Psyllid ID: psy7061

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-----
Protein Sequence
MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT
Secondary Structure (PSIPRED)
cccccccccEEEEcccccEEEEccccccEEEEEcccccEEEEccccccccEEEEEEcccccEEEc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEcccccEEEEEccccEEEEEEcccccHHEEHccccccEEEEEEEcccccEEEc
Coil and Loop (DISEMBL)
maahrayglhcvfspdcrllattSADQTARIWNTEDFSLVRELGTANQRWVWDAAftldskfllt
Flexible Loop (DISEMBL)
maahrayglhcvfspdCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAaftldskfllt
Low Complexity Region (SEG)
MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT
Disordered region (IsUnstruct)
*****AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL**
Disordered Region (DISOPRED)
MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT
Disordered Region (DISEMBL)
MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT
Disordered Region (DISPRO)
***HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	65	2.2.26 [Sep-21-2011]
Q803V5	326	Target of rapamycin compl	yes	N/A	1.0	0.199	0.486	2e-13
Q54D08	304	Protein LST8 homolog OS=D	yes	N/A	0.984	0.210	0.538	5e-13
Q9W328	313	Protein LST8 homolog OS=D	yes	N/A	0.984	0.204	0.6	6e-13
Q29HG9	315	Protein LST8 homolog OS=D	yes	N/A	0.984	0.203	0.6	1e-12
Q9BVC4	326	Target of rapamycin compl	yes	N/A	1.0	0.199	0.472	3e-12
Q17QU5	326	Target of rapamycin compl	yes	N/A	1.0	0.199	0.472	3e-12
Q9DCJ1	326	Target of rapamycin compl	no	N/A	1.0	0.199	0.472	3e-12
Q5I0B4	326	Target of rapamycin compl	yes	N/A	1.0	0.199	0.472	4e-12
Q6PA72	326	Target of rapamycin compl	N/A	N/A	1.0	0.199	0.472	4e-12
Q9Z2K5	326	Target of rapamycin compl	yes	N/A	1.0	0.199	0.472	4e-12

>sp|Q803V5|LST8_DANRE Target of rapamycin complex subunit lst8 OS=Danio rerio GN=mlst8 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 7/72 (9%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWD 53
           + AH+ Y L C FSPD  LLAT SADQT +IW T +FSL+ EL       G  ++ W+WD
Sbjct: 216 IPAHKRYSLRCKFSPDSTLLATCSADQTCKIWRTSNFSLMTELSIKSNNPGETSRGWMWD 275

Query: 54  AAFTLDSKFLLT 65
            AF+ DS++++T
Sbjct: 276 CAFSGDSQYIVT 287

Danio rerio (taxid: 7955)

>sp|Q54D08|LST8_DICDI Protein LST8 homolog OS=Dictyostelium discoideum GN=lst8 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/65 (53%), Positives = 47/65 (72%), Gaps = 1/65 (1%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
           + AH A  L  +FSPD +LLAT SAD T +IWNT+ F++V+ L   +QRWVWD AF+ DS
Sbjct: 203 IEAHNAPILKTLFSPDTKLLATCSADHTVKIWNTKKFNVVQTL-NGHQRWVWDCAFSNDS 261

Query: 61  KFLLT 65
            +L+T
Sbjct: 262 AYLVT 266

Plays a role in regulation of adenylate cyclase and protein kinase B (PKB) activation during aggregation. Involved in both chemotaxis and signal relay.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9W328|LST8_DROME Protein LST8 homolog OS=Drosophila melanogaster GN=CG3004 PE=2 SV=2

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
           + AH  Y L C FSPD RLL TTS D T  IW T+DFS  REL   N  WVWDAAF+ DS
Sbjct: 210 IPAHSRYILRCKFSPDSRLLLTTSGDGTVCIWKTDDFSKWRELCIENY-WVWDAAFSADS 268

Query: 61  KFLLT 65
           K+L T
Sbjct: 269 KWLFT 273

Drosophila melanogaster (taxid: 7227)

>sp|Q29HG9|LST8_DROPS Protein LST8 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA15597 PE=3 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
           + AH  Y L C FSPD RLL TTS D TA +W T DFS  REL   N  WVWDAAF+ DS
Sbjct: 209 IQAHTRYILRCKFSPDSRLLLTTSGDGTACLWKTSDFSKWRELCIENY-WVWDAAFSADS 267

Query: 61  KFLLT 65
           K+L T
Sbjct: 268 KWLFT 272

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q9BVC4|LST8_HUMAN Target of rapamycin complex subunit LST8 OS=Homo sapiens GN=MLST8 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 7/72 (9%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWD 53
           + AH  Y L C FSPD  LLAT SADQT +IW T +FSL+ EL       G +++ W+W 
Sbjct: 216 IPAHTRYALQCRFSPDSTLLATCSADQTCKIWRTSNFSLMTELSIKSGNPGESSRGWMWG 275

Query: 54  AAFTLDSKFLLT 65
            AF+ DS++++T
Sbjct: 276 CAFSGDSQYIVT 287

Subunit of both mTORC1 and mTORC2, which regulates cell growth and survival in response to nutrient and hormonal signals. mTORC1 is activated in response to growth factors or amino acids. Growth factor-stimulated mTORC1 activation involves a AKT1-mediated phosphorylation of TSC1-TSC2, which leads to the activation of the RHEB GTPase that potently activates the protein kinase activity of mTORC1. Amino acid-signaling to mTORC1 requires its relocalization to the lysosomes mediated by the Ragulator complex and the Rag GTPases. Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. mTORC1 phosphorylates EIF4EBP1 and releases it from inhibiting the elongation initiation factor 4E (eiF4E). mTORC1 phosphorylates and activates S6K1 at 'Thr-389', which then promotes protein synthesis by phosphorylating PDCD4 and targeting it for degradation. Within mTORC1, LST8 interacts directly with MTOR and enhances its kinase activity. In nutrient-poor conditions, stabilizes the MTOR-RPTOR interaction and favors RPTOR-mediated inhibition of MTOR activity. mTORC2 is also activated by growth factors, but seems to be nutrient-insensitive. mTORC2 seems to function upstream of Rho GTPases to regulate the actin cytoskeleton, probably by activating one or more Rho-type guanine nucleotide exchange factors. mTORC2 promotes the serum-induced formation of stress-fibers or F-actin. mTORC2 plays a critical role in AKT1 'Ser-473' phosphorylation, which may facilitate the phosphorylation of the activation loop of AKT1 on 'Thr-308' by PDK1 which is a prerequisite for full activation. mTORC2 regulates the phosphorylation of SGK1 at 'Ser-422'. mTORC2 also modulates the phosphorylation of PRKCA on 'Ser-657'.

Homo sapiens (taxid: 9606)

>sp|Q17QU5|LST8_BOVIN Target of rapamycin complex subunit LST8 OS=Bos taurus GN=MLST8 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 7/72 (9%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWD 53
           + AH  Y L C FSPD  LLAT SADQT +IW T +FSL+ EL       G +++ W+W 
Sbjct: 216 IPAHTRYALQCRFSPDSTLLATCSADQTCKIWRTSNFSLMTELSIKSSNPGESSRGWMWG 275

Query: 54  AAFTLDSKFLLT 65
            AF+ DS++++T
Sbjct: 276 CAFSGDSQYIVT 287

Subunit of both mTORC1 and mTORC2, which regulates cell growth and survival in response to nutrient and hormonal signals. mTORC1 is activated in response to growth factors or amino acids. Growth factor-stimulated mTORC1 activation involves a AKT1-mediated phosphorylation of TSC1-TSC2, which leads to the activation of the RHEB GTPase that potently activates the protein kinase activity of mTORC1. Amino acid-signaling to mTORC1 requires its relocalization to the lysosomes mediated by the Ragulator complex and the Rag GTPases. Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. mTORC1 phosphorylates EIF4EBP1 and releases it from inhibiting the elongation initiation factor 4E (eiF4E). mTORC1 phosphorylates and activates S6K1 at 'Thr-389', which then promotes protein synthesis by phosphorylating PDCD4 and targeting it for degradation. Within mTORC1, LST8 interacts directly with MTOR and enhances its kinase activity. In nutrient-poor conditions, stabilizes the MTOR-RPTOR interaction and favors RPTOR-mediated inhibition of MTOR activity. mTORC2 is also activated by growth factors, but seems to be nutrient-insensitive. mTORC2 seems to function upstream of Rho GTPases to regulate the actin cytoskeleton, probably by activating one or more Rho-type guanine nucleotide exchange factors. mTORC2 promotes the serum-induced formation of stress-fibers or F-actin. mTORC2 plays a critical role in AKT1 'Ser-473' phosphorylation, which may facilitate the phosphorylation of the activation loop of AKT1 on 'Thr-308' by PDK1 which is a prerequisite for full activation. mTORC2 regulates the phosphorylation of SGK1 at 'Ser-422'. mTORC2 also modulates the phosphorylation of PRKCA on 'Ser-657'.

Bos taurus (taxid: 9913)

>sp|Q9DCJ1|LST8_MOUSE Target of rapamycin complex subunit LST8 OS=Mus musculus GN=Mlst8 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 7/72 (9%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWD 53
           + AH  Y L C FSPD  LLAT SADQT +IW T +FSL+ EL       G +++ W+W 
Sbjct: 216 IPAHTRYALQCRFSPDSTLLATCSADQTCKIWRTSNFSLMTELSIKSSNPGESSRGWMWG 275

Query: 54  AAFTLDSKFLLT 65
            AF+ DS++++T
Sbjct: 276 CAFSGDSQYIVT 287

Subunit of both mTORC1 and mTORC2, which regulates cell growth and survival in response to nutrient and hormonal signals. mTORC1 is activated in response to growth factors or amino acids. Growth factor-stimulated mTORC1 activation involves a AKT1-mediated phosphorylation of TSC1-TSC2, which leads to the activation of the RHEB GTPase that potently activates the protein kinase activity of mTORC1. Amino acid-signaling to mTORC1 requires its relocalization to the lysosomes mediated by the Ragulator complex and the Rag GTPases. Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. mTORC1 phosphorylates EIF4EBP1 and releases it from inhibiting the elongation initiation factor 4E (eiF4E). mTORC1 phosphorylates and activates S6K1 at 'Thr-389', which then promotes protein synthesis by phosphorylating PDCD4 and targeting it for degradation. Within mTORC1, LST8 interacts directly with MTOR and enhances its kinase activity. In nutrient-poor conditions, stabilizes the MTOR-RPTOR interaction and favors RPTOR-mediated inhibition of MTOR activity. mTORC2 is also activated by growth factors, but seems to be nutrient-insensitive. mTORC2 seems to function upstream of Rho GTPases to regulate the actin cytoskeleton, probably by activating one or more Rho-type guanine nucleotide exchange factors. mTORC2 promotes the serum-induced formation of stress-fibers or F-actin. mTORC2 plays a critical role in AKT1 'Ser-473' phosphorylation, which may facilitate the phosphorylation of the activation loop of AKT1 on 'Thr-308' by PDK1 which is a prerequisite for full activation. mTORC2 regulates the phosphorylation of SGK1 at 'Ser-422'. mTORC2 also modulates the phosphorylation of PRKCA on 'Ser-657'.

Mus musculus (taxid: 10090)

>sp|Q5I0B4|LST8_XENTR Target of rapamycin complex subunit lst8 OS=Xenopus tropicalis GN=mlst8 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 7/72 (9%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWD 53
           + AH+   L C FSPD  LLAT SADQT +IW T +FSL+ EL       G  ++ W+WD
Sbjct: 216 IPAHKRCALKCKFSPDSTLLATCSADQTCKIWRTSNFSLMTELSIKSNNPGETSRGWMWD 275

Query: 54  AAFTLDSKFLLT 65
            AF+ DS++++T
Sbjct: 276 CAFSGDSQYIVT 287

Xenopus tropicalis (taxid: 8364)

>sp|Q6PA72|LST8_XENLA Target of rapamycin complex subunit lst8 OS=Xenopus laevis GN=mlst8 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 7/72 (9%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWD 53
           + AH+   L C FSPD  LLAT SADQT +IW T +FSL+ EL       G  ++ W+WD
Sbjct: 216 IPAHKRCALKCKFSPDSTLLATCSADQTCKIWRTSNFSLMTELSIKSNNPGETSRGWMWD 275

Query: 54  AAFTLDSKFLLT 65
            AF+ DS++++T
Sbjct: 276 CAFSGDSQYIVT 287

Xenopus laevis (taxid: 8355)

>sp|Q9Z2K5|LST8_RAT Target of rapamycin complex subunit LST8 OS=Rattus norvegicus GN=Mlst8 PE=1 SV=2

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 7/72 (9%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWD 53
           + AH  Y L C FSPD  LLAT SADQT +IW T +FSL+ EL       G +++ W+W 
Sbjct: 216 IPAHTRYALQCRFSPDSTLLATCSADQTCKIWRTSNFSLMTELSIKSSNPGESSRGWMWG 275

Query: 54  AAFTLDSKFLLT 65
            AF+ DS++++T
Sbjct: 276 CAFSGDSQYIVT 287

Subunit of both mTORC1 and mTORC2, which regulates cell growth and survival in response to nutrient and hormonal signals. mTORC1 is activated in response to growth factors or amino acids. Growth factor-stimulated mTORC1 activation involves a AKT1-mediated phosphorylation of TSC1-TSC2, which leads to the activation of the RHEB GTPase that potently activates the protein kinase activity of mTORC1. Amino acid-signaling to mTORC1 requires its relocalization to the lysosomes mediated by the Ragulator complex and the Rag GTPases. Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. mTORC1 phosphorylates EIF4EBP1 and releases it from inhibiting the elongation initiation factor 4E (eiF4E). mTORC1 phosphorylates and activates S6K1 at 'Thr-389', which then promotes protein synthesis by phosphorylating PDCD4 and targeting it for degradation. Within mTORC1, LST8 interacts directly with MTOR and enhances its kinase activity. In nutrient-poor conditions, stabilizes the MTOR-RPTOR interaction and favors RPTOR-mediated inhibition of MTOR activity. mTORC2 is also activated by growth factors, but seems to be nutrient-insensitive. mTORC2 seems to function upstream of Rho GTPases to regulate the actin cytoskeleton, probably by activating one or more Rho-type guanine nucleotide exchange factors. mTORC2 promotes the serum-induced formation of stress-fibers or F-actin. mTORC2 plays a critical role in AKT1 'Ser-473' phosphorylation, which may facilitate the phosphorylation of the activation loop of AKT1 on 'Thr-308' by PDK1 which is a prerequisite for full activation. mTORC2 regulates the phosphorylation of SGK1 at 'Ser-421'. mTORC2 also modulates the phosphorylation of PRKCA on 'Ser-657'.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
225712316	365	LTS8 homolog [Lepeophtheirus salmonis]	1.0	0.178	0.615	1e-18
91089925	315	PREDICTED: similar to G protein beta sub	0.969	0.2	0.650	5e-17
270013561	309	hypothetical protein TcasGA2_TC012179 [T	0.969	0.203	0.650	5e-17
242006179	320	WD-repeat protein YNL006W, putative [Ped	1.0	0.203	0.615	2e-16
321478720	321	hypothetical protein DAPPUDRAFT_205806 [	1.0	0.202	0.615	2e-16
244790043	311	MTOR associated protein, LST8 homolog [A	1.0	0.209	0.646	6e-16
291233680	325	PREDICTED: LTS8 homolog [Saccoglossus ko	1.0	0.2	0.6	4e-15
405970246	317	Target of rapamycin complex subunit lst8	0.969	0.198	0.587	5e-15
72016103	315	PREDICTED: target of rapamycin complex s	1.0	0.206	0.553	6e-15
380025568	320	PREDICTED: target of rapamycin complex s	1.0	0.203	0.584	1e-14

>gi|225712316|gb|ACO12004.1| LTS8 homolog [Lepeophtheirus salmonis]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 53/65 (81%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
           + AH+ Y L C FSPD ++LATTSADQT+++WNT+D+SL +EL   NQRWVWD AF+LDS
Sbjct: 261 IQAHKKYALRCKFSPDGKILATTSADQTSKLWNTDDYSLKKELKVDNQRWVWDLAFSLDS 320

Query: 61  KFLLT 65
           ++L T
Sbjct: 321 QYLFT 325

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089925|ref|XP_972979.1| PREDICTED: similar to G protein beta subunit-like [Tribolium castaneum]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/63 (65%), Positives = 49/63 (77%)

Query: 3   AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF 62
           AH+ + L C FSPD R L TTSADQTA+IWNT DFSL +EL   NQRWVWDAAF+ DS++
Sbjct: 215 AHKRHALKCEFSPDSRYLVTTSADQTAKIWNTSDFSLRQELKQENQRWVWDAAFSSDSQY 274

Query: 63  LLT 65
           + T
Sbjct: 275 VFT 277

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013561|gb|EFA10009.1| hypothetical protein TcasGA2_TC012179 [Tribolium castaneum]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/63 (65%), Positives = 49/63 (77%)

Query: 3   AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF 62
           AH+ + L C FSPD R L TTSADQTA+IWNT DFSL +EL   NQRWVWDAAF+ DS++
Sbjct: 209 AHKRHALKCEFSPDSRYLVTTSADQTAKIWNTSDFSLRQELKQENQRWVWDAAFSSDSQY 268

Query: 63  LLT 65
           + T
Sbjct: 269 VFT 271

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006179|ref|XP_002423931.1| WD-repeat protein YNL006W, putative [Pediculus humanus corporis] gi|212507201|gb|EEB11193.1| WD-repeat protein YNL006W, putative [Pediculus humanus corporis]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 48/65 (73%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
           + AH  Y L CVFSPD  LL TTSADQTAR+W T DFSL +EL    QRWVW AA ++DS
Sbjct: 217 IVAHNKYALSCVFSPDSTLLVTTSADQTARVWKTADFSLYQELKLEGQRWVWKAALSVDS 276

Query: 61  KFLLT 65
           +++LT
Sbjct: 277 QYILT 281

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321478720|gb|EFX89677.1| hypothetical protein DAPPUDRAFT_205806 [Daphnia pulex]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/65 (61%), Positives = 49/65 (75%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
           + AH+ YGL C FSPD + LATTSADQTA++W T DFSL   L T NQRWVWD AF+ DS
Sbjct: 219 LLAHKRYGLKCKFSPDAKYLATTSADQTAKLWKTSDFSLHSTLQTENQRWVWDIAFSADS 278

Query: 61  KFLLT 65
           ++ +T
Sbjct: 279 QYAIT 283

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|244790043|ref|NP_001156436.1| MTOR associated protein, LST8 homolog [Acyrthosiphon pisum] gi|239792846|dbj|BAH72716.1| ACYPI003573 [Acyrthosiphon pisum]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 47/65 (72%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
           + AHR Y LHC FSPD  LL TTSADQ+A IW T DFSL +EL    QRWVWD AF+ DS
Sbjct: 209 INAHRKYALHCKFSPDSTLLVTTSADQSALIWKTSDFSLKQELKDQRQRWVWDTAFSNDS 268

Query: 61  KFLLT 65
           + LLT
Sbjct: 269 EHLLT 273

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291233680|ref|XP_002736782.1| PREDICTED: LTS8 homolog [Saccoglossus kowalevskii]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/65 (60%), Positives = 46/65 (70%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
           + AH  YGL C FSPD  LLATTSADQT +IW T DFSL   L    QRWVWD +F+ DS
Sbjct: 220 IPAHEKYGLKCKFSPDSTLLATTSADQTVKIWRTADFSLKTTLSDKTQRWVWDCSFSGDS 279

Query: 61  KFLLT 65
           ++L+T
Sbjct: 280 QYLVT 284

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|405970246|gb|EKC35172.1| Target of rapamycin complex subunit lst8 [Crassostrea gigas]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/63 (58%), Positives = 47/63 (74%)

Query: 3   AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF 62
           AH  YG+ C+FSPD  LLATTSADQT +IW T D +L+ EL    QRWVWD AF+ DS++
Sbjct: 216 AHSKYGIKCLFSPDSTLLATTSADQTCKIWRTADHTLMTELKENTQRWVWDCAFSGDSQY 275

Query: 63  LLT 65
           ++T
Sbjct: 276 IIT 278

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|72016103|ref|XP_786340.1| PREDICTED: target of rapamycin complex subunit lst8-like [Strongylocentrotus purpuratus]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/65 (55%), Positives = 48/65 (73%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
           + AH+ YGL C FSPDC LLATTS D++ RIW T DF L++ L    Q+WVWD AF+ DS
Sbjct: 212 IPAHKKYGLKCKFSPDCTLLATTSGDKSVRIWRTADFPLMQTLSVDMQQWVWDCAFSSDS 271

Query: 61  KFLLT 65
           ++++T
Sbjct: 272 QYVVT 276

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|380025568|ref|XP_003696542.1| PREDICTED: target of rapamycin complex subunit lst8-like [Apis florea]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 48/65 (73%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
           ++AH+ Y L C FSPD  LL TTSADQTAR+W T DFS V+ L    +RWVWDAAF+ DS
Sbjct: 215 LSAHKRYALRCKFSPDSTLLVTTSADQTARVWKTTDFSEVQVLQHEAKRWVWDAAFSADS 274

Query: 61  KFLLT 65
           +++ T
Sbjct: 275 QYIFT 279

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
FB|FBgn0264691	313	Lst8 [Drosophila melanogaster	0.953	0.198	0.619	2e-14
UNIPROTKB|Q29HG9	315	GA15597 "Protein LST8 homolog"	0.953	0.196	0.619	2.1e-14
DICTYBASE|DDB_G0292592	304	lst8 "WD40 repeat-containing p	0.953	0.203	0.555	1.5e-13
ZFIN|ZDB-GENE-030131-6176	326	mlst8 "MTOR associated protein	0.969	0.193	0.5	1.5e-13
UNIPROTKB|F1NAZ4	327	MLST8 "Uncharacterized protein	0.969	0.192	0.5	2.6e-13
POMBASE|SPBC21B10.05c	314	pop3 "WD repeat protein Pop3"	0.953	0.197	0.553	6.3e-13
UNIPROTKB|Q17QU5	326	MLST8 "Target of rapamycin com	0.969	0.193	0.485	2e-12
UNIPROTKB|Q9BVC4	326	MLST8 "Target of rapamycin com	0.969	0.193	0.485	2e-12
UNIPROTKB|Q5I0B4	326	mlst8 "Target of rapamycin com	0.969	0.193	0.485	2e-12
UNIPROTKB|Q6PA72	326	mlst8 "Target of rapamycin com	0.969	0.193	0.485	2e-12

FB|FBgn0264691 Lst8 [Drosophila melanogaster (taxid:7227)]

 Score = 187 (70.9 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 39/63 (61%), Positives = 42/63 (66%)

Query:     3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF 62
             AH  Y L C FSPD RLL TTS D T  IW T+DFS  REL   N  WVWDAAF+ DSK+
Sbjct:   212 AHSRYILRCKFSPDSRLLLTTSGDGTVCIWKTDDFSKWRELCIENY-WVWDAAFSADSKW 270

Query:    63 LLT 65
             L T
Sbjct:   271 LFT 273

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0031929 "TOR signaling cascade" evidence=IPI

GO:0045793 "positive regulation of cell size" evidence=IMP

UNIPROTKB|Q29HG9 GA15597 "Protein LST8 homolog" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 187 (70.9 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 39/63 (61%), Positives = 42/63 (66%)

Query:     3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF 62
             AH  Y L C FSPD RLL TTS D TA +W T DFS  REL   N  WVWDAAF+ DSK+
Sbjct:   211 AHTRYILRCKFSPDSRLLLTTSGDGTACLWKTSDFSKWRELCIENY-WVWDAAFSADSKW 269

Query:    63 LLT 65
             L T
Sbjct:   270 LFT 272

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISS

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0292592 lst8 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 179 (68.1 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 35/63 (55%), Positives = 46/63 (73%)

Query:     3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF 62
             AH A  L  +FSPD +LLAT SAD T +IWNT+ F++V+ L   +QRWVWD AF+ DS +
Sbjct:   205 AHNAPILKTLFSPDTKLLATCSADHTVKIWNTKKFNVVQTLN-GHQRWVWDCAFSNDSAY 263

Query:    63 LLT 65
             L+T
Sbjct:   264 LVT 266

GO:0043520 "regulation of myosin II filament assembly" evidence=IMP

GO:0043327 "chemotaxis to cAMP" evidence=IMP

GO:0032148 "activation of protein kinase B activity" evidence=IMP

GO:0031932 "TORC2 complex" evidence=IDA

GO:0031152 "aggregation involved in sorocarp development" evidence=IMP

GO:0030838 "positive regulation of actin filament polymerization" evidence=IMP

GO:0007190 "activation of adenylate cyclase activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0006935 "chemotaxis" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-030131-6176 mlst8 "MTOR associated protein, LST8 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 180 (68.4 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 35/70 (50%), Positives = 47/70 (67%)

Query:     3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWDAA 55
             AH+ Y L C FSPD  LLAT SADQT +IW T +FSL+ EL       G  ++ W+WD A
Sbjct:   218 AHKRYSLRCKFSPDSTLLATCSADQTCKIWRTSNFSLMTELSIKSNNPGETSRGWMWDCA 277

Query:    56 FTLDSKFLLT 65
             F+ DS++++T
Sbjct:   278 FSGDSQYIVT 287

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA;ISS

UNIPROTKB|F1NAZ4 MLST8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 2.6e-13, P = 2.6e-13
 Identities = 35/70 (50%), Positives = 46/70 (65%)

Query:     3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWDAA 55
             AH  Y L C FSPD  LLAT SADQT +IW T +FSL+ EL       G  ++ W+WD A
Sbjct:   219 AHNRYALQCKFSPDSTLLATCSADQTCKIWRTSNFSLMTELSIKSNNPGETSRGWMWDCA 278

Query:    56 FTLDSKFLLT 65
             F+ DS++++T
Sbjct:   279 FSGDSQYIVT 288

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0032008 "positive regulation of TOR signaling cascade" evidence=IEA

GO:0032314 "regulation of Rac GTPase activity" evidence=IEA

GO:0050731 "positive regulation of peptidyl-tyrosine phosphorylation" evidence=IEA

POMBASE|SPBC21B10.05c pop3 "WD repeat protein Pop3" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 174 (66.3 bits), Expect = 6.3e-13, P = 6.3e-13
 Identities = 36/65 (55%), Positives = 43/65 (66%)

Query:     3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTED--FSLVRELGTANQRWVWDAAFTLDS 60
             AH+ Y   CV SPD + LAT SAD T  IW+TED  F L R L   +QRWVWD AF+ DS
Sbjct:   213 AHQRYITRCVLSPDVKHLATCSADATVNIWSTEDMSFMLERRL-QGHQRWVWDCAFSADS 271

Query:    61 KFLLT 65
              +L+T
Sbjct:   272 TYLVT 276

GO:0000070 "mitotic sister chromatid segregation" evidence=IMP

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006397 "mRNA processing" evidence=IMP

GO:0031929 "TOR signaling cascade" evidence=TAS

GO:0031931 "TORC1 complex" evidence=IDA

GO:0031932 "TORC2 complex" evidence=IDA

UNIPROTKB|Q17QU5 MLST8 "Target of rapamycin complex subunit LST8" [Bos taurus (taxid:9913)]

 Score = 170 (64.9 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 34/70 (48%), Positives = 46/70 (65%)

Query:     3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWDAA 55
             AH  Y L C FSPD  LLAT SADQT +IW T +FSL+ EL       G +++ W+W  A
Sbjct:   218 AHTRYALQCRFSPDSTLLATCSADQTCKIWRTSNFSLMTELSIKSSNPGESSRGWMWGCA 277

Query:    56 FTLDSKFLLT 65
             F+ DS++++T
Sbjct:   278 FSGDSQYIVT 287

GO:0005737 "cytoplasm" evidence=ISS

GO:0050731 "positive regulation of peptidyl-tyrosine phosphorylation" evidence=IEA

GO:0032314 "regulation of Rac GTPase activity" evidence=IEA

GO:0032008 "positive regulation of TOR signaling cascade" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

UNIPROTKB|Q9BVC4 MLST8 "Target of rapamycin complex subunit LST8" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 34/70 (48%), Positives = 46/70 (65%)

Query:     3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWDAA 55
             AH  Y L C FSPD  LLAT SADQT +IW T +FSL+ EL       G +++ W+W  A
Sbjct:   218 AHTRYALQCRFSPDSTLLATCSADQTCKIWRTSNFSLMTELSIKSGNPGESSRGWMWGCA 277

Query:    56 FTLDSKFLLT 65
             F+ DS++++T
Sbjct:   278 FSGDSQYIVT 287

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0032314 "regulation of Rac GTPase activity" evidence=IEA

GO:0050731 "positive regulation of peptidyl-tyrosine phosphorylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISS

GO:0032008 "positive regulation of TOR signaling cascade" evidence=IMP

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IMP

GO:0005829 "cytosol" evidence=TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0031295 "T cell costimulation" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q5I0B4 mlst8 "Target of rapamycin complex subunit lst8" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 170 (64.9 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 34/70 (48%), Positives = 46/70 (65%)

Query:     3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWDAA 55
             AH+   L C FSPD  LLAT SADQT +IW T +FSL+ EL       G  ++ W+WD A
Sbjct:   218 AHKRCALKCKFSPDSTLLATCSADQTCKIWRTSNFSLMTELSIKSNNPGETSRGWMWDCA 277

Query:    56 FTLDSKFLLT 65
             F+ DS++++T
Sbjct:   278 FSGDSQYIVT 287

GO:0005737 "cytoplasm" evidence=ISS

UNIPROTKB|Q6PA72 mlst8 "Target of rapamycin complex subunit lst8" [Xenopus laevis (taxid:8355)]

 Score = 170 (64.9 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 34/70 (48%), Positives = 46/70 (65%)

Query:     3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWDAA 55
             AH+   L C FSPD  LLAT SADQT +IW T +FSL+ EL       G  ++ W+WD A
Sbjct:   218 AHKRCALKCKFSPDSTLLATCSADQTCKIWRTSNFSLMTELSIKSNNPGETSRGWMWDCA 277

Query:    56 FTLDSKFLLT 65
             F+ DS++++T
Sbjct:   278 FSGDSQYIVT 287

GO:0005737 "cytoplasm" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q29HG9	LST8_DROPS	No assigned EC number	0.6	0.9846	0.2031	yes	N/A
Q9W328	LST8_DROME	No assigned EC number	0.6	0.9846	0.2044	yes	N/A
Q54D08	LST8_DICDI	No assigned EC number	0.5384	0.9846	0.2105	yes	N/A
O74184	WAT1_SCHPO	No assigned EC number	0.5312	0.9692	0.2006	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	65
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-05
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.001
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.002
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.7 bits (127), Expect = 4e-10
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
           +  H +Y     FSPD R+L+++S D+T ++W+ E    +  L   +  WV   AF+ D 
Sbjct: 89  LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPDG 147

Query: 61  KFLLT 65
            F+ +
Sbjct: 148 TFVAS 152

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 47.7 bits (114), Expect = 3e-08
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 4  HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL 63
          H        FSPD +LLAT S D T ++W+ E   L+R L   +   V D A + D  +L
Sbjct: 8  HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASADGTYL 66

Query: 64 LT 65
           +
Sbjct: 67 AS 68

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.9 bits (112), Expect = 4e-08
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
           +  H  +     FSPD   +A++S D T ++W+      V  L T +   V   AF+ D 
Sbjct: 131 LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL-TGHTGEVNSVAFSPDG 189

Query: 61  KFLLT 65
           + LL+
Sbjct: 190 EKLLS 194

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 44.6 bits (106), Expect = 3e-07
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
           +  H        FSPD  LLA+ S D T R+W+      V+ L + +   V   A++ D 
Sbjct: 215 LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL-SGHTNSVTSLAWSPDG 273

Query: 61  KFLLT 65
           K L +
Sbjct: 274 KRLAS 278

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 44.6 bits (106), Expect = 3e-07
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 3   AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF 62
            H        FSPD   L ++S+D T ++W+      +  L   ++  V   AF+ D   
Sbjct: 175 GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL-RGHENGVNSVAFSPDGYL 233

Query: 63  LL 64
           L 
Sbjct: 234 LA 235

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 41.2 bits (95), Expect = 5e-06
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 4   HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL 63
           H    +   FSPD  LLA+ S+D T R+W+    S +    + +   V   AF+ D K L
Sbjct: 241 HSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299

Query: 64  LT 65
            +
Sbjct: 300 AS 301

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 40.8 bits (96), Expect = 7e-06
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 4   HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL 63
           H         S D   LA+ S+D+T R+W+ E    VR L      +V   AF+ D + L
Sbjct: 50  HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS-YVSSVAFSPDGRIL 108

Query: 64  LT 65
            +
Sbjct: 109 SS 110

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.8 bits (83), Expect = 6e-05
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 3  AHRAYGLHCVFSPDCRLLATTSADQTARIWN 33
           H        FSPD  LLA+ S D T R+W+
Sbjct: 9  GHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 34.6 bits (80), Expect = 1e-04
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 3  AHRAYGLHCVFSPDCRLLATTSADQTARIWN 33
           H        FSPD + LA+ S D T ++W+
Sbjct: 10 GHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 36.2 bits (82), Expect = 4e-04
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 11  CVFSPDCRLLATTSADQTARIWNTEDFSLVRELG-TANQRWVWDAAFTLDSKFLLT 65
             FSPD +LLA+ S+D T R+W+ E   L+  L    ++  V   +F+ D   L++
Sbjct: 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS 345

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 34.7 bits (78), Expect = 0.001
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 1   MAAHRAYGLHCVFSPDCR-LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD 59
           +A H        FSPD   L+A+ S+D T R+W+     L+R   + +   V  ++F+ D
Sbjct: 194 LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV-SSFSPD 252

Query: 60  SKFLLT 65
              L +
Sbjct: 253 GSLLAS 258

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 34.3 bits (77), Expect = 0.002
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 3   AHRAYGLHCVFSPDCRLLATTS-ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK 61
            H        FSPD +LLA+ S  D T ++W+      +  L       V   AF+ D  
Sbjct: 153 GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT-DPVSSLAFSPDGG 211

Query: 62  FLLT 65
            L+ 
Sbjct: 212 LLIA 215

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 34.3 bits (77), Expect = 0.002
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 13  FSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT 65
           FSPD R++++ S D T R+W+    SL+R L       V    F+ D K L +
Sbjct: 378 FSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT-SRVTSLDFSPDGKSLAS 429

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	65
KOG0271|consensus	480		99.78
KOG0272|consensus	459		99.71
KOG0263|consensus	707		99.69
KOG0266|consensus	456		99.64
KOG0272|consensus	459		99.64
KOG0263|consensus	707		99.63
KOG0271|consensus	480		99.62
KOG0286|consensus	343		99.6
KOG1539|consensus	910		99.59
KOG0286|consensus	343		99.58
KOG0284|consensus	464		99.57
KOG0279|consensus	315		99.57
PTZ00421	493	coronin; Provisional	99.54
KOG0318|consensus	603		99.54
KOG0266|consensus	456		99.52
KOG1407|consensus	313		99.52
KOG0291|consensus	893		99.52
KOG0315|consensus	311		99.52
KOG0273|consensus	524		99.49
KOG1034|consensus	385		99.48
KOG0279|consensus	315		99.47
KOG0296|consensus	399		99.47
KOG0645|consensus	312		99.46
KOG0645|consensus	312		99.46
PTZ00421	493	coronin; Provisional	99.46
KOG0273|consensus	524		99.45
KOG0283|consensus	712		99.44
KOG0293|consensus	519		99.42
KOG0295|consensus	406		99.42
KOG0265|consensus	338		99.41
KOG0285|consensus	460		99.4
KOG0319|consensus	775		99.39
PTZ00420	568	coronin; Provisional	99.39
KOG0650|consensus	733		99.39
KOG0973|consensus	942		99.38
KOG2394|consensus	636		99.38
KOG0318|consensus	603		99.38
KOG1445|consensus	1012		99.37
KOG0295|consensus	406		99.37
PTZ00420	568	coronin; Provisional	99.36
KOG0293|consensus	519		99.36
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.35
KOG0289|consensus	506		99.35
KOG0315|consensus	311		99.32
KOG0291|consensus	893		99.31
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.31
KOG0288|consensus	459		99.31
KOG1273|consensus	405		99.29
KOG0283|consensus	712		99.29
KOG0284|consensus	464		99.29
KOG0264|consensus	422		99.29
KOG0319|consensus	775		99.29
KOG0275|consensus	508		99.28
KOG2110|consensus	391		99.27
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.26
KOG0643|consensus	327		99.25
KOG0640|consensus	430		99.24
KOG4283|consensus	397		99.24
KOG0278|consensus	334		99.24
KOG0285|consensus	460		99.24
KOG0305|consensus	484		99.23
KOG2394|consensus	636		99.23
KOG1273|consensus	405		99.22
KOG0292|consensus	1202		99.22
KOG0282|consensus	503		99.2
KOG0294|consensus	362		99.19
KOG2111|consensus	346		99.19
KOG0641|consensus	350		99.19
KOG0310|consensus	487		99.19
KOG0289|consensus	506		99.18
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.18
KOG0973|consensus	942		99.17
KOG0316|consensus	307		99.16
KOG0296|consensus	399		99.16
KOG0643|consensus	327		99.16
KOG0269|consensus	839		99.15
KOG0292|consensus	1202		99.15
KOG0313|consensus	423		99.15
KOG0276|consensus	794		99.15
KOG0316|consensus	307		99.15
KOG1063|consensus	764		99.14
KOG0265|consensus	338		99.14
KOG0306|consensus	888		99.13
KOG1063|consensus	764		99.12
KOG0278|consensus	334		99.12
KOG0302|consensus	440		99.12
KOG0308|consensus	735		99.11
KOG0277|consensus	311		99.11
KOG0772|consensus	641		99.1
KOG0322|consensus	323		99.09
KOG1009|consensus	434		99.09
KOG1274|consensus	933		99.08
KOG1446|consensus	311		99.08
KOG0306|consensus	888		99.07
KOG1446|consensus	311		99.07
KOG2096|consensus	420		99.07
PLN00181	793	protein SPA1-RELATED; Provisional	99.06
KOG1310|consensus	758		99.06
KOG0303|consensus	472		99.06
KOG0268|consensus	433		99.05
KOG1408|consensus	1080		99.03
KOG0299|consensus	479		99.03
KOG0275|consensus	508		99.02
KOG2096|consensus	420		99.02
KOG0303|consensus	472		99.01
KOG0300|consensus	481		99.01
KOG1407|consensus	313		99.0
PLN00181	793	protein SPA1-RELATED; Provisional	99.0
KOG0282|consensus	503		99.0
KOG1007|consensus	370		99.0
KOG1009|consensus	434		99.0
KOG0640|consensus	430		98.99
KOG0264|consensus	422		98.99
KOG0974|consensus	967		98.99
KOG0302|consensus	440		98.98
KOG0281|consensus	499		98.97
KOG1538|consensus	1081		98.97
KOG0269|consensus	839		98.97
KOG0267|consensus	825		98.96
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.95
KOG0267|consensus	825		98.95
KOG0281|consensus	499		98.94
KOG0772|consensus	641		98.94
KOG0276|consensus	794		98.93
KOG0646|consensus	476		98.92
KOG0313|consensus	423		98.9
KOG0647|consensus	347		98.9
KOG1524|consensus	737		98.89
KOG0646|consensus	476		98.89
KOG0771|consensus	398		98.88
KOG0270|consensus	463		98.88
KOG0308|consensus	735		98.88
KOG0647|consensus	347		98.88
KOG0300|consensus	481		98.86
KOG0294|consensus	362		98.86
KOG1036|consensus	323		98.82
KOG4227|consensus	609		98.82
KOG1538|consensus	1081		98.8
KOG2106|consensus	626		98.79
KOG0305|consensus	484		98.78
KOG1523|consensus	361		98.77
KOG1332|consensus	299		98.74
KOG0639|consensus	705		98.73
KOG0277|consensus	311		98.73
KOG0290|consensus	364		98.69
KOG0274|consensus	537		98.68
KOG1524|consensus	737		98.67
KOG0771|consensus	398		98.66
KOG0268|consensus	433		98.66
KOG0310|consensus	487		98.65
KOG0307|consensus	1049		98.65
KOG2139|consensus	445		98.65
KOG2110|consensus	391		98.65
PRK05137	435	tolB translocation protein TolB; Provisional	98.61
KOG2055|consensus	514		98.61
PRK01742	429	tolB translocation protein TolB; Provisional	98.61
KOG0301|consensus	745		98.6
KOG0274|consensus	537		98.6
KOG1539|consensus	910		98.58
KOG1408|consensus	1080		98.56
COG4946	668	Uncharacterized protein related to the periplasmic	98.56
COG2319	466	FOG: WD40 repeat [General function prediction only	98.55
KOG0639|consensus	705		98.54
KOG2445|consensus	361		98.54
PRK02889	427	tolB translocation protein TolB; Provisional	98.52
KOG1272|consensus	545		98.52
KOG4328|consensus	498		98.52
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.51
KOG1034|consensus	385		98.51
KOG1963|consensus	792		98.5
KOG0321|consensus	720		98.5
KOG1332|consensus	299		98.49
KOG2139|consensus	445		98.48
KOG2445|consensus	361		98.48
KOG0649|consensus	325		98.47
KOG1445|consensus	1012		98.47
KOG2919|consensus	406		98.46
KOG0299|consensus	479		98.46
KOG0288|consensus	459		98.45
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.44
KOG1274|consensus	933		98.43
KOG0644|consensus	1113		98.42
KOG1963|consensus	792		98.41
KOG2055|consensus	514		98.4
KOG0644|consensus	1113		98.4
KOG2919|consensus	406		98.39
KOG0641|consensus	350		98.38
KOG0642|consensus	577		98.38
KOG0290|consensus	364		98.38
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.38
KOG4378|consensus	673		98.37
KOG1188|consensus	376		98.35
KOG4283|consensus	397		98.34
PRK00178	430	tolB translocation protein TolB; Provisional	98.34
PRK03629	429	tolB translocation protein TolB; Provisional	98.33
KOG0307|consensus	1049		98.33
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.32
PRK04922	433	tolB translocation protein TolB; Provisional	98.31
KOG4497|consensus	447		98.27
KOG4547|consensus	541		98.26
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.26
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.25
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.25
KOG1272|consensus	545		98.21
KOG0301|consensus	745		98.21
KOG0642|consensus	577		98.19
PRK03629	429	tolB translocation protein TolB; Provisional	98.19
PRK01742	429	tolB translocation protein TolB; Provisional	98.18
PRK01029	428	tolB translocation protein TolB; Provisional	98.17
PRK02889	427	tolB translocation protein TolB; Provisional	98.14
PRK04792	448	tolB translocation protein TolB; Provisional	98.13
KOG0270|consensus	463		98.12
KOG4328|consensus	498		98.1
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	98.1
KOG1523|consensus	361		98.08
KOG4378|consensus	673		98.08
PRK05137	435	tolB translocation protein TolB; Provisional	98.07
KOG2048|consensus	691		98.07
KOG1007|consensus	370		98.05
KOG0649|consensus	325		98.01
KOG1036|consensus	323		97.99
KOG4497|consensus	447		97.98
KOG0322|consensus	323		97.98
KOG2041|consensus	1189		97.97
KOG1409|consensus	404		97.93
PRK04922	433	tolB translocation protein TolB; Provisional	97.93
PRK00178	430	tolB translocation protein TolB; Provisional	97.88
KOG2315|consensus	566		97.86
KOG3914|consensus	390		97.85
KOG2106|consensus	626		97.84
KOG3881|consensus	412		97.8
KOG4640|consensus	665		97.78
KOG2048|consensus	691		97.78
KOG0280|consensus	339		97.78
KOG4547|consensus	541		97.73
PRK04792	448	tolB translocation protein TolB; Provisional	97.72
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.7
PRK01029	428	tolB translocation protein TolB; Provisional	97.69
KOG0650|consensus	733		97.63
KOG1334|consensus	559		97.62
KOG4640|consensus	665		97.61
KOG1334|consensus	559		97.6
KOG3881|consensus	412		97.6
KOG2321|consensus	703		97.59
KOG1240|consensus	1431		97.58
KOG2079|consensus	1206		97.55
KOG3914|consensus	390		97.55
KOG1188|consensus	376		97.54
KOG1587|consensus	555		97.52
PRK11028	330	6-phosphogluconolactonase; Provisional	97.52
COG4946	668	Uncharacterized protein related to the periplasmic	97.49
COG2319	466	FOG: WD40 repeat [General function prediction only	97.48
PRK04043	419	tolB translocation protein TolB; Provisional	97.48
KOG4227|consensus	609		97.46
PRK04043	419	tolB translocation protein TolB; Provisional	97.43
KOG4532|consensus	344		97.39
KOG1587|consensus	555		97.36
KOG2111|consensus	346		97.36
KOG2314|consensus	698		97.35
KOG4190|consensus	1034		97.34
KOG0280|consensus	339		97.29
KOG4714|consensus	319		97.28
KOG3621|consensus	726		97.27
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.25
KOG1832|consensus	1516		97.23
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.22
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.21
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.17
KOG1310|consensus	758		97.17
KOG1240|consensus	1431		97.17
KOG4714|consensus	319		97.16
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.14
KOG2066|consensus	846		97.13
PRK11028	330	6-phosphogluconolactonase; Provisional	97.1
KOG0321|consensus	720		97.04
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.01
KOG2321|consensus	703		96.96
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	96.88
KOG1517|consensus	1387		96.87
KOG2314|consensus	698		96.85
KOG1645|consensus	463		96.85
KOG1354|consensus	433		96.83
KOG3617|consensus	1416		96.77
KOG2315|consensus	566		96.73
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	96.73
KOG1064|consensus	2439		96.7
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	96.68
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.48
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	96.46
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	96.41
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.4
KOG2695|consensus	425		96.36
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.29
PRK13616	591	lipoprotein LpqB; Provisional	96.26
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	96.23
KOG1409|consensus	404		96.21
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.19
KOG0974|consensus	967		96.1
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.07
KOG1920|consensus	1265		95.94
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	95.74
KOG3617|consensus	1416		95.72
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	95.69
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	95.64
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.61
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.6
KOG2395|consensus	644		95.52
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	95.47
KOG2041|consensus	1189		95.45
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	95.39
KOG4499|consensus	310		95.22
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	95.21
KOG3621|consensus	726		95.19
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.18
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.0
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	94.83
KOG1912|consensus	1062		94.78
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.68
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	94.68
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.22
KOG3630|consensus	1405		94.01
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	93.48
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	93.13
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	93.11
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	92.7
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	92.69
PRK02888	635	nitrous-oxide reductase; Validated	92.68
KOG0309|consensus	1081		92.63
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	92.56
KOG1275|consensus	1118		92.5
KOG0309|consensus	1081		92.5
COG5167	776	VID27 Protein involved in vacuole import and degra	92.45
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	92.42
KOG1354|consensus	433		92.2
KOG1920|consensus	1265		91.92
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	91.83
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	91.82
KOG1517|consensus	1387		91.39
KOG2377|consensus	657		91.23
PRK10115	686	protease 2; Provisional	91.17
KOG0882|consensus	558		91.14
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	91.08
PRK13616	591	lipoprotein LpqB; Provisional	90.54
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	90.46
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	90.41
KOG1064|consensus	2439		90.37
KOG0882|consensus	558		88.84
KOG4532|consensus	344		88.78
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	88.65
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	88.54
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	88.45
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	88.15
KOG2695|consensus	425		87.97
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	87.63
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	87.08
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	86.8
KOG1645|consensus	463		86.51
KOG2066|consensus	846		85.8
COG3211	616	PhoX Predicted phosphatase [General function predi	85.67
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	85.01
KOG4649|consensus	354		84.26
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	83.29
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	83.23
PF12566	122	DUF3748: Protein of unknown function (DUF3748); In	82.3
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	82.11
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	81.9

>KOG0271|consensus

Probab=99.78  E-value=3.1e-18  Score=80.12  Aligned_cols=64  Identities=28%  Similarity=0.421  Sum_probs=60.7

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +.+|.+.|.++.|+|++..+++++.|..+++||+.+.....+..+ |...|.+++|+||++.|+|
T Consensus       111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~Kg-H~~WVlcvawsPDgk~iAS  174 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKG-HKNWVLCVAWSPDGKKIAS  174 (480)
T ss_pred             cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecC-CccEEEEEEECCCcchhhc
Confidence            468999999999999999999999999999999999999999999 9999999999999999875

>KOG0272|consensus

Probab=99.71  E-value=7.8e-17  Score=75.90  Aligned_cols=63  Identities=24%  Similarity=0.313  Sum_probs=60.5

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +||...|.++.|.++|..+++|+.|..-++||+++++.+..+.+ |...|..+.|+|+|..++|
T Consensus       300 EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lAT  362 (459)
T KOG0272|consen  300 EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLAT  362 (459)
T ss_pred             cccccccceeEecCCCceeeccCccchhheeecccCcEEEEecc-cccceeeEeECCCceEEee
Confidence            57999999999999999999999999999999999999999999 9999999999999999986

>KOG0263|consensus

Probab=99.69  E-value=2.1e-16  Score=78.18  Aligned_cols=63  Identities=27%  Similarity=0.351  Sum_probs=60.1

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|.+++-++.|+|++.++++|+.|..|++|+..++..++.+.+ |..+|.+++|+|+|+++++
T Consensus       532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G-H~~~V~al~~Sp~Gr~LaS  594 (707)
T KOG0263|consen  532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG-HKGPVTALAFSPCGRYLAS  594 (707)
T ss_pred             cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC-CCCceEEEEEcCCCceEee
Confidence            47889999999999999999999999999999999999999999 9999999999999999985

>KOG0266|consensus

Probab=99.64  E-value=7.3e-15  Score=70.97  Aligned_cols=64  Identities=33%  Similarity=0.514  Sum_probs=60.2

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |++|...|++++|+|+++.+++++.|+.+++|++.+++....+.. |...|..++|++++.++++
T Consensus       242 l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~-hs~~is~~~f~~d~~~l~s  305 (456)
T KOG0266|consen  242 LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG-HSDGISGLAFSPDGNLLVS  305 (456)
T ss_pred             ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec-cCCceEEEEECCCCCEEEE
Confidence            468999999999999999999999999999999999999999999 9999999999999998864

>KOG0272|consensus

Probab=99.64  E-value=1e-15  Score=72.27  Aligned_cols=64  Identities=28%  Similarity=0.402  Sum_probs=58.8

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEcc-CCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL-DSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~i~s   65 (65)
                      |.+|...|..+.|+|+|..+++++.|+..++|+++....+.++.. |.+.|..++|+| .|++++|
T Consensus       341 L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA-H~nlVS~Vk~~p~~g~fL~T  405 (459)
T KOG0272|consen  341 LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA-HSNLVSQVKYSPQEGYFLVT  405 (459)
T ss_pred             ecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccc-ccchhhheEecccCCeEEEE
Confidence            468999999999999999999999999999999998888889988 999999999998 6777764

>KOG0263|consensus

Probab=99.63  E-value=3.4e-15  Score=74.08  Aligned_cols=64  Identities=28%  Similarity=0.520  Sum_probs=60.4

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |.+|+++|+.+.|+|+.+.++++++|..+++|.+++...+....+ |..+|+.++|+|.|.+++|
T Consensus       447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~G-H~~PVwdV~F~P~GyYFat  510 (707)
T KOG0263|consen  447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKG-HLAPVWDVQFAPRGYYFAT  510 (707)
T ss_pred             eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecC-CCcceeeEEecCCceEEEe
Confidence            458999999999999999999999999999999999999989998 9999999999999999875

>KOG0271|consensus

Probab=99.62  E-value=2.4e-15  Score=70.73  Aligned_cols=63  Identities=27%  Similarity=0.517  Sum_probs=59.9

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|+..|..+.|+|+++++++++.|..|++|+.++++.+.++.+ |-..|..++|+.|.+.++|
T Consensus       364 tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG-Hv~~VYqvawsaDsRLlVS  426 (480)
T KOG0271|consen  364 TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG-HVAAVYQVAWSADSRLLVS  426 (480)
T ss_pred             hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh-ccceeEEEEeccCccEEEE
Confidence            57999999999999999999999999999999999999999999 9999999999999998875

>KOG0286|consensus

Probab=99.60  E-value=3.2e-14  Score=65.14  Aligned_cols=64  Identities=19%  Similarity=0.339  Sum_probs=58.2

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |++|.++|.++.|+++++.+++++.|+.+.+|+.-+.....-+.- ....|..++|+|.++++++
T Consensus        51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-~s~WVMtCA~sPSg~~VAc  114 (343)
T KOG0286|consen   51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-PSSWVMTCAYSPSGNFVAC  114 (343)
T ss_pred             ecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec-CceeEEEEEECCCCCeEEe
Confidence            689999999999999999999999999999999988777666666 6789999999999999875

>KOG1539|consensus

Probab=99.59  E-value=2.1e-14  Score=72.30  Aligned_cols=63  Identities=29%  Similarity=0.355  Sum_probs=57.9

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +.+|++.|+..+|+|+|+|+++++.|+.+++||+.++..+-.+.-  ...+..+.|+|+|++++|
T Consensus       572 f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v--d~~~~sls~SPngD~LAT  634 (910)
T KOG1539|consen  572 FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV--DSPCTSLSFSPNGDFLAT  634 (910)
T ss_pred             hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec--CCcceeeEECCCCCEEEE
Confidence            357999999999999999999999999999999999999888774  788999999999999985

>KOG0286|consensus

Probab=99.58  E-value=3.1e-14  Score=65.17  Aligned_cols=63  Identities=16%  Similarity=0.267  Sum_probs=59.2

Q ss_pred             CccccceEEEEECC-CCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSP-DCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|.++|.++++.| +++.+++++.|...++||++.+....++.+ |...|+.++|.|+|.-++|
T Consensus       183 ~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~g-hesDINsv~ffP~G~afat  246 (343)
T KOG0286|consen  183 HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEG-HESDINSVRFFPSGDAFAT  246 (343)
T ss_pred             cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecc-cccccceEEEccCCCeeee
Confidence            57999999999999 889999999999999999999999999999 9999999999999987764

>KOG0284|consensus

Probab=99.57  E-value=6.8e-15  Score=69.48  Aligned_cols=64  Identities=22%  Similarity=0.319  Sum_probs=60.0

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |.+|..+|.+++|+|....+++++.|..|++||.+++.++.++.. |+..|..+.|+|++.+++|
T Consensus       218 L~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~-HKntVl~~~f~~n~N~Llt  281 (464)
T KOG0284|consen  218 LRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHG-HKNTVLAVKFNPNGNWLLT  281 (464)
T ss_pred             eccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhh-ccceEEEEEEcCCCCeeEE
Confidence            468889999999999888899999999999999999999999999 9999999999999998875

>KOG0279|consensus

Probab=99.57  E-value=7.4e-14  Score=63.56  Aligned_cols=64  Identities=22%  Similarity=0.350  Sum_probs=59.5

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ++||.-.|..+..++++++.++++.|+.+++||+..++....+.+ |...|.+++++++.++|+|
T Consensus        59 ~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~G-H~~dVlsva~s~dn~qivS  122 (315)
T KOG0279|consen   59 LTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVG-HTKDVLSVAFSTDNRQIVS  122 (315)
T ss_pred             eeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEe-cCCceEEEEecCCCceeec
Confidence            467888899999999999999999999999999999999999999 9999999999999998875

>PTZ00421 coronin; Provisional

Probab=99.54  E-value=2.7e-13  Score=66.23  Aligned_cols=64  Identities=22%  Similarity=0.343  Sum_probs=56.6

Q ss_pred             CCccccceEEEEECCCC-CEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDC-RLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |.+|...|..+.|+|++ +.+++++.|+.+++|++..+..+..+.. |...|.+++|+|++..+++
T Consensus       121 L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~-h~~~V~sla~spdG~lLat  185 (493)
T PTZ00421        121 LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC-HSDQITSLEWNLDGSLLCT  185 (493)
T ss_pred             ecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC-CCCceEEEEEECCCCEEEE
Confidence            35688899999999975 6899999999999999998888888877 8899999999999998864

>KOG0318|consensus

Probab=99.54  E-value=2.2e-13  Score=66.21  Aligned_cols=64  Identities=25%  Similarity=0.319  Sum_probs=58.3

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeec--cCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGT--ANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ..|...|.++.|+|+|..+++.+.|+.+.+|+-.+++.+..+..  .|.+.+..++|+||++.++|
T Consensus       187 r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T  252 (603)
T KOG0318|consen  187 REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLT  252 (603)
T ss_pred             cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEE
Confidence            45888999999999999999999999999999999998888873  48999999999999999875

>KOG0266|consensus

Probab=99.52  E-value=3.2e-13  Score=65.45  Aligned_cols=63  Identities=30%  Similarity=0.469  Sum_probs=57.1

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEEC-CCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNT-EDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...|..+.|+|+++.+++++.|..+++|++ ..+..++.+.+ |...|.+++|+|+++.+++
T Consensus       200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g-H~~~v~~~~f~p~g~~i~S  263 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG-HSTYVTSVAFSPDGNLLVS  263 (456)
T ss_pred             cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC-CCCceEEEEecCCCCEEEE
Confidence            468889999999999999999999999999999 55688888988 9999999999999977764

>KOG1407|consensus

Probab=99.52  E-value=7.6e-14  Score=63.21  Aligned_cols=64  Identities=27%  Similarity=0.424  Sum_probs=59.3

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |+.|.....++.|+|+|+++++|+.|..+.+||++...+.+.+.. +..+|..+.|+-+|++|++
T Consensus       185 i~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR-ldwpVRTlSFS~dg~~lAS  248 (313)
T KOG1407|consen  185 IKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR-LDWPVRTLSFSHDGRMLAS  248 (313)
T ss_pred             cccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc-ccCceEEEEeccCcceeec
Confidence            467888899999999999999999999999999998888888888 8999999999999999985

>KOG0291|consensus

Probab=99.52  E-value=3.1e-13  Score=67.93  Aligned_cols=63  Identities=25%  Similarity=0.342  Sum_probs=59.1

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ++|...+.+++++|||+.+++|+.|+.|++|+..++-++.++.. |...|..++|+..++.++|
T Consensus       347 QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte-Hts~Vt~v~f~~~g~~lls  409 (893)
T KOG0291|consen  347 QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE-HTSGVTAVQFTARGNVLLS  409 (893)
T ss_pred             cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEecc-CCCceEEEEEEecCCEEEE
Confidence            47888999999999999999999999999999999999999999 9999999999999988764

>KOG0315|consensus

Probab=99.52  E-value=5.3e-13  Score=60.33  Aligned_cols=64  Identities=50%  Similarity=0.926  Sum_probs=55.9

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCC-ceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDF-SLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ++.|.+.+..+.++|+++++++++.|..+++|+.++- +....+.+ |...++..+||.++.+|+|
T Consensus       211 ~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g-h~rWvWdc~FS~dg~YlvT  275 (311)
T KOG0315|consen  211 FQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG-HQRWVWDCAFSADGEYLVT  275 (311)
T ss_pred             eecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec-CCceEEeeeeccCccEEEe
Confidence            3568899999999999999999999999999999876 44445566 8899999999999999985

>KOG0273|consensus

Probab=99.49  E-value=7.1e-13  Score=63.76  Aligned_cols=64  Identities=27%  Similarity=0.427  Sum_probs=57.4

Q ss_pred             CCccccceEEEEECCCCC---------EEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCR---------LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |.+|...|+.+.|+|.+.         .+++++.++.|++|++..+.++..+.. |..+|.+++|+|+++++++
T Consensus       397 l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k-H~~pVysvafS~~g~ylAs  469 (524)
T KOG0273|consen  397 LQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK-HQEPVYSVAFSPNGRYLAS  469 (524)
T ss_pred             hhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc-CCCceEEEEecCCCcEEEe
Confidence            456888899999998654         488999999999999999999999988 9999999999999999985

>KOG1034|consensus

Probab=99.48  E-value=4.8e-13  Score=62.19  Aligned_cols=65  Identities=25%  Similarity=0.388  Sum_probs=58.0

Q ss_pred             CCccccceEEEEECCCC-CEEEEecCCCcEEEEECCCCceEEEeec--cCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDC-RLLATTSADQTARIWNTEDFSLVRELGT--ANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +.+|...|..+.++|.. +++++++.|..+++|++++..++..+.+  .|+..|.++.|++++.+|+|
T Consensus       131 ~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~S  198 (385)
T KOG1034|consen  131 YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIAS  198 (385)
T ss_pred             eeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeec
Confidence            35788999999999964 7899999999999999999999888765  58999999999999998875

>KOG0279|consensus

Probab=99.47  E-value=1.5e-12  Score=59.43  Aligned_cols=61  Identities=23%  Similarity=0.290  Sum_probs=55.1

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+|++.+..+.++|||..+++++.++...+|+++.++.+..+.  +...|.+++|+|+...+.
T Consensus       189 ~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~--a~~~v~sl~fspnrywL~  249 (315)
T KOG0279|consen  189 IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE--AFDIVNSLCFSPNRYWLC  249 (315)
T ss_pred             ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc--CCCeEeeEEecCCceeEe
Confidence            4688999999999999999999999999999999999987777  689999999999976654

>KOG0296|consensus

Probab=99.47  E-value=1.5e-12  Score=61.09  Aligned_cols=63  Identities=24%  Similarity=0.323  Sum_probs=59.4

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|+..++++..+|+.+++++++.|..-.+|++.++.....+.+ |+..|.++.|+.++.+++|
T Consensus        61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltg-HKDSVt~~~FshdgtlLAT  123 (399)
T KOG0296|consen   61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTG-HKDSVTCCSFSHDGTLLAT  123 (399)
T ss_pred             hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecC-CCCceEEEEEccCceEEEe
Confidence            46999999999999889999999999999999999998889998 9999999999999999986

>KOG0645|consensus

Probab=99.46  E-value=1.9e-12  Score=59.01  Aligned_cols=62  Identities=32%  Similarity=0.448  Sum_probs=55.4

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCC--CceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTED--FSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +|+..|..++|+|.|+++++++.|..+.+|.-..  -+++..+.+ |.++|-+++|+++|.+++|
T Consensus        59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEG-HEnEVK~Vaws~sG~~LAT  122 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEG-HENEVKCVAWSASGNYLAT  122 (312)
T ss_pred             cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeec-cccceeEEEEcCCCCEEEE
Confidence            5888999999999999999999999999997653  356777888 9999999999999999985

>KOG0645|consensus

Probab=99.46  E-value=1.5e-12  Score=59.30  Aligned_cols=64  Identities=19%  Similarity=0.268  Sum_probs=56.1

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCC---ceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDF---SLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |+||.+.|.+++|+++|+++++++.+..|.+|.++..   .++..++. |...|-.+.|+|....++|
T Consensus       101 lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~-HtqDVK~V~WHPt~dlL~S  167 (312)
T KOG0645|consen  101 LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE-HTQDVKHVIWHPTEDLLFS  167 (312)
T ss_pred             eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc-ccccccEEEEcCCcceeEE
Confidence            5789999999999999999999999999999999854   44556677 9999999999998888764

>PTZ00421 coronin; Provisional

Probab=99.46  E-value=2.4e-12  Score=63.06  Aligned_cols=62  Identities=21%  Similarity=0.220  Sum_probs=51.9

Q ss_pred             CccccceEEEEECC-CCCEEEEecCCCcEEEEECCCC-------ceEEEeeccCCCcEeEEEEccCC-cEEe
Q psy7061           2 AAHRAYGLHCVFSP-DCRLLATTSADQTARIWNTEDF-------SLVRELGTANQRWVWDAAFTLDS-KFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~-~~i~   64 (65)
                      .+|.+.|.++.|+| +++.+++++.|+.+++|++...       ..+..+.+ |...|.+++|+|++ ..++
T Consensus        72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLa  142 (493)
T PTZ00421         72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLA  142 (493)
T ss_pred             eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC-CCCcEEEEEeCcCCCCEEE
Confidence            57899999999999 7889999999999999998754       24556667 89999999999986 4554

>KOG0273|consensus

Probab=99.45  E-value=1.8e-12  Score=62.40  Aligned_cols=62  Identities=24%  Similarity=0.353  Sum_probs=56.7

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      |..|+..|++++|+|+++++++|+.++.|.+|+.+.++......+  .+.|..++|+.+|.++.
T Consensus       448 f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~--~~~Ifel~Wn~~G~kl~  509 (524)
T KOG0273|consen  448 LMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG--TGGIFELCWNAAGDKLG  509 (524)
T ss_pred             eccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC--CCeEEEEEEcCCCCEEE
Confidence            357999999999999999999999999999999999999988885  67799999999998774

>KOG0283|consensus

Probab=99.44  E-value=7e-13  Score=66.42  Aligned_cols=61  Identities=21%  Similarity=0.375  Sum_probs=53.4

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccC-CcEEe
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD-SKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~i~   64 (65)
                      ++||.++|..+.|+. .+.|++++.|..|++|++....++..+.  |.+-|+|++|+|. .++++
T Consensus       365 f~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVaFnPvDDryFi  426 (712)
T KOG0283|consen  365 FKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVAFNPVDDRYFI  426 (712)
T ss_pred             hhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe--cCCeeEEEEecccCCCcEe
Confidence            468999999999986 5678999999999999999999998888  8999999999994 44544

>KOG0293|consensus

Probab=99.42  E-value=7.3e-13  Score=63.19  Aligned_cols=65  Identities=20%  Similarity=0.209  Sum_probs=57.4

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |.+|...|..+.|+||.+++++++.+..+.+|+.+++.....+...+...+.+++|.|||..+++
T Consensus       265 lvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~  329 (519)
T KOG0293|consen  265 LVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVT  329 (519)
T ss_pred             eecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEe
Confidence            45799999999999999999999999999999999999887776535789999999999987764

>KOG0295|consensus

Probab=99.42  E-value=2.7e-12  Score=60.28  Aligned_cols=64  Identities=19%  Similarity=0.480  Sum_probs=58.5

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |.+|.+.|..+.|+|.|++++++..|+.+++|++++..+...+.. |..-+.++.|+.+..+++|
T Consensus       330 L~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a-h~hfvt~lDfh~~~p~VvT  393 (406)
T KOG0295|consen  330 LVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA-HEHFVTSLDFHKTAPYVVT  393 (406)
T ss_pred             EecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC-CcceeEEEecCCCCceEEe
Confidence            457999999999999999999999999999999999999888887 8999999999988877764

>KOG0265|consensus

Probab=99.41  E-value=7.6e-12  Score=57.69  Aligned_cols=64  Identities=20%  Similarity=0.268  Sum_probs=56.2

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECC-CCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTE-DFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +.+|.+.|+.+.|+|++..+++++.|..+.+|+.. ..+....+.+ |+..|..+.|.+++..|+|
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg-HsgAVM~l~~~~d~s~i~S  107 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG-HSGAVMELHGMRDGSHILS  107 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecc-ccceeEeeeeccCCCEEEE
Confidence            46799999999999999999999999999999954 5566667777 9999999999999988864

>KOG0285|consensus

Probab=99.40  E-value=5.2e-12  Score=59.60  Aligned_cols=64  Identities=23%  Similarity=0.322  Sum_probs=59.4

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +++|.+.|.++++.|..+++++++.|+.+.+||+.++....++.+ |-..|..+++++...|+++
T Consensus       147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltG-hi~~vr~vavS~rHpYlFs  210 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTG-HIETVRGVAVSKRHPYLFS  210 (460)
T ss_pred             hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecc-hhheeeeeeecccCceEEE
Confidence            468999999999999889999999999999999999999999998 8999999999998888764

>KOG0319|consensus

Probab=99.39  E-value=5.6e-12  Score=63.24  Aligned_cols=64  Identities=30%  Similarity=0.443  Sum_probs=60.4

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |.+|+..+.++.|++..+.+++++.|..+++|.+++..++.++.+ |...|..+.|-.++++++|
T Consensus       501 LsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG-H~~aVlra~F~~~~~qliS  564 (775)
T KOG0319|consen  501 LSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG-HTSAVLRASFIRNGKQLIS  564 (775)
T ss_pred             eeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC-ccceeEeeeeeeCCcEEEe
Confidence            578999999999999999999999999999999999999999999 9999999999999988875

>PTZ00420 coronin; Provisional

Probab=99.39  E-value=1.9e-11  Score=60.75  Aligned_cols=62  Identities=19%  Similarity=0.266  Sum_probs=51.0

Q ss_pred             CCccccceEEEEECCC-CCEEEEecCCCcEEEEECCCCc--------eEEEeeccCCCcEeEEEEccCCcEE
Q psy7061           1 MAAHRAYGLHCVFSPD-CRLLATTSADQTARIWNTEDFS--------LVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      +.+|.+.|.+++|+|+ +..+++++.|+.+++|++....        .+..+.+ |...|.+++|+|++..+
T Consensus        70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V~sVaf~P~g~~i  140 (568)
T PTZ00420         70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKISIIDWNPMNYYI  140 (568)
T ss_pred             EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcEEEEEECCCCCeE
Confidence            3578999999999996 7899999999999999997532        2234555 88999999999998765

>KOG0650|consensus

Probab=99.39  E-value=6.2e-12  Score=62.28  Aligned_cols=59  Identities=24%  Similarity=0.262  Sum_probs=54.2

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcE
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF   62 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   62 (65)
                      .+|++.+.++...|.|.++++|+.+|.|++|.+.+++++.....  ...|.+++|+|.+..
T Consensus       397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~--d~~I~~vaw~P~~~~  455 (733)
T KOG0650|consen  397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF--DSEIRSVAWNPLSDL  455 (733)
T ss_pred             eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee--cceeEEEEecCCCCc
Confidence            58999999999999999999999999999999999999999884  678999999998653

>KOG0973|consensus

Probab=99.38  E-value=2.1e-12  Score=66.24  Aligned_cols=64  Identities=28%  Similarity=0.458  Sum_probs=60.4

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |.+|.++|..+.|+|++.++++++.|..|.+|+..+...+..+.+ |...|-.+.|.|-|++++|
T Consensus       125 l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~-H~s~VKGvs~DP~Gky~AS  188 (942)
T KOG0973|consen  125 LRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG-HQSLVKGVSWDPIGKYFAS  188 (942)
T ss_pred             EecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec-ccccccceEECCccCeeee
Confidence            467999999999999999999999999999999999988989999 9999999999999999985

>KOG2394|consensus

Probab=99.38  E-value=8.8e-13  Score=64.42  Aligned_cols=59  Identities=25%  Similarity=0.316  Sum_probs=51.5

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +.|....|+|||+++++.++|+.+++|+.++.+....... .-....|++|+|||++|++
T Consensus       291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS-YFGGLLCvcWSPDGKyIvt  349 (636)
T KOG2394|consen  291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS-YFGGLLCVCWSPDGKYIVT  349 (636)
T ss_pred             ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh-hccceEEEEEcCCccEEEe
Confidence            3577889999999999999999999999998877666665 5578999999999999985

>KOG0318|consensus

Probab=99.38  E-value=9.1e-12  Score=60.83  Aligned_cols=64  Identities=19%  Similarity=0.210  Sum_probs=54.6

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ..|.+.++.++|+|++.+++++...+.+-+|+..+.......-..|...|.+++|+|+.+.++|
T Consensus       484 ~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vAT  547 (603)
T KOG0318|consen  484 LEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVAT  547 (603)
T ss_pred             ecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEe
Confidence            4588999999999999999999999999999998776633332238999999999999988875

>KOG1445|consensus

Probab=99.37  E-value=4.3e-13  Score=66.98  Aligned_cols=64  Identities=22%  Similarity=0.339  Sum_probs=57.8

Q ss_pred             CCccccceEEEEECC-CCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSP-DCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |+.|..+|+.+.|+| ....+++++.|..+++||++++.....+.+ |.+.+..++|+|+|+.++|
T Consensus       673 lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g-HtdqIf~~AWSpdGr~~At  737 (1012)
T KOG1445|consen  673 LTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG-HTDQIFGIAWSPDGRRIAT  737 (1012)
T ss_pred             eecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheecc-CcCceeEEEECCCCcceee
Confidence            457889999999999 457889999999999999999988888888 9999999999999999875

>KOG0295|consensus

Probab=99.37  E-value=1.5e-11  Score=57.91  Aligned_cols=63  Identities=24%  Similarity=0.434  Sum_probs=52.7

Q ss_pred             CccccceEEEEECCC---------------CCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPD---------------CRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ++|.-.+.+++|.|.               ++.+++++.|+.+++|++.++.++.++.+ |.+.|..++|+|.|++|+|
T Consensus       274 R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g-hdnwVr~~af~p~Gkyi~S  351 (406)
T KOG0295|consen  274 REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG-HDNWVRGVAFSPGGKYILS  351 (406)
T ss_pred             hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEec-ccceeeeeEEcCCCeEEEE
Confidence            345556666666542               24688889999999999999999999999 9999999999999999985

>PTZ00420 coronin; Provisional

Probab=99.36  E-value=3.2e-11  Score=60.02  Aligned_cols=62  Identities=11%  Similarity=0.182  Sum_probs=51.9

Q ss_pred             CccccceEEEEECCCCCE-EEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRL-LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...|..+.|+|++.. +++++.|+.+++|++..+.....+.  +...+.+++|+|+|..+++
T Consensus       122 ~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat  184 (568)
T PTZ00420        122 KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSG  184 (568)
T ss_pred             ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEE
Confidence            468889999999998765 5788899999999999887766664  4578999999999998863

>KOG0293|consensus

Probab=99.36  E-value=1.3e-11  Score=59.07  Aligned_cols=64  Identities=25%  Similarity=0.255  Sum_probs=54.9

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCce---EEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSL---VRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |..|+..|..+.|+++|+++++++.|...-+|.......   ..++.+ |..+|.-+.|+||.+++++
T Consensus       220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg-h~~~V~yi~wSPDdryLla  286 (519)
T KOG0293|consen  220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG-HSQPVSYIMWSPDDRYLLA  286 (519)
T ss_pred             HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec-ccCceEEEEECCCCCeEEe
Confidence            356889999999999999999999999999998764443   556667 9999999999999999874

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.35  E-value=3.8e-11  Score=53.91  Aligned_cols=63  Identities=35%  Similarity=0.469  Sum_probs=54.7

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +++|...|.++.|+|+++.+++++.++.+++|++........... +...+..+.|+|+++.++
T Consensus         5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~   67 (289)
T cd00200           5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAASADGTYLA   67 (289)
T ss_pred             hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec-CCcceeEEEECCCCCEEE
Confidence            457899999999999999999999999999999998777667776 778888999999987665

>KOG0289|consensus

Probab=99.35  E-value=8e-12  Score=59.93  Aligned_cols=58  Identities=21%  Similarity=0.303  Sum_probs=54.1

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+.+..|+|||..++++..|+.+++|++.++.....+.+ |...|..++|+.+|.++++
T Consensus       349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg-ht~~vk~i~FsENGY~Lat  406 (506)
T KOG0289|consen  349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG-HTGPVKAISFSENGYWLAT  406 (506)
T ss_pred             eeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC-CCCceeEEEeccCceEEEE
Confidence            477889999999999999999999999999998889998 9999999999999999874

>KOG0315|consensus

Probab=99.32  E-value=1.4e-11  Score=55.89  Aligned_cols=62  Identities=23%  Similarity=0.263  Sum_probs=53.7

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|+..|..+.|.-+|++..++++|+.+++|+++...+.+.+.  +...|+++..+|++.-+++
T Consensus        80 e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--~~spVn~vvlhpnQteLis  141 (311)
T KOG0315|consen   80 EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--HNSPVNTVVLHPNQTELIS  141 (311)
T ss_pred             eccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc--CCCCcceEEecCCcceEEe
Confidence            4688899999999999999999999999999999866655555  6799999999999877663

>KOG0291|consensus

Probab=99.31  E-value=2.7e-11  Score=61.34  Aligned_cols=63  Identities=33%  Similarity=0.303  Sum_probs=53.5

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      |.||.++|..+.|+|.+..+++++.|..|++|++-.......... ....+..++|+|+|+.++
T Consensus       474 LsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~ela  536 (893)
T KOG0291|consen  474 LSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELA  536 (893)
T ss_pred             hcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEE
Confidence            578999999999999999999999999999999876543333333 678899999999999876

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.31  E-value=1e-10  Score=51.67  Aligned_cols=57  Identities=18%  Similarity=0.286  Sum_probs=45.4

Q ss_pred             cceEEEEECCCCCEEEEecC---CCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           6 AYGLHCVFSPDCRLLATTSA---DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ..+..+.|+|+|+.++.++.   .+.+.+|+.++.+.+.....   ..+..++|+|+|+++++
T Consensus       101 ~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~---~~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen  101 QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH---SDATDVEWSPDGRYLAT  160 (194)
T ss_pred             CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc---CcEEEEEEcCCCCEEEE
Confidence            45678999999998887764   35699999997777766553   34789999999999975

>KOG0288|consensus

Probab=99.31  E-value=3.1e-11  Score=57.62  Aligned_cols=59  Identities=25%  Similarity=0.277  Sum_probs=50.5

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCC-cEeEEEEccCCcEEeC
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQR-WVWDAAFTLDSKFLLT   65 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~i~s   65 (65)
                      +...+.|+|++.++++|+.++.|++|+..+++....+...+.. .+.+++|+|.|..+++
T Consensus       389 DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Lls  448 (459)
T KOG0288|consen  389 DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLS  448 (459)
T ss_pred             ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhc
Confidence            4778899999999999999999999999999887777663333 7999999999988764

>KOG1273|consensus

Probab=99.29  E-value=4.8e-11  Score=55.72  Aligned_cols=59  Identities=24%  Similarity=0.318  Sum_probs=52.0

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCc
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK   61 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   61 (65)
                      |.+|..+|.+++|+++|+++++++.|-.+.+||+..+.+...+.  ...+|+...|+|..+
T Consensus        61 lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir--f~spv~~~q~hp~k~  119 (405)
T KOG1273|consen   61 LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR--FDSPVWGAQWHPRKR  119 (405)
T ss_pred             hhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE--ccCccceeeeccccC
Confidence            35788899999999999999999999999999999999887777  478899999988644

>KOG0283|consensus

Probab=99.29  E-value=3.1e-11  Score=60.81  Aligned_cols=60  Identities=22%  Similarity=0.397  Sum_probs=50.9

Q ss_pred             ccccceEEEEECC-CCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           3 AHRAYGLHCVFSP-DCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         3 ~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .|...|+++.|+| |.+++++|+-|+.+++|++...+.. -... -...|+.++|.|+|++.+
T Consensus       407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv-~W~D-l~~lITAvcy~PdGk~av  467 (712)
T KOG0283|consen  407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV-DWND-LRDLITAVCYSPDGKGAV  467 (712)
T ss_pred             ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE-eehh-hhhhheeEEeccCCceEE
Confidence            3888999999999 7799999999999999999866544 4444 568999999999998865

>KOG0284|consensus

Probab=99.29  E-value=3.3e-12  Score=60.76  Aligned_cols=62  Identities=18%  Similarity=0.239  Sum_probs=56.2

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+|...|..+.|.++++++++++.|..++++|++..+.+..+.+ |+..+.++.|+|-...++
T Consensus       261 h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~-Hkkdv~~~~WhP~~~~lf  322 (464)
T KOG0284|consen  261 HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG-HKKDVTSLTWHPLNESLF  322 (464)
T ss_pred             hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc-chhhheeeccccccccce
Confidence            46889999999999999999999999999999998888888998 999999999999755544

>KOG0264|consensus

Probab=99.29  E-value=6.4e-11  Score=56.65  Aligned_cols=62  Identities=24%  Similarity=0.393  Sum_probs=51.9

Q ss_pred             CccccceEEEEECC-CCCEEEEecCCCcEEEEECCCC-ceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSP-DCRLLATTSADQTARIWNTEDF-SLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+|.+.+.+++|.| ++..+++++.|+.|++||+++. ..+..+.+ |+..|.++.|+|.-..++
T Consensus       269 ~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~-H~dev~~V~WSPh~etvL  332 (422)
T KOG0264|consen  269 KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG-HEDEVFQVEWSPHNETVL  332 (422)
T ss_pred             cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC-CCcceEEEEeCCCCCcee
Confidence            46889999999999 4567899999999999999964 45667777 999999999999865543

>KOG0319|consensus

Probab=99.29  E-value=3.7e-11  Score=60.47  Aligned_cols=62  Identities=34%  Similarity=0.544  Sum_probs=57.5

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .|..+|.+++++|+.+.+++++.|...++|++........+.+ |..+++++.|+|+.+.++|
T Consensus       461 aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG-H~RGvw~V~Fs~~dq~laT  522 (775)
T KOG0319|consen  461 AHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG-HTRGVWCVSFSKNDQLLAT  522 (775)
T ss_pred             hhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC-CccceEEEEeccccceeEe
Confidence            4778999999999999999999999999999998899999999 9999999999999887764

>KOG0275|consensus

Probab=99.28  E-value=1.4e-12  Score=61.04  Aligned_cols=62  Identities=26%  Similarity=0.343  Sum_probs=55.7

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +...|.++.|+.++..+++++.||.+++|.+.++.+++.+...|..+|.++.|+.++..+++
T Consensus       262 md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS  323 (508)
T KOG0275|consen  262 MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILS  323 (508)
T ss_pred             cccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhc
Confidence            34578999999999999999999999999999999999998659999999999999877654

>KOG2110|consensus

Probab=99.27  E-value=1.4e-10  Score=54.74  Aligned_cols=63  Identities=30%  Similarity=0.393  Sum_probs=54.2

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCc-EEEEECCCCceEEEeecc-CCCcEeEEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQT-ARIWNTEDFSLVRELGTA-NQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~i~   64 (65)
                      ..|.+.+.+++|+++|.++++++..|. ++++...++..+..+..+ ....+.+++|+|+++++.
T Consensus       170 ~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~  234 (391)
T KOG2110|consen  170 NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLA  234 (391)
T ss_pred             EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEE
Confidence            469999999999999999999998886 789999999998888752 236678999999999876

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.26  E-value=2.6e-11  Score=40.77  Aligned_cols=33  Identities=33%  Similarity=0.565  Sum_probs=30.6

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEE
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWN   33 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~   33 (65)
                      +++|...|.+++|+|++..+++++.|+.+++|+
T Consensus         7 ~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    7 FRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            357999999999999999999999999999996

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0643|consensus

Probab=99.25  E-value=3.1e-10  Score=52.09  Aligned_cols=62  Identities=27%  Similarity=0.362  Sum_probs=56.3

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +.+|++.|.+++...+...+++++.|...++|+..+++.+.++..  ...|..+.|++++.+++
T Consensus        48 y~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~--~~~Vk~~~F~~~gn~~l  109 (327)
T KOG0643|consen   48 YDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT--NSPVKRVDFSFGGNLIL  109 (327)
T ss_pred             ecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec--CCeeEEEeeccCCcEEE
Confidence            368999999999999999999999999999999999999988884  78899999999988764

>KOG0640|consensus

Probab=99.24  E-value=3.4e-11  Score=56.20  Aligned_cols=63  Identities=25%  Similarity=0.392  Sum_probs=56.9

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeec-cCCCcEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGT-ANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .|++.|+.+.|++.++..++++.||.+++||--+++++.++.. +....|.+..|..++++|++
T Consensus       259 qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs  322 (430)
T KOG0640|consen  259 QHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILS  322 (430)
T ss_pred             ccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEee
Confidence            5888999999999999999999999999999999999988876 44688999999999999975

>KOG4283|consensus

Probab=99.24  E-value=7.9e-11  Score=54.72  Aligned_cols=64  Identities=34%  Similarity=0.453  Sum_probs=49.8

Q ss_pred             CCccccceEEEEECCCCCE-EEEecCCCcEEEEECCCC-ceEEEee-------------ccCCCcEeEEEEccCCcEEe
Q psy7061           1 MAAHRAYGLHCVFSPDCRL-LATTSADQTARIWNTEDF-SLVRELG-------------TANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~v~~~~~~~~~~~i~   64 (65)
                      |.+|...|.+++|+|...+ +++++.|+.+++||++.. .+...+.             ..|...|..++|+.++.+++
T Consensus       184 LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~  262 (397)
T KOG4283|consen  184 LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLA  262 (397)
T ss_pred             eccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhh
Confidence            5789999999999998775 688889999999999843 2222221             13678899999999988765

>KOG0278|consensus

Probab=99.24  E-value=1.6e-10  Score=52.72  Aligned_cols=61  Identities=16%  Similarity=0.253  Sum_probs=54.9

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+|.+.|..+.|+...+.+++++.++.|++||.+++..+.++..  ...|.++.++++++++.
T Consensus       140 ~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~--~s~VtSlEvs~dG~ilT  200 (334)
T KOG0278|consen  140 SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF--NSPVTSLEVSQDGRILT  200 (334)
T ss_pred             cCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec--CCCCcceeeccCCCEEE
Confidence            46889999999999889999999999999999999999988884  77899999999998874

>KOG0285|consensus

Probab=99.24  E-value=9.9e-11  Score=55.46  Aligned_cols=64  Identities=16%  Similarity=0.223  Sum_probs=56.1

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |.+|.+.|..+.+.|-...+++++.|+.|++||+..++....+.. |...+.+++.+|....++|
T Consensus       273 l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~-hkksvral~lhP~e~~fAS  336 (460)
T KOG0285|consen  273 LSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTH-HKKSVRALCLHPKENLFAS  336 (460)
T ss_pred             ecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeec-ccceeeEEecCCchhhhhc
Confidence            468999999999998777899999999999999999988878877 8999999999998766543

>KOG0305|consensus

Probab=99.23  E-value=5.9e-11  Score=58.00  Aligned_cols=62  Identities=21%  Similarity=0.136  Sum_probs=55.3

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      +.+|...|+.+.|+++++.+++++.|..+.+|+.........+.. |...|..++|+|-...+
T Consensus       297 ~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~-H~aAVKA~awcP~q~~l  358 (484)
T KOG0305|consen  297 LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE-HTAAVKALAWCPWQSGL  358 (484)
T ss_pred             hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEec-cceeeeEeeeCCCccCc
Confidence            357999999999999999999999999999999987777778888 99999999999965544

>KOG2394|consensus

Probab=99.23  E-value=1.3e-10  Score=57.22  Aligned_cols=53  Identities=25%  Similarity=0.365  Sum_probs=48.9

Q ss_pred             ccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEcc
Q psy7061           5 RAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL   58 (65)
Q Consensus         5 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   58 (65)
                      -+...+++|+|||++|+++++|..|.+|.+...+.+..-++ |+..|..++|.|
T Consensus       332 FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG-HkSWVs~VaFDp  384 (636)
T KOG2394|consen  332 FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG-HKSWVSVVAFDP  384 (636)
T ss_pred             ccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccc-cccceeeEeecc
Confidence            35688999999999999999999999999999998888888 999999999986

>KOG1273|consensus

Probab=99.22  E-value=6.3e-11  Score=55.36  Aligned_cols=57  Identities=26%  Similarity=0.346  Sum_probs=52.0

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           8 GLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ..++.|++-|..++.|..+|.+-+||+.+....+.+.. |-.+|.+++|+++|+.++|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsa-H~~pi~sl~WS~dgr~Llt   82 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSA-HVRPITSLCWSRDGRKLLT   82 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhc-cccceeEEEecCCCCEeee
Confidence            56889999999999999999999999998887777777 9999999999999999875

>KOG0292|consensus

Probab=99.22  E-value=2e-10  Score=59.45  Aligned_cols=64  Identities=23%  Similarity=0.382  Sum_probs=59.8

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |.+|...|..+.|++.-.|+++++.|..+++|+-++.+++..+.+ |..-|.|.+|+|....|+|
T Consensus        89 L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltG-HnHYVMcAqFhptEDlIVS  152 (1202)
T KOG0292|consen   89 LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTG-HNHYVMCAQFHPTEDLIVS  152 (1202)
T ss_pred             hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEec-CceEEEeeccCCccceEEE
Confidence            568999999999999999999999999999999999999999999 9999999999998888764

>KOG0282|consensus

Probab=99.20  E-value=7e-12  Score=60.48  Aligned_cols=64  Identities=22%  Similarity=0.302  Sum_probs=57.7

Q ss_pred             CCccccceEEEEECC-CCCEEEEecCCCcEEEEECCC-CceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSP-DCRLLATTSADQTARIWNTED-FSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +.+|+..|.++.|.| .+.++++++.|+.+++|+... +++++++.+ |...|..++|+++|..++|
T Consensus       210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-H~k~Vrd~~~s~~g~~fLS  275 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-HRKPVRDASFNNCGTSFLS  275 (503)
T ss_pred             ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc-chhhhhhhhccccCCeeee
Confidence            467999999999999 678899999999999999875 888999999 9999999999999988764

>KOG0294|consensus

Probab=99.19  E-value=3.2e-10  Score=52.91  Aligned_cols=63  Identities=22%  Similarity=0.289  Sum_probs=55.1

Q ss_pred             CccccceEEEEECCCCC--EEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCR--LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ..|.+.|+++.|.++..  ++++++.||.+.+|+...=..+..+.. |...|+.++.+|.++..++
T Consensus        80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~-H~~~Vt~lsiHPS~KLALs  144 (362)
T KOG0294|consen   80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKA-HKGQVTDLSIHPSGKLALS  144 (362)
T ss_pred             eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecc-cccccceeEecCCCceEEE
Confidence            35889999999988654  899999999999999987788888888 8888999999999988754

>KOG2111|consensus

Probab=99.19  E-value=8.1e-10  Score=51.55  Aligned_cols=63  Identities=30%  Similarity=0.371  Sum_probs=55.2

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCc-EEEEECCCCceEEEeec-cCCCcEeEEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQT-ARIWNTEDFSLVRELGT-ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~i~   64 (65)
                      +.|...|.++...-+|..+++++..|. +++|+..++..+..+.. .....+.+++|+|++.+++
T Consensus       178 ~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~La  242 (346)
T KOG2111|consen  178 NAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLA  242 (346)
T ss_pred             EcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEE
Confidence            569999999999999999999998875 88999999998888765 3457899999999999886

>KOG0641|consensus

Probab=99.19  E-value=6.1e-10  Score=50.41  Aligned_cols=59  Identities=19%  Similarity=0.298  Sum_probs=54.4

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ..|..++..|.|+.++++..|....+|+++.++.+..+.. |...+.++.|+|...++++
T Consensus       232 savaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~p-hsadir~vrfsp~a~yllt  290 (350)
T KOG0641|consen  232 SAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHP-HSADIRCVRFSPGAHYLLT  290 (350)
T ss_pred             ceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCC-CccceeEEEeCCCceEEEE
Confidence            4688899999999999999999999999999999999998 9999999999999888764

>KOG0310|consensus

Probab=99.19  E-value=4.1e-10  Score=54.61  Aligned_cols=63  Identities=24%  Similarity=0.289  Sum_probs=53.7

Q ss_pred             CCccccceEEEEECCC-CCEEEEecCCCcEEEEECCCC-ceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPD-CRLLATTSADQTARIWNTEDF-SLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |.+|+..|-+.+|+|. +..+++|+.|+.+++||.+.. ..+..+.  |..+|-.+.+-|.|..|++
T Consensus       149 l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln--hg~pVe~vl~lpsgs~ias  213 (487)
T KOG0310|consen  149 LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN--HGCPVESVLALPSGSLIAS  213 (487)
T ss_pred             ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec--CCCceeeEEEcCCCCEEEE
Confidence            4679999999999994 568999999999999999976 5565665  7899999999999888875

>KOG0289|consensus

Probab=99.18  E-value=4.7e-10  Score=54.16  Aligned_cols=63  Identities=17%  Similarity=0.284  Sum_probs=55.1

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+|++.|..+.|+-+|-+++++..|+.|++||++..+...++......++..+.|.+.|++++
T Consensus       386 pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~  448 (506)
T KOG0289|consen  386 PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLG  448 (506)
T ss_pred             CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEE
Confidence            479999999999999999999999999999999987777777653456899999999999875

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.18  E-value=1.5e-09  Score=48.78  Aligned_cols=62  Identities=32%  Similarity=0.373  Sum_probs=53.2

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .|...+..+.|++++..+++++.++.+++|++..+.....+.. +...+.+++|+|++..+++
T Consensus       217 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~  278 (289)
T cd00200         217 GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG-HTNSVTSLAWSPDGKRLAS  278 (289)
T ss_pred             hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc-cCCcEEEEEECCCCCEEEE
Confidence            4667899999999988888888899999999998888777776 8889999999999877763

>KOG0973|consensus

Probab=99.17  E-value=4.2e-10  Score=58.29  Aligned_cols=63  Identities=27%  Similarity=0.358  Sum_probs=53.2

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCC-------C-----------ceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTED-------F-----------SLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-----------~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      ..|.+.|.++.|+++|+++++|+.|+.+.+|....       +           +.+..+.+ |...|..++|+|++.++
T Consensus        66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~l  144 (942)
T KOG0973|consen   66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLL  144 (942)
T ss_pred             ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccEE
Confidence            35889999999999999999999999999998762       0           13445666 89999999999999988


Q ss_pred             eC
Q psy7061          64 LT   65 (65)
Q Consensus        64 ~s   65 (65)
                      ++
T Consensus       145 vS  146 (942)
T KOG0973|consen  145 VS  146 (942)
T ss_pred             EE
Confidence            75

>KOG0316|consensus

Probab=99.16  E-value=3e-10  Score=51.47  Aligned_cols=63  Identities=17%  Similarity=0.274  Sum_probs=57.2

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...|..+..+.+..++++++.|..+.+|+..+++..+.+.+ |...|+.++|+.+...+++
T Consensus        56 sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rg-H~aqVNtV~fNeesSVv~S  118 (307)
T KOG0316|consen   56 SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRG-HLAQVNTVRFNEESSVVAS  118 (307)
T ss_pred             cCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeeccc-ccceeeEEEecCcceEEEe
Confidence            46778899998888888999999999999999999999999999 9999999999998877764

>KOG0296|consensus

Probab=99.16  E-value=5.3e-10  Score=52.90  Aligned_cols=61  Identities=18%  Similarity=0.193  Sum_probs=55.9

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .|...|..+.|-+ ...++++..++.|+.|+.+++.....+.+ |...|.+++++|+.+.++|
T Consensus       325 ~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G-H~~~Il~f~ls~~~~~vvT  385 (399)
T KOG0296|consen  325 EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG-HQMGILDFALSPQKRLVVT  385 (399)
T ss_pred             cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec-CchheeEEEEcCCCcEEEE
Confidence            3677899999988 77888899999999999999999999999 9999999999999999875

>KOG0643|consensus

Probab=99.16  E-value=1.1e-09  Score=50.39  Aligned_cols=64  Identities=20%  Similarity=0.309  Sum_probs=59.0

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |++|..+++.+.|..+|.++.+++.|....+|-..+++.+.++.+ |.+.|+++..+-+.+.++|
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~G-HtGavW~~Did~~s~~liT   69 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDG-HTGAVWCCDIDWDSKHLIT   69 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecC-CCceEEEEEecCCcceeee
Confidence            578999999999999999999999999999999889999999999 9999999998888777664

>KOG0269|consensus

Probab=99.15  E-value=2.8e-10  Score=57.79  Aligned_cols=61  Identities=20%  Similarity=0.229  Sum_probs=48.1

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcE
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF   62 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   62 (65)
                      ..|.+.|.++.|+|++.+|++|+.|+.+++|+..+.+......-..-..+..++|-|.-.+
T Consensus       217 ~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~  277 (839)
T KOG0269|consen  217 TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY  277 (839)
T ss_pred             hcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence            5799999999999999999999999999999988654322222114678899999987543

>KOG0292|consensus

Probab=99.15  E-value=1.8e-10  Score=59.59  Aligned_cols=63  Identities=17%  Similarity=0.256  Sum_probs=58.6

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|.++|..+.|+|.+..+++++.|..+++|+.+..+++.++.+ |-+-|..+.|++...+|+|
T Consensus        48 deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~G-HlDYVRt~~FHheyPWIlS  110 (1202)
T KOG0292|consen   48 DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLG-HLDYVRTVFFHHEYPWILS  110 (1202)
T ss_pred             hccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcc-ccceeEEeeccCCCceEEE
Confidence            36899999999999999999999999999999999999999999 9999999999999888864

>KOG0313|consensus

Probab=99.15  E-value=3e-10  Score=53.94  Aligned_cols=59  Identities=15%  Similarity=0.302  Sum_probs=51.7

Q ss_pred             CCccccceEEEEECCCC-CEEEEecCCCcEEEEECCCCc-eEEEeeccCCCcEeEEEEccCC
Q psy7061           1 MAAHRAYGLHCVFSPDC-RLLATTSADQTARIWNTEDFS-LVRELGTANQRWVWDAAFTLDS   60 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~   60 (65)
                      |.+|++.|..+.|+|.. .++++++.|+.+++||.++.. +++.+.+ |...|.++.|+..+
T Consensus       341 ~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~-h~DKvl~vdW~~~~  401 (423)
T KOG0313|consen  341 LIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG-HNDKVLSVDWNEGG  401 (423)
T ss_pred             eecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc-CCceEEEEeccCCc
Confidence            45799999999999955 578999999999999999877 8888888 89999999997653

>KOG0276|consensus

Probab=99.15  E-value=6.6e-11  Score=59.13  Aligned_cols=64  Identities=16%  Similarity=0.182  Sum_probs=57.5

Q ss_pred             CCccccceEEEEECCCC--CEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDC--RLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |++|...|.+++|.+.+  +++++++.|..+++||.++..++.++.+ |...|..+.|+|.-..|+|
T Consensus       179 l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG-Ht~Nvs~v~fhp~lpiiis  244 (794)
T KOG0276|consen  179 LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG-HTNNVSFVFFHPELPIIIS  244 (794)
T ss_pred             eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc-ccccceEEEecCCCcEEEE
Confidence            56899999999998854  5899999999999999999999999999 9999999999998777764

>KOG0316|consensus

Probab=99.15  E-value=7.6e-10  Score=50.22  Aligned_cols=63  Identities=21%  Similarity=0.273  Sum_probs=55.5

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      |..+++.|..+.|.-+|++.++++.+..+++|+...+..+.++.+ |..+|..++.+.+...++
T Consensus        13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-hG~EVlD~~~s~Dnskf~   75 (307)
T KOG0316|consen   13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-HGHEVLDAALSSDNSKFA   75 (307)
T ss_pred             ecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecC-CCceeeeccccccccccc
Confidence            346788999999999999999999999999999999999999999 899999888777655544

>KOG1063|consensus

Probab=99.14  E-value=2.9e-10  Score=57.22  Aligned_cols=64  Identities=27%  Similarity=0.470  Sum_probs=52.8

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCc----eEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFS----LVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |.+|+-.|+.+.|+|+++++++.+.|+.+.+|......    ....... |..-|+...|+|++++++|
T Consensus       568 L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~-HtRIIWdcsW~pde~~FaT  635 (764)
T KOG1063|consen  568 LEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKA-HTRIIWDCSWSPDEKYFAT  635 (764)
T ss_pred             ecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccc-cceEEEEcccCcccceeEE
Confidence            56799999999999999999999999999999875322    1222344 8999999999999998764

>KOG0265|consensus

Probab=99.14  E-value=6e-10  Score=51.70  Aligned_cols=54  Identities=17%  Similarity=0.191  Sum_probs=49.2

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEE
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAA   55 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   55 (65)
                      +++|.+.|..+.|.++++.+++++.|..++.||..+++.++.... |..-|+.+.
T Consensus        86 lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~-h~~~vNs~~  139 (338)
T KOG0265|consen   86 LKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKG-HTSFVNSLD  139 (338)
T ss_pred             eccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcc-ccceeeecC
Confidence            468999999999999999999999999999999999999999888 777777665

>KOG0306|consensus

Probab=99.13  E-value=3.5e-10  Score=57.49  Aligned_cols=63  Identities=22%  Similarity=0.339  Sum_probs=57.4

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      |.||.-+|.+++.+|+++.+++++.|..|++|.++=|.+-.++.. |.+.|.++.|-|....++
T Consensus       546 LYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA-HdDSvm~V~F~P~~~~FF  608 (888)
T KOG0306|consen  546 LYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA-HDDSVMSVQFLPKTHLFF  608 (888)
T ss_pred             ecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc-ccCceeEEEEcccceeEE
Confidence            468999999999999999999999999999999998998888888 999999999999766554

>KOG1063|consensus

Probab=99.12  E-value=5.9e-10  Score=56.17  Aligned_cols=64  Identities=28%  Similarity=0.426  Sum_probs=54.1

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCC-----cEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQ-----TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |.||...|++++.+|+++.++++....     .+++|+..+=.....+.. |.-.|..++|||+++++++
T Consensus       521 LYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~-HsLTVT~l~FSpdg~~LLs  589 (764)
T KOG1063|consen  521 LYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG-HSLTVTRLAFSPDGRYLLS  589 (764)
T ss_pred             hccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc-cceEEEEEEECCCCcEEEE
Confidence            458999999999999999998876533     488999887666667788 9999999999999999975

>KOG0278|consensus

Probab=99.12  E-value=8.1e-10  Score=50.53  Aligned_cols=59  Identities=8%  Similarity=0.049  Sum_probs=51.7

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .|.+...+|+...++.++++..++.||..++..+.....+|..+|.++.|+|+|..+++
T Consensus       226 nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAs  284 (334)
T KOG0278|consen  226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYAS  284 (334)
T ss_pred             ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeec
Confidence            57778889988889999999999999999999999874348999999999999987764

>KOG0302|consensus

Probab=99.12  E-value=1.2e-09  Score=52.06  Aligned_cols=61  Identities=16%  Similarity=0.129  Sum_probs=52.1

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECC---CCceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTE---DFSLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      +.|.++|..++|+..-.++++|+.+|.+++|+++   .+..+..+.. |...|.++.|+|....+
T Consensus       299 kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~-Hk~pItsieW~p~e~s~  362 (440)
T KOG0302|consen  299 KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY-HKAPITSIEWHPHEDSV  362 (440)
T ss_pred             eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe-ccCCeeEEEeccccCce
Confidence            4588899999999876789999999999999998   3567788888 99999999999965443

>KOG0308|consensus

Probab=99.11  E-value=1.5e-09  Score=54.52  Aligned_cols=63  Identities=16%  Similarity=0.212  Sum_probs=57.1

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      |+||+..|..+..+.+|..+++++.|+.+++|++...+++.++.. |...|+.+..+|+-+.+.
T Consensus       209 LrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v-H~e~VWaL~~~~sf~~vY  271 (735)
T KOG0308|consen  209 LRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV-HKEGVWALQSSPSFTHVY  271 (735)
T ss_pred             eeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe-ccCceEEEeeCCCcceEE
Confidence            568999999999999999999999999999999999999999998 899999999988765554

>KOG0277|consensus

Probab=99.11  E-value=6e-10  Score=50.89  Aligned_cols=60  Identities=18%  Similarity=0.295  Sum_probs=52.8

Q ss_pred             CccccceEEEEECCC-CCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcE
Q psy7061           2 AAHRAYGLHCVFSPD-CRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF   62 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   62 (65)
                      ++|...|.+++|.+. .+.+++++.|+.+++|+..-+..+.++.+ |+..|...+|+|....
T Consensus       101 kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g-h~~~Iy~a~~sp~~~n  161 (311)
T KOG0277|consen  101 KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG-HNSCIYQAAFSPHIPN  161 (311)
T ss_pred             HhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC-CccEEEEEecCCCCCC
Confidence            578999999999984 56678889999999999999999999999 9999999999996443

>KOG0772|consensus

Probab=99.10  E-value=1.4e-10  Score=56.95  Aligned_cols=63  Identities=25%  Similarity=0.286  Sum_probs=49.0

Q ss_pred             cccc--ceEEEEECCCCCEEEEecCCCcEEEEECCCC-ceEEEeec-cCCCcEeEEEEccCCcEEeC
Q psy7061           3 AHRA--YGLHCVFSPDCRLLATTSADQTARIWNTEDF-SLVRELGT-ANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .|..  .|+++.|+++|+.|++.+.|..+++|+++.. +++....+ .....-..++|+|+.+.|++
T Consensus       360 AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~T  426 (641)
T KOG0772|consen  360 AHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILT  426 (641)
T ss_pred             ccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEe
Confidence            4666  8999999999999999999999999999854 33333332 23455578899999998875

>KOG0322|consensus

Probab=99.09  E-value=3.2e-10  Score=51.98  Aligned_cols=57  Identities=21%  Similarity=0.237  Sum_probs=51.2

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+..+..-||++.+++++.|+++++|..++...+..+.. |+..|++++|+|+...++
T Consensus       253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky-Hsagvn~vAfspd~~lmA  309 (323)
T KOG0322|consen  253 GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY-HSAGVNAVAFSPDCELMA  309 (323)
T ss_pred             CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh-hhcceeEEEeCCCCchhh
Confidence            466788899999999999999999999999999999999 999999999999965544

>KOG1009|consensus

Probab=99.09  E-value=1.6e-10  Score=55.13  Aligned_cols=63  Identities=22%  Similarity=0.423  Sum_probs=57.4

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|..+++.+.|+|+++.+++++.+..+++|+...+.....+.. |..-+..++|.|..+++++
T Consensus       120 r~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d-h~~yvqgvawDpl~qyv~s  182 (434)
T KOG1009|consen  120 RGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD-HEHYVQGVAWDPLNQYVAS  182 (434)
T ss_pred             cccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccc-cccccceeecchhhhhhhh
Confidence            46888999999999999999999999999999999999888888 9999999999998877653

>KOG1274|consensus

Probab=99.08  E-value=1.2e-09  Score=56.38  Aligned_cols=63  Identities=25%  Similarity=0.336  Sum_probs=51.5

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeecc-------CCCcEeEEEEccCCcEE
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTA-------NQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~i   63 (65)
                      +++|.+.|.+++|+|+++.+++...+|.|++|+++++....++.+-       ....+..++|+|++-.+
T Consensus       134 lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~l  203 (933)
T KOG1274|consen  134 LRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTL  203 (933)
T ss_pred             ecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeE
Confidence            4689999999999999999999999999999999988776655430       14566789999995444

>KOG1446|consensus

Probab=99.08  E-value=2.4e-09  Score=49.76  Aligned_cols=61  Identities=20%  Similarity=0.164  Sum_probs=48.3

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +.||...|..++.+|.+..+++++.|..+++||++..++...+..   ......+|.|+|-.++
T Consensus        96 F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~---~~~pi~AfDp~GLifA  156 (311)
T KOG1446|consen   96 FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL---SGRPIAAFDPEGLIFA  156 (311)
T ss_pred             cCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec---CCCcceeECCCCcEEE
Confidence            368999999999999889999999999999999998777666654   2234456677776554

>KOG0306|consensus

Probab=99.07  E-value=9.8e-10  Score=55.98  Aligned_cols=62  Identities=24%  Similarity=0.471  Sum_probs=57.7

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +|...|.++.|.|+...+.+++.|+.++.||...-+.+..+.+ |...|++++.+|+|.+++|
T Consensus       590 AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~-H~~ev~cLav~~~G~~vvs  651 (888)
T KOG0306|consen  590 AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDG-HHSEVWCLAVSPNGSFVVS  651 (888)
T ss_pred             cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeecc-chheeeeeEEcCCCCeEEe
Confidence            5888999999999989999999999999999999999999999 8999999999999988875

>KOG1446|consensus

Probab=99.07  E-value=2.4e-09  Score=49.73  Aligned_cols=57  Identities=26%  Similarity=0.357  Sum_probs=49.8

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           9 LHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ....|.|+++.+++++.|+.+.+|++.++..+..+.+.+...+.++.|+|.....+|
T Consensus       236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~s  292 (311)
T KOG1446|consen  236 LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVS  292 (311)
T ss_pred             eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeee
Confidence            567899999999999999999999999999988888745788899999998766553

>KOG2096|consensus

Probab=99.07  E-value=1.4e-09  Score=51.17  Aligned_cols=61  Identities=28%  Similarity=0.426  Sum_probs=46.4

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCC-----ceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDF-----SLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      |++|...|++++|+.+|+.+++++.|+.+++|++++-     +.++...  ..+.-..+.|.||.+-+
T Consensus        82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv--e~dhpT~V~FapDc~s~  147 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV--EYDHPTRVVFAPDCKSV  147 (420)
T ss_pred             hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc--cCCCceEEEECCCcceE
Confidence            5789999999999999999999999999999998852     2222222  23455677788876654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.06  E-value=8.4e-09  Score=53.26  Aligned_cols=61  Identities=20%  Similarity=0.255  Sum_probs=50.2

Q ss_pred             CccccceEEEEECC-CCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEc-cCCcEEe
Q psy7061           2 AAHRAYGLHCVFSP-DCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFT-LDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~i~   64 (65)
                      .+|...|.++.|+| ++..+++++.|+.+++|++..+..+..+..  ...+.++.|+ +++..++
T Consensus       572 ~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~--~~~v~~v~~~~~~g~~la  634 (793)
T PLN00181        572 KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT--KANICCVQFPSESGRSLA  634 (793)
T ss_pred             cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec--CCCeEEEEEeCCCCCEEE
Confidence            46888999999997 678999999999999999998888777764  3578888885 4566665

>KOG1310|consensus

Probab=99.06  E-value=2e-09  Score=53.63  Aligned_cols=59  Identities=19%  Similarity=0.354  Sum_probs=53.8

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD   59 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   59 (65)
                      |.||++=|.+++|..+|.++++|+.|-.+.+|+....+.+..+..+|...|.+++|-|.
T Consensus        46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~  104 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPY  104 (758)
T ss_pred             hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeecc
Confidence            57899999999999999999999999999999999888888887668999999999874

>KOG0303|consensus

Probab=99.06  E-value=7.2e-10  Score=53.09  Aligned_cols=63  Identities=22%  Similarity=0.336  Sum_probs=56.0

Q ss_pred             CCccccceEEEEECCC-CCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPD-CRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |.+|+..|-.+.|+|. .+.+++++.|..+.+|+..+++....+.  |...|.++.|+-+|.+++|
T Consensus       127 L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~T  190 (472)
T KOG0303|consen  127 LYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCT  190 (472)
T ss_pred             EeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC--CCCeEEEEEeccCCceeee
Confidence            5689999999999995 5788999999999999999999877766  8999999999999998875

>KOG0268|consensus

Probab=99.05  E-value=5e-10  Score=53.12  Aligned_cols=64  Identities=20%  Similarity=0.305  Sum_probs=53.8

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ++|.+.|..++|+|.|+-+++++.|..+++|....+..........=..|.++.|+.|.++|+|
T Consensus       269 ~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~S  332 (433)
T KOG0268|consen  269 KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIIS  332 (433)
T ss_pred             cccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEe
Confidence            4688899999999999999999999999999998776655554423367999999999999975

>KOG1408|consensus

Probab=99.03  E-value=1.5e-09  Score=55.49  Aligned_cols=62  Identities=21%  Similarity=0.304  Sum_probs=53.7

Q ss_pred             ccccceEEEEECCCCCEEEEecC--CCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSA--DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+...+++++|+++|+++++|-.  .-.+++|++.....+..+.. |+..+.+++|+|.++++++
T Consensus        76 ssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvd-HKY~vtcvaFsp~~kyvvS  139 (1080)
T KOG1408|consen   76 SSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVD-HKYNVTCVAFSPGNKYVVS  139 (1080)
T ss_pred             ccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhh-ccccceeeeecCCCcEEEe
Confidence            45668999999999999998763  44689999998888888998 9999999999999999874

>KOG0299|consensus

Probab=99.03  E-value=2.7e-09  Score=51.74  Aligned_cols=57  Identities=25%  Similarity=0.326  Sum_probs=51.7

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS   60 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   60 (65)
                      +|...+.++..++++++++++..+..+.+|+.++.+.+..+.+ |++.|.+++|-...
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~g-hr~~V~~L~fr~gt  256 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKG-HRGAVSSLAFRKGT  256 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccc-cccceeeeeeecCc
Confidence            5777899999999999999999999999999999999999998 99999999986543

>KOG0275|consensus

Probab=99.02  E-value=3.2e-10  Score=53.46  Aligned_cols=62  Identities=27%  Similarity=0.311  Sum_probs=58.2

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .|+..|+++.|+.++..+++++.|..+++..+.+++.+..+.+ |..-|+...|+++|..|++
T Consensus       304 AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG-HsSyvn~a~ft~dG~~iis  365 (508)
T KOG0275|consen  304 AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRG-HSSYVNEATFTDDGHHIIS  365 (508)
T ss_pred             hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcC-ccccccceEEcCCCCeEEE
Confidence            5888999999999999999999999999999999999999999 9999999999999998874

>KOG2096|consensus

Probab=99.02  E-value=2.1e-09  Score=50.60  Aligned_cols=35  Identities=31%  Similarity=0.477  Sum_probs=32.8

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTE   35 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~   35 (65)
                      |++|+..|..++|++++..+++.+.||..++|+.+
T Consensus       274 LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  274 LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             eccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            67999999999999999999999999999999876

>KOG0303|consensus

Probab=99.01  E-value=1.4e-09  Score=52.13  Aligned_cols=61  Identities=23%  Similarity=0.247  Sum_probs=50.8

Q ss_pred             CccccceEEEEECC-CCCEEEEecCCCcEEEEECCCC-------ceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061           2 AAHRAYGLHCVFSP-DCRLLATTSADQTARIWNTEDF-------SLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         2 ~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      .+|++.+..++|+| +.+.+++|++|..+.+|.+...       ..+..+.+ |...|-.++|+|....+
T Consensus        78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NV  146 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNV  146 (472)
T ss_pred             cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhh
Confidence            47999999999999 5688999999999999998743       34556667 99999999999975543

>KOG0300|consensus

Probab=99.01  E-value=3.1e-09  Score=50.17  Aligned_cols=64  Identities=27%  Similarity=0.289  Sum_probs=56.4

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +.+|...|..+......+.+.+++.|+.-++|.+.++.++.++.+ |.+.|++++|++.+..+++
T Consensus       144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~G-H~GSVNsikfh~s~~L~lT  207 (481)
T KOG0300|consen  144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTG-HTGSVNSIKFHNSGLLLLT  207 (481)
T ss_pred             hcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecc-cccceeeEEeccccceEEE
Confidence            357888888888776667888899999999999999999999999 9999999999999888764

>KOG1407|consensus

Probab=99.00  E-value=8.4e-09  Score=47.43  Aligned_cols=61  Identities=21%  Similarity=0.329  Sum_probs=51.3

Q ss_pred             CccccceEEEEECCC-CCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPD-CRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+|...+-.+.|+|. ...+++++.+..+++|+++.++++.....  +.+-..+.|+|++.+++
T Consensus        61 ~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~--~~eni~i~wsp~g~~~~  122 (313)
T KOG1407|consen   61 RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET--KGENINITWSPDGEYIA  122 (313)
T ss_pred             cCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec--cCcceEEEEcCCCCEEE
Confidence            568888999999885 56889999999999999999999887775  55567788999998875

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.00  E-value=1.4e-08  Score=52.45  Aligned_cols=59  Identities=15%  Similarity=0.349  Sum_probs=49.8

Q ss_pred             cceEEEEECC-CCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEcc-CCcEEeC
Q psy7061           6 AYGLHCVFSP-DCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL-DSKFLLT   65 (65)
Q Consensus         6 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~i~s   65 (65)
                      ..+..+.|++ .+..+++++.++.+++|++.++..+..+.. |...|.+++|+| ++..++|
T Consensus       533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~-H~~~V~~l~~~p~~~~~L~S  593 (793)
T PLN00181        533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKE-HEKRVWSIDYSSADPTLLAS  593 (793)
T ss_pred             CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecC-CCCCEEEEEEcCCCCCEEEE
Confidence            4577888887 467899999999999999998888888888 899999999997 6777653

>KOG0282|consensus

Probab=99.00  E-value=3e-09  Score=51.82  Aligned_cols=54  Identities=22%  Similarity=0.359  Sum_probs=49.2

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCc
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK   61 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   61 (65)
                      .-+.+.|+|||..+++|..+|.+.+|+-++.+.+..+.. |...+..+.|+|...
T Consensus       434 ys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka-h~~~ci~v~wHP~e~  487 (503)
T KOG0282|consen  434 YSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA-HDQPCIGVDWHPVEP  487 (503)
T ss_pred             ceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc-CCcceEEEEecCCCc
Confidence            466789999999999999999999999999999999998 899999999999643

>KOG1007|consensus

Probab=99.00  E-value=3.5e-09  Score=49.31  Aligned_cols=61  Identities=31%  Similarity=0.545  Sum_probs=49.9

Q ss_pred             ccccceEEEEECCCCC-EEEEecCCCcEEEEECCCC-ceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           3 AHRAYGLHCVFSPDCR-LLATTSADQTARIWNTEDF-SLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .|...+..++|.|+.+ .+++++.++.+++||.+.. .++..+.+ |...|+++.|+|....++
T Consensus       212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~-HsHWvW~VRfn~~hdqLi  274 (370)
T KOG1007|consen  212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG-HSHWVWAVRFNPEHDQLI  274 (370)
T ss_pred             hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC-CceEEEEEEecCccceEE
Confidence            3666788999999765 5789999999999999854 45666777 999999999999876654

>KOG1009|consensus

Probab=99.00  E-value=3.7e-09  Score=50.69  Aligned_cols=64  Identities=25%  Similarity=0.371  Sum_probs=51.2

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECC--------C-----C--c-eEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTE--------D-----F--S-LVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-----~--~-~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      |..|...|..+.|+|+|..+++++.++.+.+|...        +     .  . ....+.+ |...+..++|+|++.+++
T Consensus        61 Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~  139 (434)
T KOG1009|consen   61 LSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLV  139 (434)
T ss_pred             ccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecc-cccchhhhhccCCCceee
Confidence            45688999999999999999999999999999765        1     1  1 1223334 889999999999998876


Q ss_pred             C
Q psy7061          65 T   65 (65)
Q Consensus        65 s   65 (65)
                      +
T Consensus       140 s  140 (434)
T KOG1009|consen  140 S  140 (434)
T ss_pred             e
Confidence            4

>KOG0640|consensus

Probab=98.99  E-value=7.4e-10  Score=51.94  Aligned_cols=61  Identities=20%  Similarity=0.247  Sum_probs=50.2

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCC---ceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDF---SLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..|...|..+.|+|....+++++.|+.+++||+...   +....+.  ....|.++.|+|.|.+++
T Consensus       169 YDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q--d~~~vrsiSfHPsGefll  232 (430)
T KOG0640|consen  169 YDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ--DTEPVRSISFHPSGEFLL  232 (430)
T ss_pred             hhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh--ccceeeeEeecCCCceEE
Confidence            458889999999999999999999999999999743   2333344  467899999999999875

>KOG0264|consensus

Probab=98.99  E-value=5.2e-09  Score=50.43  Aligned_cols=64  Identities=14%  Similarity=0.270  Sum_probs=49.6

Q ss_pred             CCccccceEEEEECCCC-CEEEEecCCCcEEEEECCCCceE-------------EEeeccCCCcEeEEEEccCCcEEe
Q psy7061           1 MAAHRAYGLHCVFSPDC-RLLATTSADQTARIWNTEDFSLV-------------RELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +.+|...|..+.|+|.. ..+++++.|+.+.+||+......             .-..++|...|..+.|+|+..+.+
T Consensus       312 ~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I  389 (422)
T KOG0264|consen  312 FEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTI  389 (422)
T ss_pred             ccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEE
Confidence            45789999999999964 67899999999999998732211             122335889999999999877665

>KOG0974|consensus

Probab=98.99  E-value=5.4e-09  Score=54.46  Aligned_cols=58  Identities=22%  Similarity=0.366  Sum_probs=51.6

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEE-EeeccCCCcEeEEEEccC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVR-ELGTANQRWVWDAAFTLD   59 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~   59 (65)
                      +.+|.+.++.+.++.+|.++++.+.|..+++|.+++.+... ...+ |..+++.+++.|+
T Consensus       171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg-HsaRvw~~~~~~n  229 (967)
T KOG0974|consen  171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG-HSARVWACCFLPN  229 (967)
T ss_pred             ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc-ccceeEEEEeccc
Confidence            46899999999999999999999999999999999877665 3444 8999999999998

>KOG0302|consensus

Probab=98.98  E-value=4.2e-09  Score=50.32  Aligned_cols=63  Identities=17%  Similarity=0.195  Sum_probs=50.5

Q ss_pred             CccccceEEEEECCC-CCEEEEecCCCcEEEEECCCCc--eEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPD-CRLLATTSADQTARIWNTEDFS--LVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|+..|..+.|+|. ...+++++.|+.+++|+++.+.  ....... |...|+.+.|+....+|++
T Consensus       254 ~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kA-h~sDVNVISWnr~~~lLas  319 (440)
T KOG0302|consen  254 TGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKA-HNSDVNVISWNRREPLLAS  319 (440)
T ss_pred             cccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeec-cCCceeeEEccCCcceeee
Confidence            468889999999995 4688999999999999999762  2223344 8889999999988776653

>KOG0281|consensus

Probab=98.97  E-value=2.2e-09  Score=51.12  Aligned_cols=56  Identities=20%  Similarity=0.296  Sum_probs=49.2

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD   59 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   59 (65)
                      |.||++.|.++.|+  .+.+++|+.|..+++|+..+++++.++.. |...|..+.|+..
T Consensus       233 L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlih-HceaVLhlrf~ng  288 (499)
T KOG0281|consen  233 LTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIH-HCEAVLHLRFSNG  288 (499)
T ss_pred             hhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhh-hcceeEEEEEeCC
Confidence            56899999999995  46899999999999999999999998888 8888888887654

>KOG1538|consensus

Probab=98.97  E-value=1.6e-09  Score=55.18  Aligned_cols=60  Identities=18%  Similarity=0.237  Sum_probs=45.6

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      |++|...|.+++|+.+|+.+++|+.|..|.+|..+-..   .+...|.+.+.++.|+|....+
T Consensus        49 LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---~LkYSH~D~IQCMsFNP~~h~L  108 (1081)
T KOG1538|consen   49 LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---ILKYSHNDAIQCMSFNPITHQL  108 (1081)
T ss_pred             cccccceEEEEEEccCCceeccCCCceeEEEecccccc---eeeeccCCeeeEeecCchHHHh
Confidence            57899999999999999999999999999999865222   2222266667777777655444

>KOG0269|consensus

Probab=98.97  E-value=2e-09  Score=54.89  Aligned_cols=61  Identities=15%  Similarity=0.163  Sum_probs=51.5

Q ss_pred             cccceEEEEECC-CCCEEEEecCCCcEEEEECCC-CceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           4 HRAYGLHCVFSP-DCRLLATTSADQTARIWNTED-FSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         4 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ....|..+.|+| .+..++++...|.+++||++- .+...++.. |.+.|.++-|+|++.+|+|
T Consensus       175 nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A-H~GpV~c~nwhPnr~~lAT  237 (839)
T KOG0269|consen  175 NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA-HNGPVLCLNWHPNREWLAT  237 (839)
T ss_pred             cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc-ccCceEEEeecCCCceeee
Confidence            345688899999 467899999999999999984 455666677 9999999999999999986

>KOG0267|consensus

Probab=98.96  E-value=2.5e-09  Score=54.33  Aligned_cols=64  Identities=17%  Similarity=0.261  Sum_probs=58.3

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |.+|...+..+.|+|-+.+.++++.+...++||.+...+...+.+ |...+..++|+|+|+++++
T Consensus       108 Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s-~~~vv~~l~lsP~Gr~v~~  171 (825)
T KOG0267|consen  108 LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS-HTRVVDVLRLSPDGRWVAS  171 (825)
T ss_pred             hhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC-CcceeEEEeecCCCceeec
Confidence            457888999999999999999999999999999998888888988 8999999999999998763

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.95  E-value=2.8e-08  Score=44.04  Aligned_cols=57  Identities=14%  Similarity=0.189  Sum_probs=42.8

Q ss_pred             ccceEEEEECCCCCEEEE--ecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           5 RAYGLHCVFSPDCRLLAT--TSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         5 ~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+.|..+.|+|+++.++.  +.....+.+|+++ .+.+..+.   ...+..+.|+|+|+++++
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~---~~~~n~i~wsP~G~~l~~  117 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG---TQPRNTISWSPDGRFLVL  117 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec---CCCceEEEECCCCCEEEE
Confidence            346999999999987543  4456789999997 55555544   356678999999999873

>KOG0267|consensus

Probab=98.95  E-value=4.8e-10  Score=56.77  Aligned_cols=63  Identities=25%  Similarity=0.356  Sum_probs=57.0

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      |.+|...|-++.|++....++.+..++.+++||+..++.++++.+ |...+..+.|+|-+.+.+
T Consensus        66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtg-h~~~~~sv~f~P~~~~~a  128 (825)
T KOG0267|consen   66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTG-HLLNITSVDFHPYGEFFA  128 (825)
T ss_pred             eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhc-cccCcceeeeccceEEec
Confidence            467899999999999888999999999999999999999999998 899999999999887653

>KOG0281|consensus

Probab=98.94  E-value=2.1e-09  Score=51.13  Aligned_cols=59  Identities=22%  Similarity=0.419  Sum_probs=48.8

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      |.||...|..++|+  .+++++++.|..+++|++.++..++.+.+ |..++.+++|  .+++++
T Consensus       316 LvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~g-HkRGIAClQY--r~rlvV  374 (499)
T KOG0281|consen  316 LVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNG-HKRGIACLQY--RDRLVV  374 (499)
T ss_pred             Hhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhc-ccccceehhc--cCeEEE
Confidence            45788889999885  56899999999999999999999999998 8888888776  444444

>KOG0772|consensus

Probab=98.94  E-value=3.8e-09  Score=52.20  Aligned_cols=60  Identities=22%  Similarity=0.389  Sum_probs=46.6

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCC--ceEEEeeccCCC--cEeEEEEccCCcEEeC
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDF--SLVRELGTANQR--WVWDAAFTLDSKFLLT   65 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~v~~~~~~~~~~~i~s   65 (65)
                      -.++.+.|++++++++.+..||.+.+|+....  +........|..  .+.++.|+++|++++|
T Consensus       318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlS  381 (641)
T KOG0772|consen  318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLS  381 (641)
T ss_pred             cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhh
Confidence            35788999999999999999999999997532  222222223554  8999999999999875

>KOG0276|consensus

Probab=98.93  E-value=9.6e-09  Score=51.85  Aligned_cols=63  Identities=24%  Similarity=0.419  Sum_probs=53.0

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      |+||...|..+.|+|.-..+++|++|+.+++|+..+.+...++.. .-.++++++-.+....++
T Consensus       223 LeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~-gleRvW~I~~~k~~~~i~  285 (794)
T KOG0276|consen  223 LEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY-GLERVWCIAAHKGDGKIA  285 (794)
T ss_pred             hhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc-CCceEEEEeecCCCCeEE
Confidence            568999999999999999999999999999999988877777776 567888888777655543

>KOG0646|consensus

Probab=98.92  E-value=4.2e-09  Score=51.12  Aligned_cols=59  Identities=14%  Similarity=0.072  Sum_probs=53.7

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +.+.++.-+|.|.+++.+...+.+++|.+.+|..+..+.. |...+.++.|+-|+..++|
T Consensus        82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a-HYQ~ITcL~fs~dgs~iiT  140 (476)
T KOG0646|consen   82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSA-HYQSITCLKFSDDGSHIIT  140 (476)
T ss_pred             cceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHh-hccceeEEEEeCCCcEEEe
Confidence            4577888889999999888999999999999999988887 9999999999999999875

>KOG0313|consensus

Probab=98.90  E-value=2.2e-08  Score=47.96  Aligned_cols=62  Identities=23%  Similarity=0.291  Sum_probs=53.3

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |.+|+..|..+.|++ ...+.+++.|+.++.||+..+..+..+..  .....++.++|..+.|++
T Consensus       256 l~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~--~ksl~~i~~~~~~~Ll~~  317 (423)
T KOG0313|consen  256 LEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT--NKSLNCISYSPLSKLLAS  317 (423)
T ss_pred             ecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec--CcceeEeecccccceeee
Confidence            568999999999998 55688999999999999999988877774  677889999988877764

>KOG0647|consensus

Probab=98.90  E-value=5.2e-08  Score=45.65  Aligned_cols=57  Identities=14%  Similarity=0.228  Sum_probs=48.5

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCc
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK   61 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   61 (65)
                      .|.+++.++.|+.+|.++++++.|+.+++|++.++... +... |...|..+.|-+...
T Consensus        70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~-~v~~-Hd~pvkt~~wv~~~~  126 (347)
T KOG0647|consen   70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS-QVAA-HDAPVKTCHWVPGMN  126 (347)
T ss_pred             ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee-eeee-cccceeEEEEecCCC
Confidence            47889999999999999999999999999999988543 5555 899999999866543

>KOG1524|consensus

Probab=98.89  E-value=7.8e-09  Score=51.51  Aligned_cols=57  Identities=18%  Similarity=0.277  Sum_probs=43.9

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS   60 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   60 (65)
                      +.|.+-|.+++|++.+..++++++|-..++||.... .+.+... |...+.+++|+|+.
T Consensus       183 kAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-~Lf~S~~-~ey~ITSva~npd~  239 (737)
T KOG1524|consen  183 RAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-NLFTSAA-EEYAITSVAFNPEK  239 (737)
T ss_pred             eccCcEEEEeecCccccceeecCCceeEEeecccCc-ccccCCh-hccceeeeeecccc
Confidence            468889999999999999999999999999997643 3333333 56666666666663

>KOG0646|consensus

Probab=98.89  E-value=4.1e-09  Score=51.16  Aligned_cols=57  Identities=19%  Similarity=0.170  Sum_probs=49.2

Q ss_pred             Ccccc--ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccC
Q psy7061           2 AAHRA--YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD   59 (65)
Q Consensus         2 ~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   59 (65)
                      .+|.+  .|++++++.|+..+++|+.|+.+++|++.+..+++++.. ..+.|+.+++.|-
T Consensus       272 ~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~-~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  272 VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT-SKGPVTNLQINPL  330 (476)
T ss_pred             ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh-hccccceeEeecc
Confidence            46777  899999999999999999999999999999988888875 5677887777553

>KOG0771|consensus

Probab=98.88  E-value=5e-09  Score=50.16  Aligned_cols=56  Identities=30%  Similarity=0.349  Sum_probs=46.8

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           9 LHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ..++|..++..+++++.|+.+++|+-.....+..... |...|.++.|+||++.+++
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~-~~~eV~DL~FS~dgk~las  203 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIA-HHAEVKDLDFSPDGKFLAS  203 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHh-hcCccccceeCCCCcEEEE
Confidence            4678889999999999999999999655555545555 8899999999999999874

>KOG0270|consensus

Probab=98.88  E-value=3.8e-09  Score=51.08  Aligned_cols=58  Identities=17%  Similarity=0.236  Sum_probs=49.7

Q ss_pred             ccccceEEEEECCC-CCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCc
Q psy7061           3 AHRAYGLHCVFSPD-CRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK   61 (65)
Q Consensus         3 ~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   61 (65)
                      +|+..|..+.|... .+.+++++.|..|.+|++.++++...+.. |...|.+++|+|..-
T Consensus       241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~-~~k~Vq~l~wh~~~p  299 (463)
T KOG0270|consen  241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH-HGKKVQTLEWHPYEP  299 (463)
T ss_pred             cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh-cCCceeEEEecCCCc
Confidence            57777888888775 46789999999999999999999888887 899999999998643

>KOG0308|consensus

Probab=98.88  E-value=3.7e-08  Score=49.85  Aligned_cols=62  Identities=11%  Similarity=0.174  Sum_probs=56.8

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ++...+++++..+.+..+++|+..+.+++|+.++...+..+.+ |...|..+..+.+|+.++|
T Consensus       169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrG-HTdNVr~ll~~dDGt~~ls  230 (735)
T KOG0308|consen  169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRG-HTDNVRVLLVNDDGTRLLS  230 (735)
T ss_pred             CCccceeeeecCCcceEEEecCcccceEEeccccccceeeeec-cccceEEEEEcCCCCeEee
Confidence            5677899999999888999999999999999999999999998 9999999999999988865

>KOG0647|consensus

Probab=98.88  E-value=1.6e-08  Score=47.26  Aligned_cols=60  Identities=28%  Similarity=0.336  Sum_probs=46.5

Q ss_pred             cceEEEEECCC-CCEEEEecCCCcEEEEECCC-CceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           6 AYGLHCVFSPD-CRLLATTSADQTARIWNTED-FSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         6 ~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ..|..++|+|. ...++.++.|+.|++|+++. +..+..-...+..++.+++|+.+|..+++
T Consensus        28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~   89 (347)
T KOG0647|consen   28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFS   89 (347)
T ss_pred             cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEe
Confidence            46889999994 45677899999999999985 34333322238899999999999988763

>KOG0300|consensus

Probab=98.86  E-value=5e-09  Score=49.48  Aligned_cols=64  Identities=22%  Similarity=0.317  Sum_probs=57.9

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |++|.+.|.+.+|...++.+++++.|..-.+|+..++..+..+.+ |......++-+|.++.+++
T Consensus       268 ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtG-Hd~ELtHcstHptQrLVvT  331 (481)
T KOG0300|consen  268 LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTG-HDSELTHCSTHPTQRLVVT  331 (481)
T ss_pred             eeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccC-cchhccccccCCcceEEEE
Confidence            468999999999999999999999999999999999999999988 8888888888999888764

>KOG0294|consensus

Probab=98.86  E-value=3.9e-08  Score=46.27  Aligned_cols=61  Identities=16%  Similarity=0.205  Sum_probs=49.4

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      +++|.+.|+.++.+|.++..++.+.|+.+++|++-.++....+.-  +.....+.|+|.|.++
T Consensus       123 lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L--~~~at~v~w~~~Gd~F  183 (362)
T KOG0294|consen  123 LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL--KNKATLVSWSPQGDHF  183 (362)
T ss_pred             ecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc--CCcceeeEEcCCCCEE
Confidence            467999999999999999999999999999999988876655553  2333448999988854

>KOG1036|consensus

Probab=98.82  E-value=2.6e-08  Score=46.48  Aligned_cols=57  Identities=19%  Similarity=0.281  Sum_probs=51.3

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +|.+++|+|--..+++++.||.|..|++.+.+.+.++.. ....|..++|+.+|..++
T Consensus       234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~-~~~SI~slsfs~dG~~LA  290 (323)
T KOG1036|consen  234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK-YETSISSLSFSMDGSLLA  290 (323)
T ss_pred             EeceeEeccccceEEecCCCceEEEccCcchhhhhhccC-CCCceEEEEeccCCCeEE
Confidence            578899999877899999999999999999998888887 677899999999998876

>KOG4227|consensus

Probab=98.82  E-value=2.7e-08  Score=48.23  Aligned_cols=64  Identities=22%  Similarity=0.407  Sum_probs=52.4

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECC------CCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTE------DFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|.+-|.++.|+.+++++++++.+..+.+|.++      ..+++.....+|+..+.+++|+..-+++++
T Consensus        53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~S  122 (609)
T KOG4227|consen   53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYS  122 (609)
T ss_pred             hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEec
Confidence            4688899999999999999999999999999876      335565555557799999999877666653

>KOG1538|consensus

Probab=98.80  E-value=6e-08  Score=49.77  Aligned_cols=57  Identities=21%  Similarity=0.269  Sum_probs=49.3

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      -|..++|-|||..++.+. +..+.+||..++....++.+ |.+.|.+++|+.+|+.++|
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKg-HKDtVycVAys~dGkrFAS   70 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKG-HKDTVYCVAYAKDGKRFAS   70 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCccccccccc-ccceEEEEEEccCCceecc
Confidence            577899999997765544 56799999999999999999 9999999999999998765

>KOG2106|consensus

Probab=98.79  E-value=2.6e-07  Score=46.00  Aligned_cols=61  Identities=21%  Similarity=0.254  Sum_probs=48.5

Q ss_pred             ccceEEEEECCCCCEEEEecCCCcEEEEECCCC-ceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           5 RAYGLHCVFSPDCRLLATTSADQTARIWNTEDF-SLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         5 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ...+..+.|+|+|..++.++.|..+++|.++.. +........+...+..+.|++|++++.+
T Consensus       447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~  508 (626)
T KOG2106|consen  447 NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVS  508 (626)
T ss_pred             CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEe
Confidence            457889999999999999999999999998854 3333333224488999999999998864

>KOG0305|consensus

Probab=98.78  E-value=1.1e-07  Score=47.05  Aligned_cols=62  Identities=27%  Similarity=0.310  Sum_probs=50.4

Q ss_pred             CccccceEEEEECCC-CCEEEEec--CCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPD-CRLLATTS--ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|.+.|.+++|+|- ...+++|+  .|+.+++|+...+..+.....  ..-|..+.|++..+-+++
T Consensus       340 ~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt--gsQVcsL~Wsk~~kEi~s  404 (484)
T KOG0305|consen  340 TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT--GSQVCSLIWSKKYKELLS  404 (484)
T ss_pred             eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc--CCceeeEEEcCCCCEEEE
Confidence            468999999999994 45666655  488999999999988877774  678999999998876653

>KOG1523|consensus

Probab=98.77  E-value=7.6e-08  Score=45.38  Aligned_cols=63  Identities=14%  Similarity=0.133  Sum_probs=50.4

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECC-CCc--eEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTE-DFS--LVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      |+.|...++.++|.|.++.|++++.|..-++|.+. .++  ....+.. ++..+.++.|+|.+..++
T Consensus        51 ls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlR-iNrAAt~V~WsP~enkFA  116 (361)
T KOG1523|consen   51 LSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLR-INRAATCVKWSPKENKFA  116 (361)
T ss_pred             hhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEE-eccceeeEeecCcCceEE
Confidence            35677889999999999999999999999999984 332  2223344 678899999999988775

>KOG1332|consensus

Probab=98.74  E-value=5.4e-08  Score=44.58  Aligned_cols=61  Identities=18%  Similarity=0.152  Sum_probs=48.8

Q ss_pred             CCccccceEEEEECC--CCCEEEEecCCCcEEEEECCCCceE--EEeeccCCCcEeEEEEccCCcE
Q psy7061           1 MAAHRAYGLHCVFSP--DCRLLATTSADQTARIWNTEDFSLV--RELGTANQRWVWDAAFTLDSKF   62 (65)
Q Consensus         1 l~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~   62 (65)
                      |.+|.+++..+.|.+  -|..+++++.|+.|.+|.-..++-.  ..... |...|++++|.|.+..
T Consensus        52 L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~-h~~SVNsV~wapheyg  116 (299)
T KOG1332|consen   52 LTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAA-HSASVNSVAWAPHEYG  116 (299)
T ss_pred             ecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhh-hcccceeecccccccc
Confidence            578999999999965  5789999999999999998776432  22334 7899999999987654

>KOG0639|consensus

Probab=98.73  E-value=5.3e-08  Score=48.43  Aligned_cols=56  Identities=18%  Similarity=0.275  Sum_probs=50.7

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           8 GLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+.++.+||.+..+++..++.+.+||+.+...++.+.+ |.+++.++..+++|..|-
T Consensus       512 CyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqG-htDGascIdis~dGtklW  567 (705)
T KOG0639|consen  512 CYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISKDGTKLW  567 (705)
T ss_pred             hhhhhcCCccceeeeeccCCcEEEEEcccceeeecccC-CCCCceeEEecCCCceee
Confidence            45678899999889999999999999999999999999 999999999999998764

>KOG0277|consensus

Probab=98.73  E-value=3.2e-07  Score=42.38  Aligned_cols=57  Identities=19%  Similarity=0.320  Sum_probs=47.1

Q ss_pred             CccccceEEEEECCC-CCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccC
Q psy7061           2 AAHRAYGLHCVFSPD-CRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD   59 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   59 (65)
                      ++|..-|+...|+|. .+.+++++.|+.+++|+++.......+.. |...+.++.|+.-
T Consensus       144 ~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a-h~~Eil~cdw~ky  201 (311)
T KOG0277|consen  144 NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA-HNSEILCCDWSKY  201 (311)
T ss_pred             cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe-ccceeEeeccccc
Confidence            578888999999994 67899999999999999986544445776 7889999999764

>KOG0290|consensus

Probab=98.69  E-value=1.8e-07  Score=43.91  Aligned_cols=36  Identities=19%  Similarity=0.325  Sum_probs=30.6

Q ss_pred             CccccceEEEEECCCC-CEEEEecCCCcEEEEECCCC
Q psy7061           2 AAHRAYGLHCVFSPDC-RLLATTSADQTARIWNTEDF   37 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   37 (65)
                      -.|...|..++|..++ ..+++.+.||.+++||++..
T Consensus       193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~l  229 (364)
T KOG0290|consen  193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSL  229 (364)
T ss_pred             EecCcceeEEEeccCccceEEEecCCCcEEEEEeccc
Confidence            3588899999999876 57899999999999998853

>KOG0274|consensus

Probab=98.68  E-value=5.5e-07  Score=45.36  Aligned_cols=57  Identities=18%  Similarity=0.177  Sum_probs=49.7

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEcc
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL   58 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   58 (65)
                      +.+|.+.|..+.+...+.++++++.|..+++|+..++.+...+.+ |...+.++...+
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~g-h~stv~~~~~~~  301 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQG-HTSSVRCLTIDP  301 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecC-CCceEEEEEccC
Confidence            468999999999987778999999999999999999999999998 888888776543

>KOG1524|consensus

Probab=98.67  E-value=2.4e-08  Score=49.91  Aligned_cols=61  Identities=25%  Similarity=0.251  Sum_probs=47.4

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..|.+.+.+-.|+|+|.-+++.++||.+++|.-. +-...++.. ....|.|++|.|++..++
T Consensus       101 ~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q-~~~~v~c~~W~p~S~~vl  161 (737)
T KOG1524|consen  101 SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQ-NEESIRCARWAPNSNSIV  161 (737)
T ss_pred             hhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhh-cCceeEEEEECCCCCceE
Confidence            3577888999999999999999999999999854 322223333 578899999999876553

>KOG0771|consensus

Probab=98.66  E-value=4.3e-07  Score=43.87  Aligned_cols=60  Identities=20%  Similarity=0.285  Sum_probs=51.5

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ..|.+++.+.+|+.++.++.++.|.+++..+.+.+.-....|...|..+.|+|+.+.+.+
T Consensus       282 ~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s  341 (398)
T KOG0771|consen  282 KSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLAS  341 (398)
T ss_pred             CcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccc
Confidence            468899999999999999999999999998777666555558899999999999887653

>KOG0268|consensus

Probab=98.66  E-value=2.3e-08  Score=47.80  Aligned_cols=57  Identities=21%  Similarity=0.278  Sum_probs=50.7

Q ss_pred             CCccccceEEEEECCCC-CEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEcc
Q psy7061           1 MAAHRAYGLHCVFSPDC-RLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL   58 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   58 (65)
                      |.+|...|.+++=+|+. ..+++|+.||.|++|++....++..+.. |.+.|..++++.
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~A-H~G~V~Gi~v~~  119 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKA-HEGLVRGICVTQ  119 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeec-ccCceeeEEecc
Confidence            46799999999989876 6789999999999999999999999998 899999888865

>KOG0310|consensus

Probab=98.65  E-value=5.6e-07  Score=44.32  Aligned_cols=60  Identities=22%  Similarity=0.307  Sum_probs=50.0

Q ss_pred             CCccccceEEEEECCCC-CEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCc
Q psy7061           1 MAAHRAYGLHCVFSPDC-RLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK   61 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   61 (65)
                      +.+|+.++-...|+|.+ ..+++++.|..+++|++.+......+.+ |.+-|.+.+|+|...
T Consensus       106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~-htDYVR~g~~~~~~~  166 (487)
T KOG0310|consen  106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG-HTDYVRCGDISPAND  166 (487)
T ss_pred             HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecC-CcceeEeeccccCCC
Confidence            35789999999999965 5678888888899999998877667777 999999999998654

>KOG0307|consensus

Probab=98.65  E-value=8.9e-08  Score=50.63  Aligned_cols=60  Identities=22%  Similarity=0.411  Sum_probs=53.3

Q ss_pred             CCccccceEEEEECCCC-CEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCc
Q psy7061           1 MAAHRAYGLHCVFSPDC-RLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK   61 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   61 (65)
                      +++|+..|.+++|++.+ .++++++.|+.+..|+..+++.+..+.. ..+.+..+.|+|..-
T Consensus       249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-~~nW~fdv~w~pr~P  309 (1049)
T KOG0307|consen  249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-QGNWCFDVQWCPRNP  309 (1049)
T ss_pred             hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-CCcceeeeeecCCCc
Confidence            35799999999999965 7899999999999999999999999888 789999999998644

>KOG2139|consensus

Probab=98.65  E-value=5.7e-07  Score=43.34  Aligned_cols=58  Identities=14%  Similarity=0.127  Sum_probs=47.9

Q ss_pred             cceEEEEECCCCCEEEEecC-CCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSA-DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..|+.+.|.+++-.+++++. +..+.+|+.+.+..+..... ...++.-+.|+|++.+++
T Consensus       196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-glgg~slLkwSPdgd~lf  254 (445)
T KOG2139|consen  196 NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK-GLGGFSLLKWSPDGDVLF  254 (445)
T ss_pred             ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-CCCceeeEEEcCCCCEEE
Confidence            57999999999987777664 67899999998877766644 567889999999999876

>KOG2110|consensus

Probab=98.65  E-value=1.1e-06  Score=42.20  Aligned_cols=58  Identities=16%  Similarity=0.084  Sum_probs=46.9

Q ss_pred             ceEEEEECCCCCEEEEec--CCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           7 YGLHCVFSPDCRLLATTS--ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+.++.+++.+.+++..+  ..|.|.+|+..+.+....+.. |+..+.+++|+++|.+++|
T Consensus       131 gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~a-H~~~lAalafs~~G~llAT  190 (391)
T KOG2110|consen  131 GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINA-HKGPLAALAFSPDGTLLAT  190 (391)
T ss_pred             ceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEe-cCCceeEEEECCCCCEEEE
Confidence            455566665556665543  368899999999999999998 9999999999999999986

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.61  E-value=1.1e-06  Score=43.10  Aligned_cols=59  Identities=15%  Similarity=0.140  Sum_probs=43.7

Q ss_pred             cccceEEEEECCCCCEEEEecC---CCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSA---DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +...+....|+|+++.++..+.   +..+++|++.++... .+.. ....+...+|+|+++.++
T Consensus       200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~-~~g~~~~~~~SPDG~~la  261 (435)
T PRK05137        200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGN-FPGMTFAPRFSPDGRKVV  261 (435)
T ss_pred             CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Eeec-CCCcccCcEECCCCCEEE
Confidence            4557888999999998766543   457999999877653 3333 455677899999998764

>KOG2055|consensus

Probab=98.61  E-value=1.7e-06  Score=42.70  Aligned_cols=60  Identities=17%  Similarity=0.231  Sum_probs=48.1

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +.+..+.|+.+++.+..++..+.|++|++....++..+.....-.-.+++.++++.++++
T Consensus       345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~  404 (514)
T KOG2055|consen  345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLAT  404 (514)
T ss_pred             cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEe
Confidence            567889999999988888889999999999888888887622333456777889988875

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.61  E-value=7.7e-07  Score=43.61  Aligned_cols=60  Identities=17%  Similarity=0.040  Sum_probs=41.2

Q ss_pred             ccccceEEEEECCCCCEEEEecCC---CcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSAD---QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+...+....|+|+++.++..+.+   ..+++|++.++..... .. .......++|+|+++.|+
T Consensus       201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~-~~g~~~~~~wSPDG~~La  263 (429)
T PRK01742        201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-AS-FRGHNGAPAFSPDGSRLA  263 (429)
T ss_pred             cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ec-CCCccCceeECCCCCEEE
Confidence            345568889999999988776543   3689999987654222 22 223345689999998775

>KOG0301|consensus

Probab=98.60  E-value=9.3e-07  Score=45.32  Aligned_cols=61  Identities=16%  Similarity=0.340  Sum_probs=46.0

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +++|..-|..+.+-+++ .++++++|+.+++|++ ++..+....+ |..-+.++...+++..|+
T Consensus       175 f~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~g-htn~vYsis~~~~~~~Iv  235 (745)
T KOG0301|consen  175 FSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHG-HTNFVYSISMALSDGLIV  235 (745)
T ss_pred             hccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeec-cceEEEEEEecCCCCeEE
Confidence            35788888888887654 4778888999999998 5777777887 888888888665555554

>KOG0274|consensus

Probab=98.60  E-value=1e-06  Score=44.48  Aligned_cols=55  Identities=16%  Similarity=0.225  Sum_probs=48.5

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD   59 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   59 (65)
                      .+|.+.|.++...  +..+++++.++.+.+|++..++.+..+.+ |...|.++.+.+.
T Consensus       328 ~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g-H~~~V~sl~~~~~  382 (537)
T KOG0274|consen  328 RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG-HTGRVYSLIVDSE  382 (537)
T ss_pred             ccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecC-CcceEEEEEecCc
Confidence            3588899999886  78899999999999999999999999999 9999999987663

>KOG1539|consensus

Probab=98.58  E-value=4.2e-07  Score=47.34  Aligned_cols=62  Identities=26%  Similarity=0.406  Sum_probs=48.5

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCce-----------------------------------------EE
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSL-----------------------------------------VR   41 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~   41 (65)
                      .|.+.|..++...-.+.+++++.+|.+.+|+......                                         .+
T Consensus       491 ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR  570 (910)
T KOG1539|consen  491 AHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR  570 (910)
T ss_pred             cccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH
Confidence            4778899998877677899999999999998765431                                         11


Q ss_pred             EeeccCCCcEeEEEEccCCcEEeC
Q psy7061          42 ELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus        42 ~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+.+ |.+.+++++|||+|+++++
T Consensus       571 ~f~g-h~nritd~~FS~DgrWlis  593 (910)
T KOG1539|consen  571 EFWG-HGNRITDMTFSPDGRWLIS  593 (910)
T ss_pred             Hhhc-cccceeeeEeCCCCcEEEE
Confidence            1223 7899999999999999975

>KOG1408|consensus

Probab=98.56  E-value=4.6e-07  Score=47.01  Aligned_cols=62  Identities=21%  Similarity=0.224  Sum_probs=56.5

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +|.++...+...|.|.++++...|..+.++|..++++..+..+ |...|..+.|.+|.+.+++
T Consensus       639 ~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~G-HsE~VTG~kF~nDCkHlIS  700 (1080)
T KOG1408|consen  639 DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTG-HSEAVTGVKFLNDCKHLIS  700 (1080)
T ss_pred             cCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcC-cchheeeeeecccchhhee
Confidence            4667788889999999999999999999999999999999999 9999999999999888764

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.56  E-value=2.9e-06  Score=42.42  Aligned_cols=60  Identities=8%  Similarity=0.032  Sum_probs=50.7

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+.|.++..+++|++++.+.....+.+.++++++....-.. ....+..+.|||++++++
T Consensus       400 ~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS-~~~lItdf~~~~nsr~iA  459 (668)
T COG4946         400 DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKS-EYGLITDFDWHPNSRWIA  459 (668)
T ss_pred             CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccc-ccceeEEEEEcCCceeEE
Confidence            345788999999999999998888999999998887655455 678899999999999886

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.55  E-value=3.4e-06  Score=39.73  Aligned_cols=59  Identities=29%  Similarity=0.376  Sum_probs=50.8

Q ss_pred             CccccceEEEEECCCCCEEEEecC-CCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCc
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSA-DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK   61 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   61 (65)
                      ..|...+..+.|+|++..++.+.. ++.+++|+......+..+.. |...+..++|+|++.
T Consensus       152 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~  211 (466)
T COG2319         152 EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG-HTDPVSSLAFSPDGG  211 (466)
T ss_pred             ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc-CCCceEEEEEcCCcc
Confidence            357778889999999988887775 99999999998777778887 899999999999886

>KOG0639|consensus

Probab=98.54  E-value=6.2e-08  Score=48.20  Aligned_cols=62  Identities=16%  Similarity=0.200  Sum_probs=51.7

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +++|+..+.+++.+++|..+=+++.|..|+.||++.++....-.  ...-|.++-++|++.+++
T Consensus       547 fqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd--F~SQIfSLg~cP~~dWla  608 (705)
T KOG0639|consen  547 FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD--FSSQIFSLGYCPTGDWLA  608 (705)
T ss_pred             ccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh--hhhhheecccCCCcccee
Confidence            57899999999999999999999999999999999877554333  466788888888888775

>KOG2445|consensus

Probab=98.54  E-value=2.3e-06  Score=40.58  Aligned_cols=63  Identities=24%  Similarity=0.389  Sum_probs=48.1

Q ss_pred             CCccccceEEEEECCC-CC---EEEEecCCCcEEEEECCCC--------------------ceEEEeeccCCCcEeEEEE
Q psy7061           1 MAAHRAYGLHCVFSPD-CR---LLATTSADQTARIWNTEDF--------------------SLVRELGTANQRWVWDAAF   56 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~v~~~~~   56 (65)
                      |.+|+..|..++|.|+ |+   .++++..|| +++|.+...                    +.+..+.+ |+..|+.+.|
T Consensus       219 L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~-H~~~VWrv~w  296 (361)
T KOG2445|consen  219 LPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDD-HNGEVWRVRW  296 (361)
T ss_pred             cCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccC-CCCceEEEEE
Confidence            3568889999999995 43   578888888 999987621                    12333455 8999999999


Q ss_pred             ccCCcEEeC
Q psy7061          57 TLDSKFLLT   65 (65)
Q Consensus        57 ~~~~~~i~s   65 (65)
                      +-.|..|.|
T Consensus       297 NmtGtiLsS  305 (361)
T KOG2445|consen  297 NMTGTILSS  305 (361)
T ss_pred             eeeeeEEee
Confidence            999988764

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.52  E-value=2.8e-06  Score=41.74  Aligned_cols=59  Identities=15%  Similarity=0.006  Sum_probs=42.0

Q ss_pred             cccceEEEEECCCCCEEEEecC---CCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSA---DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +...+....|+|+++.++..+.   ...+++|++.++..... .. ........+|+|+++.++
T Consensus       194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~-~~g~~~~~~~SPDG~~la  255 (427)
T PRK02889        194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-AN-FKGSNSAPAWSPDGRTLA  255 (427)
T ss_pred             CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ec-CCCCccceEECCCCCEEE
Confidence            4456778899999988766553   23588999987765433 32 345567899999998775

>KOG1272|consensus

Probab=98.52  E-value=4.4e-07  Score=44.77  Aligned_cols=59  Identities=19%  Similarity=0.272  Sum_probs=43.8

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcE
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF   62 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   62 (65)
                      ..|.+.|.++++.++|++.++.+.|..+++||++.-....+...  ......+++|..+..
T Consensus       290 LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~SqkglL  348 (545)
T KOG1272|consen  290 LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQKGLL  348 (545)
T ss_pred             HhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--CCCccccccccccce
Confidence            35889999999999999999999999999999997654444432  234445555555443

>KOG4328|consensus

Probab=98.52  E-value=5.6e-07  Score=44.22  Aligned_cols=61  Identities=33%  Similarity=0.426  Sum_probs=47.0

Q ss_pred             cccceEEEEECCCC-CEEEEecCCCcEEEEECCCCc--e--EEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           4 HRAYGLHCVFSPDC-RLLATTSADQTARIWNTEDFS--L--VRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         4 ~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |...|..++++|-. ..+++++.|+..++||++.-.  .  +..... |+..|.+..|+|.+-.++|
T Consensus       321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~-HrrsV~sAyFSPs~gtl~T  386 (498)
T KOG4328|consen  321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLP-HRRSVNSAYFSPSGGTLLT  386 (498)
T ss_pred             hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccc-ccceeeeeEEcCCCCceEe
Confidence            66689999999955 568999999999999998422  1  223334 8999999999998765653

>smart00320 WD40 WD40 repeats

Probab=98.51  E-value=5.2e-07  Score=28.90  Aligned_cols=31  Identities=35%  Similarity=0.634  Sum_probs=27.0

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEE
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWN   33 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~   33 (65)
                      .|...+.++.|.+++..+++++.++.+++|+
T Consensus        10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4667899999999888999999999999885

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1034|consensus

Probab=98.51  E-value=4.3e-07  Score=43.18  Aligned_cols=36  Identities=25%  Similarity=0.402  Sum_probs=33.4

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTED   36 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~   36 (65)
                      +.+|...|.+++|++++..+++++.|+.+++|++..
T Consensus       177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~  212 (385)
T KOG1034|consen  177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV  212 (385)
T ss_pred             cccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence            367999999999999999999999999999999983

>KOG1963|consensus

Probab=98.50  E-value=1.8e-06  Score=45.00  Aligned_cols=61  Identities=23%  Similarity=0.267  Sum_probs=50.5

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCC----CceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTED----FSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |+..+.+..++|.++.++++..+|++.+|.-..    ......++. |...|.++.|+++|.+++|
T Consensus       204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW-H~~~V~~L~fS~~G~~LlS  268 (792)
T KOG1963|consen  204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW-HHDEVNSLSFSSDGAYLLS  268 (792)
T ss_pred             hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe-cccccceeEEecCCceEee
Confidence            555578899999999999999999999996432    234556788 8899999999999999875

>KOG0321|consensus

Probab=98.50  E-value=3.8e-07  Score=46.34  Aligned_cols=60  Identities=23%  Similarity=0.266  Sum_probs=51.3

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEE--eeccCCCcEeEEEEccCCcEE
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRE--LGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      .|.+.|..+.|.|....+++.+.|..+++|++...+.+..  +.+ |...|.+++|.|....+
T Consensus        98 aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G-H~~SvkS~cf~~~n~~v  159 (720)
T KOG0321|consen   98 AHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG-HTGSVKSECFMPTNPAV  159 (720)
T ss_pred             cccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc-cccccchhhhccCCCcc
Confidence            4888999999999667899999999999999998877766  667 89999999998875544

>KOG1332|consensus

Probab=98.49  E-value=8.4e-07  Score=40.88  Aligned_cols=63  Identities=21%  Similarity=0.395  Sum_probs=48.3

Q ss_pred             CCccccceEEEEECCCC----CEEEEecCCCcEEEEECCCC---ceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           1 MAAHRAYGLHCVFSPDC----RLLATTSADQTARIWNTEDF---SLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      |.+|...|..++|+|.-    ..++++++|+.+.+|..+..   .....+.. ....++.+.|++.|..++
T Consensus       203 l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~-f~~~~w~vSWS~sGn~La  272 (299)
T KOG1332|consen  203 LEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE-FPDVVWRVSWSLSGNILA  272 (299)
T ss_pred             hhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc-CCcceEEEEEeccccEEE
Confidence            56799999999999942    36899999999999987622   12223334 678899999999998775

>KOG2139|consensus

Probab=98.48  E-value=3e-06  Score=41.03  Aligned_cols=58  Identities=21%  Similarity=0.202  Sum_probs=43.9

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +.+..+.|+|++.++..+..|+..++|+.....-.....- ..+.|...+|+|+|+.++
T Consensus       239 gg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLL  296 (445)
T KOG2139|consen  239 GGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLL  296 (445)
T ss_pred             CceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEE
Confidence            4577899999999999999999999996543322222222 345899999999998875

>KOG2445|consensus

Probab=98.48  E-value=6.4e-06  Score=39.15  Aligned_cols=56  Identities=23%  Similarity=0.374  Sum_probs=43.8

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCC----ceEEEeeccCCCcEeEEEE-ccC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDF----SLVRELGTANQRWVWDAAF-TLD   59 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~-~~~   59 (65)
                      +|..-|.++.|.+.|+.+++++.|..+++|+..+.    ........ |...+..+.| +|.
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wra-h~~Si~rV~WAhPE   71 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRA-HDGSIWRVVWAHPE   71 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEe-cCCcEEEEEecCcc
Confidence            47777899999999999999999999999996532    22333445 8889999999 444

>KOG0649|consensus

Probab=98.47  E-value=2.3e-06  Score=39.60  Aligned_cols=45  Identities=20%  Similarity=0.270  Sum_probs=36.1

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeec
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGT   45 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   45 (65)
                      +++|+..+-++.-......++++++|+.+++|+.+++++...+..
T Consensus       152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~  196 (325)
T KOG0649|consen  152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEP  196 (325)
T ss_pred             EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecc
Confidence            467888888877644455689999999999999999988776653

>KOG1445|consensus

Probab=98.47  E-value=1.1e-06  Score=45.19  Aligned_cols=58  Identities=21%  Similarity=0.154  Sum_probs=50.4

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+.++.|+|...-++..+..+.+++||+.+++.+..+.. |...|.++.|+.+|..+++
T Consensus       130 ~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~-h~d~vQSa~WseDG~llat  187 (1012)
T KOG1445|consen  130 IVECLRFHPTADGILASGAHGSVYITDISTQKTAVELSG-HTDKVQSADWSEDGKLLAT  187 (1012)
T ss_pred             EEEEeecccCcCceEEeccCceEEEEEcccCceeecccC-CchhhhccccccCCceEee
Confidence            467888999766666667789999999999999999998 9999999999999998864

>KOG2919|consensus

Probab=98.46  E-value=1.5e-06  Score=41.49  Aligned_cols=55  Identities=20%  Similarity=0.276  Sum_probs=43.6

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEECCC-CceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           9 LHCVFSPDCRLLATTSADQTARIWNTED-FSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ...+..|+++++++++.++.|++|+++. +.....+.. +...++.++++|--..++
T Consensus       301 I~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~-~sd~vNgvslnP~mpila  356 (406)
T KOG2919|consen  301 ILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN-YSDTVNGVSLNPIMPILA  356 (406)
T ss_pred             EEEecCCCCceeeccCCCccEEEEecCCCCCccccccc-ccccccceecCcccceee
Confidence            3456678899999999999999999997 555556666 788899999998755544

>KOG0299|consensus

Probab=98.46  E-value=3.7e-06  Score=41.45  Aligned_cols=57  Identities=26%  Similarity=0.316  Sum_probs=46.3

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCC----ceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDF----SLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..|+++...|...++++++.++.|++|.+.++    +.+..+.  -...|+.++|+++|+.|+
T Consensus       381 ~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls--~~GfVNsl~f~~sgk~iv  441 (479)
T KOG0299|consen  381 FWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS--LVGFVNSLAFSNSGKRIV  441 (479)
T ss_pred             cceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc--cccEEEEEEEccCCCEEE
Confidence            37888999999999999999999999998865    2333333  468899999999999664

>KOG0288|consensus

Probab=98.45  E-value=5e-07  Score=43.94  Aligned_cols=58  Identities=22%  Similarity=0.319  Sum_probs=50.2

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCc
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK   61 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   61 (65)
                      +-.+.++.++|.++++.+++++.++.+++|+.+..+...++.+ |...|.++.|.....
T Consensus       217 Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsG-HtdkVt~ak~~~~~~  274 (459)
T KOG0288|consen  217 GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSG-HTDKVTAAKFKLSHS  274 (459)
T ss_pred             ccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcc-cccceeeehhhcccc
Confidence            4456799999999999999999999999999999999889999 999999888765543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.44  E-value=9.5e-06  Score=39.43  Aligned_cols=54  Identities=22%  Similarity=0.235  Sum_probs=42.0

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           9 LHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+.++|+++++...+.++.+.++|+.+.+.+.....  ......++++++|++++
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~--G~~~~~i~~s~DG~~~~   93 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV--GGNPRGIAVSPDGKYVY   93 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---SSEEEEEEE--TTTEEE
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--CCCcceEEEcCCCCEEE
Confidence            4467899999888888899999999999998888875  55678899999999886

...

>KOG1274|consensus

Probab=98.43  E-value=3.3e-06  Score=44.51  Aligned_cols=60  Identities=18%  Similarity=0.180  Sum_probs=53.9

Q ss_pred             ccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           5 RAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         5 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +-.+..+.|+.+|++++.++.|-.|++.+..+......+.+ |...|.++.|+|++.++++
T Consensus        96 tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg-h~apVl~l~~~p~~~fLAv  155 (933)
T KOG1274|consen   96 TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG-HDAPVLQLSYDPKGNFLAV  155 (933)
T ss_pred             eccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc-cCCceeeeeEcCCCCEEEE
Confidence            34677889999999999999999999999998888888888 9999999999999998874

>KOG0644|consensus

Probab=98.42  E-value=5.8e-08  Score=50.64  Aligned_cols=59  Identities=22%  Similarity=0.238  Sum_probs=52.5

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS   60 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   60 (65)
                      +.||.+.+..+..+.+.-.+++++.|..+++|.+.++..+..+.+ |.+.|+.++|+|..
T Consensus       228 ~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrg-htgavtaiafsP~~  286 (1113)
T KOG0644|consen  228 CRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRG-HTGAVTAIAFSPRA  286 (1113)
T ss_pred             CCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhc-cccceeeeccCccc
Confidence            368999999998877777889999999999999999999989998 99999999999854

>KOG1963|consensus

Probab=98.41  E-value=2.3e-06  Score=44.62  Aligned_cols=61  Identities=16%  Similarity=0.071  Sum_probs=50.4

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..|...|.++.|+++|..+.+|+..+.+-+|.+.+++.. -+.. -...+..+.++|++.+..
T Consensus       248 HWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq-fLPR-Lgs~I~~i~vS~ds~~~s  308 (792)
T KOG1963|consen  248 HWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ-FLPR-LGSPILHIVVSPDSDLYS  308 (792)
T ss_pred             EecccccceeEEecCCceEeecccceEEEEEeecCCCcc-cccc-cCCeeEEEEEcCCCCeEE
Confidence            357789999999999999999999999999999988732 2222 568899999999988754

>KOG2055|consensus

Probab=98.40  E-value=6e-06  Score=40.92  Aligned_cols=55  Identities=18%  Similarity=0.215  Sum_probs=46.3

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCC--CceEEEeeccCCCcEeEEEEccCCc
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTED--FSLVRELGTANQRWVWDAAFTLDSK   61 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~   61 (65)
                      +.|.++.|+|..+.+++++.++.+++|.++.  ...+..+.- ...++.+.+|.|+|.
T Consensus       214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l-~~fPi~~a~f~p~G~  270 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-EKFPIQKAEFAPNGH  270 (514)
T ss_pred             CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee-ccCccceeeecCCCc
Confidence            5799999999999999999999999998873  344555555 678899999999998

>KOG0644|consensus

Probab=98.40  E-value=1.7e-07  Score=49.02  Aligned_cols=58  Identities=21%  Similarity=0.288  Sum_probs=51.5

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD   59 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   59 (65)
                      |.+|.+.|+++.|...|..+++++.+..+++|...++.+.....+ |...+..++.+.+
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG-hs~ditdlavs~~  243 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRG-HSGDITDLAVSSN  243 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCC-Cccccchhccchh
Confidence            457999999999999999999999999999999999999999998 8888888776544

>KOG2919|consensus

Probab=98.39  E-value=7.6e-06  Score=39.23  Aligned_cols=60  Identities=23%  Similarity=0.222  Sum_probs=50.4

Q ss_pred             ccceEEEEECCC-CCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           5 RAYGLHCVFSPD-CRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         5 ~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+-+.+++|+|- ...++.++....+-+|.-.....+..+.+ |.++|+.++|.++|..+++
T Consensus       207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg-h~gGvThL~~~edGn~lfs  267 (406)
T KOG2919|consen  207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG-HGGGVTHLQWCEDGNKLFS  267 (406)
T ss_pred             cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc-cCCCeeeEEeccCcCeecc
Confidence            345778899994 56788888888888888888888888888 9999999999999988764

>KOG0641|consensus

Probab=98.38  E-value=1.5e-05  Score=36.75  Aligned_cols=61  Identities=15%  Similarity=0.104  Sum_probs=48.8

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCC----CceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTED----FSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .|+.+|.++.|+|.-.++++++.|-.+++-+++.    .-.+..... |...+..+.|+|..-.++
T Consensus       271 phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e-hkdk~i~~rwh~~d~sfi  335 (350)
T KOG0641|consen  271 PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE-HKDKAIQCRWHPQDFSFI  335 (350)
T ss_pred             CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEe-ccCceEEEEecCccceee
Confidence            5888999999999888999999999999998873    223444445 899999999999765443

>KOG0642|consensus

Probab=98.38  E-value=2.9e-06  Score=42.70  Aligned_cols=62  Identities=26%  Similarity=0.240  Sum_probs=49.2

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCC------C----ceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTED------F----SLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+|.++|.++.+.++++.+.+++-|+.++.|++..      .    .....+.+ |...++.+++|+....++
T Consensus       341 raH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~G-htdavw~l~~s~~~~~Ll  412 (577)
T KOG0642|consen  341 RAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLG-HTDAVWLLALSSTKDRLL  412 (577)
T ss_pred             ecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceec-cccceeeeeeccccccee
Confidence            57999999999999999999999999999995541      1    12334555 889999999988766654

>KOG0290|consensus

Probab=98.38  E-value=1.7e-06  Score=40.78  Aligned_cols=59  Identities=17%  Similarity=0.209  Sum_probs=43.9

Q ss_pred             CCccccceEEEEECCCC-CEEEEecCCCcEEEEECCCCce--EE--EeeccCCCcEeEEEEccC
Q psy7061           1 MAAHRAYGLHCVFSPDC-RLLATTSADQTARIWNTEDFSL--VR--ELGTANQRWVWDAAFTLD   59 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~v~~~~~~~~   59 (65)
                      |+.|++.|..++|.|.+ ..+++++.|..+-+|++.....  +.  .+......+|..++|++.
T Consensus       283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~  346 (364)
T KOG0290|consen  283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSS  346 (364)
T ss_pred             hhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeeccc
Confidence            56899999999999964 6899999999999999974221  11  111124678999999854

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.38  E-value=8.9e-06  Score=41.12  Aligned_cols=58  Identities=16%  Similarity=0.124  Sum_probs=45.6

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ....+.+++++|+..+++.|..|+.+.+|+...+...  ... .......++|+|+|..++
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~k-a~~~P~~iaWHp~gai~~  315 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAK-AEFIPTLIAWHPDGAIFV  315 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eee-ecccceEEEEcCCCcEEE
Confidence            3457889999999999999999999999998755332  333 456678899999987764

>KOG4378|consensus

Probab=98.37  E-value=2.5e-06  Score=42.80  Aligned_cols=61  Identities=23%  Similarity=0.246  Sum_probs=50.3

Q ss_pred             CccccceEEEEECCCC-CEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPDC-RLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +.|..+...++|+|.. ..+++.+.|..+.+||.........+..  ..+...++|.++|.+++
T Consensus       205 ~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y--~~Plstvaf~~~G~~L~  266 (673)
T KOG4378|consen  205 EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY--SHPLSTVAFSECGTYLC  266 (673)
T ss_pred             hhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee--cCCcceeeecCCceEEE
Confidence            3477888899999954 5788999999999999997777666664  56788999999998875

>KOG1188|consensus

Probab=98.35  E-value=2.7e-06  Score=40.68  Aligned_cols=57  Identities=14%  Similarity=0.137  Sum_probs=41.7

Q ss_pred             ccccceEEEEECCC-CCEEEEecCCCcEEEEECCCCc---eEEEeeccCCCcEeEEEEccCC
Q psy7061           3 AHRAYGLHCVFSPD-CRLLATTSADQTARIWNTEDFS---LVRELGTANQRWVWDAAFTLDS   60 (65)
Q Consensus         3 ~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~   60 (65)
                      .|..+|+.+.|+|. .+++++++.||.+.+|++....   .+..... +...|..+.|..++
T Consensus       163 SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~~sSI~~igw~~~~  223 (376)
T KOG1188|consen  163 SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-HGSSIHLIGWLSKK  223 (376)
T ss_pred             hccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-ccceeeeeeeecCC
Confidence            58899999999995 5799999999999999987432   1222222 45667777776554

>KOG4283|consensus

Probab=98.34  E-value=6.9e-06  Score=39.01  Aligned_cols=58  Identities=19%  Similarity=0.244  Sum_probs=48.2

Q ss_pred             cceEEEEECCC-C-C-EEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPD-C-R-LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +.|+.-.++|- . . .++++..+-.|++.|+.++.....+.+ |+.+|..+.|+|...+++
T Consensus       144 ~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG-Hr~~vlaV~Wsp~~e~vL  204 (397)
T KOG4283|consen  144 GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG-HRDGVLAVEWSPSSEWVL  204 (397)
T ss_pred             ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc-ccCceEEEEeccCceeEE
Confidence            45666777773 2 2 467778888999999999999999999 999999999999988775

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.34  E-value=1.2e-05  Score=39.45  Aligned_cols=59  Identities=19%  Similarity=0.051  Sum_probs=40.3

Q ss_pred             cccceEEEEECCCCCEEEEecCC---CcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSAD---QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +...+....|+|+++.++..+.+   ..++++++.++..... .. ........+|+|+++.++
T Consensus       197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~-~~g~~~~~~~SpDG~~la  258 (430)
T PRK00178        197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TN-FEGLNGAPAWSPDGSKLA  258 (430)
T ss_pred             CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cC-CCCCcCCeEECCCCCEEE
Confidence            33456788999999887665432   3588889887765432 22 334455789999998775

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.33  E-value=1.3e-05  Score=39.54  Aligned_cols=57  Identities=19%  Similarity=0.124  Sum_probs=39.5

Q ss_pred             cceEEEEECCCCCEEEEec---CCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTS---ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+....|+|+|+.++..+   .+..++++++..++... +.. .......++|+|+|+.|+
T Consensus       199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~-~~~~~~~~~~SPDG~~La  258 (429)
T PRK03629        199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VAS-FPRHNGAPAFSPDGSKLA  258 (429)
T ss_pred             CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccC-CCCCcCCeEECCCCCEEE
Confidence            4577899999998876543   23468888988765432 222 234456789999999875

>KOG0307|consensus

Probab=98.33  E-value=7.3e-07  Score=47.45  Aligned_cols=58  Identities=21%  Similarity=0.184  Sum_probs=44.9

Q ss_pred             CccccceEEEEECCCC-CEEEEecCCCcEEEEECCCCceEEEeec-cCCCcEeEEEEccC
Q psy7061           2 AAHRAYGLHCVFSPDC-RLLATTSADQTARIWNTEDFSLVRELGT-ANQRWVWDAAFTLD   59 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~   59 (65)
                      ..|.+.|..++|.+.+ +++++|+.++.+.+||+...+.-..+.. .....|.+++|+..
T Consensus       113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrk  172 (1049)
T KOG0307|consen  113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRK  172 (1049)
T ss_pred             cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchh
Confidence            4589999999999965 6999999999999999986544333322 14578888888754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.32  E-value=1.9e-05  Score=36.47  Aligned_cols=54  Identities=20%  Similarity=0.359  Sum_probs=40.0

Q ss_pred             EEEEECCCCCEE-EEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           9 LHCVFSPDCRLL-ATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         9 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+.|+|+++.+ +....+..+.+|+..+++......  +...+.+++|+|+++.++
T Consensus       210 ~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~  264 (300)
T TIGR03866       210 VGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQLAFTPDEKYLL  264 (300)
T ss_pred             cceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcceEEECCCCCEEE
Confidence            357789988864 444556679999998877665543  345788999999998875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.31  E-value=7.5e-06  Score=40.31  Aligned_cols=59  Identities=17%  Similarity=0.055  Sum_probs=40.7

Q ss_pred             cccceEEEEECCCCCEEEEecC---CCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSA---DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +...+....|+|+++.++..+.   ...+++|++..+.... +.. ........+|+|+++.++
T Consensus       202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~-~~g~~~~~~~SpDG~~l~  263 (433)
T PRK04922        202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VAS-FRGINGAPSFSPDGRRLA  263 (433)
T ss_pred             CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-ecc-CCCCccCceECCCCCEEE
Confidence            3445778899999998776653   3468889988766533 333 334455789999998764

>KOG4497|consensus

Probab=98.27  E-value=2.1e-05  Score=37.94  Aligned_cols=58  Identities=24%  Similarity=0.174  Sum_probs=44.0

Q ss_pred             ccceEEEEECCCCCE-EEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           5 RAYGLHCVFSPDCRL-LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         5 ~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +..+....|+|+|+. +.+..-+.++.+|.+.+........  .+..+..++|+|+|++.+
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~kg~~f~~dg~f~a  149 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PKTNVKGYAFHPDGQFCA  149 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--cccCceeEEECCCCceee
Confidence            456788999999965 5666668899999998776654433  455668999999998764

>KOG4547|consensus

Probab=98.26  E-value=2.4e-05  Score=39.56  Aligned_cols=52  Identities=21%  Similarity=0.222  Sum_probs=44.7

Q ss_pred             ccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccC
Q psy7061           5 RAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD   59 (65)
Q Consensus         5 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   59 (65)
                      +..+..+.++||+..+++++  +.+++|++.+.+.+..+.+ |...|.+++|.-+
T Consensus       144 ~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftg-h~s~v~t~~f~~~  195 (541)
T KOG4547|consen  144 KPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTG-HGSPVRTLSFTTL  195 (541)
T ss_pred             CCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecC-CCcceEEEEEEEe
Confidence            34577888999988887765  6899999999999999999 9999999999766

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.26  E-value=4.8e-06  Score=27.59  Aligned_cols=27  Identities=22%  Similarity=0.322  Sum_probs=22.8

Q ss_pred             ceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061          38 SLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus        38 ~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +.+..+.. |...|.+++|+|++..+++
T Consensus         2 ~~~~~~~~-h~~~i~~i~~~~~~~~~~s   28 (39)
T PF00400_consen    2 KCVRTFRG-HSSSINSIAWSPDGNFLAS   28 (39)
T ss_dssp             EEEEEEES-SSSSEEEEEEETTSSEEEE
T ss_pred             eEEEEEcC-CCCcEEEEEEeccccccee
Confidence            45667777 9999999999999988874

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.25  E-value=2.2e-05  Score=38.24  Aligned_cols=57  Identities=19%  Similarity=0.059  Sum_probs=39.8

Q ss_pred             cceEEEEECCCCCEEEEecCC---CcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSAD---QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+....|+|+++.++.....   ..+++|++.++..... .. ....+..++|+|+++.++
T Consensus       190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~-~~~~~~~~~~spDg~~l~  249 (417)
T TIGR02800       190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-AS-FPGMNGAPAFSPDGSKLA  249 (417)
T ss_pred             CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ec-CCCCccceEECCCCCEEE
Confidence            346678899999987765533   4688999887654332 23 345566789999998664

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.25  E-value=2.6e-05  Score=36.01  Aligned_cols=51  Identities=16%  Similarity=0.340  Sum_probs=39.8

Q ss_pred             cceEEEEECCCCCEEEEe-cCCCcEEEEECCCCceEEEeeccCCCcEeEEEEcc
Q psy7061           6 AYGLHCVFSPDCRLLATT-SADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL   58 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   58 (65)
                      ..+..+.|+|+++.++++ ..++.+.+|++.+++.+..+..  ....+.++++|
T Consensus       249 ~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~  300 (300)
T TIGR03866       249 QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV--GRLPWGVVVRP  300 (300)
T ss_pred             CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc--ccccceeEeCC
Confidence            356788999999988765 4689999999999998888765  35557777764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1272|consensus

Probab=98.21  E-value=1.6e-06  Score=42.97  Aligned_cols=58  Identities=10%  Similarity=0.101  Sum_probs=48.4

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+......|-...+-.|..+|.|.+|...+...+..+.. |...|.++++.++|++++|
T Consensus       253 ~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLc-H~g~V~siAv~~~G~YMaT  310 (545)
T KOG1272|consen  253 RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILC-HRGPVSSIAVDRGGRYMAT  310 (545)
T ss_pred             ccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHh-cCCCcceEEECCCCcEEee
Confidence            334445556555677888899999999999999888888 9999999999999999986

>KOG0301|consensus

Probab=98.21  E-value=5.8e-05  Score=39.26  Aligned_cols=60  Identities=20%  Similarity=0.416  Sum_probs=46.7

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+|++.+++++..+++..++++++|+.+++|...  .+...+.- ..-.++++.+=++|+.+.
T Consensus       216 ~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~l-PttsiWsa~~L~NgDIvv  275 (745)
T KOG0301|consen  216 HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITL-PTTSIWSAKVLLNGDIVV  275 (745)
T ss_pred             eccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEec-CccceEEEEEeeCCCEEE
Confidence            4788999999988888899999999999999976  44445543 445788887777776653

>KOG0642|consensus

Probab=98.19  E-value=4.8e-06  Score=41.94  Aligned_cols=61  Identities=18%  Similarity=0.250  Sum_probs=49.3

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCC--------CceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTED--------FSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |..-+....|.+....+++++.++.+.+|+++.        -+.+.++.+ |..+|.++++.+++..+++
T Consensus       293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra-H~gPVl~v~v~~n~~~~ys  361 (577)
T KOG0642|consen  293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA-HEGPVLCVVVPSNGEHCYS  361 (577)
T ss_pred             chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec-ccCceEEEEecCCceEEEe
Confidence            445566778888778899999999999999932        245777888 9999999999999887754

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.19  E-value=3.7e-05  Score=38.00  Aligned_cols=55  Identities=18%  Similarity=0.106  Sum_probs=38.6

Q ss_pred             eEEEEECCCCCEEEEe-cCCC--cEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           8 GLHCVFSPDCRLLATT-SADQ--TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .....|+|+|+.++.. ..++  .+++|+++++.... +.. ....+....|+|+++.|+
T Consensus       245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~-~~~~~~~~~wSPDG~~I~  302 (429)
T PRK03629        245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTD-GRSNNTEPTWFPDSQNLA  302 (429)
T ss_pred             cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccC-CCCCcCceEECCCCCEEE
Confidence            4457899999877644 3343  58888988766543 333 345678899999999775

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.18  E-value=2.1e-05  Score=38.77  Aligned_cols=55  Identities=22%  Similarity=0.190  Sum_probs=37.3

Q ss_pred             eEEEEECCCCCEEEEec-CCCcEEE--EECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           8 GLHCVFSPDCRLLATTS-ADQTARI--WNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .....|+|+++.++.+. .++...+  +++..+.. ..+.. +...+....|+|+++.|+
T Consensus       250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~-~~~~~~~~~wSpDG~~i~  307 (429)
T PRK01742        250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTS-GAGNNTEPSWSPDGQSIL  307 (429)
T ss_pred             cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeecc-CCCCcCCEEECCCCCEEE
Confidence            34678999998776654 5665544  46555543 34444 556678899999998765

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.17  E-value=4.8e-05  Score=37.70  Aligned_cols=56  Identities=18%  Similarity=0.146  Sum_probs=39.2

Q ss_pred             ceEEEEECCCCCEEEEecCC---CcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSAD---QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+....|+|+|++++....+   ..+++|++.+++... +.. ....+....|+|+++.|+
T Consensus       328 ~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~-~~~~~~~p~wSpDG~~L~  386 (428)
T PRK01029        328 NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTT-SPENKESPSWAIDSLHLV  386 (428)
T ss_pred             CccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccC-CCCCccceEECCCCCEEE
Confidence            45678899999987665432   368889988776543 332 234567789999998775

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.14  E-value=2.1e-05  Score=38.76  Aligned_cols=56  Identities=23%  Similarity=0.312  Sum_probs=36.5

Q ss_pred             ceEEEEECCCCCEEE-EecCCCcEEEEE--CCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLA-TTSADQTARIWN--TEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ......|+|+++.++ +...++...+|.  ...+. ...+.. +........|+|+++.++
T Consensus       241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~-~~~~~~~~~wSpDG~~l~  299 (427)
T PRK02889        241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQ-SSGIDTEPFFSPDGRSIY  299 (427)
T ss_pred             CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCC-CCCCCcCeEEcCCCCEEE
Confidence            345688999998775 456666655554  44443 334443 444556788999999875

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.13  E-value=4e-05  Score=38.13  Aligned_cols=56  Identities=20%  Similarity=0.066  Sum_probs=37.3

Q ss_pred             ceEEEEECCCCCEEEEecC-C--CcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSA-D--QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+....|+|++++++..+. +  ..++++++.+++... +.. ........+|+|+++.++
T Consensus       219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~-~~g~~~~~~wSPDG~~La  277 (448)
T PRK04792        219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTS-FPGINGAPRFSPDGKKLA  277 (448)
T ss_pred             cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecC-CCCCcCCeeECCCCCEEE
Confidence            4567899999988766543 2  357788887765432 222 233345789999999775

>KOG0270|consensus

Probab=98.12  E-value=4.5e-05  Score=37.76  Aligned_cols=58  Identities=19%  Similarity=0.016  Sum_probs=40.2

Q ss_pred             ccccceEEEEECCC-CCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCc
Q psy7061           3 AHRAYGLHCVFSPD-CRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK   61 (65)
Q Consensus         3 ~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   61 (65)
                      .|...|.++.|+|. ...+++|+.++.|.+.+.+........-. ....|-.++|+|...
T Consensus       284 ~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se  342 (463)
T KOG0270|consen  284 HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSE  342 (463)
T ss_pred             hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCc
Confidence            47788999999994 57899999999999999984222111111 345566666666543

>KOG4328|consensus

Probab=98.10  E-value=5e-05  Score=37.83  Aligned_cols=55  Identities=18%  Similarity=0.148  Sum_probs=43.6

Q ss_pred             cccceEEEEECCCC--CEEEEecCCCcEEEEECC----CCceEEEeeccCCCcEeEEEEccC
Q psy7061           4 HRAYGLHCVFSPDC--RLLATTSADQTARIWNTE----DFSLVRELGTANQRWVWDAAFTLD   59 (65)
Q Consensus         4 ~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~   59 (65)
                      +.+.|+++.|+|..  +.+++|...|.|-+|++.    ...-+..+.. |...|.++.|+|.
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~-hs~~Vs~l~F~P~  245 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP-HSGPVSGLKFSPA  245 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEecc-CCccccceEecCC
Confidence            55789999999954  467888899999999995    2234555666 8899999999985

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=98.10  E-value=2.9e-05  Score=27.23  Aligned_cols=30  Identities=13%  Similarity=0.198  Sum_probs=27.5

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECC
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTE   35 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~   35 (65)
                      ..|..+.|+|....++.+..++.+.++++.
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            468899999999999999999999999984

>KOG1523|consensus

Probab=98.08  E-value=6.1e-05  Score=36.15  Aligned_cols=59  Identities=12%  Similarity=0.135  Sum_probs=49.2

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCc---eEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFS---LVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +.|++-+|++++..++.+-+...+.+|......   ...++.. |...+..+.|+|....|.+
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~-Hd~~vtgvdWap~snrIvt   72 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE-HDKIVTGVDWAPKSNRIVT   72 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhh-hCcceeEEeecCCCCceeE
Confidence            578999999999999999999999999877544   4556666 8999999999999877653

>KOG4378|consensus

Probab=98.08  E-value=8.1e-05  Score=37.77  Aligned_cols=64  Identities=14%  Similarity=0.129  Sum_probs=52.8

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      |++|+..|+++.|.....++++++..|.+.+....++.....+.......|.-+.|+|..+.++
T Consensus       117 lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL  180 (673)
T KOG4378|consen  117 LKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLL  180 (673)
T ss_pred             ccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceee
Confidence            5789999999999988899999999999999998877766666652356677888988877664

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.07  E-value=0.00013  Score=36.21  Aligned_cols=57  Identities=11%  Similarity=0.090  Sum_probs=37.5

Q ss_pred             cceEEEEECCCCCEEEEec-CCC--cEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTS-ADQ--TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .......|+|+++.++..+ .++  .++++++..+... .+.. ....+....|+|+++.|+
T Consensus       290 ~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~-~~~~~~~~~~SpdG~~ia  349 (435)
T PRK05137        290 AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISF-GGGRYSTPVWSPRGDLIA  349 (435)
T ss_pred             CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eeec-CCCcccCeEECCCCCEEE
Confidence            3455678999998776554 333  5777787655443 3333 344566788999998875

>KOG2048|consensus

Probab=98.07  E-value=0.00015  Score=37.72  Aligned_cols=57  Identities=11%  Similarity=0.183  Sum_probs=48.4

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..|..++|++ +..+.+.+.++.+..||+.+.+....... ....+++++.+|.++.++
T Consensus        70 rsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~-~gg~IWsiai~p~~~~l~  126 (691)
T KOG2048|consen   70 RSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDS-NGGAIWSIAINPENTILA  126 (691)
T ss_pred             CceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecC-CCcceeEEEeCCccceEE
Confidence            4688999995 55577888899999999999999888887 789999999999887653

>KOG1007|consensus

Probab=98.05  E-value=1.4e-05  Score=37.88  Aligned_cols=59  Identities=24%  Similarity=0.367  Sum_probs=46.7

Q ss_pred             ccceEEEEECC--CCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           5 RAYGLHCVFSP--DCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         5 ~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +-..+.-.|+|  +++.+++ ..++.+..||+++......+...|...|..+.|+|+-..++
T Consensus       170 ~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~l  230 (370)
T KOG1007|consen  170 RHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHIL  230 (370)
T ss_pred             cceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEE
Confidence            34566777887  6677665 45789999999998888888777889999999999866553

>KOG0649|consensus

Probab=98.01  E-value=0.00014  Score=34.02  Aligned_cols=49  Identities=14%  Similarity=0.024  Sum_probs=42.0

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEE
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAF   56 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   56 (65)
                      .|.+....|..+-++.++.|+.++.|++.+++..+.+.+ |.+-++++.-
T Consensus       116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG-HtDYvH~vv~  164 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRG-HTDYVHSVVG  164 (325)
T ss_pred             ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcC-Ccceeeeeee
Confidence            467777888777677777899999999999999999999 8999988876

>KOG1036|consensus

Probab=97.99  E-value=8.5e-05  Score=35.38  Aligned_cols=53  Identities=23%  Similarity=0.201  Sum_probs=39.5

Q ss_pred             ccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccC
Q psy7061           5 RAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD   59 (65)
Q Consensus         5 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   59 (65)
                      ...|..+.|+|.+..++.++.|+.+++|+.........+.  +..++.+++|.++
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d~   65 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFADE   65 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccCC
Confidence            3468899999877777778899999999988664443343  5677777777664

>KOG4497|consensus

Probab=97.98  E-value=7.9e-05  Score=36.14  Aligned_cols=57  Identities=12%  Similarity=0.184  Sum_probs=45.1

Q ss_pred             ceEEEEECCCCCE-EEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRL-LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .|..+.|..++.. ++....++.+.+|++.-.+-.-.+.. ...+....+|+|+|+.|+
T Consensus        50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde-g~agls~~~WSPdgrhiL  107 (447)
T KOG4497|consen   50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE-GQAGLSSISWSPDGRHIL  107 (447)
T ss_pred             HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc-CCCcceeeeECCCcceEe
Confidence            4667888887765 55666788999999986666666666 788999999999998765

>KOG0322|consensus

Probab=97.98  E-value=8.7e-06  Score=38.09  Aligned_cols=34  Identities=35%  Similarity=0.616  Sum_probs=30.8

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEEC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNT   34 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~   34 (65)
                      |+-|...+.+++|+|+.+.++.++.|.++.+|++
T Consensus       289 LkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  289 LKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            4558899999999999999999999999999986

>KOG2041|consensus

Probab=97.97  E-value=1.9e-05  Score=41.56  Aligned_cols=64  Identities=17%  Similarity=0.219  Sum_probs=51.3

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEee-ccCCCcEeEEEEccCCcEEe
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELG-TANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~i~   64 (65)
                      |.||.+.|..+.|....+++.++..+|.+.+|-+-.+.-..... ......|.+++|+.+|+.|.
T Consensus        67 LeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIc  131 (1189)
T KOG2041|consen   67 LEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKIC  131 (1189)
T ss_pred             hccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEE
Confidence            57899999999999888899999999999999987665433322 22467889999999998774

>KOG1409|consensus

Probab=97.93  E-value=3.7e-05  Score=37.20  Aligned_cols=53  Identities=19%  Similarity=0.218  Sum_probs=39.9

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceE-EEeeccCCCcEeEEE
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLV-RELGTANQRWVWDAA   55 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~   55 (65)
                      .+|.+.+.+..|.+....+.++..+..+.+|++-..+.+ ..+.+ |...|..++
T Consensus       194 ~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g-h~~kV~~l~  247 (404)
T KOG1409|consen  194 NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG-HNDKVQALS  247 (404)
T ss_pred             cCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc-chhhhhhhh
Confidence            578899999999998889999999999999998744332 23444 555555433

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.93  E-value=0.00016  Score=35.82  Aligned_cols=55  Identities=25%  Similarity=0.208  Sum_probs=37.4

Q ss_pred             eEEEEECCCCCEEE-EecCCC--cEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           8 GLHCVFSPDCRLLA-TTSADQ--TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         8 v~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .....|+|+++.++ +.+.++  .+++|++.++... .+.. +.......+|+|+++.++
T Consensus       250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~-~~~~~~~~~~spDG~~l~  307 (433)
T PRK04922        250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTN-HFGIDTEPTWAPDGKSIY  307 (433)
T ss_pred             ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECcc-CCCCccceEECCCCCEEE
Confidence            34678999998764 444444  5888898876643 3433 444456789999998775

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.88  E-value=0.00031  Score=34.71  Aligned_cols=55  Identities=18%  Similarity=0.135  Sum_probs=37.0

Q ss_pred             eEEEEECCCCCEEE-EecCCC--cEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           8 GLHCVFSPDCRLLA-TTSADQ--TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         8 v~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .....|+|+++.++ +...++  .+++++++++... .+.. +........|+|+++.++
T Consensus       245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~-~~~~~~~~~~spDg~~i~  302 (430)
T PRK00178        245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTN-HPAIDTEPFWGKDGRTLY  302 (430)
T ss_pred             cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-Eccc-CCCCcCCeEECCCCCEEE
Confidence            44678999998765 444444  5777888876543 3333 445566788999998764

>KOG2315|consensus

Probab=97.86  E-value=0.00018  Score=36.66  Aligned_cols=55  Identities=13%  Similarity=0.289  Sum_probs=41.7

Q ss_pred             eEEEEECCCCCEEEEecC---CCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           8 GLHCVFSPDCRLLATTSA---DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      -..+-|+|.|+.++.++-   .|.+-+||..+.+.+..+..   ....-+.|+|+|.+++|
T Consensus       314 RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a---~~tt~~eW~PdGe~flT  371 (566)
T KOG2315|consen  314 RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA---ANTTVFEWSPDGEYFLT  371 (566)
T ss_pred             ccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc---CCceEEEEcCCCcEEEE
Confidence            346778999997765553   57899999998777766664   34567899999999875

>KOG3914|consensus

Probab=97.85  E-value=9.6e-05  Score=36.16  Aligned_cols=60  Identities=17%  Similarity=0.210  Sum_probs=47.9

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCc
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK   61 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   61 (65)
                      .||-.-++.+.++||++.++++..|..+++-.+...-.+..+--+|..-|..++.-++..
T Consensus       148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~  207 (390)
T KOG3914|consen  148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL  207 (390)
T ss_pred             hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce
Confidence            367778999999999999999999999999887766555555433888888888776654

>KOG2106|consensus

Probab=97.84  E-value=0.00072  Score=34.61  Aligned_cols=56  Identities=14%  Similarity=0.267  Sum_probs=47.7

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      ..|.++.|.+++. ++++..++.+.+|+....+..++... |..+|.+++.-.+|+.+
T Consensus       247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~a-H~ggv~~L~~lr~Gtll  302 (626)
T KOG2106|consen  247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHA-HDGGVFSLCMLRDGTLL  302 (626)
T ss_pred             eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeee-cCCceEEEEEecCccEe
Confidence            4688999999887 67789999999999988777777775 99999999988888765

>KOG3881|consensus

Probab=97.80  E-value=0.00026  Score=34.81  Aligned_cols=59  Identities=8%  Similarity=-0.031  Sum_probs=50.2

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEE-eeccCCCcEeEEEEccCCcEEeC
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRE-LGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ..+.++...|+++.+.++...+.+..||.+.+..... +.+ -.+.+.++..+|...++++
T Consensus       248 ~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg-~tGsirsih~hp~~~~las  307 (412)
T KOG3881|consen  248 NPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG-ITGSIRSIHCHPTHPVLAS  307 (412)
T ss_pred             CcceeeeecCCCcEEEEecccchhheecccCceeeccccCC-ccCCcceEEEcCCCceEEe
Confidence            3567777888999999999999999999999988877 555 7888999999999888764

>KOG4640|consensus

Probab=97.78  E-value=0.00033  Score=36.39  Aligned_cols=56  Identities=18%  Similarity=0.096  Sum_probs=43.8

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEe-EEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVW-DAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~i~   64 (65)
                      .+..+.|+|....++.+..++.+-+.+....+.. ++.. +...+. +++|.|+|+.++
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlw-tip~-p~~~v~~sL~W~~DGklla   78 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLW-TIPI-PGENVTASLCWRPDGKLLA   78 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEeccceeE-eccC-CCCccceeeeecCCCCEEE
Confidence            4678899999899999999999999888744443 4443 444455 999999999886

>KOG2048|consensus

Probab=97.78  E-value=0.00079  Score=35.25  Aligned_cols=58  Identities=16%  Similarity=0.252  Sum_probs=46.6

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEE-EeeccCCCcEeEEEEccCCcEE
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVR-ELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      ..|.+++|+.+++.++.+..++.+.+|++....... .+.++....+-.++|++.++.+
T Consensus        26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLF   84 (691)
T KOG2048|consen   26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLF   84 (691)
T ss_pred             cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEE
Confidence            468899999999889999999999999999765543 3444456888999999877654

>KOG0280|consensus

Probab=97.78  E-value=0.00054  Score=32.82  Aligned_cols=62  Identities=13%  Similarity=0.142  Sum_probs=43.8

Q ss_pred             CccccceEEEEECCC-CCEEEEecCCCcEEEEECC-CCceEEE-eeccCCCcEeEEEEccC-CcEEe
Q psy7061           2 AAHRAYGLHCVFSPD-CRLLATTSADQTARIWNTE-DFSLVRE-LGTANQRWVWDAAFTLD-SKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~v~~~~~~~~-~~~i~   64 (65)
                      +.|......+.|+.. .+.+.+|+.|+.+..||++ .++.+.. ... |..+|.++.-+|. ..+|+
T Consensus       162 k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kv-H~~GV~SI~ss~~~~~~I~  227 (339)
T KOG0280|consen  162 KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKV-HTSGVVSIYSSPPKPTYIA  227 (339)
T ss_pred             cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeeccee-eecceEEEecCCCCCceEE
Confidence            457777777888763 4688999999999999999 3333333 233 7788888887764 55554

>KOG4547|consensus

Probab=97.73  E-value=0.00064  Score=34.83  Aligned_cols=60  Identities=15%  Similarity=0.082  Sum_probs=51.5

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      |-+.|..+.++.+-..+-+++.+..+..|+......+..... ....+.+++.+|++..++
T Consensus       101 h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~-~~~~~~sl~is~D~~~l~  160 (541)
T KOG4547|consen  101 HYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE-QKPLVSSLCISPDGKILL  160 (541)
T ss_pred             CCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc-CCCccceEEEcCCCCEEE
Confidence            566777777777777888999999999999999999988888 788899999999988775

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.72  E-value=0.0007  Score=33.95  Aligned_cols=54  Identities=22%  Similarity=0.209  Sum_probs=36.3

Q ss_pred             EEEEECCCCCEEEE-ecCCCc--EEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           9 LHCVFSPDCRLLAT-TSADQT--ARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         9 ~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ....|+|+++.++. ...++.  ++++++.++... .+.. +.......+|+|+++.++
T Consensus       265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~-~~~~~~~p~wSpDG~~I~  321 (448)
T PRK04792        265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITR-HRAIDTEPSWHPDGKSLI  321 (448)
T ss_pred             CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECcc-CCCCccceEECCCCCEEE
Confidence            45789999987654 444554  677777766543 3333 444567789999998775

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.70  E-value=0.0011  Score=32.60  Aligned_cols=55  Identities=15%  Similarity=0.179  Sum_probs=35.9

Q ss_pred             eEEEEECCCCCEEEEecC-CC--cEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           8 GLHCVFSPDCRLLATTSA-DQ--TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .....|+|+++.++..+. .+  .++++++..+... .+.. .........|+|++++++
T Consensus       280 ~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~-~~~~~~~~~~spdg~~i~  337 (417)
T TIGR02800       280 DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTF-RGGYNASPSWSPDGDLIA  337 (417)
T ss_pred             CCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec-CCCCccCeEECCCCCEEE
Confidence            345688999987765443 33  5777777765543 3333 345567788999998775

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.69  E-value=0.00064  Score=33.93  Aligned_cols=56  Identities=9%  Similarity=-0.122  Sum_probs=35.4

Q ss_pred             ceEEEEECCCCCE--E-EEecCCC--cEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRL--L-ATTSADQ--TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~--~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ......|+|+|+.  + ..+..++  .+++.++..+... .+.. ........+|+|+|+.|+
T Consensus       186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~-~~g~~~~p~wSPDG~~La  246 (428)
T PRK01029        186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILA-LQGNQLMPTFSPRKKLLA  246 (428)
T ss_pred             CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-Eeec-CCCCccceEECCCCCEEE
Confidence            4556789999864  2 2344443  4666677766543 3332 344556789999998875

>KOG0650|consensus

Probab=97.63  E-value=7.9e-05  Score=38.44  Aligned_cols=58  Identities=14%  Similarity=0.091  Sum_probs=45.1

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCC-CceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTED-FSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..|..++.+|.|..++.++.++.+..||++- .+...++.. |...+..++|++....++
T Consensus       608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~-H~~avr~Va~H~ryPLfa  666 (733)
T KOG0650|consen  608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL-HEKAVRSVAFHKRYPLFA  666 (733)
T ss_pred             eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh-hhhhhhhhhhccccceee
Confidence            4577889999998898999999999999984 455555666 788888888887655544

>KOG1334|consensus

Probab=97.62  E-value=6e-05  Score=37.92  Aligned_cols=57  Identities=16%  Similarity=0.153  Sum_probs=42.1

Q ss_pred             Ccccc--ceEEEE-ECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccC
Q psy7061           2 AAHRA--YGLHCV-FSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD   59 (65)
Q Consensus         2 ~~~~~--~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   59 (65)
                      ++|.+  .|..+- |.|..+++++|+..|.+.+|+-.+++.++.+.+ .+.-|+|+.=+|-
T Consensus       388 KGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg-Dr~VVNCLEpHP~  447 (559)
T KOG1334|consen  388 KGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG-DRHVVNCLEPHPH  447 (559)
T ss_pred             cccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc-ccceEeccCCCCC
Confidence            56665  466665 477889999999999999999888887776666 4446666555554

>KOG4640|consensus

Probab=97.61  E-value=0.00056  Score=35.62  Aligned_cols=53  Identities=17%  Similarity=0.117  Sum_probs=40.5

Q ss_pred             cceE-EEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEcc
Q psy7061           6 AYGL-HCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL   58 (65)
Q Consensus         6 ~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   58 (65)
                      ..+. +++|.|+|+.++.+-.||.+++.|...+..+..........+.++-|.+
T Consensus        62 ~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   62 ENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             CccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence            3444 8999999999999999999999999988777663322456666666653

>KOG1334|consensus

Probab=97.60  E-value=0.00012  Score=36.96  Aligned_cols=59  Identities=19%  Similarity=0.187  Sum_probs=47.7

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD   59 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   59 (65)
                      |.+|.+-|..+.|...|..+++++.+..+.+|+-..+.....+...|...|....|-|.
T Consensus       138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~  196 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPF  196 (559)
T ss_pred             ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCC
Confidence            46788999999999999999999999999999988776666665557777766666553

>KOG3881|consensus

Probab=97.60  E-value=0.001  Score=32.87  Aligned_cols=58  Identities=16%  Similarity=0.163  Sum_probs=46.6

Q ss_pred             ceEEEEECCC--CCEEEEecCCCcEEEEECCCC-ceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           7 YGLHCVFSPD--CRLLATTSADQTARIWNTEDF-SLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         7 ~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .++.+.|-++  ...++++..-+.+++||.+.+ +++.++.. ....+.++...|.+++|++
T Consensus       204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-~E~~is~~~l~p~gn~Iy~  264 (412)
T KOG3881|consen  204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF-LENPISSTGLTPSGNFIYT  264 (412)
T ss_pred             eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc-ccCcceeeeecCCCcEEEE
Confidence            4567788876  678999999999999999965 45556666 6788999999999988763

>KOG2321|consensus

Probab=97.59  E-value=0.0012  Score=34.32  Aligned_cols=53  Identities=8%  Similarity=-0.063  Sum_probs=41.5

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccC
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD   59 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   59 (65)
                      .|+++.|..+|-.++.|...|.+.+||++...++..-......++..+.|.+.
T Consensus       230 svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~  282 (703)
T KOG2321|consen  230 SVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT  282 (703)
T ss_pred             cceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence            48999999889899999999999999999777654433225567777777654

>KOG1240|consensus

Probab=97.58  E-value=0.0016  Score=36.54  Aligned_cols=62  Identities=15%  Similarity=0.205  Sum_probs=40.4

Q ss_pred             CccccceEEEEECCC-CCEEEEecCCCcEEEEECCCC-------ceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPD-CRLLATTSADQTARIWNTEDF-------SLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..|...+..++.+++ +..+++++.||.|++|+.+..       +...++.. .+..+..+...+.+..++
T Consensus      1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred             hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cCCceEEEEeccCCCeEE
Confidence            456777777777664 589999999999999998731       11222222 345666666666665543

>KOG2079|consensus

Probab=97.55  E-value=0.0018  Score=35.85  Aligned_cols=41  Identities=15%  Similarity=0.296  Sum_probs=35.8

Q ss_pred             ccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeec
Q psy7061           5 RAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGT   45 (65)
Q Consensus         5 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   45 (65)
                      ++.|.+++|+.+|..++.|-.+|.|.+||...++.+..+..
T Consensus       130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e  170 (1206)
T KOG2079|consen  130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE  170 (1206)
T ss_pred             CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee
Confidence            45799999999999999999999999999998877766654

>KOG3914|consensus

Probab=97.55  E-value=0.00018  Score=35.31  Aligned_cols=42  Identities=21%  Similarity=0.386  Sum_probs=33.7

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEee
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELG   44 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   44 (65)
                      -||+..|..++..++ ..+++++.|+.+++|++.+++.+.++.
T Consensus       191 lGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  191 LGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             cccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcccccc
Confidence            368888888887764 558999999999999999888665443

>KOG1188|consensus

Probab=97.54  E-value=0.00095  Score=32.55  Aligned_cols=62  Identities=11%  Similarity=0.086  Sum_probs=38.0

Q ss_pred             CccccceEEEEECC--CCCEEEEecCCCcEEEEECCCCceEEEeec-cCC-CcEeEEEEccCCcEE
Q psy7061           2 AAHRAYGLHCVFSP--DCRLLATTSADQTARIWNTEDFSLVRELGT-ANQ-RWVWDAAFTLDSKFL   63 (65)
Q Consensus         2 ~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~i   63 (65)
                      +++...+..+.|..  ....+.+++.||.|++||++.......+.. ++. ....+++.+-.+..+
T Consensus        67 k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii  132 (376)
T KOG1188|consen   67 KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNII  132 (376)
T ss_pred             cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeE
Confidence            34555566677755  346788999999999999997654444433 122 345555554344443

>KOG1587|consensus

Probab=97.52  E-value=0.0016  Score=33.79  Aligned_cols=55  Identities=18%  Similarity=0.154  Sum_probs=40.1

Q ss_pred             cceEEEEECC-CCCEEEEecCCCcEEEEECCCCce--EE---EeeccCCCcEeEEEEccCC
Q psy7061           6 AYGLHCVFSP-DCRLLATTSADQTARIWNTEDFSL--VR---ELGTANQRWVWDAAFTLDS   60 (65)
Q Consensus         6 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~v~~~~~~~~~   60 (65)
                      ..+.++.|+| +...++.|..+|.|.+|+++.+..  ..   .....|...+..+.|..+.
T Consensus       243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~  303 (555)
T KOG1587|consen  243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNE  303 (555)
T ss_pred             CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccC
Confidence            4688999999 457788888999999999985543  11   1112378888888886643

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.52  E-value=0.0012  Score=31.65  Aligned_cols=53  Identities=13%  Similarity=0.169  Sum_probs=35.2

Q ss_pred             EEEECCCCCEEEEec-CCCcEEEEECCCCc-e---EEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          10 HCVFSPDCRLLATTS-ADQTARIWNTEDFS-L---VRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        10 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~---~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+.++|+++++.++. .++.+.+|+++... .   +.....  ......++++|++++++
T Consensus       232 ~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~  289 (330)
T PRK11028        232 DIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLI  289 (330)
T ss_pred             eEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEE
Confidence            477899998877664 46789999886432 1   222221  23456788999998886

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.49  E-value=0.0021  Score=32.99  Aligned_cols=57  Identities=12%  Similarity=0.274  Sum_probs=42.8

Q ss_pred             cceEEEEECCCCCEEEEecCCC----cEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQ----TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +-|+...|+|++++++.+-.++    .++++++..++......  ....-.+.+|.|+++++.
T Consensus       444 ~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT--~ta~DfsPaFD~d~ryLY  504 (668)
T COG4946         444 GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT--PTAYDFSPAFDPDGRYLY  504 (668)
T ss_pred             ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC--CcccccCcccCCCCcEEE
Confidence            4688999999999999888765    47889988777654433  344456778888888763

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=97.48  E-value=0.0022  Score=30.45  Aligned_cols=60  Identities=37%  Similarity=0.501  Sum_probs=44.0

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCce-EEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSL-VRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +|.... ...|++++..+++++.++.+++|+...... ...... |...+..+.|+|++..++
T Consensus       240 ~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~  300 (466)
T COG2319         240 GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG-HSSSVLSVAFSPDGKLLA  300 (466)
T ss_pred             CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEec-CCccEEEEEECCCCCEEE
Confidence            344443 337889887788899999999999986554 444444 788999999999766654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.48  E-value=0.0029  Score=31.71  Aligned_cols=55  Identities=16%  Similarity=0.145  Sum_probs=34.6

Q ss_pred             eEEEEECCCCCEEE-EecCC--CcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           8 GLHCVFSPDCRLLA-TTSAD--QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         8 v~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .....|+|+++.++ +...+  ..++++++..+... .+.. .........|+|+|+.|+
T Consensus       235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~-~~~~d~~p~~SPDG~~I~  292 (419)
T PRK04043        235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITN-YPGIDVNGNFVEDDKRIV  292 (419)
T ss_pred             EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-Eccc-CCCccCccEECCCCCEEE
Confidence            44578999997654 33333  45777787766543 3333 333345678999998764

>KOG4227|consensus

Probab=97.46  E-value=0.0021  Score=32.25  Aligned_cols=61  Identities=16%  Similarity=0.084  Sum_probs=48.3

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeec-cCCCcEeEEEEccCCcEEe
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGT-ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~i~   64 (65)
                      |...|.++.|.....++.++..++.|.+.++.+...+..+.. ..++.|..+.-+|....++
T Consensus       104 H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~  165 (609)
T KOG4227|consen  104 HRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLI  165 (609)
T ss_pred             cccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEE
Confidence            667899999998888999999999999999998887776653 1345788888888755544

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.43  E-value=0.0034  Score=31.46  Aligned_cols=56  Identities=14%  Similarity=0.009  Sum_probs=37.6

Q ss_pred             ceEEEEECCCCCE-EEEecC---CCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRL-LATTSA---DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ......|+|+++. ++..+.   +..++++++.+++..... . .........|+|+++.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~-~~g~~~~~~~SPDG~~la  248 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-S-SQGMLVVSDVSKDGSKLL  248 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-c-CCCcEEeeEECCCCCEEE
Confidence            4567899999974 543332   345888888776654333 3 355566788999998775

>KOG4532|consensus

Probab=97.39  E-value=0.003  Score=30.26  Aligned_cols=54  Identities=17%  Similarity=0.158  Sum_probs=39.3

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceE----EEeeccCCCcEeEEEEccCC
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLV----RELGTANQRWVWDAAFTLDS   60 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~   60 (65)
                      .-.+..|+.....++.+..|+.+.+||++.....    .....+|.+.+..+.|++-+
T Consensus       205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g  262 (344)
T KOG4532|consen  205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYG  262 (344)
T ss_pred             CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCC
Confidence            3456778877788999999999999999854322    12222478889999998744

>KOG1587|consensus

Probab=97.36  E-value=0.0013  Score=34.11  Aligned_cols=59  Identities=20%  Similarity=0.170  Sum_probs=45.1

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECC-CCceEEEeeccCCCcEeEEEEccCCcE
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTE-DFSLVRELGTANQRWVWDAAFTLDSKF   62 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~   62 (65)
                      .|.+.|..+.++|=+..++....|-.+++|... ...++..+.. +...+.+++|||.-.-
T Consensus       396 ~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~-~~~~v~~vaWSptrpa  455 (555)
T KOG1587|consen  396 THIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS-SPDYVTDVAWSPTRPA  455 (555)
T ss_pred             ccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh-ccceeeeeEEcCcCce
Confidence            367789999999977655555559999999987 6666666666 6677999999997543

>KOG2111|consensus

Probab=97.36  E-value=0.0011  Score=32.06  Aligned_cols=31  Identities=32%  Similarity=0.372  Sum_probs=28.5

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCC
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTED   36 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~   36 (65)
                      ..++++.|+|++.+++.++..+.+.+|.++.
T Consensus       227 A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  227 ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             heEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            4799999999999999999999999998874

>KOG2314|consensus

Probab=97.35  E-value=0.0013  Score=34.18  Aligned_cols=57  Identities=11%  Similarity=0.210  Sum_probs=40.1

Q ss_pred             eEEEEECCCCCEEEEecC---CCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           8 GLHCVFSPDCRLLATTSA---DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ...+.|+|.|++++.++.   .+.+.++|.+.......-.. .......+.|.|.|+++.|
T Consensus       495 ~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~-eh~~at~veWDPtGRYvvT  554 (698)
T KOG2314|consen  495 ANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP-EHFAATEVEWDPTGRYVVT  554 (698)
T ss_pred             cceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCc-cccccccceECCCCCEEEE
Confidence            456889999998766543   57789998874333322222 3456788999999999874

>KOG4190|consensus

Probab=97.34  E-value=0.00027  Score=36.64  Aligned_cols=62  Identities=13%  Similarity=0.160  Sum_probs=42.8

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCC-Cc------eEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTED-FS------LVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+|+++|..+.--.+.+-+++++.|..|++|.++. +.      +..++.. |...++++.|-.+-++++
T Consensus       732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a-Hkk~i~~igfL~~lr~i~  800 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA-HKKPIHDIGFLADLRSIA  800 (1034)
T ss_pred             cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhh-ccCcccceeeeeccceee
Confidence            46777766655444566788999999999999873 22      3334445 788888887766665554

>KOG0280|consensus

Probab=97.29  E-value=0.0027  Score=30.63  Aligned_cols=54  Identities=20%  Similarity=0.138  Sum_probs=41.2

Q ss_pred             cccceEEEEECC-CCCEEEEecCCCcEEEEECC-CCceEEEeeccCCCcEeEEEEccC
Q psy7061           4 HRAYGLHCVFSP-DCRLLATTSADQTARIWNTE-DFSLVRELGTANQRWVWDAAFTLD   59 (65)
Q Consensus         4 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~   59 (65)
                      |...|.++.=+| .+..+++|+.|..+++||.+ .++++..-.  -.++|+.+.++|.
T Consensus       209 H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  209 HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPE  264 (339)
T ss_pred             eecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc--cccceEEEEecch
Confidence            666777777666 45689999999999999998 455554433  4588999998885

>KOG4714|consensus

Probab=97.28  E-value=0.00012  Score=34.51  Aligned_cols=52  Identities=15%  Similarity=0.326  Sum_probs=38.7

Q ss_pred             eEEEEECCCC-CEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccC
Q psy7061           8 GLHCVFSPDC-RLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD   59 (65)
Q Consensus         8 v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   59 (65)
                      +.+++-+|.. +.++.++.++.+.+|+.+.......+...|+..++.+.|+|.
T Consensus       182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk  234 (319)
T KOG4714|consen  182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK  234 (319)
T ss_pred             chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC
Confidence            6667777854 567888899999999998765444443347888888888874

>KOG3621|consensus

Probab=97.27  E-value=0.00097  Score=35.16  Aligned_cols=59  Identities=10%  Similarity=-0.011  Sum_probs=42.3

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEE----E-eeccCCCcEeEEEEccCCcEEeC
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVR----E-LGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+.....++...+++.++..+.|.++.+.......    . ....|...|++++|+++++.+++
T Consensus        78 ~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ys  141 (726)
T KOG3621|consen   78 ITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYS  141 (726)
T ss_pred             eEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEee
Confidence            45556677777888888899999999876532211    1 11136899999999999998764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.25  E-value=0.0023  Score=30.44  Aligned_cols=40  Identities=23%  Similarity=0.325  Sum_probs=34.0

Q ss_pred             ccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEee
Q psy7061           5 RAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELG   44 (65)
Q Consensus         5 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   44 (65)
                      ...|..+..+|++..+++...+|.+.+|++.+-+......
T Consensus       229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            3468899999999999999999999999998776665554

>KOG1832|consensus

Probab=97.23  E-value=0.0027  Score=35.05  Aligned_cols=60  Identities=20%  Similarity=0.089  Sum_probs=47.6

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      .|....+++.|+-+.+.++.|...|.+++++..+|........ |...+..+.=+.+|..+
T Consensus      1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc-H~SavT~vePs~dgs~~ 1158 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC-HQSAVTLVEPSVDGSTQ 1158 (1516)
T ss_pred             ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccc-cccccccccccCCccee
Confidence            4566788999999889999999999999999999887777777 77777666555555544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.22  E-value=0.0097  Score=32.87  Aligned_cols=57  Identities=12%  Similarity=0.177  Sum_probs=41.5

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEE----ECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIW----NTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..|..+.|.++...++.+..+|.+.+.    +... ..+..... -..++.+++||||+..++
T Consensus        76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~-~~~E~VG~-vd~GI~a~~WSPD~Ella  136 (928)
T PF04762_consen   76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDE-DEIEIVGS-VDSGILAASWSPDEELLA  136 (928)
T ss_pred             CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC-ceeEEEEE-EcCcEEEEEECCCcCEEE
Confidence            468889999988888888888888888    3332 22222222 467899999999998775

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.21  E-value=0.0045  Score=33.52  Aligned_cols=46  Identities=17%  Similarity=0.150  Sum_probs=35.2

Q ss_pred             CEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          18 RLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      -.++.|+.+|.+++|+-...+.-..+.+ -..+|..+..+.+|++|+
T Consensus       589 G~iavgs~~G~IRLyd~~g~~AKT~lp~-lG~pI~~iDvt~DGkwil  634 (794)
T PF08553_consen  589 GYIAVGSNKGDIRLYDRLGKRAKTALPG-LGDPIIGIDVTADGKWIL  634 (794)
T ss_pred             ceEEEEeCCCcEEeecccchhhhhcCCC-CCCCeeEEEecCCCcEEE
Confidence            3588899999999998543333333444 678999999999999986

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.17  E-value=0.0066  Score=29.43  Aligned_cols=53  Identities=25%  Similarity=0.342  Sum_probs=41.2

Q ss_pred             EEECCCCCEEEEecC-----CCcEEEEECC-CCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          11 CVFSPDCRLLATTSA-----DQTARIWNTE-DFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        11 ~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..|+++|+++.+.-+     .+.+-+|+.. ....+..+.. +.-.-+.+.+.|+++.++
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s-~GIGPHel~l~pDG~tLv  114 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPS-HGIGPHELLLMPDGETLV  114 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecC-CCcChhhEEEcCCCCEEE
Confidence            578999998877654     3568899998 6677777777 777788999999996554

>KOG1310|consensus

Probab=97.17  E-value=0.0032  Score=32.87  Aligned_cols=56  Identities=16%  Similarity=0.019  Sum_probs=45.3

Q ss_pred             eEEEEECC-CCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           8 GLHCVFSP-DCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         8 v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      |..+.|-- .++.+++|+.|+...+|+-.++.....+.+ ....+.++.-+|....++
T Consensus       626 IKeanFlGqrgeyiasgSddgr~fiwek~tg~i~av~~g-dssivnciqghP~~~~la  682 (758)
T KOG1310|consen  626 IKEANFLGQRGEYIASGSDDGRFFIWEKLTGSILAVIHG-DSSIVNCIQGHPRCPTLA  682 (758)
T ss_pred             cccccccccCCCeeeEecCCCceEEeecCCcceEEEeeC-chhheeeccCCCCCceee
Confidence            44555533 578999999999999999999999888888 778888888888775554

>KOG1240|consensus

Probab=97.17  E-value=0.0063  Score=34.48  Aligned_cols=56  Identities=9%  Similarity=0.090  Sum_probs=45.1

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccC
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD   59 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   59 (65)
                      ..+.|+++..+|.++|++.|...|.+-+||++=+..+.....++...+..+..+|.
T Consensus      1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~ 1249 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPT 1249 (1431)
T ss_pred             cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeecc
Confidence            34679999999999999999999999999999777777776545566666666654

>KOG4714|consensus

Probab=97.16  E-value=0.00033  Score=33.08  Aligned_cols=36  Identities=28%  Similarity=0.387  Sum_probs=30.4

Q ss_pred             CCccccceEEEEECC-CCCEEEEecCCCcEEEEECCC
Q psy7061           1 MAAHRAYGLHCVFSP-DCRLLATTSADQTARIWNTED   36 (65)
Q Consensus         1 l~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   36 (65)
                      |+.|...+..+-|+| ++..+++++++|.+..|+..+
T Consensus       219 l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  219 LKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             HHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            346788889999999 467899999999999999763

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.14  E-value=0.0052  Score=30.02  Aligned_cols=58  Identities=16%  Similarity=0.089  Sum_probs=36.9

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccC----------------CCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTAN----------------QRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~i~   64 (65)
                      ..+....|+|+|+.++... ++.+++.+...+........+.                -..-..+-|+|++++|+
T Consensus        43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la  116 (353)
T PF00930_consen   43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLA  116 (353)
T ss_dssp             TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEE
T ss_pred             cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEE
Confidence            3567889999999887765 5788998877664443322210                01224688999999886

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2066|consensus

Probab=97.13  E-value=0.009  Score=32.36  Aligned_cols=42  Identities=17%  Similarity=0.063  Sum_probs=35.5

Q ss_pred             CCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccC
Q psy7061          16 DCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD   59 (65)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   59 (65)
                      +|..+++++.||.+.+..+.+.+...+..  ...++.+++++|+
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d--f~rpiksial~Pd  123 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYD--FKRPIKSIALHPD  123 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEe--cCCcceeEEeccc
Confidence            48899999999999999988888776666  4677888899887

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.10  E-value=0.0079  Score=28.92  Aligned_cols=56  Identities=20%  Similarity=0.096  Sum_probs=37.0

Q ss_pred             ceEEEEECCCCCEEEEe-cCCCcEEEEECCC-Cce--EEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATT-SADQTARIWNTED-FSL--VRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ....+.++|+++.+..+ ..++.+..|+++. +..  .....  .......++++|+++.++
T Consensus        36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~   95 (330)
T PRK11028         36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLF   95 (330)
T ss_pred             CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEE
Confidence            45667889999876544 4578888898863 322  12222  233567899999998775

>KOG0321|consensus

Probab=97.04  E-value=0.00066  Score=35.48  Aligned_cols=35  Identities=17%  Similarity=0.255  Sum_probs=30.6

Q ss_pred             CccccceEEEEECCC-CCEEEEecCCCcEEEEECCC
Q psy7061           2 AAHRAYGLHCVFSPD-CRLLATTSADQTARIWNTED   36 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   36 (65)
                      .+|.+.+-.++|.+. ...+++|+.|+.+.+||++.
T Consensus       141 ~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~  176 (720)
T KOG0321|consen  141 LGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRC  176 (720)
T ss_pred             cccccccchhhhccCCCcceeeccCCCcEEEEEEec
Confidence            479999999999995 46789999999999999873

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.01  E-value=0.0026  Score=32.02  Aligned_cols=54  Identities=19%  Similarity=0.172  Sum_probs=34.1

Q ss_pred             EEEEECCCCCEE-EEecCCCc--EEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           9 LHCVFSPDCRLL-ATTSADQT--ARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         9 ~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ....|+|+|+++ ++...++.  ++++++...... .+.. ....-..-.|+|+|++|+
T Consensus       241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~-~~gi~~~Ps~spdG~~iv  297 (425)
T COG0823         241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTN-GFGINTSPSWSPDGSKIV  297 (425)
T ss_pred             CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-eccc-CCccccCccCCCCCCEEE
Confidence            346789999865 44445554  566676655533 3443 333344888999999885

>KOG2321|consensus

Probab=96.96  E-value=0.012  Score=31.04  Aligned_cols=58  Identities=21%  Similarity=0.194  Sum_probs=41.4

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeec-----cCC-----CcEeEEEEccCCcEE
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGT-----ANQ-----RWVWDAAFTLDSKFL   63 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~v~~~~~~~~~~~i   63 (65)
                      +.+..+..++.-.++++|..++.|.+||.++......+..     .+.     ..|..+.|+.+|-.+
T Consensus       176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~  243 (703)
T KOG2321|consen  176 GELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHV  243 (703)
T ss_pred             ccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeE
Confidence            5677888888767788888999999999987655544432     012     347888888766544

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=96.88  E-value=0.015  Score=28.65  Aligned_cols=57  Identities=16%  Similarity=0.167  Sum_probs=40.4

Q ss_pred             eEEEEECCCCCEEEEecC-CCcEEEEECCCCceEEEeec--cCCCcEeEEEEccCCcEEe
Q psy7061           8 GLHCVFSPDCRLLATTSA-DQTARIWNTEDFSLVRELGT--ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~i~   64 (65)
                      +-...+.|+++.+++... -.++.+|++..+.....-..  ....+-..+.|+|+++++.
T Consensus       147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY  206 (346)
T COG2706         147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAY  206 (346)
T ss_pred             cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEE
Confidence            556778999988877764 46799999986654222111  2567778999999998764

>KOG1517|consensus

Probab=96.87  E-value=0.013  Score=33.04  Aligned_cols=64  Identities=9%  Similarity=0.005  Sum_probs=43.3

Q ss_pred             Cccccc--eEEEEECCCC-CEEEEecCCCcEEEEECCCCceEE--Eeecc--CCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAY--GLHCVFSPDC-RLLATTSADQTARIWNTEDFSLVR--ELGTA--NQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~--v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~v~~~~~~~~~~~i~s   65 (65)
                      +.|+..  |..+.+.+.| ..+++++.+|.+++||++......  ....+  .....+++..++....|+|
T Consensus      1251 R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAs 1321 (1387)
T KOG1517|consen 1251 REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIAS 1321 (1387)
T ss_pred             cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeee
Confidence            346665  8899998866 369999999999999999632211  22220  1224778888887777764

>KOG2314|consensus

Probab=96.85  E-value=0.015  Score=30.56  Aligned_cols=58  Identities=22%  Similarity=0.164  Sum_probs=41.7

Q ss_pred             ceEEEEECCCCCEEEEecC-----------CCcEEEEECCCCceEEEeec--cCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSA-----------DQTARIWNTEDFSLVRELGT--ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+..++|+|..+++++-+.           ...+.+||+.+|...+.+..  .....-.-+.||.+.++++
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~A  321 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFA  321 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeE
Confidence            5778899998888877543           25699999999987666654  1223334678888888875

>KOG1645|consensus

Probab=96.85  E-value=0.0061  Score=30.64  Aligned_cols=58  Identities=21%  Similarity=0.328  Sum_probs=45.0

Q ss_pred             ccccceEEEEECCCCC-EEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcE
Q psy7061           3 AHRAYGLHCVFSPDCR-LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF   62 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   62 (65)
                      ++...|..+.|+|..+ .+..++.+..+.+.++.+......+..  ...+++++|.-+...
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a--~~~~wSC~wDlde~h  249 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA--YNQIWSCCWDLDERH  249 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec--cCCceeeeeccCCcc
Confidence            3455678889999766 577788889999999998777767765  478999999876543

>KOG1354|consensus

Probab=96.83  E-value=0.00094  Score=32.79  Aligned_cols=59  Identities=19%  Similarity=0.333  Sum_probs=41.0

Q ss_pred             ceEEEEECCC-CCEEEEecCCCcEEEEECCCCc-------eEEEeecc--------CCCcEeEEEEccCCcEEeC
Q psy7061           7 YGLHCVFSPD-CRLLATTSADQTARIWNTEDFS-------LVRELGTA--------NQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         7 ~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~--------~~~~v~~~~~~~~~~~i~s   65 (65)
                      -|++..|+|. .+.++.++..|.+++.|++..-       .......+        --..|..+.|+++|+++++
T Consensus       215 VITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryils  289 (433)
T KOG1354|consen  215 VITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILS  289 (433)
T ss_pred             HHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEE
Confidence            4678889995 5788999999999999987321       11111110        1145678999999999875

>KOG3617|consensus

Probab=96.77  E-value=0.0011  Score=36.19  Aligned_cols=57  Identities=14%  Similarity=0.110  Sum_probs=43.0

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           8 GLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +++++|+|..-.++.+-+.+.+-+|...+.+.-..... |...+..+.|+++|.-+.|
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~t-h~a~i~~l~wS~~G~~l~t  118 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVET-HPAPIQGLDWSHDGTVLMT  118 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccC-CCCCceeEEecCCCCeEEE
Confidence            45678888766778888888888888765544434444 8999999999999987754

>KOG2315|consensus

Probab=96.73  E-value=0.027  Score=29.45  Aligned_cols=56  Identities=16%  Similarity=0.077  Sum_probs=40.9

Q ss_pred             ccceEEEEECCCCCE--EEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           5 RAYGLHCVFSPDCRL--LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         5 ~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+.|.++.|++++..  ++.|-.-..+.+|+++ +..+..+.   .+..+.+-|+|.|++|+
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~---egpRN~~~fnp~g~ii~  327 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP---EGPRNTAFFNPHGNIIL  327 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC---CCCccceEECCCCCEEE
Confidence            468999999999865  4556667788899987 44444443   45667888899998875

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=96.73  E-value=0.0096  Score=32.89  Aligned_cols=57  Identities=11%  Similarity=0.107  Sum_probs=37.8

Q ss_pred             ceEEEEECCCCCEEEEecC------CCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           7 YGLHCVFSPDCRLLATTSA------DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .-..++|-.||++++..+.      ...+++|+-. |........ -.+--..++|.|.|..|++
T Consensus       211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~-v~gLe~~l~WrPsG~lIA~  273 (928)
T PF04762_consen  211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP-VDGLEGALSWRPSGNLIAS  273 (928)
T ss_pred             CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc-CCCccCCccCCCCCCEEEE
Confidence            4567889999998776654      2457788744 443333332 3344467899999998874

>KOG1064|consensus

Probab=96.70  E-value=0.0041  Score=36.65  Aligned_cols=36  Identities=11%  Similarity=0.224  Sum_probs=31.8

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCc
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFS   38 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   38 (65)
                      .|.+.++.+.+.|..+.+++|+.+|.+++||++...
T Consensus      2334 ~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2334 CHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred             ecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH
Confidence            477889999999999999999999999999987543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=96.68  E-value=0.024  Score=29.66  Aligned_cols=28  Identities=11%  Similarity=0.210  Sum_probs=25.6

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECC
Q psy7061           8 GLHCVFSPDCRLLATTSADQTARIWNTE   35 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~~~~~~~~~~~   35 (65)
                      +..++|+|+|..++.++..|.+.+||+.
T Consensus       302 P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  302 PTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             ceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            5678999999999999999999999976

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.48  E-value=0.035  Score=27.61  Aligned_cols=55  Identities=9%  Similarity=0.039  Sum_probs=40.5

Q ss_pred             eEEEEECCCCCEEEE-ec---------CCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCc-EEe
Q psy7061           8 GLHCVFSPDCRLLAT-TS---------ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK-FLL   64 (65)
Q Consensus         8 v~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~i~   64 (65)
                      ...+.++++++.+.. ..         ....+.++|..+.+.+..+..  ...+..++++|+++ .++
T Consensus       250 ~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v--G~~~~~iavS~Dgkp~ly  315 (352)
T TIGR02658       250 WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL--GHEIDSINVSQDAKPLLY  315 (352)
T ss_pred             ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC--CCceeeEEECCCCCeEEE
Confidence            334788888876554 31         124688889988888888774  56899999999999 553

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=96.46  E-value=0.019  Score=28.49  Aligned_cols=55  Identities=18%  Similarity=0.286  Sum_probs=33.9

Q ss_pred             EEEEECCCCCEEEEe----cCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061           9 LHCVFSPDCRLLATT----SADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         9 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      ..+.-+|+++++...    .....+.++|.++.+.+..+.......+..+.|+++|+.+
T Consensus       272 lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v  330 (369)
T PF02239_consen  272 LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEV  330 (369)
T ss_dssp             --EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEE
T ss_pred             ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEE
Confidence            556779999887655    3457899999998877766653233458999999999876

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=96.41  E-value=0.037  Score=27.11  Aligned_cols=57  Identities=21%  Similarity=0.377  Sum_probs=36.8

Q ss_pred             ceEEEEECCCCCEEEEec-CCCcEEEEECCC--Cce--EEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTS-ADQTARIWNTED--FSL--VRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ....+.++|+++++..+. ....+.+|+++.  +..  +..... ....-..++++|++++++
T Consensus       246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-~G~~Pr~~~~s~~g~~l~  307 (345)
T PF10282_consen  246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-GGKFPRHFAFSPDGRYLY  307 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-SSSSEEEEEE-TTSSEEE
T ss_pred             CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-CCCCccEEEEeCCCCEEE
Confidence            466788999998765444 567799999842  332  222222 345578899999999886

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.40  E-value=0.016  Score=29.37  Aligned_cols=53  Identities=13%  Similarity=0.170  Sum_probs=31.1

Q ss_pred             EEEECCCCCEEEE-ecCCCcEEEE--ECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          10 HCVFSPDCRLLAT-TSADQTARIW--NTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        10 ~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .-.|+|+|++++. ....+...+|  +.+.... ..+.. ....-....|+|+|++|+
T Consensus       286 ~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~-~~~~~~~p~~SpdG~~i~  341 (425)
T COG0823         286 SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF-SGGGNSNPVWSPDGDKIV  341 (425)
T ss_pred             CccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec-cCCCCcCccCCCCCCEEE
Confidence            4578999987644 4455654554  5443333 22222 222233888899999886

>KOG2695|consensus

Probab=96.36  E-value=0.012  Score=29.24  Aligned_cols=42  Identities=7%  Similarity=0.044  Sum_probs=30.5

Q ss_pred             cccceEEEEECC-CCCEEEEecCCCcEEEEECCCCce---EEEeec
Q psy7061           4 HRAYGLHCVFSP-DCRLLATTSADQTARIWNTEDFSL---VRELGT   45 (65)
Q Consensus         4 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~   45 (65)
                      |...|+++..-. +++++.+++.++.+.+||++..+.   +.+..+
T Consensus       297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG  342 (425)
T KOG2695|consen  297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEG  342 (425)
T ss_pred             cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeec
Confidence            444566655444 567899999999999999986555   666665

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.29  E-value=0.048  Score=27.16  Aligned_cols=52  Identities=15%  Similarity=0.321  Sum_probs=37.2

Q ss_pred             ECCCCCEEEEe-c---------CCCcEEEEECCCCceEEEeeccC------CCcEeEEEEccCCcEEe
Q psy7061          13 FSPDCRLLATT-S---------ADQTARIWNTEDFSLVRELGTAN------QRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        13 ~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~i~   64 (65)
                      ++|+++.+..+ .         .+..|.+||..+.+.+..+..+.      ...-..++++|++++++
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~  120 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLL  120 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEE
Confidence            78988765444 4         47789999999998887776411      12234788899998875

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.26  E-value=0.044  Score=29.07  Aligned_cols=53  Identities=6%  Similarity=-0.127  Sum_probs=30.7

Q ss_pred             eEEEEECCCCCEEEEecCC------------CcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           8 GLHCVFSPDCRLLATTSAD------------QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .....|+|++..+......            +.+.+..++.+....   . ....+..++|+|+|..++
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~-~~g~Issl~wSpDG~RiA  463 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---R-VPGPISELQLSRDGVRAA  463 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---c-cCCCcCeEEECCCCCEEE
Confidence            5567889987755444322            122222333222211   2 345799999999999876

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=96.23  E-value=0.04  Score=25.62  Aligned_cols=46  Identities=15%  Similarity=0.291  Sum_probs=33.3

Q ss_pred             CEEEEecCCCcEEEEECC--CCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061          18 RLLATTSADQTARIWNTE--DFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ..+..+.....+.+|++.  .......+..  -+.|..+.++..|++++|
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T--v~~V~~l~y~~~GDYlvT   76 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST--VGRVLQLVYSEAGDYLVT   76 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc--hhheeEEEeccccceEEE
Confidence            445444667789999987  3344445553  588999999999999975

>KOG1409|consensus

Probab=96.21  E-value=0.018  Score=28.60  Aligned_cols=63  Identities=13%  Similarity=0.120  Sum_probs=41.7

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEEC-CCCceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNT-EDFSLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      ++||...+.....-|..+.+.+.+.+..+++|-- +.+..-..+.......+..+.++++.+.+
T Consensus        20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L   83 (404)
T KOG1409|consen   20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRL   83 (404)
T ss_pred             hcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEE
Confidence            3577778888888887788999999999999944 34443333322234556666666655444

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.19  E-value=0.075  Score=28.43  Aligned_cols=53  Identities=17%  Similarity=0.298  Sum_probs=29.5

Q ss_pred             EEEECCCCCEEEEecCCCcEEEEECC--CCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          10 HCVFSPDCRLLATTSADQTARIWNTE--DFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+.|+|....++.-.....--+++..  +.+....+ . ..+.|++.+|.+||+.++
T Consensus       117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~-~~G~IhCACWT~DG~RLV  171 (671)
T PF15390_consen  117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-K-TSGLIHCACWTKDGQRLV  171 (671)
T ss_pred             cccccCCCceEEEEecCceeEeeeeeeCCceEEEec-c-CCceEEEEEecCcCCEEE
Confidence            45677766554433332222233333  22222223 3 578899999999998765

>KOG0974|consensus

Probab=96.10  E-value=0.075  Score=29.77  Aligned_cols=59  Identities=20%  Similarity=0.411  Sum_probs=42.3

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +|+..+..+.+.|.  .+++.+.|...++|+.. +.....+..+....++.++..++...++
T Consensus       216 gHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~v  274 (967)
T KOG0974|consen  216 GHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKV  274 (967)
T ss_pred             cccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEE
Confidence            68899999999987  89999999999999654 3333344443446677777766655544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.07  E-value=0.061  Score=27.61  Aligned_cols=44  Identities=18%  Similarity=0.206  Sum_probs=29.2

Q ss_pred             CCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          17 CRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      |..++..+. +.+.+||..+++.+..+.. .  .|..+.|++++.+++
T Consensus       117 G~LL~~~~~-~~i~~yDw~~~~~i~~i~v-~--~vk~V~Ws~~g~~va  160 (443)
T PF04053_consen  117 GNLLGVKSS-DFICFYDWETGKLIRRIDV-S--AVKYVIWSDDGELVA  160 (443)
T ss_dssp             SSSEEEEET-TEEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEE
T ss_pred             CcEEEEECC-CCEEEEEhhHcceeeEEec-C--CCcEEEEECCCCEEE
Confidence            665555543 4799999999998888875 2  389999999988875

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1920|consensus

Probab=95.94  E-value=0.14  Score=29.53  Aligned_cols=57  Identities=16%  Similarity=0.173  Sum_probs=42.6

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..|.++.|..+.+.++.+...|.+.+.+..+... ..... -..+|.+++|+|++..++
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~-vd~GI~aaswS~Dee~l~  125 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGN-VDNGISAASWSPDEELLA  125 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccce-eeeee-ccCceEEEeecCCCcEEE
Confidence            4688889988888888888888888887664432 12222 467899999999998765

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=95.74  E-value=0.087  Score=25.50  Aligned_cols=29  Identities=31%  Similarity=0.505  Sum_probs=25.3

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCC
Q psy7061           8 GLHCVFSPDCRLLATTSADQTARIWNTED   36 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~   36 (65)
                      -..+.|+||+..++.+...+.+++|++-.
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g   74 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG   74 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence            34688999999999999999999999864

>KOG3617|consensus

Probab=95.72  E-value=0.042  Score=30.76  Aligned_cols=34  Identities=21%  Similarity=0.222  Sum_probs=30.8

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTED   36 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~   36 (65)
                      .|..++..+.|+++|..++++..-+.+.+|.++.
T Consensus        99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             CCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            4778999999999999999999999999998873

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=95.69  E-value=0.024  Score=18.62  Aligned_cols=18  Identities=17%  Similarity=0.183  Sum_probs=12.4

Q ss_pred             CCCcEeEEEEccCCcEEe
Q psy7061          47 NQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        47 ~~~~v~~~~~~~~~~~i~   64 (65)
                      ....-....|+|+|+.|+
T Consensus         7 ~~~~~~~p~~SpDGk~i~   24 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIY   24 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEE
T ss_pred             CCccccCEEEecCCCEEE
Confidence            345667888899988875

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=95.64  E-value=0.19  Score=28.69  Aligned_cols=57  Identities=11%  Similarity=0.110  Sum_probs=39.5

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeecc------------CCCcEeEEEEccCCcEEe
Q psy7061           8 GLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTA------------NQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~i~   64 (65)
                      ...+.+++++..+++-..++.|++|+..++.........            .-.....++++++|+.++
T Consensus       806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyV  874 (1057)
T PLN02919        806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFV  874 (1057)
T ss_pred             CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEE
Confidence            356778888888888888999999998866544322110            112456788899988665

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.61  E-value=0.11  Score=26.62  Aligned_cols=40  Identities=23%  Similarity=0.145  Sum_probs=33.0

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeec
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGT   45 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   45 (65)
                      ..+..+..+|.+++.+....-|+|.++|+..+..++.+.+
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG  347 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG  347 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc
Confidence            4577888999999888888889999999998877666654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.60  E-value=0.031  Score=19.34  Aligned_cols=31  Identities=29%  Similarity=0.354  Sum_probs=24.3

Q ss_pred             cceEEEEECCC-C--CEEEEecCCCcEEEEECCC
Q psy7061           6 AYGLHCVFSPD-C--RLLATTSADQTARIWNTED   36 (65)
Q Consensus         6 ~~v~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~   36 (65)
                      +.+-++.|+|+ +  ..++.+-..+.+.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            35678999984 3  4778887889999999984

It contains a characteristic DLL sequence motif.

>KOG2395|consensus

Probab=95.52  E-value=0.073  Score=28.16  Aligned_cols=47  Identities=15%  Similarity=0.133  Sum_probs=34.5

Q ss_pred             CCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          17 CRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .-.++.++.+|.+++|+-...+.-..+.+ -...|..+..+.+|++|+
T Consensus       441 sG~IvvgS~~GdIRLYdri~~~AKTAlPg-LG~~I~hVdvtadGKwil  487 (644)
T KOG2395|consen  441 SGYIVVGSLKGDIRLYDRIGRRAKTALPG-LGDAIKHVDVTADGKWIL  487 (644)
T ss_pred             CceEEEeecCCcEEeehhhhhhhhhcccc-cCCceeeEEeeccCcEEE
Confidence            34688899999999998643333333444 678888888888998876

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=95.47  E-value=0.12  Score=25.39  Aligned_cols=58  Identities=19%  Similarity=0.288  Sum_probs=39.1

Q ss_pred             ceEEEEECCCCCEEEEec-CCCcEEEEECCC-CceEEE---ee---------ccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTS-ADQTARIWNTED-FSLVRE---LG---------TANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~---~~---------~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+.+.++|+++.++.+. .++.+.++++.. +.....   ..         .+.....+++.++|++++++
T Consensus        88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~  159 (345)
T PF10282_consen   88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY  159 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred             CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence            456788899998776655 588999999986 332222   11         01346678999999999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2041|consensus

Probab=95.45  E-value=0.19  Score=27.93  Aligned_cols=58  Identities=10%  Similarity=0.036  Sum_probs=42.8

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCc----e-----------EEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFS----L-----------VRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----------~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ....++.|..+..+++.++.+|.+++..+.+..    .           -.++.+ |+..|.-+.|+.+.+.+.
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~QKLT   87 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQKLT   87 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEecccccccc
Confidence            467789999988999999999999998765321    1           112334 899999999988766543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=95.39  E-value=0.011  Score=29.07  Aligned_cols=59  Identities=14%  Similarity=0.273  Sum_probs=39.0

Q ss_pred             ceEEEEECCC-CCEEEEecCCCcEEEEECCCCc-------eEEE-eec-------cCCCcEeEEEEccCCcEEeC
Q psy7061           7 YGLHCVFSPD-CRLLATTSADQTARIWNTEDFS-------LVRE-LGT-------ANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         7 ~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~-------~~~~~v~~~~~~~~~~~i~s   65 (65)
                      -|++..|+|. ...+..++..|.+++-+++...       .... ..+       .--..+..+.|+++|++|++
T Consensus       223 VItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls  297 (460)
T COG5170         223 VITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS  297 (460)
T ss_pred             HHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE
Confidence            4677889995 4677788889999998887211       0000 000       01255678999999999874

>KOG4499|consensus

Probab=95.22  E-value=0.14  Score=24.59  Aligned_cols=43  Identities=12%  Similarity=0.081  Sum_probs=35.8

Q ss_pred             CCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEc
Q psy7061          14 SPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFT   57 (65)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   57 (65)
                      ..+|+..++.-+.+.|..+++.+++.+..+.- ....+.+++|-
T Consensus       220 D~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl-Pt~qitsccFg  262 (310)
T KOG4499|consen  220 DTEGNLYVATFNGGTVQKVDPTTGKILLEIKL-PTPQITSCCFG  262 (310)
T ss_pred             ccCCcEEEEEecCcEEEEECCCCCcEEEEEEc-CCCceEEEEec
Confidence            45677778888889999999999999888887 67788888883

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=95.21  E-value=0.17  Score=25.32  Aligned_cols=57  Identities=18%  Similarity=0.215  Sum_probs=37.5

Q ss_pred             eEEEEECCCCCEEEEec-CCCcEEEEECCC-CceEEE--eeccCCC----------cEeEEEEccCCcEEeC
Q psy7061           8 GLHCVFSPDCRLLATTS-ADQTARIWNTED-FSLVRE--LGTANQR----------WVWDAAFTLDSKFLLT   65 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~--~~~~~~~----------~v~~~~~~~~~~~i~s   65 (65)
                      .+.++.+++++.++++. ..+.+.++.++. +.....  ... |..          .++...++|+++++++
T Consensus        91 p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~-h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v  161 (346)
T COG2706          91 PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK-HTGSGPHERQESPHVHSANFTPDGRYLVV  161 (346)
T ss_pred             CeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeee-cCCCCCCccccCCccceeeeCCCCCEEEE
Confidence            36788888888776655 467888988864 322111  111 222          2888999999988763

>KOG3621|consensus

Probab=95.19  E-value=0.087  Score=28.57  Aligned_cols=33  Identities=9%  Similarity=0.045  Sum_probs=29.4

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCC
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTED   36 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~   36 (65)
                      |...|+++.|++++..+.+|...|.|.+-.++.
T Consensus       123 ~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  123 HKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            677899999999999999999999988877765

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.18  E-value=0.084  Score=26.02  Aligned_cols=36  Identities=17%  Similarity=0.165  Sum_probs=24.3

Q ss_pred             CcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          27 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +...++++.++.......  .........|+|+|+.++
T Consensus        23 ~~y~i~d~~~~~~~~l~~--~~~~~~~~~~sP~g~~~~   58 (353)
T PF00930_consen   23 GDYYIYDIETGEITPLTP--PPPKLQDAKWSPDGKYIA   58 (353)
T ss_dssp             EEEEEEETTTTEEEESS---EETTBSEEEE-SSSTEEE
T ss_pred             eeEEEEecCCCceEECcC--CccccccceeecCCCeeE
Confidence            357788888765543333  356788999999998875

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.00  E-value=0.15  Score=23.73  Aligned_cols=50  Identities=10%  Similarity=0.074  Sum_probs=34.2

Q ss_pred             CCCCEEEEecCCCcEEEEECCCCceEEEe------ec-------cCCCcEeEEEEccCCcEEe
Q psy7061          15 PDCRLLATTSADQTARIWNTEDFSLVREL------GT-------ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-------~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+++++.-..+|.+++||+...+.+...      ..       .....|..+..+.+|..++
T Consensus        20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV   82 (219)
T PF07569_consen   20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIV   82 (219)
T ss_pred             eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEE
Confidence            35778888899999999999976654332      11       1345667777777776654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=94.83  E-value=0.19  Score=26.48  Aligned_cols=56  Identities=21%  Similarity=0.306  Sum_probs=37.8

Q ss_pred             cceEEEEECCCCCEEEEecCCC---------------cEEEEECCCCceEEEeeccCCCc--Ee-EEEEccCCcE
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQ---------------TARIWNTEDFSLVRELGTANQRW--VW-DAAFTLDSKF   62 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~   62 (65)
                      ..|..++|+|.++++.+=....               .+.+||+.++..+..+.. -...  .+ -++|+-+.++
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~-~~q~~~~Wp~~k~s~~D~y  145 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNG-ISQPYLGWPVLKFSIDDKY  145 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccc-cCCcccccceeeeeecchh
Confidence            4677889999988887644322               488999999888887765 2222  23 5666655544

>KOG1912|consensus

Probab=94.78  E-value=0.14  Score=28.49  Aligned_cols=57  Identities=14%  Similarity=0.091  Sum_probs=41.9

Q ss_pred             CccccceEEEEECCCC------------CEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccC
Q psy7061           2 AAHRAYGLHCVFSPDC------------RLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD   59 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   59 (65)
                      +.|+..|+.+.|.|..            ..++++...|.+.+||...+..+..+.. +...+..++|-+.
T Consensus        52 e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~-~~~~~qdl~W~~~  120 (1062)
T KOG1912|consen   52 ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSH-SNDSVQDLCWVPA  120 (1062)
T ss_pred             ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcC-CCcchhheeeeec
Confidence            4577888999887632            1356666788999999887777766666 7788888888653

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.68  E-value=0.25  Score=24.81  Aligned_cols=54  Identities=20%  Similarity=0.151  Sum_probs=34.5

Q ss_pred             EEEEECCCCCEEEEe-cCCC----cEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           9 LHCVFSPDCRLLATT-SADQ----TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         9 ~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ....++|++++++.+ +..|    .++++++.+++.+.....  ......+.|.++++.++
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~--~~~~~~~~W~~d~~~~~  185 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE--NPKFSSVSWSDDGKGFF  185 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE--EEESEEEEECTTSSEEE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc--ccccceEEEeCCCCEEE
Confidence            357789999876543 3333    488999998876554322  11122389999877653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=94.68  E-value=0.3  Score=25.63  Aligned_cols=36  Identities=31%  Similarity=0.361  Sum_probs=26.3

Q ss_pred             eEEEEECC----CCCEEEEecCCCcEEEEECCCCceEEEe
Q psy7061           8 GLHCVFSP----DCRLLATTSADQTARIWNTEDFSLVREL   43 (65)
Q Consensus         8 v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   43 (65)
                      ......+.    +...+++...|+.+++|++.++..+...
T Consensus       217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            34445544    5678889999999999999998885543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.22  E-value=0.32  Score=24.11  Aligned_cols=52  Identities=29%  Similarity=0.394  Sum_probs=35.7

Q ss_pred             EECCCCCEEEEecCC-----CcEEEEECCCC-ceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          12 VFSPDCRLLATTSAD-----QTARIWNTEDF-SLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        12 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .|+|+|.++...-+|     +.+-+|+.+.+ ..+..+.. |.-.-+.+.|.+||+.++
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t-~GiGpHev~lm~DGrtlv  177 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFST-HGIGPHEVTLMADGRTLV  177 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccccc-CCcCcceeEEecCCcEEE
Confidence            478888876554432     45778887732 34455555 777788999999998875

>KOG3630|consensus

Probab=94.01  E-value=0.7  Score=27.19  Aligned_cols=59  Identities=15%  Similarity=0.133  Sum_probs=39.2

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCC--ceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDF--SLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ...+++.|+|.|+.++.+...+.+.-|...-.  ..+..........|.+++|-....+++
T Consensus       199 ~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  199 NSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             cceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            46789999999999999999998877765422  222222221246788888865554443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=93.48  E-value=0.38  Score=22.41  Aligned_cols=56  Identities=18%  Similarity=0.150  Sum_probs=32.6

Q ss_pred             cceEEEEECCCCCEEEEecCC--------CcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSAD--------QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .....+.+.++|+..++....        +.++.++.. ++. ..... .-...+.++|+|+++.++
T Consensus        86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~-~~~~pNGi~~s~dg~~ly  149 (246)
T PF08450_consen   86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVAD-GLGFPNGIAFSPDGKTLY  149 (246)
T ss_dssp             EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEE-EESSEEEEEEETTSSEEE
T ss_pred             CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EEEec-CcccccceEECCcchhee
Confidence            346678889998876665443        335555555 333 23332 234568899999988653

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=93.13  E-value=0.18  Score=25.62  Aligned_cols=56  Identities=13%  Similarity=0.105  Sum_probs=22.2

Q ss_pred             cceEEEEECCCCCEE-EEecCCC--cEEEEECCCCceEEEeeccCCCcEeEEEEccCCcE
Q psy7061           6 AYGLHCVFSPDCRLL-ATTSADQ--TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF   62 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   62 (65)
                      ...+.-.|.++|+++ ..+..++  .+++.++.+++....... .........++|+.+.
T Consensus        36 ~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg-~g~~~~g~~~s~~~~~   94 (386)
T PF14583_consen   36 LYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDG-PGDNTFGGFLSPDDRA   94 (386)
T ss_dssp             --TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---S-S-B-TTT-EE-TTSSE
T ss_pred             eeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccC-CCCCccceEEecCCCe
Confidence            344455778888655 4444444  466667777776544443 2222223444555444

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=93.11  E-value=0.55  Score=23.19  Aligned_cols=56  Identities=25%  Similarity=0.268  Sum_probs=30.3

Q ss_pred             eEEEEECCCCCEEEEecC---------CCcEEEEECC-CCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           8 GLHCVFSPDCRLLATTSA---------DQTARIWNTE-DFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .......|+|...+..-.         ...-.+|.++ .+..+..... +-..-+.++|||+++.+.
T Consensus       113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~-~~~~~NGla~SpDg~tly  178 (307)
T COG3386         113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD-DLTIPNGLAFSPDGKTLY  178 (307)
T ss_pred             CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecC-cEEecCceEECCCCCEEE
Confidence            345556677764433222         1112355544 4444444444 345557899999997653

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.70  E-value=0.66  Score=23.03  Aligned_cols=40  Identities=23%  Similarity=0.292  Sum_probs=30.3

Q ss_pred             ccceEEEEECCCCCEEEEec-CCCcEEEEECCCCceEEEee
Q psy7061           5 RAYGLHCVFSPDCRLLATTS-ADQTARIWNTEDFSLVRELG   44 (65)
Q Consensus         5 ~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   44 (65)
                      .+++-++.++.++..++.++ ..+.+.+|+..++..+....
T Consensus       216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP  256 (305)
T ss_pred             CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence            45788899999887765444 57789999999888765544

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=92.69  E-value=0.53  Score=21.95  Aligned_cols=54  Identities=19%  Similarity=0.143  Sum_probs=38.9

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEE-ccCCcEE
Q psy7061           8 GLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAF-TLDSKFL   63 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~i   63 (65)
                      .-.+.+..+|+..++....+.|..++.+ ++.+..+.. ....+.+++| -++.+.|
T Consensus       186 pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~-p~~~~t~~~fgg~~~~~L  240 (246)
T PF08450_consen  186 PDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL-PVPRPTNCAFGGPDGKTL  240 (246)
T ss_dssp             EEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE--SSSSEEEEEEESTTSSEE
T ss_pred             CCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC-CCCCEEEEEEECCCCCEE
Confidence            4567788888887777788899999987 777777776 4458899999 4554444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=92.68  E-value=0.95  Score=24.81  Aligned_cols=36  Identities=11%  Similarity=0.125  Sum_probs=23.5

Q ss_pred             CcEEEEECCC----C-ceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          27 QTARIWNTED----F-SLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        27 ~~~~~~~~~~----~-~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +.|.+.|..+    + ..+..+.  -....+.+.++|+|++++
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkyly  336 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFI  336 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEE--CCCCccceEECCCCCEEE
Confidence            4566677665    2 2333333  356678899999999876

>KOG0309|consensus

Probab=92.63  E-value=0.47  Score=26.62  Aligned_cols=55  Identities=16%  Similarity=0.178  Sum_probs=38.5

Q ss_pred             CccccceEEEEECCCC-CEEEEecCCCcEEEEECCCC-ceEEEeeccCCCcEeEEEEc
Q psy7061           2 AAHRAYGLHCVFSPDC-RLLATTSADQTARIWNTEDF-SLVRELGTANQRWVWDAAFT   57 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~   57 (65)
                      -+|...++.+.|.+.. ..+++++-+..+..|++++. ..+..... -......++|+
T Consensus       111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~-w~s~asqVkwn  167 (1081)
T KOG0309|consen  111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS-WRSAASQVKWN  167 (1081)
T ss_pred             ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec-ccccCceeeec
Confidence            4688889999999854 46788999999999999864 34444433 33444555554

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=92.56  E-value=0.78  Score=23.53  Aligned_cols=55  Identities=11%  Similarity=0.063  Sum_probs=35.9

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCC
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS   60 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   60 (65)
                      +.+..++.+|+++.++.-..++.+.+...+-.+....+..........+.|.-+.
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            4688899999999888888888888776554444444433123444566665443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1275|consensus

Probab=92.50  E-value=1.2  Score=25.74  Aligned_cols=46  Identities=13%  Similarity=0.208  Sum_probs=36.4

Q ss_pred             CCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          16 DCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +++.+.+|...|.|.+.|..+.+.+.++.. |.+.+..+..  .|..++
T Consensus       186 Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a-Hs~siSDfDv--~GNlLi  231 (1118)
T KOG1275|consen  186 NNRNLFCGDTRGTVFLRDPNSFETIHTFDA-HSGSISDFDV--QGNLLI  231 (1118)
T ss_pred             cCcEEEeecccceEEeecCCcCceeeeeec-cccceeeeec--cCCeEE
Confidence            567788888999999999999999999998 8888877644  444444

>KOG0309|consensus

Probab=92.50  E-value=0.09  Score=29.06  Aligned_cols=60  Identities=13%  Similarity=0.127  Sum_probs=35.5

Q ss_pred             CccccceEEEEECCCC-CEEEEecCCCcEEEEECCCCce-EEEeeccCCCcEeEEEEccCCcE
Q psy7061           2 AAHRAYGLHCVFSPDC-RLLATTSADQTARIWNTEDFSL-VRELGTANQRWVWDAAFTLDSKF   62 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~   62 (65)
                      ++|...+..++|.... ..+.+++.++.|++|+...... -..... ....++..++-|-|..
T Consensus       198 K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt-t~~piw~~r~~Pfg~g  259 (1081)
T KOG0309|consen  198 KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT-TNFPIWRGRYLPFGEG  259 (1081)
T ss_pred             cccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc-ccCcceeccccccCce
Confidence            4555666666665422 3477888999999999874322 111222 3455666666665443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.45  E-value=0.57  Score=25.24  Aligned_cols=47  Identities=15%  Similarity=0.118  Sum_probs=32.2

Q ss_pred             CCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          17 CRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +-+++.++..|.+++|+--..+.-..+.+ -...+..+..+.+|++++
T Consensus       573 sGyIa~as~kGDirLyDRig~rAKtalP~-lG~aIk~idvta~Gk~il  619 (776)
T COG5167         573 SGYIAAASRKGDIRLYDRIGKRAKTALPG-LGDAIKHIDVTANGKHIL  619 (776)
T ss_pred             CceEEEecCCCceeeehhhcchhhhcCcc-cccceeeeEeecCCcEEE
Confidence            34688899999999998654443333444 556677777777777765

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=92.42  E-value=1.2  Score=25.48  Aligned_cols=33  Identities=21%  Similarity=0.189  Sum_probs=22.8

Q ss_pred             cccceEEEEECCCCCEEEE-ecCCC-----cEEEEECCC
Q psy7061           4 HRAYGLHCVFSPDCRLLAT-TSADQ-----TARIWNTED   36 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~   36 (65)
                      +...+...+|+|+|+.++. .+..+     .|++.++++
T Consensus       348 ~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t  386 (912)
T TIGR02171       348 DTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNA  386 (912)
T ss_pred             CCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhc
Confidence            3456788899999998866 33222     477777774

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>KOG1354|consensus

Probab=92.20  E-value=0.55  Score=23.90  Aligned_cols=29  Identities=17%  Similarity=0.064  Sum_probs=25.1

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECC
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTE   35 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~   35 (65)
                      -+.++.|...|..+++|..+|+|-+|.-.
T Consensus        27 iis~vef~~~Ge~LatGdkgGRVv~f~r~   55 (433)
T KOG1354|consen   27 IISAVEFDHYGERLATGDKGGRVVLFERE   55 (433)
T ss_pred             ceeeEEeecccceEeecCCCCeEEEeecc
Confidence            36788999999999999999999998654

>KOG1920|consensus

Probab=91.92  E-value=1  Score=26.51  Aligned_cols=55  Identities=9%  Similarity=0.156  Sum_probs=31.8

Q ss_pred             EEEEECCCCCEEEEec-----CCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           9 LHCVFSPDCRLLATTS-----ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         9 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +.+.|--+|++++...     ....+++|+-. +.. ..........-.+++|-|.|..+++
T Consensus       199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L-ns~se~~~~l~~~LsWkPsgs~iA~  258 (1265)
T KOG1920|consen  199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSGSLIAA  258 (1265)
T ss_pred             ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh-hcccCcccccccceeecCCCCeEee
Confidence            3478888898776632     23678888865 221 1111112333457777777776653

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=91.83  E-value=1.2  Score=23.89  Aligned_cols=57  Identities=7%  Similarity=0.067  Sum_probs=34.3

Q ss_pred             cccceEEEEECCCCCEE--EEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           4 HRAYGLHCVFSPDCRLL--ATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+.|....|.|.++.+  ++|.....+.+++++.. ....+   ....-..+.|+|.+++++
T Consensus       273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~---Pe~~rNT~~fsp~~r~il  331 (561)
T COG5354         273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF---PEQKRNTIFFSPHERYIL  331 (561)
T ss_pred             ccccceeeeecccCCceeEEecccccceeecccccc-eEEec---CCcccccccccCcccEEE
Confidence            35678899999987654  44567778888888744 21111   122334445566665554

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=91.82  E-value=0.88  Score=22.52  Aligned_cols=56  Identities=16%  Similarity=0.149  Sum_probs=29.8

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCC-ceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDF-SLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      +.+..+...+++.+++.+.......-|+.-.. -......  ....+..+.|.|++...
T Consensus       145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~--~~~riq~~gf~~~~~lw  201 (302)
T PF14870_consen  145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRN--SSRRIQSMGFSPDGNLW  201 (302)
T ss_dssp             --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EE
T ss_pred             ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccC--ccceehhceecCCCCEE
Confidence            45667777888998877766666566664322 2222222  46889999999987664

>KOG1517|consensus

Probab=91.39  E-value=1.9  Score=25.53  Aligned_cols=45  Identities=13%  Similarity=0.161  Sum_probs=30.5

Q ss_pred             CCCEEEEecCCCcEEEEECCCCc---eEEEeeccCCCc--EeEEEEccCCc
Q psy7061          16 DCRLLATTSADQTARIWNTEDFS---LVRELGTANQRW--VWDAAFTLDSK   61 (65)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--v~~~~~~~~~~   61 (65)
                      .|+.++.|-.||.+++||.+...   .+..... |...  |..+.+.+.|.
T Consensus      1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~-h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE-HNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred             CCceEEEeecCCceEEeecccCCccccceeecc-cCCcccceeEEeecCCC
Confidence            47889999999999999987432   2333333 5444  77777766543

>KOG2377|consensus

Probab=91.23  E-value=1.4  Score=23.60  Aligned_cols=54  Identities=19%  Similarity=0.077  Sum_probs=36.0

Q ss_pred             ccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEE----EeeccCCCcEeEEEEccC
Q psy7061           5 RAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVR----ELGTANQRWVWDAAFTLD   59 (65)
Q Consensus         5 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~   59 (65)
                      .+.|.++.|++|.+.++....+..+.+++....+...    .... ....+..+.|+.+
T Consensus        66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~-k~~~IlGF~W~~s  123 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKT-KNANILGFCWTSS  123 (657)
T ss_pred             CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhcc-CcceeEEEEEecC
Confidence            4689999999999989888889999988874322111    1111 2344666666554

>PRK10115 protease 2; Provisional

Probab=91.17  E-value=1.6  Score=24.14  Aligned_cols=54  Identities=20%  Similarity=0.053  Sum_probs=32.3

Q ss_pred             ceEEEEECCCCCEEEEecC-CC----cEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061           7 YGLHCVFSPDCRLLATTSA-DQ----TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      .+..+.++|++++++.+.. ++    .+++.++.++..+..... ...  ..++|.++++.+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~-~~~--~~~~w~~D~~~~  186 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD-NVE--PSFVWANDSWTF  186 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc-Ccc--eEEEEeeCCCEE
Confidence            3566788999987655432 22    467777776653322222 111  458898887755

>KOG0882|consensus

Probab=91.14  E-value=0.24  Score=25.90  Aligned_cols=38  Identities=26%  Similarity=0.290  Sum_probs=31.6

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL   43 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   43 (65)
                      +...++.|+|++..+.+-+.+..|+.+...+++.+..+
T Consensus       202 t~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  202 TEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             cCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence            45678999999999999999999999999887755443

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=91.08  E-value=0.56  Score=18.87  Aligned_cols=37  Identities=14%  Similarity=0.091  Sum_probs=23.6

Q ss_pred             CCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          26 DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .|.+..|++.+++......+  -...+.++.++++..++
T Consensus        36 ~GRll~ydp~t~~~~vl~~~--L~fpNGVals~d~~~vl   72 (89)
T PF03088_consen   36 TGRLLRYDPSTKETTVLLDG--LYFPNGVALSPDESFVL   72 (89)
T ss_dssp             -EEEEEEETTTTEEEEEEEE--ESSEEEEEE-TTSSEEE
T ss_pred             CcCEEEEECCCCeEEEehhC--CCccCeEEEcCCCCEEE
Confidence            45677788877765444443  34567888899988664

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PRK13616 lipoprotein LpqB; Provisional

Probab=90.54  E-value=1.7  Score=23.61  Aligned_cols=55  Identities=13%  Similarity=0.136  Sum_probs=31.1

Q ss_pred             ceEEEEECCCCCEEEEec------CCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061           7 YGLHCVFSPDCRLLATTS------ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      .+....++|+++.++...      .+..-.+|-...+.....+..  ........|+|+++.+
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~--g~~~t~PsWspDG~~l  411 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE--GHSLTRPSWSLDADAV  411 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec--CCCCCCceECCCCCce
Confidence            466778899998765554      233334443332222223322  2237888899987654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=90.46  E-value=2.3  Score=24.87  Aligned_cols=33  Identities=9%  Similarity=0.064  Sum_probs=27.3

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCce
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSL   39 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   39 (65)
                      ....+.++++|+.+++-..++.+++|++.++..
T Consensus       860 ~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        860 EPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            466788899999888888899999999987654

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=90.41  E-value=2  Score=24.71  Aligned_cols=36  Identities=8%  Similarity=-0.022  Sum_probs=25.4

Q ss_pred             CcEEEEECCCCceEEE-eeccCCCcEeEEEEccCCcEEe
Q psy7061          27 QTARIWNTEDFSLVRE-LGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        27 ~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +.+.+-|.+....... +.  ....+.+..|||+|+.++
T Consensus       329 ~~L~~~D~dG~n~~~ve~~--~~~~i~sP~~SPDG~~vA  365 (912)
T TIGR02171       329 GNLAYIDYTKGASRAVEIE--DTISVYHPDISPDGKKVA  365 (912)
T ss_pred             CeEEEEecCCCCceEEEec--CCCceecCcCCCCCCEEE
Confidence            4666667665554433 33  578889999999999885

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>KOG1064|consensus

Probab=90.37  E-value=1.5  Score=27.51  Aligned_cols=55  Identities=18%  Similarity=0.087  Sum_probs=38.0

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCc
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK   61 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   61 (65)
                      .+....=+|.....++++.|+.+++|.--.+..+..+.......|..+.|+.+|.
T Consensus      2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGn 2264 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGN 2264 (2439)
T ss_pred             ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCC
Confidence            3444555666678899999999999987766666666542346677777766554

>KOG0882|consensus

Probab=88.84  E-value=2.3  Score=22.65  Aligned_cols=61  Identities=13%  Similarity=0.071  Sum_probs=42.1

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCC------CceEEEee------c--cCCCcEeEEEEccCCcEEe
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTED------FSLVRELG------T--ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~------~--~~~~~v~~~~~~~~~~~i~   64 (65)
                      |...|....+.+.+...++....|.|..|....      .+.--.+.      .  .......++.++|++..+.
T Consensus       143 H~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qis  217 (558)
T KOG0882|consen  143 HFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIS  217 (558)
T ss_pred             ccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccc
Confidence            777889999999888888888899999998762      11100000      0  1345557888899887765

>KOG4532|consensus

Probab=88.78  E-value=1.9  Score=21.46  Aligned_cols=29  Identities=10%  Similarity=0.055  Sum_probs=24.9

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCC
Q psy7061           8 GLHCVFSPDCRLLATTSADQTARIWNTED   36 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~   36 (65)
                      ...+.+++++++.++.+....|.+|.++.
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~  189 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDD  189 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCC
Confidence            56788999999998888888999998874

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=88.65  E-value=0.48  Score=14.46  Aligned_cols=23  Identities=9%  Similarity=0.218  Sum_probs=12.9

Q ss_pred             EEEEECCCCCEEEEecCCCcEEE
Q psy7061           9 LHCVFSPDCRLLATTSADQTARI   31 (65)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~   31 (65)
                      ..++..++|+.+++=...+.+.+
T Consensus         5 ~gvav~~~g~i~VaD~~n~rV~v   27 (28)
T PF01436_consen    5 HGVAVDSDGNIYVADSGNHRVQV   27 (28)
T ss_dssp             EEEEEETTSEEEEEECCCTEEEE
T ss_pred             cEEEEeCCCCEEEEECCCCEEEE
Confidence            44555566666655555555544

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=88.54  E-value=2.5  Score=22.70  Aligned_cols=19  Identities=21%  Similarity=0.291  Sum_probs=16.0

Q ss_pred             cCCCcEeEEEEccCCcEEe
Q psy7061          46 ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        46 ~~~~~v~~~~~~~~~~~i~   64 (65)
                      ....++..++|+|+++.++
T Consensus       499 P~gaE~tG~~fspDg~tlF  517 (524)
T PF05787_consen  499 PNGAEITGPCFSPDGRTLF  517 (524)
T ss_pred             CCCcccccceECCCCCEEE
Confidence            3568889999999999875

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=88.45  E-value=1.8  Score=20.86  Aligned_cols=59  Identities=10%  Similarity=0.062  Sum_probs=34.7

Q ss_pred             ccceEEEEECCCCC-EEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           5 RAYGLHCVFSPDCR-LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         5 ~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ...+..+.|.|+.. .++...+.+.+...+.+ ++.+..+.-..-...-.+++..++.+++
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl   80 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVL   80 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEE
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEE
Confidence            34588999999755 56777777888777764 6666665431234455666665555554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.15  E-value=2.2  Score=21.41  Aligned_cols=39  Identities=23%  Similarity=0.269  Sum_probs=25.0

Q ss_pred             ccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEe
Q psy7061           5 RAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL   43 (65)
Q Consensus         5 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   43 (65)
                      ...+.++.|+|+.+.+.+.......-++--..|..+..+
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti  123 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI  123 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe
Confidence            345889999999988777666555444433445554443

>KOG2695|consensus

Probab=87.97  E-value=0.5  Score=24.03  Aligned_cols=32  Identities=6%  Similarity=-0.070  Sum_probs=26.2

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCC
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDF   37 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   37 (65)
                      ++|.+..|...++.+..|..++.+...|++..
T Consensus       253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~r  284 (425)
T KOG2695|consen  253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCR  284 (425)
T ss_pred             hhHHHHHhcccCCeeEecccCCcEEEEEeeec
Confidence            46777888777788888889999999998854

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=87.63  E-value=2.1  Score=20.66  Aligned_cols=58  Identities=14%  Similarity=0.067  Sum_probs=30.1

Q ss_pred             cceEEEEECCC-CCEEEEecCCCcEEEEECCCCceEEEeec---cCC-----CcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPD-CRLLATTSADQTARIWNTEDFSLVRELGT---ANQ-----RWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~v~~~~~~~~~~~i~   64 (65)
                      .++..+.++|. ++.++-+.....+..++ ..++....+.-   .+.     .-.-.+++.++|+.++
T Consensus       171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI  237 (248)
T PF06977_consen  171 RDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI  237 (248)
T ss_dssp             S---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred             ccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence            45778889885 45667777788888888 44554433322   010     2245788899988765

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=87.08  E-value=0.16  Score=15.19  Aligned_cols=8  Identities=25%  Similarity=0.692  Sum_probs=5.1

Q ss_pred             EEccCCcE
Q psy7061          55 AFTLDSKF   62 (65)
Q Consensus        55 ~~~~~~~~   62 (65)
                      .|||+|+.
T Consensus         7 ~FSp~Grl   14 (23)
T PF10584_consen    7 TFSPDGRL   14 (23)
T ss_dssp             SBBTTSSB
T ss_pred             eECCCCeE
Confidence            36777764

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=86.80  E-value=2.8  Score=21.34  Aligned_cols=30  Identities=17%  Similarity=0.086  Sum_probs=25.9

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECC
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTE   35 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~   35 (65)
                      ..|+++.|...|.++++|...|+|-+|.-.
T Consensus        27 d~ItaVefd~tg~YlatGDkgGRVvlfer~   56 (460)
T COG5170          27 DKITAVEFDETGLYLATGDKGGRVVLFERE   56 (460)
T ss_pred             ceeeEEEeccccceEeecCCCceEEEeecc
Confidence            458899999989999999999999998754

>KOG1645|consensus

Probab=86.51  E-value=3.3  Score=21.77  Aligned_cols=32  Identities=6%  Similarity=0.133  Sum_probs=25.4

Q ss_pred             cceEEEEECCCC-CEEEEecCCCcEEEEECCCC
Q psy7061           6 AYGLHCVFSPDC-RLLATTSADQTARIWNTEDF   37 (65)
Q Consensus         6 ~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   37 (65)
                      ..+.+++|+-+. +.+..|..+|.|.+||++..
T Consensus       236 ~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  236 NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence            457788898865 56777888999999999843

>KOG2066|consensus

Probab=85.80  E-value=4.8  Score=23.05  Aligned_cols=58  Identities=7%  Similarity=0.118  Sum_probs=36.7

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccC-----CCcEeEEEEccCCcEEe
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTAN-----QRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~i~   64 (65)
                      -.+.|.++.|.  |+.++.++..| +++|+......+......+     ......+.|.++.+.++
T Consensus       159 ~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI  221 (846)
T KOG2066|consen  159 GEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI  221 (846)
T ss_pred             CccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE
Confidence            34678888884  78888877555 7888988777766655411     11123566666655543

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=85.67  E-value=4.3  Score=22.37  Aligned_cols=56  Identities=20%  Similarity=0.106  Sum_probs=32.3

Q ss_pred             EEEEECCCCCEEEEecCCC------cEEEEE-----CCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           9 LHCVFSPDCRLLATTSADQ------TARIWN-----TEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~------~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      -.+.|.|.|++.+......      ..-++.     ...++....+......++...+|+||++.++
T Consensus       503 Dnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlF  569 (616)
T COG3211         503 DNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLF  569 (616)
T ss_pred             CceEECCCCCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEE
Confidence            3567778777655443322      111221     1233344444444568999999999998775

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=85.01  E-value=5.1  Score=22.63  Aligned_cols=33  Identities=18%  Similarity=0.191  Sum_probs=26.7

Q ss_pred             ccceEEEEECCCC---CEEEEecCCCcEEEEECCCC
Q psy7061           5 RAYGLHCVFSPDC---RLLATTSADQTARIWNTEDF   37 (65)
Q Consensus         5 ~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~   37 (65)
                      ...|..+.|+|.+   ..++.-..|+.+++|++...
T Consensus       146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            3468899999964   67888888999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG4649|consensus

Probab=84.26  E-value=3.8  Score=20.47  Aligned_cols=33  Identities=15%  Similarity=0.075  Sum_probs=25.2

Q ss_pred             ECCCCCEEEEecCCCcEEEEECCCCceEEEeec
Q psy7061          13 FSPDCRLLATTSADQTARIWNTEDFSLVRELGT   45 (65)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   45 (65)
                      ..+++..+-.++.|+..+..|+++...+...+-
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence            455677788888999999888888777766553

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=83.29  E-value=6  Score=22.08  Aligned_cols=60  Identities=8%  Similarity=0.117  Sum_probs=39.2

Q ss_pred             ccceEEEEEC--CCCCEEEEecCCCcEEEEECCC------C---ceEEEe--eccCCCcEeEEEEccCCcEEe
Q psy7061           5 RAYGLHCVFS--PDCRLLATTSADQTARIWNTED------F---SLVREL--GTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         5 ~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~--~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+.|..++|.  |+++.+++.+-.+.|.++....      +   ..+..+  .......+.+..|-++|..++
T Consensus        72 ~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV  144 (631)
T PF12234_consen   72 DDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV  144 (631)
T ss_pred             CCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEE
Confidence            4578888884  4778888888888888886531      1   112222  121336778899999988775

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=83.23  E-value=1.3  Score=14.34  Aligned_cols=31  Identities=23%  Similarity=0.322  Sum_probs=20.5

Q ss_pred             CCCCEE-EEecCCCcEEEEECCCCceEEEeec
Q psy7061          15 PDCRLL-ATTSADQTARIWNTEDFSLVRELGT   45 (65)
Q Consensus        15 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   45 (65)
                      |+++.+ ++...++.+.+++..+...+.....
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            455544 4444577888899887776666554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length

Probab=82.30  E-value=1.7  Score=18.55  Aligned_cols=22  Identities=36%  Similarity=0.453  Sum_probs=15.2

Q ss_pred             EECCCCCEEEEecCCCcEEEEE
Q psy7061          12 VFSPDCRLLATTSADQTARIWN   33 (65)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~   33 (65)
                      .|+|||+++....+|+.+.-.+
T Consensus        74 vfSpDG~~lSFTYNDhVmhe~d   95 (122)
T PF12566_consen   74 VFSPDGSWLSFTYNDHVMHELD   95 (122)
T ss_pred             EECCCCCEEEEEecchhhcccc
Confidence            5788888887777777655433

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=82.11  E-value=3  Score=17.70  Aligned_cols=27  Identities=22%  Similarity=0.219  Sum_probs=19.8

Q ss_pred             EEEEECCCC-CEEEEecCCCcEEEEECC
Q psy7061           9 LHCVFSPDC-RLLATTSADQTARIWNTE   35 (65)
Q Consensus         9 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~   35 (65)
                      ..++|..++ +.++.++.|..+++|+-.
T Consensus         6 ~~~d~d~dg~~eLlvGs~D~~IRvf~~~   33 (111)
T PF14783_consen    6 CLFDFDGDGENELLVGSDDFEIRVFKGD   33 (111)
T ss_pred             EEEecCCCCcceEEEecCCcEEEEEeCC
Confidence            344555555 578899999999999754

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=81.90  E-value=5  Score=20.17  Aligned_cols=29  Identities=24%  Similarity=0.134  Sum_probs=22.7

Q ss_pred             CCEEEEecCCCcEEEEECCCCceEEEeec
Q psy7061          17 CRLLATTSADQTARIWNTEDFSLVRELGT   45 (65)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   45 (65)
                      +..+..++.++.+++++..+++.+.....
T Consensus       320 g~~l~~~~~~G~l~~~d~~tG~~~~~~~~  348 (377)
T TIGR03300       320 GGYLVVGDFEGYLHWLSREDGSFVARLKT  348 (377)
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence            45677778889999999988888766654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	65
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		9e-04

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 4    HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL 63
            H+   L C  S D    ++TSAD+TA+IW+ +  S + EL   N   V  +AF+LD   L
Sbjct: 1091 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG-CVRCSAFSLDGILL 1149
Query: 64   LT 65
             T
Sbjct: 1150 AT 1151

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	65
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.78
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.75
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.71
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.7
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.69
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.68
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.68
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.66
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.66
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.66
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.66
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.65
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.65
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.65
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.64
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.63
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.63
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.62
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.62
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.61
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.61
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.61
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.6
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.6
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.6
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.59
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.59
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.59
2pm7_B	297	Protein transport protein SEC13, protein transport	99.58
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.58
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.58
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.57
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.57
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.56
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.56
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.56
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.56
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.56
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.55
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.55
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.54
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.54
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.53
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.53
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.53
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.53
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.53
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.52
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.52
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.52
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.51
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.51
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.5
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.5
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.48
2pm7_B	297	Protein transport protein SEC13, protein transport	99.48
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.48
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.48
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.47
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.47
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.47
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.46
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.46
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.45
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.45
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.45
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.45
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.44
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.44
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.44
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.44
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.43
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.43
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.43
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.43
3jro_A	753	Fusion protein of protein transport protein SEC13	99.43
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.42
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.42
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.41
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.41
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.41
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.41
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.41
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.4
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.4
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.4
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.4
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.38
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.38
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.38
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.37
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.37
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.37
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.37
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.36
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.36
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.35
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.35
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.34
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.34
3jro_A	753	Fusion protein of protein transport protein SEC13	99.34
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.34
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.34
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.33
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.32
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.32
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.3
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.29
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.28
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.28
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.27
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.27
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.26
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.26
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.26
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.23
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.21
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.19
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.17
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.15
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.13
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.1
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.1
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.1
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.09
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.02
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.02
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.01
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.93
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.93
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.93
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.91
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.88
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.87
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.84
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.83
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.8
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.77
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.76
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.73
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.72
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.7
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.69
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.68
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.67
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.66
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.65
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.62
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.62
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.62
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.6
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.58
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.58
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.57
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.53
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.53
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.5
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.5
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.5
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.5
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.49
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.46
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.46
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.42
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.4
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.38
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.38
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.37
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.32
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.31
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.28
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.25
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.24
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.23
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.22
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.18
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.15
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.12
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.12
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.07
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.04
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.0
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.0
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.94
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.89
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.86
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.85
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.83
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.71
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.7
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	97.69
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.65
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.56
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.54
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.5
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.47
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.43
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.34
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.3
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.28
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.22
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.2
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.19
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.17
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.15
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.14
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.1
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.05
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	96.86
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.86
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	96.74
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.62
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	96.37
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.37
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	96.28
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.26
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	96.23
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.22
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	96.2
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	95.86
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	95.64
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	95.63
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	95.6
2ece_A	462	462AA long hypothetical selenium-binding protein;	95.59
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	95.53
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	95.4
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	95.09
2p4o_A	306	Hypothetical protein; putative lactonase, structur	95.04
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	95.02
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	94.87
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	94.72
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	94.72
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	94.14
2qe8_A	343	Uncharacterized protein; structural genomics, join	94.02
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	93.37
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	93.31
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.2
2p4o_A	306	Hypothetical protein; putative lactonase, structur	92.41
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	91.63
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	91.28
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	90.67
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	89.26
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	89.09
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	87.66
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	87.26
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	87.18
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	86.95
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	86.81
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	86.12
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	86.04
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	85.76
3kya_A	496	Putative phosphatase; structural genomics, joint c	84.84
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	83.91
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	83.86
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	82.82
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	80.13

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.78  E-value=4e-18  Score=79.04  Aligned_cols=63  Identities=13%  Similarity=0.090  Sum_probs=56.9

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +|...|.+++|+|+++++++++.|+.+++|++.+++.+..+...|...|.+++|+|++++|+|
T Consensus       267 ~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS  329 (365)
T 4h5i_A          267 NRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVAS  329 (365)
T ss_dssp             SSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEE
T ss_pred             CCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEE
Confidence            567789999999999999999999999999999999888764338999999999999999975

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.75  E-value=1.9e-17  Score=79.47  Aligned_cols=63  Identities=30%  Similarity=0.542  Sum_probs=57.7

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |++|.+.|.+++|+|+++++++++.++.+++|+. +++.+..+.+ |...|.+++|+|+++++++
T Consensus        12 L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~g-h~~~V~~l~fspdg~~las   74 (577)
T 2ymu_A           12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVWGVAFSPDGQTIAS   74 (577)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEEC-CSSCEEEEEECTTSSEEEE
T ss_pred             ECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeC-CCCCEEEEEECCCCCEEEE
Confidence            5689999999999999999999999999999995 6778888888 9999999999999999874

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.71  E-value=4.1e-16  Score=70.96  Aligned_cols=64  Identities=20%  Similarity=0.369  Sum_probs=54.5

Q ss_pred             CCccccceEEEEECCC-CCEEEEecCCCcEEEEECCCCc-----eEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPD-CRLLATTSADQTARIWNTEDFS-----LVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |++|.+.|.+++|+|+ ++++++++.|+.+++|++....     ....+.+ |...|.+++|+|+++++++
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~-h~~~V~~~~~s~dg~~l~s  103 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG-HSHFVSDVVISSDGQFALS  103 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECC-CSSCEEEEEECTTSSEEEE
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeC-CCCCEEEEEECCCCCEEEE
Confidence            5789999999999997 5899999999999999987532     3445666 8999999999999998864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.70  E-value=7.8e-16  Score=71.20  Aligned_cols=64  Identities=30%  Similarity=0.294  Sum_probs=57.9

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCc-EEEEECCCCceEEEeec-cCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQT-ARIWNTEDFSLVRELGT-ANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...|.++.|+|+++++++++.|+. +++|++.+++.+..+.. .|...|.+++|+|+++++++
T Consensus       192 ~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s  257 (355)
T 3vu4_A          192 KAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAV  257 (355)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEE
T ss_pred             EccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEE
Confidence            468899999999999999999999998 99999999999888873 37899999999999998874

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.69  E-value=2.2e-16  Score=73.45  Aligned_cols=64  Identities=16%  Similarity=0.317  Sum_probs=59.1

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |++|.+.|.++.|+|+++++++++.|+.+++|+..++.....+.. |...|.+++|+|+++++++
T Consensus        62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-h~~~v~~~~~s~~g~~las  125 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-HCPWVMECAFAPNGQSVAC  125 (380)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC-CCTTCCCCEECTTSSEEEE
T ss_pred             ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEec-CCCCEEEEEECCCCCEEEE
Confidence            468999999999999999999999999999999999988888888 8899999999999998874

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.68  E-value=1.5e-15  Score=69.54  Aligned_cols=63  Identities=19%  Similarity=0.469  Sum_probs=58.4

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...|..+.|+|++..+++++.|+.+++|++.++..+..+.. |...|.+++|+|+++.+++
T Consensus       245 ~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~g~~l~s  307 (321)
T 3ow8_A          245 SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD-HQDQVWGVKYNGNGSKIVS  307 (321)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEE
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC-CCCcEEEEEECCCCCEEEE
Confidence            46888999999999999999999999999999999999988888 8999999999999998874

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.68  E-value=1.5e-15  Score=69.88  Aligned_cols=63  Identities=21%  Similarity=0.344  Sum_probs=58.3

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...|.++.|+|++..+++++.|+.+++|+++++..+..+.. |...|.+++|+|+++++++
T Consensus        73 ~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~~l~s  135 (343)
T 2xzm_R           73 TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVG-HQSEVYSVAFSPDNRQILS  135 (343)
T ss_dssp             CCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEEC-CCSCEEEEEECSSTTEEEE
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcC-CCCcEEEEEECCCCCEEEE
Confidence            46888999999999999999999999999999999998888888 8999999999999998864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.66  E-value=3.2e-15  Score=68.73  Aligned_cols=64  Identities=22%  Similarity=0.382  Sum_probs=58.6

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |.+|.+.|.++.|+|+++.+++++.|+.+++|+..++..+..+.. |...+.+++|+|+++++++
T Consensus        51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s  114 (340)
T 1got_B           51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGNYVAC  114 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-SSSCEEEEEECTTSSEEEE
T ss_pred             ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec-CCccEEEEEECCCCCEEEE
Confidence            357999999999999999999999999999999999888888887 8899999999999998864

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.66  E-value=3.8e-15  Score=67.59  Aligned_cols=64  Identities=28%  Similarity=0.436  Sum_probs=58.5

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +.+|...|.++.|+|+++.+++++.++.+++|+..+++....+.. |...+.+++|+|+++++++
T Consensus        19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s   82 (312)
T 4ery_A           19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSNLLVS   82 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEE
T ss_pred             EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhcc-CCCceEEEEEcCCCCEEEE
Confidence            357899999999999999999999999999999998888888887 8999999999999998864

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.66  E-value=1.5e-15  Score=71.29  Aligned_cols=63  Identities=25%  Similarity=0.422  Sum_probs=58.4

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...|.++.|+|++..+++++.|+.+++|++.++.....+.+ |...|.+++|+|+++++++
T Consensus       105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~-h~~~V~~v~~~~~~~~l~s  167 (410)
T 1vyh_C          105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLAS  167 (410)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEEE
T ss_pred             cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-cCCcEEEEEEcCCCCEEEE
Confidence            46889999999999999999999999999999999988888888 8999999999999998864

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.66  E-value=3.3e-15  Score=68.25  Aligned_cols=63  Identities=14%  Similarity=0.258  Sum_probs=58.4

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ++|...|..+.|+|+++.+++++.|+.+++|++.+++.+..+.. |...|.+++|+|++..+++
T Consensus        62 ~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s  124 (319)
T 3frx_A           62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVG-HKSDVMSVDIDKKASMIIS  124 (319)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSCEEEE
T ss_pred             eCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEcc-CCCcEEEEEEcCCCCEEEE
Confidence            46888999999999999999999999999999999999888888 8999999999999988764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.65  E-value=1.5e-15  Score=68.98  Aligned_cols=63  Identities=17%  Similarity=0.208  Sum_probs=58.1

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ++|...|.+++|+|+++.+++++.++.+++|++.++..+..+.. |...+.+++|+|+++++++
T Consensus        10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s   72 (304)
T 2ynn_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV-TETPVRAGKFIARKNWIIV   72 (304)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGTEEEE
T ss_pred             cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeec-cCCcEEEEEEeCCCCEEEE
Confidence            46888999999999999999999999999999999998888888 8899999999999988764

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.65  E-value=3.7e-15  Score=68.24  Aligned_cols=64  Identities=17%  Similarity=0.297  Sum_probs=58.9

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |.+|...|.++.|+|+++.+++++.++.+++|++.++..+..+.. |...+.+++|+|+++++++
T Consensus        28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s   91 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDG-HTGTIWSIDVDCFTKYCVT   91 (369)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEE
T ss_pred             EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhh-cCCcEEEEEEcCCCCEEEE
Confidence            357999999999999999999999999999999999999888888 8999999999999988864

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.65  E-value=3.6e-15  Score=68.31  Aligned_cols=63  Identities=29%  Similarity=0.467  Sum_probs=57.8

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...|.++.|+|+++.+++++.++.+++|+++.+.....+.. |...|.+++|+|+++++++
T Consensus       203 ~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l~s  265 (321)
T 3ow8_A          203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG-HASWVLNVAFCPDDTHFVS  265 (321)
T ss_dssp             CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEE
T ss_pred             cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC-CCCceEEEEECCCCCEEEE
Confidence            46788899999999999999999999999999999888888888 8999999999999998864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.64  E-value=8.2e-15  Score=67.40  Aligned_cols=63  Identities=16%  Similarity=0.303  Sum_probs=58.1

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|.+.|.++.|+|+++.+++++.++.+++|+++++.....+.. |...|.+++|+|+++.+++
T Consensus       181 ~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s  243 (340)
T 1got_B          181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG-HESDINAICFFPNGNAFAT  243 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC-CSSCEEEEEECTTSSEEEE
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC-CcCCEEEEEEcCCCCEEEE
Confidence            46888999999999999999999999999999999988888888 8999999999999998864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.63  E-value=6.1e-15  Score=68.23  Aligned_cols=64  Identities=16%  Similarity=0.244  Sum_probs=57.8

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |++|...|.++.|+|+++.+++++.|+.+++|+..++.....+.. +...+.+++|+|++..+++
T Consensus        60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-~~~~v~~~~~sp~g~~las  123 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM-PCTWVMACAYAPSGCAIAC  123 (354)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSSCCCEEEECTTSSEEEE
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec-CCCCEEEEEECCCCCEEEE
Confidence            357999999999999999999999999999999998888777777 7889999999999998864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.63  E-value=8.2e-15  Score=67.82  Aligned_cols=59  Identities=10%  Similarity=0.054  Sum_probs=55.2

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcE
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF   62 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   62 (65)
                      +|...|.++.|+|+++.+++++.++.+++|++.+++.+..+.+ |...|.+++|+|++..
T Consensus       125 ~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~-h~~~V~~~~~~~~~~~  183 (344)
T 4gqb_B          125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRA-HAAQVTCVAASPHKDS  183 (344)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECSSCTT
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-cCCceEEEEecCCCCC
Confidence            6888999999999999999999999999999999999999988 9999999999998753

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.62  E-value=1.1e-14  Score=71.13  Aligned_cols=64  Identities=20%  Similarity=0.289  Sum_probs=56.9

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeec------cCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGT------ANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...|.++.|+|+++.+++++.|+.+++|+..+++.+..+..      .|...|.+++|+|+++++++
T Consensus       187 ~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s  256 (611)
T 1nr0_A          187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS  256 (611)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEE
Confidence            56889999999999999999999999999999998888777631      28899999999999998874

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.62  E-value=1.6e-14  Score=66.25  Aligned_cols=63  Identities=22%  Similarity=0.271  Sum_probs=50.9

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCC----ceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDF----SLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...|.++.|+|+++.+++++.|+.+++|+++..    +.+..+.. |...|.+++|+|++.++++
T Consensus       104 ~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s  170 (330)
T 2hes_X          104 EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE-HSQDVKHVIWHPSEALLAS  170 (330)
T ss_dssp             C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC-CSSCEEEEEECSSSSEEEE
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc-CCCceEEEEECCCCCEEEE
Confidence            468889999999999999999999999999999532    34556666 8899999999999998874

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.61  E-value=6.3e-15  Score=69.23  Aligned_cols=63  Identities=21%  Similarity=0.369  Sum_probs=58.2

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ++|...|.++.|+|+++.+++++.|+.+++|++.....+..+.+ |...|.+++|+|++.++++
T Consensus       147 ~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~-h~~~V~~v~~~p~~~~l~s  209 (410)
T 1vyh_C          147 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHG-HDHNVSSVSIMPNGDHIVS  209 (410)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCC-CSSCEEEEEECSSSSEEEE
T ss_pred             eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcC-CCCCEEEEEEeCCCCEEEE
Confidence            57889999999999999999999999999999999888888888 8999999999999988864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.61  E-value=3e-14  Score=65.70  Aligned_cols=63  Identities=25%  Similarity=0.298  Sum_probs=55.3

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCC--ceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDF--SLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...|.++.|+|+++.+++++.|+.+++|+....  ..+..+.+ |...|.+++|+|+++++++
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~-h~~~v~~v~~sp~~~~l~s  122 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEG-HENEVKSVAWAPSGNLLAT  122 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECC-CSSCEEEEEECTTSSEEEE
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccC-CCCCceEEEEeCCCCEEEE
Confidence            468889999999999999999999999999998765  34566777 8999999999999998874

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.61  E-value=1.6e-14  Score=69.54  Aligned_cols=63  Identities=27%  Similarity=0.460  Sum_probs=56.0

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |.+|...|.++.|+|+++++++++.|+.+++|+. +++.+..+.. |...|.+++|+|+++++++
T Consensus        53 l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~  115 (577)
T 2ymu_A           53 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVRGVAFSPDGQTIAS  115 (577)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECC-CSSCEEEEEECTTSSEEEE
T ss_pred             EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEEC-CCCCEEEEEECCCCCEEEE
Confidence            3578999999999999999999999999999996 4677778887 8999999999999998864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.60  E-value=1.4e-14  Score=71.42  Aligned_cols=63  Identities=22%  Similarity=0.341  Sum_probs=58.3

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...|.++.|+|+++.+++++.|+.+++|++.++.....+.. |...|.+++|+|+++.++|
T Consensus       427 ~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s  489 (694)
T 3dm0_A          427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVG-HTKDVLSVAFSLDNRQIVS  489 (694)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSSCEEE
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeC-CCCCEEEEEEeCCCCEEEE
Confidence            46888999999999999999999999999999999998888888 8999999999999988764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.60  E-value=2.8e-14  Score=66.62  Aligned_cols=63  Identities=27%  Similarity=0.253  Sum_probs=58.0

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...|.++.|+|+++.+++++.++.+++|++.+++.+..+.. |...|.+++|+|+++.+++
T Consensus       136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s  198 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG-HRATVTDIAIIDRGRNVLS  198 (420)
T ss_dssp             TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC-CSSCEEEEEEETTTTEEEE
T ss_pred             ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC-CCCcEEEEEEcCCCCEEEE
Confidence            57889999999999999999999999999999999888888888 8999999999999998864

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.60  E-value=2e-14  Score=65.85  Aligned_cols=59  Identities=14%  Similarity=0.158  Sum_probs=54.5

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ..+.++.|+|+++.+++++.++.+++|++.++..+..+.. |...+.+++|+|+++++++
T Consensus       274 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~  332 (368)
T 3mmy_A          274 YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ-LDQPISACCFNHNGNIFAY  332 (368)
T ss_dssp             CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC-CSSCEEEEEECTTSSCEEE
T ss_pred             cceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC-CCCCceEEEECCCCCeEEE
Confidence            3799999999999999999999999999999999888888 8999999999999998874

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.59  E-value=1.6e-14  Score=65.61  Aligned_cols=62  Identities=13%  Similarity=0.133  Sum_probs=57.2

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .|...+..+.|+|+++.+++++.|+.+++|++.+++.+..+.. |...|.+++|+|+++++++
T Consensus        53 ~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s  114 (304)
T 2ynn_A           53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA-HPDYIRSIAVHPTKPYVLS  114 (304)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSEEEE
T ss_pred             ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeC-CCCcEEEEEEcCCCCEEEE
Confidence            4677899999999999999999999999999999999988888 8999999999999998864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.59  E-value=3.7e-14  Score=64.33  Aligned_cols=64  Identities=14%  Similarity=0.169  Sum_probs=54.6

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCC----ceEEEeeccCCCcEeEEEEcc--CCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDF----SLVRELGTANQRWVWDAAFTL--DSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~--~~~~i~s   65 (65)
                      +.+|...|.++.|+|+++.+++++.++.+++|++..+    .....+.. |...|.+++|+|  ++.++++
T Consensus         7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~d~~~l~s   76 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRA-HDSSIVAIDWASPEYGRIIAS   76 (351)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEEC-CSSCEEEEEECCGGGCSEEEE
T ss_pred             CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceecc-CCCcEEEEEEcCCCCCCEEEE
Confidence            3579999999999999999999999999999999865    34555666 899999999999  5777763

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.59  E-value=6.5e-14  Score=63.56  Aligned_cols=63  Identities=22%  Similarity=0.426  Sum_probs=57.8

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...|..+.|+|+++.+++++.++.+++|++.+++.+..+.. |...+.+++|+|++.++++
T Consensus        62 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s  124 (312)
T 4ery_A           62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVS  124 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSEEEE
T ss_pred             ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCEEEE
Confidence            46888899999999999999999999999999999998888888 8999999999999988864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.58  E-value=5.7e-14  Score=63.69  Aligned_cols=64  Identities=23%  Similarity=0.331  Sum_probs=54.6

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCC--CceEEEeeccCCCcEeEEEEccC--CcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTED--FSLVRELGTANQRWVWDAAFTLD--SKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~i~s   65 (65)
                      +.+|...|.++.|+|+++.+++++.|+.+++|++..  .+.+..+.+ |...|.+++|+|.  ++.++|
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~g-H~~~V~~v~~s~~~~g~~l~s   72 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILAS   72 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECC-CSSCEEEEEECCGGGCSEEEE
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcc-ccCCeEEEEecCCCcCCEEEE
Confidence            467999999999999999999999999999999874  356677777 8999999999763  777663

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.58  E-value=8.4e-14  Score=68.05  Aligned_cols=64  Identities=16%  Similarity=0.306  Sum_probs=57.5

Q ss_pred             CCccccceEEEEECCCCC-EEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCR-LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +.+|...|..+.|+|++. .+++++.|+.+++|+....+....+.+ |...|.+++|+|+++++++
T Consensus       143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~-H~~~V~~v~fspdg~~las  207 (611)
T 1nr0_A          143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE-HTKFVHSVRYNPDGSLFAS  207 (611)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC-CSSCEEEEEECTTSSEEEE
T ss_pred             ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc-ccCceEEEEECCCCCEEEE
Confidence            357889999999999886 699999999999999988888888888 8999999999999998874

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.58  E-value=3.9e-14  Score=65.69  Aligned_cols=62  Identities=23%  Similarity=0.266  Sum_probs=52.9

Q ss_pred             CccccceEEEEECCCC-CEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEcc-CCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDC-RLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL-DSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~i~s   65 (65)
                      .+|...|..+.|+|++ +++++++.|+.+++|++++++.+..+ . |...|.+++|+| ++++++|
T Consensus       266 ~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~-H~~~V~~vafsP~d~~~l~s  329 (357)
T 4g56_B          266 AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-S-HRDFVTGVAWSPLDHSKFTT  329 (357)
T ss_dssp             CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-C-CSSCEEEEEECSSSTTEEEE
T ss_pred             eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-C-CCCCEEEEEEeCCCCCEEEE
Confidence            4678899999999986 57899999999999999988776554 5 899999999998 7887764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.57  E-value=5.2e-14  Score=64.91  Aligned_cols=63  Identities=21%  Similarity=0.334  Sum_probs=54.1

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCc---eEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFS---LVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...|.++.|+|+++.+++++.|+.+++|+++...   .+..+.. |...|.+++|+|+++++++
T Consensus       102 ~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s  167 (345)
T 3fm0_A          102 EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS-HTQDVKHVVWHPSQELLAS  167 (345)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC-CCSCEEEEEECSSSSCEEE
T ss_pred             cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC-cCCCeEEEEECCCCCEEEE
Confidence            5788999999999999999999999999999998653   3445556 8899999999999988764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.57  E-value=9.5e-14  Score=63.51  Aligned_cols=61  Identities=25%  Similarity=0.316  Sum_probs=54.8

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+|...|..+.|+|+++.+++++.|+.+++|++..++.+..+..  ...+.+++|+|++..++
T Consensus       193 ~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~la  253 (319)
T 3frx_A          193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFSPNRYWLA  253 (319)
T ss_dssp             CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC--CSCEEEEEECSSSSEEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC--CCcEEEEEEcCCCCEEE
Confidence            46888999999999999999999999999999999888877774  56899999999998875

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.56  E-value=1.3e-13  Score=63.34  Aligned_cols=61  Identities=28%  Similarity=0.405  Sum_probs=48.6

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCC-------CceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTED-------FSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |...|.++.|+|+++.+++++.|+.+++|+...       ...+..+.+ |...|.+++|+|+++++++
T Consensus        57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~g~~las  124 (330)
T 2hes_X           57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG-HENEVKGVAWSNDGYYLAT  124 (330)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEE
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC-CCCcEEEEEECCCCCEEEE
Confidence            888999999999999999999999999999853       234556666 8999999999999998874

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.56  E-value=1.2e-13  Score=63.32  Aligned_cols=64  Identities=19%  Similarity=0.197  Sum_probs=54.9

Q ss_pred             CCccccceEEEEECCC---CCEEEEecCCCcEEEEECCC-CceE-EEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPD---CRLLATTSADQTARIWNTED-FSLV-RELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +.+|.+.|.++.|+|+   ++.+++++.++.+++|++.+ +..+ ..+.. |...|.+++|+|+++++++
T Consensus        35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s  103 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM-HTGPVLDVCWSDDGSKVFT  103 (368)
T ss_dssp             SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEE-CSSCEEEEEECTTSSEEEE
T ss_pred             ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecc-ccCCEEEEEECcCCCEEEE
Confidence            3578999999999998   58999999999999999986 5554 55666 8999999999999998864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.56  E-value=1e-13  Score=71.33  Aligned_cols=63  Identities=24%  Similarity=0.351  Sum_probs=58.7

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...|.++.|+|+++.+++++.++.+++|+..++..+..+.. |...|.+++|+|+++++++
T Consensus       612 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s  674 (1249)
T 3sfz_A          612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA-HEDEVLCCAFSSDDSYIAT  674 (1249)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEE
T ss_pred             ecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEecc-CCCCEEEEEEecCCCEEEE
Confidence            46889999999999999999999999999999999999888888 8999999999999998874

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.56  E-value=8.4e-14  Score=66.15  Aligned_cols=63  Identities=13%  Similarity=0.076  Sum_probs=54.4

Q ss_pred             CccccceEEEEECCC-CCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPD-CRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...|..+.|+|+ +..+++++.++.+++|+++++........ |...+.+++|+|+++++++
T Consensus       146 ~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~-~~~~v~~v~wspdg~~las  209 (434)
T 2oit_A          146 KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP-STVAVTSVCWSPKGKQLAV  209 (434)
T ss_dssp             CSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC-GGGCEEEEEECTTSSCEEE
T ss_pred             CCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC-CCCceeEEEEcCCCCEEEE
Confidence            457889999999997 78999999999999999998866655555 7889999999999988864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.56  E-value=4.9e-14  Score=65.28  Aligned_cols=60  Identities=25%  Similarity=0.287  Sum_probs=51.5

Q ss_pred             CccccceEEEEECCCC-CEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061           2 AAHRAYGLHCVFSPDC-RLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      .+|...|.++.|+|++ +++++++.|+.+++|+...++.. .+.+ |...|.+++|+|++..+
T Consensus       254 ~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~-H~~~V~~v~~sp~~~~l  314 (344)
T 4gqb_B          254 AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQA-HRDFVRDATWSPLNHSL  314 (344)
T ss_dssp             ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECC-CSSCEEEEEECSSSTTE
T ss_pred             cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcC-CCCCEEEEEEeCCCCeE
Confidence            4688899999999987 57899999999999999887765 4566 89999999999998654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.55  E-value=4.9e-14  Score=69.95  Aligned_cols=63  Identities=19%  Similarity=0.215  Sum_probs=58.2

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|.+.|.+++|+|+++++++++.++.+++|+..++..+..+.. |...|.+++|+|+++++++
T Consensus        10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~   72 (814)
T 3mkq_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQV-TETPVRAGKFIARKNWIIV   72 (814)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGTEEEE
T ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEec-CCCcEEEEEEeCCCCEEEE
Confidence            46889999999999999999999999999999999998888888 8999999999999998864

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.55  E-value=2.1e-14  Score=67.22  Aligned_cols=63  Identities=14%  Similarity=0.090  Sum_probs=54.4

Q ss_pred             CCccccceEEEEECC--------CCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCc-EEe
Q psy7061           1 MAAHRAYGLHCVFSP--------DCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK-FLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~i~   64 (65)
                      +.+|.+.|..++|+|        +++.+++++.|+.+++|++..+..+..+.. |...+.+++|+|++. .++
T Consensus       132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~  203 (393)
T 4gq1_A          132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYP-LSSPGISVQFRPSNPNQLI  203 (393)
T ss_dssp             TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEE-CSSCEEEEEEETTEEEEEE
T ss_pred             cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecC-CCCCcEEEEECCCCCceEE
Confidence            467999999999987        678999999999999999988877777777 788999999999875 443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.54  E-value=3.7e-13  Score=62.99  Aligned_cols=58  Identities=28%  Similarity=0.463  Sum_probs=53.5

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .|.++.|+|+++.+++++.++.+++|++.+++.+..+.. |...|.+++|+|+++.+++
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s  182 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVS  182 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEE
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc-CCCCEEEEEEcCCCCEEEE
Confidence            488999999999999999999999999999988888888 8999999999999988864

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.54  E-value=5.5e-14  Score=64.21  Aligned_cols=64  Identities=20%  Similarity=0.284  Sum_probs=50.1

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCc--eEEEeeccCCCcEeEEEEcc--CCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFS--LVRELGTANQRWVWDAAFTL--DSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~--~~~~i~s   65 (65)
                      +.+|...|.++.|+|+++.+++++.|+.+++|++..+.  .+..+.+ |...|.+++|+|  +++.++|
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~g-H~~~V~~v~~~~~~~~~~l~s   76 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRG-HEGPVWQVAWAHPMYGNILAS   76 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEEC-CSSCEEEEEECCGGGSSCEEE
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcC-CCccEEEEEeCCCCCCCEEEE
Confidence            35799999999999999999999999999999998664  3556777 899999999975  3666653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.53  E-value=2e-13  Score=63.78  Aligned_cols=62  Identities=26%  Similarity=0.316  Sum_probs=54.3

Q ss_pred             CccccceEEEEECC-CCCEEEEecCCCcEEEEECCCC-------ceEEEeeccCCCcEeEEEEccCC-cEEe
Q psy7061           2 AAHRAYGLHCVFSP-DCRLLATTSADQTARIWNTEDF-------SLVRELGTANQRWVWDAAFTLDS-KFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~-~~i~   64 (65)
                      .+|.+.|.++.|+| ++..+++++.|+.+++|++..+       ..+..+.. |...|.+++|+|++ ..++
T Consensus        78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~  148 (402)
T 2aq5_A           78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG-HTKRVGIVAWHPTAQNVLL  148 (402)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC-CSSCEEEEEECSSBTTEEE
T ss_pred             ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC-CCCeEEEEEECcCCCCEEE
Confidence            46889999999999 8899999999999999999876       55667777 89999999999997 4665

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.53  E-value=1.1e-13  Score=62.40  Aligned_cols=63  Identities=24%  Similarity=0.295  Sum_probs=56.8

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +.+|.+.|.++.| +++..+++++.++.+++|++.++.....+.. |...+.+++|+|+++.+++
T Consensus        14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~   76 (313)
T 3odt_A           14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYT-GQGFLNSVCYDSEKELLLF   76 (313)
T ss_dssp             ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEE-CSSCEEEEEEETTTTEEEE
T ss_pred             hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeec-CCccEEEEEECCCCCEEEE
Confidence            3579999999999 8899999999999999999998888878887 8999999999999998863

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.53  E-value=1.4e-13  Score=64.10  Aligned_cols=64  Identities=20%  Similarity=0.269  Sum_probs=53.8

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeecc------CCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTA------NQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|.+.|.++.|+|+++.+++++.|+.+++|+++++..+..+..+      +...+.+++|+|+++++++
T Consensus       246 ~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  315 (380)
T 3iz6_a          246 HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFA  315 (380)
T ss_dssp             CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEE
T ss_pred             CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEE
Confidence            468889999999999999999999999999999998887766541      1234889999999998864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.53  E-value=7.4e-14  Score=64.22  Aligned_cols=63  Identities=25%  Similarity=0.349  Sum_probs=54.5

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECC--CCceEEEeeccCCCcEeEEEEccC--CcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTE--DFSLVRELGTANQRWVWDAAFTLD--SKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~--~~~i~s   65 (65)
                      .+|...|.++.|+|+++.+++++.++.+++|++.  ....+..+.. |...|.+++|+++  ++++++
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s   74 (379)
T 3jrp_A            8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILAS   74 (379)
T ss_dssp             EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEE
T ss_pred             cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecC-CCCcEEEEEeCCCCCCCEEEE
Confidence            5799999999999999999999999999999997  4556666777 8999999999876  777763

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.53  E-value=1.8e-13  Score=63.92  Aligned_cols=63  Identities=14%  Similarity=0.281  Sum_probs=56.2

Q ss_pred             CccccceEEEEECCCC-CEEEEecCCCcEEEEECCCCceEEEe--eccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDC-RLLATTSADQTARIWNTEDFSLVREL--GTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...|.++.|+|++ ..+++++.++.+++|++.+++.+..+  .. |...+.+++|+|+++.+++
T Consensus       128 ~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~  193 (402)
T 2aq5_A          128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV-HPDTIYSVDWSRDGALICT  193 (402)
T ss_dssp             ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTT-CCSCEEEEEECTTSSCEEE
T ss_pred             cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCC-CCCceEEEEECCCCCEEEE
Confidence            3588899999999997 68999999999999999999888888  56 8899999999999988764

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.52  E-value=4.1e-13  Score=62.20  Aligned_cols=63  Identities=16%  Similarity=0.208  Sum_probs=56.0

Q ss_pred             CccccceEEEEECC--CCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSP--DCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...+.++.++|  +++.+++++.|+.+++|+++++..+..+.. |...|.+++|+|++..+++
T Consensus       193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s  257 (354)
T 2pbi_B          193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET-HESDVNSVRYYPSGDAFAS  257 (354)
T ss_dssp             ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEE
T ss_pred             cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCCCeEEEEEeCCCCEEEE
Confidence            36788899999987  467999999999999999999998888888 8999999999999988864

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.52  E-value=4.3e-13  Score=61.48  Aligned_cols=63  Identities=25%  Similarity=0.352  Sum_probs=56.1

Q ss_pred             CccccceEEEEECC-CCCEEEEecCCCcEEEEECCCCceEEEe---eccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSP-DCRLLATTSADQTARIWNTEDFSLVREL---GTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...|.++.|+| ++..+++++.++.+++|++++++.+..+   .. |...+.+++|+|++..+++
T Consensus       112 ~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~  178 (366)
T 3k26_A          112 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG-HRDEVLSADYDLLGEKIMS  178 (366)
T ss_dssp             ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTS-CSSCEEEEEECTTSSEEEE
T ss_pred             cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccc-ccCceeEEEECCCCCEEEE
Confidence            35888999999999 8899999999999999999998888777   45 8899999999999988864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.52  E-value=5.1e-13  Score=61.99  Aligned_cols=58  Identities=10%  Similarity=0.100  Sum_probs=54.1

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCc
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK   61 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   61 (65)
                      +|...|.++.|+|+++.+++++.++.+++|++.++..+..+.. |...+.+++|+|++.
T Consensus       137 ~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~~~  194 (357)
T 4g56_B          137 EHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA-HSSEVNCVAACPGKD  194 (357)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTCS
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEccCCC
Confidence            5788999999999999999999999999999999999988888 899999999999875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.51  E-value=7.7e-14  Score=64.47  Aligned_cols=63  Identities=13%  Similarity=0.071  Sum_probs=50.0

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCc---eEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFS---LVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...|.++.|+|+++.+++++.++.+++|++..+.   ....+.. |...+.+++|+|+++.+++
T Consensus        52 ~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~  117 (377)
T 3dwl_C           52 SDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLR-LNRAATFVRWSPNEDKFAV  117 (377)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCC-CSSCEEEEECCTTSSCCEE
T ss_pred             ecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecc-cCCceEEEEECCCCCEEEE
Confidence            5688899999999999999999999999999998766   5556666 8899999999999887763

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.51  E-value=2.4e-13  Score=61.68  Aligned_cols=63  Identities=22%  Similarity=0.404  Sum_probs=53.2

Q ss_pred             CccccceEEEEECCCC----CEEEEecCCCcEEEEECCCC----------------------------------------
Q psy7061           2 AAHRAYGLHCVFSPDC----RLLATTSADQTARIWNTEDF----------------------------------------   37 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----------------------------------------   37 (65)
                      .+|...|.++.|+|++    +.+++++.|+.+++|++..+                                        
T Consensus       211 ~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
T 3f3f_A          211 PGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAEL  290 (351)
T ss_dssp             CCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------
T ss_pred             CCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeee
Confidence            4688899999999987    78999999999999998754                                        


Q ss_pred             ------ceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061          38 ------SLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus        38 ------~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                            ..+..+.. |...|.+++|+|+++++++
T Consensus       291 ~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s  323 (351)
T 3f3f_A          291 QSNLQVELLSEHDD-HNGEVWSVSWNLTGTILSS  323 (351)
T ss_dssp             CCSEEEEEEEEECT-TSSCEEEEEECSSSCCEEE
T ss_pred             cccccccEEEEEec-ccccEEEEEEcCCCCEEEE
Confidence                  44555566 8899999999999988764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.50  E-value=4.1e-13  Score=61.78  Aligned_cols=62  Identities=15%  Similarity=0.141  Sum_probs=52.9

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCCCceE-EEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLV-RELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +...+.++.|+|++..+++++.++.+++|+++++... ..+...|...|.+++|+|++.++++
T Consensus       169 ~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s  231 (343)
T 3lrv_A          169 SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV  231 (343)
T ss_dssp             SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEE
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEE
Confidence            4446889999999999999999999999999988766 4554437899999999999998874

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.50  E-value=5.6e-13  Score=61.40  Aligned_cols=64  Identities=22%  Similarity=0.327  Sum_probs=53.7

Q ss_pred             CCccccceEEEEE-----CC-CCCEEEEecCCCcEEEEECCCC-------ceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVF-----SP-DCRLLATTSADQTARIWNTEDF-------SLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |++|...|.++.|     ++ +++.+++++.|+.+++|++...       .....+.+ |...|.+++|+|++.++++
T Consensus        17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~~~~~~~l~s   93 (343)
T 2xzm_R           17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG-HNHFVSDLALSQENCFAIS   93 (343)
T ss_dssp             EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC-CSSCEEEEEECSSTTEEEE
T ss_pred             eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhcc-CCCceEEEEECCCCCEEEE
Confidence            4579999999999     66 7899999999999999998743       34455666 8999999999999988764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.48  E-value=9.3e-13  Score=60.60  Aligned_cols=62  Identities=16%  Similarity=0.155  Sum_probs=56.4

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+|...+..+.|+|+++.+++++.++.+++|++++++.+..+.. +...+.+++|+|++++++
T Consensus       199 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~  260 (372)
T 1k8k_C          199 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS-ETLPLLAVTFITESSLVA  260 (372)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC-SSCCEEEEEEEETTEEEE
T ss_pred             CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc-CCCCeEEEEEecCCCEEE
Confidence            35777899999999999999999999999999999998888888 888999999999998876

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.48  E-value=7.6e-13  Score=60.03  Aligned_cols=63  Identities=17%  Similarity=0.218  Sum_probs=51.9

Q ss_pred             CCccccceEEEEECCC--CCEEEEecCCCcEEEEECCCCc--eEEEeeccCCCcEeEEEEccC--CcEEe
Q psy7061           1 MAAHRAYGLHCVFSPD--CRLLATTSADQTARIWNTEDFS--LVRELGTANQRWVWDAAFTLD--SKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~i~   64 (65)
                      |.+|.+.|.++.|+++  ++.+++++.|+.+++|++.++.  .+..+.. |...|.+++|+|+  +..++
T Consensus        49 l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~g~~l~  117 (297)
T 2pm7_B           49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPMLL  117 (297)
T ss_dssp             ECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECC-CSSCEEEEEECCGGGCSEEE
T ss_pred             EccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeec-CCCceeEEEeCcCCCCcEEE
Confidence            3578999999999864  7899999999999999998763  4445566 8899999999997  66665

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.48  E-value=5.9e-13  Score=62.03  Aligned_cols=61  Identities=20%  Similarity=0.410  Sum_probs=55.7

Q ss_pred             ccccceEEEEECC-CCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCC-cEEe
Q psy7061           3 AHRAYGLHCVFSP-DCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS-KFLL   64 (65)
Q Consensus         3 ~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~i~   64 (65)
                      +|...+..+.|+| +++.+++++.++.+++|++.+++.+..+.. |...+.+++|+|++ ..++
T Consensus       260 ~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~l~  322 (416)
T 2pm9_A          260 GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA-RGNWCFKTKFAPEAPDLFA  322 (416)
T ss_dssp             CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC-SSSCCCCEEECTTCTTEEE
T ss_pred             CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC-CCCceEEEEECCCCCCEEE
Confidence            6888999999999 889999999999999999999999888888 88999999999998 6665

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.48  E-value=7.1e-13  Score=60.59  Aligned_cols=64  Identities=22%  Similarity=0.419  Sum_probs=51.6

Q ss_pred             CCccccceEEEEECCCC----CEEEEecCCCcEEEEECCCCc----eEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDC----RLLATTSADQTARIWNTEDFS----LVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +.+|...|.++.|+|++    ..+++++.|+.+++|++....    ....+.. |...|.+++|+|+++++++
T Consensus       208 l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~g~~las  279 (316)
T 3bg1_A          208 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHK-FNDVVWHVSWSITANILAV  279 (316)
T ss_dssp             CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEE-CSSCEEEEEECTTTCCEEE
T ss_pred             cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhc-CCCcEEEEEEcCCCCEEEE
Confidence            35688899999999976    789999999999999987521    1223445 7889999999999988864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.47  E-value=1.4e-13  Score=63.66  Aligned_cols=62  Identities=15%  Similarity=0.082  Sum_probs=53.9

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCce----EEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSL----VRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +|...|.++.|+|+++.+++++.++.+++|++.++..    +..+.. |...+.+++|+|+++++++
T Consensus       203 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~  268 (377)
T 3dwl_C          203 PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKL-SQLPLRSLLWANESAIVAA  268 (377)
T ss_dssp             CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEEC-SSSCEEEEEEEETTEEEEE
T ss_pred             cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecC-CCCceEEEEEcCCCCEEEE
Confidence            5777899999999999999999999999999998776    666777 8899999999999988863

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.47  E-value=7.5e-13  Score=60.91  Aligned_cols=62  Identities=16%  Similarity=0.116  Sum_probs=55.5

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCc--eEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFS--LVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .|...|.++.|+|+++.+++++.++.+++|++..++  .+..+.. |...+.+++|+|+++++++
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~   69 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVT   69 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEE
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecC-CCCcccEEEEeCCCCEEEE
Confidence            477889999999999999999999999999998876  7777777 8999999999999998864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.47  E-value=1e-12  Score=61.75  Aligned_cols=62  Identities=15%  Similarity=0.249  Sum_probs=52.4

Q ss_pred             ccccceEEEEECCCC-CEEEEecCCCcEEEEECCCCce----EEEeeccCCC------------cEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDC-RLLATTSADQTARIWNTEDFSL----VRELGTANQR------------WVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------------~v~~~~~~~~~~~i~s   65 (65)
                      +|...|.++.|+|++ +.+++++.++.+++|+++.+..    ...+.. +..            .+.+++|+|+++++++
T Consensus       224 ~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  302 (447)
T 3dw8_B          224 ELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEE-PEDPSNRSFFSEIISSISDVKFSHSGRYMMT  302 (447)
T ss_dssp             GCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECC-C-----CCHHHHHTTCEEEEEECTTSSEEEE
T ss_pred             ccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEecc-CCCccccccccccCceEEEEEECCCCCEEEE
Confidence            577889999999998 8999999999999999998775    566666 554            8999999999998874

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.46  E-value=5.5e-13  Score=66.31  Aligned_cols=63  Identities=13%  Similarity=0.130  Sum_probs=57.6

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...|.++.|+|+++.+++++.++.+++|++.+++.+..+.. |...+.+++|+|+++.+++
T Consensus        52 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~  114 (814)
T 3mkq_A           52 QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA-HPDYIRSIAVHPTKPYVLS  114 (814)
T ss_dssp             ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSEEEE
T ss_pred             ecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCCEEEEEEeCCCCEEEE
Confidence            35788999999999999999999999999999999999888888 8999999999999988763

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.46  E-value=7.1e-13  Score=62.65  Aligned_cols=62  Identities=10%  Similarity=0.012  Sum_probs=49.7

Q ss_pred             ccccceEEEEECC-CCCEEEEecCCCcEEEEECCCCceE--EEeeccCCCcEeEEEEcc-CCcEEeC
Q psy7061           3 AHRAYGLHCVFSP-DCRLLATTSADQTARIWNTEDFSLV--RELGTANQRWVWDAAFTL-DSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~i~s   65 (65)
                      +|...|++++|+| ++..+++|+.|+.|++|++..+...  ..+.+ |...|.+++|+| ++.+++|
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~g-H~~~V~~l~f~p~~~~~l~s  182 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIG-AGGSITGLKFNPLNTNQFYA  182 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCS-SSCCCCEEEECSSCTTEEEE
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccC-CCCCEEEEEEeCCCCCEEEE
Confidence            3667799999999 5678999999999999999865433  33445 899999999998 5777764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.45  E-value=3.2e-12  Score=58.09  Aligned_cols=62  Identities=18%  Similarity=0.246  Sum_probs=55.8

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +|...+..+.|+|+++.+++++.++.+++|++.+++.+..+.. |...+.+++|+|+++.+++
T Consensus       139 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~  200 (337)
T 1gxr_A          139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISNDGTKLWT  200 (337)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEE
T ss_pred             cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec-ccCceEEEEECCCCCEEEE
Confidence            4667899999999999999999999999999999988888887 8899999999999988763

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.45  E-value=3.2e-12  Score=61.89  Aligned_cols=64  Identities=9%  Similarity=0.043  Sum_probs=56.6

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEcc----------CCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL----------DSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------~~~~i~s   65 (65)
                      .+|...+.++.|+|+++.+++++.++.+++|++.+++.+..+...|...+.+++|+|          +++++++
T Consensus       485 ~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~  558 (615)
T 1pgu_A          485 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT  558 (615)
T ss_dssp             SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEE
T ss_pred             CCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEE
Confidence            457889999999999999999999999999999998887776644789999999999          8988864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.45  E-value=3.8e-12  Score=58.38  Aligned_cols=61  Identities=16%  Similarity=0.145  Sum_probs=55.1

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+|...|.++.|+|+++.+++++.++.+++|++.+++.+..+.  +...+.+++|+|+++.++
T Consensus        71 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~  131 (369)
T 3zwl_B           71 DGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFL  131 (369)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEE
T ss_pred             hhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEE
Confidence            4688899999999999999999999999999999988887776  678899999999998876

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.45  E-value=9e-13  Score=67.04  Aligned_cols=61  Identities=11%  Similarity=-0.038  Sum_probs=52.0

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCc--------------------------------------------
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFS--------------------------------------------   38 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------   38 (65)
                      +|...|.+++|+|+++.+++++.|+.|++|++.+++                                            
T Consensus       486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  565 (902)
T 2oaj_A          486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF  565 (902)
T ss_dssp             SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred             CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence            577889999999999999999999999999987542                                            


Q ss_pred             -eEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061          39 -LVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus        39 -~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                       .+..+.. |...|.+++|+|+| ++++
T Consensus       566 ~~~~~l~~-h~~~V~svafSpdG-~lAs  591 (902)
T 2oaj_A          566 MPSTAVHA-NKGKTSAINNSNIG-FVGI  591 (902)
T ss_dssp             EEEEEECC-CSCSEEEEEECBTS-EEEE
T ss_pred             ceeEEEEc-CCCcEEEEEecCCc-EEEE
Confidence             2455666 89999999999999 7763

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.44  E-value=2e-12  Score=62.56  Aligned_cols=60  Identities=18%  Similarity=0.226  Sum_probs=54.2

Q ss_pred             cccceEEEEECC----------CCCEEEEecCCCcEEEEECCCC-ceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           4 HRAYGLHCVFSP----------DCRLLATTSADQTARIWNTEDF-SLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         4 ~~~~v~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |...|..+.|+|          +++.+++++.++.+++|++.++ ..+..+.. |...|.+++|+|+++ +++
T Consensus       530 h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~-l~s  600 (615)
T 1pgu_A          530 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA-HKDGVNNLLWETPST-LVS  600 (615)
T ss_dssp             CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS-STTCEEEEEEEETTE-EEE
T ss_pred             CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhc-CccceEEEEEcCCCC-eEE
Confidence            888999999999          9999999999999999999987 67777777 899999999999998 653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.44  E-value=3.1e-12  Score=58.89  Aligned_cols=63  Identities=11%  Similarity=-0.109  Sum_probs=52.6

Q ss_pred             ccccceEEEEECC--CCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSP--DCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +|...|.++.|+|  +++.+++++.++.+++|++.+++.......++...+.+++|+|++.++++
T Consensus       123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~las  187 (343)
T 3lrv_A          123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLAL  187 (343)
T ss_dssp             CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEE
T ss_pred             CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEE
Confidence            3557799999999  99999999999999999999888866654435667999999999998874

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.44  E-value=4.1e-12  Score=58.99  Aligned_cols=56  Identities=18%  Similarity=0.321  Sum_probs=52.2

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEee------ccC---------------CCcEeEEEEccCC
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELG------TAN---------------QRWVWDAAFTLDS   60 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---------------~~~v~~~~~~~~~   60 (65)
                      |...+..+.|+|+++.+++++.++.+++|++.+++.+..+.      . |               ...|.+++|+|++
T Consensus       290 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~~~~~~~~g  366 (397)
T 1sq9_A          290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE-IEEDILAVDEHGDSLAEPGVFDVKFLKKG  366 (397)
T ss_dssp             BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS-SGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred             cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCccc-chhhhhccccccccccCCceeEEEecccc
Confidence            78899999999999999999999999999999998888888      6 6               8999999999998

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.44  E-value=2.8e-12  Score=59.73  Aligned_cols=58  Identities=21%  Similarity=0.216  Sum_probs=48.2

Q ss_pred             cceEEEEECCCCCEEE--EecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           6 AYGLHCVFSPDCRLLA--TTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ..+..++|+|+|+.++  +++.++.+++|++.++..+..+.  |...|.+++|+|+++++++
T Consensus       134 ~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspdg~~l~s  193 (365)
T 4h5i_A          134 DYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTDGKVVAY  193 (365)
T ss_dssp             CCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSSEEEE
T ss_pred             cCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC--CCCceEEEEEccCCceEEe
Confidence            3467899999998765  45578999999999998887775  5678999999999998864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.43  E-value=3.8e-12  Score=57.58  Aligned_cols=61  Identities=18%  Similarity=0.234  Sum_probs=52.0

Q ss_pred             cccceEEEEECCCCCEEEEe--cCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           4 HRAYGLHCVFSPDCRLLATT--SADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +...+..+.|.+++..++++  ..++.+++|++++++.+..+.+ |...|.+++|+|++++|+|
T Consensus       239 ~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g-H~~~V~~l~~spdg~~l~S  301 (318)
T 4ggc_A          239 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-HTSRVLSLTMSPDGATVAS  301 (318)
T ss_dssp             CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSCEEE
T ss_pred             ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCEEEE
Confidence            34567888999988766544  4789999999999999999998 9999999999999998875

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.43  E-value=2.2e-12  Score=60.40  Aligned_cols=61  Identities=16%  Similarity=0.097  Sum_probs=54.5

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      .+|.+.|..+.|+|+++.+++++.++.+++|++..+.....+.. |...+.+++|+|++..+
T Consensus       214 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l  274 (401)
T 4aez_A          214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN-HNAAVKAVAWCPWQSNL  274 (401)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC-CSSCCCEEEECTTSTTE
T ss_pred             cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC-CcceEEEEEECCCCCCE
Confidence            35788999999999999999999999999999999888888887 88999999999976544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.43  E-value=1.8e-12  Score=60.20  Aligned_cols=63  Identities=10%  Similarity=0.089  Sum_probs=53.2

Q ss_pred             CccccceEEEEECCCC-CEEEEecCCCcEEEEECCCCceEEEeec-cCCCcEeEEEEcc-CCcEEe
Q psy7061           2 AAHRAYGLHCVFSPDC-RLLATTSADQTARIWNTEDFSLVRELGT-ANQRWVWDAAFTL-DSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~i~   64 (65)
                      .+|...|.++.|+|++ +.+++++.++.+++|++..+.....+.. .|...|.+++|+| ++..++
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  135 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF  135 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence            4688899999999998 8999999999999999997776655542 3889999999999 666665

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.43  E-value=6.1e-12  Score=58.57  Aligned_cols=60  Identities=15%  Similarity=0.224  Sum_probs=52.7

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |...|.++.|+|+++.+++++.++.+++|+ ..+..+..+.. |...+.+++|+|+++.+++
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~  166 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNF-HRAPIVSVKWNKDGTHIIS  166 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECC-CCSCEEEEEECTTSSEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccC-CCccEEEEEECCCCCEEEE
Confidence            677899999999999999999999999999 56777777777 8999999999999988763

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.43  E-value=6.7e-13  Score=66.30  Aligned_cols=64  Identities=25%  Similarity=0.340  Sum_probs=53.6

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECC--CCceEEEeeccCCCcEeEEEEccC--CcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTE--DFSLVRELGTANQRWVWDAAFTLD--SKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~--~~~i~s   65 (65)
                      +.+|.+.|.++.|+|+++.+++++.++.+++|++.  .......+.. |...|.+++|+|+  ++.+++
T Consensus         5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s   72 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILAS   72 (753)
T ss_dssp             ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECC-CSSCEEEEEECCTTSCSEEEE
T ss_pred             cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccC-CcCceEEEEecCCCCCCEEEE
Confidence            46899999999999999999999999999999987  4456666777 8999999999987  777764

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.42  E-value=7.7e-12  Score=57.02  Aligned_cols=61  Identities=21%  Similarity=0.292  Sum_probs=53.7

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+|.+.|.++.|+|+++.+++++.|+.+++|++.....+..+..  ...+..++|+|++..++
T Consensus       212 ~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~  272 (340)
T 4aow_A          212 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG--GDIINALCFSPNRYWLC  272 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC--SSCEEEEEECSSSSEEE
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC--CceEEeeecCCCCceee
Confidence            46888999999999999999999999999999999888877774  56899999999987664

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.42  E-value=8.6e-12  Score=61.75  Aligned_cols=62  Identities=24%  Similarity=0.412  Sum_probs=55.8

Q ss_pred             ccccceEEEEECCCC--CEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDC--RLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +|...|.++.|+|++  ..+++++.++.+++|+++.......+.. |...|.+++|+|+++++++
T Consensus       515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~-h~~~v~~v~~spdg~~l~s  578 (694)
T 3dm0_A          515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG-HTGYVSTVAVSPDGSLCAS  578 (694)
T ss_dssp             SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEE
T ss_pred             CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEeCCCCEEEE
Confidence            577889999999976  5799999999999999999888888888 8999999999999998874

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.41  E-value=3.3e-12  Score=59.82  Aligned_cols=62  Identities=15%  Similarity=0.211  Sum_probs=54.8

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEcc------CCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL------DSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~i~s   65 (65)
                      +|...|..+.|++++.++++++.|+.+++|+..++..+..+.+ |...|.+++|++      ++..++|
T Consensus       308 ~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~-h~~~v~~v~~~~~~~~~p~~~~l~s  375 (393)
T 1erj_A          308 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG-HRNSVISVAVANGSSLGPEYNVFAT  375 (393)
T ss_dssp             CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred             cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECC-CCCCEEEEEecCCcCcCCCCCEEEE
Confidence            5778899999999999999999999999999999999888888 899999999886      5666653

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.41  E-value=3.9e-12  Score=58.57  Aligned_cols=62  Identities=18%  Similarity=0.206  Sum_probs=53.6

Q ss_pred             CccccceEEEEECCC--CCEEEEecCCCcEEEEECCCCc--eEEEeeccCCCcEeEEEEccC--CcEEe
Q psy7061           2 AAHRAYGLHCVFSPD--CRLLATTSADQTARIWNTEDFS--LVRELGTANQRWVWDAAFTLD--SKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~i~   64 (65)
                      .+|...|.++.|+++  ++.+++++.++.+++|++..+.  .+..+.. |...+.+++|+|+  +..++
T Consensus        52 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~  119 (379)
T 3jrp_A           52 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPLLL  119 (379)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEE
T ss_pred             cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecC-CCcceEEEEeCCCCCCCEEE
Confidence            468889999999987  8999999999999999999876  5556666 8899999999999  77765

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.41  E-value=2.2e-12  Score=58.89  Aligned_cols=63  Identities=14%  Similarity=0.066  Sum_probs=53.3

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCc---eEEEeeccCCCcEeEEEEccCCc-EEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFS---LVRELGTANQRWVWDAAFTLDSK-FLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~i~s   65 (65)
                      .+|.+.|.++.|+|+++.+++++.++.+++|++..+.   ....... |...+.+++|+|+++ .+++
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~   74 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDLQIYV   74 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE-CSSCEEEEEEEESSSEEEEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeee-cCCceEEEEECCCCCcEEEE
Confidence            4688999999999999999999999999999998766   2334445 889999999999998 7753

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.41  E-value=3.7e-12  Score=59.09  Aligned_cols=64  Identities=13%  Similarity=0.072  Sum_probs=51.7

Q ss_pred             CCccccceEEEEECC-CCCEEEEecCCCcEEEEECCCCceEEEee------------ccCCCcEeEEEEcc-CCcEEe
Q psy7061           1 MAAHRAYGLHCVFSP-DCRLLATTSADQTARIWNTEDFSLVRELG------------TANQRWVWDAAFTL-DSKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~v~~~~~~~-~~~~i~   64 (65)
                      +.+|.+.|.++.|+| +++.+++++.++.+++|++.++.......            ..|...|.+++|+| ++..++
T Consensus        39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  116 (408)
T 4a11_B           39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT  116 (408)
T ss_dssp             CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred             eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence            356899999999999 99999999999999999998765433332            12789999999999 665554

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.41  E-value=6.7e-12  Score=56.62  Aligned_cols=61  Identities=18%  Similarity=0.370  Sum_probs=53.9

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+|...+..+.|+|++ .+++++.++.+++|++.+++....+.. +...+.+++|+|++++++
T Consensus       222 ~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~  282 (313)
T 3odt_A          222 EGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITL-PAISIWSVDCMSNGDIIV  282 (313)
T ss_dssp             ECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEEC-SSSCEEEEEECTTSCEEE
T ss_pred             hcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEec-cCceEEEEEEccCCCEEE
Confidence            3577889999999988 588899999999999999998888888 888999999999998654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.40  E-value=7.2e-12  Score=59.02  Aligned_cols=59  Identities=19%  Similarity=0.258  Sum_probs=51.5

Q ss_pred             cceEEEEECCCCCEEEEec--CCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           6 AYGLHCVFSPDCRLLATTS--ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ..+..+.|++++..+++++  .++.+++|++.++..+..+.+ |...|.+++|+|++++|+|
T Consensus       321 ~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g-H~~~V~~l~~spdg~~l~S  381 (420)
T 4gga_A          321 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-HTSRVLSLTMSPDGATVAS  381 (420)
T ss_dssp             SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSCEEE
T ss_pred             cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCEEEE
Confidence            4678888999888776544  689999999999999999998 9999999999999998875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.40  E-value=1.3e-11  Score=56.10  Aligned_cols=62  Identities=18%  Similarity=0.240  Sum_probs=53.8

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ..|...+..+.|+|+++.+++++.++.+++|++.++.......  +...+.+++|+|+++++++
T Consensus       262 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~  323 (337)
T 1gxr_A          262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISVDDKYIVT  323 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSCEEEE
T ss_pred             cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec--CCCcEEEEEECCCCCEEEE
Confidence            3577889999999999999999999999999999888775443  6889999999999988763

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.40  E-value=4.9e-12  Score=58.74  Aligned_cols=62  Identities=37%  Similarity=0.578  Sum_probs=53.0

Q ss_pred             CccccceEEEEECCCCC-EEEEecCCCcEEEEECCC----CceEEEeeccCCCcEeEEEEcc-CCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCR-LLATTSADQTARIWNTED----FSLVRELGTANQRWVWDAAFTL-DSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~i~s   65 (65)
                      .+|...|.++.|+|+++ .+++++.++.+++|+++.    ...+..+ . |...+.+++|+| +++++++
T Consensus       201 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~~l~~  268 (383)
T 3ei3_B          201 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-P-HEKPVNAAYFNPTDSTKLLT  268 (383)
T ss_dssp             ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-E-CSSCEEEEEECTTTSCEEEE
T ss_pred             ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-c-CCCceEEEEEcCCCCCEEEE
Confidence            35788999999999988 899999999999999986    4555555 4 889999999999 9988864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.40  E-value=5.2e-12  Score=58.65  Aligned_cols=62  Identities=11%  Similarity=0.069  Sum_probs=54.1

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCc------eEEEeeccCCCcEeEEEEccC----C---cEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFS------LVRELGTANQRWVWDAAFTLD----S---KFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~v~~~~~~~~----~---~~i~s   65 (65)
                      +.+|...|.+++|+|  +.+++++.++.+++|++....      ....+.. |...|.+++|+|+    +   +++++
T Consensus        12 ~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~g~~~~~l~s   86 (397)
T 1sq9_A           12 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVAT   86 (397)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             hhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEec-CCCcEEEEEEecccccCCccccEEEE
Confidence            467999999999988  789999999999999999876      6667777 8999999999999    8   77753

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.38  E-value=7.6e-12  Score=57.38  Aligned_cols=61  Identities=20%  Similarity=0.261  Sum_probs=54.0

Q ss_pred             cccceEEEEECCC----CCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEcc-CCcEEeC
Q psy7061           4 HRAYGLHCVFSPD----CRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL-DSKFLLT   65 (65)
Q Consensus         4 ~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~i~s   65 (65)
                      |...+.++.|+|+    +..+++++.++.+++|++.+++.+..+.. |...+.+++|+| ++..+++
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~s  133 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG-HGNAINELKFHPRDPNLLLS  133 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEES-CCSCEEEEEECSSCTTEEEE
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecC-CCCcEEEEEECCCCCCEEEE
Confidence            5567999999998    56899999999999999999998888888 899999999999 8887763

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.38  E-value=1.4e-12  Score=61.65  Aligned_cols=64  Identities=31%  Similarity=0.442  Sum_probs=52.1

Q ss_pred             CCccccceEEEEECCCCC-EEEEecCCCcEEEEECCCCceEEEe---eccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCR-LLATTSADQTARIWNTEDFSLVREL---GTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +.+|...|.++.|+|++. .+++++.|+.+++|+++.......+   .. |...|.+++|+|++.++++
T Consensus       246 ~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~spdg~~l~s  313 (435)
T 4e54_B          246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLT  313 (435)
T ss_dssp             SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCB-CSSCEEECCBCTTSSEEEE
T ss_pred             EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeee-ccccccceeECCCCCeeEE
Confidence            356888999999999875 6788999999999999865543332   34 7899999999999998874

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.38  E-value=9.4e-12  Score=59.06  Aligned_cols=63  Identities=10%  Similarity=0.112  Sum_probs=52.5

Q ss_pred             ccccceEEEEECCCCCEE-EEecCCCcEEEEECC--CCceEEEeec-cCCCcEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLL-ATTSADQTARIWNTE--DFSLVRELGT-ANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +|.+.|.++.|+|+++.+ ++++.++.+++|++.  .+..+..+.. .+...+.+++|+|+++++++
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  166 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVII  166 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEE
Confidence            355579999999999985 888899999999998  7777777653 26788999999999998863

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.37  E-value=2.2e-11  Score=57.40  Aligned_cols=56  Identities=11%  Similarity=0.236  Sum_probs=50.1

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEcc
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL   58 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   58 (65)
                      .+|...|.+++|+|+++.+++++.|+.+++|++.+++.+..+.. |...+.++++++
T Consensus       144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~-h~~~v~~~s~~~  199 (420)
T 4gga_A          144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS-HSARVGSLSWNS  199 (420)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEET
T ss_pred             cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC-CCCceEEEeeCC
Confidence            35777899999999999999999999999999999999988888 888898887754

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.37  E-value=1.2e-11  Score=58.12  Aligned_cols=60  Identities=13%  Similarity=0.112  Sum_probs=49.7

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCCCc-----------eEEEeeccCC------------CcEeEEEEccCC
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFS-----------LVRELGTANQ------------RWVWDAAFTLDS   60 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~------------~~v~~~~~~~~~   60 (65)
                      +.+.|.+++|+|+++.+++++.++.+++|++..+.           ....+.. |.            ..|.+++|+|++
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQS-HEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEEC-CCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccc-ccccccccccccccCceEEEEEcCCC
Confidence            46789999999999999999999999999998765           4566666 76            789999999997


Q ss_pred             --cEEe
Q psy7061          61 --KFLL   64 (65)
Q Consensus        61 --~~i~   64 (65)
                        ..++
T Consensus       106 ~~~~l~  111 (447)
T 3dw8_B          106 NAAQFL  111 (447)
T ss_dssp             SSSEEE
T ss_pred             CcceEE
Confidence              5554

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.37  E-value=3.7e-12  Score=59.95  Aligned_cols=62  Identities=15%  Similarity=0.116  Sum_probs=51.3

Q ss_pred             CccccceEEEEECC-CCCEEEEecCCCcEEEEECCC---Cce---EEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSP-DCRLLATTSADQTARIWNTED---FSL---VRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ++|.+.|.++.|+| +++.+++++.|+.+++|++..   +..   ...+ . |...|.+++|+|++..+++
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~-h~~~v~~~~~~~~~~~l~s  128 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-D-CSSTVTQITMIPNFDAFAV  128 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-E-CSSCEEEEEECTTSSEEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-c-CCCCEEEEEEeCCCCEEEE
Confidence            56889999999999 999999999999999999875   321   2222 3 7899999999999988764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.37  E-value=6e-12  Score=59.69  Aligned_cols=63  Identities=14%  Similarity=0.161  Sum_probs=54.3

Q ss_pred             CccccceEEEEECCC---CCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPD---CRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...|.++.|+|+   ++.+++++.++.+++|++..+..+..+...|...|.+++|+ +++++++
T Consensus       192 ~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s  257 (450)
T 2vdu_B          192 LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLS  257 (450)
T ss_dssp             EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEE
T ss_pred             ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEE
Confidence            357788999999999   88999999999999999998887777442288999999999 9988864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.36  E-value=2.1e-11  Score=56.79  Aligned_cols=62  Identities=13%  Similarity=0.157  Sum_probs=55.5

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...+..+.|+|++ .+++++.++.+++|++.++..+..+.. +...+.+++|+|+++++++
T Consensus       286 ~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~  347 (425)
T 1r5m_A          286 YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV-DGVPIFAGRISQDGQKYAV  347 (425)
T ss_dssp             CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC-TTCCEEEEEECTTSSEEEE
T ss_pred             cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc-CCccEEEEEEcCCCCEEEE
Confidence            3577889999999988 899999999999999999988888887 8899999999999998863

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.36  E-value=2.2e-11  Score=55.64  Aligned_cols=59  Identities=19%  Similarity=0.188  Sum_probs=52.7

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccC-CCcEeEEEEccCCcEEeC
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTAN-QRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~i~s   65 (65)
                      |...+..+.|+|+++.+++++.++.+++|++.+++.+..+.. | ...|.+++  |+++++++
T Consensus       250 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~~~--~~~~~l~s  309 (342)
T 1yfq_A          250 LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK-FNEDSVVKIA--CSDNILCL  309 (342)
T ss_dssp             SCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC-CSSSEEEEEE--ECSSEEEE
T ss_pred             cceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc-ccCCCceEec--CCCCeEEE
Confidence            455899999999999999999999999999999998888887 6 89999998  99988864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.35  E-value=2.6e-11  Score=62.76  Aligned_cols=58  Identities=34%  Similarity=0.446  Sum_probs=53.6

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS   60 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   60 (65)
                      .+|...|.++.|+|+++.+++++.++.+++|++.+++.+..+.. |...+.+++|+|++
T Consensus       654 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~  711 (1249)
T 3sfz_A          654 KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFTNKS  711 (1249)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSS
T ss_pred             ccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcC-CCCcEEEEEEecCC
Confidence            46888999999999999999999999999999999999988888 89999999999953

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.35  E-value=1.7e-11  Score=60.41  Aligned_cols=55  Identities=11%  Similarity=0.167  Sum_probs=46.9

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCc-------eEEEe----eccCCCcEeEEEEccCCcEE
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFS-------LVREL----GTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~----~~~~~~~v~~~~~~~~~~~i   63 (65)
                      .+.+++|+|+|+.+++++.|+.+++|++..+.       .+..+    .+ |...|.+++|+|++ .+
T Consensus       131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~g-h~~~V~sVawSPdg-La  196 (588)
T 2j04_A          131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAG-SKDWVTHIVWYEDV-LV  196 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTT-CCCCEEEEEEETTE-EE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccc-ccccEEEEEEcCCc-EE
Confidence            58899999999999999999999999999774       24555    34 67899999999998 44

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.34  E-value=6.2e-11  Score=55.05  Aligned_cols=63  Identities=22%  Similarity=0.235  Sum_probs=51.9

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCc-------------------------------------------
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFS-------------------------------------------   38 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------   38 (65)
                      .+|...+..+.|+|+++.+++++.++.+++|++.++.                                           
T Consensus       242 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~  321 (408)
T 4a11_B          242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTV  321 (408)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEET
T ss_pred             ccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEEC
Confidence            3577889999999999999999999999999987543                                           


Q ss_pred             ----eEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061          39 ----LVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus        39 ----~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                          .+..+.. |...|.+++|+|+++++++
T Consensus       322 ~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s  351 (408)
T 4a11_B          322 YSGEQITMLKG-HYKTVDCCVFQSNFQELYS  351 (408)
T ss_dssp             TTCCEEEEECC-CSSCEEEEEEETTTTEEEE
T ss_pred             cCCcceeeecc-CCCeEEEEEEcCCCCEEEE
Confidence                2334445 7889999999999998874

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.34  E-value=1.4e-11  Score=57.44  Aligned_cols=62  Identities=10%  Similarity=0.148  Sum_probs=52.8

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCC----CceEEEeeccCCCcEeEEEEccC-CcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTED----FSLVRELGTANQRWVWDAAFTLD-SKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~-~~~i~s   65 (65)
                      .|...|.++.|+|++..+++++.++.+++|++..    ...+..+.. |...|.+++|+|+ +.++++
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s  131 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSN-HSSSVKTVKFNAKQDNVLAS  131 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCC-SSSCCCEEEECSSSTTBEEE
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccC-CccceEEEEEcCCCCCEEEE
Confidence            3677899999999999999999999999999986    346667777 8999999999998 776653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.34  E-value=1.9e-11  Score=61.24  Aligned_cols=63  Identities=17%  Similarity=0.202  Sum_probs=54.3

Q ss_pred             CccccceEEEEECCC--CCEEEEecCCCcEEEEECCCCc--eEEEeeccCCCcEeEEEEccC--CcEEeC
Q psy7061           2 AAHRAYGLHCVFSPD--CRLLATTSADQTARIWNTEDFS--LVRELGTANQRWVWDAAFTLD--SKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~i~s   65 (65)
                      .+|.+.|.++.|+++  ++.+++++.|+.+++|++.++.  ....+.. |...+.+++|+|+  +..+++
T Consensus        50 ~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~~l~s  118 (753)
T 3jro_A           50 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPLLLV  118 (753)
T ss_dssp             CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEE
T ss_pred             cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccC-CCCCeEEEEECCCCCCCEEEE
Confidence            468899999999987  8999999999999999998876  5556666 8899999999998  777753

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.34  E-value=3.9e-11  Score=56.88  Aligned_cols=61  Identities=15%  Similarity=0.236  Sum_probs=53.6

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEc--cCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFT--LDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~i~   64 (65)
                      .+|.+.|.++.|++++ .+++++.++.+++|++.++..+..+.. |...+.+++|+  +++.+++
T Consensus       159 ~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~l~  221 (464)
T 3v7d_B          159 SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG-HNSTVRCLDIVEYKNIKYIV  221 (464)
T ss_dssp             CCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEEESSSCEEEE
T ss_pred             eCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECC-CCCccEEEEEecCCCCCEEE
Confidence            4688999999999877 899999999999999999998888888 89999999998  4666665

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.34  E-value=5.1e-12  Score=57.86  Aligned_cols=61  Identities=20%  Similarity=0.258  Sum_probs=51.8

Q ss_pred             ccccceEEEEECCCCC-EEEEecCCCcEEEEECCCC-------------------ceEEEeeccCCCcEeEEEEccCCcE
Q psy7061           3 AHRAYGLHCVFSPDCR-LLATTSADQTARIWNTEDF-------------------SLVRELGTANQRWVWDAAFTLDSKF   62 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~v~~~~~~~~~~~   62 (65)
                      +|...+..+.|+|+++ .+++++.++.+++|+++..                   ..+..+.. |...|.+++|+|++++
T Consensus       257 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~  335 (357)
T 3i2n_A          257 AHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL-STQPISSLDWSPDKRG  335 (357)
T ss_dssp             CCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC-CSSCEEEEEECSSSTT
T ss_pred             CCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecccc-CCCCeeEEEEcCCCCe
Confidence            6888999999999987 7999999999999998743                   24555666 8899999999999988


Q ss_pred             Ee
Q psy7061          63 LL   64 (65)
Q Consensus        63 i~   64 (65)
                      ++
T Consensus       336 l~  337 (357)
T 3i2n_A          336 LC  337 (357)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.33  E-value=1.8e-11  Score=60.35  Aligned_cols=60  Identities=13%  Similarity=0.161  Sum_probs=48.1

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccC----CCcEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTAN----QRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~i~s   65 (65)
                      .|...|..+.|+|+|..+++++.++.+++|+...  .+..+. ++    ...+.+++|||+|+++++
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAs  146 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVV  146 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEE
Confidence            3567799999999999999999999999999543  444443 22    236999999999999874

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.32  E-value=5.6e-12  Score=61.34  Aligned_cols=58  Identities=10%  Similarity=0.050  Sum_probs=51.8

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+..+.|+|+++.+++++.++.+++|+++.+..+..+.+ |...|.+++|+|+++.+++
T Consensus       357 ~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g-H~~~V~sva~Sp~g~~l~S  414 (524)
T 2j04_B          357 NLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS-RETTITAIGVSRLHPMVLA  414 (524)
T ss_dssp             SCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE-CSSCEEEEECCSSCCBCEE
T ss_pred             cccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec-CCCceEEEEeCCCCCeEEE
Confidence            367899999999999999999999999998887777888 8999999999999988764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.32  E-value=1.7e-11  Score=62.58  Aligned_cols=61  Identities=10%  Similarity=0.033  Sum_probs=50.5

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEE-----ee-ccCCCcEeEEEEc-----cCC---cEEe
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRE-----LG-TANQRWVWDAAFT-----LDS---KFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~v~~~~~~-----~~~---~~i~   64 (65)
                      .+|.+.|.+++|+|+| .+++++.|+.+++|+++....+..     +. + |...|.+++|+     ||+   +.++
T Consensus       572 ~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~g-h~~~V~sv~Fs~~~~~~Dg~~~~~l~  646 (902)
T 2oaj_A          572 HANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGA-QSACVTCIEFVIMEYGDDGYSSILMV  646 (902)
T ss_dssp             CCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSS-CCCCEEEEEEEEEECTTSSSEEEEEE
T ss_pred             EcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccc-cccceEEEEEEEEecCCCCCcceEEE
Confidence            4688999999999999 999999999999999987665432     21 4 78889999999     885   5665

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.30  E-value=1.7e-11  Score=57.75  Aligned_cols=61  Identities=11%  Similarity=0.179  Sum_probs=51.3

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEcc----CCcEEe
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL----DSKFLL   64 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~i~   64 (65)
                      |...|.++.|+|+++.+++++.++.+++|+++.+..+..+...+...+.+++|+|    ++.+++
T Consensus       213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~  277 (437)
T 3gre_A          213 RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV  277 (437)
T ss_dssp             GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEE
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEE
Confidence            7789999999999999999999999999999998888877522778899996654    565665

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.29  E-value=4.5e-11  Score=56.08  Aligned_cols=48  Identities=17%  Similarity=0.095  Sum_probs=39.5

Q ss_pred             CCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEe-EEEEccCCcEEeC
Q psy7061          17 CRLLATTSADQTARIWNTEDFSLVRELGTANQRWVW-DAAFTLDSKFLLT   65 (65)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~i~s   65 (65)
                      +..+++++.|+.+++||+.+++.+.++.+ |...+. .++|+|++++++|
T Consensus       295 g~~lASgS~DgTIkIWDl~tGk~l~tL~g-H~~~vvs~vafSPDG~~LaS  343 (356)
T 2w18_A          295 DHCAAAILTSGTIAIWDLLLGQCTALLPP-VSDQHWSFVKWSGTDSHLLA  343 (356)
T ss_dssp             TTEEEEEETTSCEEEEETTTCSEEEEECC-C--CCCCEEEECSSSSEEEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEecC-CCCCeEEEEEECCCCCEEEE
Confidence            44678889999999999999999999987 666554 6899999999874

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.28  E-value=1.2e-10  Score=55.22  Aligned_cols=60  Identities=18%  Similarity=0.111  Sum_probs=50.0

Q ss_pred             ccccceEEEEECCCCCEEEEecCCC---cEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQ---TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +|...+..+.|+|+++.++.++.++   .+++|++.+++.. .+.. +...+..++|+|+++.++
T Consensus       176 ~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~-~~~~~~~~~~spdg~~la  238 (415)
T 2hqs_A          176 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVAS-FPRHNGAPAFSPDGSKLA  238 (415)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEEC-CSSCEEEEEECTTSSEEE
T ss_pred             CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eeec-CCCcccCEEEcCCCCEEE
Confidence            4667899999999999998888764   8999999988765 4454 677899999999999775

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.28  E-value=6.4e-11  Score=56.07  Aligned_cols=59  Identities=22%  Similarity=0.348  Sum_probs=50.9

Q ss_pred             ccccceEEEEECCCCC-EEEEecCCCcEEEEECCC-CceEEEeeccCCCcEeEEEEccCCcE
Q psy7061           3 AHRAYGLHCVFSPDCR-LLATTSADQTARIWNTED-FSLVRELGTANQRWVWDAAFTLDSKF   62 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~   62 (65)
                      .|...+.++.|+|++. .+++++.++.+++|+++. ...+..+.. |...+.+++|+|++..
T Consensus       275 ~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~-h~~~v~~i~~sp~~~~  335 (430)
T 2xyi_A          275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNET  335 (430)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC-CSSCEEEEEECSSCTT
T ss_pred             cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec-CCCCEEEEEECCCCCC
Confidence            5778899999999886 688999999999999997 556677777 8899999999999864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.27  E-value=1.4e-10  Score=54.36  Aligned_cols=57  Identities=5%  Similarity=-0.077  Sum_probs=49.4

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           8 GLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +....|+++++.+++++.++.+++|++..+.....+.. |...|.+++|+|+++++++
T Consensus       100 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s  156 (420)
T 3vl1_A          100 TAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA-HVSEITKLKFFPSGEALIS  156 (420)
T ss_dssp             EEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS-SSSCEEEEEECTTSSEEEE
T ss_pred             eEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc-ccCccEEEEECCCCCEEEE
Confidence            44456889999999999999999999998888777667 8999999999999998864

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.27  E-value=2.6e-11  Score=56.89  Aligned_cols=60  Identities=17%  Similarity=0.176  Sum_probs=44.1

Q ss_pred             ccceEEEEECC---CCCEEEEecCCCcEEEEECCCCceEEEeeccC--CCcEeEEEEccCCcEEe
Q psy7061           5 RAYGLHCVFSP---DCRLLATTSADQTARIWNTEDFSLVRELGTAN--QRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         5 ~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~i~   64 (65)
                      ...+..+.|++   ++..+++++.|+.+++|++.+++.+.++..++  ...+.+++|+|++..++
T Consensus       178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lv  242 (356)
T 2w18_A          178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFI  242 (356)
T ss_dssp             CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEE
T ss_pred             CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEE
Confidence            33344444444   34668889999999999999999999987622  24677789999998764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.26  E-value=1.5e-10  Score=54.89  Aligned_cols=56  Identities=20%  Similarity=0.237  Sum_probs=51.3

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEcc
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL   58 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   58 (65)
                      .+|...+.++.|+|+++.+++++.++.+++|++++++.+..+.. |...+.+++|++
T Consensus       307 ~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~  362 (464)
T 3v7d_B          307 SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG-HTALVGLLRLSD  362 (464)
T ss_dssp             CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECS
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-CCCcEEEEEEcC
Confidence            46788899999999999999999999999999999999988888 899999999974

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.26  E-value=1.6e-10  Score=54.73  Aligned_cols=59  Identities=20%  Similarity=0.236  Sum_probs=50.5

Q ss_pred             ccccceEEEEECC-CCCEEEEecCCCcEEEEECCCC---ceEEEeeccCCCcEeEEEEccCCcE
Q psy7061           3 AHRAYGLHCVFSP-DCRLLATTSADQTARIWNTEDF---SLVRELGTANQRWVWDAAFTLDSKF   62 (65)
Q Consensus         3 ~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~   62 (65)
                      +|...|.++.|+| ++..+++++.++.+++|+++..   ..+..+.. |...+.+++|+|++..
T Consensus       229 ~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~  291 (430)
T 2xyi_A          229 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA-HTAEVNCLSFNPYSEF  291 (430)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC-CSSCEEEEEECSSCTT
T ss_pred             CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec-CCCCeEEEEeCCCCCC
Confidence            5778899999999 6688999999999999999976   45666666 8899999999999874

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.26  E-value=3e-10  Score=51.41  Aligned_cols=55  Identities=11%  Similarity=0.253  Sum_probs=47.6

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEc
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFT   57 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   57 (65)
                      .+|...|.++.|+|+++.+++++.|+.+++|++.+++.+..+.. |...+.++.+.
T Consensus        64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~-h~~~~~~~~~~  118 (318)
T 4ggc_A           64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS-HSARVGSLSWN  118 (318)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEE
T ss_pred             cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecC-ccceEEEeecC
Confidence            35777899999999999999999999999999999999888888 77777766543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.23  E-value=5e-11  Score=54.62  Aligned_cols=62  Identities=18%  Similarity=0.117  Sum_probs=51.6

Q ss_pred             ccccceEEEEECCC---CCEEEEecCCCcEEEEECCCCc-eEEEeeccCCCcEeEEE------EccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPD---CRLLATTSADQTARIWNTEDFS-LVRELGTANQRWVWDAA------FTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~------~~~~~~~i~s   65 (65)
                      +|...|.++.|+|+   +..+++++.++.+++|++..+. .+..+.. |...+.+++      |+|+++.+++
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~s~~~~~l~~  134 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKG-HKEIINAIDGIGGLGIGEGAPEIVT  134 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECC-CSSCEEEEEEESGGGCC-CCCEEEE
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEe-cccceEEEeeccccccCCCccEEEE
Confidence            46778999999998   6899999999999999999877 7777777 899999995      4678887763

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.21  E-value=1.9e-10  Score=56.13  Aligned_cols=62  Identities=6%  Similarity=-0.054  Sum_probs=49.3

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCc-eEEEeeccCCCcEeEE--EEccCC-cEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFS-LVRELGTANQRWVWDA--AFTLDS-KFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~--~~~~~~-~~i~s   65 (65)
                      .+|...+.+++|+++ ..+++++.|+.+++|++.++. ....+.. |...|.++  +|+|++ .+++|
T Consensus       263 ~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~-H~~~V~sv~~~~s~~g~~~laS  328 (524)
T 2j04_B          263 SLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQV-HDSYILSVSTAYSDFEDTVVST  328 (524)
T ss_dssp             CCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEEC-SSSCEEEEEEECCTTSCCEEEE
T ss_pred             EcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeec-ccccEEEEEEEcCCCCCeEEEE
Confidence            357788999999985 479999999999999998653 3445666 88999999  578887 66664

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.19  E-value=6.5e-10  Score=52.19  Aligned_cols=54  Identities=17%  Similarity=0.206  Sum_probs=49.3

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEcc
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL   58 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   58 (65)
                      |...|.++.|+|++..+++++.++.+++|++.+++.+..+.. |...+.+++|++
T Consensus       133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~  186 (401)
T 4aez_A          133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG-HQARVGCLSWNR  186 (401)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEEET
T ss_pred             CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecC-CCCceEEEEECC
Confidence            677899999999999999999999999999999998888887 899999999954

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.17  E-value=5.5e-10  Score=57.66  Aligned_cols=61  Identities=7%  Similarity=-0.024  Sum_probs=52.9

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +|...+..+.|+|+++.++.++.++.+++|++.+++....... +...+..++|+|++++++
T Consensus       376 ~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~-~~~~v~~~~~SpDG~~la  436 (1045)
T 1k32_A          376 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS-REAMITDFTISDNSRFIA  436 (1045)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSSCCCCEEECTTSCEEE
T ss_pred             CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC-CCCCccceEECCCCCeEE
Confidence            3556788999999999999999999999999998887766656 778889999999999876

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.15  E-value=2.9e-10  Score=53.44  Aligned_cols=48  Identities=13%  Similarity=-0.069  Sum_probs=41.4

Q ss_pred             CCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061          17 CRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +.++++++.++.+++|+..++.....+.. +...|.+++|+|+|++|++
T Consensus       329 ~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~-~~~~V~svafspdG~~LA~  376 (393)
T 4gq1_A          329 DYFATAHSQHGLIQLINTYEKDSNSIPIQ-LGMPIVDFCWHQDGSHLAI  376 (393)
T ss_dssp             TEEEEEETTTTEEEEEETTCTTCCEEEEE-CSSCEEEEEECTTSSEEEE
T ss_pred             CEEEEEECCCCEEEEEECCCCcEEEEecC-CCCcEEEEEEcCCCCEEEE
Confidence            34667888999999999998888777777 7889999999999999874

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.13  E-value=1e-09  Score=51.69  Aligned_cols=61  Identities=3%  Similarity=0.106  Sum_probs=53.9

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +|.+.+..+.|++++..+++++.++.+++|++++++.+..+.. +...+.+++|+|+++.++
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~  227 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDL-TGKWSKILLYDPIRDLVY  227 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEEC-SSSSEEEEEEETTTTEEE
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcC-CCCCeeEEEEcCCCCEEE
Confidence            4667889999999999999999999999999998888888877 788999999999998774

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.10  E-value=2.6e-09  Score=50.70  Aligned_cols=60  Identities=18%  Similarity=0.126  Sum_probs=46.6

Q ss_pred             ccccceEEEEECCCCCEEE-EecCCC--cEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           3 AHRAYGLHCVFSPDCRLLA-TTSADQ--TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+...+..+.|+|+++.++ +++.++  .+++|++.++.. ..+.. +...+..++|+|+++.++
T Consensus       220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~-~~~~~~~~~~spdg~~l~  282 (415)
T 2hqs_A          220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTD-GRSNNTEPTWFPDSQNLA  282 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCC-CSSCEEEEEECTTSSEEE
T ss_pred             cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcC-CCCcccceEECCCCCEEE
Confidence            3556788999999999776 555554  489999987765 35555 678899999999999775

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.10  E-value=1.8e-09  Score=51.66  Aligned_cols=61  Identities=13%  Similarity=0.106  Sum_probs=47.7

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeecc------CCCcEeEEEEccCCcEEe
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTA------NQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~i~   64 (65)
                      +|...+.+++|+|+++.+++++.++.+++|+.+ +.....+..+      |...+.+++|++++.+++
T Consensus       190 ~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~  256 (434)
T 2oit_A          190 PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAI  256 (434)
T ss_dssp             CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred             CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEE
Confidence            366789999999999999999999999999998 4444444320      223789999999887763

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.10  E-value=2.3e-09  Score=50.88  Aligned_cols=59  Identities=19%  Similarity=0.281  Sum_probs=50.2

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEee----ccCCCcEeEEEEccCCcEEe
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELG----TANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~i~   64 (65)
                      |...|.++.|+  ++.+++++.++.+++|++.+++.+..+.    ..+...+.+++|+|++..++
T Consensus       361 ~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la  423 (445)
T 2ovr_B          361 HQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCA  423 (445)
T ss_dssp             CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEE
T ss_pred             CCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEE
Confidence            77789999995  5789999999999999999998887772    12778999999999988875

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.09  E-value=3.8e-10  Score=50.40  Aligned_cols=61  Identities=13%  Similarity=-0.060  Sum_probs=48.6

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCC-CceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTED-FSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .|...+..+.|+|+++.++++. ++.+++|++.+ ++.......++...+.+++|+|+++.++
T Consensus        39 ~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  100 (297)
T 2ojh_A           39 QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYA  100 (297)
T ss_dssp             EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEE
T ss_pred             cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEE
Confidence            3556788999999999888776 77999999998 7766555442347788999999999876

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.02  E-value=1.3e-08  Score=47.39  Aligned_cols=57  Identities=16%  Similarity=0.172  Sum_probs=47.8

Q ss_pred             cceEEEEECCCCCEE-EEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLL-ATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+.++.|+|+++.+ ++++.++.+++|++.+++.+..+..  ...+.+++|+|+++.++
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~--~~~v~~~~~spdg~~l~   89 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA--GSSPQGVAVSPDGKQVY   89 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC--CCCccceEECCCCCEEE
Confidence            457899999999876 6777899999999999888877775  34899999999998764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.02  E-value=7e-09  Score=48.28  Aligned_cols=34  Identities=24%  Similarity=0.160  Sum_probs=31.6

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCCC
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDF   37 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   37 (65)
                      |...|.++.|+|+++.+++++.++.+++|++...
T Consensus       239 h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          239 DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             CCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            8889999999999999999999999999998754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.01  E-value=6.9e-09  Score=49.22  Aligned_cols=55  Identities=24%  Similarity=0.335  Sum_probs=46.7

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD   59 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   59 (65)
                      .+|...|.++.|  +++.+++++.++.+++|++.+++.+..+.. |...+.+++|+++
T Consensus       170 ~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~  224 (435)
T 1p22_A          170 TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIH-HCEAVLHLRFNNG  224 (435)
T ss_dssp             CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECC-CCSCEEEEECCTT
T ss_pred             cCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcC-CCCcEEEEEEcCC
Confidence            467888888888  678899999999999999998888888887 8888999988753

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.93  E-value=7.3e-09  Score=51.70  Aligned_cols=58  Identities=12%  Similarity=0.057  Sum_probs=46.5

Q ss_pred             cceEEEEECCCCCEEEEecC-CC-----cEEEEECCCCceEEEeeccCC------------------------CcEeEEE
Q psy7061           6 AYGLHCVFSPDCRLLATTSA-DQ-----TARIWNTEDFSLVRELGTANQ------------------------RWVWDAA   55 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~------------------------~~v~~~~   55 (65)
                      ..+..+.|+|+|+.+++++. ++     .+++|++.+++....... +.                        ..+..++
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDS-KVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECG-GGTC--------------------CCEESCCCE
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccch-hhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            35889999999999988887 77     899999998877655543 22                        2378999


Q ss_pred             EccCCcEEe
Q psy7061          56 FTLDSKFLL   64 (65)
Q Consensus        56 ~~~~~~~i~   64 (65)
                      |+|++++++
T Consensus       116 ~SpDg~~l~  124 (741)
T 2ecf_A          116 WSPDAQRLL  124 (741)
T ss_dssp             ECTTSSEEE
T ss_pred             ECCCCCEEE
Confidence            999999876

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.93  E-value=7.8e-09  Score=49.08  Aligned_cols=55  Identities=16%  Similarity=0.228  Sum_probs=44.8

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEcc
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL   58 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   58 (65)
                      .+|.+.+.. .+.++++.+++++.++.+++|++.+++.+..+.. |...|.+++|++
T Consensus       115 ~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~  169 (445)
T 2ovr_B          115 KGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQMRD  169 (445)
T ss_dssp             ECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCC-CSSCEEEEEEET
T ss_pred             cccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcC-CCCCEEEEEecC
Confidence            457766433 2444688999999999999999999999888888 899999999874

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.93  E-value=2.9e-08  Score=47.15  Aligned_cols=56  Identities=16%  Similarity=0.249  Sum_probs=47.0

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      |...|.++.+  +++.+++++.++.+++|++.+++....+.. |...|.+++|  ++..++
T Consensus       132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~  187 (435)
T 1p22_A          132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGSVLCLQY--DERVII  187 (435)
T ss_dssp             SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECC-CSSCEEEEEC--CSSEEE
T ss_pred             CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcC-CCCcEEEEEE--CCCEEE
Confidence            4456777776  688999999999999999999998888888 8999999988  555654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.93  E-value=2e-08  Score=44.87  Aligned_cols=61  Identities=18%  Similarity=0.169  Sum_probs=46.7

Q ss_pred             ccccceEEEEECCCCCEEEEec-CCCcEEEEECC-CCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTS-ADQTARIWNTE-DFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+...+..+.|+|+++.++.++ .++.+.+|.++ .......+.. +...+..++|+|++++++
T Consensus       170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~  232 (297)
T 2ojh_A          170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD-SAYGDWFPHPSPSGDKVV  232 (297)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC-CSEEEEEEEECTTSSEEE
T ss_pred             cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec-CCcccCCeEECCCCCEEE
Confidence            3556788999999998776555 57888888876 4555556665 677889999999999875

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.91  E-value=2.5e-09  Score=52.25  Aligned_cols=60  Identities=12%  Similarity=0.066  Sum_probs=47.1

Q ss_pred             ccccceEEEEECCCCCEEEEecCCC--cEEEEECCCCceEEEeeccCCCcEeEEE--------EccCCcEEe
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQ--TARIWNTEDFSLVRELGTANQRWVWDAA--------FTLDSKFLL   64 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~i~   64 (65)
                      ++.+.+..+.|+|+|+.++++..++  .+++|++.+++.. .+.. +...+..++        |+|++..++
T Consensus       192 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~spdg~~~~  261 (582)
T 3o4h_A          192 SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL-PSKDFSSYRPTAITWLGYLPDGRLAV  261 (582)
T ss_dssp             CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC-SCSHHHHHCCSEEEEEEECTTSCEEE
T ss_pred             cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC-CCcChhhhhhccccceeEcCCCcEEE
Confidence            4666788999999999998777777  7999999887776 5555 666666666        999996654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.88  E-value=4.2e-08  Score=46.28  Aligned_cols=60  Identities=10%  Similarity=0.083  Sum_probs=48.5

Q ss_pred             ccccceEEEEECCCCCEE-EEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           3 AHRAYGLHCVFSPDCRLL-ATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .|...+..+.|+|+++.+ +++..++.+++|++++++.+..+..  ...+..++|+|+++.++
T Consensus       209 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~  269 (433)
T 3bws_A          209 LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK--IGLPRGLLLSKDGKELY  269 (433)
T ss_dssp             CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC--CSEEEEEEECTTSSEEE
T ss_pred             CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC--CCCceEEEEcCCCCEEE
Confidence            356678899999998876 5555789999999998887766664  45689999999998775

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.87  E-value=2.8e-08  Score=49.71  Aligned_cols=60  Identities=5%  Similarity=0.005  Sum_probs=45.1

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCc----------------EeEEEEccCCcEEe
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRW----------------VWDAAFTLDSKFLL   64 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------v~~~~~~~~~~~i~   64 (65)
                      .+...+..+.|+|+|+.++.++. +.+++|++.++........ +...                +..++|+|+++.|+
T Consensus       149 ~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~-~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~  224 (741)
T 2ecf_A          149 HGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTAD-GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIA  224 (741)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCC-CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEE
T ss_pred             cCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccC-CccceeccccceeeeeccccccceEECCCCCEEE
Confidence            35567889999999998887764 5899999988766544443 2222                47799999999876

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.84  E-value=2.5e-07  Score=43.21  Aligned_cols=56  Identities=25%  Similarity=0.246  Sum_probs=46.7

Q ss_pred             cceEEEEECCCCCEE-EEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061           6 AYGLHCVFSPDCRLL-ATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      ..+..+.|+|+++.+ +++..++.+++|++.+++.+..+..  ...+..++|+|+++.+
T Consensus       116 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~~l  172 (391)
T 1l0q_A          116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV--GRSPKGIAVTPDGTKV  172 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--CSSEEEEEECTTSSEE
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec--CCCcceEEECCCCCEE
Confidence            457889999999876 7788899999999998888777765  3567999999999876

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.83  E-value=4.3e-08  Score=50.94  Aligned_cols=60  Identities=20%  Similarity=0.211  Sum_probs=47.8

Q ss_pred             ccccceEEEEECCCCCEEEEecCCC----------cEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQ----------TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +|.+.+..+.|+|++++++.++.+.          .+++|++.+++ ...+.. +...+..++|+|+++.++
T Consensus       418 ~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~-~~~~~~~~~~spdG~~l~  487 (1045)
T 1k32_A          418 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATT-ENSHDYAPAFDADSKNLY  487 (1045)
T ss_dssp             CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSC-SSSBEEEEEECTTSCEEE
T ss_pred             CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeC-CCcccCCceEcCCCCEEE
Confidence            4556678899999999887776543          89999998776 555655 677888999999999875

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.80  E-value=1.2e-08  Score=50.74  Aligned_cols=56  Identities=11%  Similarity=-0.041  Sum_probs=43.0

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCc------------------EeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRW------------------VWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------v~~~~~~~~~~~i~   64 (65)
                      .+..+.|+|+|+.++.++. +.+++|++.++........ +...                  +..++|+|+++.|+
T Consensus       115 ~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~-~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la  188 (723)
T 1xfd_A          115 KLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST-GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA  188 (723)
T ss_dssp             CCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC-CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE
T ss_pred             cccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecC-CCCCceECcccceeEEEEeccCcceEEECCCCCEEE
Confidence            4677899999998888775 7899999988776655443 2322                  37899999999886

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.77  E-value=2.6e-07  Score=45.52  Aligned_cols=55  Identities=11%  Similarity=0.077  Sum_probs=47.0

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEEC--CCCceEEEeeccCCCcEeEEEEcc----CCcEEe
Q psy7061           8 GLHCVFSPDCRLLATTSADQTARIWNT--EDFSLVRELGTANQRWVWDAAFTL----DSKFLL   64 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~----~~~~i~   64 (65)
                      +..+.|+|+++.+.+++.++.+.+|++  .+++.+..+..  ......++|+|    ++++++
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~--g~~p~~va~sp~~~~dg~~l~  241 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI--GIEARSVESSKFKGYEDRYTI  241 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC--CSEEEEEEECCSTTCTTTEEE
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec--CCCcceEEeCCCcCCCCCEEE
Confidence            667889999999999999999999999  77777777663  56789999999    999875

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.76  E-value=2.9e-08  Score=48.64  Aligned_cols=54  Identities=13%  Similarity=-0.070  Sum_probs=43.6

Q ss_pred             EEEEECCCCCEEEEecCC----CcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           9 LHCVFSPDCRLLATTSAD----QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+.|+|+|+.++.++.+    ..+++|++.+++.. .+.. +...+..++|+|+|+.|+
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~-~~~~~~~~~~SpDG~~l~  210 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDS-GEGSFSSASISPGMKVTA  210 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECC-SSCEEEEEEECTTSCEEE
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eeec-CCCccccceECCCCCEEE
Confidence            567899999998876665    67999998877755 4555 678889999999999886

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.73  E-value=1.8e-07  Score=47.25  Aligned_cols=61  Identities=13%  Similarity=0.042  Sum_probs=43.5

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcE-----------------eEEEEccCCcEEe
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWV-----------------WDAAFTLDSKFLL   64 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~i~   64 (65)
                      .+.+.+....|+|+|+.++.+. ++.+++|+..++.........+...+                 ..+.|||||+.|+
T Consensus       109 ~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la  186 (740)
T 4a5s_A          109 RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLA  186 (740)
T ss_dssp             CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEE
T ss_pred             cCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEE
Confidence            4556788999999999888774 67899999987765443222122222                 3488999999886

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.72  E-value=9.5e-08  Score=47.67  Aligned_cols=57  Identities=16%  Similarity=0.159  Sum_probs=43.7

Q ss_pred             eEEEEECCCCCEEEEec---------------------------------CCCcEEEEECCCCceEEEeec-cCCCcEeE
Q psy7061           8 GLHCVFSPDCRLLATTS---------------------------------ADQTARIWNTEDFSLVRELGT-ANQRWVWD   53 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~   53 (65)
                      +..+.|+|+++.++.++                                 .+..+++|++.++........ .+...+..
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  262 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN  262 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence            57889999999888776                                 345789999988775444322 25677899


Q ss_pred             EEEccCCcEEe
Q psy7061          54 AAFTLDSKFLL   64 (65)
Q Consensus        54 ~~~~~~~~~i~   64 (65)
                      ++|+|+++.++
T Consensus       263 ~~~spdg~~l~  273 (706)
T 2z3z_A          263 LSWSPDENILY  273 (706)
T ss_dssp             EEECTTSSEEE
T ss_pred             EEEECCCCEEE
Confidence            99999999775

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.70  E-value=4.2e-07  Score=41.97  Aligned_cols=57  Identities=14%  Similarity=0.211  Sum_probs=42.0

Q ss_pred             ceEEEEECCCCCEE-EEecCCCcEEEEECCCC---ceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLL-ATTSADQTARIWNTEDF---SLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+..+.|+|+++.+ ++...++.+.+|+++..   ..+..+.. +...+..++|+|++++++
T Consensus       241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~spdg~~l~  301 (347)
T 3hfq_A          241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST-EGDFPRDFDLDPTEAFVV  301 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC-SSSCCCEEEECTTSSEEE
T ss_pred             cceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec-CCCCcCeEEECCCCCEEE
Confidence            46678999999876 55666889999998732   33334444 456678999999998765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.69  E-value=1.7e-08  Score=50.24  Aligned_cols=58  Identities=10%  Similarity=-0.062  Sum_probs=43.5

Q ss_pred             ccceEEEEECCCCCEEEEecCCCcEEEEECCC-----CceEEEeeccCCCc--------------EeEEEEccCCcEEe
Q psy7061           5 RAYGLHCVFSPDCRLLATTSADQTARIWNTED-----FSLVRELGTANQRW--------------VWDAAFTLDSKFLL   64 (65)
Q Consensus         5 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--------------v~~~~~~~~~~~i~   64 (65)
                      ...+..+.|+|+++.++.. .++.+++|++.+     +........ +...              +..++|+|++++|+
T Consensus       120 ~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~-~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la  196 (706)
T 2z3z_A          120 NEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTID-GTETLVYGQAVHQREFGIEKGTFWSPKGSCLA  196 (706)
T ss_dssp             TTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSC-CBTTEEESSCCGGGCTTCCCSEEECTTSSEEE
T ss_pred             cccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccC-CCCCeEcccchhhhhcCCCceEEECCCCCEEE
Confidence            3456778999999988875 578999999987     665544433 2222              47899999999886

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.68  E-value=9.3e-08  Score=47.82  Aligned_cols=58  Identities=12%  Similarity=0.005  Sum_probs=42.3

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcE-----------------eEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWV-----------------WDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~i~   64 (65)
                      ..+..+.|+|+|+.++.+. ++.+++|++.++.........+...+                 ..++|+|+|+.|+
T Consensus       110 ~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la  184 (719)
T 1z68_A          110 RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLA  184 (719)
T ss_dssp             SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEE
T ss_pred             cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEE
Confidence            3467799999999888775 67999999987766543322122222                 4899999999886

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.67  E-value=9.1e-08  Score=44.60  Aligned_cols=53  Identities=13%  Similarity=0.067  Sum_probs=39.4

Q ss_pred             EEECCCCCEEEEecC-CC--cEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          11 CVFSPDCRLLATTSA-DQ--TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        11 ~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..|+|+++.++..+. ++  .+.+|++.+++....... +...+...+|+|+++.|+
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~-~~~~~~~~~~spdg~~l~   96 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG-RGDNTFGGFLSPDDDALF   96 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS-SCBCSSSCEECTTSSEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC-CCCCccceEEcCCCCEEE
Confidence            679999998877776 55  488888887776655544 445555678999998875

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.66  E-value=3e-07  Score=45.65  Aligned_cols=59  Identities=17%  Similarity=0.130  Sum_probs=42.6

Q ss_pred             ccceEEEEECCCCCEEEEecCC--------CcEEEEECC-CC---ceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           5 RAYGLHCVFSPDCRLLATTSAD--------QTARIWNTE-DF---SLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         5 ~~~v~~~~~~~~~~~~~~~~~~--------~~~~~~~~~-~~---~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ...+..+.|+|+|+.++..+.+        ..+++|++. ++   ........ +...+..++|+|+++.++
T Consensus       187 ~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~-~~~~~~~~~~spdg~l~~  257 (662)
T 3azo_A          187 HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG-PEEAIAQAEWAPDGSLIV  257 (662)
T ss_dssp             SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE-TTBCEEEEEECTTSCEEE
T ss_pred             CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC-CCceEcceEECCCCeEEE
Confidence            3456678899999988766643        368999998 46   33333333 567899999999998554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.65  E-value=7.7e-07  Score=40.61  Aligned_cols=54  Identities=6%  Similarity=0.072  Sum_probs=43.5

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+..+.|+|+++.++.+  ++.+.+|++.+++.+..+..  ...+..++|+|+++.++
T Consensus       242 ~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~  295 (337)
T 1pby_B          242 FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVW  295 (337)
T ss_dssp             CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEE
T ss_pred             ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEE
Confidence            45678999999988776  68999999998887766664  35678999999998765

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.62  E-value=2.5e-07  Score=46.26  Aligned_cols=56  Identities=13%  Similarity=0.157  Sum_probs=41.4

Q ss_pred             EEEEECCCCCEEEEecCCC----------------------------------cEEEEECCCCceEEEeecc-----CCC
Q psy7061           9 LHCVFSPDCRLLATTSADQ----------------------------------TARIWNTEDFSLVRELGTA-----NQR   49 (65)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~-----~~~   49 (65)
                      ..+.|+|+|+.++.++.+.                                  .+++|++.++.....+..+     +..
T Consensus       176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~  255 (723)
T 1xfd_A          176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY  255 (723)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred             ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence            6799999999887776432                                  6888998877654444431     256


Q ss_pred             cEeEEEEccCCcEEe
Q psy7061          50 WVWDAAFTLDSKFLL   64 (65)
Q Consensus        50 ~v~~~~~~~~~~~i~   64 (65)
                      .+..++|+|+++.++
T Consensus       256 ~~~~~~~SpDg~~l~  270 (723)
T 1xfd_A          256 YITMVKWATSTKVAV  270 (723)
T ss_dssp             EEEEEEESSSSEEEE
T ss_pred             eeEEEEEeCCCeEEE
Confidence            788999999998774

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.62  E-value=1.2e-07  Score=46.99  Aligned_cols=59  Identities=14%  Similarity=0.107  Sum_probs=45.3

Q ss_pred             cccceEEEEECCCCCEEEEecCC----------CcEEEEECCC------CceEEEee-ccCCCcEeEEEEccCCcEEe
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSAD----------QTARIWNTED------FSLVRELG-TANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~------~~~~~~~~-~~~~~~v~~~~~~~~~~~i~   64 (65)
                      |...+..+.|+|+++.++..+.+          ..+++|++..      +.. ..+. . +...+..++|+|+|++|+
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~-~~~~~~~~~~SpDG~~la  203 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDD-AHRFVTGPRLSPDGRQAV  203 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCS-CSSEECCCEECTTSSEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEec-CCCcccCceECCCCCEEE
Confidence            45567889999999988877765          4788999887      444 3444 4 557788899999999886

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.62  E-value=2.7e-07  Score=46.42  Aligned_cols=57  Identities=16%  Similarity=0.054  Sum_probs=41.7

Q ss_pred             cceEEEEECCCCCEEEEecCCC-----cEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQ-----TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+..+.|+|+++.++.+..++     .+++|++.+++.......  ...+..++|+|+++.|+
T Consensus       125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~--~~~~~~~~wspDg~~l~  186 (710)
T 2xdw_A          125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTHDGKGMF  186 (710)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECTTSSEEE
T ss_pred             EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc--CcccceEEEEeCCCEEE
Confidence            3577889999999876554322     799999998877654332  22367799999998875

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.60  E-value=7.7e-07  Score=40.69  Aligned_cols=58  Identities=17%  Similarity=0.095  Sum_probs=42.4

Q ss_pred             ccceEEEEECCCCCEEEEecCC-CcEEEEECC--CCce--EEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           5 RAYGLHCVFSPDCRLLATTSAD-QTARIWNTE--DFSL--VRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         5 ~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~--~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ...+..+.|+|+++.++++..+ +.+.+|+++  ++..  +..+..  ...+..++|+|+++.++
T Consensus        37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~   99 (343)
T 1ri6_A           37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL--PGSLTHISTDHQGQFVF   99 (343)
T ss_dssp             SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC--SSCCSEEEECTTSSEEE
T ss_pred             CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc--CCCCcEEEEcCCCCEEE
Confidence            3456788999999977777765 899999987  4442  333333  33788999999998764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.58  E-value=1e-06  Score=40.61  Aligned_cols=55  Identities=22%  Similarity=0.230  Sum_probs=39.5

Q ss_pred             ceEEEEECCCCCEEEEecCC---C--cEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSAD---Q--TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+..+.|+|+|+.++..+.+   +  .++++++..++.......  .. +..++|+|+++.|+
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~~-~~~~~wspdg~~l~  119 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA--KN-IRSLEWNEDSRKLL  119 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE--SE-EEEEEECTTSSEEE
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC--CC-ccceeECCCCCEEE
Confidence            35668999999987766543   2  377778877666544443  33 89999999998775

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.58  E-value=1.8e-06  Score=39.57  Aligned_cols=56  Identities=14%  Similarity=0.195  Sum_probs=43.5

Q ss_pred             ceEEEEECCCCCEE-EEecCCCcEEEEECCCCce---EEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLL-ATTSADQTARIWNTEDFSL---VRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+..+.|+|+++.+ ++...++.+.+|++.+++.   +..+..  ...+..++|+|++++++
T Consensus       177 ~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~  236 (331)
T 3u4y_A          177 RPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT--NNLPGTIVVSRDGSTVY  236 (331)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC--SSCCCCEEECTTSSEEE
T ss_pred             CccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC--CCCCceEEECCCCCEEE
Confidence            46788999999854 5555688999999988776   656554  46678899999999654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.57  E-value=2.8e-06  Score=39.08  Aligned_cols=58  Identities=10%  Similarity=0.003  Sum_probs=45.1

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+..+.|+++++.+++...++.+.+|+..++........ +...+..++++|+++.++
T Consensus        45 ~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~i~~~~dg~l~v  102 (333)
T 2dg1_A           45 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS-HKANPAAIKIHKDGRLFV  102 (333)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC-SSSSEEEEEECTTSCEEE
T ss_pred             ccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC-CCCCcceEEECCCCcEEE
Confidence            4567889999999777778888999999887765544434 567799999999998765

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.53  E-value=2.3e-06  Score=39.22  Aligned_cols=54  Identities=22%  Similarity=0.185  Sum_probs=40.4

Q ss_pred             EEEECCCCCEEEEe-cCCCcEEEEECCCCce-EEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          10 HCVFSPDCRLLATT-SADQTARIWNTEDFSL-VRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        10 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+.|+|+++.++.+ ..++.+.+|+..++.. ...... +......++|+|++++++
T Consensus        44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~   99 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE-GQSSMADVDITPDDQFAV   99 (331)
T ss_dssp             EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE-CSSCCCCEEECTTSSEEE
T ss_pred             eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc-CCCCccceEECCCCCEEE
Confidence            88999999865444 4488999999988876 555554 445444499999998775

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.53  E-value=1.9e-07  Score=46.86  Aligned_cols=59  Identities=12%  Similarity=-0.034  Sum_probs=40.7

Q ss_pred             cccceEEEEECCCCCEEE-----EecCCCcEEEEECCCCceE-EEeeccCCCcEeEEEEccCCcEEe
Q psy7061           4 HRAYGLHCVFSPDCRLLA-----TTSADQTARIWNTEDFSLV-RELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      |...+..+.|+|+|+.++     .++.+..+++|++.+++.+ .....  ......++|+|+++.++
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~~~~~~~~wspDg~~l~  183 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE--GGKYATPKWTPDSKGFY  183 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS--CCTTCCCEECTTSSEEE
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC--cccccceEEecCCCEEE
Confidence            444678899999999877     3333468999999987754 11111  11126899999998775

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.50  E-value=4.7e-06  Score=38.76  Aligned_cols=56  Identities=18%  Similarity=0.139  Sum_probs=39.4

Q ss_pred             ceEEEEECCCCCEEEEecC--CCcEEEEECC--CCc--eEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSA--DQTARIWNTE--DFS--LVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~--~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ....+.|+|+++++..+..  ++.+.+|+++  ++.  .+....  ....+..++|+|++++++
T Consensus       260 ~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~g~~~~~~~~spdg~~l~  321 (361)
T 3scy_A          260 GSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--TGIHPRNFIITPNGKYLL  321 (361)
T ss_dssp             CEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--CSSCCCEEEECTTSCEEE
T ss_pred             CcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--CCCCCceEEECCCCCEEE
Confidence            3568899999998755554  4789999986  333  222222  245678899999999775

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.50  E-value=8.2e-07  Score=40.52  Aligned_cols=56  Identities=20%  Similarity=0.232  Sum_probs=43.4

Q ss_pred             ceEEEEECCCCCEEEEec------------CCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTS------------ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+..+.|+|+++.++.+.            .++.+.+|++.+++....+..  ...+..++|+|++++++
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~  150 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--PRQITMLAWARDGSKLY  150 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--CSSCCCEEECTTSSCEE
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC--CCCcceeEECCCCCEEE
Confidence            456788999998777665            568999999988877766653  45577889999998664

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.50  E-value=2.7e-06  Score=38.92  Aligned_cols=56  Identities=14%  Similarity=0.163  Sum_probs=40.0

Q ss_pred             ceEEEEECCCCCEEE-EecCCCcEEEEECCC----CceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLA-TTSADQTARIWNTED----FSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+..+.|+|+++.++ +...++.+.+|++..    ...+..+.. + ..+..++|+|++++++
T Consensus       232 ~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~-~~~~~~~~s~dg~~l~  292 (343)
T 1ri6_A          232 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT-E-TQPRGFNVDHSGKYLI  292 (343)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC-S-SSCCCEEECTTSSEEE
T ss_pred             CccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC-C-CccceEEECCCCCEEE
Confidence            455789999998665 555789999999982    233333443 3 3388999999998765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.50  E-value=2.6e-06  Score=39.09  Aligned_cols=54  Identities=13%  Similarity=0.098  Sum_probs=42.8

Q ss_pred             ceEEEEECC-CCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSP-DCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+..+.++| +++.++.+  ++.+.+|++.+++.+..+..  ...+..++|+|+++.++
T Consensus       256 ~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~  310 (349)
T 1jmx_B          256 LYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLY  310 (349)
T ss_dssp             CEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEE
T ss_pred             cceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC--CCCccceEECCCCCEEE
Confidence            456778899 99887776  78999999998887766654  34577899999988765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.49  E-value=3.8e-06  Score=39.06  Aligned_cols=58  Identities=19%  Similarity=0.221  Sum_probs=40.8

Q ss_pred             ceEEEEECCCCCEEEEec-CCCcEEEEECCCCce--EEEeec--cCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTS-ADQTARIWNTEDFSL--VRELGT--ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~--~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+..+.|+|+++.++... .++.+.+|++.++..  +.....  .+......++|+|++++++
T Consensus       212 ~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~  274 (361)
T 3scy_A          212 GPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLY  274 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEE
T ss_pred             CCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEE
Confidence            466789999998765555 688999999886543  222221  1235568999999999874

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.46  E-value=2.9e-06  Score=39.94  Aligned_cols=52  Identities=12%  Similarity=0.163  Sum_probs=43.7

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCC--ceEEEeeccCCCcEeEEEEccCCc
Q psy7061           8 GLHCVFSPDCRLLATTSADQTARIWNTEDF--SLVRELGTANQRWVWDAAFTLDSK   61 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~   61 (65)
                      +..+.|+|+++.+.+++. +.+.+|+..++  +.+..+.. .......++++|+|.
T Consensus       307 p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~-~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          307 ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEG-AAEASLQVQFHPVGG  360 (361)
T ss_dssp             CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETT-SCSSEEEEEECCCSC
T ss_pred             eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEecc-CCCCcEEEEecCCCC
Confidence            667899999998877776 99999999999  88877655 567778899999986

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.46  E-value=4.6e-07  Score=45.41  Aligned_cols=54  Identities=17%  Similarity=0.148  Sum_probs=41.6

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCC---cEeEEEEccCCcEEe
Q psy7061           9 LHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQR---WVWDAAFTLDSKFLL   64 (65)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~i~   64 (65)
                      ..+.|+|+++.+. .+.++.+++|++.++.....+.. +..   .+..++|+|+|++|+
T Consensus        19 ~~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~SpDg~~la   75 (719)
T 1z68_A           19 FFPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSN-RTMKSVNASNYGLSPDRQFVY   75 (719)
T ss_dssp             CCCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECH-HHHHTTTCSEEEECTTSSEEE
T ss_pred             CccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEcc-ccccccceeeEEECCCCCeEE
Confidence            3678999996444 45689999999998887666554 332   489999999999886

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.42  E-value=5.1e-06  Score=38.25  Aligned_cols=58  Identities=12%  Similarity=0.128  Sum_probs=45.7

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeec---cCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGT---ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+..+.|+|+++.++.+..++.+.+|+..+++....+..   .+...+..++|+|+++.++
T Consensus       186 ~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  246 (353)
T 3vgz_A          186 MSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAF  246 (353)
T ss_dssp             TCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred             ccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEE
Confidence            466788999999888888899999999998887766553   1345677899999998664

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.40  E-value=1.2e-05  Score=37.64  Aligned_cols=59  Identities=10%  Similarity=0.001  Sum_probs=42.3

Q ss_pred             cceEEEEECCCCCEEEEec-CCCcEEEEECC-CCceE--EEeecc-CCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTS-ADQTARIWNTE-DFSLV--RELGTA-NQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~~-~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+..+.|+|+++.++++. .+..+++|+++ +++..  ...... +......++|+|++++++
T Consensus       145 ~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~  208 (365)
T 1jof_A          145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLY  208 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred             CcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEE
Confidence            4577899999998776654 46789999998 56542  223211 256789999999998764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.38  E-value=1.5e-06  Score=42.90  Aligned_cols=51  Identities=12%  Similarity=0.154  Sum_probs=42.7

Q ss_pred             ECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061          13 FSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ++|++..+++...++.+.+|+..+++.+..+.. +.. ++.++|+|+++++++
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~-g~~-~~~v~~spdg~~l~v  195 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYA-VHISRMSASGRYLLV  195 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC-STT-EEEEEECTTSCEEEE
T ss_pred             cCCCCEEEEEEcCCCeEEEEECCCceEEEEEec-Ccc-cceEEECCCCCEEEE
Confidence            677788888888999999999999998888874 222 889999999998863

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.38  E-value=1.1e-05  Score=37.12  Aligned_cols=54  Identities=19%  Similarity=0.284  Sum_probs=42.7

Q ss_pred             EEEEECCCCCEE-EEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           9 LHCVFSPDCRLL-ATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         9 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+.|+|+++.+ ++...++.+.+|+..+++.+..+..  ......++|+|++++++
T Consensus       275 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~  329 (353)
T 3vgz_A          275 LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT--PTHPNSLALSADGKTLY  329 (353)
T ss_dssp             CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC--CSEEEEEEECTTSCEEE
T ss_pred             ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec--CCCCCeEEEcCCCCEEE
Confidence            457889998854 5555789999999998888777764  45789999999998654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.37  E-value=1.4e-05  Score=36.96  Aligned_cols=58  Identities=16%  Similarity=0.122  Sum_probs=40.6

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECC-CCceEE--EeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTE-DFSLVR--ELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+..+.|+|+++.+++...++.+.+|++. ++....  ............++|+|++++++
T Consensus       142 ~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~  202 (347)
T 3hfq_A          142 HIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAF  202 (347)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred             CceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEE
Confidence            46679999999966666678889999998 443322  12221334678899999998654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.32  E-value=1.8e-06  Score=43.77  Aligned_cols=56  Identities=16%  Similarity=0.108  Sum_probs=42.9

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCC-----cEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQR-----WVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~i~   64 (65)
                      .....+.|+|+++.++++  ++.+++|++.++.....+.. +..     ....++|||++++|+
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Spdg~~l~   77 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLEN-STFDEFGHSINDYSISPDGQFIL   77 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECT-TTTTTCCSCCCEEEECTTSSEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEec-hhhhhhcccccceEECCCCCEEE
Confidence            346688999999877775  89999999998887666665 332     224478999999876

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.31  E-value=1.8e-05  Score=36.99  Aligned_cols=56  Identities=14%  Similarity=0.065  Sum_probs=40.7

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEE--EEccCCcEEe
Q psy7061           8 GLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDA--AFTLDSKFLL   64 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~i~   64 (65)
                      +....|+|+++.++....+..+++|++.+++....... +...+...  .++|+++.++
T Consensus        83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~dg~~l~  140 (388)
T 3pe7_A           83 TFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV-PAEWVGYGTWVANSDCTKLV  140 (388)
T ss_dssp             SSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-CTTEEEEEEEEECTTSSEEE
T ss_pred             ccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec-hhhcccccceeECCCCCeec
Confidence            34568999999999988888999999998877655554 44444333  3478887764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.28  E-value=5.5e-06  Score=38.03  Aligned_cols=54  Identities=6%  Similarity=-0.012  Sum_probs=41.5

Q ss_pred             EEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          11 CVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +.+.+++..++++..++.+++|+..+++.+..+..+.......++|+|+++.++
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~   58 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAY   58 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEE
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEE
Confidence            345677778888899999999999988887776641222578899999998653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.25  E-value=1.1e-05  Score=38.83  Aligned_cols=57  Identities=11%  Similarity=0.004  Sum_probs=43.6

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCce--EEEe------ec--cCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSL--VREL------GT--ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~~--~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..|.+++|+|+|  ++.+..++.++.|..+....  ...+      ..  .+...|.+++|.+++.+++
T Consensus       163 ~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv  229 (388)
T 1xip_A          163 QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLA  229 (388)
T ss_dssp             ESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred             CCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEE
Confidence            468999999998  56678899999998776553  3344      11  1568899999999988876

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.24  E-value=1.6e-05  Score=40.17  Aligned_cols=55  Identities=15%  Similarity=0.151  Sum_probs=40.9

Q ss_pred             EEEEECCCCCEEEEecCCCc-------------EEEEECCCCc----eEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           9 LHCVFSPDCRLLATTSADQT-------------ARIWNTEDFS----LVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+.|+|+++.++.++.+..             +++|++.++.    .+..... +...+..+.|+|+|++|+
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~-~~~~~~~~~~SpDG~~l~  242 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG-DPTTFLQSDLSRDGKYLF  242 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC-CTTCEEEEEECTTSCCEE
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCC-CCEEEEEEEECCCCCEEE
Confidence            57899999998888877654             9999998665    2222222 446788999999998875

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.23  E-value=2.2e-05  Score=39.75  Aligned_cols=57  Identities=11%  Similarity=0.059  Sum_probs=40.3

Q ss_pred             eEEEEECCCCCEEEEecCCCc----------------EEEEECCCCce--EEEeec-cCCCcEeEEEEccCCcEEe
Q psy7061           8 GLHCVFSPDCRLLATTSADQT----------------ARIWNTEDFSL--VRELGT-ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~i~   64 (65)
                      +..+.|+|+++.++.+..+..                +++|++.++..  ...... .+...+..+.|+|++++|+
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~  248 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVL  248 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEE
Confidence            456899999998887776554                99999886552  122222 1345578899999999876

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.22  E-value=1.7e-05  Score=36.06  Aligned_cols=56  Identities=5%  Similarity=0.121  Sum_probs=44.3

Q ss_pred             cceEEEEECCCCC-EEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCR-LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .....+.|+|+++ .+.+...++.+..|+...+  ...+.. +...+..++++|+++.++
T Consensus        28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~-~~~~~~~l~~~~dg~l~v   84 (296)
T 3e5z_A           28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH-PSHHQNGHCLNKQGHLIA   84 (296)
T ss_dssp             SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEES-SCSSEEEEEECTTCCEEE
T ss_pred             ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEEC-CCCCcceeeECCCCcEEE
Confidence            4567889999988 6777778889999998876  455555 567789999999998765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.18  E-value=5e-05  Score=35.22  Aligned_cols=60  Identities=8%  Similarity=0.098  Sum_probs=45.8

Q ss_pred             ccceEEEEECCCCCEEEEecCC------------------------CcEEEEECCCCceEEEeeccCCCcEeEEEEccCC
Q psy7061           5 RAYGLHCVFSPDCRLLATTSAD------------------------QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS   60 (65)
Q Consensus         5 ~~~v~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   60 (65)
                      .+.+..++++++++.+++...+                        +.+.+|+..+++........+-.....++++|++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3568899999999988777666                        3689999888887665553234578899999999


Q ss_pred             cEEe
Q psy7061          61 KFLL   64 (65)
Q Consensus        61 ~~i~   64 (65)
                      +.++
T Consensus       103 ~l~v  106 (329)
T 3fvz_A          103 NYWV  106 (329)
T ss_dssp             CEEE
T ss_pred             CEEE
Confidence            8765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.15  E-value=2.3e-05  Score=36.97  Aligned_cols=51  Identities=6%  Similarity=0.029  Sum_probs=39.2

Q ss_pred             EEECCCCCEEEEecC-----------CCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          11 CVFSPDCRLLATTSA-----------DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        11 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +.+++++..+.....           ...+.+||+.+.+.+..+.. +.  ...++|+|++++++
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~-~~--p~~ia~spdg~~l~  320 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG-RD--ALSMTIDQQRNLML  320 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC-TT--CCEEEEETTTTEEE
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec-CC--eeEEEECCCCCEEE
Confidence            567888765544321           34799999999999888876 44  99999999999875

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.12  E-value=1.4e-05  Score=37.51  Aligned_cols=57  Identities=9%  Similarity=0.037  Sum_probs=38.4

Q ss_pred             ceEEEE-ECCCCCEEEEecCC-C-----cEEEEECC-CCceEEE---eeccCCCcEeEEEEcc---CCcEEe
Q psy7061           7 YGLHCV-FSPDCRLLATTSAD-Q-----TARIWNTE-DFSLVRE---LGTANQRWVWDAAFTL---DSKFLL   64 (65)
Q Consensus         7 ~v~~~~-~~~~~~~~~~~~~~-~-----~~~~~~~~-~~~~~~~---~~~~~~~~v~~~~~~~---~~~~i~   64 (65)
                      .+..+. |+|+++.+.++..+ .     .+.+|+++ ++.....   ... +......++|+|   ++++++
T Consensus       255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~-~~~~~~~~a~sp~~~dg~~l~  325 (365)
T 1jof_A          255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT-PTSGGHSNAVSPCPWSDEWMA  325 (365)
T ss_dssp             EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC-SSCCTTCCCEEECTTCTTEEE
T ss_pred             ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeec-CCCCcccceecCCCcCCCEEE
Confidence            477889 99999977655532 2     79999986 4554321   222 344566788899   788775

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.12  E-value=2.7e-06  Score=39.70  Aligned_cols=56  Identities=13%  Similarity=0.070  Sum_probs=36.7

Q ss_pred             eEEEEECCCCCEEEEecCC---CcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           8 GLHCVFSPDCRLLATTSAD---QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +..+.|+|+|+.++.....   ..++++++..++....... .......+.|+|+++.|+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~spdg~~l~   96 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEG-KGDNTFGGFISTDERAFF   96 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCS-SCBCTTTCEECTTSSEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecC-CCCccccceECCCCCEEE
Confidence            5667899999987665432   3678888887765433332 222233378999999875

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.07  E-value=1e-05  Score=41.13  Aligned_cols=55  Identities=22%  Similarity=0.029  Sum_probs=38.3

Q ss_pred             ceEEEEECCCCCEEEEecCC-----CcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSAD-----QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+..+.|+|+|+.++.+..+     ..+++|++.+++.+....  ....+..++|+|+ +.++
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~  223 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-DALL  223 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTT-SEEE
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEECC-CEEE
Confidence            56778999999987665432     359999999887654322  1222357889999 7664

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.04  E-value=3.1e-05  Score=35.76  Aligned_cols=53  Identities=17%  Similarity=0.181  Sum_probs=37.9

Q ss_pred             eEEEEECCCCCEEEEecC---------------------------CCcEEEEECCCCceEEEeeccCCCcEeEEEEccCC
Q psy7061           8 GLHCVFSPDCRLLATTSA---------------------------DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS   60 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   60 (65)
                      +..+.|+|+++.++..+.                           ...+++|++.++..+..+.. .  .+..++|+|++
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~--~~~~~~~spdg  182 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P--RFSSGIWHRDK  182 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E--TTCEEEEETTE
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C--CcccccCCCCe
Confidence            678899999988766652                           24688888887766344443 2  67888999998


Q ss_pred             cEEe
Q psy7061          61 KFLL   64 (65)
Q Consensus        61 ~~i~   64 (65)
                       .++
T Consensus       183 -~~~  185 (347)
T 2gop_A          183 -IVV  185 (347)
T ss_dssp             -EEE
T ss_pred             -EEE
Confidence             543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.00  E-value=0.00021  Score=35.97  Aligned_cols=56  Identities=13%  Similarity=0.060  Sum_probs=44.3

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECC--CCceEEEeeccCCCcEeEEEEc----cCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTE--DFSLVRELGTANQRWVWDAAFT----LDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~----~~~~~i~   64 (65)
                      .+..+.++|+++++..++.++.+.++|+.  +.+.+..+..  ......++++    |++++++
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G~~P~~ia~s~~~~pDGk~l~  259 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GSEARSIETSKMEGWEDKYAI  259 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--CSEEEEEEECCSTTCTTTEEE
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--CCCCceeEEccccCCCCCEEE
Confidence            34578899999998888889999999995  6677666654  3456789999    6998875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.00  E-value=0.00013  Score=33.41  Aligned_cols=56  Identities=4%  Similarity=-0.104  Sum_probs=44.4

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEc-cCCcEE
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFT-LDSKFL   63 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~i   63 (65)
                      ....+.+.++++..++....+.|..|+.++++.+..+.. +...+.+++|. |+++.+
T Consensus       200 ~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~-p~~~~t~~~f~g~d~~~L  256 (297)
T 3g4e_A          200 IPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL-PVDKTTSCCFGGKNYSEM  256 (297)
T ss_dssp             EEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC-SSSBEEEEEEESGGGCEE
T ss_pred             CCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC-CCCCceEEEEeCCCCCEE
Confidence            456678888888777777778899999988888877776 55778999998 776654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.94  E-value=0.00012  Score=33.53  Aligned_cols=48  Identities=21%  Similarity=0.097  Sum_probs=39.8

Q ss_pred             CCCEEEEecCCCcEEEEECCCCceEEEeeccCC-CcEeEEEEccCCcEEe
Q psy7061          16 DCRLLATTSADQTARIWNTEDFSLVRELGTANQ-RWVWDAAFTLDSKFLL   64 (65)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~i~   64 (65)
                      .++.+++++.++.+++|+..+++.+-.+.. +. ..++++.+.|+++.++
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~-~~~~~~~~~~~~pdG~ilv   52 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL-EKGWECNSVAATKAGEILF   52 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEEC-CTTCCCCEEEECTTSCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCC-CccCCCcCeEECCCCCEEE
Confidence            357888899999999999989998877776 43 4788899999998876

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.89  E-value=0.00022  Score=32.49  Aligned_cols=57  Identities=11%  Similarity=0.031  Sum_probs=43.1

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      ..+..+.++++++.+++...++.+..|+.++++.+..+.. +...+..++++|+++.+
T Consensus       226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~i~~~~dg~~l  282 (314)
T 1pjx_A          226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC-PFEKPSNLHFKPQTKTI  282 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC-SSSCEEEEEECTTSSEE
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC-CCCCceeEEECCCCCEE
Confidence            3456678888888777776778899999886666555555 55778999999998843

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.86  E-value=4.1e-05  Score=38.90  Aligned_cols=58  Identities=12%  Similarity=-0.001  Sum_probs=38.0

Q ss_pred             cccceEEEEECCCCCEEEEec-----CCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           4 HRAYGLHCVFSPDCRLLATTS-----ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +...+..+.|+|++++++.+.     ....++++++.+++.+.....  ......++|+ +++.|+
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~--~~k~~~~~Ws-Dg~~l~  189 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK--DVKFSGISWL-GNEGFF  189 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE--EEESCCCEEE-TTTEEE
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC--CceeccEEEe-CCCEEE
Confidence            334577889999999876422     234689999998876543221  1123567888 887664

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.85  E-value=0.00027  Score=32.18  Aligned_cols=60  Identities=7%  Similarity=-0.064  Sum_probs=42.4

Q ss_pred             ccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeec---cCCCcEeEEEEccCCcEEe
Q psy7061           5 RAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGT---ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         5 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~i~   64 (65)
                      ...+..+.++++++.+++...++.+.+|+..+++.......   .....+..++++|+++.++
T Consensus        68 ~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v  130 (296)
T 3e5z_A           68 SHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWF  130 (296)
T ss_dssp             CSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEE
T ss_pred             CCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEE
Confidence            34577889999999887777778899999877665433221   1123456788999998776

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.83  E-value=0.00029  Score=31.87  Aligned_cols=59  Identities=15%  Similarity=0.291  Sum_probs=42.6

Q ss_pred             cceEEEEECCCCCEEEEecCCC-cEEEEECCCCceEEEeecc-CCCcEeEEEEccCCcEEeC
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQ-TARIWNTEDFSLVRELGTA-NQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~i~s   65 (65)
                      ..+..+.++++++.+++...++ .+.+|+.. ++.+..+... ....+..++++|+++.+++
T Consensus       207 ~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs  267 (286)
T 1q7f_A          207 NYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA  267 (286)
T ss_dssp             CSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE
T ss_pred             CCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE
Confidence            4577899999998887777665 99999954 5555555441 2234778999999987653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.80  E-value=0.00017  Score=33.77  Aligned_cols=54  Identities=15%  Similarity=0.049  Sum_probs=35.5

Q ss_pred             ceEEEEECCCCCEEEEecCC-----CcEEEEECCCCceEEEeeccCCCcEeEEEEcc-CCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSAD-----QTARIWNTEDFSLVRELGTANQRWVWDAAFTL-DSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~i~   64 (65)
                      .+..+.|+|+++.++..+.+     ..+++|++.++........ . . .. ..|+| +++.++
T Consensus       239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~-~-~~-~~~s~~dg~~l~  298 (396)
T 3c5m_A          239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P-P-CS-HLMSNFDGSLMV  298 (396)
T ss_dssp             EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C-S-EE-EEEECSSSSEEE
T ss_pred             cccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C-C-CC-CCccCCCCceEE
Confidence            46678999999876555432     3399999887765433322 1 1 23 88999 988765

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.71  E-value=0.00049  Score=31.11  Aligned_cols=58  Identities=10%  Similarity=0.256  Sum_probs=42.7

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeec-cCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGT-ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+..+.++++++.+++...++.+++|+.. +..+..+.. .+......++++++++.++
T Consensus       164 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v  222 (286)
T 1q7f_A          164 EFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILI  222 (286)
T ss_dssp             SSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEE
T ss_pred             CCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEE
Confidence            457789999998877777778899999974 445545543 1235678899999988765

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.70  E-value=0.00067  Score=32.41  Aligned_cols=55  Identities=16%  Similarity=0.198  Sum_probs=39.1

Q ss_pred             EEEECCCCCEEEEec----------CCCcEEEEECCCCceEEEeecc--C----CCcEeEEEEccCCcEEe
Q psy7061          10 HCVFSPDCRLLATTS----------ADQTARIWNTEDFSLVRELGTA--N----QRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        10 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~--~----~~~v~~~~~~~~~~~i~   64 (65)
                      .+.++|+++.+..+.          .++.+.+++..+.+.+..+...  .    ...-..++++|++++++
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~  140 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLL  140 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEE
Confidence            788999998876664          2567899999877766655431  0    12345789999999875

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=97.69  E-value=0.00077  Score=32.67  Aligned_cols=51  Identities=8%  Similarity=-0.156  Sum_probs=37.2

Q ss_pred             ccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcE
Q psy7061           5 RAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF   62 (65)
Q Consensus         5 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   62 (65)
                      ...+..+.+.+.  .++.+..++.+.+|++..+....     ....|.+++|+|+|..
T Consensus       126 ~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG~~  176 (388)
T 1xip_A          126 EKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQLA  176 (388)
T ss_dssp             SSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSEEE
T ss_pred             ecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCceE
Confidence            344666666543  37778899999999998766532     2357999999999843

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.65  E-value=0.00068  Score=31.26  Aligned_cols=59  Identities=15%  Similarity=0.071  Sum_probs=41.7

Q ss_pred             cceEEEEECCCCCEEEEecCC----CcEEEEECCCCceEEEeec-cCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSAD----QTARIWNTEDFSLVRELGT-ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+..+.++++++.+++...+    +.+..|+...+.....+.. .....+..++++|+++.++
T Consensus        87 ~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v  150 (333)
T 2dg1_A           87 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYF  150 (333)
T ss_dssp             SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEE
Confidence            457889999999877766655    5788998876654423221 1345688999999987765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.56  E-value=0.0011  Score=30.95  Aligned_cols=57  Identities=11%  Similarity=0.138  Sum_probs=40.4

Q ss_pred             eEEEEECCCCCEEEEecCC----------CcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           8 GLHCVFSPDCRLLATTSAD----------QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ...+.++++++.+++...+          +.+.+++..+++....+..........++++|+++.+.
T Consensus       174 p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~ly  240 (328)
T 3dsm_A          174 PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLY  240 (328)
T ss_dssp             BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEE
T ss_pred             ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEE
Confidence            3456778888876666554          67999999888766555431234688999999887664

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.54  E-value=0.00092  Score=29.88  Aligned_cols=58  Identities=7%  Similarity=-0.137  Sum_probs=41.7

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+..+.+++++..+++...++.+..|+............ +...+..++++++++.++
T Consensus       192 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~-~~~~p~~i~~~~~g~l~v  249 (270)
T 1rwi_B          192 TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFT-GLNTPLAVAVDSDRTVYV  249 (270)
T ss_dssp             CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCC-SCSCEEEEEECTTCCEEE
T ss_pred             CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccC-CCCCceeEEECCCCCEEE
Confidence            4567889999888777777788899999875443322222 335688999999988665

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.50  E-value=0.00024  Score=34.07  Aligned_cols=55  Identities=15%  Similarity=0.080  Sum_probs=40.7

Q ss_pred             EEEECCCCCEEEEec----------CCCcEEEEECCCCceEEEeecc--C----CCcEeEEEEccCCcEEe
Q psy7061          10 HCVFSPDCRLLATTS----------ADQTARIWNTEDFSLVRELGTA--N----QRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        10 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~--~----~~~v~~~~~~~~~~~i~   64 (65)
                      .+.++|+++.+..+.          .++.+.++|+.+.+.+..+.-+  .    ......++++|++++++
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~ly  139 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLL  139 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEE
Confidence            688999998765554          3578999999999888887541  0    13456788899998765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.47  E-value=0.0015  Score=30.41  Aligned_cols=58  Identities=7%  Similarity=0.096  Sum_probs=40.5

Q ss_pred             cceEEEEECC-CCCEEEEec-CCCcEEEEECCCCceEEEeecc---------CCCcEeEEEEccC-CcEEe
Q psy7061           6 AYGLHCVFSP-DCRLLATTS-ADQTARIWNTEDFSLVRELGTA---------NQRWVWDAAFTLD-SKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~-~~~i~   64 (65)
                      .....+.++| ++..+++.+ .++.+++|+ .++..+..+...         .-.....++++|+ +..++
T Consensus       143 ~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v  212 (329)
T 3fvz_A          143 CQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCV  212 (329)
T ss_dssp             SSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEE
T ss_pred             CCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEE
Confidence            3578899999 788877775 688999999 456665555420         1133788999998 66554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.43  E-value=0.0026  Score=32.83  Aligned_cols=55  Identities=9%  Similarity=0.033  Sum_probs=36.5

Q ss_pred             EEEEECCCCCEEEEecCCC--------------cEEEEECCCCce--EEEeec-cCCCcEeEEEEccCCcEEe
Q psy7061           9 LHCVFSPDCRLLATTSADQ--------------TARIWNTEDFSL--VRELGT-ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+.|+|+ +.++.+..+.              .+++|++.++..  ...+.. .+...+..+.|+|+|++|+
T Consensus       212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~  283 (741)
T 1yr2_A          212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVV  283 (741)
T ss_dssp             CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEE
T ss_pred             ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEE
Confidence            46789999 8877766543              388888865542  222222 1223588999999998875

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.34  E-value=0.0019  Score=28.83  Aligned_cols=57  Identities=11%  Similarity=-0.010  Sum_probs=40.1

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+..+.++++++.+++...++.+..|+............ .......+++++++..++
T Consensus       151 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~g~l~v  207 (270)
T 1rwi_B          151 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT-DITAPWGIAVDEAGTVYV  207 (270)
T ss_dssp             SCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS-SCCSEEEEEECTTCCEEE
T ss_pred             CceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeeccc-CCCCceEEEECCCCCEEE
Confidence            456788899888777776778899999876554333222 335678889998886654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.30  E-value=0.0028  Score=29.76  Aligned_cols=57  Identities=11%  Similarity=0.080  Sum_probs=40.6

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           8 GLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ...+.+++++..+++...++.|..|+..+++.........-.....+++.++++.++
T Consensus       250 pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v  306 (343)
T 2qe8_A          250 CDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYF  306 (343)
T ss_dssp             CSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEE
T ss_pred             CceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEE
Confidence            446788899998888888899999998455533222221235678999999887765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.28  E-value=0.00074  Score=32.73  Aligned_cols=55  Identities=18%  Similarity=0.325  Sum_probs=39.2

Q ss_pred             EEEECCCCCEEEEec----------CCCcEEEEECCCCceEEEeeccC------CCcEeEEEEccCCcEEe
Q psy7061          10 HCVFSPDCRLLATTS----------ADQTARIWNTEDFSLVRELGTAN------QRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        10 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~i~   64 (65)
                      .+.++|+++.+..++          .++.+.+||..+.+.+..+.-..      ...-..++++|+++++.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~ly  152 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLL  152 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEE
Confidence            488999998765544          35679999999988877765311      12456788999998764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.22  E-value=0.003  Score=28.79  Aligned_cols=58  Identities=5%  Similarity=-0.114  Sum_probs=39.2

Q ss_pred             ceEEEEECCCCCEEEE-------ecCCCcEEEEECCCCceEEEee---ccCCCcEeEEEEccC-CcEEe
Q psy7061           7 YGLHCVFSPDCRLLAT-------TSADQTARIWNTEDFSLVRELG---TANQRWVWDAAFTLD-SKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~-~~~i~   64 (65)
                      ....+.|++++..+++       ...++.+..|+..+++......   ..+...+..++++++ ++.++
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v   87 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV   87 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE
Confidence            4567889988887776       4567889999977665432222   002356788999998 77554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.20  E-value=0.0033  Score=28.83  Aligned_cols=55  Identities=11%  Similarity=0.010  Sum_probs=39.8

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+..+.+.|+++.+++  .+..+..++. +++.+-.+.......+..+.+.++++.++
T Consensus        38 ~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv   92 (276)
T 3no2_A           38 ECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALV   92 (276)
T ss_dssp             CCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEE
T ss_pred             CCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEE
Confidence            4567788999998773  4667888898 67777776652235677778888887765

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.19  E-value=0.0036  Score=28.83  Aligned_cols=55  Identities=11%  Similarity=0.097  Sum_probs=39.4

Q ss_pred             ceEEEEECCCCC-EEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCR-LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ......|+++++ .+.+...++.+..|+.. +. ...+.. ....+..++++++++.++
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~-~~~~~~gl~~d~dG~l~v  101 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLD-ATAFTNGNAVDAQQRLVH  101 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEE-SCSCEEEEEECTTSCEEE
T ss_pred             CccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeC-CCCccceeeECCCCCEEE
Confidence            456788999887 55666678889999874 44 334444 456788899999988765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.17  E-value=0.00087  Score=32.84  Aligned_cols=55  Identities=24%  Similarity=0.370  Sum_probs=39.2

Q ss_pred             EEEECCCCCEEEEec----------CCCcEEEEECCCCceEEEeecc--C----CCcEeEEEEccCCcEEe
Q psy7061          10 HCVFSPDCRLLATTS----------ADQTARIWNTEDFSLVRELGTA--N----QRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        10 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~--~----~~~v~~~~~~~~~~~i~   64 (65)
                      .+.++|+++.+..+.          .++.+.++|..+.+.+..+.-.  .    ......++++|++++++
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~ly  192 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLL  192 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEE
Confidence            788999998765554          3567999999988887766431  0    12346788899998765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.15  E-value=0.005  Score=29.84  Aligned_cols=56  Identities=16%  Similarity=0.061  Sum_probs=39.6

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .....+.++++++.+++...++.++.|+...+........  ..... ++|+|+++.++
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~--~~~~~-ia~~~~g~~l~  186 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG--FKGGK-PAVTKDKQRVY  186 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET--CCBCB-CEECTTSSEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc--CCCCc-eeEecCCCcEE
Confidence            3577889999888777777778999999887665544443  22233 88888887553

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.14  E-value=0.0051  Score=31.22  Aligned_cols=45  Identities=11%  Similarity=0.142  Sum_probs=36.4

Q ss_pred             CEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          18 RLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+++...++.+.++|..+++.+..+..  ....+.+.++|++++++
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~--g~~p~~v~~SpDGr~ly  212 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEIKTVLDT--GYAVHISRLSASGRYLF  212 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEEC--SSCEEEEEECTTSCEEE
T ss_pred             eEEEEeCCCCeEEEEECCCCeEEEEEeC--CCCccceEECCCCCEEE
Confidence            4567777789999999999988877764  44677999999999875

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.10  E-value=0.0041  Score=28.04  Aligned_cols=60  Identities=8%  Similarity=-0.044  Sum_probs=41.7

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ....+..+.+.++++.+++...++.+..|+.. +.............+..+++.++++.++
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v   72 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWF   72 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEE
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEE
Confidence            34568889999999877776667889999887 4433222111346788888888887664

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.05  E-value=0.0011  Score=34.32  Aligned_cols=55  Identities=13%  Similarity=0.037  Sum_probs=35.2

Q ss_pred             ceEEEEEC-CCCCEEEEecC-CC----cEEEEECCCC-ceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFS-PDCRLLATTSA-DQ----TARIWNTEDF-SLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~-~~~~~~~~~~~-~~----~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+....|+ |++++++.... ++    .++++++.++ +.+....   ......++|+|+++.|+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---~~~~~~~~WspDg~~l~  236 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---SGTNGEIVWGPDHTSLF  236 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---EEECSCCEECSSTTEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---cCceeeEEEecCCCEEE
Confidence            46678999 99987764332 22    4889999877 5321111   11235688999987764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=96.86  E-value=0.0089  Score=27.92  Aligned_cols=55  Identities=13%  Similarity=0.035  Sum_probs=39.6

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEc-cCCcEE
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFT-LDSKFL   63 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~i   63 (65)
                      .+..+.+.+++..+++...++.+..|+. .++.+..+.. +...+.+++|. ++++.+
T Consensus       231 ~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~-~~~~~~~~af~g~d~~~L  286 (326)
T 2ghs_A          231 GMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV-PGKQTTCPAFIGPDASRL  286 (326)
T ss_dssp             EEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC-SCSBEEEEEEESTTSCEE
T ss_pred             CCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEEC-CCCCcEEEEEecCCCCEE
Confidence            3456778888887776666678888987 4666666655 55678999998 887654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.86  E-value=0.014  Score=30.50  Aligned_cols=55  Identities=16%  Similarity=0.046  Sum_probs=34.9

Q ss_pred             EEEECCCCCEEEEecCC-----CcEEEEECCCCce--EEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          10 HCVFSPDCRLLATTSAD-----QTARIWNTEDFSL--VRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        10 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+.|+|+++.++....+     ..++.+++.++..  ...+..........+.|+|++++|+
T Consensus       225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~  286 (751)
T 2xe4_A          225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLC  286 (751)
T ss_dssp             CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEE
T ss_pred             eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEE
Confidence            57899999877665543     2577777765432  2222221234456789999999875

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=96.74  E-value=0.013  Score=28.15  Aligned_cols=52  Identities=6%  Similarity=-0.121  Sum_probs=37.0

Q ss_pred             EEECCCCCEEEEecC----------CCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCc-EEe
Q psy7061          11 CVFSPDCRLLATTSA----------DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK-FLL   64 (65)
Q Consensus        11 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~i~   64 (65)
                      +.++++++.+.....          .+.+.+.|..+.+.+..+..  ......++|+|+++ .++
T Consensus       272 ~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~--g~~p~~i~~s~Dg~~~l~  334 (373)
T 2mad_H          272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL--GHDVDAISVAQDGGPDLY  334 (373)
T ss_pred             EEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC--CCCcCeEEECCCCCeEEE
Confidence            567777765544322          34688889988888888764  44689999999998 443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.62  E-value=0.016  Score=29.89  Aligned_cols=55  Identities=16%  Similarity=0.080  Sum_probs=35.8

Q ss_pred             EEEEECCCCCEEEEecCCC-------------cEEEEECCCCce--EEEeecc--CCCcEeEEEEccCCcEEe
Q psy7061           9 LHCVFSPDCRLLATTSADQ-------------TARIWNTEDFSL--VRELGTA--NQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~--~~~~~~~--~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+.|+ |++.++.+..+.             .|++|++.+...  ...+...  +...+..+.|+|++++|+
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~  249 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLL  249 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEE
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEE
Confidence            456788 888877766553             488888875432  2222221  123467899999999874

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=96.37  E-value=0.028  Score=27.53  Aligned_cols=49  Identities=12%  Similarity=0.064  Sum_probs=36.9

Q ss_pred             ECCCCCEEEEecC-----CCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          13 FSPDCRLLATTSA-----DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        13 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..|+++.+.....     ++.+.+.|..+.+.+..+.. .... . ++++|+++.++
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v-G~~P-~-va~spDG~~ly   93 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG-GFLP-N-PVVADDGSFIA   93 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE-CSSC-E-EEECTTSSCEE
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC-CCCC-c-EEECCCCCEEE
Confidence            4678877666554     56899999999998888875 3444 4 99999998764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.37  E-value=0.025  Score=29.41  Aligned_cols=50  Identities=14%  Similarity=0.111  Sum_probs=35.3

Q ss_pred             CCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          15 PDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+..++.++.++.++.||.++++.+-.+.........-+.|..+|++++
T Consensus       484 tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv  533 (689)
T 1yiq_A          484 TAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV  533 (689)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence            35567788889999999999999988777652222223466667777654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=96.28  E-value=0.025  Score=26.03  Aligned_cols=57  Identities=12%  Similarity=0.001  Sum_probs=38.4

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeec---cCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGT---ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+..+.++++++.+++.  +..+..|+..++........   .....+..++++|+++.++
T Consensus        54 ~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~  113 (297)
T 3g4e_A           54 APVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFA  113 (297)
T ss_dssp             SCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEE
T ss_pred             CceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEE
Confidence            356788899998865544  46788899876654322221   1234578899999998765

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.26  E-value=0.037  Score=27.86  Aligned_cols=56  Identities=7%  Similarity=0.114  Sum_probs=38.7

Q ss_pred             EEEEECCCCCEEEEec-------------------CCCcEEEEECCCCceEEEeecc-CCCcEeEEEE--ccCCcEEe
Q psy7061           9 LHCVFSPDCRLLATTS-------------------ADQTARIWNTEDFSLVRELGTA-NQRWVWDAAF--TLDSKFLL   64 (65)
Q Consensus         9 ~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~--~~~~~~i~   64 (65)
                      +.+.|+|+++.++++.                   ....|.+|++.+++.+.++... .......+.|  +|+++++.
T Consensus       191 Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aY  268 (462)
T 2ece_A          191 YDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGF  268 (462)
T ss_dssp             CCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEE
T ss_pred             ceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEE
Confidence            3477799888877774                   3688999999988777666541 1134445555  99987654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=96.23  E-value=0.027  Score=25.97  Aligned_cols=58  Identities=10%  Similarity=0.019  Sum_probs=37.9

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeec---cCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGT---ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+..+.++++++.+++....+.+..++.+ +........   .....+..+++.|+++.++
T Consensus        86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~  146 (305)
T 3dr2_A           86 AFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWF  146 (305)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEE
T ss_pred             CccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEE
Confidence            346778899999877766666788888876 443222111   0123456788899988775

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.22  E-value=0.025  Score=25.53  Aligned_cols=57  Identities=11%  Similarity=0.005  Sum_probs=38.6

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeec-cCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGT-ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+..+.+.+++..+++...++.+..|+.. +.. ..+.. .....+..+++.++++.++
T Consensus        57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v  114 (299)
T 2z2n_A           57 AKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWF  114 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEE
T ss_pred             CceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEE
Confidence            457788888888877776667888888876 332 22221 1345678888888887654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=96.20  E-value=0.03  Score=26.20  Aligned_cols=56  Identities=11%  Similarity=0.012  Sum_probs=36.9

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeec---cCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGT---ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+..+.+.++++.++.. . ..+..|+..++........   .....+..++++|+++.++
T Consensus        91 ~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v  149 (326)
T 2ghs_A           91 MGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWI  149 (326)
T ss_dssp             CEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEE
T ss_pred             cceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEE
Confidence            46778888888766654 3 3488889877664322221   0124678899999998765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=95.86  E-value=0.055  Score=26.35  Aligned_cols=56  Identities=7%  Similarity=0.072  Sum_probs=40.9

Q ss_pred             ceEEEEECCCCCEEEEec-CCCcEEEEECCCCceEEEeeccC---------------CCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTS-ADQTARIWNTEDFSLVRELGTAN---------------QRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~i~   64 (65)
                      ....+.++++++.+++-. .++.++.|++.++... .+.+ +               -.....+++++++..++
T Consensus       324 ~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g-~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyV  395 (409)
T 3hrp_A          324 QPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAG-QVDVASQIDGTPLEATFNYPYDICYDGEGGYWI  395 (409)
T ss_dssp             SEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEE-CTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEE
T ss_pred             CCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeC-CCCCCCcCCCChhceEeCCceEEEEcCCCCEEE
Confidence            467889999999777777 7889999997666543 3332 1               13578899999887665

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=95.64  E-value=0.092  Score=27.36  Aligned_cols=51  Identities=20%  Similarity=0.215  Sum_probs=36.2

Q ss_pred             eEEEEECCCCCEEEE-ecCCCcEEEEECCCCc------------eEEEeeccCCCcEeEEEEccCC
Q psy7061           8 GLHCVFSPDCRLLAT-TSADQTARIWNTEDFS------------LVRELGTANQRWVWDAAFTLDS   60 (65)
Q Consensus         8 v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~   60 (65)
                      .-.+.++|||++++. ......+.+++..+.+            ......  -..+...++|+|+|
T Consensus       279 PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~--vG~gP~h~aF~~dG  342 (595)
T 1fwx_A          279 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE--LGLGPLHTAFDGRG  342 (595)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB--CCSCEEEEEECTTS
T ss_pred             ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC--CCCCcceEEECCCC
Confidence            346889999987654 4467889999998542            222332  35677889999999

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=95.63  E-value=0.053  Score=24.48  Aligned_cols=58  Identities=7%  Similarity=-0.135  Sum_probs=39.6

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+..+.+.+++..+++...++.+..++.. ++............+..+++.++++.++
T Consensus        20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v   77 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWF   77 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEE
T ss_pred             CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEE
Confidence            456788889988877777677889999877 4433211111335678888888877654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=95.60  E-value=0.055  Score=24.44  Aligned_cols=58  Identities=7%  Similarity=-0.062  Sum_probs=38.9

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+..+.+.+++..+++...++.+..++.. +.............+..+++.++++.++
T Consensus        62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v  119 (300)
T 2qc5_A           62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWF  119 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEE
T ss_pred             CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEE
Confidence            456778888888877776667888888877 4432211111235678888888887654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=95.59  E-value=0.085  Score=26.64  Aligned_cols=58  Identities=10%  Similarity=-0.018  Sum_probs=38.4

Q ss_pred             ceEEEEECCCCCEE-EEecCCCcEEEEECCCC---ceEEEeeccCC-------------CcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLL-ATTSADQTARIWNTEDF---SLVRELGTANQ-------------RWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-------------~~v~~~~~~~~~~~i~   64 (65)
                      ....+.++++++.+ ++....+.|.+|++...   +.+........             ..-..++++|+|++++
T Consensus       322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~Ly  396 (462)
T 2ece_A          322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVY  396 (462)
T ss_dssp             CCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEE
T ss_pred             ceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEE
Confidence            46778899999876 44445788999998632   33433332100             1357888999998875

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=95.53  E-value=0.1  Score=27.25  Aligned_cols=49  Identities=10%  Similarity=0.060  Sum_probs=33.4

Q ss_pred             CCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061          15 PDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      ..+..++.++.++.++.|+..+++.+..+.........-+.|.++++.+
T Consensus       486 ~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~  534 (677)
T 1kb0_A          486 TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY  534 (677)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             eCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence            3456677788899999999999998888765222222344555666544

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=95.40  E-value=0.12  Score=26.94  Aligned_cols=57  Identities=19%  Similarity=0.026  Sum_probs=37.5

Q ss_pred             eEEEEECCCCCEEEEecCC----------C--cEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           8 GLHCVFSPDCRLLATTSAD----------Q--TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .=.+.|++.|.+++....+          +  .+...+...++....+..+...++..++|+|+++.++
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlf  546 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLF  546 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEE
Confidence            3467899998876665432          1  2333344455555444444568999999999998875

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=95.09  E-value=0.1  Score=24.48  Aligned_cols=54  Identities=13%  Similarity=0.000  Sum_probs=38.0

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           8 GLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ...+.+. +++.+++...++.+.+++..+++.+..+..  ......++++++++.++
T Consensus        46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~--~~~p~~i~~~~~g~lyv   99 (328)
T 3dsm_A           46 AQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG--FTSPRYIHFLSDEKAYV   99 (328)
T ss_dssp             EEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC--CSSEEEEEEEETTEEEE
T ss_pred             ceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC--CCCCcEEEEeCCCeEEE
Confidence            3445553 345556666678999999999988777753  45678888888886544

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=95.04  E-value=0.1  Score=24.21  Aligned_cols=55  Identities=13%  Similarity=0.038  Sum_probs=37.5

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ....+.|+++++.+++-...+.+..++.... ......  .......+++.++++.++
T Consensus        33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~--~~~~p~gia~~~dG~l~v   87 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT--VEGKVSGLAFTSNGDLVA   87 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE--CSSEEEEEEECTTSCEEE
T ss_pred             CcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe--CCCCceeEEEcCCCcEEE
Confidence            4567788888887776667788888887643 322232  235677888888887654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=95.02  E-value=0.028  Score=29.11  Aligned_cols=58  Identities=17%  Similarity=0.206  Sum_probs=38.2

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCC----------CceEEEeeccCCCcE-----eEEEEccCCcEEeC
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTED----------FSLVRELGTANQRWV-----WDAAFTLDSKFLLT   65 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~v-----~~~~~~~~~~~i~s   65 (65)
                      ....+.|+++|...++...++.+..|+++.          ...+..+.. +...-     .....+|+|+++++
T Consensus       332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV-~yqpGh~~~~~g~t~~~DGk~l~~  404 (595)
T 1fwx_A          332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV-HYQPGHLKTVMGETLDATNDWLVC  404 (595)
T ss_dssp             CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC-SSCEEEEEETTTTSTTCCSSEEEE
T ss_pred             CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec-ccccccceeccceEeCCCCCEEEE
Confidence            356789999995556777899999999876          344545544 33321     12345788888763

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=94.87  E-value=0.14  Score=24.93  Aligned_cols=50  Identities=6%  Similarity=-0.113  Sum_probs=36.4

Q ss_pred             ceEEEEECCCCC-EEEEec-CCCcEEEEECCCCceEEEeeccCCCcEeEEEEcc
Q psy7061           7 YGLHCVFSPDCR-LLATTS-ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL   58 (65)
Q Consensus         7 ~v~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   58 (65)
                      ....+.|+++++ .+++.. .++.|.++|+.+.+.+..+..  ....+.+++.+
T Consensus       315 ~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v--g~~P~~i~~~~  366 (368)
T 1mda_H          315 DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL--DKGPESLSVQN  366 (368)
T ss_dssp             EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC--CSCCCEEECCC
T ss_pred             CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC--CCCCCEEEeec
Confidence            356789999987 456666 589999999999998888774  33344555543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=94.72  E-value=0.17  Score=25.20  Aligned_cols=46  Identities=9%  Similarity=0.009  Sum_probs=33.7

Q ss_pred             CCCEEEEecC-C----CcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          16 DCRLLATTSA-D----QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        16 ~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +++.+..... .    +.+.++|..+.+.+..+.. ....  .++++|+++.++
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v-G~~P--gia~SpDgk~ly  133 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG-GFLP--HPVAAEDGSFFA  133 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-CSSC--EEEECTTSSCEE
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC-CCCC--ceEECCCCCEEE
Confidence            4555544443 2    5899999999999888876 4444  899999998764

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=94.72  E-value=0.25  Score=27.11  Aligned_cols=37  Identities=14%  Similarity=0.170  Sum_probs=29.3

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL   43 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   43 (65)
                      .+.++...++...+.+-+.|+.+++|++.++.++.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            3556666667778889999999999999988776653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=94.14  E-value=0.24  Score=24.48  Aligned_cols=56  Identities=7%  Similarity=0.090  Sum_probs=35.8

Q ss_pred             eEEEEECC-CCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061           8 GLHCVFSP-DCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         8 v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      ...+.++| ++..+++-...+.+..++.+...............-..++++|+++++
T Consensus       228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l  284 (430)
T 3tc9_A          228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA  284 (430)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred             ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence            34566788 677666666778888888875544222222122446789999999843

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=94.02  E-value=0.21  Score=23.55  Aligned_cols=57  Identities=16%  Similarity=0.041  Sum_probs=37.7

Q ss_pred             cccceEEEEECCCCCEEEEecC-----CCcEEEEECCCCceEEEeec-----cCCCcEeEEEEccCC
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSA-----DQTARIWNTEDFSLVRELGT-----ANQRWVWDAAFTLDS   60 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~   60 (65)
                      +...+..+.++++++.++.-..     ...+..|++.+++.+..+..     .+......+++++++
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~  131 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIH  131 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTT
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCC
Confidence            4457888999998875554322     47899999988876655542     012345788888753

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=93.37  E-value=0.44  Score=25.08  Aligned_cols=58  Identities=19%  Similarity=0.024  Sum_probs=37.3

Q ss_pred             ceEEEEECCCCCEEEEecCC------------CcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSAD------------QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..-.+.|.++|.+.+.....            ..+..++..+++....+........+.++|+|+++.|+
T Consensus       477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLf  546 (592)
T 4a9v_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLF  546 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEE
T ss_pred             CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEE
Confidence            45678899988876643321            13455555556554444432346789999999998875

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=93.31  E-value=0.28  Score=22.73  Aligned_cols=61  Identities=13%  Similarity=0.096  Sum_probs=39.8

Q ss_pred             ccccceEEEEECCCCC-EEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           3 AHRAYGLHCVFSPDCR-LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +-...+..+.|+|++. .++....++.+...+.. ++.+..+.-......-.+++.+++.+++
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~v   85 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVI   85 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEE
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEE
Confidence            3345688999999765 44556677778888887 6666665321234566677777766644

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.20  E-value=0.28  Score=27.39  Aligned_cols=36  Identities=14%  Similarity=0.227  Sum_probs=27.7

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEECCCCceEEEee
Q psy7061           9 LHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELG   44 (65)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   44 (65)
                      .++...++...+++-+.|+.+++|++.++.++.+..
T Consensus       241 vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          241 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             SCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             EEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            344445566788899999999999999988776643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=92.41  E-value=0.41  Score=22.23  Aligned_cols=53  Identities=13%  Similarity=-0.017  Sum_probs=34.4

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEECCCCceEE--EeeccCCCcEeEEEEc---cCCcEE
Q psy7061           9 LHCVFSPDCRLLATTSADQTARIWNTEDFSLVR--ELGTANQRWVWDAAFT---LDSKFL   63 (65)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~---~~~~~i   63 (65)
                      ..+.+.++|+.+++....+.|..++.. ++...  .... .-....+++|.   |+++.+
T Consensus       215 ~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~-~~~~p~~~a~~g~~~d~~~L  272 (306)
T 2p4o_A          215 DDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ-GVIGSTAVAFGQTEGDCTAI  272 (306)
T ss_dssp             SSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG-TCTTEEEEEECCSTTTTTEE
T ss_pred             CCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc-ccCCceEEEEecccCCCCEE
Confidence            346677788877776667888888865 44422  2222 23567889998   786554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=91.63  E-value=0.78  Score=23.78  Aligned_cols=48  Identities=13%  Similarity=0.070  Sum_probs=31.6

Q ss_pred             CCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          17 CRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +..++.++.++.++.++.++++.+-.+.........-+.|..++++++
T Consensus       497 gglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv  544 (582)
T 1flg_A          497 GNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence            445667888999999999999988777651111112255556776553

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=91.28  E-value=0.74  Score=22.88  Aligned_cols=54  Identities=9%  Similarity=0.153  Sum_probs=32.8

Q ss_pred             EEEEECC-CCCEEEEecCCCcEEEEECCCCceEEEe-eccCCCcEeEEEEccCCcE
Q psy7061           9 LHCVFSP-DCRLLATTSADQTARIWNTEDFSLVREL-GTANQRWVWDAAFTLDSKF   62 (65)
Q Consensus         9 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~   62 (65)
                      ..+.+++ ++..+++-..++.++.++..++.....+ .......-..++++|+++.
T Consensus       231 ~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~  286 (433)
T 4hw6_A          231 KTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW  286 (433)
T ss_dssp             CCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred             CEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence            4466777 6676666666778888887756542222 2111222346899999873

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=90.67  E-value=0.96  Score=23.11  Aligned_cols=57  Identities=16%  Similarity=0.202  Sum_probs=39.0

Q ss_pred             ccceEEEEECCCC---CEEEEecCCCcEEEEECCCCc--eEEEeec--------cCCCcEeEEEEccCCcE
Q psy7061           5 RAYGLHCVFSPDC---RLLATTSADQTARIWNTEDFS--LVRELGT--------ANQRWVWDAAFTLDSKF   62 (65)
Q Consensus         5 ~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--------~~~~~v~~~~~~~~~~~   62 (65)
                      ...|..+.|+|-+   ..++.-..|+.+++|++....  +. .+..        .....+.+++|.+++-.
T Consensus       124 ~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lT  193 (452)
T 3pbp_A          124 KSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLT  193 (452)
T ss_dssp             CCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSC
T ss_pred             CCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcE
Confidence            3568999999954   578888999999999998521  11 1211        12266778888776543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=89.26  E-value=1  Score=21.75  Aligned_cols=29  Identities=17%  Similarity=0.066  Sum_probs=22.5

Q ss_pred             CCCEEEEecCCCcEEEEECCCCceEEEee
Q psy7061          16 DCRLLATTSADQTARIWNTEDFSLVRELG   44 (65)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   44 (65)
                      ++..++.++.++.++.|+..+++.+-.+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~   36 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK   36 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEec
Confidence            46678888889999999998887765443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=89.09  E-value=0.91  Score=20.52  Aligned_cols=54  Identities=6%  Similarity=-0.162  Sum_probs=32.6

Q ss_pred             eEEEEECCCCC-EEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcE
Q psy7061           8 GLHCVFSPDCR-LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF   62 (65)
Q Consensus         8 v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   62 (65)
                      +..+.+++++. .+.+-...+.+..++++.......... .-.....+++++++..
T Consensus        38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-~~~~p~~ia~d~~~~~   92 (267)
T 1npe_A           38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ-DLGSPEGIALDHLGRT   92 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT-TCCCEEEEEEETTTTE
T ss_pred             EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEEC-CCCCccEEEEEecCCe
Confidence            45677888654 445555577888888875443222222 2246678888876443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=87.66  E-value=1.9  Score=22.62  Aligned_cols=48  Identities=8%  Similarity=0.075  Sum_probs=30.5

Q ss_pred             CCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          17 CRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +..++.++.++.++.++.++++.+-.+.........-+.|..++++++
T Consensus       484 gg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv  531 (599)
T 1w6s_A          484 GDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (599)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEE
Confidence            455666788999999999999887766541111122344455666543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=87.26  E-value=1.8  Score=21.81  Aligned_cols=53  Identities=21%  Similarity=0.126  Sum_probs=33.5

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceE--EEeec-----cCCCcEeEEEEccC
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLV--RELGT-----ANQRWVWDAAFTLD   59 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~v~~~~~~~~   59 (65)
                      ....+.|.|+++.+++....+.|+.++..++...  ..+..     ........++|+|+
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd   87 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence            4567899999997777655556777765544332  12211     02456778999994

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=87.18  E-value=1.8  Score=21.61  Aligned_cols=55  Identities=18%  Similarity=0.126  Sum_probs=35.7

Q ss_pred             ceEEEEECCC---CCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPD---CRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ....+.++|+   +..+++ ...+.++.+++.++.... +.. .......++++++++.++
T Consensus       140 ~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~-~~~-~~~~P~giavd~dG~lyV  197 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDI-KTT-NIGQCADVNFTLNGDMVV  197 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEE-ECC-CCSCEEEEEECTTCCEEE
T ss_pred             CCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEE-eec-CCCCccEEEECCCCCEEE
Confidence            4567888884   444443 333788888887665543 333 345678899999988554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=86.95  E-value=1.8  Score=21.51  Aligned_cols=55  Identities=13%  Similarity=0.137  Sum_probs=32.9

Q ss_pred             ceEEEEECC-CCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061           7 YGLHCVFSP-DCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         7 ~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      ....+.++| +...+......+.++.+++...... .+.. .......++++++++.+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~-~~~~P~~ia~d~~G~~l  193 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYS-GLSKVRTICWTHEADSM  193 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEEC-CCSCEEEEEECTTSSEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEec-CCCCcceEEEeCCCCEE
Confidence            345677886 3333333333367777787655433 3333 34567889999988743

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=86.81  E-value=1.8  Score=21.21  Aligned_cols=53  Identities=13%  Similarity=0.066  Sum_probs=35.3

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCce--EEEee---ccCCCcEeEEEEccC
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSL--VRELG---TANQRWVWDAAFTLD   59 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~v~~~~~~~~   59 (65)
                      ....+.|.|++..+++....+.|+.++...+..  +..+.   .........++++|+
T Consensus        33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pd   90 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPD   90 (347)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred             CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccc
Confidence            456788999999877766578888887654443  21111   113567788999985

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=86.12  E-value=1.7  Score=20.47  Aligned_cols=53  Identities=9%  Similarity=0.016  Sum_probs=36.5

Q ss_pred             EEECCCCCEEEEecCCCcEEEEECCCCceEEEeecc-----------CCCcEeEEEEccCCcEEe
Q psy7061          11 CVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTA-----------NQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~i~   64 (65)
                      +.|. +++..+.......+.+.|..+++.+..+...           .....+.+||+|+.+.++
T Consensus       177 Le~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lf  240 (262)
T 3nol_A          177 LEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLF  240 (262)
T ss_dssp             EEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEE
T ss_pred             eEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEE
Confidence            5554 5666666666788888899998887776531           013458899999876653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=86.04  E-value=2.4  Score=22.01  Aligned_cols=48  Identities=8%  Similarity=0.037  Sum_probs=29.5

Q ss_pred             CCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          17 CRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +..+..++.++.++.++.++++.+-.+.......-.-+.+..+++.++
T Consensus       475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv  522 (571)
T 2ad6_A          475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence            445666778899999999999887776641111112233445665543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=85.76  E-value=2.7  Score=22.29  Aligned_cols=30  Identities=7%  Similarity=0.096  Sum_probs=24.3

Q ss_pred             CCCEEEEecCCCcEEEEECCCCceEEEeec
Q psy7061          16 DCRLLATTSADQTARIWNTEDFSLVRELGT   45 (65)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   45 (65)
                      .+..++.+..++.++.++.++++.+..+..
T Consensus       468 ~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          468 AGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCEEEEECCcccchhhhhhcChhheEecC
Confidence            455677788899999999999988877764

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=84.84  E-value=2.8  Score=21.70  Aligned_cols=54  Identities=9%  Similarity=0.152  Sum_probs=33.1

Q ss_pred             EEEEECC-CCCEEEEecCCCcEEEEECC-------CCce-----------EEE-eeccCCCcEeEEEEccCCcE
Q psy7061           9 LHCVFSP-DCRLLATTSADQTARIWNTE-------DFSL-----------VRE-LGTANQRWVWDAAFTLDSKF   62 (65)
Q Consensus         9 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~-----------~~~-~~~~~~~~v~~~~~~~~~~~   62 (65)
                      ..+..+| ++.++++-...+.++.++++       ++..           ... ........-..++|+|+++.
T Consensus       250 ~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~  323 (496)
T 3kya_A          250 NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKY  323 (496)
T ss_dssp             CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSE
T ss_pred             eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCE
Confidence            3556777 45666666777888888876       3332           112 11112344578999999984

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=83.91  E-value=3.8  Score=22.49  Aligned_cols=29  Identities=21%  Similarity=0.526  Sum_probs=24.0

Q ss_pred             CCCEEEEecCCCcEEEEECCCCceEEEee
Q psy7061          16 DCRLLATTSADQTARIWNTEDFSLVRELG   44 (65)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   44 (65)
                      +...+++-+.++.+++|++.++..+....
T Consensus       230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~D  258 (729)
T 3f7f_A          230 HERYLIVLTQNCHLKIWDLTSFTLIQDYD  258 (729)
T ss_dssp             TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence            46788999999999999999988665544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=83.86  E-value=2.3  Score=19.89  Aligned_cols=56  Identities=9%  Similarity=0.010  Sum_probs=31.3

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCc------eEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFS------LVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+..+.|+|++.+.+.  .++.++..+..+..      .-..+....-.....+.|.|++.+++
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYa  103 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYA  103 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEE
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEE
Confidence            4568999999987666  55666665554311      11122110112246677777777664

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=82.82  E-value=2.8  Score=20.23  Aligned_cols=51  Identities=24%  Similarity=0.279  Sum_probs=31.0

Q ss_pred             ceEEEEECCCCC-EEEEecCCCcEEEEECCCCceEEEee------ccCCCcEeEEEEccC
Q psy7061           7 YGLHCVFSPDCR-LLATTSADQTARIWNTEDFSLVRELG------TANQRWVWDAAFTLD   59 (65)
Q Consensus         7 ~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~   59 (65)
                      ....+.|.|+++ .+++ ...+.|++++.+ +.....+.      .........++++|+
T Consensus        19 ~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pd   76 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPD   76 (353)
T ss_dssp             SEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred             CcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCC
Confidence            456788999998 6655 456888888753 22111111      112346688999984

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=80.13  E-value=3.3  Score=19.32  Aligned_cols=58  Identities=9%  Similarity=0.070  Sum_probs=36.9

Q ss_pred             cceEEEEECCC-CCEEEEecCCCcEEEEECCCCceEEEeec--cC------CCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPD-CRLLATTSADQTARIWNTEDFSLVRELGT--AN------QRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~v~~~~~~~~~~~i~   64 (65)
                      .++..+.++|. +++++.+.....+..++.+. +.+..+.-  ..      -..--.+++.++|+.++
T Consensus       173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI  239 (255)
T 3qqz_A          173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI  239 (255)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE
T ss_pred             CCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE
Confidence            35678889885 45667777778888888663 33333221  00      12446889999988765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	65
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.002
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.003
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.002
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.001
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.004

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 8e-09
 Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 4   HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL 63
           H +  L   F+   +   +T  D     W T   + + +   ++   V     ++D K++
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS--SVLSCDISVDDKYI 321

Query: 64  LT 65
           +T
Sbjct: 322 VT 323

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 4e-04
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 3   AHRAYGLHCVFSPDCRLLATTSADQTARIWN 33
              +  L C  S D + + T S D+ A ++ 
Sbjct: 304 KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (76), Expect = 4e-04
 Identities = 7/65 (10%), Positives = 16/65 (24%), Gaps = 5/65 (7%)

Query: 4   HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQR----WVWDAAFTLD 59
           H         S   R + T       ++W+         +   +      ++       D
Sbjct: 50  HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108

Query: 60  SKFLL 64
              L+
Sbjct: 109 GCTLI 113

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (105), Expect = 5e-08
 Identities = 11/65 (16%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
           +  H  +    +F    + + + + D+T R+W+ ++   ++ L  A++ +V    F   +
Sbjct: 243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAHEHFVTSLDFHKTA 301

Query: 61  KFLLT 65
            +++T
Sbjct: 302 PYVVT 306

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 7e-06
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 3  AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWD 53
           HR+     +F P   ++ + S D T ++W+ E     R L   +   V D
Sbjct: 15 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQD 64

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.2 bits (74), Expect = 8e-04
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIW 32
           + AH  +     F      + T S DQT ++W
Sbjct: 285 LNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.6 bits (101), Expect = 2e-07
 Identities = 12/56 (21%), Positives = 16/56 (28%), Gaps = 1/56 (1%)

Query: 10  HCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT 65
              FS   RLL     D    +W+         L   +   V     T D   + T
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL-AGHDNRVSCLGVTDDGMAVAT 329

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.5 bits (80), Expect = 1e-04
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIWN 33
           +A H         + D   +AT S D   +IWN
Sbjct: 308 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 32.4 bits (72), Expect = 0.002
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 4   HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL 63
           H A      +  D RLL + S D    IW++   + V  +      WV   A+     ++
Sbjct: 54  HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAPSGNYV 112

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 1e-06
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 3  AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL--GTANQRWVWDAAFTLDS 60
          A + Y       P   LL  TS D +  ++  +  +   +L      +  +    F  ++
Sbjct: 9  APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

Query: 61 KFLL 64
             +
Sbjct: 69 DLQI 72

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 5e-05
 Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 2/62 (3%)

Query: 4   HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL 63
                    FSP  + L T  +D     WN +    ++     N+  V           L
Sbjct: 250 LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVV--KIACSDNIL 307

Query: 64  LT 65
             
Sbjct: 308 CL 309

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.1 bits (94), Expect = 1e-06
 Identities = 7/53 (13%), Positives = 13/53 (24%)

Query: 4  HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAF 56
          H         S D + L +  A+     W+       R     +   +     
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 32.3 bits (71), Expect = 0.002
 Identities = 6/31 (19%), Positives = 12/31 (38%)

Query: 3   AHRAYGLHCVFSPDCRLLATTSADQTARIWN 33
           AH    ++ V   +   + +   D   + WN
Sbjct: 266 AHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.3 bits (92), Expect = 2e-06
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 4   HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL 63
           H        +SPD   +A+ SAD+T +IWN     + + +    +            + L
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 296

Query: 64  LT 65
           ++
Sbjct: 297 VS 298

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.2 bits (92), Expect = 2e-06
 Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 3/57 (5%)

Query: 11 CVFSPDCRLLATTSADQTARIWN--TEDFSLVRELGTANQRWVWDAAFTLDSKFLLT 65
            ++ D   +A    +    I+      +  V EL   +   V    +  DS  ++T
Sbjct: 13 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPDSNRIVT 68

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 7e-06
 Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 11 CVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD 59
                   + + S D T ++W+      +R L   +   VW +    +
Sbjct: 21 TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRDN 68

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.7 bits (70), Expect = 0.003
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 10  HCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGT----ANQRWVWDAAFTLDSKFLLT 65
                 +   + T+S D T ++W+ +    +R L T     +   VW    +        
Sbjct: 263 VTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV 322

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 7e-06
 Identities = 6/53 (11%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 11 CVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL 63
               +   + T + D+  R++++ +   + +L + +   VW   +      +
Sbjct: 17 TCLQFEDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAHGGILV 68

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 32.6 bits (72), Expect = 0.002
 Identities = 6/54 (11%), Positives = 14/54 (25%)

Query: 10  HCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL 63
                     +  + ++    I+N     LV      +   +W   F   +   
Sbjct: 286 AITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVA 339

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 8e-06
 Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 9   LHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF 62
           L    + +   + + S D+    W+ +  + +  L   ++  V   A    S  
Sbjct: 312 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML-QGHRNSVISVAVANGSSL 364

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 32.8 bits (73), Expect = 0.001
 Identities = 13/76 (17%), Positives = 34/76 (44%), Gaps = 11/76 (14%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTA-----------NQR 49
              H+      VF+ D + + + S D++ ++WN ++ +   +  T            ++ 
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309

Query: 50  WVWDAAFTLDSKFLLT 65
           +V   A T + +++L+
Sbjct: 310 FVLSVATTQNDEYILS 325

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 32.1 bits (71), Expect = 0.002
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 6   AYGLHCVFSPDCRLLATTSADQTARIWNTE 35
           A        P+  + AT S D  ARIW  +
Sbjct: 357 AVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.0 bits (84), Expect = 4e-05
 Identities = 3/52 (5%), Positives = 14/52 (26%)

Query: 13 FSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL 64
                 +  T+      + +    ++ +     ++     A    D++   
Sbjct: 4  LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAY 55

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 34.7 bits (78), Expect = 2e-04
 Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 2/40 (5%)

Query: 4   HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL 43
           H  Y +   F      L          ++N +    V+ +
Sbjct: 292 HTYYCV--AFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 329

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 35.6 bits (80), Expect = 1e-04
 Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 3/59 (5%)

Query: 4   HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVREL---GTANQRWVWDAAFTLD 59
                     S D   +    A      ++ E      ++   G A+        FT D
Sbjct: 278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTRD 336

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 3e-04
 Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 13 FSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAF 56
             D + + +   D T +IW+       R L T +   V    +
Sbjct: 21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQY 63

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 34.4 bits (78), Expect = 3e-04
 Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 4/59 (6%)

Query: 10  HCVFSPDCRLLATTSADQTARIW--NTEDFSLVREL--GTANQRWVWDAAFTLDSKFLL 64
               S   R L     D    +     ++ + V E+  G+  +          + K+ +
Sbjct: 66  ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI 124

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 32.8 bits (73), Expect = 0.001
 Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 2/64 (3%)

Query: 1   MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS 60
           +A HRA     +           +A +   + + +    + +        +     + D 
Sbjct: 254 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM--GHEIDSINVSQDE 311

Query: 61  KFLL 64
           K LL
Sbjct: 312 KPLL 315

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 31.4 bits (69), Expect = 0.004
 Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 1/56 (1%)

Query: 10  HCVFSPDCRLLATTSADQTARIWNTEDFSLVREL-GTANQRWVWDAAFTLDSKFLL 64
             +   D +  AT  AD T R+W+      V++      Q               +
Sbjct: 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 311

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	65
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.78
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.75
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.74
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.66
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.65
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.62
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.61
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.59
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.59
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.56
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.56
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.55
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.55
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.53
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.52
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.51
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.47
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.46
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.43
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.41
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.36
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.36
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.34
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.32
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.29
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.27
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.15
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.13
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.1
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.08
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.02
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.96
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.94
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.76
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	98.69
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.68
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.64
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.53
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.48
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.47
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.46
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.4
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.36
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.34
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.34
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.33
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.08
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.07
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.94
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.77
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.72
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.64
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.62
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.49
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.47
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.35
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.3
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.28
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.11
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	96.53
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	96.16
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	96.03
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	96.01
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.88
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	95.65
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	95.42
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	94.96
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	94.42
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	91.32
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.94
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.74
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	90.61
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	90.15
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	89.5
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	89.44
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	88.8
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	86.46

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=2.6e-18  Score=76.62  Aligned_cols=64  Identities=22%  Similarity=0.389  Sum_probs=59.5

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |+||.+.|.+++|+|+++++++++.|+.+++|++.+++.+..+.. |...|.+++|+|++.++++
T Consensus        51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~  114 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGNYVAC  114 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEEC-SCSCEEEEEECTTSSEEEE
T ss_pred             ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEec-ccccEEeeEeeccceeeee
Confidence            568999999999999999999999999999999999999888888 8999999999999998763

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=8.2e-18  Score=74.14  Aligned_cols=63  Identities=25%  Similarity=0.429  Sum_probs=58.7

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      |++|.+.|.+++|+|+++.+++++.|+.+++|++.+++.+..+.. |...|.+++|+|++..++
T Consensus        13 L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~~   75 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLA   75 (317)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEE
T ss_pred             EcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeC-CCCcEEEEeeeccccccc
Confidence            468999999999999999999999999999999999999888888 899999999999998875

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.74  E-value=2.1e-17  Score=73.22  Aligned_cols=64  Identities=13%  Similarity=0.051  Sum_probs=57.4

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +.||...|.+++|+|+++.+++++.|+.+++|++.+++....+...|...|.+++|+|+++.++
T Consensus         8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~   71 (299)
T d1nr0a2           8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT   71 (299)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEE
T ss_pred             cCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeec
Confidence            4689999999999999999999999999999999998888777544789999999999998764

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=4.4e-16  Score=68.56  Aligned_cols=63  Identities=16%  Similarity=0.414  Sum_probs=57.6

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...+..+.|+|+++.+++++.++.+++|++.+++.+..+.. |...|.+++|+|++++++|
T Consensus       244 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-h~~~V~~~~~s~~~~~l~s  306 (317)
T d1vyhc1         244 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA-HEHFVTSLDFHKTAPYVVT  306 (317)
T ss_dssp             ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC-CSSCEEEEEECSSSSCEEE
T ss_pred             eCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCEEEE
Confidence            35778899999999999999999999999999999999989988 8999999999999988874

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.65  E-value=1.7e-15  Score=68.00  Aligned_cols=63  Identities=19%  Similarity=0.208  Sum_probs=54.4

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceE--EEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLV--RELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...|.+++|+|+++++++++.|+.+++|++......  ..+.. |...|.+++|+|+++.+++
T Consensus        55 ~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~d~~~l~~  119 (311)
T d1nr0a1          55 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV-FSGPVKDISWDSESKRIAA  119 (311)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEEC-SSSCEEEEEECTTSCEEEE
T ss_pred             cCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccccc-ccCcccccccccccccccc
Confidence            478899999999999999999999999999999876543  34556 7899999999999988763

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=5e-15  Score=67.91  Aligned_cols=64  Identities=22%  Similarity=0.268  Sum_probs=53.9

Q ss_pred             CccccceEEEEECCCCCEEEEecCCC---cEEEEECCCCceEEEeec------------cCCCcEeEEEEccCCcEEeC
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQ---TARIWNTEDFSLVRELGT------------ANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+|...|.+++|+|+++.+++++.|+   .+++|++.++..+..+..            .|...|.+++|+|++++++|
T Consensus       228 ~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S  306 (393)
T d1sq9a_         228 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS  306 (393)
T ss_dssp             -CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred             ccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEE
Confidence            46888999999999999999998876   489999998877666541            28899999999999999875

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.61  E-value=1.5e-14  Score=64.42  Aligned_cols=61  Identities=20%  Similarity=0.104  Sum_probs=55.9

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +...+..+.|+|+++.+++++.++.+++|++.+++.+..+.+ |...|.+++|+|++++++|
T Consensus       269 ~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-H~~~V~~l~~s~d~~~l~s  329 (340)
T d1tbga_         269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG-HDNRVSCLGVTDDGMAVAT  329 (340)
T ss_dssp             CCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSCEEE
T ss_pred             ccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEeCCCCEEEE
Confidence            455689999999999999999999999999999999999988 8999999999999998874

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=2.3e-15  Score=69.03  Aligned_cols=62  Identities=16%  Similarity=0.171  Sum_probs=52.4

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEe----EEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVW----DAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~i~   64 (65)
                      .+|.+.|.+++|+|+++++++++.|+.+++|++++++.+..+.+ |...|.    .++|+|++..++
T Consensus       286 ~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~g-H~~~v~~~~~~~~~~~~~~~~~  351 (393)
T d1sq9a_         286 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNM-HCDDIEIEEDILAVDEHGDSLA  351 (393)
T ss_dssp             BSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CGGGCSSGGGCCCBCTTSCBCS
T ss_pred             ecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECC-cCCcccCCccEEEECCCCCEEE
Confidence            47999999999999999999999999999999999999999988 766654    466677665543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.59  E-value=1e-14  Score=66.52  Aligned_cols=64  Identities=14%  Similarity=0.193  Sum_probs=53.8

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEE--eeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRE--LGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |++|.+.|.+++|+|+++++++++.|+.+++|++..+.....  +.. +...+.+++|+|+++.+++
T Consensus        47 l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~l~~  112 (371)
T d1k8kc_          47 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR-INRAARCVRWAPNEKKFAV  112 (371)
T ss_dssp             EECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCC-CSSCEEEEEECTTSSEEEE
T ss_pred             ecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccc-cccccccccccccccccee
Confidence            357899999999999999999999999999999986654333  344 7889999999999998763

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=1.2e-14  Score=64.35  Aligned_cols=63  Identities=14%  Similarity=0.045  Sum_probs=50.5

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceE---EEeeccCCCcEeEEEEccCCc-EEe
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLV---RELGTANQRWVWDAAFTLDSK-FLL   64 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~-~i~   64 (65)
                      +++|...|.+++|+|++++|++++.|+.+++|+++.....   ..... |...|.+++|+|++. .++
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~-h~~~V~~v~f~~~~~~~l~   73 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDLQIY   73 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE-CSSCEEEEEEEESSSEEEE
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecC-CCCCEEEEEEeCCCCCEEE
Confidence            3579999999999999999999999999999998754332   22334 889999999998754 443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=3e-14  Score=64.64  Aligned_cols=62  Identities=31%  Similarity=0.434  Sum_probs=51.5

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeec-----------------cCCCcEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGT-----------------ANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +|.+.|.+++|+|+|+++++++ |+.+++|++.++..+..+..                 .+...|.+++|+|+++++++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            5889999999999999998876 88999999998877665532                 14566899999999998864

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1e-13  Score=62.46  Aligned_cols=61  Identities=18%  Similarity=0.249  Sum_probs=54.6

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .|...|..+.|+|+++.+++++.|+.+++|+..++..+....  |...|.+++|+|++++|++
T Consensus       263 ~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~t  323 (337)
T d1gxra_         263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISVDDKYIVT  323 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSCEEEE
T ss_pred             ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc--CCCCEEEEEEeCCCCEEEE
Confidence            477889999999999999999999999999999988887665  6789999999999998874

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=1.9e-14  Score=64.14  Aligned_cols=59  Identities=14%  Similarity=0.268  Sum_probs=50.6

Q ss_pred             CCccccce-EEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcE
Q psy7061           1 MAAHRAYG-LHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF   62 (65)
Q Consensus         1 l~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   62 (65)
                      |++|...| .++.+  +++++++++.|+.+++|++.+++.+..+.+ |...|.+++|+|++..
T Consensus         8 L~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~-H~~~V~~l~~s~~~~l   67 (355)
T d1nexb2           8 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSG-HDGGVWALKYAHGGIL   67 (355)
T ss_dssp             EECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEEC-CSSCEEEEEEETTTEE
T ss_pred             ECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEEC-CCCCEEEEEEcCCCEE
Confidence            56898876 45555  678999999999999999999999999998 9999999999997643

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.4e-14  Score=63.58  Aligned_cols=57  Identities=16%  Similarity=0.249  Sum_probs=49.6

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccC
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD   59 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   59 (65)
                      |++|.+.|.. +++++++++++++.|+.+++|++.+++.+..+.. |...|.+++|+|+
T Consensus        12 l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~-h~~~V~~v~~~~~   68 (342)
T d2ovrb2          12 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQMRDN   68 (342)
T ss_dssp             EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCC-CSSCEEEEEEETT
T ss_pred             ECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeC-CCCCEEEEEeCCC
Confidence            4689998865 3555789999999999999999999999999988 8999999999875

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.52  E-value=2.4e-13  Score=61.00  Aligned_cols=64  Identities=16%  Similarity=0.306  Sum_probs=56.4

Q ss_pred             CCccccceEEEEECCCCC-EEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           1 MAAHRAYGLHCVFSPDCR-LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +.+|...|.++.|+|+++ .+++++.++.+++|+.++.+....... |...+.+++|+|+++++++
T Consensus       142 l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~-~~~~i~~v~~~p~~~~l~~  206 (311)
T d1nr0a1         142 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE-HTKFVHSVRYNPDGSLFAS  206 (311)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC-CSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccccccccceeeeccccccccccccccccccccccccc-ccccccccccCcccccccc
Confidence            356888899999999887 478899999999999999988888887 8999999999999998863

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.51  E-value=1.7e-13  Score=62.47  Aligned_cols=62  Identities=16%  Similarity=0.155  Sum_probs=55.9

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+|.+.+..+.|+|+++.+++++.|+.+++|++..+..+..+.. |...|.+++|+|++++++
T Consensus       198 ~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~s~~fs~d~~~la  259 (371)
T d1k8kc_         198 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS-ETLPLLAVTFITESSLVA  259 (371)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC-SSCCEEEEEEEETTEEEE
T ss_pred             cCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeec-ccccceeeeecCCCCEEE
Confidence            35677899999999999999999999999999999988888888 888999999999998775

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=3.3e-13  Score=61.21  Aligned_cols=62  Identities=15%  Similarity=0.206  Sum_probs=54.4

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEE------ccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAF------TLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~i~s   65 (65)
                      .|...+..+.|+|+++.+++++.++.+++|++.+++.+..+.+ |...|.++++      +|++.+++|
T Consensus       306 ~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~-H~~~V~~~~~~~~~~~spd~~~l~s  373 (388)
T d1erja_         306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG-HRNSVISVAVANGSSLGPEYNVFAT  373 (388)
T ss_dssp             CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred             cccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeC-CCCCEEEEEEecCcccCCCCCEEEE
Confidence            3667899999999999999999999999999999999999998 8999998875      567877764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=7.4e-13  Score=58.59  Aligned_cols=60  Identities=15%  Similarity=0.122  Sum_probs=48.5

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +|...+.++.|+|+++.+++++.|+.+++|++++++.+..+..  ......++|+|+++.++
T Consensus       249 ~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~--~~~~~~~~~s~~~~~l~  308 (342)
T d1yfqa_         249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK--FNEDSVVKIACSDNILC  308 (342)
T ss_dssp             SSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC--CSSSEEEEEEECSSEEE
T ss_pred             cccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecC--CCCCEEEEEEeCCCEEE
Confidence            3556788999999999999999999999999999988877764  23344567778887765

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.8e-12  Score=56.48  Aligned_cols=57  Identities=16%  Similarity=0.244  Sum_probs=48.1

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +|...|.++.|  +++.+++++.|+.+++|++.+++.+..+.+ |...|.+++|  ++++++
T Consensus        13 ~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~-H~~~V~~v~~--~~~~l~   69 (293)
T d1p22a2          13 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGSVLCLQY--DERVII   69 (293)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECC-CSSCEEEEEC--CSSEEE
T ss_pred             CCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCCEeeeec--ccceee
Confidence            46667887765  689999999999999999999999999988 8999999887  455655

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6e-12  Score=56.65  Aligned_cols=62  Identities=23%  Similarity=0.311  Sum_probs=52.3

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCC--ceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDF--SLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +|.+.|.+++|+|+++.+++++.++.+++|++...  .....+.. +...+..++|+|++..+++
T Consensus        95 ~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s  158 (337)
T d1gxra_          95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS-SAPACYALAISPDSKVCFS  158 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEEC-SSSCEEEEEECTTSSEEEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccc-ccccccccccccccccccc
Confidence            57788999999999999999999999999998743  44555566 7889999999999988763

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.36  E-value=4.6e-12  Score=55.97  Aligned_cols=62  Identities=16%  Similarity=0.074  Sum_probs=52.0

Q ss_pred             ccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEE---eeccCCCcEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRE---LGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .|...|.++.|+|+++.+++++.++.+++|++.++.....   +.. |...|.+++|+|+++++++
T Consensus       177 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s  241 (299)
T d1nr0a2         177 VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF-HTAKVACVSWSPDNVRLAT  241 (299)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCC-CSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccceEE
Confidence            4677899999999999999999999999999987655433   334 7889999999999998864

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.36  E-value=1.2e-11  Score=55.46  Aligned_cols=62  Identities=6%  Similarity=-0.024  Sum_probs=55.9

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..|...+..+.|+|+++.+++++.++.+++|+...+.....+.. +...+.+++|+|++++++
T Consensus        82 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~la  143 (360)
T d1k32a3          82 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS-REAMITDFTISDNSRFIA  143 (360)
T ss_dssp             CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSSCCCCEEECTTSCEEE
T ss_pred             eCCCceEEeeeecccccccceeccccccccccccccceeeeeec-ccccccchhhccceeeee
Confidence            45778899999999999999999999999999998888877777 788899999999999885

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.34  E-value=9.3e-12  Score=55.80  Aligned_cols=61  Identities=10%  Similarity=0.010  Sum_probs=49.3

Q ss_pred             ccccceEEEEECCCCCEEEEecCC--CcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSAD--QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      +|...+..+.|+|+++.+++++.+  ..+++|+...+... .+.. +...+..++|+|+++++++
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~-~~~~v~~~~~spdg~~l~~  102 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEE-NLGNVFAMGVDRNGKFAVV  102 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCC-CCCSEEEEEECTTSSEEEE
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeC-CCceEEeeeecccccccce
Confidence            477889999999999888766544  37899999877655 4555 7899999999999998863

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=3.3e-11  Score=52.99  Aligned_cols=58  Identities=10%  Similarity=0.011  Sum_probs=48.5

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCc
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK   61 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   61 (65)
                      +...+.++.|+|++.++++++.++.+++|++.++.........|...+.+++|+|.+.
T Consensus       161 ~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~  218 (287)
T d1pgua2         161 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK  218 (287)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-
T ss_pred             cCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeeccccc
Confidence            5678999999999999999999999999999988766543333889999999998764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=4.7e-11  Score=52.49  Aligned_cols=61  Identities=18%  Similarity=0.217  Sum_probs=49.1

Q ss_pred             CccccceEEEEECCC----------CCEEEEecCCCcEEEEECCC-CceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061           2 AAHRAYGLHCVFSPD----------CRLLATTSADQTARIWNTED-FSLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      .+|...|.++.|+|.          +..+++++.|+.+++|+++. ...+..+.. |...|.+++|+|+++.+
T Consensus       202 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~-h~~~V~~v~~~~~~~l~  273 (287)
T d1pgua2         202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA-HKDGVNNLLWETPSTLV  273 (287)
T ss_dssp             CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS-STTCEEEEEEEETTEEE
T ss_pred             cccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCC-CCCCeEEEEECCCCEEE
Confidence            457888999999874          35789999999999999876 445555566 89999999999987644

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.27  E-value=3.4e-11  Score=54.14  Aligned_cols=62  Identities=21%  Similarity=0.314  Sum_probs=48.7

Q ss_pred             ccccceEEEEECCC-CCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEc---cCCcEEeC
Q psy7061           3 AHRAYGLHCVFSPD-CRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFT---LDSKFLLT   65 (65)
Q Consensus         3 ~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~i~s   65 (65)
                      +|...|.+++|+|+ +..+++++.++.+++|+.++++.+..+.. |...+..+.|+   |+++++++
T Consensus       203 ~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~-~~~~v~~~~~s~~~~dg~~l~s  268 (325)
T d1pgua1         203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED-DQEPVQGGIFALSWLDSQKFAT  268 (325)
T ss_dssp             CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB-TTBCCCSCEEEEEESSSSEEEE
T ss_pred             CCCCccEEeeeccccceeccccccccceeeeeeccccccccccc-cccccccceeeeeccCCCEEEE
Confidence            46678999999996 57899999999999999999998888887 66655544444   56666653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=6.2e-10  Score=49.25  Aligned_cols=60  Identities=20%  Similarity=0.297  Sum_probs=47.7

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeec----cCCCcEeEEEEccCCcEEeC
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGT----ANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~i~s   65 (65)
                      |...+..+.++  +..+++++.|+.+++|++++++.+..+..    .|...|.+++|+|++..+++
T Consensus       259 ~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~  322 (342)
T d2ovrb2         259 HQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV  322 (342)
T ss_dssp             CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred             eeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEE
Confidence            45566666664  57889999999999999999988777642    36678999999999887763

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.13  E-value=1.4e-09  Score=48.82  Aligned_cols=63  Identities=17%  Similarity=0.260  Sum_probs=49.7

Q ss_pred             CccccceEEEEECCCCC-EEEEecCCCcEEEEECCCCceEEEeec--cCCCcEeEEEEccC-CcEEe
Q psy7061           2 AAHRAYGLHCVFSPDCR-LLATTSADQTARIWNTEDFSLVRELGT--ANQRWVWDAAFTLD-SKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~i~   64 (65)
                      .+|...+.++.|+|++. .+++++.++.+++|+....+.......  .+...+.+++|+|+ +.+++
T Consensus       156 ~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~  222 (325)
T d1pgua1         156 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI  222 (325)
T ss_dssp             CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEE
T ss_pred             eecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecc
Confidence            56888999999999876 477888999999999987766555443  25678999999997 56655

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.10  E-value=5.4e-11  Score=55.14  Aligned_cols=62  Identities=8%  Similarity=0.116  Sum_probs=47.8

Q ss_pred             CccccceEEEEECCCCCEEEE-------ecCCCcEEEEECCCCceEEEeec--------cCCCcEeEEEEccCCcEE
Q psy7061           2 AAHRAYGLHCVFSPDCRLLAT-------TSADQTARIWNTEDFSLVRELGT--------ANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~i   63 (65)
                      .+|...+..+.|+|+++.++.       +..++.+++|++.+++...++..        .+...+..++|+|+|+++
T Consensus       300 ~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i  376 (426)
T d1hzua2         300 QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEV  376 (426)
T ss_dssp             ECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEE
T ss_pred             ecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEE
Confidence            457778899999999998874       34567899999998765544321        256779999999999976

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.08  E-value=2.6e-10  Score=52.82  Aligned_cols=59  Identities=8%  Similarity=-0.015  Sum_probs=45.5

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEE--Eeec--cCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVR--ELGT--ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+..+.|+|+|+.+++++.++.+++|++.+++...  .+..  .+...+.+++|+|+|++++
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~  124 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTI  124 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEE
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEE
Confidence            357889999999999999999999999998776432  2221  1556677888889999864

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.02  E-value=8.3e-10  Score=49.14  Aligned_cols=54  Identities=6%  Similarity=-0.012  Sum_probs=46.0

Q ss_pred             EEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          11 CVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ++++++++++++++.++.+.+||+.+++.+..+..++......++|+|++++++
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~   55 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAY   55 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEE
Confidence            357888999999999999999999999988887643566788999999999764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.96  E-value=9.7e-10  Score=51.31  Aligned_cols=58  Identities=12%  Similarity=-0.007  Sum_probs=44.2

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCce--EEEeec--cCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSL--VRELGT--ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+..+.|+|+|+.+++++.++.+.+|++.+++.  ...+..  .+...+....|+|+|++++
T Consensus        63 ~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~  124 (432)
T d1qksa2          63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI  124 (432)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEE
T ss_pred             CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEE
Confidence            578899999999999999999999999987653  222221  1456667778889999864

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.94  E-value=2.3e-09  Score=50.09  Aligned_cols=60  Identities=10%  Similarity=-0.004  Sum_probs=47.2

Q ss_pred             ccccceEEEEECCCCCEEEEecC---------CCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           3 AHRAYGLHCVFSPDCRLLATTSA---------DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         3 ~~~~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+...+....|+||+++++....         .+.+.+|++.++... .+.. +...+..+.|+|+|+.++
T Consensus        59 ~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-~l~~-~~~~~~~~~~SPDG~~ia  127 (470)
T d2bgra1          59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEER-IPNNTQWVTWSPVGHKLA  127 (470)
T ss_dssp             TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSC-CCTTEEEEEECSSTTCEE
T ss_pred             hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc-cccc-CCccccccccccCcceee
Confidence            45567889999999998877643         356789999877643 4555 778899999999999886

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=4.1e-09  Score=46.82  Aligned_cols=61  Identities=13%  Similarity=0.046  Sum_probs=43.8

Q ss_pred             cccceEEEEECCCCCEE-EEecCCCcEEEEECCCCceEEEeec--cCCCcEeEEEEccCCcEEe
Q psy7061           4 HRAYGLHCVFSPDCRLL-ATTSADQTARIWNTEDFSLVRELGT--ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~i~   64 (65)
                      +.+.+..+.|+|+|+.+ +++..++.+.+|++...........  ........++|+|++++++
T Consensus        35 ~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~   98 (333)
T d1ri6a_          35 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVF   98 (333)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEE
T ss_pred             CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEe
Confidence            55678899999999987 5555688999999875433222211  1445677899999999875

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.76  E-value=1e-07  Score=42.19  Aligned_cols=58  Identities=16%  Similarity=0.160  Sum_probs=44.9

Q ss_pred             cceEEEEECCCCCEE-EEecCCCcEEEEECCCCceEEEeeccCC-----CcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLL-ATTSADQTARIWNTEDFSLVRELGTANQ-----RWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~i~   64 (65)
                      ..+..+.|+|+|+.+ +++..++.|.+|++.+++.+..... +.     .....++++|+++.++
T Consensus        34 ~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~~~~~~v~~s~dg~~l~   97 (337)
T d1pbyb_          34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL-STPEERVKSLFGAALSPDGKTLA   97 (337)
T ss_dssp             TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC-CBTTEEEECTTCEEECTTSSEEE
T ss_pred             CCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEec-CCCcccccceeeEEEcCCCcEEE
Confidence            446789999999876 5667789999999999988877654 22     3345788999998775

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=1.8e-07  Score=41.42  Aligned_cols=55  Identities=20%  Similarity=0.235  Sum_probs=47.8

Q ss_pred             cccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccC
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD   59 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   59 (65)
                      +...+....+++++..+++++.++.+++|+.+++..+..+.. |...|.+++++++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-h~~~v~~~~~~~~  254 (355)
T d1nexb2         200 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG-HTALVGLLRLSDK  254 (355)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECC-CSSCCCEEEECSS
T ss_pred             cccccccccccccceeeecccccceEEeeecccccccccccc-ccccccccccccc
Confidence            455677888999999999999999999999999999888888 8899999988753

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.68  E-value=5.4e-07  Score=39.37  Aligned_cols=57  Identities=16%  Similarity=0.180  Sum_probs=45.6

Q ss_pred             cceEEEEECCCCCEE-EEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLL-ATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+..+.|+|+++++ +++..++.+.+|++.+++.+..+.. + .....+++++++..++
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~-~-~~~~~~~~~~~~~~~~   89 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA-G-SSPQGVAVSPDGKQVY   89 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-S-SSEEEEEECTTSSEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec-c-cccccccccccccccc
Confidence            346788999999876 5677889999999999988888775 3 4568889999887654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.64  E-value=3.1e-07  Score=40.75  Aligned_cols=60  Identities=12%  Similarity=0.027  Sum_probs=44.8

Q ss_pred             ccceEEEEECCCCCEE-EEecCCCcEEEEECCCCceEEEeeccC-----CCcEeEEEEccCCcEEe
Q psy7061           5 RAYGLHCVFSPDCRLL-ATTSADQTARIWNTEDFSLVRELGTAN-----QRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         5 ~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~i~   64 (65)
                      ...+..+.|+|+++.+ +++..++.+++|++.+++.+..+....     ......++++|++++++
T Consensus        39 ~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~  104 (346)
T d1jmxb_          39 KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY  104 (346)
T ss_dssp             CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEE
T ss_pred             CCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEE
Confidence            3456789999999876 666678999999999988877665411     12346789999998774

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.53  E-value=5.1e-07  Score=42.20  Aligned_cols=45  Identities=11%  Similarity=0.169  Sum_probs=39.3

Q ss_pred             EEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEeC
Q psy7061          19 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      .+++.+.++.+.+||.++++.+..+.. + ..+..++|+|+|+++++
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~-g-~~~~~v~fSpDG~~l~~   78 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDT-G-YAVHISRLSASGRYLFV   78 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEEC-S-SCEEEEEECTTSCEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeC-C-CCeeEEEECCCCCEEEE
Confidence            358888899999999999999999886 4 46999999999999873

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.48  E-value=2e-06  Score=38.82  Aligned_cols=53  Identities=6%  Similarity=-0.190  Sum_probs=41.3

Q ss_pred             ccceEEEEECCCCCE--EEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEcc
Q psy7061           5 RAYGLHCVFSPDCRL--LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL   58 (65)
Q Consensus         5 ~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   58 (65)
                      ...+..+.|+|+|+.  ++++..++.+++||..+++.+..+.. +......+++.+
T Consensus       317 ~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~-~g~~P~~l~~~~  371 (373)
T d2madh_         317 GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVE-LGSGPQVLSVMN  371 (373)
T ss_pred             CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECC-CCCCCcEEEEec
Confidence            345778999999974  46788899999999999999988876 555556665544

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.47  E-value=2.7e-06  Score=37.58  Aligned_cols=55  Identities=5%  Similarity=0.061  Sum_probs=43.1

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+....+++++..+...  ++.+++|++.+++.+....  +...+.+++|+|+|++++
T Consensus       241 ~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dG~~l~  295 (337)
T d1pbyb_         241 VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTVW  295 (337)
T ss_dssp             SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSCEEE
T ss_pred             cceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEE
Confidence            345566778877766554  4789999999998887776  456789999999999875

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.46  E-value=1.4e-06  Score=40.74  Aligned_cols=62  Identities=13%  Similarity=-0.015  Sum_probs=44.2

Q ss_pred             CccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccC-----------------CCcEeEEEEccCCcEEe
Q psy7061           2 AAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTAN-----------------QRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         2 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~i~   64 (65)
                      ..+...+..+.|+|+|+.++.. .+..+++++...+..........                 ......+.|+|+|+.|+
T Consensus       108 ~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia  186 (470)
T d2bgra1         108 ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLA  186 (470)
T ss_dssp             SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEE
T ss_pred             ccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccc
Confidence            3456678899999999988875 46789999988776655433211                 12234577999999986

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.40  E-value=1.9e-06  Score=38.53  Aligned_cols=52  Identities=17%  Similarity=-0.024  Sum_probs=38.0

Q ss_pred             cceEEEEECCCCC--EEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEcc
Q psy7061           6 AYGLHCVFSPDCR--LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL   58 (65)
Q Consensus         6 ~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   58 (65)
                      ..+..+.|+|+++  .++++..++.+++||..+++.+.++.. ....-..+...+
T Consensus       300 ~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~-~G~~p~~i~~~d  353 (355)
T d2bbkh_         300 HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ-LGHGPQVITTAD  353 (355)
T ss_dssp             EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECC-CCSSCCEEECCC
T ss_pred             CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeC-cCCCccEEEeCC
Confidence            3467899999987  356677789999999999999988875 444444444333

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.36  E-value=3.4e-06  Score=38.05  Aligned_cols=58  Identities=7%  Similarity=-0.142  Sum_probs=43.7

Q ss_pred             cccceEEEEECCCCCEEEEec-----CCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           4 HRAYGLHCVFSPDCRLLATTS-----ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +.+.+....++|+++.+....     ....+.+||..+++.+..+.. +..  ..++|+|+|++++
T Consensus        19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~-~~~--~~~a~SpDG~~l~   81 (373)
T d2madh_          19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG-GFL--PNPVAAHSGSEFA   81 (373)
T ss_pred             CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeC-CCC--ccEEEcCCCCEEE
Confidence            556778888999998765542     234688999999998887765 333  3689999999875

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=6.7e-07  Score=39.62  Aligned_cols=45  Identities=13%  Similarity=0.197  Sum_probs=34.0

Q ss_pred             EEEEecCCCcEEEEECCCCceEEEe--eccCCCcEeEEEEccCCcEEe
Q psy7061          19 LLATTSADQTARIWNTEDFSLVREL--GTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .++++..++.+++|+++....+..+  .. +...+..++|+|+|++|+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~-~~~~v~~la~spDG~~L~   52 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVD-VPGQVQPMVVSPDKRYLY   52 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSCCCCEEECTTSSEEE
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEc-CCCCEeEEEEeCCCCEEE
Confidence            3577788999999998754433322  23 678899999999999874

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=6e-06  Score=35.58  Aligned_cols=43  Identities=26%  Similarity=0.437  Sum_probs=34.7

Q ss_pred             CCccccceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeec
Q psy7061           1 MAAHRAYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGT   45 (65)
Q Consensus         1 l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   45 (65)
                      |++|...|.++.|  +++.+++++.|+.+++|++..+........
T Consensus        51 l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~   93 (293)
T d1p22a2          51 LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIH   93 (293)
T ss_dssp             ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECC
T ss_pred             EecCCCCEeeeec--ccceeecccccccccccccccccccccccc
Confidence            3578899998887  568999999999999999987766555443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.33  E-value=7.6e-06  Score=35.67  Aligned_cols=56  Identities=14%  Similarity=-0.016  Sum_probs=42.2

Q ss_pred             ceEEEEECCCCCEEEEec---CCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTS---ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+..+.+++++..+..+.   ..+.+++|+..+++....+..  ...+..++|+|++++++
T Consensus       201 ~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~--~~~~~~va~spdg~~l~  259 (301)
T d1l0qa2         201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV--GPDPAGIAVTPDGKKVY  259 (301)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC--CSSEEEEEECTTSSEEE
T ss_pred             CcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC--CCCEEEEEEeCCCCEEE
Confidence            456778999887654433   346799999999888777664  45689999999998763

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.08  E-value=3.5e-05  Score=33.40  Aligned_cols=57  Identities=19%  Similarity=0.120  Sum_probs=38.8

Q ss_pred             cceEEEEECCCCCEEEEecCC-C--cEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSAD-Q--TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+....|+|||++|+..... .  .+...+...+... .... +........|+|+++.++
T Consensus        39 ~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          39 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVAS-FPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEEC-CSSCEEEEEECTTSSEEE
T ss_pred             CceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEee-eecccccceecCCCCeee
Confidence            456688999999988765433 2  3555555544443 4444 567788899999998875

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.07  E-value=1.7e-05  Score=34.43  Aligned_cols=49  Identities=14%  Similarity=0.079  Sum_probs=36.5

Q ss_pred             ECCC--CCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          13 FSPD--CRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        13 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+|+  |+.++..+ ++.+++.+++.++.. .+.. +.......+|||||+.|+
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~-~~~~~~~p~~SPDG~~ia   56 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVS-NLGVINNARFFPDGRKIA   56 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEEC-SSSEEEEEEECTTSSEEE
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEec-CCCcccCEEECCCCCEEE
Confidence            3577  88776654 456888899877765 4444 567788999999999886

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.94  E-value=5.2e-05  Score=33.84  Aligned_cols=50  Identities=14%  Similarity=0.116  Sum_probs=36.9

Q ss_pred             EECCCCCEEEEec-----CCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          12 VFSPDCRLLATTS-----ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+|+++.+....     ....+++||..+++.+.++.. +..  ..++|+|++++++
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~-g~~--~~~a~SpDg~~l~   62 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG-GFL--PNPVVADDGSFIA   62 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE-CSS--CEEEECTTSSCEE
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEEC-CCC--CceEEcCCCCEEE
Confidence            4578998775543     244699999999998887775 333  3689999999774

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.77  E-value=0.00016  Score=31.29  Aligned_cols=61  Identities=18%  Similarity=0.161  Sum_probs=37.7

Q ss_pred             cccceEEEEECCCCCEEEEecC-CC-----cEEEEECCCCceEEEeec-----cCCCcEeEEEEccCCcEEe
Q psy7061           4 HRAYGLHCVFSPDCRLLATTSA-DQ-----TARIWNTEDFSLVRELGT-----ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         4 ~~~~v~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~i~   64 (65)
                      +.+......|+|||++++.... ++     .+.+++...+........     ..........|+|+++.++
T Consensus        39 ~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~  110 (281)
T d1k32a2          39 NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLII  110 (281)
T ss_dssp             SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEE
T ss_pred             CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEE
Confidence            3455778899999998765432 11     366667666655433221     0123446788999998775

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.72  E-value=5.5e-05  Score=34.31  Aligned_cols=55  Identities=15%  Similarity=0.099  Sum_probs=38.4

Q ss_pred             EEEECCCCCEEEEec----------CCCcEEEEECCCCceEEEeeccC------CCcEeEEEEccCCcEEe
Q psy7061          10 HCVFSPDCRLLATTS----------ADQTARIWNTEDFSLVRELGTAN------QRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        10 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~i~   64 (65)
                      .+.|+|+++.+...+          .++.+.+||..+++....+..+.      ......++|+|++++++
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~  139 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLL  139 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEE
Confidence            577899998766543          35569999999888777664311      12234688999998875

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=0.0003  Score=30.41  Aligned_cols=56  Identities=7%  Similarity=0.071  Sum_probs=34.9

Q ss_pred             cceEEEEECCCCCEEEEecC-CCcEEE--EECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSA-DQTARI--WNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .......|+|+++.++.... .+...+  .+...+..  .... .........|+|+|+.|+
T Consensus       171 ~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~-~~~~~~~p~~SPDG~~i~  229 (269)
T d2hqsa1         171 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLS-STFLDETPSLAPNGTMVI  229 (269)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECC-CSSSCEEEEECTTSSEEE
T ss_pred             ccccccccccccceeEEEeecCCceeeeEeecccccc--eEee-cCccccceEECCCCCEEE
Confidence            34556789999987765544 344444  44443332  3333 345567889999999885

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.62  E-value=0.00038  Score=31.02  Aligned_cols=55  Identities=15%  Similarity=0.073  Sum_probs=41.7

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+..+.+.|+|+.+++...++.|+.++....  ...+.. ....+..+++.++++.++
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~-~~~~~~gla~~~dG~l~v   83 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHAT-VEGKVSGLAFTSNGDLVA   83 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEE-CSSEEEEEEECTTSCEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEc-CCCCcceEEEcCCCCeEE
Confidence            3667899999999888888888888775533  233344 567889999999998775

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.49  E-value=0.00066  Score=30.60  Aligned_cols=54  Identities=11%  Similarity=0.051  Sum_probs=41.0

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061           9 LHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      -.+++..+|+..++....+.|..|+.+.+.....+.. ......+++|.|+++.+
T Consensus       229 dGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~-p~~~~t~~afg~d~~~l  282 (314)
T d1pjxa_         229 DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC-PFEKPSNLHFKPQTKTI  282 (314)
T ss_dssp             EEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC-SSSCEEEEEECTTSSEE
T ss_pred             eeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEEC-CCCCEEEEEEeCCCCEE
Confidence            4567788888877777788899999887766655555 45677899999988644

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.00041  Score=32.94  Aligned_cols=57  Identities=11%  Similarity=-0.018  Sum_probs=36.9

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCc-----------------EeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRW-----------------VWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------v~~~~~~~~~~~i~   64 (65)
                      .+....|+|+|+.++... ++.+++.+...+..+..........                 -..+-|||+|+.|+
T Consensus       115 ~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~ia  188 (465)
T d1xfda1         115 KLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA  188 (465)
T ss_dssp             CCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE
T ss_pred             ccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEE
Confidence            344578999998877655 4667777776665544433211111                 14677999999986

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.35  E-value=0.0005  Score=31.16  Aligned_cols=40  Identities=8%  Similarity=-0.004  Sum_probs=32.3

Q ss_pred             cceEEEEECCCCC--EEEEecCCCcEEEEECCCCceEEEeec
Q psy7061           6 AYGLHCVFSPDCR--LLATTSADQTARIWNTEDFSLVRELGT   45 (65)
Q Consensus         6 ~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   45 (65)
                      ..+..+.|+|+++  .+++...++.+++||..+++.+..+..
T Consensus       314 ~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         314 HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence            3567789999986  346677789999999999998887764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.30  E-value=0.0013  Score=29.68  Aligned_cols=56  Identities=11%  Similarity=0.020  Sum_probs=41.5

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           8 GLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +..+.|.++++.+++-...+.|+.++.+.......... .......++++++++.++
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~-~~~~p~gla~~~dG~l~v   97 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS-HKANPAAIKIHKDGRLFV   97 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC-SSSSEEEEEECTTSCEEE
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeC-CCCCeeEEEECCCCCEEE
Confidence            45778899888777777788888888776655544444 456678899999998765

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.28  E-value=0.00047  Score=32.85  Aligned_cols=55  Identities=9%  Similarity=-0.123  Sum_probs=40.5

Q ss_pred             eEEEEECCCCCEEE-EecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcE
Q psy7061           8 GLHCVFSPDCRLLA-TTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF   62 (65)
Q Consensus         8 v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   62 (65)
                      .......|||+++. ....+..+.++++++.+....+.-+.....+.++++|+++.
T Consensus        74 ~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t  129 (441)
T d1qnia2          74 ISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKT  129 (441)
T ss_dssp             EEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBC
T ss_pred             cceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCE
Confidence            34444567888774 44567889999999888766554335678999999999884

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00092  Score=31.76  Aligned_cols=58  Identities=9%  Similarity=-0.071  Sum_probs=38.1

Q ss_pred             ceEEEEECCCCCEEEEecC---------CCcEEEEECCCCceEEEeec-cCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSA---------DQTARIWNTEDFSLVRELGT-ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+....++|+++.++....         .+...++++.++........ .....+....|+|+|+.++
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~ia  129 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLI  129 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEE
Confidence            4556778999988765432         34577888887665433221 1334566789999998875

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=96.53  E-value=0.0088  Score=27.41  Aligned_cols=57  Identities=11%  Similarity=0.002  Sum_probs=37.3

Q ss_pred             eEEEEECCCCCEEEEecC-CCcEEEEECCC-CceE--EEeec-cCCCcEeEEEEccCCcEEe
Q psy7061           8 GLHCVFSPDCRLLATTSA-DQTARIWNTED-FSLV--RELGT-ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~-~~~~~v~~~~~~~~~~~i~   64 (65)
                      +..+.|+|++++++.... ...+.+|+... +...  ..... ........++|+|+++++.
T Consensus       147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~y  208 (365)
T d1jofa_         147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLY  208 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred             ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEE
Confidence            457899999997766654 45788876553 2221  11111 1356788999999998764

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=96.16  E-value=0.0014  Score=31.28  Aligned_cols=56  Identities=21%  Similarity=0.286  Sum_probs=39.9

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEECCC---------C-ceEEEe-----eccCCCcEeEEEEccCCcEEeC
Q psy7061           9 LHCVFSPDCRLLATTSADQTARIWNTED---------F-SLVREL-----GTANQRWVWDAAFTLDSKFLLT   65 (65)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~-----~~~~~~~v~~~~~~~~~~~i~s   65 (65)
                      ....|.+++..+.+..-+..+..|++..         . ..+..+     .+ |...+....++|+|+++++
T Consensus       315 lh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~G-H~~~~~~~t~~pdGk~l~s  385 (441)
T d1qnia2         315 LHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPG-HNHASLTESRDADGKWLVV  385 (441)
T ss_dssp             EEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCCCEEEE
T ss_pred             ccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCC-CCccccccccCCCCcEEEe
Confidence            4467999888888888999999999741         1 122222     23 5666667788999999974

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=96.03  E-value=0.019  Score=26.28  Aligned_cols=58  Identities=12%  Similarity=0.068  Sum_probs=37.8

Q ss_pred             ceEEEEECCCCCEE-EEecCCCcEEEEECCCCceE--EEeec----------------cCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLL-ATTSADQTARIWNTEDFSLV--RELGT----------------ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~----------------~~~~~v~~~~~~~~~~~i~   64 (65)
                      ....+.|+|+++.+ ++...++.|.+|+.+.....  .....                ........+.++|++++++
T Consensus       194 gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ly  270 (365)
T d1jofa_         194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF  270 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred             ceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEE
Confidence            46678999999866 55556788999988754321  11110                0123456788999999875

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.01  E-value=0.016  Score=25.17  Aligned_cols=57  Identities=11%  Similarity=-0.010  Sum_probs=37.8

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ....+.+.++++.+++......+..++.+.......... .-.....+++.++++.++
T Consensus       141 ~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~-~~~~p~gi~~d~~g~l~v  197 (260)
T d1rwia_         141 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT-DITAPWGIAVDEAGTVYV  197 (260)
T ss_dssp             SCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS-SCCSEEEEEECTTCCEEE
T ss_pred             CcceeeecCCCCEeeeccccccccccccccceeeeeecc-ccCCCccceeeeeeeeee
Confidence            345677888888777777778888888765443322222 335567788888877665

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.88  E-value=0.026  Score=26.47  Aligned_cols=56  Identities=20%  Similarity=0.081  Sum_probs=35.0

Q ss_pred             ceEEEEECCCCCEEEE-ecCC----CcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           7 YGLHCVFSPDCRLLAT-TSAD----QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .+....++|+++.++. -+.+    ..++++++.+++.+.....  ......++|.++++.++
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~--~~~~~~~~W~~D~~~~~  186 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTHDGKGMF  186 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECTTSSEEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc--cccccceEEcCCCCEEE
Confidence            3456678999987643 2222    3588999998886643322  11225677888877653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.65  E-value=0.024  Score=24.59  Aligned_cols=58  Identities=7%  Similarity=-0.088  Sum_probs=38.0

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      .....+.+.++++.+++....+.+..++...... .......-.....+++++++..++
T Consensus       182 ~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~~g~l~v  239 (260)
T d1rwia_         182 TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTVYV  239 (260)
T ss_dssp             CSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCCCSCCCEEEEEECTTCCEEE
T ss_pred             CCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEccCCCCCeEEEEEeCCCCEEE
Confidence            3456788888888877777777787777654332 222221224567899999887665

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=95.42  E-value=0.034  Score=24.67  Aligned_cols=59  Identities=12%  Similarity=0.052  Sum_probs=37.6

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCC--CceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTED--FSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      ..+..+.+.++++.+++...++.+..++...  +................+++.++++.++
T Consensus        68 ~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v  128 (302)
T d2p4oa1          68 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLT  128 (302)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEE
T ss_pred             CCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEe
Confidence            4577889999999888877777777665542  2222221111345567788888877654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.96  E-value=0.048  Score=23.90  Aligned_cols=58  Identities=17%  Similarity=0.288  Sum_probs=39.0

Q ss_pred             cceEEEEECCCCCEEEEec-CCCcEEEEECCCCceEEEeecc-CCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTS-ADQTARIWNTEDFSLVRELGTA-NQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~i~   64 (65)
                      .....+++.++++.+++-. .+..+.+|+. +++.+..+... .......+++.|++..++
T Consensus       200 ~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V  259 (279)
T d1q7fa_         200 NYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVL  259 (279)
T ss_dssp             CSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEE
T ss_pred             cCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEE
Confidence            3467788999998766543 3456888874 46665555431 234578889999988765

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.42  E-value=0.071  Score=23.37  Aligned_cols=58  Identities=10%  Similarity=0.256  Sum_probs=38.1

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeec-cCCCcEeEEEEccCCcEEe
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGT-ANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~i~   64 (65)
                      .....+.+.++++.+++....+.+++|+.. ++.+.++.. ........+++.++++.++
T Consensus       157 ~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~V  215 (279)
T d1q7fa_         157 EFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILI  215 (279)
T ss_dssp             SSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEE
T ss_pred             cccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEE
Confidence            445667788888877777778889998865 454545432 1234456777777776654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.32  E-value=0.41  Score=23.74  Aligned_cols=48  Identities=8%  Similarity=0.061  Sum_probs=31.0

Q ss_pred             CCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061          16 DCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      .+..++.+..++.++.+|..+++.+=++.......-.-+.|..+|+++
T Consensus       483 agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQY  530 (596)
T d1w6sa_         483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY  530 (596)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEE
Confidence            355677788999999999999998876654112111223344466554

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.94  E-value=0.39  Score=22.88  Aligned_cols=54  Identities=20%  Similarity=0.140  Sum_probs=36.7

Q ss_pred             cceEEEEECCCCCEEEEecCCCcEEEEECCCCceEE--Eeec-----cCCCcEeEEEEccC
Q psy7061           6 AYGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVR--ELGT-----ANQRWVWDAAFTLD   59 (65)
Q Consensus         6 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~v~~~~~~~~   59 (65)
                      .....+.|.|+++.+++....+.|++++..++....  .+..     ........++++|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            356689999999988877667888888876554322  2111     12466778898885

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=90.74  E-value=0.46  Score=23.33  Aligned_cols=30  Identities=13%  Similarity=0.046  Sum_probs=24.4

Q ss_pred             CCCEEEEecCCCcEEEEECCCCceEEEeec
Q psy7061          16 DCRLLATTSADQTARIWNTEDFSLVRELGT   45 (65)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   45 (65)
                      .+..++.+..++.++.+|..+++.+-.+..
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence            455677788899999999999998876654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.61  E-value=0.48  Score=23.32  Aligned_cols=48  Identities=10%  Similarity=0.041  Sum_probs=31.5

Q ss_pred             CCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEE
Q psy7061          16 DCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL   63 (65)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i   63 (65)
                      .+..++.++.|+.++.+|..+++.+=++.......-.-+.|..+|+++
T Consensus       496 agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            455677788999999999999998766654111111224555566543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=90.15  E-value=0.38  Score=21.39  Aligned_cols=55  Identities=13%  Similarity=0.035  Sum_probs=38.7

Q ss_pred             ceEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEc-cCCcEE
Q psy7061           7 YGLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFT-LDSKFL   63 (65)
Q Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~i   63 (65)
                      ..-.+.+..+|+..++....+.|..|+. .++.+..+.- ....+++++|- |+.+.|
T Consensus       200 ~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~l-P~~~~T~~~FGG~d~~~L  255 (295)
T d2ghsa1         200 GMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV-PGKQTTCPAFIGPDASRL  255 (295)
T ss_dssp             EEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC-SCSBEEEEEEESTTSCEE
T ss_pred             cccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecC-CCCceEEEEEeCCCCCEE
Confidence            3456777888887777767788988895 4777777765 44568888884 555444

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.50  E-value=0.62  Score=22.93  Aligned_cols=48  Identities=8%  Similarity=0.037  Sum_probs=31.3

Q ss_pred             CCEEEEecCCCcEEEEECCCCceEEEeeccCCCcEeEEEEccCCcEEe
Q psy7061          17 CRLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   64 (65)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~   64 (65)
                      +..++.+..++.++.+|.++++.+=+........-.-+.|..+|++++
T Consensus       475 gglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi  522 (571)
T d2ad6a1         475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence            456777889999999999999987666541122222244455666543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=89.44  E-value=0.46  Score=21.32  Aligned_cols=57  Identities=12%  Similarity=0.078  Sum_probs=32.1

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeeccCC---CcEeEEEEccCCcEEe
Q psy7061           8 GLHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTANQ---RWVWDAAFTLDSKFLL   64 (65)
Q Consensus         8 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~i~   64 (65)
                      ...+.+.+++..+..+.....+...+.+.............   ...+.+++.++|..++
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyv  132 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWI  132 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEE
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEE
Confidence            34678888887665555555667777654332211111011   1346778888887665

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=88.80  E-value=0.52  Score=21.12  Aligned_cols=54  Identities=11%  Similarity=0.091  Sum_probs=37.4

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEECCCCceEEEeecc-----CCCcEeEEEEccCCcEE
Q psy7061           9 LHCVFSPDCRLLATTSADQTARIWNTEDFSLVRELGTA-----NQRWVWDAAFTLDSKFL   63 (65)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~i   63 (65)
                      -.+.+..+|+..++....+.|..++. .++.+..+.-+     +...+.+++|.+....+
T Consensus       231 dGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~  289 (319)
T d2dg1a1         231 DSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQL  289 (319)
T ss_dssp             EEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEE
T ss_pred             eeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEE
Confidence            35677788888887788899999996 47666655431     23356788888766544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=86.46  E-value=1  Score=22.06  Aligned_cols=30  Identities=7%  Similarity=0.096  Sum_probs=24.0

Q ss_pred             CCCEEEEecCCCcEEEEECCCCceEEEeec
Q psy7061          16 DCRLLATTSADQTARIWNTEDFSLVRELGT   45 (65)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   45 (65)
                      .+..++.+..++.++.+|..+++.+=+...
T Consensus       468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence            345667788899999999999998766654