Psyllid ID: psy7101

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MKLLSPLELVEQSEGEDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDEHFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR
Secondary Structure (PSIPRED)
cccccccHHHcccccccccccccccccHHHHHHHHHHHHHHHHccEEEEEEccHHHHHHHHHHcccccHHccccEEEEEEEccccccccccccccccccccccccccccHHHHccccHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccHHHcccccccccccccccccccccHHHHHHHHHHHHHEEEEEEEcccHHHHHHHHHHccccEEEccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mkllsplelveqsegedsaeeestegnayhREKLRQYQLNRLKYYYAVVVFDSaesankvytecdgmeyessatrvdlrfvpddtefdehfdpgkwplssssnispqadlmvhlpqiRDDHMKYISELAR
Flexible Loop (DISEMBL)
mkllsplelveqsegedsaeeestegnayhreKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDEHFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR
Low Complexity Region (SEG)
MKLLSPLELVeqsegedsaeeesteGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDEHFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR
Disordered region (IsUnstruct)
********************************KLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVP************************************************
Disordered Region (DISOPRED)
****SPL************************EKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDEHFD*********SNISPQADLMVHLPQIRDDHMKYISELA*
Disordered Region (DISEMBL)
MKLLSPLEL*****************NAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDEHFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR
Disordered Region (DISPRO)
*****P***V****************NAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDEHFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLLSPLELVEQSEGEDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDEHFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
Q76MT4	842	ESF1 homolog OS=Rattus no	yes	N/A	0.753	0.116	0.426	1e-18
Q9H501	851	ESF1 homolog OS=Homo sapi	yes	N/A	0.623	0.095	0.5	2e-18
Q3V1V3	845	ESF1 homolog OS=Mus muscu	yes	N/A	0.6	0.092	0.505	7e-18
O74828	682	Pre-rRNA-processing prote	yes	N/A	0.492	0.093	0.593	4e-16
Q299G2	1291	Cytoplasmic FMR1-interact	no	N/A	0.323	0.032	0.833	4e-15
Q9VF87	1291	Cytoplasmic FMR1-interact	no	N/A	0.323	0.032	0.833	4e-15
Q756J5	619	Pre-rRNA-processing prote	yes	N/A	0.476	0.100	0.5	2e-12
Q06344	628	Pre-rRNA-processing prote	yes	N/A	0.430	0.089	0.535	2e-12
Q96F07	1278	Cytoplasmic FMR1-interact	no	N/A	0.376	0.038	0.423	0.0001
Q5SQX6	1253	Cytoplasmic FMR1-interact	no	N/A	0.376	0.039	0.423	0.0001

>sp|Q76MT4|ESF1_RAT ESF1 homolog OS=Rattus norvegicus GN=Esf1 PE=1 SV=1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 71/115 (61%), Gaps = 17/115 (14%)

Query: 2   KLLSPLELVEQSEGEDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVY 61
           ++  P+EL+       S  E++ E +   REKLR YQ  RLKYYYAVV  DS E+A+K+Y
Sbjct: 390 QIQGPVELL-------SIPEDAPEKDWASREKLRDYQFKRLKYYYAVVECDSPETASKIY 442

Query: 62  TECDGMEYESSATRVDLRFVPDDTEFDEHFDPGKWPLSSSSNISPQADLMVHLPQ 116
            +CDG+E+ESS + +DLRF+PDD  FD+       P  ++S +    DL  + P+
Sbjct: 443 EDCDGLEFESSCSFIDLRFIPDDITFDDE------PKDAASEV----DLTAYKPK 487

May constitute a novel regulatory system for basal transcription. Negatively regulates ABT1.
Rattus norvegicus (taxid: 10116)

>sp|Q9H501|ESF1_HUMAN ESF1 homolog OS=Homo sapiens GN=ESF1 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 61/88 (69%), Gaps = 7/88 (7%)

Query: 2   KLLSPLELVEQSEGEDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVY 61
           ++  P+EL+       S  E++ E +   REKLR YQ  RLKYYYAVV  DS E+A+K+Y
Sbjct: 398 QVQGPVELL-------SIPEDAPEKDWTSREKLRDYQFKRLKYYYAVVDCDSPETASKIY 450

Query: 62  TECDGMEYESSATRVDLRFVPDDTEFDE 89
            +CDG+E+ESS + +DLRF+PDD  FD+
Sbjct: 451 EDCDGLEFESSCSFIDLRFIPDDITFDD 478

May constitute a novel regulatory system for basal transcription. Negatively regulates ABT1.

Homo sapiens (taxid: 9606)

>sp|Q3V1V3|ESF1_MOUSE ESF1 homolog OS=Mus musculus GN=Esf1 PE=1 SV=1

 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 58/85 (68%), Gaps = 7/85 (8%)

Query: 5   SPLELVEQSEGEDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTEC 64
            P+EL+       S  E++ E +   REKLR YQ  RLKYYYAV   DS E+A+K+Y +C
Sbjct: 395 GPVELL-------SIPEDAPEKDWASREKLRDYQFKRLKYYYAVAECDSPETASKIYEDC 447

Query: 65  DGMEYESSATRVDLRFVPDDTEFDE 89
           DG+E+ESS + +DLRF+PDD  FD+
Sbjct: 448 DGLEFESSCSFIDLRFIPDDITFDD 472

May constitute a novel regulatory system for basal transcription. Negatively regulates ABT1.

Mus musculus (taxid: 10090)

>sp|O74828|ESF1_SCHPO Pre-rRNA-processing protein esf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=esf1 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 45/64 (70%)

Query: 26  GNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDT 85
           GN +   KLRQYQL RL+YYYAVV  DS  +A  +Y  CDG EYE+SA   DLRF+PDD 
Sbjct: 278 GNEFDMVKLRQYQLERLRYYYAVVECDSVRTAKVIYETCDGAEYETSANIYDLRFIPDDV 337

Query: 86  EFDE 89
            FD+
Sbjct: 338 TFDD 341

Involved in the 18S rRNA synthesis. Required for the early cleavages at sites A0, A1 and A2.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q299G2|CYFIP_DROPS Cytoplasmic FMR1-interacting protein OS=Drosophila pseudoobscura pseudoobscura GN=Sra-1 PE=3 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/42 (83%), Positives = 39/42 (92%)

Query: 89  EHFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR 130
           +HFD  KWPLSSS+ ISPQADLMVHLPQIR+DH+KYISELAR
Sbjct: 323 KHFDSSKWPLSSSNAISPQADLMVHLPQIREDHVKYISELAR 364

Plays a role in guidance and morphology of central and peripheral axons and in synaptic morphology. Also required for formation of cell membrane protrusions and for bristle development.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q9VF87|CYFIP_DROME Cytoplasmic FMR1-interacting protein OS=Drosophila melanogaster GN=Sra-1 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/42 (83%), Positives = 39/42 (92%)

Query: 89  EHFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR 130
           +HFD  KWPLSSS+ ISPQADLMVHLPQIR+DH+KYISELAR
Sbjct: 323 KHFDSSKWPLSSSNAISPQADLMVHLPQIREDHVKYISELAR 364

Plays a role in guidance and morphology of central and peripheral axons and in synaptic morphology. Also required for formation of cell membrane protrusions and for bristle development.

Drosophila melanogaster (taxid: 7227)

>sp|Q756J5|ESF1_ASHGO Pre-rRNA-processing protein ESF1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ESF1 PE=3 SV=2

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 42/62 (67%)

Query: 29  YHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFD 88
           Y  + LR+YQL RL+YYYAVV  ++  +A  +Y  CDG EYES+A   DLR+VP+   FD
Sbjct: 241 YDSKALRRYQLERLRYYYAVVYCNNVATAEAIYQNCDGTEYESTANMFDLRYVPEGVTFD 300

Query: 89  EH 90
           + 
Sbjct: 301 DE 302

Involved in the 18S rRNA synthesis. Required for the early cleavages at sites A0, A1 and A2.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q06344|ESF1_YEAST Pre-rRNA-processing protein ESF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ESF1 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 39/56 (69%)

Query: 34  LRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDE 89
           LRQYQL+RL+YYYA+V      ++  +Y  CDG EYES+A   DLR+VPD   FD+
Sbjct: 249 LRQYQLDRLRYYYAIVYCSDTTTSKAIYDNCDGTEYESTANMFDLRYVPDGMTFDD 304

Involved in the 18S rRNA synthesis. Required for the early cleavages at sites A0, A1 and A2.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q96F07|CYFP2_HUMAN Cytoplasmic FMR1-interacting protein 2 OS=Homo sapiens GN=CYFIP2 PE=1 SV=2

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 3/52 (5%)

Query: 79  RFVPDDTEFDEHFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR 130
           R++     ++E  +  KW  + SS ISPQ ++   + QIRDDH+++ISELAR
Sbjct: 317 RYIKTSAHYEE--NKSKWTCTQSS-ISPQYNICEQMVQIRDDHIRFISELAR 365

Involved in T-cell adhesion and p53/TP53-dependent induction of apoptosis. Does not bind RNA.

Homo sapiens (taxid: 9606)

>sp|Q5SQX6|CYFP2_MOUSE Cytoplasmic FMR1-interacting protein 2 OS=Mus musculus GN=Cyfip2 PE=1 SV=2

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 3/52 (5%)

Query: 79  RFVPDDTEFDEHFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR 130
           R++     ++E  +  KW  + SS ISPQ ++   + QIRDDH+++ISELAR
Sbjct: 317 RYIKTSAHYEE--NKSKWTCTQSS-ISPQYNICEQMVQIRDDHIRFISELAR 365

Involved in T-cell adhesion and p53-dependent induction of apoptosis (By similarity). Does not bind RNA.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
340719677	757	PREDICTED: ESF1 homolog [Bombus terrestr	0.653	0.112	0.655	7e-27
350400925	757	PREDICTED: ESF1 homolog isoform 1 [Bombu	0.653	0.112	0.655	8e-27
328785898	731	PREDICTED: ESF1 homolog [Apis mellifera]	0.669	0.119	0.659	9e-27
350400928	767	PREDICTED: ESF1 homolog isoform 2 [Bombu	0.607	0.102	0.696	5e-26
194912391	776	GG12845 [Drosophila erecta] gi|190648171	0.653	0.109	0.645	2e-25
307199373	777	ESF1-like protein [Harpegnathos saltator	0.669	0.111	0.632	2e-25
195469713	776	GE16680 [Drosophila yakuba] gi|194187305	0.653	0.109	0.645	3e-25
20128861	771	CG11417 [Drosophila melanogaster] gi|292	0.653	0.110	0.645	4e-25
21483398	785	LD23562p [Drosophila melanogaster]	0.653	0.108	0.645	5e-25
91081029	634	PREDICTED: similar to CG11417 CG11417-PA	0.630	0.129	0.705	5e-25

>gi|340719677|ref|XP_003398274.1| PREDICTED: ESF1 homolog [Bombus terrestris]

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 59/90 (65%), Positives = 75/90 (83%), Gaps = 5/90 (5%)

Query: 3   LLSPLELVE---QSEGEDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANK 59
           +  P EL E   + E E+ +++E  EG+AYH EKLRQYQLNRLKYYYAVV FDSAE+ANK
Sbjct: 309 IKGPKELTEINKEKENENGSDDE--EGSAYHMEKLRQYQLNRLKYYYAVVDFDSAETANK 366

Query: 60  VYTECDGMEYESSATRVDLRFVPDDTEFDE 89
           +YTECDG+EYES+AT++DLRF+PDD +FD+
Sbjct: 367 IYTECDGIEYESTATKLDLRFIPDDMKFDQ 396

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400925|ref|XP_003486005.1| PREDICTED: ESF1 homolog isoform 1 [Bombus impatiens]

 Score =  125 bits (313), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 59/90 (65%), Positives = 75/90 (83%), Gaps = 5/90 (5%)

Query: 3   LLSPLELVE---QSEGEDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANK 59
           +  P EL E   + E E+ +++E  EG+AYH EKLRQYQLNRLKYYYAVV FDSAE+ANK
Sbjct: 309 IKGPKELTEINKEKENENGSDDE--EGSAYHMEKLRQYQLNRLKYYYAVVDFDSAETANK 366

Query: 60  VYTECDGMEYESSATRVDLRFVPDDTEFDE 89
           +YTECDG+EYES+AT++DLRF+PDD +FD+
Sbjct: 367 IYTECDGIEYESTATKLDLRFIPDDMKFDQ 396

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785898|ref|XP_003250673.1| PREDICTED: ESF1 homolog [Apis mellifera]

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 71/88 (80%), Gaps = 1/88 (1%)

Query: 3   LLSPLELVEQ-SEGEDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVY 61
           L  P EL E   E ++  E +  EG+AYH EKLRQYQLNRLKYYYAV+ FDSAE+ANK+Y
Sbjct: 300 LQGPKELTEMDKEKKNEDENDDEEGSAYHMEKLRQYQLNRLKYYYAVIDFDSAETANKIY 359

Query: 62  TECDGMEYESSATRVDLRFVPDDTEFDE 89
           TECDG EYES+AT++DLRF+P+D EFD+
Sbjct: 360 TECDGTEYESTATKLDLRFIPNDMEFDQ 387

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400928|ref|XP_003486006.1| PREDICTED: ESF1 homolog isoform 2 [Bombus impatiens]

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 55/79 (69%), Positives = 67/79 (84%)

Query: 11  EQSEGEDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYE 70
           E   G D+   +  EG+AYH EKLRQYQLNRLKYYYAVV FDSAE+ANK+YTECDG+EYE
Sbjct: 323 ENENGSDNIIFQDEEGSAYHMEKLRQYQLNRLKYYYAVVDFDSAETANKIYTECDGIEYE 382

Query: 71  SSATRVDLRFVPDDTEFDE 89
           S+AT++DLRF+PDD +FD+
Sbjct: 383 STATKLDLRFIPDDMKFDQ 401

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194912391|ref|XP_001982495.1| GG12845 [Drosophila erecta] gi|190648171|gb|EDV45464.1| GG12845 [Drosophila erecta]

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/93 (64%), Positives = 72/93 (77%), Gaps = 8/93 (8%)

Query: 5   SPLELVEQSEGEDSAEEE--------STEGNAYHREKLRQYQLNRLKYYYAVVVFDSAES 56
            P ELVE++E ED ++EE        + EG  YH EKLRQYQLNRL+YYYAVV  DS ++
Sbjct: 283 GPKELVERNEPEDDSDEELVRQQDSDAEEGEDYHMEKLRQYQLNRLRYYYAVVECDSIDT 342

Query: 57  ANKVYTECDGMEYESSATRVDLRFVPDDTEFDE 89
           A+KVY ECDG+EYESSATRVDLRF+PDDT F+E
Sbjct: 343 ADKVYKECDGIEYESSATRVDLRFIPDDTSFEE 375

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199373|gb|EFN79998.1| ESF1-like protein [Harpegnathos saltator]

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 67/87 (77%)

Query: 3   LLSPLELVEQSEGEDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYT 62
           +  P EL + +   D   E++ EG  YH EKLRQYQLNRLKYYYAV  FDSAE+ANKVYT
Sbjct: 322 ISGPKELKDDNINSDDENEDNEEGAQYHMEKLRQYQLNRLKYYYAVAEFDSAETANKVYT 381

Query: 63  ECDGMEYESSATRVDLRFVPDDTEFDE 89
           ECDG+EYES++ R+DLRF+PDD  FD+
Sbjct: 382 ECDGIEYESTSNRLDLRFIPDDMTFDQ 408

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195469713|ref|XP_002099781.1| GE16680 [Drosophila yakuba] gi|194187305|gb|EDX00889.1| GE16680 [Drosophila yakuba]

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/93 (64%), Positives = 70/93 (75%), Gaps = 8/93 (8%)

Query: 5   SPLELVEQSEGEDSAEEE--------STEGNAYHREKLRQYQLNRLKYYYAVVVFDSAES 56
            P ELVE  E ED ++EE        + EG  YH EKLRQYQLNRL+YYYAVV  DS ++
Sbjct: 283 GPKELVEHKEQEDDSDEELVRQQDSDAEEGEDYHMEKLRQYQLNRLRYYYAVVECDSIDT 342

Query: 57  ANKVYTECDGMEYESSATRVDLRFVPDDTEFDE 89
           A+KVY ECDG+EYESSATRVDLRF+PDDT F+E
Sbjct: 343 ADKVYKECDGIEYESSATRVDLRFIPDDTSFEE 375

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|20128861|ref|NP_569906.1| CG11417 [Drosophila melanogaster] gi|2924552|emb|CAA17684.1| EG:8D8.4 [Drosophila melanogaster] gi|7290146|gb|AAF45610.1| CG11417 [Drosophila melanogaster]

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/93 (64%), Positives = 71/93 (76%), Gaps = 8/93 (8%)

Query: 5   SPLELVEQSEGEDSAEEE--------STEGNAYHREKLRQYQLNRLKYYYAVVVFDSAES 56
            P ELVE+ E ED ++EE        + EG  YH EKLRQYQLNRL+YYYAVV  DS ++
Sbjct: 278 GPKELVERVEPEDDSDEELVRQQDSDAEEGEDYHMEKLRQYQLNRLRYYYAVVECDSIDT 337

Query: 57  ANKVYTECDGMEYESSATRVDLRFVPDDTEFDE 89
           A+KVY ECDG+EYESSATRVDLRF+PDDT F+E
Sbjct: 338 ADKVYKECDGIEYESSATRVDLRFIPDDTSFEE 370

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21483398|gb|AAM52674.1| LD23562p [Drosophila melanogaster]

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 60/93 (64%), Positives = 71/93 (76%), Gaps = 8/93 (8%)

Query: 5   SPLELVEQSEGEDSAEEE--------STEGNAYHREKLRQYQLNRLKYYYAVVVFDSAES 56
            P ELVE+ E ED ++EE        + EG  YH EKLRQYQLNRL+YYYAVV  DS ++
Sbjct: 292 GPKELVERVEPEDDSDEELVRQQDSDAEEGEDYHMEKLRQYQLNRLRYYYAVVECDSIDT 351

Query: 57  ANKVYTECDGMEYESSATRVDLRFVPDDTEFDE 89
           A+KVY ECDG+EYESSATRVDLRF+PDDT F+E
Sbjct: 352 ADKVYKECDGIEYESSATRVDLRFIPDDTSFEE 384

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91081029|ref|XP_975330.1| PREDICTED: similar to CG11417 CG11417-PA [Tribolium castaneum] gi|270005326|gb|EFA01774.1| hypothetical protein TcasGA2_TC007375 [Tribolium castaneum]

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 60/85 (70%), Positives = 69/85 (81%), Gaps = 3/85 (3%)

Query: 5   SPLELVEQSEGEDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTEC 64
            P+ELVE  E     EE++ EG+ YH EKLRQYQLNRLKYYYAVV FD A +ANKVYTEC
Sbjct: 217 GPIELVEHKE---IEEEDTEEGSKYHMEKLRQYQLNRLKYYYAVVTFDGANTANKVYTEC 273

Query: 65  DGMEYESSATRVDLRFVPDDTEFDE 89
           DGMEYESSAT++DLRF+PDD  FD+
Sbjct: 274 DGMEYESSATKLDLRFIPDDMTFDD 298

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
FB|FBgn0024364	785	CG11417 [Drosophila melanogast	0.730	0.121	0.572	1.1e-22
ZFIN|ZDB-GENE-030131-4917	757	esf1 "ESF1, nucleolar pre-rRNA	0.461	0.079	0.633	3e-17
RGD|1306067	842	Esf1 "ESF1, nucleolar pre-rRNA	0.453	0.070	0.644	2e-16
UNIPROTKB|Q9H501	851	ESF1 "ESF1 homolog" [Homo sapi	0.453	0.069	0.644	2.6e-16
UNIPROTKB|E1BKI4	856	ESF1 "Uncharacterized protein"	0.453	0.068	0.661	4.3e-16
MGI|MGI:1913830	845	Esf1 "ESF1, nucleolar pre-rRNA	0.453	0.069	0.627	5.4e-16
UNIPROTKB|F1SBJ2	858	ESF1 "Uncharacterized protein"	0.453	0.068	0.644	5.5e-16
UNIPROTKB|E2REW3	849	ESF1 "Uncharacterized protein"	0.453	0.069	0.627	7e-16
POMBASE|SPBC1734.01c	682	esf1 "pre-rRNA processing prot	0.492	0.093	0.593	2.2e-15
CGD|CAL0000677	672	orf19.2319 [Candida albicans (	0.469	0.090	0.606	4.4e-15

FB|FBgn0024364 CG11417 [Drosophila melanogaster (taxid:7227)]

 Score = 273 (101.2 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 55/96 (57%), Positives = 68/96 (70%)

Query:    26 GNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDT 85
             G  YH EKLRQYQLNRL+YYYAVV  DS ++A+KVY ECDG+EYESSATRVDLRF+PDDT
Sbjct:   321 GEDYHMEKLRQYQLNRLRYYYAVVECDSIDTADKVYKECDGIEYESSATRVDLRFIPDDT 380

Query:    86 EFDEHFDPGK-WPLSSSSNISPQADLMVHLPQIRDD 120
              F+E     + + L  +S+  P+      L Q + D
Sbjct:   381 SFEEDTPSDECFELPDASSYKPRQFTTTALQQAKVD 416

GO:0005634 "nucleus" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-030131-4917 esf1 "ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 222 (83.2 bits), Expect = 3.0e-17, P = 3.0e-17
 Identities = 38/60 (63%), Positives = 50/60 (83%)

Query:    30 HREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDE 89
             +REK+R YQ  RL+YYYAVV  DSAE+A+K+Y ECDG+EYE+S + +DLRF+PDD  FD+
Sbjct:   308 YREKVRDYQFKRLRYYYAVVECDSAETASKIYEECDGIEYETSCSMIDLRFIPDDVTFDD 367

GO:0005634 "nucleus" evidence=IEA

RGD|1306067 Esf1 "ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 215 (80.7 bits), Expect = 2.0e-16, P = 2.0e-16
 Identities = 38/59 (64%), Positives = 48/59 (81%)

Query:    31 REKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDE 89
             REKLR YQ  RLKYYYAVV  DS E+A+K+Y +CDG+E+ESS + +DLRF+PDD  FD+
Sbjct:   412 REKLRDYQFKRLKYYYAVVECDSPETASKIYEDCDGLEFESSCSFIDLRFIPDDITFDD 470

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q9H501 ESF1 "ESF1 homolog" [Homo sapiens (taxid:9606)]

 Score = 214 (80.4 bits), Expect = 2.6e-16, P = 2.6e-16
 Identities = 38/59 (64%), Positives = 48/59 (81%)

Query:    31 REKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDE 89
             REKLR YQ  RLKYYYAVV  DS E+A+K+Y +CDG+E+ESS + +DLRF+PDD  FD+
Sbjct:   420 REKLRDYQFKRLKYYYAVVDCDSPETASKIYEDCDGLEFESSCSFIDLRFIPDDITFDD 478

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|E1BKI4 ESF1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 212 (79.7 bits), Expect = 4.3e-16, P = 4.3e-16
 Identities = 39/59 (66%), Positives = 47/59 (79%)

Query:    31 REKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDE 89
             REKLR YQ  RLKYYYAVV  DS E+A K+Y +CDG+E+ESS + VDLRF+PDD  FD+
Sbjct:   424 REKLRDYQFKRLKYYYAVVDCDSPETAAKIYEDCDGLEFESSCSFVDLRFIPDDITFDD 482

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1913830 Esf1 "ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 211 (79.3 bits), Expect = 5.4e-16, P = 5.4e-16
 Identities = 37/59 (62%), Positives = 47/59 (79%)

Query:    31 REKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDE 89
             REKLR YQ  RLKYYYAV   DS E+A+K+Y +CDG+E+ESS + +DLRF+PDD  FD+
Sbjct:   414 REKLRDYQFKRLKYYYAVAECDSPETASKIYEDCDGLEFESSCSFIDLRFIPDDITFDD 472

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1SBJ2 ESF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 211 (79.3 bits), Expect = 5.5e-16, P = 5.5e-16
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query:    31 REKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDE 89
             REKLR YQ  RLKYYYAVV  DS E+A K+Y +CDG+E+ESS + +DLRF+PDD  FD+
Sbjct:   425 REKLRDYQFKRLKYYYAVVDCDSPETAAKIYEDCDGLEFESSCSFIDLRFIPDDITFDD 483

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2REW3 ESF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 210 (79.0 bits), Expect = 7.0e-16, P = 7.0e-16
 Identities = 37/59 (62%), Positives = 47/59 (79%)

Query:    31 REKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDE 89
             REKLR YQ  RL+YYYAVV  DS E+A K+Y +CDG+E+ESS + +DLRF+PDD  FD+
Sbjct:   416 REKLRDYQFKRLRYYYAVVDCDSPETAGKIYEDCDGLEFESSCSFIDLRFIPDDITFDD 474

GO:0005634 "nucleus" evidence=IEA

POMBASE|SPBC1734.01c esf1 "pre-rRNA processing protein Esf1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 204 (76.9 bits), Expect = 2.2e-15, P = 2.2e-15
 Identities = 38/64 (59%), Positives = 45/64 (70%)

Query:    26 GNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDT 85
             GN +   KLRQYQL RL+YYYAVV  DS  +A  +Y  CDG EYE+SA   DLRF+PDD 
Sbjct:   278 GNEFDMVKLRQYQLERLRYYYAVVECDSVRTAKVIYETCDGAEYETSANIYDLRFIPDDV 337

Query:    86 EFDE 89
              FD+
Sbjct:   338 TFDD 341

GO:0003723 "RNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO;IDA

GO:0006364 "rRNA processing" evidence=ISO

CGD|CAL0000677 orf19.2319 [Candida albicans (taxid:5476)]

 Score = 201 (75.8 bits), Expect = 4.4e-15, P = 4.4e-15
 Identities = 37/61 (60%), Positives = 45/61 (73%)

Query:    29 YHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFD 88
             Y  + LR+YQL RL+YYYAVV  DS E+A  +Y  CDG EYES+A   DLR+VPDD EFD
Sbjct:   284 YDSKALRRYQLQRLRYYYAVVKCDSVETARSIYQNCDGTEYESTANIFDLRYVPDDMEFD 343

Query:    89 E 89
             +
Sbjct:   344 D 344

GO:0005730 "nucleolus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O74828	ESF1_SCHPO	No assigned EC number	0.5937	0.4923	0.0938	yes	N/A
Q06344	ESF1_YEAST	No assigned EC number	0.5357	0.4307	0.0891	yes	N/A
Q3V1V3	ESF1_MOUSE	No assigned EC number	0.5058	0.6	0.0923	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	130
COG5638	622	COG5638, COG5638, Uncharacterized conserved protei	2e-17

>gnl|CDD|227925 COG5638, COG5638, Uncharacterized conserved protein [Function unknown]

 Score = 76.7 bits (188), Expect = 2e-17
 Identities = 40/80 (50%), Positives = 54/80 (67%), Gaps = 1/80 (1%)

Query: 10  VEQSEGEDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEY 69
            ++  GED+  E    GN +   KLRQYQL RL+YYYAVV  +  E++  +Y+ CDG+EY
Sbjct: 225 SDRDAGEDALIEGDR-GNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEY 283

Query: 70  ESSATRVDLRFVPDDTEFDE 89
           E+SA  +DLRFVPD   FD+
Sbjct: 284 ENSANVLDLRFVPDSLTFDD 303

Length = 622

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
KOG2318|consensus	650		100.0
COG5638	622	Uncharacterized conserved protein [Function unknow	100.0
KOG3534|consensus	1253		99.36
PLN03099	1232	PIR Protein PIR; Provisional	95.87
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	92.23
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	90.35
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	89.31
smart00360	71	RRM RNA recognition motif.	86.59
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	85.46
smart00362	72	RRM_2 RNA recognition motif.	85.1
smart00361	70	RRM_1 RNA recognition motif.	84.21
PF07576	110	BRAP2: BRCA1-associated protein 2; InterPro: IPR01	83.08

>KOG2318|consensus

Probab=100.00  E-value=9.2e-40  Score=291.34  Aligned_cols=117  Identities=44%  Similarity=0.671  Sum_probs=108.3

Q ss_pred             CccCc-hhhhccCCCCCchhhhccccchhcHHHHHHHHHhhhceeeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101           2 KLLSP-LELVEQSEGEDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus         2 ~~~gp-~el~~~~~~~~~~~~~~~~~~~~~~e~lR~Yq~~rlrYyyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      +|||| .+|++..+...+++.+.+++++|++++||+||++|||||||||||||++||++||++|||+||++|+|+|||||
T Consensus       225 eV~GP~~el~~~~e~~~~s~sD~ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF  304 (650)
T KOG2318|consen  225 EVHGPPKELFKPVEEYKESESDDEEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF  304 (650)
T ss_pred             cccCChhhhccccccCcccccchhhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence            69997 99999888776666667788889999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcCCCCCC-CcccCCCCCCCCchhHHhhhchhhhhh
Q psy7101          81 VPDDTEFDEHFDP-GKWPLSSSSNISPQADLMVHLPQIRDD  120 (130)
Q Consensus        81 VPDd~~Fd~~~~~-~~t~~P~~s~YkP~~~i~~~L~~iRe~  120 (130)
                      |||||+|+++ |+ +|+++|.. +|+|..|.+.|||+..+.
T Consensus       305 IPDdm~Fddd-~rd~cseap~~-~Ykpk~Fst~Alq~s~vk  343 (650)
T KOG2318|consen  305 IPDDMTFDDD-PRDECSEAPGN-GYKPKDFSTRALQHSKVK  343 (650)
T ss_pred             cCCCCccccc-cHhHhhhcccc-ccCchhhhHHHHHhcccc
Confidence            9999999987 77 99999984 699999999999998764

>COG5638 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=7.3e-35  Score=254.91  Aligned_cols=95  Identities=41%  Similarity=0.701  Sum_probs=89.3

Q ss_pred             hccccchhcHHHHHHHHHhhhceeeEEEEeCCHHHHHHHHHhcCCcccccccccccccccCCCCCcCCCCCC-CcccCCC
Q psy7101          22 ESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDEHFDP-GKWPLSS  100 (130)
Q Consensus        22 ~~~~~~~~~~e~lR~Yq~~rlrYyyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVPDd~~Fd~~~~~-~~t~~P~  100 (130)
                      +.+-|.+||+.+||+|||+|||||||||+|+++.|++.||..|||+||++|+|++|||||||+|+|+++ .| +|+.+|.
T Consensus       236 Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD~~tfddd-~re~ct~~p~  314 (622)
T COG5638         236 EGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPDSLTFDDD-SREVCTKAPE  314 (622)
T ss_pred             hcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecCCCcccccc-hHhhhhcccc
Confidence            456678999999999999999999999999999999999999999999999999999999999999986 66 9999997


Q ss_pred             CCCCCchhHHhhhchhhhh
Q psy7101         101 SSNISPQADLMVHLPQIRD  119 (130)
Q Consensus       101 ~s~YkP~~~i~~~L~~iRe  119 (130)
                        +|.|+.|.+-+||+-.+
T Consensus       315 --~y~p~~f~tdalqhs~v  331 (622)
T COG5638         315 --KYEPRDFVTDALQHSKV  331 (622)
T ss_pred             --ccCcccchhhhhhhccc
Confidence              89999999999998654

>KOG3534|consensus

Probab=99.36  E-value=3.9e-13  Score=124.65  Aligned_cols=74  Identities=36%  Similarity=0.640  Sum_probs=69.9

Q ss_pred             CHHHHHHHHHhcCCcccccccccccccccCCCCCcCCCCCCCcccCCCCCCCCchhHHhhhchhhhhhhHHHHhhhcC
Q psy7101          53 SAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDEHFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR  130 (130)
Q Consensus        53 s~~tA~~iY~e~dG~E~e~s~~~lDLRFVPDd~~Fd~~~~~~~t~~P~~s~YkP~~~i~~~L~~iRe~h~~~iselAr  130 (130)
                      |....++||+++..+++.|++++-.+|||..+.+|++.    .|++.++.+.+|++||+++|+|||+||++|||||||
T Consensus       291 ~lsriDk~FK~LeVVPLfGDMQI~~~~yik~S~Hye~S----kW~~s~s~s~spq~ni~e~~~qIR~DH~~yiselAr  364 (1253)
T KOG3534|consen  291 SLSRIDKIFKTLEVVPLFGDMQIEPFRYIKRSAHYEES----KWPLSSSESISPQYNICEQMQQIREDHERYISELAR  364 (1253)
T ss_pred             CHHHHHHHHhheeeeeccCccchhHHHHhhhhcccCcc----cCCCcCcCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999863    799988778999999999999999999999999997

>PLN03099 PIR Protein PIR; Provisional

Probab=95.87  E-value=0.0041  Score=61.04  Aligned_cols=27  Identities=19%  Similarity=0.327  Sum_probs=26.0

Q ss_pred             CCchhHHhhhchhhhhhhHHHHhhhcC
Q psy7101         104 ISPQADLMVHLPQIRDDHMKYISELAR  130 (130)
Q Consensus       104 YkP~~~i~~~L~~iRe~h~~~iselAr  130 (130)
                      |+|+++|+++|.+||++|++|+++|||
T Consensus       294 F~~~y~I~~~m~~iR~dh~~f~~~~A~  320 (1232)
T PLN03099        294 FQREYLIVNHMGAIRAEHDDFCIRFAS  320 (1232)
T ss_pred             hcchHHHHHhHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999996

>PF00076 RRM_1: RNA recognition motif

Probab=92.23  E-value=0.24  Score=30.41  Aligned_cols=30  Identities=33%  Similarity=0.439  Sum_probs=26.5

Q ss_pred             ceeeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101          43 KYYYAVVVFDSAESANKVYTECDGMEYESS   72 (130)
Q Consensus        43 rYyyAVvecds~~tA~~iY~e~dG~E~e~s   72 (130)
                      .-=||.|+|.+.+.|+++.++++|..+.+.
T Consensus        38 ~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~   67 (70)
T PF00076_consen   38 SKGYAFVEFESEEDAEKALEELNGKKINGR   67 (70)
T ss_dssp             EEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred             ccceEEEEEcCHHHHHHHHHHcCCCEECcc
Confidence            345899999999999999999999988764

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>PF13893 RRM_5: RNA recognition motif

Probab=90.35  E-value=0.49  Score=29.03  Aligned_cols=28  Identities=29%  Similarity=0.465  Sum_probs=25.7

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESS   72 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s   72 (130)
                      -+|.|++.|++.|.+..+.++|..+.+.
T Consensus        22 ~~a~V~f~~~~~A~~a~~~l~~~~~~g~   49 (56)
T PF13893_consen   22 GFAFVEFASVEDAQKAIEQLNGRQFNGR   49 (56)
T ss_dssp             TEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred             CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence            6799999999999999999999998664

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>PF14259 RRM_6: RNA recognition motif (a

Probab=89.31  E-value=0.62  Score=29.23  Aligned_cols=31  Identities=26%  Similarity=0.328  Sum_probs=27.0

Q ss_pred             hceeeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101          42 LKYYYAVVVFDSAESANKVYTECDGMEYESS   72 (130)
Q Consensus        42 lrYyyAVvecds~~tA~~iY~e~dG~E~e~s   72 (130)
                      ...=+|.|+|.|.+.|..+.+.++|..+.+.
T Consensus        37 ~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~   67 (70)
T PF14259_consen   37 QSRGFAFVEFSSEEDAKRALELLNGKEIDGR   67 (70)
T ss_dssp             SEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred             ccCCEEEEEeCCHHHHHHHHHHCCCcEECCE
Confidence            3456899999999999999999999988764

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>smart00360 RRM RNA recognition motif

Probab=86.59  E-value=1.3  Score=25.91  Aligned_cols=26  Identities=35%  Similarity=0.567  Sum_probs=24.2

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYES   71 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~   71 (130)
                      ||.|+|.+.+.|....+.++|..+.+
T Consensus        40 ~a~v~f~~~~~a~~a~~~~~~~~~~~   65 (71)
T smart00360       40 FAFVEFESEEDAEKALEALNGKELDG   65 (71)
T ss_pred             eEEEEeCCHHHHHHHHHHcCCCeeCC
Confidence            89999999999999999999988865

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=85.46  E-value=1.1  Score=33.62  Aligned_cols=34  Identities=26%  Similarity=0.395  Sum_probs=29.0

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDL   78 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDL   78 (130)
                      =||.|+|.+.+.|.+..++++|.++.+....+++
T Consensus        77 GfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~  110 (144)
T PLN03134         77 GFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP  110 (144)
T ss_pred             eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence            3899999999999999999999999886544443

>smart00362 RRM_2 RNA recognition motif

Probab=85.10  E-value=1.6  Score=25.64  Aligned_cols=27  Identities=30%  Similarity=0.426  Sum_probs=24.3

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYES   71 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~   71 (130)
                      =||.|+|.+.+.|....+.++|..+.+
T Consensus        40 ~~~~v~f~~~~~a~~a~~~~~~~~~~~   66 (72)
T smart00362       40 GFAFVEFESEEDAEKAIEALNGTKLGG   66 (72)
T ss_pred             ceEEEEeCCHHHHHHHHHHhCCcEECC
Confidence            479999999999999999999988754

>smart00361 RRM_1 RNA recognition motif

Probab=84.21  E-value=1.8  Score=28.06  Aligned_cols=26  Identities=15%  Similarity=0.429  Sum_probs=24.5

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYES   71 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~   71 (130)
                      ||.|+|.+.+.|.+..++++|..+.+
T Consensus        39 ~~fV~f~~~~dA~~A~~~l~g~~~~g   64 (70)
T smart00361       39 NVYITFERSEDAARAIVDLNGRYFDG   64 (70)
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEECC
Confidence            69999999999999999999998876

>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []

Probab=83.08  E-value=1.8  Score=31.76  Aligned_cols=31  Identities=29%  Similarity=0.556  Sum_probs=26.8

Q ss_pred             hhceeeEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101          41 RLKYYYAVVVFDSAESANKVYTECDGMEYES   71 (130)
Q Consensus        41 rlrYyyAVvecds~~tA~~iY~e~dG~E~e~   71 (130)
                      +---|=+++.|.|.+.|+..|++.+|..|-+
T Consensus        51 ~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns   81 (110)
T PF07576_consen   51 TPNRYMVLIKFRDQESADEFYEEFNGKPFNS   81 (110)
T ss_pred             CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence            3346889999999999999999999998843

These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	130
3p8c_A	1253	Structure And Control Of The Actin Regulatory Wave		4e-05

>pdb|3P8C|A Chain A, Structure And Control Of The Actin Regulatory Wave Complex Length = 1253

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 79  RFVPDDTEFDEHFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR 130
           R++     ++E  +  +W  +SS + SPQ ++   + QIR+DHM++ISELAR
Sbjct: 317 RYIKTSAHYEE--NKSRWTCTSSGS-SPQYNICEQMIQIREDHMRFISELAR 365

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	130
3p8c_A	1253	Cytoplasmic FMR1-interacting protein 1; actin poly	3e-06

>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens} Length = 1253

 Score = 44.0 bits (103), Expect = 3e-06
 Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 90  HFDPGKW-PLSSSSNISPQADLMVHLPQIRDDHMKYISELAR 130
           H++  K     +SS  SPQ ++   + QIR+DHM++ISELAR
Sbjct: 324 HYEENKSRWTCTSSGSSPQYNICEQMIQIREDHMRFISELAR 365

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
3p8c_A	1253	Cytoplasmic FMR1-interacting protein 1; actin poly	98.4
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	92.28
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	92.16
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	91.65
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	91.65
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	91.55
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	91.45
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	90.26
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	90.19
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	90.17
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	90.05
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	90.02
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	89.94
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	89.8
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	89.71
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	89.69
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	89.68
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	89.66
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	89.5
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	89.43
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	89.39
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	89.38
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	89.35
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	89.23
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	89.11
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	88.96
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	88.95
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	88.95
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	88.92
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	88.86
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	88.83
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	88.7
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	88.62
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	88.61
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	88.6
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	88.6
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	88.58
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	88.57
2div_A	99	TRNA selenocysteine associated protein; structural	88.52
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	88.52
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	88.51
1x4e_A	85	RNA binding motif, single-stranded interacting pro	88.44
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	88.39
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	88.36
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	88.31
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	88.29
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	88.29
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	88.27
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	88.24
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	88.21
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	88.21
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	88.19
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	88.16
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	87.89
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	87.84
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	87.79
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	87.78
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	87.76
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	87.72
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	87.7
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	87.69
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	87.67
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	87.63
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	87.51
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	87.51
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	87.5
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	87.5
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	87.49
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	87.46
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	87.38
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	87.34
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	87.26
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	87.21
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	87.16
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	87.08
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	87.03
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	86.95
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	86.93
1x5o_A	114	RNA binding motif, single-stranded interacting pro	86.92
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	86.92
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	86.82
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	86.79
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	86.67
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	86.67
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	86.65
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	86.6
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	86.29
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	86.22
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	86.18
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	85.98
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	85.95
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	85.66
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	85.29
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	85.27
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	85.25
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	85.05
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	84.95
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	84.88
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	84.84
1x5p_A	97	Negative elongation factor E; structure genomics,	84.65
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	84.45
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	84.1
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	84.08
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	84.06
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	83.84
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	83.79
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	83.76
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	83.71
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	83.46
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	83.42
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	82.77
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	82.77
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	82.72
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	82.69
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	82.34
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	82.3
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	82.25
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	82.02
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	82.02
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	81.52
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	81.37
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	81.36
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	81.08
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	80.67
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	80.66
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	80.57
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	80.46
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	80.46
2dis_A	109	Unnamed protein product; structural genomics, RRM	80.3
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	80.05

>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}

Probab=98.40  E-value=6.9e-08  Score=92.23  Aligned_cols=75  Identities=28%  Similarity=0.488  Sum_probs=62.2

Q ss_pred             CHHHHHHHHHhcCCcccccccccccccccCCCCCcCCCCCCCcccCCCCCCCCchhHHhhhchhhhhhhHHHHhhhcC
Q psy7101          53 SAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDEHFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR  130 (130)
Q Consensus        53 s~~tA~~iY~e~dG~E~e~s~~~lDLRFVPDd~~Fd~~~~~~~t~~P~~s~YkP~~~i~~~L~~iRe~h~~~iselAr  130 (130)
                      +...+++||+++..+++.|++.+-...||+...+|+...  .+|++|.. +.+|+++|+++|++||++|.+|+++|||
T Consensus       291 ~l~rl~kIfK~~pVVPl~gDm~i~p~s~lk~~~~~~~~~--s~wp~~~~-~~~~~y~i~~~l~~~r~~~~~~~~~la~  365 (1253)
T 3p8c_A          291 NLSKIDKYFKQLQVVPLFGDMQIELARYIKTSAHYEENK--SRWTCTSS-GSSPQYNICEQMIQIREDHMRFISELAR  365 (1253)
T ss_dssp             CHHHHHHHHHHSCEEEEETTEEEETHHHHHTSTTTGGGG--GGCSTTCC--------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhCCcccCcCccccCHHHHHhhCCCcccch--hcCCCCCC-CccchhhHHhhhHHHHHHHHHHHHHHHH
Confidence            688999999999999999999999999999999997542  36888775 7999999999999999999999999995

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=92.28  E-value=0.15  Score=34.75  Aligned_cols=36  Identities=14%  Similarity=0.268  Sum_probs=30.0

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      =||.|+|.+.+.|.+..+.++|..+.+....+-++|
T Consensus       131 g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~  166 (167)
T 1fxl_A          131 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF  166 (167)
T ss_dssp             EEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             ceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence            479999999999999999999999988654454443

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=92.16  E-value=0.15  Score=36.33  Aligned_cols=37  Identities=19%  Similarity=0.319  Sum_probs=31.7

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV   81 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV   81 (130)
                      |+|.|||.+.+.|.+.-+.|+|.++.+....|.+.|-
T Consensus        63 f~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A   99 (124)
T 2e5i_A           63 IQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA   99 (124)
T ss_dssp             EEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred             CEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence            4799999999999999999999999986555666654

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=91.65  E-value=0.2  Score=32.47  Aligned_cols=35  Identities=17%  Similarity=0.433  Sum_probs=29.2

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+....|-++|
T Consensus        55 ~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~   89 (97)
T 1why_A           55 FAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF   89 (97)
T ss_dssp             CEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence            89999999999999999999999984445555544

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=91.65  E-value=0.19  Score=34.45  Aligned_cols=36  Identities=17%  Similarity=0.251  Sum_probs=30.4

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      -||.|+|.+.+.|.+..+.++|..+.+....|-++|
T Consensus       132 g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~  167 (168)
T 1b7f_A          132 GVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL  167 (168)
T ss_dssp             EEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             eEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence            389999999999999999999999988665555443

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=91.55  E-value=0.15  Score=37.00  Aligned_cols=39  Identities=15%  Similarity=0.272  Sum_probs=33.6

Q ss_pred             ceeeEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101          43 KYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV   81 (130)
Q Consensus        43 rYyyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV   81 (130)
                      |=++|-|||.+++.|.+-.+.|||.++.+.+..|.+.|-
T Consensus        65 ~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a  103 (130)
T 3zzy_A           65 NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS  103 (130)
T ss_dssp             TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred             CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence            456799999999999999999999999986666666665

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=91.45  E-value=0.2  Score=31.40  Aligned_cols=29  Identities=28%  Similarity=0.446  Sum_probs=26.5

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      =||.|+|.+.+.|.+..+.++|..+.+..
T Consensus        48 g~afV~f~~~~~a~~A~~~l~g~~~~g~~   76 (88)
T 4a8x_A           48 GYAYVEFENPDEAEKALKHMDGGQIDGQE   76 (88)
T ss_dssp             SEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             cEEEEEEecHHHHHHHHHHcCCCeECCeE
Confidence            48999999999999999999999998754

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.26  E-value=0.28  Score=34.59  Aligned_cols=34  Identities=15%  Similarity=0.179  Sum_probs=29.8

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDL   78 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDL   78 (130)
                      =+|.|+|++++.|..-.++++|.++.+-...+++
T Consensus        47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~   80 (96)
T 2diu_A           47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF   80 (96)
T ss_dssp             TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred             CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence            3899999999999999999999999987755543

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=90.19  E-value=0.29  Score=31.57  Aligned_cols=34  Identities=21%  Similarity=0.311  Sum_probs=28.6

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      -||.|+|.+.+.|.+..+.++|..+.+  ..|-++|
T Consensus        45 g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~   78 (96)
T 2x1f_A           45 GYAFIEFRDLESSASAVRNLNGYQLGS--RFLKCGY   78 (96)
T ss_dssp             SEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEE
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCeECC--eEEEEEE
Confidence            489999999999999999999999987  4444444

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=90.17  E-value=0.3  Score=30.53  Aligned_cols=27  Identities=19%  Similarity=0.188  Sum_probs=25.2

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESS   72 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s   72 (130)
                      ||.|+|.|.+.|.+..+.++|..+.+.
T Consensus        50 ~afV~f~~~~~A~~A~~~l~g~~~~g~   76 (87)
T 3bs9_A           50 YGFVSFFNKWDAENAIQQMGGQWLGGR   76 (87)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             EEEEEECCHHHHHHHHHHcCCCEECCe
Confidence            899999999999999999999988764

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=90.05  E-value=0.3  Score=30.42  Aligned_cols=27  Identities=26%  Similarity=0.300  Sum_probs=25.2

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESS   72 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s   72 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+.
T Consensus        51 ~afV~f~~~~~a~~A~~~l~g~~~~g~   77 (85)
T 3mdf_A           51 FAFVEFELAEDAAAAIDNMNESELFGR   77 (85)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEECCc
Confidence            899999999999999999999998764

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=90.02  E-value=0.3  Score=31.04  Aligned_cols=27  Identities=26%  Similarity=0.576  Sum_probs=25.2

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESS   72 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s   72 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+.
T Consensus        59 ~afV~f~~~~~A~~A~~~l~g~~~~g~   85 (95)
T 2cqc_A           59 FAFVYFENVDDAKEAKERANGMELDGR   85 (95)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            899999999999999999999998763

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=89.94  E-value=0.3  Score=30.63  Aligned_cols=28  Identities=18%  Similarity=0.318  Sum_probs=25.8

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESS   72 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s   72 (130)
                      =||.|+|.+.+.|.+.-++++|..+.+.
T Consensus        48 g~afV~f~~~~~A~~Ai~~lng~~~~g~   75 (81)
T 2krb_A           48 GYIFLEYASPAHAVDAVKNADGYKLDKQ   75 (81)
T ss_dssp             CEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred             EEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence            3899999999999999999999998774

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=89.80  E-value=0.34  Score=31.39  Aligned_cols=28  Identities=14%  Similarity=0.399  Sum_probs=25.7

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+..
T Consensus        56 ~afV~f~~~~~A~~A~~~l~g~~~~g~~   83 (102)
T 1x5s_A           56 FGFVTFENIDDAKDAMMAMNGKSVDGRQ   83 (102)
T ss_dssp             EEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence            8999999999999999999999987643

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.71  E-value=0.4  Score=30.55  Aligned_cols=34  Identities=21%  Similarity=0.477  Sum_probs=28.5

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV   81 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV   81 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+  ..|-+++.
T Consensus        49 ~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~a   82 (95)
T 2dnz_A           49 YGFITFSDSECARRALEQLNGFELAG--RPMRVGHV   82 (95)
T ss_dssp             EEEEEESCHHHHHHHHHHHTTCCSSS--SCCEEEES
T ss_pred             EEEEEECCHHHHHHHHHHhCCCeeCC--cEEEEEEc
Confidence            89999999999999999999999876  44555443

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.69  E-value=0.32  Score=30.96  Aligned_cols=27  Identities=15%  Similarity=0.177  Sum_probs=25.2

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESS   72 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s   72 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+.
T Consensus        60 ~afV~f~~~~~A~~A~~~l~g~~~~g~   86 (94)
T 2e5h_A           60 VAFILFLDKDSAQNCTRAINNKQLFGR   86 (94)
T ss_dssp             CEEEEESCHHHHHHHHHHTTTEEETTE
T ss_pred             EEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence            899999999999999999999998764

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=89.68  E-value=0.35  Score=29.99  Aligned_cols=28  Identities=21%  Similarity=0.387  Sum_probs=25.6

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESS   72 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s   72 (130)
                      =||.|+|.+.+.|.+..+.++|..+.+.
T Consensus        44 g~afV~f~~~~~a~~a~~~l~g~~~~g~   71 (83)
T 3md1_A           44 GYGFVSFTSQDDAQNAMDSMQGQDLNGR   71 (83)
T ss_dssp             EEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred             ceEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence            3899999999999999999999998763

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=89.66  E-value=0.36  Score=31.04  Aligned_cols=34  Identities=18%  Similarity=0.416  Sum_probs=28.6

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      -||.|+|.+.+.|.+..+.++|..+.+.  .|-+++
T Consensus        51 g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~V~~   84 (98)
T 2cpf_A           51 GFGFVEYKKPEQAQKALKQLQGHTVDGH--KLEVRI   84 (98)
T ss_dssp             EEEEEEESSHHHHHHHHHHSTTCEETTE--ECEEEC
T ss_pred             cEEEEEECCHHHHHHHHHHhCCCeeCCe--EEEEEE
Confidence            4899999999999999999999998864  454444

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.50  E-value=0.46  Score=30.24  Aligned_cols=28  Identities=11%  Similarity=0.198  Sum_probs=25.6

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+..
T Consensus        44 ~afV~f~~~~~A~~A~~~l~g~~~~g~~   71 (90)
T 2dnq_A           44 YGFVHIEDKTAAEDAIRNLHHYKLHGVN   71 (90)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred             EEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence            8999999999999999999999887644

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=89.43  E-value=0.38  Score=30.96  Aligned_cols=34  Identities=29%  Similarity=0.384  Sum_probs=28.4

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      =||.|+|.+.+.|.+..+.++|..+.+.  .|-+++
T Consensus        51 g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~V~~   84 (99)
T 1whw_A           51 GFAFVTFMFPEHAVKAYAEVDGQVFQGR--MLHVLP   84 (99)
T ss_dssp             SEEEEEESSHHHHHHHHHHTTTEESSSC--EEEEEE
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCEECCc--EEEEEE
Confidence            4899999999999999999999998863  444444

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=89.39  E-value=0.48  Score=29.99  Aligned_cols=28  Identities=29%  Similarity=0.395  Sum_probs=25.6

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESS   72 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s   72 (130)
                      =||.|+|.+.+.|.+..+.++|..+.+.
T Consensus        49 g~afV~f~~~~~a~~a~~~l~g~~~~g~   76 (92)
T 2dgv_A           49 GCGVVKFESPEVAERACRMMNGMKLSGR   76 (92)
T ss_dssp             EEEEEEESSHHHHHHHHHHHTTCCBTTB
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence            4799999999999999999999998764

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=89.38  E-value=0.41  Score=36.09  Aligned_cols=37  Identities=16%  Similarity=0.294  Sum_probs=31.9

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV   81 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV   81 (130)
                      .||.|||.+.+.|.+..+.|+|.++.+.+..|.+.|-
T Consensus        85 gfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A  121 (164)
T 1sjr_A           85 FQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS  121 (164)
T ss_dssp             EEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred             CEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence            5999999999999999999999999875566666664

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=89.35  E-value=0.34  Score=31.68  Aligned_cols=34  Identities=21%  Similarity=0.372  Sum_probs=28.5

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV   81 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV   81 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+  ..|-++|.
T Consensus        72 ~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~a  105 (107)
T 3ulh_A           72 TADVHFERKADALKAMKQYNGVPLDG--RPMNIQLV  105 (107)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTCEETT--EECEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEeCC--cEEEEEEe
Confidence            99999999999999999999999976  44444443

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.23  E-value=0.39  Score=30.72  Aligned_cols=33  Identities=27%  Similarity=0.486  Sum_probs=28.3

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+  ..|-+++
T Consensus        46 ~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~   78 (92)
T 2dgt_A           46 YAFVHMERAEDAVEAIRGLDNTEFQG--KRMHVQL   78 (92)
T ss_dssp             EEEEEESCHHHHHHHHHHHTTEEETT--EEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHhCCCeeCC--cEEEEEE
Confidence            99999999999999999999999976  4455444

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=89.11  E-value=0.4  Score=32.45  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=29.2

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV   81 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV   81 (130)
                      =||.|+|.+.+.|.+..+.++|.++.+-.  +.+.||
T Consensus        52 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~--~~~~~i   86 (115)
T 3beg_B           52 GTGVVEFVRKEDMTYAVRKLDNTKFRSHE--GETAYI   86 (115)
T ss_dssp             SEEEEEESSHHHHHHHHHHHTTCBCCCTT--SCCCBC
T ss_pred             CEEEEEECCHHHHHHHHHHhCCCEECCcE--eeeEEE
Confidence            58999999999999999999999998743  444444

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.96  E-value=0.36  Score=30.81  Aligned_cols=28  Identities=18%  Similarity=0.311  Sum_probs=25.7

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+..
T Consensus        50 ~afV~f~~~~~A~~A~~~l~g~~~~g~~   77 (96)
T 1x5t_A           50 YAFINFASFDASDAAIEAMNGQYLCNRP   77 (96)
T ss_dssp             EEEEEBSSHHHHHHHHHTTTTCEETTEE
T ss_pred             EEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence            8999999999999999999999987643

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=88.95  E-value=0.36  Score=30.18  Aligned_cols=27  Identities=19%  Similarity=0.473  Sum_probs=24.6

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESS   72 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s   72 (130)
                      =||.|+|.+.+.|.+.. .++|..+.+.
T Consensus        54 g~afV~f~~~~~a~~A~-~l~g~~~~g~   80 (87)
T 2hzc_A           54 NFAFLEFRSVDETTQAM-AFDGIIFQGQ   80 (87)
T ss_dssp             SEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred             cEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence            48999999999999999 9999998764

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.95  E-value=0.48  Score=30.68  Aligned_cols=29  Identities=21%  Similarity=0.359  Sum_probs=26.1

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      =||.|+|.+.+.|.+..+.++|..+.+..
T Consensus        51 g~afV~f~~~~~a~~A~~~l~g~~~~g~~   79 (104)
T 1p1t_A           51 GYGFCEYQDQETALSAMRNLNGREFSGRA   79 (104)
T ss_dssp             EEEEEECSCHHHHHHHHHHSSSBSCSSSC
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence            48999999999999999999999987643

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=88.92  E-value=0.44  Score=32.35  Aligned_cols=35  Identities=14%  Similarity=0.345  Sum_probs=29.3

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV   81 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV   81 (130)
                      -||.|+|.+.+.|.+..+.++|..+.+..  |-+++-
T Consensus        49 g~afV~F~~~~~A~~Ai~~l~g~~~~g~~--l~V~~a   83 (116)
T 2fy1_A           49 GFAFITFENPADAKNAAKDMNGKSLHGKA--IKVEQA   83 (116)
T ss_dssp             CEEEEECSSHHHHHHHHHHCSSCBCSSSB--CEEEEC
T ss_pred             cEEEEEECCHHHHHHHHHHhCCCEECCEE--EEEEEC
Confidence            48999999999999999999999998744  544443

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=88.86  E-value=0.41  Score=32.26  Aligned_cols=31  Identities=16%  Similarity=0.350  Sum_probs=27.1

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRV   76 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~l   76 (130)
                      ||.|+|.+.+.|.+..+.|+|..+.+....+
T Consensus        66 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v   96 (126)
T 3ex7_B           66 YTLVEYETYKEAQAAMEGLNGQDLMGQPISV   96 (126)
T ss_dssp             CEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred             EEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence            8999999999999999999999997754333

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=88.83  E-value=0.43  Score=30.45  Aligned_cols=39  Identities=15%  Similarity=0.213  Sum_probs=32.8

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccccCCCCC
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTE   86 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVPDd~~   86 (130)
                      ||.|+|.+.+.|.+..+.++|.++.+  ..+-+++-|.+..
T Consensus        42 ~afV~f~~~~~a~~Ai~~l~g~~~~g--~~l~V~~a~~~~~   80 (88)
T 1wg1_A           42 TAFVTLLNGEQAQNAIQMFHQYSFRG--KDLIVQLQPTDAL   80 (88)
T ss_dssp             EEEECCSCHHHHHHHHHHHTTEEETT--EEEEEEECCCCCC
T ss_pred             EEEEEECCHHHHHHHHHHhCCCeECC--cEEEEEEcCCCce
Confidence            89999999999999999999999976  4566666666553

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.70  E-value=0.43  Score=31.04  Aligned_cols=33  Identities=18%  Similarity=0.485  Sum_probs=28.0

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+.  .|-++|
T Consensus        59 ~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~v~~   91 (103)
T 2cq0_A           59 FAFISFHRREDAARAIAGVSGFGYDHL--ILNVEW   91 (103)
T ss_dssp             EEEEEESSHHHHHHHHHHTTTCEETTE--ECEEEE
T ss_pred             EEEEEECCHHHHHHHHHHcCCCeeCCc--EEEEEE
Confidence            899999999999999999999998764  444444

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=88.62  E-value=0.54  Score=30.43  Aligned_cols=29  Identities=10%  Similarity=0.076  Sum_probs=26.3

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      =||.|+|.+.+.|.+..+.++|..+.+..
T Consensus        46 g~afV~f~~~~~A~~A~~~l~g~~~~g~~   74 (96)
T 2kvi_A           46 AFGFIQFDNPQSVRDAIECESQEMNFGKK   74 (96)
T ss_dssp             TEEEEEESCHHHHHHHHHHHTCSSCBTTT
T ss_pred             CEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence            48999999999999999999999988644

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.61  E-value=0.38  Score=31.16  Aligned_cols=33  Identities=24%  Similarity=0.416  Sum_probs=28.0

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+.  .|-++|
T Consensus        56 ~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~V~~   88 (102)
T 2fc8_A           56 FGFVDFNSEEDAKAAKEAMEDGEIDGN--KVTLDW   88 (102)
T ss_dssp             EEEEECSSHHHHHHHHHHHTTCEETTE--ECEEEE
T ss_pred             EEEEEECCHHHHHHHHHHhCCCeECCe--EEEEEE
Confidence            899999999999999999999998864  344444

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.60  E-value=0.41  Score=30.97  Aligned_cols=29  Identities=21%  Similarity=0.320  Sum_probs=26.1

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      =||.|+|.+.+.|.+..+.++|..+.+..
T Consensus        59 g~afV~f~~~~~a~~A~~~l~g~~~~g~~   87 (100)
T 2do4_A           59 GLAYVEYENESQASQAVMKMDGMTIKENI   87 (100)
T ss_dssp             EEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            48999999999999999999999987643

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=88.60  E-value=0.53  Score=30.63  Aligned_cols=29  Identities=14%  Similarity=0.298  Sum_probs=26.0

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      =||.|+|.+.+.|.+..+.++|..+.+..
T Consensus        66 g~afV~f~~~~~a~~A~~~l~g~~~~g~~   94 (106)
T 1p27_B           66 GYTLVEYETYKEAQAAMEGLNGQDLMGQP   94 (106)
T ss_dssp             EEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred             eEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence            48999999999999999999999888643

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=88.58  E-value=0.46  Score=30.52  Aligned_cols=34  Identities=24%  Similarity=0.249  Sum_probs=28.5

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      =||.|+|.+.+.|.+..+.++|..+.+..  |-+++
T Consensus        58 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~--l~V~~   91 (98)
T 2cqp_A           58 GEAMVAFESRDEATAAVIDLNDRPIGSRK--VKLVL   91 (98)
T ss_dssp             EEEEEEESCHHHHHHHHHHTTTCEETTEE--CEEEE
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCeeCCeE--EEEEE
Confidence            48999999999999999999999988743  44444

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.57  E-value=0.51  Score=31.19  Aligned_cols=33  Identities=18%  Similarity=0.245  Sum_probs=27.8

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+.  .|-++|
T Consensus        69 ~afV~f~~~~~a~~Ai~~l~g~~~~g~--~l~v~~  101 (115)
T 2cpx_A           69 QAFITFPNKEIAWQALHLVNGYKLYGK--ILVIEF  101 (115)
T ss_dssp             EEEEECSSHHHHHHHHHHSTTCBCSSC--BCEEEE
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEeCCc--EEEEEE
Confidence            899999999999999999999998653  444444

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.52  E-value=0.49  Score=30.45  Aligned_cols=29  Identities=21%  Similarity=0.326  Sum_probs=26.4

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      =||.|+|.+.+.|.+..+.++|..+.+..
T Consensus        53 g~afV~f~~~~~a~~A~~~l~g~~~~g~~   81 (99)
T 2div_A           53 GYCFVEFADLATAEKCLHKINGKPLPGAT   81 (99)
T ss_dssp             EEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred             CEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence            38999999999999999999999988755

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.52  E-value=0.42  Score=33.82  Aligned_cols=37  Identities=22%  Similarity=0.437  Sum_probs=29.9

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccc---ccccccccccccC
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEY---ESSATRVDLRFVP   82 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~---e~s~~~lDLRFVP   82 (130)
                      ||.|+|.+.+.|.+..++++|.++   .+.+..|-+.|+-
T Consensus        65 faFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~  104 (114)
T 2cq2_A           65 YSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE  104 (114)
T ss_dssp             CEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEES
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecc
Confidence            899999999999999999999988   2234556666654

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=88.51  E-value=0.47  Score=32.08  Aligned_cols=36  Identities=17%  Similarity=0.239  Sum_probs=29.1

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccccC
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVP   82 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVP   82 (130)
                      =||-|+|.+.+.|.+..++++|..|.+-  .+-..|.|
T Consensus        69 G~~fV~f~~~~~A~~A~~~lng~~~~Gr--~i~v~~sp  104 (104)
T 1jmt_A           69 GNVYVKFRREEDAEKAVIDLNNRWFNGQ--PIHAELSP  104 (104)
T ss_dssp             EEEEEEESCHHHHHHHHHHHTTCEETTE--ECCEEECC
T ss_pred             EEEEEEECCHHHHHHHHHHHCCCEECCE--EEEEEEcC
Confidence            3899999999999999999999998764  34444443

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.44  E-value=0.22  Score=31.27  Aligned_cols=26  Identities=31%  Similarity=0.401  Sum_probs=24.2

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYES   71 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~   71 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+
T Consensus        49 ~afV~f~~~~~a~~A~~~l~g~~~~g   74 (85)
T 1x4e_A           49 YGFVDFDSPSAAQKAVTALKASGVQA   74 (85)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred             EEEEEECCHHHHHHHHHHhcCCeEee
Confidence            79999999999999999999998765

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=88.39  E-value=0.45  Score=31.56  Aligned_cols=28  Identities=21%  Similarity=0.457  Sum_probs=25.8

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+..
T Consensus        63 ~afV~f~~~~~A~~Ai~~lng~~~~gr~   90 (99)
T 4fxv_A           63 YGFVNYVTAKDAERAINTLNGLRLQSKT   90 (99)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             cEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            8999999999999999999999998743

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.36  E-value=0.5  Score=30.57  Aligned_cols=28  Identities=11%  Similarity=0.248  Sum_probs=25.7

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+..
T Consensus        58 ~afV~f~~~~~a~~A~~~l~g~~~~g~~   85 (97)
T 2e5j_A           58 RAFLHYPDSAAAQQAVSCLQGLRLGTDT   85 (97)
T ss_dssp             EEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence            8999999999999999999999987644

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.31  E-value=0.37  Score=30.76  Aligned_cols=34  Identities=18%  Similarity=0.303  Sum_probs=28.1

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCC-cccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDG-MEYESSATRVDLRF   80 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG-~E~e~s~~~lDLRF   80 (130)
                      =||.|+|.+.+.|.+..+.++| ..+.+.  .|-+++
T Consensus        45 g~afV~f~~~~~A~~A~~~l~g~~~~~g~--~l~v~~   79 (93)
T 2cqh_A           45 GYAFVDYPDQNWAIRAIETLSGKVELHGK--IMEVDY   79 (93)
T ss_dssp             TEEEECCSCHHHHHHHHHHHTTTCEETTE--ECEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHccCCeeECCE--EEEEEE
Confidence            3899999999999999999999 888764  344443

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.29  E-value=0.44  Score=31.51  Aligned_cols=28  Identities=21%  Similarity=0.356  Sum_probs=25.7

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+..
T Consensus        67 ~afV~f~~~~~A~~Ai~~l~g~~~~g~~   94 (113)
T 2cpe_A           67 DATVSYEDPPTAKAAVEWFDGKDFQGSK   94 (113)
T ss_dssp             EEEEEBSSHHHHHHHHHHHTTCEETTEE
T ss_pred             EEEEEECCHHHHHHHHHHcCCCccCCCE
Confidence            8999999999999999999999988633

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.29  E-value=0.72  Score=29.87  Aligned_cols=29  Identities=28%  Similarity=0.446  Sum_probs=25.9

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcc-ccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGME-YESSA   73 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E-~e~s~   73 (130)
                      =||.|+|.+.+.|.+..+.++|.. +.+..
T Consensus        52 g~afV~f~~~~~a~~A~~~l~g~~~~~g~~   81 (104)
T 2dhg_A           52 GYGFVKFTDELEQKRALTECQGAVGLGSKP   81 (104)
T ss_dssp             EEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred             ceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence            389999999999999999999999 77643

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.27  E-value=0.49  Score=30.75  Aligned_cols=33  Identities=15%  Similarity=0.386  Sum_probs=27.8

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+..  |-+++
T Consensus        57 ~afV~f~~~~~a~~A~~~l~g~~~~g~~--l~v~~   89 (103)
T 2cq3_A           57 FGFVTFENSADADRAREKLHGTVVEGRK--IEVNN   89 (103)
T ss_dssp             EEEEEESCHHHHHHHHHHHTTCEETTEE--CEEEE
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEECCEE--EEEEE
Confidence            8999999999999999999999987643  44443

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=88.24  E-value=0.5  Score=31.30  Aligned_cols=34  Identities=15%  Similarity=0.219  Sum_probs=29.3

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV   81 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV   81 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+  ..|-++|-
T Consensus        59 ~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~a   92 (115)
T 2dgo_A           59 YGFVSFFNKWDAENAIQQMGGQWLGG--RQIRTNWA   92 (115)
T ss_dssp             EEEEEESSHHHHHHHHHHTTTCEETT--EECEEEES
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEEc
Confidence            99999999999999999999999887  44555554

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.21  E-value=0.41  Score=30.45  Aligned_cols=33  Identities=21%  Similarity=0.460  Sum_probs=28.0

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+.  .|-+++
T Consensus        45 ~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~   77 (90)
T 2dnp_A           45 YAFVHMEKEADAKAAIAQLNGKEVKGK--RINVEL   77 (90)
T ss_dssp             CEEEEESCHHHHHHHHHHHTTCEETTE--ECEEEE
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEECCc--EEEEEE
Confidence            999999999999999999999998764  344444

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=88.21  E-value=0.43  Score=30.49  Aligned_cols=34  Identities=18%  Similarity=0.372  Sum_probs=28.3

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      =||.|+|.|.+.|.+..+.++|..+.+  ..|-++|
T Consensus        52 g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~   85 (97)
T 1nu4_A           52 GQAFVIFKEVSSATNALRSMQGFPFYD--KPMRIQY   85 (97)
T ss_dssp             TCEEEEESSHHHHHHHHHHHTTCEETT--EECEEEE
T ss_pred             cEEEEEeCCHHHHHHHHHHhCCCEECC--cEEEEEE
Confidence            489999999999999999999999865  4454444

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.19  E-value=0.4  Score=31.07  Aligned_cols=33  Identities=30%  Similarity=0.542  Sum_probs=27.9

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+.  .|-++|
T Consensus        55 ~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~v~~   87 (101)
T 2fc9_A           55 YAFIEFASFEDAKEALNSCNKREIEGR--AIRLEL   87 (101)
T ss_dssp             EEEEECSSHHHHHHHHHHTSSEEETTE--EEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEeCCe--EEEEEE
Confidence            899999999999999999999999863  344443

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=88.16  E-value=0.31  Score=31.24  Aligned_cols=28  Identities=21%  Similarity=0.207  Sum_probs=24.7

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+.-+.++|.++.+..
T Consensus        47 ~afV~f~~~~~a~~Ai~~l~g~~~~gr~   74 (90)
T 3p5t_L           47 FALVGVGSEASSKKLMDLLPKRELHGQN   74 (90)
T ss_dssp             EEEECC-CHHHHHHHHHHGGGSCSSSCC
T ss_pred             EEEEEECCHHHHHHHHHHcCCCeeCCEE
Confidence            8999999999999999999999987744

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=87.89  E-value=0.57  Score=30.45  Aligned_cols=33  Identities=21%  Similarity=0.214  Sum_probs=27.8

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+.  .|-+++
T Consensus        59 ~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~   91 (105)
T 1x5u_A           59 YGFVEFLSEEDADYAIKIMDMIKLYGK--PIRVNK   91 (105)
T ss_dssp             CEEEEESSHHHHHHHHHHSSSCBCSSC--BCEEEE
T ss_pred             EEEEEECCHHHHHHHHHHhCCCeECCe--EEEEEE
Confidence            899999999999999999999998763  344443

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=87.84  E-value=0.39  Score=31.10  Aligned_cols=34  Identities=21%  Similarity=0.265  Sum_probs=28.3

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      -||.|+|.+.+.|.+..+.++|..+.+.  .|-++|
T Consensus        55 g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~V~~   88 (102)
T 2cqb_A           55 GFAFVEFELAEDAAAAIDNMNESELFGR--TIRVNL   88 (102)
T ss_dssp             SEEEECCSSHHHHHHHHHHHTTEEETTE--EEEEEE
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCEECCc--EEEEEe
Confidence            3899999999999999999999998764  444444

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=87.79  E-value=0.5  Score=30.98  Aligned_cols=28  Identities=11%  Similarity=0.125  Sum_probs=25.7

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESS   72 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s   72 (130)
                      =||.|+|.+.+.|.+..+.++|..+.+.
T Consensus        58 g~afV~f~~~~~A~~Ai~~l~g~~~~g~   85 (97)
T 2xnq_A           58 AFGFIQFDNPQSVRDAIEXESQEMNFGK   85 (97)
T ss_dssp             SEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred             CEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence            4899999999999999999999998764

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=87.78  E-value=0.61  Score=30.17  Aligned_cols=28  Identities=32%  Similarity=0.404  Sum_probs=25.6

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+..
T Consensus        65 ~afV~f~~~~~a~~Ai~~l~g~~~~g~~   92 (99)
T 2la6_A           65 EATVSFDDPPSAKAAIDWFDGKEFSGNP   92 (99)
T ss_dssp             EEEEEBSSHHHHHHHHHHHTTCBSSSSB
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence            8999999999999999999999987643

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=87.76  E-value=0.46  Score=31.09  Aligned_cols=34  Identities=29%  Similarity=0.589  Sum_probs=29.1

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV   81 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV   81 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+.  .|-++|-
T Consensus        47 ~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~a   80 (103)
T 2dgu_A           47 YAFIHFDERDGAVKAMEEMNGKDLEGE--NIEIVFA   80 (103)
T ss_dssp             CEEEEESSHHHHHHHHHHHTTEEETTE--EEEEEEC
T ss_pred             EEEEEeCCHHHHHHHHHHHCCCccCCC--EEEEEEc
Confidence            899999999999999999999998864  4555554

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.72  E-value=0.64  Score=30.17  Aligned_cols=34  Identities=26%  Similarity=0.348  Sum_probs=28.5

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      -||.|+|.+.+.|.+..+.++|..+.+  ..|-++|
T Consensus        56 g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~V~~   89 (103)
T 2d9p_A           56 GFGFVCFSSPEEATKAVTEMNGRIVAT--KPLYVAL   89 (103)
T ss_dssp             EEEEEEESSHHHHHHHHHHHTTCBSSS--SBCEEEE
T ss_pred             EEEEEEECCHHHHHHHHHHhCCCEeCC--cEEEEEE
Confidence            399999999999999999999999866  4455444

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=87.70  E-value=0.53  Score=30.92  Aligned_cols=29  Identities=21%  Similarity=0.289  Sum_probs=26.1

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      =||.|+|.+.+.|.+..+.++|..+.+..
T Consensus        69 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~   97 (110)
T 1oo0_B           69 GYALVEYETHKQALAAKEALNGAEIMGQT   97 (110)
T ss_dssp             SEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             eEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence            38999999999999999999999987643

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=87.69  E-value=0.53  Score=30.57  Aligned_cols=34  Identities=18%  Similarity=0.277  Sum_probs=28.9

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      -||.|+|.+.+.|.+..+.++|..+.+  ..|-++|
T Consensus        56 g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~   89 (103)
T 2cqi_A           56 PYCFVEFYEHRDAAAALAAMNGRKILG--KEVKVNW   89 (103)
T ss_dssp             CEEEEEESSHHHHHHHHHHHTTEEETT--EEEEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHhCCCCcCC--CeEEEEE
Confidence            499999999999999999999999886  4455554

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=87.67  E-value=0.65  Score=32.31  Aligned_cols=28  Identities=25%  Similarity=0.548  Sum_probs=25.7

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+..
T Consensus        90 ~afV~F~~~~~A~~Ai~~lng~~i~g~~  117 (129)
T 2kxn_B           90 FAFVYFENVDDAKEAKERANGMELDGRR  117 (129)
T ss_dssp             EEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            8999999999999999999999987643

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=87.63  E-value=0.49  Score=31.46  Aligned_cols=33  Identities=18%  Similarity=0.429  Sum_probs=27.9

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+.  .|-++|
T Consensus        69 ~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~V~~  101 (115)
T 2cpz_A           69 FGFVSYDNPVSAQAAIQSMNGFQIGMK--RLKVQL  101 (115)
T ss_dssp             EEEEECSSHHHHHHHHHHHTTCEETTE--ECEEEC
T ss_pred             cEEEEECCHHHHHHHHHHcCCCEECCE--EEEEEE
Confidence            899999999999999999999998764  344443

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=87.51  E-value=0.42  Score=30.59  Aligned_cols=28  Identities=29%  Similarity=0.367  Sum_probs=25.8

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+..
T Consensus        55 ~afV~f~~~~~a~~A~~~l~g~~~~g~~   82 (96)
T 1fjc_A           55 IAYIEFKSEADAEKNLEEKQGAEIDGRS   82 (96)
T ss_dssp             EEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence            8999999999999999999999987644

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=87.51  E-value=0.55  Score=31.00  Aligned_cols=35  Identities=26%  Similarity=0.313  Sum_probs=29.2

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV   81 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV   81 (130)
                      =||.|+|.+.+.|.+..+.++|..+.+  ..|-++|-
T Consensus        62 g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a   96 (109)
T 1x4g_A           62 GYSFVRFSTHESAAHAIVSVNGTTIEG--HVVKCYWG   96 (109)
T ss_dssp             TEEEEEESSHHHHHHHHHHHTTCEETT--EECEEECC
T ss_pred             CEEEEEECCHHHHHHHHHHcCCCEECC--cEEEEEec
Confidence            489999999999999999999999886  44555553

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=87.50  E-value=0.68  Score=30.12  Aligned_cols=36  Identities=14%  Similarity=0.074  Sum_probs=28.4

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccc-ccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEY-ESSATRVDLRF   80 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~-e~s~~~lDLRF   80 (130)
                      =||.|+|.+.+.|.+..+.++|..+ .+....|-+++
T Consensus        56 g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~   92 (106)
T 2dgp_A           56 GCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKP   92 (106)
T ss_dssp             SEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE
T ss_pred             eEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEE
Confidence            3899999999999999999999885 33344555554

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=87.50  E-value=0.58  Score=30.41  Aligned_cols=36  Identities=19%  Similarity=0.242  Sum_probs=29.0

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccc-cccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESS-ATRVDLRF   80 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s-~~~lDLRF   80 (130)
                      =||.|+|.+.+.|.+..+.++|..+.+. ...|-++|
T Consensus        57 g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~   93 (105)
T 2dnh_A           57 GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF   93 (105)
T ss_dssp             EEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEE
T ss_pred             cEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEE
Confidence            4899999999999999999999998762 24444444

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=87.49  E-value=0.5  Score=32.09  Aligned_cols=29  Identities=17%  Similarity=0.133  Sum_probs=26.6

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSAT   74 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~   74 (130)
                      ||.|+|.+.+.|.+..++++|.++.+...
T Consensus        50 ~aFV~f~~~~~A~~Ai~~lng~~~~gr~i   78 (110)
T 3s8s_A           50 LARVLFTSTRGAKETVKNLHLTSVMGNII   78 (110)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence            79999999999999999999999987553

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=87.46  E-value=0.58  Score=31.00  Aligned_cols=28  Identities=18%  Similarity=0.233  Sum_probs=25.5

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+..
T Consensus        49 ~afV~f~~~~~A~~A~~~l~g~~~~g~~   76 (115)
T 3lqv_A           49 TAYVVYEDIFDAKNAVDHLSGFNVSNRY   76 (115)
T ss_dssp             CEEEEESSHHHHHHHHHHHTTCBSSSCB
T ss_pred             EEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence            8999999999999999999999987643

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=87.38  E-value=0.46  Score=30.24  Aligned_cols=28  Identities=18%  Similarity=0.292  Sum_probs=25.6

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESS   72 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s   72 (130)
                      =||.|+|.+.+.|.+..+.++|..+.+.
T Consensus        58 g~afV~f~~~~~a~~A~~~l~g~~~~g~   85 (95)
T 2ywk_A           58 SFGFVCFKHPESVSYAIALLNGIRLYGR   85 (95)
T ss_dssp             EEEEEEESSTHHHHHHHHHHTTCEETTE
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCEECCC
Confidence            3899999999999999999999998763

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=87.34  E-value=0.51  Score=30.53  Aligned_cols=33  Identities=24%  Similarity=0.433  Sum_probs=27.9

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+.  .|-++|
T Consensus        53 ~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~v~~   85 (99)
T 2cpd_A           53 YAFVHFSNREDAVEAMKALNGKVLDGS--PIEVTL   85 (99)
T ss_dssp             EEEEEESSHHHHHHHHHHHSSEEETTE--EEEEEC
T ss_pred             eEEEEeCCHHHHHHHHHHhCCCEeCCc--EEEEEE
Confidence            999999999999999999999998764  344443

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=87.26  E-value=0.71  Score=29.96  Aligned_cols=34  Identities=18%  Similarity=0.326  Sum_probs=28.8

Q ss_pred             eEEEEeCCHHHHHHHHHhc-CCccccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTEC-DGMEYESSATRVDLRFV   81 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~-dG~E~e~s~~~lDLRFV   81 (130)
                      ||.|+|.+.+.|.+..+.+ +|..+.+.  .|-++|-
T Consensus        60 ~afV~f~~~~~a~~A~~~l~~~~~~~g~--~l~v~~a   94 (107)
T 2cph_A           60 FGFVDFITKQDAKKAFNALCHSTHLYGR--RLVLEWA   94 (107)
T ss_dssp             EEEEEESSHHHHHHHHHHHHTCCBSSSC--BCEEEEC
T ss_pred             eEEEEECCHHHHHHHHHHhccCCeECCC--EEEEEeC
Confidence            8999999999999999999 99999864  4555543

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=87.21  E-value=0.61  Score=29.64  Aligned_cols=29  Identities=21%  Similarity=0.201  Sum_probs=26.0

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      =||.|+|.+.+.|.+..+.++|..+.+..
T Consensus        58 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~   86 (95)
T 2ek1_A           58 GEAMVAFESRDEATAAVIDLNDRPIGSRK   86 (95)
T ss_dssp             EEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence            48999999999999999999999987643

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=87.16  E-value=0.73  Score=30.84  Aligned_cols=33  Identities=21%  Similarity=0.476  Sum_probs=27.7

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+.  .|-+++
T Consensus        70 ~afV~F~~~~~A~~Ai~~l~g~~i~g~--~l~V~~  102 (108)
T 2jrs_A           70 YGFITFSDSECAKKALEQLNGFELAGR--PMKVGH  102 (108)
T ss_dssp             EEEEEESCHHHHHHHHHHHTTCCSSSS--CCEEEC
T ss_pred             EEEEEECCHHHHHHHHHHcCCCEECCE--EEEEEE
Confidence            899999999999999999999988764  344443

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.08  E-value=0.56  Score=30.91  Aligned_cols=34  Identities=12%  Similarity=0.160  Sum_probs=28.8

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      -||.|+|.+.+.|.+..+.++|..+.+.  .|-+++
T Consensus        57 g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~   90 (114)
T 2do0_A           57 GIGTVTFEQSIEAVQAISMFNGQLLFDR--PMHVKM   90 (114)
T ss_dssp             EEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEE
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCEeCCC--EEEEEE
Confidence            3899999999999999999999999764  455554

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=87.03  E-value=0.55  Score=30.92  Aligned_cols=33  Identities=27%  Similarity=0.572  Sum_probs=27.7

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+.  .|-++|
T Consensus        63 ~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~V~~   95 (109)
T 1x4a_A           63 FAFVEFEDPRDAEDAVYGRDGYDYDGY--RLRVEF   95 (109)
T ss_dssp             CEEEEESCHHHHHHHHHHHTTCEETTE--ECEEEC
T ss_pred             EEEEEECCHHHHHHHHHHcCCCEECCe--EEEEEE
Confidence            899999999999999999999988763  344444

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=86.95  E-value=0.65  Score=31.25  Aligned_cols=38  Identities=18%  Similarity=0.236  Sum_probs=32.0

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccccCCCC
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDT   85 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVPDd~   85 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+  ..|-+.|-+...
T Consensus        48 ~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~a~~~~   85 (111)
T 1whx_A           48 TAIVEFLEPLEARKAFRHLAYSKFHH--VPLYLEWAPIGV   85 (111)
T ss_dssp             CEEEEESCHHHHHHHHHHHTTCBSSS--SBCEEEEEETTT
T ss_pred             EEEEEeCCHHHHHHHHHHhCCCEECC--eEEEEEECCCCc
Confidence            79999999999999999999999886  446666666654

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=86.93  E-value=0.55  Score=30.48  Aligned_cols=27  Identities=19%  Similarity=0.122  Sum_probs=25.2

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESS   72 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s   72 (130)
                      ||.|+|.+.+.|.+..+.++|.++.+.
T Consensus        54 ~afV~f~~~~~A~~Ai~~l~g~~~~gr   80 (96)
T 2dgx_A           54 KAVVQMENLQDAIGAVNSLHRYKIGSK   80 (96)
T ss_dssp             CEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEECCe
Confidence            799999999999999999999998864

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=86.92  E-value=0.71  Score=30.48  Aligned_cols=27  Identities=15%  Similarity=0.206  Sum_probs=25.1

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESS   72 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s   72 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+.
T Consensus        68 ~afV~f~~~~~a~~A~~~l~g~~~~~~   94 (114)
T 1x5o_A           68 VGFARMESTEKCEAVIGHFNGKFIKTP   94 (114)
T ss_dssp             EEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEEcCC
Confidence            899999999999999999999998653

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=86.92  E-value=0.6  Score=30.91  Aligned_cols=27  Identities=22%  Similarity=0.208  Sum_probs=25.7

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYES   71 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~   71 (130)
                      =||.|+|.+.+.|.+.-+.++|.++.+
T Consensus        51 g~afV~f~~~~~a~~Ai~~l~g~~~~g   77 (108)
T 1x4c_A           51 GTGVVEFVRKEDMTYAVRKLDNTKFRS   77 (108)
T ss_dssp             TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred             CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence            599999999999999999999999987

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=86.82  E-value=0.58  Score=29.57  Aligned_cols=28  Identities=7%  Similarity=0.229  Sum_probs=25.0

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      =||.|+|.+.+ |.+....++|..+.+..
T Consensus        44 g~afV~f~~~~-a~~a~~~l~g~~~~g~~   71 (90)
T 2ki2_A           44 GFGFVEMQEES-VSEAIAKLDNTDFMGRT   71 (90)
T ss_dssp             EEEEEEECTTH-HHHHHHTSCSSCCSSSS
T ss_pred             eEEEEEECCHH-HHHHHHHhCCCEECCeE
Confidence            38999999999 99999999999987643

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=86.79  E-value=0.66  Score=29.99  Aligned_cols=28  Identities=11%  Similarity=0.218  Sum_probs=25.6

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESS   72 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s   72 (130)
                      =||.|+|.+.+.|.+..+.++|..+.+.
T Consensus        64 g~afV~f~~~~~A~~Ai~~l~g~~~~g~   91 (101)
T 2la4_A           64 GCCFIKYDTHEQAAVCIVALANFPFQGR   91 (101)
T ss_dssp             TEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred             CEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence            4899999999999999999999998864

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=86.67  E-value=0.61  Score=31.59  Aligned_cols=28  Identities=21%  Similarity=0.438  Sum_probs=25.7

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+..
T Consensus       131 ~afV~f~~~~~A~~A~~~l~g~~~~g~~  158 (166)
T 3md3_A          131 YGFVSFTSQDDAQNAMDSMQGQDLNGRP  158 (166)
T ss_dssp             EEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred             EEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence            8999999999999999999999987643

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=86.67  E-value=0.53  Score=30.45  Aligned_cols=35  Identities=17%  Similarity=0.324  Sum_probs=29.4

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV   81 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV   81 (130)
                      =||.|+|.+.+.|.+..+.++|..+.+  ..|-++|-
T Consensus        52 g~afV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a   86 (99)
T 2cpj_A           52 GFGFIRLETRTLAEIAKVELDNMPLRG--KQLRVRFA   86 (99)
T ss_dssp             TEEEEECSSSHHHHHHHHHHTTCCBTT--BCCEEEES
T ss_pred             CEEEEEECCHHHHHHHHHHhCCCEeCC--ceEEEEEc
Confidence            389999999999999999999999886  44555553

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=86.65  E-value=0.58  Score=32.35  Aligned_cols=28  Identities=18%  Similarity=0.269  Sum_probs=26.2

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+..+.+||.++.+..
T Consensus        69 faFV~F~~~e~A~~Ai~~lng~~l~Gr~   96 (111)
T 2jvr_A           69 TGALEFPSEEILVEALERLNNIEFRGSV   96 (111)
T ss_dssp             CEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred             EEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence            8999999999999999999999998754

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=86.60  E-value=1.2  Score=29.99  Aligned_cols=36  Identities=22%  Similarity=0.364  Sum_probs=30.0

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccccCC
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPD   83 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVPD   83 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+  ..|-+++-..
T Consensus        78 ~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~a~~  113 (124)
T 2kt5_A           78 TADVHFERRADALKAMKQYKGVPLDG--RPMDIQLVAS  113 (124)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTEESSS--CEEEEEEECC
T ss_pred             EEEEEECCHHHHHHHHHHcCCCEECC--cEEEEEEeCC
Confidence            89999999999999999999999876  4455555443

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.29  E-value=0.76  Score=28.58  Aligned_cols=28  Identities=11%  Similarity=0.171  Sum_probs=25.4

Q ss_pred             eeEEEEeCCHHHHHHHHHhc-CCcccccc
Q psy7101          45 YYAVVVFDSAESANKVYTEC-DGMEYESS   72 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~-dG~E~e~s   72 (130)
                      =||.|+|.+.+.|.+..+.+ +|..+.+.
T Consensus        49 g~afV~f~~~~~A~~a~~~l~~~~~~~g~   77 (85)
T 2ytc_A           49 QCAFIQFATRQAAEVAAEKSFNKLIVNGR   77 (85)
T ss_dssp             TEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred             CEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence            38999999999999999999 99988763

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.22  E-value=0.39  Score=31.27  Aligned_cols=34  Identities=21%  Similarity=0.357  Sum_probs=28.2

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      =||.|+|.+.+.|.+..+.++|..+.+.  .|-+++
T Consensus        56 g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~V~~   89 (103)
T 2dnm_A           56 GFAFVRFHDRRDAQDAEAAMDGAELDGR--ELRVQV   89 (103)
T ss_dssp             SCEEEEESSSSHHHHHHHHHSSCCBTTB--CCEEEE
T ss_pred             eEEEEEECCHHHHHHHHHHcCCCEECCc--EEEEEE
Confidence            3899999999999999999999998764  344444

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=86.18  E-value=0.68  Score=31.64  Aligned_cols=33  Identities=21%  Similarity=0.396  Sum_probs=28.0

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+..  |-+++
T Consensus        86 ~afV~f~~~~~a~~A~~~l~g~~~~g~~--l~v~~  118 (139)
T 1u6f_A           86 YGFVKFQSGSSAQQAIAGLNGFNILNKR--LKVAL  118 (139)
T ss_dssp             EEEEEESSHHHHHHHHHHTTTEECSSCE--EEEEE
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEECCeE--EEEEE
Confidence            8999999999999999999999988643  44443

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=85.98  E-value=0.69  Score=32.43  Aligned_cols=35  Identities=11%  Similarity=0.180  Sum_probs=29.3

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV   81 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV   81 (130)
                      =||.|+|.+.+.|.+..+.|+|..+.+  ..|-+.+-
T Consensus        82 g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~a  116 (156)
T 1h2v_Z           82 GFCFVEYYSRADAENAMRYINGTRLDD--RIIRTDWD  116 (156)
T ss_dssp             EEEEEEESSHHHHHHHHHHTTTSEETT--EECEEEEE
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCEECC--eEEEEEEC
Confidence            389999999999999999999999976  44555554

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=85.95  E-value=0.82  Score=30.01  Aligned_cols=27  Identities=19%  Similarity=0.231  Sum_probs=25.3

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYES   71 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~   71 (130)
                      =||.|+|.+.+.|.+.-+.++|..+.+
T Consensus        55 G~afV~f~~~~~A~~Ai~~lng~~~~g   81 (100)
T 3ns6_A           55 GFLFVECGSMNDAKKIIKSFHGKRLDL   81 (100)
T ss_dssp             SEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred             eEEEEEECCHHHHHHHHHHhCCcccCC
Confidence            389999999999999999999999986

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=85.66  E-value=0.71  Score=30.98  Aligned_cols=29  Identities=34%  Similarity=0.503  Sum_probs=26.0

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      =||.|+|.+.+.|.+..+.++|..+.+..
T Consensus        66 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~   94 (108)
T 2jvo_A           66 GFAFVEFEEAESAAKAIEEVHGKSFANQP   94 (108)
T ss_dssp             TEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred             CEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence            48999999999999999999999996643

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=85.29  E-value=0.48  Score=30.70  Aligned_cols=34  Identities=24%  Similarity=0.299  Sum_probs=28.6

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      -||.|+|.+.+.|.+..+.++|..+.+..  |-+++
T Consensus        38 g~afV~f~~~~~a~~A~~~l~g~~~~g~~--l~V~~   71 (101)
T 2hvz_A           38 GFAFVEFEDPRDAEDAVRGLDGKVICGSR--VRVEL   71 (101)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCSSSCC--CEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHCCCeECCcE--EEEEE
Confidence            48999999999999999999999987654  44444

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=85.27  E-value=0.64  Score=31.44  Aligned_cols=28  Identities=25%  Similarity=0.242  Sum_probs=25.6

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESS   72 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s   72 (130)
                      =||.|+|.+.+.|.+..+.++|..+.+.
T Consensus       106 g~afV~f~~~~~a~~A~~~l~g~~~~g~  133 (140)
T 2ku7_A          106 GFAFVEFELAEDAAAAIDNMNESELFGR  133 (140)
T ss_dssp             SEEEEEESCHHHHHHHHHHSTEEEETTE
T ss_pred             cEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence            4899999999999999999999998764

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=85.25  E-value=0.86  Score=30.66  Aligned_cols=28  Identities=25%  Similarity=0.503  Sum_probs=26.0

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+.-++++|..+.+..
T Consensus        47 ~afV~f~~~~~A~~Ai~~l~~~~~~g~~   74 (115)
T 4f25_A           47 YGFVHFETQEAAERAIEKMNGMLLNDRK   74 (115)
T ss_dssp             EEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred             eEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence            8999999999999999999999998754

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=85.05  E-value=0.85  Score=30.39  Aligned_cols=28  Identities=14%  Similarity=0.115  Sum_probs=25.9

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESS   72 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s   72 (130)
                      -||.|+|.+.+.|.+.-+.++|..+.+.
T Consensus        64 G~afV~f~~~~~A~~Ai~~lng~~~~gr   91 (111)
T 2cpi_A           64 ASAYVTYIRSEDALRAIQCVNNVVVDGR   91 (111)
T ss_dssp             EEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred             eEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence            4999999999999999999999998764

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=84.95  E-value=1.7  Score=29.00  Aligned_cols=41  Identities=20%  Similarity=0.283  Sum_probs=32.9

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccccCCCCCcC
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFD   88 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVPDd~~Fd   88 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+  ..|-+.|-..-..|.
T Consensus        66 ~afV~f~~~~~A~~Ai~~lng~~~~g--r~l~v~~a~~~~~~~  106 (112)
T 2dit_A           66 VASVSFRDPEEADYCIQTLDGRWFGG--RQITAQAWDGTTDYQ  106 (112)
T ss_dssp             EEEEECSCHHHHHHHHHHSTTCEETT--EECEEEECCSCCCSS
T ss_pred             EEEEEECCHHHHHHHHHHcCCCEECC--cEEEEEEeCCCCCcc
Confidence            79999999999999999999999875  556666654444443

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=84.88  E-value=0.57  Score=31.15  Aligned_cols=28  Identities=21%  Similarity=0.443  Sum_probs=25.7

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+..
T Consensus        84 ~afV~f~~~~~A~~A~~~l~g~~~~g~~  111 (118)
T 2khc_A           84 FGFVSFDNPDSAQVAIKAMNGFQVGTKR  111 (118)
T ss_dssp             EEEEEEESSHHHHHHHHHCCCCEETTEE
T ss_pred             EEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence            8999999999999999999999987643

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=84.84  E-value=0.61  Score=30.81  Aligned_cols=34  Identities=18%  Similarity=0.275  Sum_probs=28.7

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      =||.|+|.+.+.|.+..++++|..+.+.  .|-+++
T Consensus        63 g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~V~~   96 (110)
T 1wf1_A           63 GYAFVQYSNERHARAAVLGENGRVLAGQ--TLDINM   96 (110)
T ss_dssp             TEEEEECSSSHHHHHHHHHHTTCEETTE--ECCEEE
T ss_pred             CEEEEEECCHHHHHHHHHHcCCCEECCe--EEEEEE
Confidence            4899999999999999999999998764  455544

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=84.65  E-value=0.93  Score=29.24  Aligned_cols=33  Identities=27%  Similarity=0.483  Sum_probs=27.7

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+  ..|-+.|
T Consensus        51 ~afV~f~~~~~a~~Ai~~l~g~~~~g--~~l~v~~   83 (97)
T 1x5p_A           51 CAFVTYEKMESADQAVAELNGTQVES--VQLKVNI   83 (97)
T ss_dssp             EEEEEESSHHHHHHHHHHTTTEEETT--EEEEEEC
T ss_pred             EEEEEECCHHHHHHHHHHhCCCeECC--eEEEEEE
Confidence            79999999999999999999999865  3444444

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.45  E-value=2.3  Score=27.17  Aligned_cols=27  Identities=11%  Similarity=0.178  Sum_probs=25.1

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+.-+ ++|..+.+..
T Consensus        47 ~afV~f~~~~~a~~ai~-l~g~~~~g~~   73 (94)
T 2e5g_A           47 FAIVEMGDVGAREAVLS-QSQHSLGGHR   73 (94)
T ss_dssp             EEEEEESSHHHHHHHHT-CSCCEETTEE
T ss_pred             EEEEEECCHHHHHHHHh-cCCeEECCEE
Confidence            99999999999999999 9999998754

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=84.10  E-value=0.69  Score=30.83  Aligned_cols=29  Identities=17%  Similarity=0.338  Sum_probs=26.1

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      -||.|+|.+.+.|.+..+.++|..+.+..
T Consensus        70 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~   98 (109)
T 2err_A           70 GFGFVTFENSADADRAREKLHGTVVEGRK   98 (109)
T ss_dssp             TEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred             eEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence            38999999999999999999999987643

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=84.08  E-value=1.2  Score=29.08  Aligned_cols=27  Identities=7%  Similarity=0.128  Sum_probs=24.4

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+.. +++|..+.+..
T Consensus        63 ~afV~f~~~~~a~~Ai-~l~g~~~~g~~   89 (100)
T 2j76_E           63 FGYAEFEDLDSLLSAL-SLNEESLGNRR   89 (100)
T ss_dssp             CEEEEECCHHHHHHHH-HTTTCCBTTBC
T ss_pred             EEEEEECCHHHHHHHH-hcCCCEECCeE
Confidence            8999999999999999 99999987643

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.06  E-value=1  Score=28.57  Aligned_cols=26  Identities=19%  Similarity=0.381  Sum_probs=24.2

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESS   72 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s   72 (130)
                      ||.|+|.+.+.|.+..+ ++|..+.+-
T Consensus        52 ~afV~f~~~~~a~~A~~-~~g~~~~gr   77 (91)
T 2dgw_A           52 YIFVDFSNEEEVKQALK-CNREYMGGR   77 (91)
T ss_dssp             EEEEECSSHHHHHHHHH-SCSEEETTE
T ss_pred             EEEEEECCHHHHHHHHH-hCCceeCCc
Confidence            89999999999999999 999998764

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=83.84  E-value=0.99  Score=27.45  Aligned_cols=27  Identities=22%  Similarity=0.320  Sum_probs=23.9

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.|.+.|.+.-+ ++|..+.+..
T Consensus        43 ~afV~f~~~~~a~~a~~-~~~~~~~g~~   69 (75)
T 2mss_A           43 FGFVTFESEDIVEKVCE-IHFHEINNKM   69 (75)
T ss_dssp             EEEEECSCHHHHHHHHS-SSCCCSSSCC
T ss_pred             EEEEEECCHHHHHHHHH-CCCCEECCEE
Confidence            89999999999999987 9999887643

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=83.79  E-value=0.77  Score=28.73  Aligned_cols=27  Identities=19%  Similarity=0.300  Sum_probs=24.3

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+.. .++|..+.+..
T Consensus        50 ~afV~f~~~~~a~~a~-~~~g~~~~g~~   76 (89)
T 3ucg_A           50 FAYIEFSDKESVRTSL-ALDESLFRGRQ   76 (89)
T ss_dssp             EEEEEESSTHHHHHHG-GGTTCEETTEE
T ss_pred             EEEEEECCHHHHHHHH-hcCCCEECCcE
Confidence            8999999999999999 99999987643

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=83.76  E-value=0.94  Score=32.27  Aligned_cols=29  Identities=21%  Similarity=0.289  Sum_probs=26.2

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      =||.|+|.+.+.|.+..+.|+|..+.+..
T Consensus       115 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~  143 (165)
T 1rk8_A          115 GYALVEYETHKQALAAKEALNGAEIMGQT  143 (165)
T ss_dssp             EEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             eEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            38999999999999999999999997644

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=83.71  E-value=1.2  Score=30.36  Aligned_cols=35  Identities=14%  Similarity=0.215  Sum_probs=28.0

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccc-ccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYES-SATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~-s~~~lDLRF   80 (130)
                      ||.|+|.+.+.|.+.-+.++|..+.. ++..|-++|
T Consensus       138 ~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~  173 (175)
T 3nmr_A          138 CAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF  173 (175)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred             EEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence            79999999999999999999987764 344454443

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=83.46  E-value=1.1  Score=31.49  Aligned_cols=28  Identities=25%  Similarity=0.424  Sum_probs=25.8

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|....+.++|..+.+..
T Consensus        74 ~aFV~F~~~~~A~~Ai~~lng~~l~gr~  101 (127)
T 2a3j_A           74 KAYIVFATQESAQAFVEAFQGYPFQGNP  101 (127)
T ss_dssp             CEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred             EEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence            8999999999999999999999988753

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=83.42  E-value=1.2  Score=28.80  Aligned_cols=27  Identities=26%  Similarity=0.393  Sum_probs=24.3

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+..+ ++|..+.+..
T Consensus        60 ~afV~f~~~~~a~~A~~-l~g~~~~g~~   86 (101)
T 1fj7_A           60 FGYVDFESAEDLEKALE-LTGLKVFGNE   86 (101)
T ss_dssp             EEEEEESSHHHHHHHHH-GGGCCBTTBC
T ss_pred             EEEEEECCHHHHHHHHh-cCCcEECCcE
Confidence            89999999999999998 9999988643

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=82.77  E-value=1.2  Score=29.88  Aligned_cols=32  Identities=16%  Similarity=0.281  Sum_probs=26.6

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.+.+.|.+.. +++|..+.+..  |-+++
T Consensus        80 ~afV~f~~~~~a~~A~-~l~g~~~~g~~--l~V~~  111 (124)
T 2jwn_A           80 YAYIEFAERNSVDAAV-AMDETVFRGRT--IKVLP  111 (124)
T ss_dssp             EEEEEESSHHHHHHHH-TTTTCEETTEE--CEEEE
T ss_pred             EEEEEECCHHHHHHHH-hcCCCeECCeE--EEEEE
Confidence            8999999999999999 89999987643  44444

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=82.77  E-value=1.2  Score=33.23  Aligned_cols=33  Identities=9%  Similarity=0.041  Sum_probs=29.4

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVD   77 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lD   77 (130)
                      =||.|+|.+.+.|.+.-..|+|.++.+....-.
T Consensus       166 g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p  198 (205)
T 3tyt_A          166 SSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP  198 (205)
T ss_dssp             EEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred             eEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence            499999999999999999999999998875543

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=82.72  E-value=1.2  Score=30.14  Aligned_cols=36  Identities=22%  Similarity=0.253  Sum_probs=29.9

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccccC
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVP   82 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVP   82 (130)
                      =||-|+|.+.+.|.+..++++|..|.+  ..+-..|.+
T Consensus        57 G~~FV~f~~~~~A~~Ai~~lnG~~~~G--r~i~v~~a~   92 (105)
T 2pe8_A           57 VRIFLEFERVESAIKAVVDLNGRYFGG--RVVKACFYN   92 (105)
T ss_dssp             EEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEECC
T ss_pred             EEEEEEECCHHHHHHHHHHHCCCEECC--cEEEEEEcC
Confidence            489999999999999999999999976  445555544

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.34  E-value=1.6  Score=28.03  Aligned_cols=28  Identities=7%  Similarity=0.184  Sum_probs=24.7

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      =||.|+|.+.+.|.+..+ ++|..+.+..
T Consensus        53 g~afV~f~~~~~a~~A~~-~~~~~~~g~~   80 (99)
T 2dgs_A           53 GFGFITFEDEQSVDQAVN-MHFHDIMGKK   80 (99)
T ss_dssp             SEEEEEESSHHHHHHHHH-HCCCBSSSCB
T ss_pred             ceEEEEECCHHHHHHHHH-hCCCEECCeE
Confidence            389999999999999998 9999887643

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=82.30  E-value=1.4  Score=28.76  Aligned_cols=28  Identities=21%  Similarity=0.380  Sum_probs=25.5

Q ss_pred             eEEEEeCCHHHHHHHHHhcC------Cccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECD------GMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~d------G~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+..+.++      |..+.+..
T Consensus        59 ~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~   92 (111)
T 1x4h_A           59 CAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ   92 (111)
T ss_dssp             EEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred             EEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence            89999999999999999999      99887643

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=82.25  E-value=0.73  Score=30.42  Aligned_cols=28  Identities=18%  Similarity=0.318  Sum_probs=25.8

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESS   72 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s   72 (130)
                      =||.|+|.+.+.|.+.-+.++|..+.+.
T Consensus        62 G~afV~f~~~~~A~~Ai~~l~g~~~~g~   89 (105)
T 2nlw_A           62 GYIFLEYASPAHAVDAVKNADGYKLDKQ   89 (105)
T ss_dssp             CEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred             eEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence            3899999999999999999999999864

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=82.02  E-value=1.2  Score=28.90  Aligned_cols=27  Identities=22%  Similarity=0.391  Sum_probs=24.4

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+.. +++|..+.+..
T Consensus        58 ~afV~f~~~~~a~~A~-~l~g~~~~g~~   84 (103)
T 2dng_A           58 FCYVEFDEVDSLKEAL-TYDGALLGDRS   84 (103)
T ss_dssp             EEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred             EEEEEECCHHHHHHHH-hhCCCeECCeE
Confidence            8999999999999999 99999987643

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=82.02  E-value=1.4  Score=29.85  Aligned_cols=37  Identities=16%  Similarity=0.165  Sum_probs=30.7

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccccCC
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPD   83 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVPD   83 (130)
                      =||-|+|.+.+.|.+..++++|..|.+  ..+-..|.|.
T Consensus        60 G~~fV~f~~~~~A~~Ai~~lnG~~f~G--R~i~v~~~~~   96 (105)
T 3v4m_A           60 GKIFVEFTSVFDCQKAMQGLTGRKFAN--RVVVTKYCDP   96 (105)
T ss_dssp             TEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEEECH
T ss_pred             EEEEEEECCHHHHHHHHHHhCCCEeCC--CEEEEEEeCH
Confidence            489999999999999999999999976  4465666543

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=81.52  E-value=1.8  Score=30.80  Aligned_cols=34  Identities=9%  Similarity=0.204  Sum_probs=28.4

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      -||.|+|.+.+.|.+..+.++|..+.+..  |-++|
T Consensus       168 g~afV~F~~~~~A~~A~~~l~g~~~~g~~--i~V~~  201 (216)
T 2qfj_A          168 GYGFIEYEKAQSSQDAVSSMNLFDLGGQY--LRVGK  201 (216)
T ss_dssp             EEEEEEESSHHHHHHHHHHHTTCBCSSSB--CEEEE
T ss_pred             ceEEEEecCHHHHHHHHHHccCCEeCCcE--EEEEE
Confidence            38999999999999999999999987644  44443

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=81.37  E-value=1.5  Score=31.62  Aligned_cols=28  Identities=29%  Similarity=0.309  Sum_probs=25.8

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+.-+.++|.++.+-.
T Consensus       101 faFV~f~~~~~A~~Ai~~lng~~~~Gr~  128 (156)
T 3n9u_C          101 YAEVVVASENSVHKLLELLPGKVLNGEK  128 (156)
T ss_dssp             EEEEEESCHHHHHHHHHHSTTCEETTEE
T ss_pred             EEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence            8999999999999999999999988743

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=81.36  E-value=1.2  Score=28.95  Aligned_cols=27  Identities=7%  Similarity=0.132  Sum_probs=24.4

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+.. +++|..+.+..
T Consensus        59 ~afV~f~~~~~a~~A~-~l~g~~~~g~~   85 (104)
T 1wi8_A           59 FGYAEFEDLDSLLSAL-SLNEESLGNKR   85 (104)
T ss_dssp             CEEEEESSHHHHHHHH-GGGTCEETTEE
T ss_pred             EEEEEECCHHHHHHHH-hcCCCEeCCcE
Confidence            8999999999999999 99999987643

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=81.08  E-value=1.3  Score=30.50  Aligned_cols=28  Identities=18%  Similarity=0.220  Sum_probs=25.8

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+..
T Consensus        94 ~afV~f~~~~~A~~Ai~~lng~~~~g~~  121 (143)
T 3egn_A           94 QAFIGLPNEKAAAKALKEANGYVLFGKP  121 (143)
T ss_dssp             EEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred             EEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence            9999999999999999999999997644

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=80.67  E-value=1.2  Score=32.57  Aligned_cols=44  Identities=14%  Similarity=0.335  Sum_probs=33.7

Q ss_pred             hhcHHHHHHHHHhh-------hc-------eeeEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101          28 AYHREKLRQYQLNR-------LK-------YYYAVVVFDSAESANKVYTECDGMEYES   71 (130)
Q Consensus        28 ~~~~e~lR~Yq~~r-------lr-------YyyAVvecds~~tA~~iY~e~dG~E~e~   71 (130)
                      -++...+|..-...       ++       +==|||||.++++|-+.-=++||.+|.+
T Consensus        32 tvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~g   89 (117)
T 2l9w_A           32 KVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQG   89 (117)
T ss_dssp             TCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETT
T ss_pred             CCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecC
Confidence            34556677665554       22       3349999999999999999999999985

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=80.66  E-value=1.7  Score=30.13  Aligned_cols=29  Identities=24%  Similarity=0.305  Sum_probs=25.9

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      =||.|+|.+.+.|.+..+.++|..+.+..
T Consensus       111 g~afV~f~~~~~a~~A~~~l~g~~~~g~~  139 (150)
T 2i2y_A          111 GFAFVEFEDPRDAADAVRELDGRTLCGCR  139 (150)
T ss_dssp             SEEEEEESSHHHHHHHHHHHSSSCSSSSC
T ss_pred             cEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence            49999999999999999999999987643

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=80.57  E-value=1.5  Score=32.18  Aligned_cols=34  Identities=24%  Similarity=0.342  Sum_probs=28.5

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      -||.|+|.+.+.|.+..++++|..+.+..  |-+.+
T Consensus       144 g~~fV~f~~~~~a~~Ai~~lng~~~~g~~--i~V~~  177 (213)
T 4f02_A          144 GYGFVHFETQEAAERAIEKMNGMLLNDRK--VFVGR  177 (213)
T ss_dssp             EEEEEEESSHHHHHHHHHHHTTCEETTEE--CEEEE
T ss_pred             eEEEEEeCCHHHHHHHHHHhCCCEECCEE--EEEEE
Confidence            48999999999999999999999997744  44443

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=80.46  E-value=1.7  Score=29.39  Aligned_cols=36  Identities=14%  Similarity=0.361  Sum_probs=29.5

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccccC
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVP   82 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVP   82 (130)
                      =||.|+|.+.+.|.+..+.++|..+.+.  .+-+++..
T Consensus        45 g~afV~f~~~~~A~~a~~~l~~~~~~g~--~l~v~~~~   80 (167)
T 1fxl_A           45 GYGFVNYIDPKDAEKAINTLNGLRLQTK--TIKVSYAR   80 (167)
T ss_dssp             EEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEECC
T ss_pred             eEEEEEECCHHHHHHHHHHcCCCccCCc--eEEEEecC
Confidence            3899999999999999999999999764  45555543

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=80.46  E-value=1  Score=30.91  Aligned_cols=29  Identities=14%  Similarity=0.259  Sum_probs=26.0

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      -||.|+|.+.+.|.+..+.++|..+.+..
T Consensus       137 g~afV~f~~~~~A~~A~~~l~g~~~~g~~  165 (172)
T 2g4b_A          137 GYAFCEYVDINVTDQAIAGLNGMQLGDKK  165 (172)
T ss_dssp             EEEEEEESSTTHHHHHHHHHTTCEETTEE
T ss_pred             eEEEEEeCCHHHHHHHHHHcCCCEECCeE
Confidence            37999999999999999999999987643

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=80.30  E-value=1.9  Score=28.05  Aligned_cols=34  Identities=12%  Similarity=0.236  Sum_probs=27.7

Q ss_pred             eEEEEeCCHHHHHHHHHhcC--Cccccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECD--GMEYESSATRVDLRFV   81 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~d--G~E~e~s~~~lDLRFV   81 (130)
                      ||.|+|.+.+.|.+..+.++  |..+.+.  .|-+.|-
T Consensus        54 ~afV~f~~~~~A~~A~~~l~~g~~~~~g~--~l~V~~a   89 (109)
T 2dis_A           54 FAFVEYESHRAAAMARRKLMPGRIQLWGH--QIAVDWA   89 (109)
T ss_dssp             EEEEEESSHHHHHHHHTTTTTCCSCBTTB--CCEEEES
T ss_pred             EEEEEecCHHHHHHHHHHhhCCCceecCC--eEEEEEc
Confidence            89999999999999999996  5888764  4555544

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=80.05  E-value=1.6  Score=30.27  Aligned_cols=33  Identities=18%  Similarity=0.391  Sum_probs=28.0

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+.  .|-++|
T Consensus       114 ~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~  146 (158)
T 2kn4_A          114 FAFVRFHDKRDAEDAMDAMDGAVLDGR--ELRVQM  146 (158)
T ss_dssp             EEEEEESBHHHHHHHHHHSTTEESSSS--EEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEECCe--EEEEEE
Confidence            899999999999999999999998763  454444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	130
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	94.2
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	93.92
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	93.36
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	92.45
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	92.12
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	91.87
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	91.52
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	91.52
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	91.35
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	91.31
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	90.9
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	90.87
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	90.62
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	90.47
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	90.44
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	90.26
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	90.23
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	90.03
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	89.87
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	89.69
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	89.55
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	89.53
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	89.33
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	89.08
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	89.08
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	88.92
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	88.81
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	88.76
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	88.74
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	88.68
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	88.67
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	88.61
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	88.49
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	88.31
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	88.08
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	87.9
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	87.8
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	87.74
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	87.43
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	87.1
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	86.7
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	86.67
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	86.65
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	86.53
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	85.97
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	85.77
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	85.56
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	85.52
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	85.49
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	85.3
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	85.22
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	84.99
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	84.17
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	84.09
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	82.64
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	82.39
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	81.31

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.20  E-value=0.025  Score=35.28  Aligned_cols=35  Identities=17%  Similarity=0.296  Sum_probs=30.3

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.|.+.|....+.++|..+.+....|-++|
T Consensus        50 ~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~V~~   84 (85)
T d1b7fa2          50 VAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL   84 (85)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             eEEEEECCHHHHHHHHHHHCCCEeCCCCeEEEEEE
Confidence            79999999999999999999999988766555543

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.92  E-value=0.033  Score=34.36  Aligned_cols=38  Identities=16%  Similarity=0.241  Sum_probs=33.6

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccccCCCC
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDT   85 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVPDd~   85 (130)
                      ||.|++.+.+.|.+..+.++|.++.+  ..|-.+|.|.|.
T Consensus        35 ~afv~f~~~~~A~~Ai~~ln~~~~~g--~~l~V~~a~~d~   72 (75)
T d1wi6a1          35 TAFVTLLNGEQAEAAINTFHQSRLRE--RELSVQLQPTDA   72 (75)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTEESSS--CEEEEEECCSTT
T ss_pred             eEEEEECCHHHHHHHHHHhCCccCCC--CEEEEEEeCCCC
Confidence            79999999999999999999999987  457788877664

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.36  E-value=0.055  Score=34.56  Aligned_cols=38  Identities=16%  Similarity=0.378  Sum_probs=32.7

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccccC
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVP   82 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVP   82 (130)
                      -||.|+|.+.+.|.+..+.++|.++.+....|-+.|-.
T Consensus        54 ~~afV~f~~~~~A~~A~~~l~~~~i~g~~~~l~v~~ak   91 (97)
T d1whya_          54 SFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK   91 (97)
T ss_dssp             CCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred             cEEEeccCCHHHHHHHHHHhCCCEeCCCceEEEEEeCC
Confidence            48999999999999999999999998877666666643

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.45  E-value=0.081  Score=33.32  Aligned_cols=38  Identities=16%  Similarity=0.243  Sum_probs=32.7

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccccCCCC
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDT   85 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVPDd~   85 (130)
                      ||.|+|.+.+.|.+..++++|.++.+  ..|-++|-|.+.
T Consensus        42 ~afV~f~~~~~A~~Ai~~ln~~~~~G--~~l~V~~a~~~~   79 (88)
T d1wg1a_          42 TAFVTLLNGEQAQNAIQMFHQYSFRG--KDLIVQLQPTDA   79 (88)
T ss_dssp             EEEECCSCHHHHHHHHHHHTTEEETT--EEEEEEECCCCC
T ss_pred             ceEEEECCHHHHHHHHHHhCCCEECC--EEEEEEEcCCCC
Confidence            79999999999999999999999976  557777766654

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.12  E-value=0.081  Score=32.95  Aligned_cols=34  Identities=12%  Similarity=0.255  Sum_probs=29.3

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLR   79 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLR   79 (130)
                      ||.|+|.+.+.|....+.++|..+.+....+-.+
T Consensus        50 ~afV~f~~~~~a~~Ai~~lng~~~~G~~~~i~V~   83 (85)
T d1fxla2          50 VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK   83 (85)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred             eeEEEEcCHHHHHHHHHHhCCCEeCCCCEEEEEE
Confidence            8999999999999999999999998866544443

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.87  E-value=0.1  Score=32.57  Aligned_cols=34  Identities=18%  Similarity=0.259  Sum_probs=29.2

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV   81 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV   81 (130)
                      ||.|+|.+.+.|.+..+.++|.+|.+..  +-+.++
T Consensus        37 ~afV~f~~~~~a~~Ai~~l~g~~~~g~~--i~v~~~   70 (87)
T d3begb1          37 TGVVEFVRKEDMTYAVRKLDNTKFRSHE--GETAYI   70 (87)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTCBCCCTT--SCCCBC
T ss_pred             eeeEEeCCHHHHHHHHHHhCCCEECCcE--eEEeEE
Confidence            8999999999999999999999998755  444454

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.52  E-value=0.041  Score=33.02  Aligned_cols=29  Identities=28%  Similarity=0.308  Sum_probs=26.5

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      -||.|+|.|.+.|.+..+.++|.++.+..
T Consensus        41 g~afV~f~~~~~A~~Ai~~lng~~~~Gr~   69 (72)
T d1x4ea1          41 GYGFVDFDSPSAAQKAVTALKASGVQAQM   69 (72)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHHHTCCEES
T ss_pred             ceeEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            38999999999999999999999998754

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.52  E-value=0.071  Score=34.57  Aligned_cols=37  Identities=16%  Similarity=0.294  Sum_probs=32.7

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV   81 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV   81 (130)
                      -||.|+|.+.+.|.+.-++++|.++...+..+.+.|=
T Consensus        46 g~aFV~f~~~e~A~~Ai~~ln~~~l~~~~~~l~v~~s   82 (108)
T d2adba1          46 FQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS   82 (108)
T ss_dssp             EEEEEEESCHHHHHHHHHHHHSCCSSTTCCCCEEEEC
T ss_pred             CeEEEEECCHHHHHHHHHHHCCCEeccCCcEEEEEec
Confidence            5799999999999999999999999877777777663

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.35  E-value=0.087  Score=32.06  Aligned_cols=28  Identities=18%  Similarity=0.407  Sum_probs=25.6

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+..++++|..+.+..
T Consensus        46 ~afv~f~~~~~a~~a~~~l~g~~~~g~~   73 (82)
T d1fxla1          46 YGFVNYIDPKDAEKAINTLNGLRLQTKT   73 (82)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             eEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            6999999999999999999999997743

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.31  E-value=0.087  Score=32.98  Aligned_cols=31  Identities=23%  Similarity=0.359  Sum_probs=27.1

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRV   76 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~l   76 (130)
                      ||.|+|.|.+.|.+..+.++|..+.+....+
T Consensus        51 ~afV~f~~~~~A~~A~~~lng~~l~g~~l~V   81 (88)
T d1rk8a_          51 YALVEYETHKQALAAKEALNGAEIMGQTIQV   81 (88)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred             ceeEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence            7999999999999999999999998754333

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.90  E-value=0.096  Score=31.95  Aligned_cols=29  Identities=21%  Similarity=0.291  Sum_probs=26.4

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSAT   74 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~   74 (130)
                      ||.|+|.|.+.|.+..+.++|..+.+..-
T Consensus        45 ~afV~f~~~e~A~~Ai~~l~g~~~~g~~i   73 (81)
T d2ghpa1          45 FAYIDVTSKEDARYCVEKLNGLKIEGYTL   73 (81)
T ss_dssp             EEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred             eeEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence            79999999999999999999999987543

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.87  E-value=0.096  Score=33.74  Aligned_cols=34  Identities=18%  Similarity=0.230  Sum_probs=29.3

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDL   78 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDL   78 (130)
                      =||.|+|.+.+.|.+..+.++|.++.+....+++
T Consensus        51 g~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~   84 (98)
T d1wf2a_          51 GFAFVQYVNERNARAAVAGEDGRMIAGQVLDINL   84 (98)
T ss_dssp             EEEEEEESSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred             CeEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence            4899999999999999999999999886544444

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.62  E-value=0.11  Score=33.40  Aligned_cols=35  Identities=11%  Similarity=0.199  Sum_probs=30.7

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV   81 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV   81 (130)
                      -||.|+|.+.+.|.+..++++|.+|.+..  +..+|+
T Consensus        51 g~afV~f~~~~~a~~Ai~~lng~~~~g~~--i~v~~~   85 (98)
T d1wg4a_          51 GMGMVEYLRKEDMEYALRKLDDTKFRSHE--GETSYI   85 (98)
T ss_dssp             TEEEEEESSHHHHHHHHHHHSSEEEECTT--SCEEEE
T ss_pred             ceEEEEECCHHHHHHHHHHhCCCEeCCeE--EEEEEE
Confidence            48999999999999999999999998855  666666

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.47  E-value=0.12  Score=31.59  Aligned_cols=33  Identities=18%  Similarity=0.349  Sum_probs=28.5

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.+.+.|....+.++|..+.+.  .|-+++
T Consensus        43 ~afV~f~~~~~A~~Ai~~l~g~~l~g~--~l~V~~   75 (78)
T d1no8a_          43 TADVHFERKADALKAMKQYNGVPLDGR--PMNIQL   75 (78)
T ss_dssp             EEEEEESCHHHHHHHHHHHTTCEETTE--ECEEEE
T ss_pred             eEEEEECCHHHHHHHHHHhCCCEECCE--EEEEEE
Confidence            899999999999999999999999874  455444

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.44  E-value=0.12  Score=31.64  Aligned_cols=27  Identities=26%  Similarity=0.576  Sum_probs=25.2

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESS   72 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s   72 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+.
T Consensus        53 ~afV~f~~~~~A~~Ai~~l~g~~~~gr   79 (83)
T d2cqca1          53 FAFVYFENVDDAKEAKERANGMELDGR   79 (83)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred             ceEEEECCHHHHHHHHHHcCCCEECCE
Confidence            899999999999999999999998763

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.26  E-value=0.15  Score=31.24  Aligned_cols=29  Identities=31%  Similarity=0.441  Sum_probs=26.6

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSAT   74 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~   74 (130)
                      ||.|+|.+.+.|.+..++++|..+.+...
T Consensus        41 ~afV~f~~~~~A~~Ai~~lng~~~~g~~l   69 (79)
T d2bz2a1          41 CAFVTYEKMESADQAVAELNGTQVESVQL   69 (79)
T ss_dssp             EEEEECSSHHHHHHHHHHHTTCBCSSCBC
T ss_pred             EEEEEEcccHHHHHHHHHhCCCEECCEEE
Confidence            89999999999999999999999987543

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.23  E-value=0.14  Score=31.51  Aligned_cols=34  Identities=18%  Similarity=0.318  Sum_probs=27.6

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.|.+.|....+.++|..+..+ ..|-++|
T Consensus        47 ~afV~f~~~~~A~~A~~~l~g~~~~~~-~~i~v~~   80 (83)
T d2b0ga1          47 IAFVEFTTELQSNAAKEALQGFKITPT-HAMKITF   80 (83)
T ss_dssp             CEEEEESSHHHHHHHHHHHTTCBSSTT-CBCEEEE
T ss_pred             eEEEecCCHHHHHHHHHHhCCcEeCCC-cEEEEEE
Confidence            899999999999999999999998643 2344443

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.03  E-value=0.13  Score=32.91  Aligned_cols=27  Identities=15%  Similarity=0.151  Sum_probs=25.1

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYES   71 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~   71 (130)
                      -||.|++.+.+.|.+..+.++|..+.+
T Consensus        60 g~afV~f~~~~~A~~Ai~~lng~~i~g   86 (101)
T d1x5oa1          60 GVGFARMESTEKCEAVIGHFNGKFIKT   86 (101)
T ss_dssp             EEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred             cceeEEeCCHHHHHHHHHHhCCCEECC
Confidence            499999999999999999999998875

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.87  E-value=0.14  Score=32.21  Aligned_cols=29  Identities=21%  Similarity=0.298  Sum_probs=26.2

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      .||.|+|.|.+.|.+..+.++|..+.+--
T Consensus        59 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~   87 (101)
T d2cpea1          59 GDATVSYEDPPTAKAAVEWFDGKDFQGSK   87 (101)
T ss_dssp             SEEEEEBSSHHHHHHHHHHHTTCEETTEE
T ss_pred             ceeeEEecCHHHHHHHHHHhCCCEECCEE
Confidence            58999999999999999999999987643

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.69  E-value=0.15  Score=31.62  Aligned_cols=33  Identities=12%  Similarity=0.373  Sum_probs=27.7

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.|.+.|....+.++|..+.+-  .|-+++
T Consensus        49 ~afV~f~~~~~a~~Ai~~l~~~~~~g~--~l~V~~   81 (90)
T d1x5sa1          49 FGFVTFENIDDAKDAMMAMNGKSVDGR--QIRVDQ   81 (90)
T ss_dssp             EEEEECSSHHHHHHHHHHHTTCCTTSC--CCEEEE
T ss_pred             eEEEEECCHHHHHHHHHHcCCCEECCE--EEEEEE
Confidence            799999999999999999999998764  444444

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.55  E-value=0.19  Score=30.68  Aligned_cols=28  Identities=18%  Similarity=0.311  Sum_probs=25.9

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.|.+.|.+..++++|..+.+..
T Consensus        43 ~afV~f~~~~~a~~Ai~~~~g~~~~gr~   70 (83)
T d1x5ta1          43 YAFINFASFDASDAAIEAMNGQYLCNRP   70 (83)
T ss_dssp             EEEEEBSSHHHHHHHHHTTTTCEETTEE
T ss_pred             eEEEEECCHHHHHHHHHhCCCcEECCEE
Confidence            7999999999999999999999998754

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=89.53  E-value=0.16  Score=30.87  Aligned_cols=28  Identities=21%  Similarity=0.358  Sum_probs=25.5

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.|.+.|.+..+.++|..+.+..
T Consensus        46 ~afV~f~~~~~A~~ai~~lng~~~~g~~   73 (82)
T d1b7fa1          46 YAFVDFTSEMDSQRAIKVLNGITVRNKR   73 (82)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             cceEEECCHHHHHHHHHHhCCCEECCEE
Confidence            7999999999999999999999987643

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.33  E-value=0.16  Score=32.98  Aligned_cols=37  Identities=22%  Similarity=0.439  Sum_probs=29.5

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccc-ccc--cccccccC
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYES-SAT--RVDLRFVP   82 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~-s~~--~lDLRFVP   82 (130)
                      ||.|+|.|.+.|.+..++++|.++.. ...  .+-+.||.
T Consensus        58 ~aFV~f~~~e~A~~A~~~lng~~i~~~~~~~i~~~~~~~~   97 (101)
T d2cq2a1          58 YSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE   97 (101)
T ss_dssp             CEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEES
T ss_pred             EEEEEECCHHHHHHHHHHhCCCCCCCCCCcEEEEEEEeee
Confidence            89999999999999999999999833 222  45556664

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.08  E-value=0.2  Score=30.98  Aligned_cols=25  Identities=16%  Similarity=0.231  Sum_probs=23.8

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYE   70 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e   70 (130)
                      ||.|+|.+.+.|.+...+|+|..+.
T Consensus        50 ~afV~f~~~~~A~~A~~~l~~~~i~   74 (88)
T d2adca2          50 MALIQMGSVEEAVQALIDLHNHDLG   74 (88)
T ss_dssp             CEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred             eeEEEECCHHHHHHHHHhccCCEec
Confidence            7999999999999999999999884

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.08  E-value=0.17  Score=30.94  Aligned_cols=28  Identities=18%  Similarity=0.161  Sum_probs=25.8

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESS   72 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s   72 (130)
                      =||.|+|.|.+.|....++++|..+.+-
T Consensus        43 g~aFV~f~~~~~a~~ai~~l~g~~~~gr   70 (80)
T d1cvja1          43 GYAYVNFQQPADAERALDTMNFDVIKGK   70 (80)
T ss_dssp             EEEEEEESSHHHHHHHHTTSTTCEETTE
T ss_pred             CceEEEECCHHHHHHHHHHcCCCEECCE
Confidence            3899999999999999999999999874

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.92  E-value=0.2  Score=32.70  Aligned_cols=36  Identities=17%  Similarity=0.237  Sum_probs=30.0

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccccC
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVP   82 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVP   82 (130)
                      -||-|+|.+.+.|.+..++++|..|.+  ..|-..|-|
T Consensus        69 G~~fV~f~~~~~A~~Ai~~lng~~~~g--r~i~v~~sP  104 (104)
T d1jmta_          69 GNVYVKFRREEDAEKAVIDLNNRWFNG--QPIHAELSP  104 (104)
T ss_dssp             EEEEEEESCHHHHHHHHHHHTTCEETT--EECCEEECC
T ss_pred             eEEEEEEechhHHHHHHHHHCCCEECC--EEEEEEECC
Confidence            579999999999999999999999976  445555544

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.81  E-value=0.21  Score=30.55  Aligned_cols=28  Identities=18%  Similarity=0.373  Sum_probs=25.7

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.|.+.|....+.++|..+.+..
T Consensus        45 ~afV~f~~~~~A~~A~~~~~~~~~~g~~   72 (85)
T d2cpfa1          45 FGFVEYKKPEQAQKALKQLQGHTVDGHK   72 (85)
T ss_dssp             EEEEEESSHHHHHHHHHHSTTCEETTEE
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            7999999999999999999999987643

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=88.76  E-value=0.14  Score=32.39  Aligned_cols=30  Identities=27%  Similarity=0.275  Sum_probs=26.9

Q ss_pred             eeeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          44 YYYAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        44 YyyAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      -.||.|+|.+.+.|.+..+.++|..+.+-.
T Consensus        53 ~~~afV~f~~~~~A~~A~~~l~~~~~~gr~   82 (96)
T d1fjca_          53 KGIAYIEFKSEADAEKNLEEKQGAEIDGRS   82 (96)
T ss_dssp             EEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred             ccEEEEEeCCHHHHHHHHHHcCCCEECCEE
Confidence            369999999999999999999999997743

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.74  E-value=0.23  Score=31.63  Aligned_cols=28  Identities=21%  Similarity=0.419  Sum_probs=25.8

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.|.+.|....+.++|..+.+..
T Consensus        52 ~afV~f~~~~~a~~ai~~l~~~~~~g~~   79 (104)
T d1p1ta_          52 YGFCEYQDQETALSAMRNLNGREFSGRA   79 (104)
T ss_dssp             EEEEECSCHHHHHHHHHHSSSBSCSSSC
T ss_pred             ceEEEECCHHHHHHHHHHcCCCEECCEE
Confidence            7999999999999999999999987644

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.68  E-value=0.18  Score=31.82  Aligned_cols=34  Identities=24%  Similarity=0.473  Sum_probs=28.7

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      -||.|+|.+.+.|....+.++|.++.+..  |.++|
T Consensus        54 g~afV~f~~~e~a~~Ai~~l~g~~~~g~~--l~V~~   87 (95)
T d1x4aa1          54 PFAFVEFEDPRDAEDAVYGRDGYDYDGYR--LRVEF   87 (95)
T ss_dssp             CCEEEEESCHHHHHHHHHHHTTCEETTEE--CEEEC
T ss_pred             ceEEEEECCHHHHHHHHHHhCCCEECCEE--EEEEe
Confidence            47999999999999999999999997644  55544

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.67  E-value=0.17  Score=31.61  Aligned_cols=31  Identities=19%  Similarity=0.295  Sum_probs=27.3

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRV   76 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~l   76 (130)
                      ||.|+|.+.+.|....+.++|..+.+..-.+
T Consensus        50 ~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v   80 (90)
T d2cqia1          50 YCFVEFYEHRDAAAALAAMNGRKILGKEVKV   80 (90)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred             eeEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence            7999999999999999999999998754333

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.61  E-value=0.2  Score=31.58  Aligned_cols=28  Identities=14%  Similarity=0.268  Sum_probs=25.9

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|....+.++|..+.+..
T Consensus        51 ~afV~f~~~~~A~~Ai~~l~g~~~~gr~   78 (93)
T d1h2vz_          51 FCFVEYYSRADAENAMRYINGTRLDDRI   78 (93)
T ss_dssp             EEEEEESSHHHHHHHHHHTTTSEETTEE
T ss_pred             eEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            7999999999999999999999997643

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.49  E-value=0.097  Score=32.75  Aligned_cols=29  Identities=24%  Similarity=0.440  Sum_probs=26.1

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      =||.|+|.+.+.|.+..++++|..+.+..
T Consensus        49 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~   77 (89)
T d1cvja2          49 GYGFVHFETQEAAERAIEKMNGMLLNDRK   77 (89)
T ss_dssp             SCEEEEESCHHHHHHHTTSSSEEEETTEE
T ss_pred             ceeEEEECCHHHHHHHHHHcCCCEECCEE
Confidence            38999999999999999999999997743

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.31  E-value=0.22  Score=31.26  Aligned_cols=28  Identities=18%  Similarity=0.398  Sum_probs=25.8

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+..+.++|.++.+.-
T Consensus        53 ~afV~f~~~~~a~~Ai~~l~~~~~~g~~   80 (93)
T d2cq3a1          53 FGFVTFENSADADRAREKLHGTVVEGRK   80 (93)
T ss_dssp             EEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred             eeEEEECCHHHHHHHHHHcCCCEECCEE
Confidence            7999999999999999999999998743

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.08  E-value=0.26  Score=31.26  Aligned_cols=33  Identities=12%  Similarity=0.271  Sum_probs=29.0

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.+++.|.+.-+.++|..+.+..  |-+.|
T Consensus        42 ~afV~f~~~~~A~~ai~~lng~~l~g~~--l~v~~   74 (109)
T d2adca1          42 NALVQMADGNQAQLAMSHLNGHKLHGKP--IRITL   74 (109)
T ss_dssp             CEEEEESCHHHHHHHHHHHTTCBCSSSB--CEEEC
T ss_pred             eEEEEECCHHHHHHHHHHhCCCEECCEE--EEEEE
Confidence            8999999999999999999999999754  55555

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.90  E-value=0.25  Score=31.18  Aligned_cols=28  Identities=36%  Similarity=0.549  Sum_probs=25.7

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|....+.++|..+.+..
T Consensus        52 ~afV~f~~~~~a~~A~~~l~g~~~~gr~   79 (99)
T d1whwa_          52 FAFVTFMFPEHAVKAYAEVDGQVFQGRM   79 (99)
T ss_dssp             EEEEEESSHHHHHHHHHHTTTEESSSCE
T ss_pred             ceEEEECCHHHHHHHHHHcCCCEECCEE
Confidence            7999999999999999999999987743

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.80  E-value=0.29  Score=30.75  Aligned_cols=34  Identities=18%  Similarity=0.199  Sum_probs=28.4

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      .||.|+|.+.+.|....+.++|..+.+  ..|-++|
T Consensus        61 g~~fV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~   94 (102)
T d2cpxa1          61 GQAFITFPNKEIAWQALHLVNGYKLYG--KILVIEF   94 (102)
T ss_dssp             SEEEEECSSHHHHHHHHHHSTTCBCSS--CBCEEEE
T ss_pred             ccceEEeccHHHHHHHHHHhCCCEECC--EEEEEEe
Confidence            589999999999999999999999876  4444444

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.74  E-value=0.2  Score=31.25  Aligned_cols=33  Identities=18%  Similarity=0.366  Sum_probs=28.2

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|++.+.|.+..+.++|..+.+..  |-++|
T Consensus        46 ~afV~f~~~~~A~~A~~~l~g~~i~g~~--l~V~~   78 (86)
T d2cpja1          46 FGFIRLETRTLAEIAKVELDNMPLRGKQ--LRVRF   78 (86)
T ss_dssp             EEEEECSSSHHHHHHHHHHTTCCBTTBC--CEEEE
T ss_pred             eEEEEECCHHHHHHHHHHhCCCEECCEE--EEEEE
Confidence            8999999999999999999999998754  44444

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.43  E-value=0.28  Score=30.71  Aligned_cols=28  Identities=14%  Similarity=0.095  Sum_probs=26.0

Q ss_pred             eeeEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101          44 YYYAVVVFDSAESANKVYTECDGMEYES   71 (130)
Q Consensus        44 YyyAVvecds~~tA~~iY~e~dG~E~e~   71 (130)
                      -.||-|+|.+.+.|.+-.+++||..+.+
T Consensus        56 ~g~aFV~f~~~~~A~~Ai~~lng~~~~g   83 (89)
T d2cpia1          56 SASAYVTYIRSEDALRAIQCVNNVVVDG   83 (89)
T ss_dssp             CEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred             ceEEEEecccchhHHHHHHHhCCCEECC
Confidence            4789999999999999999999999876

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.10  E-value=0.29  Score=30.47  Aligned_cols=28  Identities=21%  Similarity=0.474  Sum_probs=25.8

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+..+.++|..+.+..
T Consensus        52 ~afV~f~~~~~A~~Ai~~l~g~~~~g~~   79 (90)
T d2cq0a1          52 FAFISFHRREDAARAIAGVSGFGYDHLI   79 (90)
T ss_dssp             EEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred             ceeEEECCHHHHHHHHHHhCCCEECCEE
Confidence            7999999999999999999999987754

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.70  E-value=0.28  Score=30.15  Aligned_cols=33  Identities=24%  Similarity=0.445  Sum_probs=28.6

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.+.+.|....++++|..+.+..  |-++|
T Consensus        46 ~afV~f~~~~~A~~Ai~~l~~~~i~g~~--i~V~~   78 (86)
T d2cpda1          46 YAFVHFSNREDAVEAMKALNGKVLDGSP--IEVTL   78 (86)
T ss_dssp             EEEEEESSHHHHHHHHHHHSSEEETTEE--EEEEC
T ss_pred             EEEEEeCCHHHHHHHHHHcCCCEECCEE--EEEEe
Confidence            7999999999999999999999998754  54444

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.67  E-value=0.34  Score=28.64  Aligned_cols=28  Identities=21%  Similarity=0.248  Sum_probs=24.2

Q ss_pred             eeeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101          44 YYYAVVVFDSAESANKVYTECDGMEYESS   72 (130)
Q Consensus        44 YyyAVvecds~~tA~~iY~e~dG~E~e~s   72 (130)
                      .-||.|+|.+.+.|++..+ ++|..+.+-
T Consensus        41 ~~~afV~F~~~~~a~~al~-~~~~~l~gr   68 (75)
T d2msta_          41 RGFGFVTFESEDIVEKVCE-IHFHEINNK   68 (75)
T ss_dssp             CCEEEEECSCHHHHHHHHH-CSSCCBTTB
T ss_pred             CceeEEEECCHHHHHHHHh-cCCCEECCe
Confidence            3589999999999999985 999988663

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.65  E-value=0.36  Score=30.82  Aligned_cols=27  Identities=19%  Similarity=0.373  Sum_probs=25.3

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESS   72 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s   72 (130)
                      ||.|+|.+.+.|....++++|..+.+-
T Consensus        62 ~afV~f~~~~~A~~Ai~~lng~~~~g~   88 (102)
T d2cpza1          62 FGFVSYDNPVSAQAAIQSMNGFQIGMK   88 (102)
T ss_dssp             EEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred             ceEEEeCCHHHHHHHHHHhCCCEECCE
Confidence            899999999999999999999999764

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.53  E-value=0.33  Score=30.70  Aligned_cols=39  Identities=18%  Similarity=0.224  Sum_probs=33.4

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCcccccccccccccccCCCC
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDT   85 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVPDd~   85 (130)
                      -||.|+|.+.+.|.+..+.|+|..|.+  ..|-+.|-|+..
T Consensus        47 g~afV~f~~~~~A~~A~~~lng~~~~g--r~l~v~~a~~~~   85 (111)
T d1whxa_          47 ITAIVEFLEPLEARKAFRHLAYSKFHH--VPLYLEWAPIGV   85 (111)
T ss_dssp             SCEEEEESCHHHHHHHHHHHTTCBSSS--SBCEEEEEETTT
T ss_pred             ceEEEEEcCHHHHHHHHHHHcCCccCC--CeEEEEECCCCc
Confidence            389999999999999999999999987  456677777664

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.97  E-value=0.35  Score=32.15  Aligned_cols=33  Identities=24%  Similarity=0.449  Sum_probs=28.7

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.+.+.|....+.|+|.++.+  ..|-++|
T Consensus        86 ~afV~f~~~~~A~~Ai~~lng~~~~g--r~l~V~~  118 (139)
T d1u6fa1          86 YGFVKFQSGSSAQQAIAGLNGFNILN--KRLKVAL  118 (139)
T ss_dssp             EEEEEESSHHHHHHHHHHTTTEECSS--CEEEEEE
T ss_pred             eeeEEECCHHHHHHHHHHhCCCEECC--EEEEEEE
Confidence            79999999999999999999999976  4455555

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.77  E-value=0.44  Score=29.94  Aligned_cols=33  Identities=18%  Similarity=0.335  Sum_probs=27.3

Q ss_pred             eEEEEeCCHHHHHHHHHhc-CCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTEC-DGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~-dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.|.+.|.+..+.+ +|..+.+.  .|-+.|
T Consensus        53 ~afV~f~~~~~A~~Ai~~l~~~~~~~Gr--~l~V~~   86 (94)
T d2cpha1          53 FGFVDFITKQDAKKAFNALCHSTHLYGR--RLVLEW   86 (94)
T ss_dssp             EEEEEESSHHHHHHHHHHHHTCCBSSSC--BCEEEE
T ss_pred             EEEEEECCHHHHHHHHHHccCCcEECCE--EEEEEE
Confidence            8999999999999999998 89988774  344443

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.56  E-value=0.37  Score=30.87  Aligned_cols=33  Identities=15%  Similarity=0.212  Sum_probs=28.1

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.+.+.|.+.-+.++|..+.+.  .|-+.|
T Consensus        48 ~afV~f~~~~~A~~Ai~~l~g~~~~gr--~l~V~~   80 (114)
T d2f9da1          48 TAYVVYEDIFDAKNACDHLSGFNVCNR--YLVVLY   80 (114)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEE
T ss_pred             eEEEEECCHHHHHHHHHHhCCCEECCE--EEEEEE
Confidence            799999999999999999999999864  444444

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.52  E-value=0.38  Score=30.51  Aligned_cols=33  Identities=27%  Similarity=0.405  Sum_probs=28.4

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||.|+|.+.+.|.+..+.++|.++.+  ..|-++|
T Consensus        56 ~afV~f~~~~~A~~Ai~~l~~~~i~g--~~l~v~~   88 (96)
T d1x4ga1          56 YSFVRFSTHESAAHAIVSVNGTTIEG--HVVKCYW   88 (96)
T ss_dssp             EEEEEESSHHHHHHHHHHHTTCEETT--EECEEEC
T ss_pred             EEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEE
Confidence            79999999999999999999999976  4455554

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.49  E-value=0.72  Score=29.79  Aligned_cols=33  Identities=12%  Similarity=0.123  Sum_probs=28.7

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDL   78 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDL   78 (130)
                      ||.|+|.+.+.|.+.-+.|+|..+.+....+.+
T Consensus        48 ~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~   80 (104)
T d1weya_          48 RVRINFSNPLSAADARLRLHKTEFLGKEMKLYF   80 (104)
T ss_dssp             EEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred             EEEEEECCHHHHHHHHHHhcccccCCCEeEEee
Confidence            699999999999999999999999886644443

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.30  E-value=0.33  Score=30.23  Aligned_cols=29  Identities=21%  Similarity=0.327  Sum_probs=26.2

Q ss_pred             eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          45 YYAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        45 yyAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      -||-|+|.+.+.|.+..+.++|.++.+..
T Consensus        47 g~afV~F~~~~~A~~A~~~~~~~~~~g~~   75 (91)
T d1nu4a_          47 GQAFVIFKEVSSATNALRSMQGFPFYDKP   75 (91)
T ss_dssp             TCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             CceEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            47999999999999999999999988743

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.22  E-value=0.4  Score=30.08  Aligned_cols=28  Identities=25%  Similarity=0.247  Sum_probs=25.8

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|....+.++|..+.+..
T Consensus        53 ~afV~f~~~~~A~~Ai~~l~g~~~~g~~   80 (93)
T d1x5ua1          53 YGFVEFLSEEDADYAIKIMDMIKLYGKP   80 (93)
T ss_dssp             CEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred             ceEEEECCHHHHHHHHHHcCCCEECCEE
Confidence            8999999999999999999999997743

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.99  E-value=0.47  Score=30.46  Aligned_cols=36  Identities=17%  Similarity=0.206  Sum_probs=31.4

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccccCC
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPD   83 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVPD   83 (130)
                      ||.|+|.+++.|.+..+.++|..|.+  ..+-..|+|.
T Consensus        60 ~vfV~f~~~e~A~~A~~~l~Gr~f~g--R~v~v~f~~~   95 (104)
T d1o0pa_          60 KIFVEFTSVFDCQKAMQGLTGRKFAN--RVVVTKYCDP   95 (104)
T ss_dssp             EEEEEESCHHHHHHHHHHHSSCCSSS--SCCEEEEECH
T ss_pred             EEEEEECCHHHHHHHHHHHCCCEECC--eEEEEEEcCH
Confidence            79999999999999999999999977  5577777663

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.17  E-value=0.51  Score=28.76  Aligned_cols=28  Identities=21%  Similarity=0.255  Sum_probs=25.6

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.|.+.|.+.-++++|..+.+.-
T Consensus        53 ~afV~f~~~e~a~~Ai~~l~~~~l~gr~   80 (86)
T d2cqpa1          53 EAMVAFESRDEATAAVIDLNDRPIGSRK   80 (86)
T ss_dssp             EEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred             EEEEEEcCcHHHHHHHHHcCCCEECCEE
Confidence            8999999999999999999999987643

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.09  E-value=0.37  Score=29.89  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=27.9

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||-|+|.|.+.|.+..+.++|..+.+.  .|-++|
T Consensus        49 ~afV~f~~~~~A~~ai~~l~~~~i~g~--~l~v~~   81 (89)
T d2cqba1          49 FAFVEFELAEDAAAAIDNMNESELFGR--TIRVNL   81 (89)
T ss_dssp             EEEECCSSHHHHHHHHHHHTTEEETTE--EEEEEE
T ss_pred             eeEEEECCHHHHHHHHHHcCCCEECCE--EEEEEE
Confidence            799999999999999999999999874  344443

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.64  E-value=0.6  Score=29.83  Aligned_cols=33  Identities=21%  Similarity=0.270  Sum_probs=27.9

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF   80 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF   80 (130)
                      ||-|+|.+.+.|.+..+.++|..|.+  ..+-..|
T Consensus        59 ~~fV~f~~~e~A~~A~~~lng~~~~g--r~i~v~~   91 (99)
T d2dita1          59 VASVSFRDPEEADYCIQTLDGRWFGG--RQITAQA   91 (99)
T ss_dssp             EEEEECSCHHHHHHHHHHSTTCEETT--EECEEEE
T ss_pred             EEEEEECCHHHHHHHHHHhCCcEECC--EEEEEEE
Confidence            89999999999999999999999877  3344443

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.39  E-value=0.53  Score=28.99  Aligned_cols=28  Identities=14%  Similarity=0.316  Sum_probs=26.0

Q ss_pred             eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDGMEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG~E~e~s~   73 (130)
                      ||.|+|.+.+.|....+.++|..+.+.-
T Consensus        45 ~aFV~f~~~~~A~~a~~~l~~~~l~g~~   72 (85)
T d2u2fa_          45 YAFCEYVDINVTDQAIAGLNGMQLGDKK   72 (85)
T ss_dssp             EEEEEESSSHHHHHHHHTSSSCCCSSSC
T ss_pred             eEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            9999999999999999999999998743

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.31  E-value=0.54  Score=28.65  Aligned_cols=28  Identities=21%  Similarity=0.305  Sum_probs=24.7

Q ss_pred             eEEEEeCCHHHHHHHHHhcCC-ccccccc
Q psy7101          46 YAVVVFDSAESANKVYTECDG-MEYESSA   73 (130)
Q Consensus        46 yAVvecds~~tA~~iY~e~dG-~E~e~s~   73 (130)
                      ||.|+|.+.+.|.+.-++++| +++.+..
T Consensus        39 ~aFV~f~~~~~A~~Ai~~lng~~~~~G~~   67 (80)
T d2cqha1          39 YAFVDYPDQNWAIRAIETLSGKVELHGKI   67 (80)
T ss_dssp             EEEECCSCHHHHHHHHHHHTTTCEETTEE
T ss_pred             eEEEEECCHHHHHHHHHHhCCCeEECCEE
Confidence            799999999999999999999 4677644