Psyllid ID: psy7097

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60---
Protein Sequence
MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILRYTVN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHHHHHHcccccccEEEEEEccccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEEEcccccEEEEEEEcc
Coil and Loop (DISEMBL)
mykdlnkntgdaidysqmkreNIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILRYTVN
Flexible Loop (DISEMBL)
mykdlnkntgdaidysqmkreNIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILRYTVN
Low Complexity Region (SEG)
MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILRYTVN
Disordered region (IsUnstruct)
*********************NIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILRYT**
Disordered Region (DISOPRED)
M******NTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILRYTVN
Disordered Region (DISEMBL)
********TGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILRYTVN
Disordered Region (DISPRO)
*Y***NKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILRYTVN
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILRYTVN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	63	2.2.26 [Sep-21-2011]
Q9DAK2	241	Parkin coregulated gene p	yes	N/A	0.920	0.240	0.706	5e-20
Q96M98	296	Parkin coregulated gene p	no	N/A	0.809	0.172	0.725	2e-17

>sp|Q9DAK2|PACRG_MOUSE Parkin coregulated gene protein homolog OS=Mus musculus GN=Pacrg PE=1 SV=1

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/58 (70%), Positives = 51/58 (87%)

Query: 1   MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 58
           ++K++N N+GD IDYSQ KRENIGDL+QETL+  ER+GGEDA I IKYM+PTYESC+L
Sbjct: 183 IFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGEDAFINIKYMVPTYESCLL 240

Suppresses cell death induced by accumulation of unfolded Pael receptor (Pael-R, a substrate of Parkin). Facilitates the formation of inclusions consisting of Pael-R, molecular chaperones, protein degradation molecules and itself when proteasome is inhibited.
Mus musculus (taxid: 10090)

>sp|Q96M98|PACRG_HUMAN Parkin coregulated gene protein OS=Homo sapiens GN=PACRG PE=1 SV=2

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/51 (72%), Positives = 45/51 (88%)

Query: 8   NTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 58
           N+GD IDYSQ KRENIGDL+QETL+  ER+GGE+A I IKY++PTYESC+L
Sbjct: 245 NSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLL 295

Suppresses cell death induced by accumulation of unfolded Pael receptor (Pael-R, a substrate of Parkin). Facilitates the formation of inclusions consisting of Pael-R, molecular chaperones, protein degradation molecules and itself when proteasome is inhibited. May play an important role in the formation of Lewy bodies and protection of dopaminergic neurons against Parkinson disease.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	63
55925315	232	parkin co-regulated gene protein [Danio	0.920	0.25	0.724	1e-19
410960331	257	PREDICTED: parkin coregulated gene prote	0.920	0.225	0.724	2e-19
198433524	229	PREDICTED: similar to parkin co-regulate	0.920	0.253	0.724	2e-19
389581661	240	PACRG, partial [Xenopus laevis]	0.920	0.241	0.724	3e-19
340375228	239	PREDICTED: parkin coregulated gene prote	0.920	0.242	0.775	4e-19
261289807	221	hypothetical protein BRAFLDRAFT_99083 [B	0.920	0.262	0.724	5e-19
163915233	240	uncharacterized protein LOC100127543 [Xe	0.920	0.241	0.724	6e-19
326675661	170	PREDICTED: parkin coregulated gene prote	0.920	0.341	0.724	6e-19
117940039	302	Park2 co-regulated [Rattus norvegicus] g	0.920	0.192	0.706	6e-19
291228567	236	PREDICTED: hypothetical protein [Saccogl	0.920	0.245	0.724	7e-19

>gi|55925315|ref|NP_001007399.1| parkin co-regulated gene protein [Danio rerio] gi|55250310|gb|AAH85440.1| Zgc:101786 [Danio rerio] gi|182889412|gb|AAI65063.1| Zgc:101786 protein [Danio rerio]

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/58 (72%), Positives = 53/58 (91%)

Query: 1   MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 58
           ++K++NKN+GD IDYSQ KRENIGDL+QETL++ ER+GGEDA I IKYM+PTYESC+L
Sbjct: 174 IFKNMNKNSGDGIDYSQQKRENIGDLIQETLEVFERYGGEDAFINIKYMVPTYESCLL 231

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410960331|ref|XP_003986746.1| PREDICTED: parkin coregulated gene protein [Felis catus]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/58 (72%), Positives = 53/58 (91%)

Query: 1   MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 58
           ++K++N N+GD IDYSQ KRENIGDL+QETL++LER+GGEDA I IKYM+PTYESC+L
Sbjct: 199 IFKNMNVNSGDGIDYSQQKRENIGDLIQETLEVLERYGGEDAFINIKYMVPTYESCLL 256

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|198433524|ref|XP_002131225.1| PREDICTED: similar to parkin co-regulated gene protein [Ciona intestinalis]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/58 (72%), Positives = 51/58 (87%)

Query: 1   MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 58
           ++K+ N+N+GD IDYSQ KRENIGDL+QETL+  ERHGGEDA I IKYM+PTYESC+L
Sbjct: 171 IFKNSNRNSGDGIDYSQQKRENIGDLIQETLEAFERHGGEDAFINIKYMVPTYESCML 228

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|389581661|gb|AFK87745.1| PACRG, partial [Xenopus laevis]

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/58 (72%), Positives = 51/58 (87%)

Query: 1   MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 58
           ++K++N N+GD IDYSQ KRENIGDL+QETL+  ERHGGEDA I IKYM+PTYESC+L
Sbjct: 182 IFKNVNTNSGDGIDYSQQKRENIGDLIQETLEAFERHGGEDAFINIKYMVPTYESCLL 239

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|340375228|ref|XP_003386138.1| PREDICTED: parkin coregulated gene protein homolog [Amphimedon queenslandica]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/58 (77%), Positives = 49/58 (84%)

Query: 1   MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 58
           +YK  N N+GD IDYSQ KRENIGDL+QETL+  ERHGGEDA I IKYMIPTYESCIL
Sbjct: 181 IYKMKNLNSGDGIDYSQQKRENIGDLIQETLEAFERHGGEDAFINIKYMIPTYESCIL 238

Source: Amphimedon queenslandica

Species: Amphimedon queenslandica

Genus: Amphimedon

Family: Niphatidae

Order: Haplosclerida

Class: Demospongiae

Phylum: Porifera

Superkingdom: Eukaryota

>gi|261289807|ref|XP_002611765.1| hypothetical protein BRAFLDRAFT_99083 [Branchiostoma floridae] gi|229297137|gb|EEN67775.1| hypothetical protein BRAFLDRAFT_99083 [Branchiostoma floridae]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/58 (72%), Positives = 51/58 (87%)

Query: 1   MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 58
           ++K++N N+GD IDYSQ KRENIGDL+QETL+  ERHGGEDA I IKYM+PTYESC+L
Sbjct: 163 IFKNMNLNSGDGIDYSQQKRENIGDLIQETLEAFERHGGEDAFINIKYMVPTYESCML 220

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|163915233|ref|NP_001106393.1| uncharacterized protein LOC100127543 [Xenopus (Silurana) tropicalis] gi|156230531|gb|AAI52038.1| LOC100127543 protein [Xenopus (Silurana) tropicalis]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/58 (72%), Positives = 51/58 (87%)

Query: 1   MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 58
           ++K++N N+GD IDYSQ KRENIGDL+QETL+  ERHGGEDA I IKYM+PTYESC+L
Sbjct: 182 IFKNVNINSGDGIDYSQQKRENIGDLIQETLEAFERHGGEDAFINIKYMVPTYESCLL 239

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326675661|ref|XP_003200404.1| PREDICTED: parkin coregulated gene protein homolog [Danio rerio]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 42/58 (72%), Positives = 53/58 (91%)

Query: 1   MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 58
           ++K++NKN+GD IDYSQ KRENIGDL+QETL++ ER+GGEDA I IKYM+PTYESC+L
Sbjct: 112 IFKNMNKNSGDGIDYSQQKRENIGDLIQETLEVFERYGGEDAFINIKYMVPTYESCLL 169

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|117940039|ref|NP_001071145.1| Park2 co-regulated [Rattus norvegicus] gi|117558840|gb|AAI27535.1| Park2 co-regulated [Rattus norvegicus]

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/58 (70%), Positives = 51/58 (87%)

Query: 1   MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 58
           ++K++N N+GD IDYSQ KRENIGDL+QETL+  ER+GGEDA I IKYM+PTYESC+L
Sbjct: 244 IFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGEDAFINIKYMVPTYESCLL 301

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291228567|ref|XP_002734249.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/58 (72%), Positives = 50/58 (86%)

Query: 1   MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 58
           ++K+ N N+GD IDYSQ KRENIGDL+QETL+  ERHGGEDA I IKYM+PTYESC+L
Sbjct: 178 IFKNHNLNSGDGIDYSQQKRENIGDLIQETLEAFERHGGEDAFINIKYMVPTYESCML 235

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	63
ZFIN|ZDB-GENE-041114-100	236	pacrg "PARK2 co-regulated" [Da	0.920	0.245	0.724	1.7e-20
MGI|MGI:1916560	241	Pacrg "PARK2 co-regulated" [Mu	0.920	0.240	0.706	2.5e-19
RGD|1561027	302	Pacrg "Park2 co-regulated" [Ra	0.920	0.192	0.706	2.5e-19
UNIPROTKB|A5PK71	257	PACRG "Uncharacterized protein	0.920	0.225	0.706	6.5e-19
UNIPROTKB|F1NWU1	269	F1NWU1 "Uncharacterized protei	0.809	0.189	0.764	6.7e-17
UNIPROTKB|Q96M98	296	PACRG "Parkin coregulated gene	0.809	0.172	0.725	1.1e-16

ZFIN|ZDB-GENE-041114-100 pacrg "PARK2 co-regulated" [Danio rerio (taxid:7955)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 42/58 (72%), Positives = 53/58 (91%)

Query:     1 MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 58
             ++K++NKN+GD IDYSQ KRENIGDL+QETL++ ER+GGEDA I IKYM+PTYESC+L
Sbjct:   178 IFKNMNKNSGDGIDYSQQKRENIGDLIQETLEVFERYGGEDAFINIKYMVPTYESCLL 235

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1916560 Pacrg "PARK2 co-regulated" [Mus musculus (taxid:10090)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 41/58 (70%), Positives = 51/58 (87%)

Query:     1 MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 58
             ++K++N N+GD IDYSQ KRENIGDL+QETL+  ER+GGEDA I IKYM+PTYESC+L
Sbjct:   183 IFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGEDAFINIKYMVPTYESCLL 240

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005929 "cilium" evidence=IDA

GO:0007286 "spermatid development" evidence=IGI

GO:0044297 "cell body" evidence=IDA

GO:0097225 "sperm midpiece" evidence=IDA

RGD|1561027 Pacrg "Park2 co-regulated" [Rattus norvegicus (taxid:10116)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 41/58 (70%), Positives = 51/58 (87%)

Query:     1 MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 58
             ++K++N N+GD IDYSQ KRENIGDL+QETL+  ER+GGEDA I IKYM+PTYESC+L
Sbjct:   244 IFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGEDAFINIKYMVPTYESCLL 301

GO:0005739 "mitochondrion" evidence=ISO

GO:0005929 "cilium" evidence=ISO

GO:0007286 "spermatid development" evidence=ISO

GO:0044297 "cell body" evidence=ISO

GO:0097225 "sperm midpiece" evidence=ISO

UNIPROTKB|A5PK71 PACRG "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 41/58 (70%), Positives = 50/58 (86%)

Query:     1 MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 58
             ++K+ N N+GD IDYSQ KRENIGDL+QETL+  ER+GGEDA I IKYM+PTYESC+L
Sbjct:   199 IFKNKNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGEDAFINIKYMVPTYESCLL 256

GO:0097225 "sperm midpiece" evidence=IEA

GO:0044297 "cell body" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1NWU1 F1NWU1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 39/51 (76%), Positives = 44/51 (86%)

Query:     8 NTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 58
             N+GD IDYSQ KRENIGDL+QETL+  ER+GGE A I IKYMIPTY+SCIL
Sbjct:   218 NSGDGIDYSQQKRENIGDLIQETLEAFERYGGETAYINIKYMIPTYQSCIL 268

GO:0005739 "mitochondrion" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0044297 "cell body" evidence=IEA

GO:0097225 "sperm midpiece" evidence=IEA

UNIPROTKB|Q96M98 PACRG "Parkin coregulated gene protein" [Homo sapiens (taxid:9606)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 37/51 (72%), Positives = 45/51 (88%)

Query:     8 NTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 58
             N+GD IDYSQ KRENIGDL+QETL+  ER+GGE+A I IKY++PTYESC+L
Sbjct:   245 NSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLL 295


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.138   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       63        63   0.00091  102 3  11 22  0.41    28
                                                     29  0.42    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  485 (52 KB)
  Total size of DFA:  88 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.12u 0.13s 8.25t   Elapsed:  00:00:00
  Total cpu time:  8.12u 0.13s 8.25t   Elapsed:  00:00:00
  Start:  Thu Aug 15 12:54:56 2013   End:  Thu Aug 15 12:54:56 2013

GO:0005739 "mitochondrion" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0044297 "cell body" evidence=IEA

GO:0097225 "sperm midpiece" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9DAK2	PACRG_MOUSE	No assigned EC number	0.7068	0.9206	0.2406	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	63
pfam10274	183	pfam10274, ParcG, Parkin co-regulated protein	3e-23

>gnl|CDD|220670 pfam10274, ParcG, Parkin co-regulated protein

 Score = 86.2 bits (214), Expect = 3e-23
 Identities = 36/55 (65%), Positives = 45/55 (81%), Gaps = 2/55 (3%)

Query: 1   MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYES 55
           ++K+ N N GD IDY   K++NIGDL+QETL++LER+GG DA I IKYMIPTYES
Sbjct: 131 LFKNKNVNLGDRIDY--RKKKNIGDLIQETLELLERNGGPDALINIKYMIPTYES 183

This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. Length = 183

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	63
KOG3961|consensus	262		99.96
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	99.96

>KOG3961|consensus

Probab=99.96  E-value=3.8e-31  Score=194.53  Aligned_cols=57  Identities=60%  Similarity=0.994  Sum_probs=54.2

Q ss_pred             CCccccCCCCCcccccccccCChhHHHHHHHHHHHHcCCccceeeeeecccCcceeeee
Q psy7097           1 MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILR   59 (63)
Q Consensus         1 ~fk~~n~n~gD~idy~qrk~~nlGdLI~eTL~~lEr~GG~dAfinIKymVPTYeScv~~   59 (63)
                      +||+.|.|+||+|||  .|++||||||+|||+.||++|||+|||||||||||||||.++
T Consensus       206 ~~k~~n~n~gd~idy--dk~~~igdlI~dTL~~LE~~GGpnAfINIKY~vPtYESC~~~  262 (262)
T KOG3961|consen  206 TFKNSNVNRGDGIDY--DKNRNIGDLINDTLKHLERSGGPNAFINIKYMVPTYESCCLN  262 (262)
T ss_pred             hhcccccccccccCc--cccccHHHHHHHHHHHHHHcCCccceeeEeeccCcchhhcCC
Confidence            599999999999999  578999999999999999999999999999999999999764

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=99.96  E-value=6.9e-31  Score=183.69  Aligned_cols=53  Identities=68%  Similarity=1.105  Sum_probs=51.5

Q ss_pred             CCccccCCCCCcccccccccCChhHHHHHHHHHHHHcCCccceeeeeecccCcce
Q psy7097           1 MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYES   55 (63)
Q Consensus         1 ~fk~~n~n~gD~idy~qrk~~nlGdLI~eTL~~lEr~GG~dAfinIKymVPTYeS   55 (63)
                      +||++|.|+||+|||  ++++++||+|+|||++|||+||+|||+|||||||||||
T Consensus       131 ~f~~k~~n~gd~i~y--~~~~~~~dlI~etL~~lE~~GG~dA~~nIKy~IPTYeS  183 (183)
T PF10274_consen  131 LFKNKNVNLGDGIDY--RKRKNLGDLIQETLELLERNGGPDAFINIKYMIPTYES  183 (183)
T ss_pred             HHHhcccCCCccccc--ccccchhHHHHHHHHHHHHhcChhHHHHHHHhCCCCCC
Confidence            589999999999999  78899999999999999999999999999999999998

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	63
d2phcb2	84	Uncharacterized protein PH0987 {Pyrococcus horikos	81.16
d2nysa1	117	Uncharacterized protein AGR_C_3712p {Agrobacterium	80.62

>d2phcb2 d.74.5.1 (B:2-85) Uncharacterized protein PH0987 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: DCoH-like
superfamily: PH0987 N-terminal domain-like
family: PH0987 N-terminal domain-like
domain: Uncharacterized protein PH0987
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=81.16  E-value=0.49  Score=26.01  Aligned_cols=45  Identities=22%  Similarity=0.448  Sum_probs=33.8

Q ss_pred             ccccccccCChhHHHHHHHHHHHHcCCccceeeeeecccCcceeeeeee
Q psy7097          13 IDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILRYT   61 (63)
Q Consensus        13 idy~qrk~~nlGdLI~eTL~~lEr~GG~dAfinIKymVPTYeScv~~~~   61 (63)
                      ++|+..-...+-..|...-+.|++.-    +.-|.-+||+|.|.+..|-
T Consensus        12 v~fg~~i~~~~~~~v~~l~~~l~~~~----~~gI~e~vPsy~SllV~yD   56 (84)
T d2phcb2          12 ISFGDEISEEINDRVHSLAKAIEKES----PEWLVELVPAYSSLLVIYD   56 (84)
T ss_dssp             EECCSCCCHHHHHHHHHHHHHHHHHC----CTTEEEEEEETTEEEEEEC
T ss_pred             EEECCcCCHHHHHHHHHHHHHHHhcC----CCCeeEecccceEEEEEEC
Confidence            45555444567778888888888874    4468889999999998773

>d2nysa1 b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: SspB-like
superfamily: SspB-like
family: AGR C 3712p-like
domain: Uncharacterized protein AGR C 3712p
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=80.62  E-value=0.29  Score=30.44  Aligned_cols=29  Identities=17%  Similarity=0.422  Sum_probs=26.8

Q ss_pred             CcccccccccCChhHHHHHHHHHHHHcCC
Q psy7097          11 DAIDYSQMKRENIGDLVQETLQILERHGG   39 (63)
Q Consensus        11 D~idy~qrk~~nlGdLI~eTL~~lEr~GG   39 (63)
                      |.|||+..-...+-.+|-+.|+..+++|+
T Consensus         2 d~i~Y~~lv~~alr~Vvr~~L~~v~~~G~   30 (117)
T d2nysa1           2 DHIRYDILAQDALRGVIRKVLGEVAATGR   30 (117)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            78999998888999999999999999993