Psyllid ID: psy7088
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 873 | 2.2.26 [Sep-21-2011] | |||||||
| Q299G2 | 1291 | Cytoplasmic FMR1-interact | yes | N/A | 0.781 | 0.528 | 0.758 | 0.0 | |
| Q9VF87 | 1291 | Cytoplasmic FMR1-interact | yes | N/A | 0.777 | 0.525 | 0.760 | 0.0 | |
| Q5R414 | 1253 | Cytoplasmic FMR1-interact | yes | N/A | 0.735 | 0.512 | 0.651 | 0.0 | |
| Q5SQX6 | 1253 | Cytoplasmic FMR1-interact | yes | N/A | 0.735 | 0.512 | 0.651 | 0.0 | |
| Q96F07 | 1278 | Cytoplasmic FMR1-interact | yes | N/A | 0.735 | 0.502 | 0.651 | 0.0 | |
| Q6GQD1 | 1253 | Cytoplasmic FMR1-interact | N/A | N/A | 0.735 | 0.512 | 0.653 | 0.0 | |
| Q90YM8 | 1253 | Cytoplasmic FMR1-interact | no | N/A | 0.734 | 0.511 | 0.647 | 0.0 | |
| Q7TMB8 | 1253 | Cytoplasmic FMR1-interact | no | N/A | 0.735 | 0.512 | 0.647 | 0.0 | |
| Q7L576 | 1253 | Cytoplasmic FMR1-interact | no | N/A | 0.735 | 0.512 | 0.647 | 0.0 | |
| O44518 | 1262 | Cytoplasmic FMR1-interact | yes | N/A | 0.733 | 0.507 | 0.491 | 0.0 |
| >sp|Q299G2|CYFIP_DROPS Cytoplasmic FMR1-interacting protein OS=Drosophila pseudoobscura pseudoobscura GN=Sra-1 PE=3 SV=1 | Back alignment and function desciption |
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Score = 1151 bits (2977), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/712 (75%), Positives = 604/712 (84%), Gaps = 30/712 (4%)
Query: 164 DSLQQCCDLSQLWYREFYLEMTMGRRIQKCVVRHQHNEECSDLITMEKRIQFPIEMSMPW 223
D+LQ+CCDLSQLWYREFYLEMTMGR++ KC+VRHQHNEEC DLITMEKRIQFPIEMSMPW
Sbjct: 605 DTLQKCCDLSQLWYREFYLEMTMGRKVNKCMVRHQHNEECKDLITMEKRIQFPIEMSMPW 664
Query: 224 ILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKL 283
ILTDHIL+TKEPSMME+VLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKL
Sbjct: 665 ILTDHILQTKEPSMMEFVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKL 724
Query: 284 SEQIFAHYKQLAASMLLDKRFRVECMAMGTYLLAYPRANRYETLLRQRHVQLLGRSIDLN 343
SEQIFAHYKQLA S+ LDKRFR+EC +G +YPR NRYETLL+QRHVQLLGRSIDLN
Sbjct: 725 SEQIFAHYKQLAGSIFLDKRFRLECEVLGFNFQSYPRNNRYETLLKQRHVQLLGRSIDLN 784
Query: 344 KLITQRINADMHKSLDLAISKFEHGDITGVVELEGLLAVNRLCHKLLSKLLGLDDYDAML 403
KL+TQRINA+MHKS++LAIS+FE DITG+VELEGLL NR+CHKLLSK L LD++D M+
Sbjct: 785 KLVTQRINANMHKSIELAISRFEANDITGIVELEGLLEANRICHKLLSKYLALDNFDGMV 844
Query: 404 HEANHNVLAPYGRITLHIFWELNYDFLPNYCYNGATNRITLHIFWELNYDFLPNYCYNGA 463
EANHNVLAPYGRITLH +F ELNYDFL NYCYN A
Sbjct: 845 KEANHNVLAPYGRITLH-------------------------VFVELNYDFLVNYCYNAA 879
Query: 464 TNRFIKCR-GIMFTQQIHREKLPPMTHTYSWGSKQLNMAYYSIYGQYTGFVGAYHFRAMC 522
TNRFI+ + + TQ I REK P M+H Y WGSKQLN AY + YGQYTGFVG+ HF AMC
Sbjct: 880 TNRFIRTKVNLSSTQAIQREKPPQMSHYYLWGSKQLNAAYSTQYGQYTGFVGSPHFHAMC 939
Query: 523 RLLGYQGIAVVMEELLK-IVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGYYH 581
RLLGYQGIAVVM+ +LK IV LIQGSLLQFTKTLM AMPK CKLPR +YGSPGVL YY
Sbjct: 940 RLLGYQGIAVVMDIILKDIVKPLIQGSLLQFTKTLMIAMPKSCKLPRCEYGSPGVLSYYQ 999
Query: 582 AQLNDIVQYPDAKTELFHNFRELGNTILFCLLMEQALSQEEVCDLLHAAPFQNILPRPYC 641
A L DIVQYPD KTELF +FRE GN I+FCLL+EQALSQEEVCDLLHAA FQNI PRP+C
Sbjct: 1000 AHLTDIVQYPDTKTELFQSFREFGNCIIFCLLIEQALSQEEVCDLLHAALFQNIFPRPFC 1059
Query: 642 KEGEKPETKQKRLEQKYASLQIVSNIDRLGTAKQAMIAREGDLLTRERLCCGLSIFEVVL 701
KE EKPE KQKRLE ++A+LQIVSN++++GTAKQAMIAREGDLLTRERLCCGLSIFEV+L
Sbjct: 1060 KENEKPEAKQKRLEAQFANLQIVSNVEKIGTAKQAMIAREGDLLTRERLCCGLSIFEVIL 1119
Query: 702 NRLRGFLDDPIWVGPPPTNGVINIDECTEFHRLWSALQFVYCIPVGDTEFTVEELFGEGL 761
NR++ +LDDP+W GPPP NG+I++DEC+EFHRLWSALQFVYCIPV TE+T+EELFGEGL
Sbjct: 1120 NRVKSYLDDPVWCGPPPANGIIHVDECSEFHRLWSALQFVYCIPVRGTEYTIEELFGEGL 1179
Query: 762 NWAGCTMIVLLGQQRRFEALDFCYHILRVQRVDGRDENVKGIHLKRMVDRIRRFQVVNSQ 821
NWAGC MIVLLGQQRRFEALDFCYHILRVQRVDG+DE+VKGI LKRMVDRIRRFQV+NSQ
Sbjct: 1180 NWAGCVMIVLLGQQRRFEALDFCYHILRVQRVDGKDEDVKGIQLKRMVDRIRRFQVLNSQ 1239
Query: 822 IFATLNKYLGSSDADAASVEHVRCFPPPIHPSLAQQHGHYYRPENM---MNN 870
IF+ LNKYL D + ++VEHVRCFPPP HPS+ HY P+ + MNN
Sbjct: 1240 IFSILNKYLKGGDGEGSNVEHVRCFPPPQHPSVISSSSHYQDPQKLRQSMNN 1291
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Plays a role in guidance and morphology of central and peripheral axons and in synaptic morphology. Also required for formation of cell membrane protrusions and for bristle development. Drosophila pseudoobscura pseudoobscura (taxid: 46245) |
| >sp|Q9VF87|CYFIP_DROME Cytoplasmic FMR1-interacting protein OS=Drosophila melanogaster GN=Sra-1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5R414|CYFP2_PONAB Cytoplasmic FMR1-interacting protein 2 OS=Pongo abelii GN=CYFIP2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5SQX6|CYFP2_MOUSE Cytoplasmic FMR1-interacting protein 2 OS=Mus musculus GN=Cyfip2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q96F07|CYFP2_HUMAN Cytoplasmic FMR1-interacting protein 2 OS=Homo sapiens GN=CYFIP2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q6GQD1|CYFP2_XENLA Cytoplasmic FMR1-interacting protein 2 OS=Xenopus laevis GN=cyfip2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q90YM8|CYFP1_DANRE Cytoplasmic FMR1-interacting protein 1 homolog OS=Danio rerio GN=cyfip1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7TMB8|CYFP1_MOUSE Cytoplasmic FMR1-interacting protein 1 OS=Mus musculus GN=Cyfip1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q7L576|CYFP1_HUMAN Cytoplasmic FMR1-interacting protein 1 OS=Homo sapiens GN=CYFIP1 PE=1 SV=1 | Back alignment and function description |
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| >sp|O44518|CYFIP_CAEEL Cytoplasmic FMR1-interacting protein homolog OS=Caenorhabditis elegans GN=gex-2 PE=1 SV=4 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 873 | ||||||
| 242011745 | 1288 | conserved hypothetical protein [Pediculu | 0.775 | 0.525 | 0.863 | 0.0 | |
| 156545874 | 1315 | PREDICTED: cytoplasmic FMR1-interacting | 0.782 | 0.519 | 0.847 | 0.0 | |
| 332022826 | 1291 | Cytoplasmic FMR1-interacting protein [Ac | 0.782 | 0.529 | 0.847 | 0.0 | |
| 110772336 | 1292 | PREDICTED: cytoplasmic FMR1-interacting | 0.782 | 0.528 | 0.849 | 0.0 | |
| 340715094 | 1292 | PREDICTED: cytoplasmic FMR1-interacting | 0.782 | 0.528 | 0.849 | 0.0 | |
| 380020009 | 1292 | PREDICTED: LOW QUALITY PROTEIN: cytoplas | 0.782 | 0.528 | 0.849 | 0.0 | |
| 350414685 | 1292 | PREDICTED: cytoplasmic FMR1-interacting | 0.782 | 0.528 | 0.849 | 0.0 | |
| 322797016 | 1277 | hypothetical protein SINV_06151 [Solenop | 0.781 | 0.534 | 0.847 | 0.0 | |
| 307201321 | 1282 | Cytoplasmic FMR1-interacting protein [Ha | 0.782 | 0.532 | 0.845 | 0.0 | |
| 383860827 | 1292 | PREDICTED: cytoplasmic FMR1-interacting | 0.782 | 0.528 | 0.847 | 0.0 |
| >gi|242011745|ref|XP_002426607.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212510756|gb|EEB13869.1| conserved hypothetical protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
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Score = 1284 bits (3323), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 608/704 (86%), Positives = 639/704 (90%), Gaps = 27/704 (3%)
Query: 164 DSLQQCCDLSQLWYREFYLEMTMGRRIQKCVVRHQHNEECSDLITMEKRIQFPIEMSMPW 223
+SLQQCCDLSQLWYREFYLEMTMGRRIQKC VRHQHNEECSDLITMEKRIQFPIEMSMPW
Sbjct: 606 ESLQQCCDLSQLWYREFYLEMTMGRRIQKCTVRHQHNEECSDLITMEKRIQFPIEMSMPW 665
Query: 224 ILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKL 283
ILTDHIL+TKEPSMMEYVLYPLDLYNDSA +ALT+FRKQFLYDEVEAEVNLCFDQFVYKL
Sbjct: 666 ILTDHILRTKEPSMMEYVLYPLDLYNDSAQWALTIFRKQFLYDEVEAEVNLCFDQFVYKL 725
Query: 284 SEQIFAHYKQLAASMLLDKRFRVECMAMGTYLLAYPRANRYETLLRQRHVQLLGRSIDLN 343
SEQIF+HYKQLAAS+LLDKRFR EC+AMGTYL YPRANRYETLL+QRHVQLLGRSIDLN
Sbjct: 726 SEQIFSHYKQLAASILLDKRFRAECVAMGTYL-HYPRANRYETLLKQRHVQLLGRSIDLN 784
Query: 344 KLITQRINADMHKSLDLAISKFEHGDITGVVELEGLLAVNRLCHKLLSKLLGLDDYDAML 403
KLITQRINADM KSLDLAISKFE GDITGVVEL+G+L VN+LCHKLLSKLL LDDYDAM
Sbjct: 785 KLITQRINADMQKSLDLAISKFEAGDITGVVELDGILQVNKLCHKLLSKLLALDDYDAMF 844
Query: 404 HEANHNVLAPYGRITLHIFWELNYDFLPNYCYNGATNRITLHIFWELNYDFLPNYCYNGA 463
EANHNVLAPYGRITL H+FWELNYDFLPNYCYN A
Sbjct: 845 REANHNVLAPYGRITL-------------------------HVFWELNYDFLPNYCYNAA 879
Query: 464 TNRFIKCRGIMFTQQIHREKLPPMTHTYSWGSKQLNMAYYSIYGQYTGFVGAYHFRAMCR 523
TNRF+K RGI F Q +HR+K P M H Y WGSKQLN+AY +IYGQYTGFVG+YHFR MCR
Sbjct: 880 TNRFVKTRGIQFAQPVHRDKPPLMGHQYLWGSKQLNLAYSTIYGQYTGFVGSYHFRMMCR 939
Query: 524 LLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGYYHAQ 583
LLGYQGIAVVMEELLKIV LIQG+LLQFTKTLMDAMPK CKLPRYDYGSPGVL YYHAQ
Sbjct: 940 LLGYQGIAVVMEELLKIVKLLIQGNLLQFTKTLMDAMPKICKLPRYDYGSPGVLQYYHAQ 999
Query: 584 LNDIVQYPDAKTELFHNFRELGNTILFCLLMEQALSQEEVCDLLHAAPFQNILPRPYCKE 643
LNDIVQYPDAKTELFHNFRELGNTI+FCLLMEQALSQEEVCDLLHAAPFQNILPRP+CKE
Sbjct: 1000 LNDIVQYPDAKTELFHNFRELGNTIIFCLLMEQALSQEEVCDLLHAAPFQNILPRPHCKE 1059
Query: 644 GEKPETKQKRLEQKYASLQIVSNIDRLGTAKQAMIAREGDLLTRERLCCGLSIFEVVLNR 703
GEKPE KQKRLEQKYASLQIV NI+RLG+AKQA+IAREGDLLTRERLCCGLSIFEVVLNR
Sbjct: 1060 GEKPENKQKRLEQKYASLQIVPNIERLGSAKQALIAREGDLLTRERLCCGLSIFEVVLNR 1119
Query: 704 LRGFLDDPIWVGPPPTNGVINIDECTEFHRLWSALQFVYCIPVGDTEFTVEELFGEGLNW 763
LR FLDD WVGPPPTNGVIN+DEC+EFHRLWSALQFVYCIPVGDTEFTVEELFGEGLNW
Sbjct: 1120 LRSFLDDSTWVGPPPTNGVINVDECSEFHRLWSALQFVYCIPVGDTEFTVEELFGEGLNW 1179
Query: 764 AGCTMIVLLGQQRRFEALDFCYHILRVQRVDGRDENVKGIHLKRMVDRIRRFQVVNSQIF 823
AGCTMIVLLGQQRRFEALDFCYHILRVQRVDG+DENVKGIHLKRMVDRIRRFQV+NSQIF
Sbjct: 1180 AGCTMIVLLGQQRRFEALDFCYHILRVQRVDGKDENVKGIHLKRMVDRIRRFQVLNSQIF 1239
Query: 824 ATLNKYLGSSDADAASVEHVRCFPPPIHPSLAQQHGHYYRPENM 867
A LNKYL SSD D SVEHVRCFPPPIHPSLA Q HY+RPE++
Sbjct: 1240 AVLNKYLKSSDTDVMSVEHVRCFPPPIHPSLAAQ-AHYHRPEHL 1282
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Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156545874|ref|XP_001606532.1| PREDICTED: cytoplasmic FMR1-interacting protein-like [Nasonia vitripennis] | Back alignment and taxonomy information |
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| >gi|332022826|gb|EGI63099.1| Cytoplasmic FMR1-interacting protein [Acromyrmex echinatior] | Back alignment and taxonomy information |
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| >gi|110772336|ref|XP_395632.3| PREDICTED: cytoplasmic FMR1-interacting protein isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|340715094|ref|XP_003396055.1| PREDICTED: cytoplasmic FMR1-interacting protein-like [Bombus terrestris] | Back alignment and taxonomy information |
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| >gi|380020009|ref|XP_003693891.1| PREDICTED: LOW QUALITY PROTEIN: cytoplasmic FMR1-interacting protein-like [Apis florea] | Back alignment and taxonomy information |
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| >gi|350414685|ref|XP_003490387.1| PREDICTED: cytoplasmic FMR1-interacting protein-like [Bombus impatiens] | Back alignment and taxonomy information |
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| >gi|322797016|gb|EFZ19330.1| hypothetical protein SINV_06151 [Solenopsis invicta] | Back alignment and taxonomy information |
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| >gi|307201321|gb|EFN81168.1| Cytoplasmic FMR1-interacting protein [Harpegnathos saltator] | Back alignment and taxonomy information |
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| >gi|383860827|ref|XP_003705890.1| PREDICTED: cytoplasmic FMR1-interacting protein-like isoform 1 [Megachile rotundata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 873 | ||||||
| UNIPROTKB|Q299G2 | 1291 | Sra-1 "Cytoplasmic FMR1-intera | 0.526 | 0.356 | 0.712 | 6.3e-309 | |
| FB|FBgn0038320 | 1291 | Sra-1 "specifically Rac1-assoc | 0.523 | 0.353 | 0.715 | 3.5e-308 | |
| UNIPROTKB|F1NE09 | 1256 | CYFIP2 "Uncharacterized protei | 0.484 | 0.336 | 0.655 | 5.6e-269 | |
| UNIPROTKB|F1PMM7 | 1310 | CYFIP2 "Uncharacterized protei | 0.484 | 0.322 | 0.653 | 7.1e-269 | |
| UNIPROTKB|E7EVF4 | 1253 | CYFIP2 "Cytoplasmic FMR1-inter | 0.484 | 0.337 | 0.653 | 7.1e-269 | |
| UNIPROTKB|E7EWA4 | 1278 | CYFIP2 "Cytoplasmic FMR1-inter | 0.484 | 0.330 | 0.653 | 7.1e-269 | |
| UNIPROTKB|Q96F07 | 1278 | CYFIP2 "Cytoplasmic FMR1-inter | 0.484 | 0.330 | 0.653 | 7.1e-269 | |
| UNIPROTKB|Q5R414 | 1253 | CYFIP2 "Cytoplasmic FMR1-inter | 0.484 | 0.337 | 0.653 | 7.1e-269 | |
| MGI|MGI:1924134 | 1253 | Cyfip2 "cytoplasmic FMR1 inter | 0.484 | 0.337 | 0.653 | 7.1e-269 | |
| ZFIN|ZDB-GENE-080724-2 | 1253 | cyfip2 "cytoplasmic FMR1 inter | 0.513 | 0.357 | 0.616 | 2.4e-266 |
| UNIPROTKB|Q299G2 Sra-1 "Cytoplasmic FMR1-interacting protein" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] | Back alignment and assigned GO terms |
|---|
Score = 1776 (630.2 bits), Expect = 6.3e-309, Sum P(2) = 6.3e-309
Identities = 342/480 (71%), Positives = 389/480 (81%)
Query: 403 LHEAN---HNVLAPYGRITLHIF----WELNYDFLPNYCYNGATNRITLHIFWELNYDFL 455
L EAN H +L+ Y + L F E N++ L Y RITLH+F ELNYDFL
Sbjct: 820 LLEANRICHKLLSKY--LALDNFDGMVKEANHNVLAPY------GRITLHVFVELNYDFL 871
Query: 456 PNYCYNGATNRFIKCR-GIMFTQQIHREKLPPMTHTYSWGSKQLNMAYYSIYGQYTGFVG 514
NYCYN ATNRFI+ + + TQ I REK P M+H Y WGSKQLN AY + YGQYTGFVG
Sbjct: 872 VNYCYNAATNRFIRTKVNLSSTQAIQREKPPQMSHYYLWGSKQLNAAYSTQYGQYTGFVG 931
Query: 515 AYHFRAMCRLLGYQGIAVVMEELLK-IVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGS 573
+ HF AMCRLLGYQGIAVVM+ +LK IV LIQGSLLQFTKTLM AMPK CKLPR +YGS
Sbjct: 932 SPHFHAMCRLLGYQGIAVVMDIILKDIVKPLIQGSLLQFTKTLMIAMPKSCKLPRCEYGS 991
Query: 574 PGVLGYYHAQLNDIVQYPDAKTELFHNFRELGNTILFCLLMEQALSQEEVCDLLHAAPFQ 633
PGVL YY A L DIVQYPD KTELF +FRE GN I+FCLL+EQALSQEEVCDLLHAA FQ
Sbjct: 992 PGVLSYYQAHLTDIVQYPDTKTELFQSFREFGNCIIFCLLIEQALSQEEVCDLLHAALFQ 1051
Query: 634 NILPRPYCKEGEKPETKQKRLEQKYASLQIVSNIDRLGTAKQAMIAREGDLLTRERLCCG 693
NI PRP+CKE EKPE KQKRLE ++A+LQIVSN++++GTAKQAMIAREGDLLTRERLCCG
Sbjct: 1052 NIFPRPFCKENEKPEAKQKRLEAQFANLQIVSNVEKIGTAKQAMIAREGDLLTRERLCCG 1111
Query: 694 LSIFEVVLNRLRGFLDDPIWVGPPPTNGVINIDECTEFHRLWSALQFVYCIPVGDTEFTV 753
LSIFEV+LNR++ +LDDP+W GPPP NG+I++DEC+EFHRLWSALQFVYCIPV TE+T+
Sbjct: 1112 LSIFEVILNRVKSYLDDPVWCGPPPANGIIHVDECSEFHRLWSALQFVYCIPVRGTEYTI 1171
Query: 754 EELFGEGLNWAGCTMIVLLGQQRRFEALDFCYHILRVQRVDGRDENVKGIHLKRMVDRIR 813
EELFGEGLNWAGC MIVLLGQQRRFEALDFCYHILRVQRVDG+DE+VKGI LKRMVDRIR
Sbjct: 1172 EELFGEGLNWAGCVMIVLLGQQRRFEALDFCYHILRVQRVDGKDEDVKGIQLKRMVDRIR 1231
Query: 814 RFQVVNSQIFATLNKYLGSSDADAASVEHVRCFPPPIHPSLAQQHGHYYRPENM---MNN 870
RFQV+NSQIF+ LNKYL D + ++VEHVRCFPPP HPS+ HY P+ + MNN
Sbjct: 1232 RFQVLNSQIFSILNKYLKGGDGEGSNVEHVRCFPPPQHPSVISSSSHYQDPQKLRQSMNN 1291
|
|
| FB|FBgn0038320 Sra-1 "specifically Rac1-associated protein 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NE09 CYFIP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PMM7 CYFIP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E7EVF4 CYFIP2 "Cytoplasmic FMR1-interacting protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E7EWA4 CYFIP2 "Cytoplasmic FMR1-interacting protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q96F07 CYFIP2 "Cytoplasmic FMR1-interacting protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5R414 CYFIP2 "Cytoplasmic FMR1-interacting protein 2" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
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| MGI|MGI:1924134 Cyfip2 "cytoplasmic FMR1 interacting protein 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-080724-2 cyfip2 "cytoplasmic FMR1 interacting protein 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9VF87 | CYFIP_DROME | No assigned EC number | 0.7606 | 0.7777 | 0.5259 | yes | N/A |
| Q96F07 | CYFP2_HUMAN | No assigned EC number | 0.6517 | 0.7353 | 0.5023 | yes | N/A |
| Q299G2 | CYFIP_DROPS | No assigned EC number | 0.7584 | 0.7812 | 0.5282 | yes | N/A |
| Q5R414 | CYFP2_PONAB | No assigned EC number | 0.6517 | 0.7353 | 0.5123 | yes | N/A |
| Q5SQX6 | CYFP2_MOUSE | No assigned EC number | 0.6517 | 0.7353 | 0.5123 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 5.3.3.2 | LOW CONFIDENCE prediction! |
| 3rd Layer | 5.3.3 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 873 | |||
| pfam05994 | 815 | pfam05994, FragX_IP, Cytoplasmic Fragile-X interac | 0.0 | |
| PLN03099 | 1232 | PLN03099, PIR, Protein PIR; Provisional | 1e-113 | |
| cd02809 | 299 | cd02809, alpha_hydroxyacid_oxid_FMN, Family of hom | 2e-46 | |
| pfam01070 | 302 | pfam01070, FMN_dh, FMN-dependent dehydrogenase | 8e-46 | |
| PLN02535 | 364 | PLN02535, PLN02535, glycolate oxidase | 1e-35 | |
| cd02922 | 344 | cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-b | 1e-33 | |
| PLN02979 | 366 | PLN02979, PLN02979, glycolate oxidase | 2e-33 | |
| cd03332 | 383 | cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) | 7e-33 | |
| PLN02493 | 367 | PLN02493, PLN02493, probable peroxisomal (S)-2-hyd | 7e-31 | |
| COG1304 | 360 | COG1304, idi, Isopentenyl diphosphate isomerase (B | 6e-24 | |
| cd04737 | 351 | cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN | 9e-20 | |
| TIGR02708 | 367 | TIGR02708, L_lactate_ox, L-lactate oxidase | 4e-17 | |
| cd04736 | 361 | cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-li | 7e-16 | |
| TIGR03966 | 385 | TIGR03966, actino_HemFlav, heme/flavin dehydrogena | 7e-15 | |
| PRK11197 | 381 | PRK11197, lldD, L-lactate dehydrogenase; Provision | 2e-12 |
| >gnl|CDD|218846 pfam05994, FragX_IP, Cytoplasmic Fragile-X interacting family | Back alignment and domain information |
|---|
Score = 822 bits (2126), Expect = 0.0
Identities = 346/678 (51%), Positives = 434/678 (64%), Gaps = 96/678 (14%)
Query: 164 DSLQQCCDLSQLWYREFYLEMTMGRRIQKCVVRHQHNEECSDLITMEKRIQFPIEMSMPW 223
+SL + CDLSQLW+REFYL++ KRIQFPIE S+PW
Sbjct: 221 ESLDKACDLSQLWFREFYLDLN-------------------------KRIQFPIETSLPW 255
Query: 224 ILTDHILKTKEP-SMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYK 282
ILTDHIL+T EP S+ E + YPL +YND+A YAL QFLYDE+EAE NLCFDQ VYK
Sbjct: 256 ILTDHILETYEPPSLTEAIFYPLSIYNDAAQYALKKLNSQFLYDEIEAEANLCFDQIVYK 315
Query: 283 LSEQIFAHYKQLAASMLLDKRFRVECMAMGTYLLAYPRANRYETLLRQRHVQLLGRSIDL 342
L++Q+F H K+ A S+LLDKRFR E G +L P ANR+E LL+Q H+QLLGRSIDL
Sbjct: 316 LADQVFTHIKEFATSILLDKRFRAELKESGLNIL-NPPANRFEVLLQQNHLQLLGRSIDL 374
Query: 343 NKLITQRINADMHKSLDLAISKFEHGDITGVVELEGLLAVNRLCHKLLSK-LLGLDDYDA 401
N+LI QR+N + KSLD AIS+FE D+T +VELE L+ + RL HKLLS+ L+ LD +D
Sbjct: 375 NRLIAQRLNELIVKSLDAAISRFEANDLTSIVELERLVDILRLTHKLLSEYLIPLDPFDD 434
Query: 402 MLHEANHNVL--APYGRITLHIFWELNYDFLPNYCYNGATNRITLHIFWELNYDFLPNYC 459
M EANHN +P RI LH+FWELNYDFLPNY YN + NRI
Sbjct: 435 MFREANHNDSPNSPQSRILLHVFWELNYDFLPNYFYNSSPNRIP---------------- 478
Query: 460 YNGATNRFIKCRGIMFTQQIHREKLPPMTHTYSWGSKQLNMAYYSIYGQYTGFVGAYHFR 519
F++++ R+K P + Y GSK LN A+ +I QYT F+G HFR
Sbjct: 479 ---------------FSEELPRDKPPIVQPIYLLGSKALNAAFAAILKQYTNFIGPEHFR 523
Query: 520 AMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGY 579
A+CRLLGY GIAV+ +ELLK L++ ++L F K M MPK +LP DYGS GV Y
Sbjct: 524 ALCRLLGYGGIAVLSQELLK----LLEEAILPFVKIYMSVMPKITRLPPLDYGSHGVYDY 579
Query: 580 YHAQLNDIVQYPDAKTELFHNFRELGNTILFCLLMEQALSQEEVCDLLHAAPFQNILPRP 639
+ L D V YP+ + +LF RELGN I FC L++QAL QE DL+ AAPF NI PR
Sbjct: 580 FEGALKDFVSYPELR-KLFQLMRELGNIIAFCQLLDQALLQETTGDLISAAPFSNIPPRV 638
Query: 640 YCKEGEKPET----KQKRLEQKYASLQIVSNIDRLGTAKQAMIAREGDLLTRERLCCGLS 695
Y KEG + T + K+L++ +A+L+IV + DLLTR RLCCG S
Sbjct: 639 YVKEGPELFTLFDQQFKQLKKYFATLEIVPSD--------------KDLLTRFRLCCGES 684
Query: 696 IFEVVLNRLRGFLDDPIWVGPPPTNGVINIDECTEFHRLWSALQFVYCIPVG-DTEFTVE 754
+FEV+L R+ FL+ W +NGV+++D CTEF RLWSALQFVYCIPV E + E
Sbjct: 685 LFEVILTRIDSFLET--W-----SNGVMDVDSCTEFARLWSALQFVYCIPVVNTNEKSAE 737
Query: 755 ELFGEGLNWAGCTMIVLLGQQRRFEALDFCYHILRVQR----VDGRDENVKGIHLKRMVD 810
ELFGEGL WA C +I LLGQQRRFE L CYHIL+V VD +DE +K + LK+MV+
Sbjct: 738 ELFGEGLIWAACALIHLLGQQRRFEVLSICYHILKVNEADNEVDEKDELIKFLALKKMVE 797
Query: 811 RIRRFQVVNSQIFATLNK 828
RIR+F ++N+QIFA LNK
Sbjct: 798 RIRQFALLNNQIFAILNK 815
|
CYFIP1/2 (Cytoplasmic fragile X mental retardation interacting protein) like proteins for a highly conserved protein family. The function of CYFIPs is unclear, but CYFIP interaction with fragile X mental retardation interacting protein (FMRP) involves the domain of FMRP which also mediating homo- and heteromerization. Length = 815 |
| >gnl|CDD|215574 PLN03099, PIR, Protein PIR; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|239203 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
| >gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase | Back alignment and domain information |
|---|
| >gnl|CDD|215294 PLN02535, PLN02535, glycolate oxidase | Back alignment and domain information |
|---|
| >gnl|CDD|239238 cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|166620 PLN02979, PLN02979, glycolate oxidase | Back alignment and domain information |
|---|
| >gnl|CDD|239448 cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|166134 PLN02493, PLN02493, probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
| >gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|240088 cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|131755 TIGR02708, L_lactate_ox, L-lactate oxidase | Back alignment and domain information |
|---|
| >gnl|CDD|240087 cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|188481 TIGR03966, actino_HemFlav, heme/flavin dehydrogenase, mycofactocin system | Back alignment and domain information |
|---|
| >gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 873 | |||
| KOG3534|consensus | 1253 | 100.0 | ||
| PLN03099 | 1232 | PIR Protein PIR; Provisional | 100.0 | |
| PF05994 | 820 | FragX_IP: Cytoplasmic Fragile-X interacting family | 100.0 | |
| KOG0538|consensus | 363 | 100.0 | ||
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 100.0 | |
| PLN02979 | 366 | glycolate oxidase | 100.0 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 100.0 | |
| PLN02535 | 364 | glycolate oxidase | 100.0 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 100.0 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 100.0 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 100.0 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 100.0 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 100.0 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 100.0 | |
| COG1304 | 360 | idi Isopentenyl diphosphate isomerase (BS_ypgA, MT | 99.94 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 99.81 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 98.55 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 98.51 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 98.38 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 97.14 | |
| KOG3534|consensus | 1253 | 96.47 | ||
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 96.4 | |
| PF05994 | 820 | FragX_IP: Cytoplasmic Fragile-X interacting family | 95.55 | |
| PF09735 | 1116 | Nckap1: Membrane-associated apoptosis protein; Int | 94.32 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 94.12 | |
| PLN03099 | 1232 | PIR Protein PIR; Provisional | 93.99 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 92.19 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 91.84 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 91.59 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 91.36 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 91.19 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 89.73 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 89.57 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 88.65 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 88.07 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 87.89 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 85.02 | |
| PRK02866 | 147 | cyanate hydratase; Validated | 83.73 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 83.37 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 83.07 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 81.79 | |
| TIGR00673 | 150 | cynS cyanate hydratase. Alternate names include cy | 80.65 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 80.17 |
| >KOG3534|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-253 Score=2077.46 Aligned_cols=676 Identities=72% Similarity=1.221 Sum_probs=659.4
Q ss_pred hhhccCCCCCHHHHHHH-HH--hcCCccchhhhhhhhhhhhhhhHHHHhhhhccccchhhhhccccccccccccccccee
Q psy7088 136 VANQFDDSVDWDDVRSL-VQ--ATKLPIVCKDSLQQCCDLSQLWYREFYLEMTMGRRIQKCVVRHQHNEECSDLITMEKR 212 (873)
Q Consensus 136 v~~~~d~sltWeDL~wL-R~--~t~lPl~lkgtl~~~~dls~LwfrEfyLe~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (873)
.+...|+ .+..+|+-+ |+ .|.-.++++.+|++|||||||||||||||||||| |
T Consensus 575 LRk~ldg-~~il~I~~Fhr~Sf~~~~L~n~SdtlqqccdLSQLWfREFyLEmTMGr-----------------------R 630 (1253)
T KOG3534|consen 575 LRKSLDG-PTILKIEVFHRKSFFWTHLLNFSDTLQQCCDLSQLWFREFYLEMTMGR-----------------------R 630 (1253)
T ss_pred hhhhcCC-chhhhHHHHHHhhhHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhhcc-----------------------c
Confidence 3333343 355666544 33 4888899999999999999999999999999999 9
Q ss_pred eecccCCchhHHHHHHhhhcCCCCcchhhccccccccchHHHHHHHHHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy7088 213 IQFPIEMSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYK 292 (873)
Q Consensus 213 iqFPIe~SlPwIL~~hiL~~~~~~l~e~ilypLdlYnDaA~~AL~~lk~q~LydEIeAEvnlcfdqlv~kls~~if~~yK 292 (873)
||||||||||||||||||++++|||||+++||||||||||+|||+.|+||||||||||||||||||||||||||||+|||
T Consensus 631 IQFPIEMSMPWILTDhIL~tkEpSmmE~vLY~LDLYNDsA~YaLt~F~KQFLYDEvEAEVNLCFDQFVYKLseqiFa~YK 710 (1253)
T KOG3534|consen 631 IQFPIEMSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTNFNKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYK 710 (1253)
T ss_pred eecchhccCchhhhhhHHhcCChhHHHHhhcchhcccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcChhhHHHHhhcccccccCCCCchHHHHHhhccceecccceehhHHHHHHHHHHHHHHHHHHHHhhhcCCcee
Q psy7088 293 QLAASMLLDKRFRVECMAMGTYLLAYPRANRYETLLRQRHVQLLGRSIDLNKLITQRINADMHKSLDLAISKFEHGDITG 372 (873)
Q Consensus 293 ~~Aas~lld~~~~~~~~~~~~~~~~~p~~~R~~~ll~Q~~v~lLGr~idl~~li~qr~n~~~~~~l~~~i~rfe~~~l~~ 372 (873)
++|+||+||||||+||...|+.+ ++|+++||||||+||||||||||||||+||+||+|+.|.|+||.||+||||.||+|
T Consensus 711 ~lAgs~lLDKRfraEc~~~G~~i-~~P~~nRyEtLLkQRHVQLLGRSiDLNrlitQRvnaam~Ksld~AI~rFEsedlts 789 (1253)
T KOG3534|consen 711 QLAGSMLLDKRFRAECKNSGTMI-RYPPSNRYETLLKQRHVQLLGRSIDLNRLITQRVNAAMYKSLDLAISRFESEDLTS 789 (1253)
T ss_pred HHhhhhhhhHHHHHHHHhcCeee-eCCCchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhhccCCchh
Confidence 99999999999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhhhHHHHHHHHHHHhhhcccCCcHHHHHHHhcccCCCccchhHHHHHHHhhcCcCcccccCCCcchHHHHHHHhhhc
Q psy7088 373 VVELEGLLAVNRLCHKLLSKLLGLDDYDAMLHEANHNVLAPYGRITLHIFWELNYDFLPNYCYNGATNRITLHIFWELNY 452 (873)
Q Consensus 373 ivel~~ll~i~r~tH~lL~~~l~Ld~F~~~l~e~n~~~~s~~~~i~~~~~~e~~~d~~~~y~~~~~~~rit~~vf~el~~ 452 (873)
|||||.|++++|+||++||.++.|||||+|++||||+ |++|| ||||+||||||||
T Consensus 790 IVELd~Lle~NRl~H~LLs~~l~ld~FD~mf~EANHn-------------------V~aPy------GRITLHVFwELNy 844 (1253)
T KOG3534|consen 790 IVELDGLLEINRLCHKLLSKYLTLDPFDAMFREANHN-------------------VSAPY------GRITLHVFWELNY 844 (1253)
T ss_pred hhhhHhHHHHHHHHHHHHHHHhccCchHHHHHHhccc-------------------cCCCC------ceeEEEEeeeecc
Confidence 9999999999999999999999999999999998888 45677 8999999999999
Q ss_pred CCccccccccCCccccccccccccccccccCCCCCcccccccchhHHHHHHHHHhhcccccChHHHHHHHHHhCCCCHHH
Q psy7088 453 DFLPNYCYNGATNRFIKCRGIMFTQQIHREKLPPMTHTYSWGSKQLNMAYYSIYGQYTGFVGAYHFRAMCRLLGYQGIAV 532 (873)
Q Consensus 453 d~~pnycyn~~t~rFvr~~~~~~~~~~~r~~~p~~~~~~~~g~~~l~~a~~~~~~~~~~f~g~~H~~a~~rLlg~~~i~~ 532 (873)
||+||||||++||||||++ ++|++++||+|||++++.|+||||+||+||++|++.|++|||.|||++|||||||||||+
T Consensus 845 DFlpNycYNgsTnRFvRt~-~~fsq~~qReKppq~~~~Yl~GSK~Ln~Ays~iy~~Y~~fvG~pHf~aicRLLgYQGIAV 923 (1253)
T KOG3534|consen 845 DFLPNYCYNGSTNRFVRTR-HPFSQEPQREKPPQVQPYYLWGSKSLNAAYSNIYGSYRNFVGPPHFKAICRLLGYQGIAV 923 (1253)
T ss_pred ccchhhhccCccchhhhhc-ccccccccccCCCCCCceEEecchHHHHHHHHHHHHHhcCCCcHHHHHHHHHhcccchHH
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcccccCCCCCCCCChhHHHHHHHhccccccCchhhHHHHHHHHhhhhHHHHHH
Q psy7088 533 VMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGYYHAQLNDIVQYPDAKTELFHNFRELGNTILFCL 612 (873)
Q Consensus 533 ~i~ell~~~~~~i~~~~~~yv~~l~~~mPk~~kLP~~dyGs~G~l~yy~~~L~~~~~Y~dLk~evfq~fREiGN~i~f~~ 612 (873)
||+||||+++++++++|.+||+++++.|||+|||||++|||+|+++||++||++|++||||||++||+|||+||+|+||+
T Consensus 924 vmdelLKivk~Llqg~ilq~vktl~~~MPKiCkLPR~eYGSpgiL~yy~h~L~div~Y~elKte~fQ~lRE~GN~I~FCl 1003 (1253)
T KOG3534|consen 924 VMDELLKIVKSLLQGTILQYVKTLMEVMPKICKLPRHEYGSPGILEYYHHHLKDIVEYPELKTEFFQSLREVGNAILFCL 1003 (1253)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCCccccCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhchHHHHhHhhhccCCCCCCCcccCCCCcchhhhhHHHhhhcccceeccccccCchHHHHHhhhcchhhhhhhcc
Q psy7088 613 LMEQALSQEEVCDLLHAAPFQNILPRPYCKEGEKPETKQKRLEQKYASLQIVSNIDRLGTAKQAMIAREGDLLTRERLCC 692 (873)
Q Consensus 613 lLd~aL~q~e~~~~~~aaPf~~iiP~~~~~~g~~~~~~~~~le~k~~~~~v~~~~~~~g~~~q~~~a~e~dll~~erl~~ 692 (873)
++||||+|||+||++|||||+||+|+|++|+||+++.|+|+||+||+++|+||.++++||++|+++|+|||+||||||||
T Consensus 1004 liEqaLsqEEvcDLlhAA~fqni~Pr~~~ke~e~~~~k~krLE~kya~lhlv~~iekigt~~Q~aIAregdLlTkERLCC 1083 (1253)
T KOG3534|consen 1004 LIEQALSQEEVCDLLHAAPFQNILPRPPAKEGERLEAKMKRLEAKYAPLHLVPLIEKIGTPQQAAIAREGDLLTKERLCC 1083 (1253)
T ss_pred HHHHHhhHHHHHHHHHhhhhccCCCCCccccchhHHHHHHHHHhhcCceeehhHHHHcCChHHhHHhhhhhhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhhcCCCCccCCCCCCCeeeeccccchHHHHHHhHhhhcccCCCCcchhHHhhcCcccchhHHHHHHh
Q psy7088 693 GLSIFEVVLNRLRGFLDDPIWVGPPPTNGVINIDECTEFHRLWSALQFVYCIPVGDTEFTVEELFGEGLNWAGCTMIVLL 772 (873)
Q Consensus 693 glsife~~L~ri~~~L~~~~W~g~~p~ngv~~id~~~eF~RlWSaLQF~~C~p~~~~~~~~~e~fGDGl~WaGctII~LL 772 (873)
|||+||.+|.||+++|+|++|.||||+||||+||||+||||+|||+|||||+|++.|++++||+||||++||||+||.||
T Consensus 1084 GLs~FEviL~Riks~L~DpiW~Gp~PtNGv~hvDECvEfhRlwSAlQFvyCiPv~~~E~t~Ee~FGdgL~WaGc~iIvLL 1163 (1253)
T KOG3534|consen 1084 GLSMFEVILTRIKSYLDDPIWRGPPPTNGVMHVDECVEFHRLWSALQFVYCIPVRTNEFTAEELFGDGLNWAGCTIIVLL 1163 (1253)
T ss_pred cHHHHHHHHHHHHHHhcCccccCCCCCCCeeeHHHHHHHHHHHHHhheEEEEecCCCeeeHHHHhCCccccccceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccceecchhhcccCCCcccccccHHHHHHHHHHHHHhhhHHHHHHhhhhCCCCCCccccccccccCCCCCc
Q psy7088 773 GQQRRFEALDFCYHILRVQRVDGRDENVKGIHLKRMVDRIRRFQVVNSQIFATLNKYLGSSDADAASVEHVRCFPPPIHP 852 (873)
Q Consensus 773 gQq~rFe~lDF~yhil~V~~~d~~~~~~~g~~l~~~~~~~~~~~~lN~~iFs~L~~~~~~~~~~~~~~~~v~~~~pp~~~ 852 (873)
|||||||+||||||++||+++||||+.++|++|++|||||||||+||||||+||++|+++++++++|+||||||+||+||
T Consensus 1164 GQqRRFevlDFCYHllrVqk~DGKDEiik~i~LkkMveRIRrfQiLNnqif~IL~kylk~ge~~~~~vEhVRcF~PPiH~ 1243 (1253)
T KOG3534|consen 1164 GQQRRFEVLDFCYHLLRVQKADGKDEIIKGIPLKKMVERIRRFQILNNQIFIILNKYLKSGEGEGSPVEHVRCFQPPIHP 1243 (1253)
T ss_pred cchhhhHHHHHHHHHHHHhhccCchhhhcCCcHHHHHHHHHHHHHHhhHHHHHHHHHhccCCCCCCchhheeccCCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcCCC
Q psy7088 853 SLAQQHGHYY 862 (873)
Q Consensus 853 ~~~~~~~~~~ 862 (873)
|++++++|++
T Consensus 1244 s~as~~a~~q 1253 (1253)
T KOG3534|consen 1244 SLASSAARRQ 1253 (1253)
T ss_pred hhhhhhhccC
Confidence 9999999985
|
|
| >PLN03099 PIR Protein PIR; Provisional | Back alignment and domain information |
|---|
| >PF05994 FragX_IP: Cytoplasmic Fragile-X interacting family; InterPro: IPR008081 Cytoplasmic fragile X mental retardation protein (FMRP) interacting protein belongs to a highly conserved but, as yet, functionally uncharacterised family | Back alignment and domain information |
|---|
| >KOG0538|consensus | Back alignment and domain information |
|---|
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
| >COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
| >KOG3534|consensus | Back alignment and domain information |
|---|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
| >PF05994 FragX_IP: Cytoplasmic Fragile-X interacting family; InterPro: IPR008081 Cytoplasmic fragile X mental retardation protein (FMRP) interacting protein belongs to a highly conserved but, as yet, functionally uncharacterised family | Back alignment and domain information |
|---|
| >PF09735 Nckap1: Membrane-associated apoptosis protein; InterPro: IPR019137 Nck-associated protein 1 is part of lamellipodial complex that controls Rac-dependent actin remodeling | Back alignment and domain information |
|---|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PLN03099 PIR Protein PIR; Provisional | Back alignment and domain information |
|---|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
| >PRK02866 cyanate hydratase; Validated | Back alignment and domain information |
|---|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
| >TIGR00673 cynS cyanate hydratase | Back alignment and domain information |
|---|
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 873 | ||||
| 3p8c_A | 1253 | Structure And Control Of The Actin Regulatory Wave | 0.0 | ||
| 2w0u_A | 370 | Crystal Structure Of Human Glycolate Oxidase In Com | 9e-31 | ||
| 2nzl_A | 392 | Crystal Structure Of Human Hydroxyacid Oxidase 1 Le | 1e-30 | ||
| 2rdt_A | 387 | Crystal Structure Of Human Glycolate Oxidase (Go) I | 1e-30 | ||
| 1al7_A | 359 | Three-Dimensional Structures Of Glycolate Oxidase W | 4e-25 | ||
| 1gyl_A | 369 | Involvement Of Tyr24 And Trp108 In Substrate Bindin | 5e-25 | ||
| 1gox_A | 370 | Refined Structure Of Spinach Glycolate Oxidase At 2 | 5e-25 | ||
| 1tb3_A | 352 | Crystal Structure Analysis Of Recombinant Rat Kidne | 2e-18 | ||
| 3sgz_A | 352 | High Resolution Crystal Structure Of Rat Long Chain | 2e-18 | ||
| 2cdh_0 | 226 | Architecture Of The Thermomyces Lanuginosus Fungal | 1e-16 | ||
| 1ldc_A | 511 | X-Ray Structure Of Two Complexes Of The Y143f Flavo | 6e-12 | ||
| 1fcb_A | 511 | Molecular Structure Of Flavocytochrome B2 At 2.4 An | 7e-12 | ||
| 2oz0_A | 511 | Mechanistic And Structural Studies Of H373q Flavocy | 7e-12 | ||
| 1ltd_A | 506 | The 2.6 Angstroms Refined Structure Of The Escheric | 8e-12 | ||
| 1sze_A | 511 | L230a Mutant Flavocytochrome B2 With Benzoylformate | 1e-11 | ||
| 1kbj_A | 412 | Crystallographic Study Of The Recombinant Flavin-Bi | 1e-11 | ||
| 2j6x_A | 374 | The Crystal Structure Of Lactate Oxidase Length = 3 | 3e-11 | ||
| 2du2_A | 374 | Crystal Structure Analysis Of The L-Lactate Oxidase | 3e-11 | ||
| 2nli_A | 368 | Crystal Structure Of The Complex Between L-Lactate | 3e-11 | ||
| 1qcw_A | 410 | Flavocytochrome B2, Arg289lys Mutant Length = 410 | 3e-11 | ||
| 1szf_A | 511 | A198g:l230a Mutant Flavocytochrome B2 With Pyruvate | 4e-11 | ||
| 2a7n_A | 380 | Crystal Structure Of The G81a Mutant Of The Active | 2e-09 | ||
| 1huv_A | 380 | Crystal Structure Of A Soluble Mutant Of The Membra | 4e-09 |
| >pdb|3P8C|A Chain A, Structure And Control Of The Actin Regulatory Wave Complex Length = 1253 | Back alignment and structure |
|
| >pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]- 1,2,3-Thiadiazole-4-Carboxylate. Length = 370 | Back alignment and structure |
| >pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1 Length = 392 | Back alignment and structure |
| >pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In Complex With Cdst Length = 387 | Back alignment and structure |
| >pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With Bound Active- Site Inhibitors Length = 359 | Back alignment and structure |
| >pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And Substrate Specificity Of Glycolate Oxidase Length = 369 | Back alignment and structure |
| >pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2 Angstroms Resolution Length = 370 | Back alignment and structure |
| >pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long- Chain Hydroxy Acid Oxidase Length = 352 | Back alignment and structure |
| >pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain Hydroxy Acid Oxidase In Complex With The Inhibitor 4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2, 3-Thiadiazole. Length = 352 | Back alignment and structure |
| >pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty Acid Synthase At 5 Angstrom Resolution. Length = 226 | Back alignment and structure |
| >pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f Flavocytochrome B2 Mutant Crystallized In The Presence Of Lactate Or Phenyl-Lactate Length = 511 | Back alignment and structure |
| >pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms Resolution Length = 511 | Back alignment and structure |
| >pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q Flavocytochrome B2: Effects Of Mutating The Active Site Base Length = 511 | Back alignment and structure |
| >pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia Coli Recombinant Saccharomyces Cerevisiae Flavocytochrome B2-Sulphite Complex Length = 506 | Back alignment and structure |
| >pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate Length = 511 | Back alignment and structure |
| >pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding Domain Of Baker's Yeast Flavocytochrome B2: Comparison With The Intact Wild- Type Enzyme Length = 412 | Back alignment and structure |
| >pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase Length = 374 | Back alignment and structure |
| >pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase Length = 374 | Back alignment and structure |
| >pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase And A Substrate Analogue At 1.59 Angstrom Resolution Length = 368 | Back alignment and structure |
| >pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant Length = 410 | Back alignment and structure |
| >pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound Length = 511 | Back alignment and structure |
| >pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera Of (S)- Mandelate Dehydrogenase Length = 380 | Back alignment and structure |
| >pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The Membrane-Associated (S)- Mandelate Dehydrogenase From Pseudomonas Putida At 2.15a Resolution Length = 380 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens} Length = 1253 | Back alignment and structure |
|---|
Score = 932 bits (2410), Expect = 0.0
Identities = 448/692 (64%), Positives = 537/692 (77%), Gaps = 50/692 (7%)
Query: 164 DSLQQCCDLSQLWYREFYLEMTMGRRIQKCVVRHQHNEECSDLITMEKRIQFPIEMSMPW 223
++LQQCCDLSQLW+REF+LE+TMGRRIQ FPIEMSMPW
Sbjct: 610 ETLQQCCDLSQLWFREFFLELTMGRRIQ-----------------------FPIEMSMPW 646
Query: 224 ILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKL 283
ILTDHIL+TKE SMMEYVLY LDLYNDSAHYALT F KQFLYDE+EAEVNLCFDQFVYKL
Sbjct: 647 ILTDHILETKEASMMEYVLYSLDLYNDSAHYALTRFNKQFLYDEIEAEVNLCFDQFVYKL 706
Query: 284 SEQIFAHYKQLAASMLLDKRFRVECMAMGTYLLAYPRANRYETLLRQRHVQLLGRSIDLN 343
++QIFA+YK +A S+LLDKR R EC G + P +NRYETLL+QRHVQLLGRSIDLN
Sbjct: 707 ADQIFAYYKVMAGSLLLDKRLRSECKNQGATIH-LPPSNRYETLLKQRHVQLLGRSIDLN 765
Query: 344 KLITQRINADMHKSLDLAISKFEHGDITGVVELEGLLAVNRLCHKLLSKLLGLDDYDAML 403
+LITQR++A M+KSL+LAI +FE D+T +VEL+GLL +NR+ HKLLS+ L LD +DAM
Sbjct: 766 RLITQRVSAAMYKSLELAIGRFESEDLTSIVELDGLLEINRMTHKLLSRYLTLDGFDAMF 825
Query: 404 HEANHNVLAPYGRITLHIFWELNYDFLPNYCYNGATNRITLHIFWELNYDFLPNYCYNGA 463
EANHNV APYGRITLH+FWELNYDFLPNYCYNG+TNR
Sbjct: 826 REANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNR---------------------- 863
Query: 464 TNRFIKCRGIMFTQQIHREKLPPMTHTYSWGSKQLNMAYYSIYGQYTGFVGAYHFRAMCR 523
F++ + F+Q+ R+K P Y GSK LN+AY SIYG Y FVG HF+ +CR
Sbjct: 864 ---FVRTV-LPFSQEFQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICR 919
Query: 524 LLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGYYHAQ 583
LLGYQGIAVVMEELLK+V SL+QG++LQ+ KTLM+ MPK C+LPR++YGSPG+L ++H Q
Sbjct: 920 LLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQ 979
Query: 584 LNDIVQYPDAKTELFHNFRELGNTILFCLLMEQALSQEEVCDLLHAAPFQNILPRPYCKE 643
L DIV+Y + KT F N RE+GN ILFCLL+EQ+LS EEVCDLLHAAPFQNILPR + KE
Sbjct: 980 LKDIVEYAELKTVCFQNLREVGNAILFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKE 1039
Query: 644 GEKPETKQKRLEQKYASLQIVSNIDRLGTAKQAMIAREGDLLTRERLCCGLSIFEVVLNR 703
GE+ + K KRLE KYA L +V I+RLGT +Q IAREGDLLT+ERLCCGLS+FEV+L R
Sbjct: 1040 GERLDAKMKRLESKYAPLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTR 1099
Query: 704 LRGFLDDPIWVGPPPTNGVINIDECTEFHRLWSALQFVYCIPVGDTEFTVEELFGEGLNW 763
+R FLDDPIW GP P+NGV+++DEC EFHRLWSA+QFVYCIPVG EFTVE+ FG+GL+W
Sbjct: 1100 IRSFLDDPIWRGPLPSNGVMHVDECVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHW 1159
Query: 764 AGCTMIVLLGQQRRFEALDFCYHILRVQRVDGRDENVKGIHLKRMVDRIRRFQVVNSQIF 823
AGC +IVLLGQQRRF LDFCYH+L+VQ+ DG+DE +K + LK+MV+RIR+FQ++N +I
Sbjct: 1160 AGCMIIVLLGQQRRFAVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEII 1219
Query: 824 ATLNKYLGSSDADAASVEHVRCFPPPIHPSLA 855
L+KYL S D + VEHVRCF PPIH SLA
Sbjct: 1220 TILDKYLKSGDGEGTPVEHVRCFQPPIHQSLA 1251
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* Length = 392 | Back alignment and structure |
|---|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* Length = 368 | Back alignment and structure |
|---|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* Length = 352 | Back alignment and structure |
|---|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 Length = 370 | Back alignment and structure |
|---|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* Length = 380 | Back alignment and structure |
|---|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Length = 511 | Back alignment and structure |
|---|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} Length = 365 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Length = 349 | Back alignment and structure |
|---|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* Length = 368 | Back alignment and structure |
|---|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Length = 332 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 873 | |||
| 3p8c_A | 1253 | Cytoplasmic FMR1-interacting protein 1; actin poly | 100.0 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 100.0 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 99.96 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 99.96 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 99.95 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 99.94 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 99.94 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 99.44 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 99.27 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 99.24 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 99.18 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 99.13 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 98.71 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 98.35 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 98.29 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 98.26 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 98.07 | |
| 3p8c_A | 1253 | Cytoplasmic FMR1-interacting protein 1; actin poly | 97.41 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 97.3 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 96.99 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 96.88 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 96.43 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 96.38 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 94.3 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 94.15 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 88.98 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 88.34 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 83.28 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 82.61 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 81.37 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 80.88 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 80.63 |
| >3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-228 Score=2020.69 Aligned_cols=666 Identities=67% Similarity=1.168 Sum_probs=638.1
Q ss_pred CCCCHHHHHHHHHh------cCCccchhhhhhhhhhhhhhhHHHHhhhhccccchhhhhcccccccccccccccceeeec
Q psy7088 142 DSVDWDDVRSLVQA------TKLPIVCKDSLQQCCDLSQLWYREFYLEMTMGRRIQKCVVRHQHNEECSDLITMEKRIQF 215 (873)
Q Consensus 142 ~sltWeDL~wLR~~------t~lPl~lkgtl~~~~dls~LwfrEfyLe~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iqF 215 (873)
..++=+|++.|+.- |.--|+++.||++|||||+||||||||||+||| +|||
T Consensus 582 k~l~~~~~~~i~~F~~~s~~~~~LL~~~~tl~~~~DLS~LWfREfyLElt~~~-----------------------~iQF 638 (1253)
T 3p8c_A 582 SSLEGPTILDIEKFHRESFFYTHLINFSETLQQCCDLSQLWFREFFLELTMGR-----------------------RIQF 638 (1253)
T ss_dssp TTSCHHHHHHHHHHHHHGGGHHHHHTHHHHHHHHSCCGGGSCCHHHHHHTTTS-----------------------CSSC
T ss_pred ccCCHhHHHHHHHHHHHhccHHHHhchHHHHHHhhhHHHHHHHHHHHhhccCc-----------------------eEEe
Confidence 34566777776643 666799999999999999999999999999987 9999
Q ss_pred ccCCchhHHHHHHhhhcCCCCcchhhccccccccchHHHHHHHHHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy7088 216 PIEMSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLA 295 (873)
Q Consensus 216 PIe~SlPwIL~~hiL~~~~~~l~e~ilypLdlYnDaA~~AL~~lk~q~LydEIeAEvnlcfdqlv~kls~~if~~yK~~A 295 (873)
|||||||||||||||++++|+|+|+||||||||||||++||++|||||||||||||||||||||||||||+||+|||++|
T Consensus 639 PIe~SLPWILtdhiL~s~~~~l~E~ilyPLdlYNDAA~~AL~~lk~qfLYDEIEAEvnLCfDqlv~kLSd~iF~~yK~~A 718 (1253)
T 3p8c_A 639 PIEMSMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTRFNKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKVMA 718 (1253)
T ss_dssp CGGGCHHHHHHHHHHHHTCGGGTTTHHHHHTHHHHHHHHHHHTSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCchHHHHHHHHccCCchhHHHHhcchhHHhHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcChhhHHHHhhcccccccCCCCchHHHHHhhccceecccceehhHHHHHHHHHHHHHHHHHHHHhhhcCCceeehh
Q psy7088 296 ASMLLDKRFRVECMAMGTYLLAYPRANRYETLLRQRHVQLLGRSIDLNKLITQRINADMHKSLDLAISKFEHGDITGVVE 375 (873)
Q Consensus 296 as~lld~~~~~~~~~~~~~~~~~p~~~R~~~ll~Q~~v~lLGr~idl~~li~qr~n~~~~~~l~~~i~rfe~~~l~~ive 375 (873)
||++|||+||+||++.|.++ ++|+++||++|||||||||||||||||+||+||||++|+++||.||+||||+|||||||
T Consensus 719 as~lLD~~f~~e~~~~~~~~-~~p~~~Ry~~ll~QrhvqLLGRsIDL~~LI~QRln~~~~~~Le~aI~rFEs~dL~~ive 797 (1253)
T 3p8c_A 719 GSLLLDKRLRSECKNQGATI-HLPPSNRYETLLKQRHVQLLGRSIDLNRLITQRVSAAMYKSLELAIGRFESEDLTSIVE 797 (1253)
T ss_dssp HHHTSCHHHHHHHHHTTCCC-CCCCCCCCHHHHTCSCEEETTEEECHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGHHH
T ss_pred HHHhcCHHHHHHHhhccccc-cCCchhhHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHH
Confidence 99999999999999989888 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhcccCCcHHHHHHHhcccCCCccchhHHHHHHHhhcCcCcccccCCCcchHHHHHHHhhhcCCc
Q psy7088 376 LEGLLAVNRLCHKLLSKLLGLDDYDAMLHEANHNVLAPYGRITLHIFWELNYDFLPNYCYNGATNRITLHIFWELNYDFL 455 (873)
Q Consensus 376 l~~ll~i~r~tH~lL~~~l~Ld~F~~~l~e~n~~~~s~~~~i~~~~~~e~~~d~~~~y~~~~~~~rit~~vf~el~~d~~ 455 (873)
||++|+|+|.||++|+++++|||||+||+||||+++| || ||||.||||||+|||+
T Consensus 798 Le~ll~i~r~tH~LLse~l~Ld~F~~ml~Ean~~vss-------------------~~------gRIt~hv~~eL~~Df~ 852 (1253)
T 3p8c_A 798 LDGLLEINRMTHKLLSRYLTLDGFDAMFREANHNVSA-------------------PY------GRITLHVFWELNYDFL 852 (1253)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHTTCSSS-------------------SS------CHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhccCCCC-------------------cc------hhHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999988544 44 7788888888888889
Q ss_pred cccccccCCccccccccccccccccccCCCCCcccccccchhHHHHHHHHHhhcccccChHHHHHHHHHhCCCCHHHHHH
Q psy7088 456 PNYCYNGATNRFIKCRGIMFTQQIHREKLPPMTHTYSWGSKQLNMAYYSIYGQYTGFVGAYHFRAMCRLLGYQGIAVVME 535 (873)
Q Consensus 456 pnycyn~~t~rFvr~~~~~~~~~~~r~~~p~~~~~~~~g~~~l~~a~~~~~~~~~~f~g~~H~~a~~rLlg~~~i~~~i~ 535 (873)
||||||++||||||++ ++|+++++|++||+++++++||||.||+||++++++|++|||.|||+||||||||+|||+||+
T Consensus 853 PNy~yn~~T~RFvr~~-~~~~~~~~R~~~P~~~~~~~~Gsk~ln~A~~~~~~~~~~FvG~~H~~ai~rLlg~~~l~~vi~ 931 (1253)
T 3p8c_A 853 PNYCYNGSTNRFVRTV-LPFSQEFQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVME 931 (1253)
T ss_dssp HHEEEETTTTEEEECC-GGGCCCCCCCCCCCCCGGGTTSSHHHHHHHHHHGGGGGSCBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceecCccccccCCC-ccccCcccCCCCCCCcchhhhchHHHHHHHHHHHhhcccccChHHHHHHHHHhCCCChHHHHH
Confidence 9999999999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhcccccCCCCCCCCChhHHHHHHHhccccccCchhhHHHHHHHHhhhhHHHHHHHHH
Q psy7088 536 ELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGYYHAQLNDIVQYPDAKTELFHNFRELGNTILFCLLME 615 (873)
Q Consensus 536 ell~~~~~~i~~~~~~yv~~l~~~mPk~~kLP~~dyGs~G~l~yy~~~L~~~~~Y~dLk~evfq~fREiGN~i~f~~lLd 615 (873)
||||+++++|+++++|||++++++|||+||||++||||+|||+||++||+|+++|||||+||||+||||||+|+||++||
T Consensus 932 ell~~~~~~i~~~~~~yv~~l~~~mPk~~klP~~dyGs~G~~~~y~~~L~~~~~y~dlk~ev~q~fReiGN~i~f~~lLd 1011 (1253)
T 3p8c_A 932 ELLKVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCFQNLREVGNAILFCLLIE 1011 (1253)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHSCSBCCCCCGGGCHHHHHHHHHHHTHHHHSCTTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchhhCCCCccCCchHHHHHHHHHHhhHhcChHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhchHHHHhHhhhccCCCCCCCcccCCCCcchhhhhHHHhhhcccceeccccccCchHHHHHhhhcchhhhhhhccCch
Q psy7088 616 QALSQEEVCDLLHAAPFQNILPRPYCKEGEKPETKQKRLEQKYASLQIVSNIDRLGTAKQAMIAREGDLLTRERLCCGLS 695 (873)
Q Consensus 616 ~aL~q~e~~~~~~aaPf~~iiP~~~~~~g~~~~~~~~~le~k~~~~~v~~~~~~~g~~~q~~~a~e~dll~~erl~~gls 695 (873)
++|+|+|++||+|||||+|++|++++++||+++.|+++||+||+++++++.++++|+++|+.+|+|||+|||||||||||
T Consensus 1012 ~aL~q~e~~~~~~aaPf~gi~P~~~~~~~~~~~~k~~~l~~k~~~~~~v~~~~~~~~~~q~~~a~eadlL~k~rl~~glS 1091 (1253)
T 3p8c_A 1012 QSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKYAPLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLS 1091 (1253)
T ss_dssp HHHHHHHHHHHHHHGGGGTCCCCCCCCTTCCHHHHHHHHHHHTGGGCHHHHHHHHSCHHHHHHHHHHHHHHHCCGGGTEE
T ss_pred HHhhHHHHHHHHhhccccCCCCCCCCCcccccchhhHHHHhccCccccchHHhhcCcHHHHHHHHHHHHHhhhhhcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCccCCCCCCCeeeeccccchHHHHHHhHhhhcccCCCCcchhHHhhcCcccchhHHHHHHhccc
Q psy7088 696 IFEVVLNRLRGFLDDPIWVGPPPTNGVINIDECTEFHRLWSALQFVYCIPVGDTEFTVEELFGEGLNWAGCTMIVLLGQQ 775 (873)
Q Consensus 696 ife~~L~ri~~~L~~~~W~g~~p~ngv~~id~~~eF~RlWSaLQF~~C~p~~~~~~~~~e~fGDGl~WaGctII~LLgQq 775 (873)
|||++|+|+|++|++++|+|++|.||||+||||+|||||||||||+||+|+++|+++++|+||||++|||||||+|||||
T Consensus 1092 ife~~L~~~~~~L~~~~W~g~~P~nGvi~id~~~eF~RlwSalQf~~c~p~~~~e~~~~e~FGDgl~WaGctiI~LLGQq 1171 (1253)
T 3p8c_A 1092 MFEVILTRIRSFLDDPIWRGPLPSNGVMHVDECVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQ 1171 (1253)
T ss_dssp SHHHHHHHHHTTCCSTTTTCSCCTTSSCCSSBCCSHHHHHHHHHHHHHSCCCTTSCCHHHHHBTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCccccCCCCCCCCeEeeecchhHHHHHHHHHHhhcccCCCCCCcHHHHhcCccchhHHHHHHHhcch
Confidence 99999999999999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceecchhhcccCCCcccccccHHHHHHHHHHHHHhhhHHHHHHhhhhCCCCCCccccccccccCCCCCcchh
Q psy7088 776 RRFEALDFCYHILRVQRVDGRDENVKGIHLKRMVDRIRRFQVVNSQIFATLNKYLGSSDADAASVEHVRCFPPPIHPSLA 855 (873)
Q Consensus 776 ~rFe~lDF~yhil~V~~~d~~~~~~~g~~l~~~~~~~~~~~~lN~~iFs~L~~~~~~~~~~~~~~~~v~~~~pp~~~~~~ 855 (873)
+|||+||||||||||+++|+||+.+.|++|++|++||||||+|||||||||++|||++|.+++|+||||||+||+|||++
T Consensus 1172 ~rFE~lDF~YHiL~V~~~d~k~~~~~g~~l~~~~~~~r~~~~LN~~iFs~L~~~~~~~~~~~~~~~~vr~f~pp~~~~~~ 1251 (1253)
T 3p8c_A 1172 RRFAVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEGTPVEHVRCFQPPIHQSLA 1251 (1253)
T ss_dssp HHHHHHCHHHHHHHHHHHHCCCCEETTEEHHHHHHHHHHHHHHHHHHHHHHHHHTC---------CCCCCCCCCCCTTC-
T ss_pred hhhhHhhhHHHHhHHHHhhcccccccCccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCcccccccCCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hh
Q psy7088 856 QQ 857 (873)
Q Consensus 856 ~~ 857 (873)
++
T Consensus 1252 ~~ 1253 (1253)
T 3p8c_A 1252 SS 1253 (1253)
T ss_dssp --
T ss_pred cC
Confidence 53
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
| >3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 873 | ||||
| d1kbia1 | 414 | c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal | 1e-15 | |
| d1goxa_ | 359 | c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia | 4e-15 | |
| d1tb3a1 | 349 | c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus | 1e-14 | |
| d1p0ka_ | 329 | c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomera | 5e-14 | |
| d1vcfa1 | 310 | c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-i | 1e-12 | |
| d1p4ca_ | 353 | c.1.4.1 (A:) Membrane-associated (S)-mandelate deh | 1e-09 |
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 414 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.7 bits (190), Expect = 1e-15
Identities = 50/236 (21%), Positives = 96/236 (40%), Gaps = 17/236 (7%)
Query: 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAH---ADGEVATARAAGMMDAIMILSLM 57
+ +V D +LG+ P ++ +A+ KL + + +VA G+ ++S +
Sbjct: 74 LVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTL 133
Query: 58 STTSLEEVR--AQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRY 115
++ S EE+ A + W Q+Y+ DR ++ +V+ E+ G A+ +T+D LG R
Sbjct: 134 ASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQRE 193
Query: 116 H-----------ISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKD 164
K + E S G + ++ D S+ W D+ L + TKLPIV K
Sbjct: 194 KDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKG 253
Query: 165 SLQQCCDLSQLWYR-EFYLEMTMGRRIQKCVVRHQHNEECSDLITMEKRIQFPIEM 219
+ + + G R + I ++ ++ +E+
Sbjct: 254 VQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEV 309
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 359 | Back information, alignment and structure |
|---|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 349 | Back information, alignment and structure |
|---|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Length = 329 | Back information, alignment and structure |
|---|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Length = 310 | Back information, alignment and structure |
|---|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 353 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 873 | |||
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 99.96 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 99.94 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 99.92 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 99.87 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 99.58 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 99.36 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 94.19 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 85.89 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 82.56 |
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.96 E-value=2.2e-30 Score=280.67 Aligned_cols=263 Identities=25% Similarity=0.336 Sum_probs=193.5
Q ss_pred CCCCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEe
Q psy7088 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYI 80 (873)
Q Consensus 1 LrdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~ 80 (873)
|+|++++||+|+|||+++++||+|||+++.++.|+++|.++||||+++|++|++||.++.++|+|.++.+++++|||+|+
T Consensus 51 L~d~~~idlst~~lG~~l~~P~~Iapmtgg~~~~~~~~~~lA~aA~~~g~~~~~~s~s~~~~e~v~~~~~~~~~~~ql~~ 130 (349)
T d1tb3a1 51 LRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYM 130 (349)
T ss_dssp SSCCSSCBCCEEETTEEESSSEEECCCSCGGGTCTTTHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHSTTCCEEEECCC
T ss_pred ccCCCCCCCceeECCcCccceEEEcchhcccccccchhhHHHHhhhhcccceeecccccccchhhhhhccCCCeeeeeec
Confidence 68999999999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeeccCccCccccccc--cccccc----c----cccCcchhhhhhccCCCCCHHHHH
Q psy7088 81 FKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISK--FRDISA----E----ECSSGLTDYVANQFDDSVDWDDVR 150 (873)
Q Consensus 81 ~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~--f~~~~~----~----~~~~~~~~~v~~~~d~sltWeDL~ 150 (873)
++|++.++++++|++++|++++++|||+|+.|+|++|.+ |..... . ..............+++++|+|++
T Consensus 131 ~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 210 (349)
T d1tb3a1 131 KSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKEEKPTQSVPVSFPKASFCWNDLS 210 (349)
T ss_dssp CSCTTHHHHHHHHHHHHTCCCEEEECSCSSCCCCHHHHHTTCCCCC----CCSCCCCC-------------CCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCcccccccCchhhcchhhhhhccccCCcccchhhhhhhhhccccccccccccCCCCCHHHHH
Confidence 999999999999999999999999999999999998742 211000 0 000000011223456789999999
Q ss_pred HHHHhcCCccchhhhhhhh--hhhhhhhHHHHhhhhccccchh--------hhhcccccccccccccccceeeecccCCc
Q psy7088 151 SLVQATKLPIVCKDSLQQC--CDLSQLWYREFYLEMTMGRRIQ--------KCVVRHQHNEECSDLITMEKRIQFPIEMS 220 (873)
Q Consensus 151 wLR~~t~lPl~lkgtl~~~--~dls~LwfrEfyLe~~~g~~~~--------~~~~~~~~~~~~~~~~~~~~~iqFPIe~S 220 (873)
|||+.|++|+++||+++.. ...-..-..=.++.-..||..+ ...++..+..++..+++.|-|----
T Consensus 211 ~l~~~~~~pii~Kgi~~~~da~~a~~~G~d~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~D---- 286 (349)
T d1tb3a1 211 LLQSITRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTD---- 286 (349)
T ss_dssp HHHTTCCSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTSSCSBCCHHHHHHHHHHHHTTSSEEEEESSCCSHHH----
T ss_pred HHHHhcCCCcccchhhhhHHHHHHHHhhccceeeeccccccccccccchhhcceeeeccCCCeeEEeccCcCcHHH----
Confidence 9999999999999998761 1111111122233334343222 2244455555566666666665555
Q ss_pred hhHHHHHHhhhcCCCCcchhhccccccc-cchHHHHHHHHHhhhhHHHHHHHHhhH
Q psy7088 221 MPWILTDHILKTKEPSMMEYVLYPLDLY-NDSAHYALTVFRKQFLYDEVEAEVNLC 275 (873)
Q Consensus 221 lPwIL~~hiL~~~~~~l~e~ilypLdlY-nDaA~~AL~~lk~q~LydEIeAEvnlc 275 (873)
|+.--+|..+--.+-.+++|.|..+ .++...+++.++ +|++.-+-+|
T Consensus 287 ---v~KALALGA~~V~igrp~L~~la~~G~~gv~~~l~~l~-----~EL~~~M~l~ 334 (349)
T d1tb3a1 287 ---VLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILT-----AELHRCMTLS 334 (349)
T ss_dssp ---HHHHHHTTCSCEEESHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred ---HHHHHHcCCCEEEEChHHHHHHHhccHHHHHHHHHHHH-----HHHHHHHHHh
Confidence 6777777777777888999987654 566677777666 4555544443
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|