Psyllid ID: psy7086

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
MDNSNSQGNKNAKKPRLRLPNHPMLNLNIPVLSSPDLNKLNFTTPEIEKFIMQNVSSNQTPTPTQVLFSTNIMEEQELMAKSFQDTYNELKNTQVLFSTNIMEEQELMAKSFQDTYNELKNTSDSSIQSKLLKSENSNDTFDMTRCSSNSSSATYTTLDSNLKLEFQPGMDNSNSQGNKNAKKPRLRLPNHPMLNLNIPVLSSPDLNKLNFTTPEIEKFIMQNVSSNQTPTPTQVLFSTNIMEEQELMAKSFQDTYNELKNNTSDSSSMLIKDEPAHSIASTSPPMSPIDMESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHNGCQINVVMSQLSQF
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcc
ccccccccccccccccccccccccccccccccccccHcHHHcccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccHHHHHHHHccc
mdnsnsqgnknakkprlrlpnhpmlnlnipvlsspdlnklnfttpEIEKFIMQNvssnqtptptqvLFSTNIMEEQELMAKSFQDTYNELKNTQVLFSTNIMEEQELMAKSFQDTYNElkntsdssIQSKLlksensndtfdmtrcssnsssatyttldsnlklefqpgmdnsnsqgnknakkprlrlpnhpmlnlnipvlsspdlnklnfttpEIEKFIMQNvssnqtptptqvLFSTNIMEEQELMAKSFQDTYNELknntsdsssmlikdepahsiastsppmspidmeSQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHNGCQINVVMSQLSQF
mdnsnsqgnknakkprlrlpnhpMLNLNIPVLSSPDLNKLNFTTPEIEKFIMQnvssnqtpTPTQVLFSTNIMEEQELMAKSFQDTYNELKNTQVLFSTNIMEEQELMAKSFQDTYNELKntsdssiqskLLKSENSNDTFDMTRCSSNSSSATYTTLDSNLKLEfqpgmdnsnsqgnknaKKPRLRLPNHPMLNLNIPVLSSPDLNKLNFTTPEIEKFIMQnvssnqtpTPTQVLFSTNIMEEQELMAKSFQDTYNELKNNTSDSSSMLIKDEPahsiastsppmspidmESQERIkierkrqrnrvaaskcrkrklerianLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHNGCQINVVMSQLSQF
MDNSNSQGNKNAKKPRLRLPNHPMLNLNIPVLSSPDLNKLNFTTPEIEKFIMQNVSSNQTPTPTQVLFSTNIMEEQELMAKSFQDTYNELKNTQVLFSTNIMEEQELMAKSFQDTYNELKNTSDSSIQSKLLKSENSNDTFDMTRCSSNSSSATYTTLDSNLKLEFQPGMDNSNSQGNKNAKKPRLRLPNHPMLNLNIPVLSSPDLNKLNFTTPEIEKFIMQNVSSNQTPTPTQVLFSTNIMEEQELMAKSFQDTYNELKNNTSDSSSMLIKDEPAHSIASTSPPMSPIDMESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHNGCQINVVMSQLSQF
*************************NLNIPVLS**DLNKLNFTTPEIEKFIM*************VLFSTNI**********FQDTYNELKNTQVLFSTNI*********************************************************************************************NLNIPVL****LNKLNFTTPEIEKFIM**********************************************************************************************************VKIL************KLKQQVCSLKEQVMEHVHNGCQINVVM******
************************************LNKLNFTTPEIE****************************************ELKNT********************************************************************************************************************************************************************************************************************NRVAASKCRKRKLERI*NL************ELASVASKLKQQVCSLKEQVMEHVHNGCQINVVMS*****
*************KPRLRLPNHPMLNLNIPVLSSPDLNKLNFTTPEIEKFIMQNVSSNQTPTPTQVLFSTNIMEEQELMAKSFQDTYNELKNTQVLFSTNIMEEQELMAKSFQDTYNELKNTSDSSIQSKLLKSENSNDTFDMTRCSSNSSSATYTTLDSNLKLEFQPGMDN**********KPRLRLPNHPMLNLNIPVLSSPDLNKLNFTTPEIEKFIMQNVSSNQTPTPTQVLFSTNIMEEQELMAKSFQDTYNELKNNTSDSSSMLIKDEPAHSIASTSPPMSPIDMESQERIKIE**************KRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHNGCQINVVMSQLSQF
**********************PMLNLNIPVLSSPDLNKLNFTTPEIEKFIMQNVSSNQTPTPTQVLFSTNIMEEQELMAKSFQDTYNELKNTQVLFSTNIMEEQELMAKSFQDTYNELKN**********************************************************************PMLNLNIPVLSSP*L*K**F****************************************************************************P*D*ESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHNGCQINVVMSQLSQF
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
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MDNSNSQGNKNAKKPRLRLPNHPMLNLNIPVLSSPDLNKLNFTTPEIEKFIMQNVSSNQTPTPTQVLFSTNIxxxxxxxxxxxxxxxxxxxxxQVLFSTNIxxxxxxxxxxxxxxxxxxxxxSDSSIQSKLLKSENSNDTFDMTRCSSNSSSATYTTLDSNLKLEFQPGMDNSNSQGNKNAKKPRLRLPNHPMLNLNIPVLSSPDLNKLNFTTPEIEKFIMQNVSSNQTPTPTQVLFSTNIxxxxxxxxxxxxxxxxxxxxxTSDSSSMLIKDEPAHSIASTSPPMSPIDMESQERIKIERKRQRNRVAASKCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVCSLKEQVMEHVHNGCQINVVMSQLSQF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query376 2.2.26 [Sep-21-2011]
P18289289 Transcription factor AP-1 yes N/A 0.433 0.564 0.418 2e-33
P54864314 Transcription factor AP-1 N/A N/A 0.279 0.334 0.611 8e-31
P18870314 Transcription factor AP-1 yes N/A 0.279 0.334 0.611 9e-31
P17325334 Transcription factor AP-1 yes N/A 0.279 0.314 0.611 1e-30
P05412331 Transcription factor AP-1 yes N/A 0.279 0.317 0.611 1e-30
P12981313 Transcription factor AP-1 N/A N/A 0.279 0.335 0.611 1e-30
P05627334 Transcription factor AP-1 yes N/A 0.279 0.314 0.611 1e-30
O77627335 Transcription factor AP-1 no N/A 0.279 0.313 0.611 1e-30
P56432331 Transcription factor AP-1 yes N/A 0.279 0.317 0.611 1e-30
P52909341 Transcription factor jun- no N/A 0.220 0.243 0.690 4e-29
>sp|P18289|JRA_DROME Transcription factor AP-1 OS=Drosophila melanogaster GN=Jra PE=1 SV=2 Back     alignment and function desciption
 Score =  143 bits (361), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/208 (41%), Positives = 120/208 (57%), Gaps = 45/208 (21%)

Query: 200 VLSSPDLNKLNFTTPEIEKFIMQNVSSNQTPTPTQVLFSTN---IMEEQELMAKSFQDTY 256
           V++SPDL+     TP++EK ++ N +  QTP P +V F T    +  EQ    + F++  
Sbjct: 79  VINSPDLSSKTVNTPDLEKILLSN-NLMQTPQPGKV-FPTKAGPVTVEQLDFGRGFEEAL 136

Query: 257 NELKNN---------------------------------TSDSSSM-----LIKDEPAHS 278
           + L  N                                 T   ++M     +IKDEP + 
Sbjct: 137 HNLHTNSQAFPSANSAANSAANNTTAAAMTAVNNGISGGTFTYTNMTEGFSVIKDEPVNQ 196

Query: 279 IASTSPPMSPIDMESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNEL 338
             ++SP ++PIDME+QE+IK+ERKRQRNRVAASKCRKRKLERI+ LE+RVK+LKGEN +L
Sbjct: 197 --ASSPTVNPIDMEAQEKIKLERKRQRNRVAASKCRKRKLERISKLEDRVKVLKGENVDL 254

Query: 339 ASVASKLKQQVCSLKEQVMEHVHNGCQI 366
           AS+   LK  V  LK+QVMEH+  GC +
Sbjct: 255 ASIVKNLKDHVAQLKQQVMEHIAAGCTV 282
Transcription factor that recognizes and binds to the enhancer heptamer motif 5'-TGA[CG]TCA-3'.
Drosophila melanogaster (taxid: 7227)
>sp|P54864|JUN_SERCA Transcription factor AP-1 OS=Serinus canaria GN=JUN PE=2 SV=1 Back     alignment and function description
>sp|P18870|JUN_CHICK Transcription factor AP-1 OS=Gallus gallus GN=JUN PE=1 SV=2 Back     alignment and function description
>sp|P17325|JUN_RAT Transcription factor AP-1 OS=Rattus norvegicus GN=Jun PE=1 SV=1 Back     alignment and function description
>sp|P05412|JUN_HUMAN Transcription factor AP-1 OS=Homo sapiens GN=JUN PE=1 SV=2 Back     alignment and function description
>sp|P12981|JUN_COTJA Transcription factor AP-1 OS=Coturnix coturnix japonica GN=JUN PE=2 SV=1 Back     alignment and function description
>sp|P05627|JUN_MOUSE Transcription factor AP-1 OS=Mus musculus GN=Jun PE=1 SV=3 Back     alignment and function description
>sp|O77627|JUN_BOVIN Transcription factor AP-1 OS=Bos taurus GN=JUN PE=2 SV=2 Back     alignment and function description
>sp|P56432|JUN_PIG Transcription factor AP-1 OS=Sus scrofa GN=JUN PE=2 SV=1 Back     alignment and function description
>sp|P52909|JUND_RAT Transcription factor jun-D OS=Rattus norvegicus GN=Jund PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
332028791267 Transcription factor AP-1 [Acromyrmex ec 0.571 0.805 0.480 2e-50
322788548265 hypothetical protein SINV_04578 [Solenop 0.561 0.796 0.480 9e-50
307176797271 Transcription factor AP-1 [Camponotus fl 0.531 0.738 0.493 2e-48
383848745271 PREDICTED: transcription factor AP-1-lik 0.555 0.771 0.481 7e-48
328787983270 PREDICTED: transcription factor AP-1 [Ap 0.510 0.711 0.504 3e-47
307193823277 Transcription factor AP-1 [Harpegnathos 0.542 0.736 0.485 6e-45
388540204257 c-jun-like protein [Helicoverpa armigera 0.454 0.665 0.505 2e-42
351696081249 Transcription factor AP-1 [Heterocephalu 0.569 0.859 0.437 8e-41
193688360272 PREDICTED: transcription factor AP-1-lik 0.489 0.676 0.418 1e-39
345494205277 PREDICTED: transcription factor AP-1-lik 0.569 0.772 0.416 1e-39
>gi|332028791|gb|EGI68820.1| Transcription factor AP-1 [Acromyrmex echinatior] Back     alignment and taxonomy information
 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/262 (48%), Positives = 158/262 (60%), Gaps = 47/262 (17%)

Query: 149 NSSSATYTTLDSNLKLEFQPGMDNSNSQGNKNAKKPRLRLPNHPMLNLNIPVLSSPDLNK 208
           N    +   L  NL L+    ++    QG++ AK+PRL  P  P LN   P+LSSPDLN 
Sbjct: 16  NGRENSVVQLKRNLTLD----LNGCQRQGSQ-AKRPRLG-PLPPALNNVTPILSSPDLNM 69

Query: 209 LNFTTPEIEKFIMQN----VSSNQTPTPTQVLFSTNIMEEQELMAKSFQDTYNELKNNTS 264
           L   +PE+EK IM      V+S  TPT TQ+LF   + E QEL A+ F D  NEL +  S
Sbjct: 70  LKLASPELEKLIMTQPDGLVTSLPTPT-TQILFPKAVTEAQELYARGFVDALNELHH--S 126

Query: 265 DSSS-------------------------------MLIKDEP--AHSIASTSPPMSPIDM 291
           DSS                                + +KDEP    S++ST PPMSPIDM
Sbjct: 127 DSSQEPGSMHGATYTTLEPPGSVQSTESTMSNPGLVHVKDEPQTVPSVSST-PPMSPIDM 185

Query: 292 ESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCS 351
           E+QE+IK+ERKRQRNRVAASKCR+RKLERI+ LE++VK+LKGEN EL+ +  KLK+ VC 
Sbjct: 186 ENQEKIKLERKRQRNRVAASKCRRRKLERISRLEDKVKLLKGENTELSGIVHKLKEHVCR 245

Query: 352 LKEQVMEHVHNGCQINVVMSQL 373
           LKEQVM+HVH GCQI  V +Q 
Sbjct: 246 LKEQVMDHVHAGCQIMTVNNQF 267

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|322788548|gb|EFZ14176.1| hypothetical protein SINV_04578 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307176797|gb|EFN66194.1| Transcription factor AP-1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|383848745|ref|XP_003700008.1| PREDICTED: transcription factor AP-1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|328787983|ref|XP_003251036.1| PREDICTED: transcription factor AP-1 [Apis mellifera] gi|380012313|ref|XP_003690230.1| PREDICTED: transcription factor AP-1-like [Apis florea] Back     alignment and taxonomy information
>gi|307193823|gb|EFN76477.1| Transcription factor AP-1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|388540204|gb|AFK64813.1| c-jun-like protein [Helicoverpa armigera] Back     alignment and taxonomy information
>gi|351696081|gb|EHA98999.1| Transcription factor AP-1 [Heterocephalus glaber] Back     alignment and taxonomy information
>gi|193688360|ref|XP_001947556.1| PREDICTED: transcription factor AP-1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|345494205|ref|XP_003427246.1| PREDICTED: transcription factor AP-1-like [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
UNIPROTKB|E1C766310 JUN "Transcription factor AP-1 0.279 0.338 0.611 6.7e-43
UNIPROTKB|F1NCN0314 JUN "Transcription factor AP-1 0.279 0.334 0.611 6.7e-43
UNIPROTKB|P18870314 JUN "Transcription factor AP-1 0.279 0.334 0.611 3.6e-42
UNIPROTKB|Q08DH1303 JUN "Transcription factor AP-1 0.279 0.346 0.611 3.2e-41
UNIPROTKB|P05412331 JUN "Transcription factor AP-1 0.279 0.317 0.611 5.2e-41
MGI|MGI:96646334 Jun "Jun oncogene" [Mus muscul 0.279 0.314 0.611 5.2e-41
RGD|2943334 Jun "jun proto-oncogene" [Ratt 0.279 0.314 0.611 5.2e-41
UNIPROTKB|O77627335 JUN "Transcription factor AP-1 0.279 0.313 0.611 5.2e-41
UNIPROTKB|K7GRG2335 C-JUN "Uncharacterized protein 0.279 0.313 0.611 5.2e-41
UNIPROTKB|E2R6T4341 JUN "Uncharacterized protein" 0.279 0.307 0.611 5.2e-41
UNIPROTKB|E1C766 JUN "Transcription factor AP-1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 332 (121.9 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
 Identities = 66/108 (61%), Positives = 85/108 (78%)

Query:   271 IKDEP--AHSIASTSPPMSPIDMESQERIKIERKRQRNRVAASKCRKRKLERIANLEERV 328
             +K+EP     +   +PP+SPIDMESQERIK ERKR RNR+AASKCRKRKLERIA LEE+V
Sbjct:   204 LKEEPQTVPEMPGETPPLSPIDMESQERIKAERKRMRNRIAASKCRKRKLERIARLEEKV 263

Query:   329 KILKGENNELASVASKLKQQVCSLKEQVMEHVHNGCQINVVMSQLSQF 376
             K LK +N+ELAS A+ L++QV  LK++VM HV++GCQ+ ++  QL  F
Sbjct:   264 KTLKAQNSELASTANMLREQVAQLKQKVMNHVNSGCQL-MLTQQLQTF 310
GO:0000980 "RNA polymerase II distal enhancer sequence-specific DNA binding" evidence=IEA
GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IEA
GO:0001525 "angiogenesis" evidence=IEA
GO:0001774 "microglial cell activation" evidence=IEA
GO:0001889 "liver development" evidence=IEA
GO:0001938 "positive regulation of endothelial cell proliferation" evidence=IEA
GO:0003151 "outflow tract morphogenesis" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA
GO:0003713 "transcription coactivator activity" evidence=IEA
GO:0005100 "Rho GTPase activator activity" evidence=IEA
GO:0005667 "transcription factor complex" evidence=IEA
GO:0005719 "nuclear euchromatin" evidence=IEA
GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=IEA
GO:0007184 "SMAD protein import into nucleus" evidence=IEA
GO:0008285 "negative regulation of cell proliferation" evidence=IEA
GO:0017053 "transcriptional repressor complex" evidence=IEA
GO:0030224 "monocyte differentiation" evidence=IEA
GO:0031103 "axon regeneration" evidence=IEA
GO:0031953 "negative regulation of protein autophosphorylation" evidence=IEA
GO:0035026 "leading edge cell differentiation" evidence=IEA
GO:0035497 "cAMP response element binding" evidence=IEA
GO:0042493 "response to drug" evidence=IEA
GO:0043392 "negative regulation of DNA binding" evidence=IEA
GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA
GO:0043922 "negative regulation by host of viral transcription" evidence=IEA
GO:0043923 "positive regulation by host of viral transcription" evidence=IEA
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA
GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA
GO:0048146 "positive regulation of fibroblast proliferation" evidence=IEA
GO:0051726 "regulation of cell cycle" evidence=IEA
GO:0060395 "SMAD protein signal transduction" evidence=IEA
GO:0070412 "R-SMAD binding" evidence=IEA
GO:0071277 "cellular response to calcium ion" evidence=IEA
UNIPROTKB|F1NCN0 JUN "Transcription factor AP-1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P18870 JUN "Transcription factor AP-1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q08DH1 JUN "Transcription factor AP-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P05412 JUN "Transcription factor AP-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:96646 Jun "Jun oncogene" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2943 Jun "jun proto-oncogene" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O77627 JUN "Transcription factor AP-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|K7GRG2 C-JUN "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2R6T4 JUN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
pfam0017064 pfam00170, bZIP_1, bZIP transcription factor 5e-16
smart0033865 smart00338, BRLZ, basic region leucin zipper 4e-13
cd1219354 cd12193, B_zip1, basic leucine zipper DNA-binding 2e-12
pfam03957236 pfam03957, Jun, Jun-like transcription factor 2e-09
pfam03957236 pfam03957, Jun, Jun-like transcription factor 4e-09
pfam0771654 pfam07716, bZIP_2, Basic region leucine zipper 6e-06
>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor Back     alignment and domain information 
 Score = 71.6 bits (176), Expect = 5e-16
 Identities = 27/64 (42%), Positives = 39/64 (60%)

Query: 294 QERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLK 353
           ++ +K ER+RQ+NR AA + R RK   I  LEE+VK L+ EN  L S   +LK++   LK
Sbjct: 1   EKELKRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTLRSELERLKKECAKLK 60

Query: 354 EQVM 357
            +  
Sbjct: 61  SENE 64

The Pfam entry includes the basic region and the leucine zipper region. Length = 64
>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper Back     alignment and domain information
>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins Back     alignment and domain information
>gnl|CDD|217814 pfam03957, Jun, Jun-like transcription factor Back     alignment and domain information
>gnl|CDD|217814 pfam03957, Jun, Jun-like transcription factor Back     alignment and domain information
>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 376
KOG0837|consensus279 100.0
PF03957237 Jun: Jun-like transcription factor; InterPro: IPR0 99.95
PF03957237 Jun: Jun-like transcription factor; InterPro: IPR0 99.95
KOG0837|consensus279 99.63
smart0033865 BRLZ basic region leucin zipper. 99.39
PF0017064 bZIP_1: bZIP transcription factor cAMP response el 99.37
KOG3584|consensus348 99.03
PF0771654 bZIP_2: Basic region leucine zipper; InterPro: IPR 99.0
KOG4571|consensus294 98.77
KOG4005|consensus 292 98.56
KOG3119|consensus269 98.43
PF0313192 bZIP_Maf: bZIP Maf transcription factor; InterPro: 98.36
KOG3863|consensus604 98.3
KOG0709|consensus 472 98.29
KOG4343|consensus 655 97.95
KOG1414|consensus395 97.28
KOG4196|consensus135 96.95
KOG1414|consensus 395 96.89
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 89.52
PF08172248 CASP_C: CASP C terminal; InterPro: IPR012955 This 86.38
PF0218345 HALZ: Homeobox associated leucine zipper; InterPro 84.61
TIGR0244965 conserved hypothetical protein TIGR02449. Members 80.19
>KOG0837|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.6e-44  Score=342.85  Aligned_cols=215  Identities=41%  Similarity=0.564  Sum_probs=194.8

Q ss_pred             CccccccccCCCCCCcccccccccccccccCCCCCCCccCCcccCCCCcCCCCCCCccCCCCcccCCCcCCcccCChhhh
Q psy7086         138 NDTFDMTRCSSNSSSATYTTLDSNLKLEFQPGMDNSNSQGNKNAKKPRLRLPNHPMLNLNIPVLSSPDLNKLNFTTPEIE  217 (376)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~k~lK~~mtLnl~~~~~~s~~~~~~~~~K~~l~~~~~~~~~~~~~~L~SpDl~~LKLaSPELE  217 (376)
                      +..+++|++.++. .+.++.+|.+|+|+|.++    +  .   ..|++       ..+.+.+++.++|++.|||+|||||
T Consensus        11 ~~~~~~gssg~~~-~~~p~~~k~~~~l~l~dp----~--~---t~kp~-------~~a~~~~~~~~~D~~~l~l~speLe   73 (279)
T KOG0837|consen   11 LSSPLDGSSGTGE-VSAPKTLKPSMGLNLADP----F--I---TLKPP-------PAAKNFDFFAPQDLGTLKLASPELE   73 (279)
T ss_pred             ccccCCCCCCCcc-cccccccccccccccccc----c--c---ccCCC-------CcCCCcCcccCccccccccCcHHHH
Confidence            4556888888866 999999999999999998    5  3   55554       2356779999999999999999999


Q ss_pred             HHHHhcCCC-CCCCCCcceeccchhhHHHHHHHHHHHHHHHhhhcCCCC---------------------C---------
Q psy7086         218 KFIMQNVSS-NQTPTPTQVLFSTNIMEEQELMAKSFQDTYNELKNNTSD---------------------S---------  266 (376)
Q Consensus       218 rliiq~~G~-ttTPTPsq~~~p~~vt~eqe~~a~gfv~al~~l~~~~~~---------------------~---------  266 (376)
                      |+|+++||. ++||||++|+||++||+||+.|+.|||.|++++|.+|..                     +         
T Consensus        74 ~aiv~sn~~~tttptp~q~~ypk~vt~e~~~fd~gf~~al~dlH~~n~~~~stee~~~~~stg~~~y~p~sv~~~~~~s~  153 (279)
T KOG0837|consen   74 RAIVRSNGYATTTPTPMQYRYPKNVTEEQYFFDPGFVMALDDLHPGNYRYFSTEECQPVHSTGIVGYSPTSVDQEAILSI  153 (279)
T ss_pred             HHHhhccceeeecCCCccccCCCcccchhhhcccchhHhHhhcCccccccccccccccccccCccCcCCccchhhhhhhc
Confidence            999999999 999999999999999999999999999999999999932                     0         


Q ss_pred             -----C-------------Cc-ccccCCCCCCCC--CCCCCCCCCcchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy7086         267 -----S-------------SM-LIKDEPAHSIAS--TSPPMSPIDMESQERIKIERKRQRNRVAASKCRKRKLERIANLE  325 (376)
Q Consensus       267 -----~-------------~~-~ikeEPq~vp~~--~spp~sPiD~eeqE~iKreRRReRNRvAAsKCRqRKKe~I~~LE  325 (376)
                           +             +. ..++||++++..  .++|.+||||+.||++|.+|+|.|||+||.|||+||.++|++||
T Consensus       154 ~gk~~~~~~a~~~~~~g~~r~e~~~~e~~~v~e~~~~~~pispid~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLE  233 (279)
T KOG0837|consen  154 GGKEGSRFAAKKSREVGMTRKELEKDEPQTVAEIPELKEPISPIDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLE  233 (279)
T ss_pred             cCCCCceeccccccccccchHHHhhccchhhccCcccCCCCCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence                 0             11 567899999984  58999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccc
Q psy7086         326 ERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHNGCQINVV  369 (376)
Q Consensus       326 ~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~~gC~l~~~  369 (376)
                      ++|+.++.+|.+|..++..|+++|.++|+.|++|.++||+++..
T Consensus       234 dkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi~ngc~~ll~  277 (279)
T KOG0837|consen  234 DKVKTLKIYNRDLASELSKLKEQVAELKQKVMEHIHNGCQLLLE  277 (279)
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            99999999999999999999999999999999999999999864

>PF03957 Jun: Jun-like transcription factor; InterPro: IPR005643 The c-Jun NH(2)-terminal kinase (JNK) is a member of an evolutionarily conserved sub-family of mitogen-activated protein (MAP) kinases [, ] Back     alignment and domain information
>PF03957 Jun: Jun-like transcription factor; InterPro: IPR005643 The c-Jun NH(2)-terminal kinase (JNK) is a member of an evolutionarily conserved sub-family of mitogen-activated protein (MAP) kinases [, ] Back     alignment and domain information
>KOG0837|consensus Back     alignment and domain information
>smart00338 BRLZ basic region leucin zipper Back     alignment and domain information
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization Back     alignment and domain information
>KOG3584|consensus Back     alignment and domain information
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization Back     alignment and domain information
>KOG4571|consensus Back     alignment and domain information
>KOG4005|consensus Back     alignment and domain information
>KOG3119|consensus Back     alignment and domain information
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell Back     alignment and domain information
>KOG3863|consensus Back     alignment and domain information
>KOG0709|consensus Back     alignment and domain information
>KOG4343|consensus Back     alignment and domain information
>KOG1414|consensus Back     alignment and domain information
>KOG4196|consensus Back     alignment and domain information
>KOG1414|consensus Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins Back     alignment and domain information
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox [] Back     alignment and domain information
>TIGR02449 conserved hypothetical protein TIGR02449 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
1jnm_A62 Crystal Structure Of The JunCRE COMPLEX Length = 62 3e-16
1t2k_C62 Structure Of The Dna Binding Domains Of Irf3, Atf-2 1e-15
1a02_J56 Structure Of The Dna Binding Domains Of Nfat, Fos A 1e-13
1s9k_E52 Crystal Structure Of Human Nfat1 And Fos-Jun On The 2e-13
1jun_A44 Nmr Study Of C-Jun Homodimer Length = 44 2e-05
>pdb|1JNM|A Chain A, Crystal Structure Of The JunCRE COMPLEX Length = 62 Back     alignment and structure 
Iteration: 1

 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 51/62 (82%)
Query: 298 KIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357
           K ERKR RNR+AASK RKRKLERIA LEE+VK LK +N+ELAS A+ L++QV  LK++VM
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60
Query: 358 EH 359
            H
Sbjct: 61  NH 62
>pdb|1T2K|C Chain C, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And Jun Bound To Dna Length = 62 Back     alignment and structure
>pdb|1A02|J Chain J, Structure Of The Dna Binding Domains Of Nfat, Fos And Jun Bound To Dna Length = 56 Back     alignment and structure
>pdb|1S9K|E Chain E, Crystal Structure Of Human Nfat1 And Fos-Jun On The Il-2 Arre1 Site Length = 52 Back     alignment and structure
>pdb|1JUN|A Chain A, Nmr Study Of C-Jun Homodimer Length = 44 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
1jnm_A62 Proto-oncogene C-JUN; BZIP, protein-DNA complex, t 4e-21
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 2e-15
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 2e-15
2dgc_A63 Protein (GCN4); basic domain, leucine zipper, DNA 2e-12
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 2e-12
1dh3_A55 Transcription factor CREB; protein-DNA complex, tr 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
3a5t_A107 Transcription factor MAFG; protein-DNA complex, BZ 2e-09
2wt7_B90 Transcription factor MAFB; transcription, transcri 2e-09
1hjb_A87 Ccaat/enhancer binding protein beta; transcription 3e-09
1gu4_A78 CAAT/enhancer binding protein beta; transcription/ 2e-08
1skn_P92 DNA-binding domain of SKN-1; complex (transcriptio 1e-06
1gd2_E70 Transcription factor PAP1; basic leucine zipper, p 5e-05
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 6e-04
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62 Back     alignment and structure
 Score = 84.7 bits (210), Expect = 4e-21
 Identities = 42/62 (67%), Positives = 51/62 (82%)

Query: 298 KIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357
           K ERKR RNR+AASK RKRKLERIA LEE+VK LK +N+ELAS A+ L++QV  LK++VM
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60

Query: 358 EH 359
            H
Sbjct: 61  NH 62
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63 Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61 Back     alignment and structure
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63 Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63 Back     alignment and structure
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107 Back     alignment and structure
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90 Back     alignment and structure
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87 Back     alignment and structure
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Length = 78 Back     alignment and structure
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1 Length = 92 Back     alignment and structure
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
1jnm_A62 Proto-oncogene C-JUN; BZIP, protein-DNA complex, t 99.66
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 99.65
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 99.61
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 99.52
2dgc_A63 Protein (GCN4); basic domain, leucine zipper, DNA 99.28
1gu4_A78 CAAT/enhancer binding protein beta; transcription/ 99.26
1hjb_A87 Ccaat/enhancer binding protein beta; transcription 99.21
1dh3_A55 Transcription factor CREB; protein-DNA complex, tr 99.1
1gd2_E70 Transcription factor PAP1; basic leucine zipper, p 98.71
2wt7_B90 Transcription factor MAFB; transcription, transcri 98.68
3a5t_A107 Transcription factor MAFG; protein-DNA complex, BZ 98.57
1skn_P92 DNA-binding domain of SKN-1; complex (transcriptio 98.2
2c9l_Y63 EB1, zebra, BZLF1 trans-activator protein; viral p 97.46
2oqq_A42 Transcription factor HY5; homodimer leucine zipper 97.45
2kz5_A91 Transcription factor NF-E2 45 kDa subunit; structu 97.38
2lz1_A90 Nuclear factor erythroid 2-related factor 2; struc 95.95
1kd8_B36 GABH BLL, GCN4 acid base heterodimer base-D12LA16L 94.56
2oxj_A34 Hybrid alpha/beta peptide based on the GCN4-P1 Se 94.05
1kd8_A36 GABH AIV, GCN4 acid base heterodimer acid-D12IA16V 93.83
3m48_A33 General control protein GCN4; leucine zipper, synt 93.56
3c3f_A34 Alpha/beta peptide with the GCN4-PLI SIDE chain S 93.18
2bni_A34 General control protein GCN4; four helix bundle, a 92.18
2wq1_A33 General control protein GCN4; TAA, nucleus, coiled 92.13
3c3g_A33 Alpha/beta peptide with the GCN4-PLI SIDE chain S 92.13
2hy6_A34 General control protein GCN4; protein design, para 91.74
2yy0_A53 C-MYC-binding protein; conserved hypothetical prot 91.45
1uo4_A34 General control protein GCN4; four helix bundle, c 91.31
3m91_A51 Proteasome-associated ATPase; coil COIL alpha heli 88.71
2r2v_A34 GCN4 leucine zipper; coiled coils, anti-parallel t 86.27
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 85.24
3nmd_A72 CGMP dependent protein kinase; leucine zipper, coi 84.14
3he5_B52 Synzip2; heterodimeric coiled-coil, de novo protei 83.39
3ra3_A28 P1C; coiled coil domain, fiber, KIH interactions, 82.05
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 81.27
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 81.12
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Back     alignment and structure
Probab=99.66  E-value=1.1e-16  Score=122.13  Aligned_cols=62  Identities=68%  Similarity=0.899  Sum_probs=54.8

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7086         298 KIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEH  359 (376)
Q Consensus       298 KreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H  359 (376)
                      |.+|||+|||+||+|||+||++++.+||.+|..|+.+|.+|..++..|+.|+.+||++|+.|
T Consensus         1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~~H   62 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVMNH   62 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred             ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            46899999999999999999999999999999999999999999999999999999999998
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Back     alignment and structure
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Back     alignment and structure
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Back     alignment and structure
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Back     alignment and structure
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Back     alignment and structure
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Back     alignment and structure
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1 Back     alignment and structure
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y Back     alignment and structure
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B Back     alignment and structure
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A* Back     alignment and structure
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A Back     alignment and structure
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A Back     alignment and structure
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1 Back     alignment and structure
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ... Back     alignment and structure
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ... Back     alignment and structure
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A* Back     alignment and structure
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A Back     alignment and structure
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} Back     alignment and structure
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A* Back     alignment and structure
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A Back     alignment and structure
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1 Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens} Back     alignment and structure
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene} Back     alignment and structure
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic} Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 376
d1sknp_74 a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId 9e-04
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]} Length = 74 Back     information, alignment and structure

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 35.5 bits (82), Expect = 9e-04
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 301 RKRQRNRVAASKCRKRKLERIANL 324
           R+R +N+VAA  CR+R+ +R   +
Sbjct: 51  RRRGKNKVAARTCRQRRTDRHDKM 74

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
d1sknp_74 Skn-1 {Caenorhabditis elegans [TaxId: 6239]} 97.62
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.62  E-value=1.3e-05  Score=61.64  Aligned_cols=37  Identities=30%  Similarity=0.566  Sum_probs=31.0

Q ss_pred             CCCcchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy7086         288 PIDMESQERIKIERKRQRNRVAASKCRKRKLERIANL  324 (376)
Q Consensus       288 PiD~eeqE~iKreRRReRNRvAAsKCRqRKKe~I~~L  324 (376)
                      +.+.++...++..|||-+||+||+.||+||.+.+++|
T Consensus        38 ~Lte~Ql~lirDIRRRGKNKvAAqnCRKRKld~~d~l   74 (74)
T d1sknp_          38 SLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKM   74 (74)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCCHHHHHHHHHHHHhcccHHHHHHHHHhhhhhhccC
Confidence            3455666778999999999999999999999987653