHHhhHHHhhhhhhhhhhhccccchhHHHHHHH--------------------------------HHHH
Confidence            34577888999887776666665544444444444443221100                                0112


Q ss_pred             cccCHHHHHHHHHHcCccceEEEeecCCChhH-HHHHHhcCcceeceEEEEecCCCCCHHHHHHHhcC
Q psy7060          87 TQVNEKLVQLILHEYKIFNAEVLFREDCNADE-LIDVINANRVYLPCIYAYNKIDQISIEEVDRIARQ  153 (160)
Q Consensus        87 ~~~~e~~V~~IL~EYkI~NA~V~ired~t~Dd-liDvi~~nrvY~P~iyv~NKiD~is~eevd~i~~~  153 (160)
                      ...++..+...+++.++.+...    +.+.++ ....-..++.|+|++|++||.|..+.+.++++.+.
T Consensus       175 ~~~~~~~~~~~l~~~~l~~~~~----~~~~~e~~~~~~~~~~~~kP~~~v~Nk~d~~~~e~~~~~~~~  238 (319)
T d1wxqa1         175 IGVNENDVWEAMHKLNLPEDPT----KWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQIKRLVRE  238 (319)
T ss_dssp             GTCCHHHHHHHHHHTTCCSCGG----GCCHHHHHHHHHHHHHHHSCEEEEEECGGGSCHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHhcCCcchhh----hcCHHHHHHhHHHhhhhcCchhhhcccccchhhHHHHHHHHH
Confidence            2367888999999998877432    234444 44555678999999999999999998888887543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=92.98  E-value=0.047  Score=37.40  Aligned_cols=26  Identities=23%  Similarity=0.291  Sum_probs=18.1

Q ss_pred             HHHHHhcCcceeceEEEEecCCCCCHHH
Q psy7060         119 LIDVINANRVYLPCIYAYNKIDQISIEE  146 (160)
Q Consensus       119 liDvi~~nrvY~P~iyv~NKiD~is~ee  146 (160)
                      +++.+.  +.-+|+|+|+||+|++...+
T Consensus       101 ~~~~l~--~~~~pviiv~NK~Dl~~~~~  126 (171)
T d1mkya1         101 LADFLR--KSTVDTILVANKAENLREFE  126 (171)
T ss_dssp             HHHHHH--HHTCCEEEEEESCCSHHHHH
T ss_pred             cccccc--cccccccccchhhhhhhhhh
Confidence            445554  34469999999999975533

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.24  E-value=0.067  Score=36.88  Aligned_cols=24  Identities=29%  Similarity=0.426  Sum_probs=19.8

Q ss_pred             cceeceEEEEecCCCCCHHHHHHH
Q psy7060         127 RVYLPCIYAYNKIDQISIEEVDRI  150 (160)
Q Consensus       127 rvY~P~iyv~NKiD~is~eevd~i  150 (160)
                      ..-+|+|.|.||+|+.+.++++.+
T Consensus       111 ~~~~p~iiv~NK~D~~~~~~~~~~  134 (180)
T d1udxa2         111 LLRRPSLVALNKVDLLEEEAVKAL  134 (180)
T ss_dssp             HHHSCEEEEEECCTTSCHHHHHHH
T ss_pred             cchhhhhhhhhhhhhhhHHHHHHH
Confidence            345799999999999988777765

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=91.20  E-value=0.36  Score=33.60  Aligned_cols=57  Identities=16%  Similarity=0.306  Sum_probs=34.8

Q ss_pred             cCHHHHHHHHHHcCccceEEEeec-C--CCh--hHHHHHHhcCcceeceEEEEecCCCCCHHHH
Q psy7060          89 VNEKLVQLILHEYKIFNAEVLFRE-D--CNA--DELIDVINANRVYLPCIYAYNKIDQISIEEV  147 (160)
Q Consensus        89 ~~e~~V~~IL~EYkI~NA~V~ire-d--~t~--DdliDvi~~nrvY~P~iyv~NKiD~is~eev  147 (160)
                      ...+.++......+.-.+.+++-. .  +..  .++...+....  +|+++|+||+|+.+.++.
T Consensus        68 g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~--~p~iiv~NKiD~~~~~~~  129 (179)
T d1wb1a4          68 GHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFN--IPIIVVITKSDNAGTEEI  129 (179)
T ss_dssp             SHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTT--CCBCEEEECTTSSCHHHH
T ss_pred             cccccccchhhhhhhccccccccccccccchhhhhhhhhhhhcC--CcceeccccccccCHHHH
Confidence            345667777777766666554432 2  211  23333333333  599999999999987654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.37  E-value=0.22  Score=34.24  Aligned_cols=26  Identities=15%  Similarity=0.187  Sum_probs=19.0

Q ss_pred             HHHHHhcCcceeceEEEEecCCCCCH
Q psy7060         119 LIDVINANRVYLPCIYAYNKIDQISI  144 (160)
Q Consensus       119 liDvi~~nrvY~P~iyv~NKiD~is~  144 (160)
                      +.+.+....--+|.|+|.||+|+.+.
T Consensus       105 i~~~l~~~~~~~piilv~NK~Dl~~~  130 (178)
T d1wf3a1         105 VARALKPLVGKVPILLVGNKLDAAKY  130 (178)
T ss_dssp             HHHHHGGGTTTSCEEEEEECGGGCSS
T ss_pred             hhhheeccccchhhhhhhcccccccC
Confidence            45666544344799999999999853

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=87.25  E-value=0.69  Score=34.88  Aligned_cols=32  Identities=25%  Similarity=0.293  Sum_probs=22.6

Q ss_pred             hhHHHHHHhcCcceeceEEEEecCCCCCHHHHHHH
Q psy7060         116 ADELIDVINANRVYLPCIYAYNKIDQISIEEVDRI  150 (160)
Q Consensus       116 ~DdliDvi~~nrvY~P~iyv~NKiD~is~eevd~i  150 (160)
                      -+..++-+..+   +|.|+|+||+|+.+.+..+..
T Consensus        32 ~~~~l~~~~~~---Kp~IlVlNK~DLv~~~~~~~w   63 (273)
T d1puja_          32 RNPMIEDILKN---KPRIMLLNKADKADAAVTQQW   63 (273)
T ss_dssp             SCHHHHHHCSS---SCEEEEEECGGGSCHHHHHHH
T ss_pred             CCHHHHHHHcC---CCeEEEEECccCCchHHHHHH
Confidence            34444444444   599999999999988766554

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=83.12  E-value=0.28  Score=34.04  Aligned_cols=30  Identities=20%  Similarity=0.329  Sum_probs=20.4

Q ss_pred             HHHHHHhcCcceeceEEEEecCCCCCHHHHHH
Q psy7060         118 ELIDVINANRVYLPCIYAYNKIDQISIEEVDR  149 (160)
Q Consensus       118 dliDvi~~nrvY~P~iyv~NKiD~is~eevd~  149 (160)
                      ++++.+...  -+|-++|+||+|+.+.++++.
T Consensus       125 ~~~~~l~~~--~~piivv~NK~D~~~~~~~~~  154 (195)
T d1svia_         125 QMYEFLKYY--GIPVIVIATKADKIPKGKWDK  154 (195)
T ss_dssp             HHHHHHHHT--TCCEEEEEECGGGSCGGGHHH
T ss_pred             ccccccccc--cCcceechhhccccCHHHHHH
Confidence            345555433  369999999999987655433

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.88  E-value=0.43  Score=33.30  Aligned_cols=15  Identities=27%  Similarity=0.100  Sum_probs=12.9

Q ss_pred             eeceEEEEecCCCCC
Q psy7060         129 YLPCIYAYNKIDQIS  143 (160)
Q Consensus       129 Y~P~iyv~NKiD~is  143 (160)
                      -.|+++|.||+|+.+
T Consensus       108 ~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1         108 SPSLLIACNKQDIAM  122 (207)
T ss_dssp             CCEEEEEEECTTSTT
T ss_pred             CCcEEEEEECcccCC
Confidence            369999999999974

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=80.87  E-value=0.29  Score=33.08  Aligned_cols=16  Identities=44%  Similarity=0.596  Sum_probs=13.8

Q ss_pred             eeceEEEEecCCCCCH
Q psy7060         129 YLPCIYAYNKIDQISI  144 (160)
Q Consensus       129 Y~P~iyv~NKiD~is~  144 (160)
                      -+|.|+|+||+|+++.
T Consensus       121 ~~p~iiv~NK~D~~~~  136 (184)
T d2cxxa1         121 DIPTIVAVNKLDKIKN  136 (184)
T ss_dssp             TCCEEEEEECGGGCSC
T ss_pred             CCCEEEEEeeeehhhh
Confidence            5799999999998843

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=80.34  E-value=0.44  Score=33.24  Aligned_cols=25  Identities=40%  Similarity=0.367  Sum_probs=20.7

Q ss_pred             CcceeceEEEEecCCCCCHHHHHHH
Q psy7060         126 NRVYLPCIYAYNKIDQISIEEVDRI  150 (160)
Q Consensus       126 nrvY~P~iyv~NKiD~is~eevd~i  150 (160)
                      ++.-+|.+.|+||+|+.+.++.+.+
T Consensus       154 ~~~~~~~ivvinK~D~~~~~~~~~~  178 (244)
T d1yrba1         154 LRLGATTIPALNKVDLLSEEEKERH  178 (244)
T ss_dssp             HHHTSCEEEEECCGGGCCHHHHHHH
T ss_pred             HHhCCCceeeeeccccccHHHHHHH
Confidence            4667899999999999998776554