Psyllid ID: psy7164
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2307 | 2.2.26 [Sep-21-2011] | |||||||
| O16140 | 1547 | DNA topoisomerase 2 OS=Bo | N/A | N/A | 0.241 | 0.359 | 0.614 | 0.0 | |
| O42130 | 1553 | DNA topoisomerase 2-alpha | yes | N/A | 0.238 | 0.354 | 0.604 | 0.0 | |
| P15348 | 1447 | DNA topoisomerase 2 OS=Dr | yes | N/A | 0.234 | 0.374 | 0.612 | 0.0 | |
| O42131 | 1627 | DNA topoisomerase 2-beta | no | N/A | 0.238 | 0.338 | 0.594 | 0.0 | |
| Q01320 | 1528 | DNA topoisomerase 2-alpha | yes | N/A | 0.234 | 0.354 | 0.597 | 0.0 | |
| P41515 | 1526 | DNA topoisomerase 2-alpha | yes | N/A | 0.242 | 0.366 | 0.584 | 0.0 | |
| O46374 | 1533 | DNA topoisomerase 2-alpha | yes | N/A | 0.234 | 0.353 | 0.600 | 0.0 | |
| P11388 | 1531 | DNA topoisomerase 2-alpha | yes | N/A | 0.234 | 0.354 | 0.596 | 0.0 | |
| Q64511 | 1612 | DNA topoisomerase 2-beta | no | N/A | 0.234 | 0.336 | 0.593 | 0.0 | |
| Q64399 | 1612 | DNA topoisomerase 2-beta | N/A | N/A | 0.237 | 0.339 | 0.589 | 0.0 |
| >sp|O16140|TOP2_BOMMO DNA topoisomerase 2 OS=Bombyx mori GN=TOP2 PE=2 SV=1 | Back alignment and function desciption |
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Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/671 (61%), Positives = 481/671 (71%), Gaps = 115/671 (17%)
Query: 13 QQNGNG-PSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETN 71
+QNG G P+P K K ++EKIYQKKSQLEHILLRPDTYIGSVE TETMW+ ++
Sbjct: 15 KQNGTGEPAPAK---GQKGAIEKIYQKKSQLEHILLRPDTYIGSVERATETMWVYDKVKE 71
Query: 72 HMERREITYVP-----GLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGK 126
M ++E+T VP GLYKI+DEILVNA DNKQRDPKM+ IKI +NQETNTISV+NNG
Sbjct: 72 CMMQKELTSVPDCSFPGLYKIYDEILVNAADNKQRDPKMDVIKIDINQETNTISVYNNGS 131
Query: 127 GIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKV 186
GIPVV HKDEKM+VPTMI FGHLLTSSNYNDEE+KV
Sbjct: 132 GIPVVMHKDEKMYVPTMI-------------------------FGHLLTSSNYNDEEEKV 166
Query: 187 TGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIK-SGSKDDFTKI 245
TGGRNGYGAKLCNIFS+KF VET+ +YKK FKQ W NM+K + P+IK SG DDFTKI
Sbjct: 167 TGGRNGYGAKLCNIFSTKFTVETASKQYKKHFKQTWGSNMTKASEPKIKDSGKDDDFTKI 226
Query: 246 TFTPDLTKFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTD- 304
F+PDL KFKM L+ D+V L++RRAYD AAS++ VKV+LNGE+L + F+DYV LY
Sbjct: 227 VFSPDLAKFKMEKLEDDIVLLMSRRAYDVAASSQGVKVYLNGERLKINKFKDYVDLYIKG 286
Query: 305 RQDEDGDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQI 364
+ DE+G P+K++YE V+ RWEVA+ SD GFQQVSFVNSIATTKGG+HVD V D++VK +
Sbjct: 287 KDDENGQPLKVVYEKVSDRWEVALTISDMGFQQVSFVNSIATTKGGKHVDTVADSVVKNV 346
Query: 365 IEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWI 424
+EV+KKKNK GG+ +KP+QVK H+W+
Sbjct: 347 LEVLKKKNK-----------------------------------GGVNIKPYQVKTHMWL 371
Query: 425 FINCLIVNPTFDSQTKENMTLQKGSFGSTC------------------------------ 454
F+NCLIVNPTFDSQTKENMTLQ SFGS C
Sbjct: 372 FVNCLIVNPTFDSQTKENMTLQAKSFGSKCNLSEKFITAVTKCGLVESVLTWAKFKAQDQ 431
Query: 455 --------------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGV 500
+PKLEDANDAGTKN+ CTLILTEGDSAK+LAVSGL VVGRD YGV
Sbjct: 432 LVKASGKKQSKLKGIPKLEDANDAGTKNAHLCTLILTEGDSAKTLAVSGLSVVGRDHYGV 491
Query: 501 FPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQD 560
FPL GK LNVR+A+HKQ+LEN EINNL+KILGLQY KKY +V+D+KTLRYG++MIM DQD
Sbjct: 492 FPLEGKPLNVRDASHKQVLENVEINNLIKILGLQYKKKYNSVDDLKTLRYGKVMIMADQD 551
Query: 561 QDGSHIKGLIINFIHHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETT 620
QDGSHIKGLIINFIHHNWP LL+LPFLEEFITPI+KATK +E+SFYSLPEFEEWK+ET
Sbjct: 552 QDGSHIKGLIINFIHHNWPELLKLPFLEEFITPIVKATKKDKEISFYSLPEFEEWKKETE 611
Query: 621 NWHTYKIKYYK 631
N HTY IKYYK
Sbjct: 612 NHHTYNIKYYK 622
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Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks. Bombyx mori (taxid: 7091) EC: 5EC: .EC: 9EC: 9EC: .EC: 1EC: .EC: 3 |
| >sp|O42130|TOP2A_CHICK DNA topoisomerase 2-alpha OS=Gallus gallus GN=TOP2A PE=2 SV=2 | Back alignment and function description |
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| >sp|P15348|TOP2_DROME DNA topoisomerase 2 OS=Drosophila melanogaster GN=Top2 PE=1 SV=1 | Back alignment and function description |
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| >sp|O42131|TOP2B_CHICK DNA topoisomerase 2-beta OS=Gallus gallus GN=TOP2B PE=2 SV=1 | Back alignment and function description |
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| >sp|Q01320|TOP2A_MOUSE DNA topoisomerase 2-alpha OS=Mus musculus GN=Top2a PE=1 SV=2 | Back alignment and function description |
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| >sp|P41515|TOP2A_CRIGR DNA topoisomerase 2-alpha OS=Cricetulus griseus GN=TOP2A PE=1 SV=1 | Back alignment and function description |
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| >sp|O46374|TOP2A_PIG DNA topoisomerase 2-alpha OS=Sus scrofa GN=TOP2A PE=2 SV=1 | Back alignment and function description |
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| >sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3 | Back alignment and function description |
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| >sp|Q64511|TOP2B_MOUSE DNA topoisomerase 2-beta OS=Mus musculus GN=Top2b PE=1 SV=2 | Back alignment and function description |
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| >sp|Q64399|TOP2B_CRILO DNA topoisomerase 2-beta OS=Cricetulus longicaudatus GN=TOP2B PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2307 | ||||||
| 170047758 | 1358 | DNA topoisomerase 2 [Culex quinquefascia | 0.241 | 0.410 | 0.648 | 0.0 | |
| 328724888 | 1537 | PREDICTED: DNA topoisomerase 2-like isof | 0.240 | 0.361 | 0.634 | 0.0 | |
| 158299572 | 1427 | AGAP008917-PA [Anopheles gambiae str. PE | 0.234 | 0.379 | 0.654 | 0.0 | |
| 157167886 | 1300 | DNA topoisomerase/gyrase [Aedes aegypti] | 0.241 | 0.429 | 0.644 | 0.0 | |
| 242016991 | 1223 | DNA topoisomerase 2-beta, putative [Pedi | 0.242 | 0.457 | 0.633 | 0.0 | |
| 312376011 | 1530 | hypothetical protein AND_13286 [Anophele | 0.242 | 0.366 | 0.627 | 0.0 | |
| 307180209 | 1502 | DNA topoisomerase 2 [Camponotus floridan | 0.239 | 0.367 | 0.617 | 0.0 | |
| 307211209 | 1492 | DNA topoisomerase 2 [Harpegnathos saltat | 0.239 | 0.369 | 0.618 | 0.0 | |
| 322786140 | 1518 | hypothetical protein SINV_05088 [Solenop | 0.241 | 0.366 | 0.613 | 0.0 | |
| 332027283 | 1552 | DNA topoisomerase 2 [Acromyrmex echinati | 0.240 | 0.356 | 0.616 | 0.0 |
| >gi|170047758|ref|XP_001851377.1| DNA topoisomerase 2 [Culex quinquefasciatus] gi|167870064|gb|EDS33447.1| DNA topoisomerase 2 [Culex quinquefasciatus] | Back alignment and taxonomy information |
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Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/665 (64%), Positives = 486/665 (73%), Gaps = 107/665 (16%)
Query: 14 QNGNGPSPKKKTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHM 73
QNG+G S+EKIYQKKSQLEHILLRPDTYIGSVE + ET W+ + E N M
Sbjct: 27 QNGSGAGATASPKVGGKSIEKIYQKKSQLEHILLRPDTYIGSVEQLKETQWIYDTEANKM 86
Query: 74 ERREITYVPGLYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEH 133
++EIT+VPGLYKIFDEILVNA DNKQRD KM IKI +NQETNTIS+WNNG+GIPVV H
Sbjct: 87 IQKEITFVPGLYKIFDEILVNAADNKQRDAKMTAIKIDINQETNTISIWNNGQGIPVVMH 146
Query: 134 KDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGY 193
K+EKM+VPTMIFGHLLTSSNYND EE KVTGGRNGY
Sbjct: 147 KEEKMYVPTMIFGHLLTSSNYND-------------------------EEQKVTGGRNGY 181
Query: 194 GAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSG-SKDDFTKITFTPDLT 252
GAKLCNIFS+KF VET+ +YKK+FKQ W DNMSK + P+IK G S +D+TKITF+PDLT
Sbjct: 182 GAKLCNIFSTKFTVETASKQYKKAFKQTWGDNMSKASEPKIKEGASGEDYTKITFSPDLT 241
Query: 253 KFKMTSLDKDMVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDED-GD 311
KFKM LD D+V L++RRA+D AAST+ V V+LNG+KLP+KNF+DY+ LY Q ED
Sbjct: 242 KFKMEKLDDDIVGLMSRRAFDVAASTRGVAVYLNGKKLPIKNFKDYIDLYVKEQQEDVSA 301
Query: 312 PVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKK 371
P+K+ YEN N RWEVA+A S++GFQQVSFVNSIATTKGGRHVD V D IVKQ+IEV+KKK
Sbjct: 302 PIKVCYENANERWEVAVAISEKGFQQVSFVNSIATTKGGRHVDYVTDMIVKQLIEVLKKK 361
Query: 372 NKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIV 431
NK GG+ +KPFQVKNH+W+FINCLIV
Sbjct: 362 NK-----------------------------------GGINIKPFQVKNHMWVFINCLIV 386
Query: 432 NPTFDSQTKENMTLQKGSFGSTC------------------------------------- 454
NPTFDSQTKENMTLQ SFGS C
Sbjct: 387 NPTFDSQTKENMTLQAKSFGSKCALSEKFITAVSKSGIVESVLQWAKFKAQTELNKASGS 446
Query: 455 -------VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKL 507
VPKLEDANDAGTKNS++CTLILTEGDSAK+LAVSGLGVVGRD YGVFPLRGKL
Sbjct: 447 KKSKIKGVPKLEDANDAGTKNSLNCTLILTEGDSAKTLAVSGLGVVGRDTYGVFPLRGKL 506
Query: 508 LNVREATHKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIK 567
LNVREATHKQILENAEINNL+KILGLQY KKY T++D+KTLRYG++MIMTDQDQDGSHIK
Sbjct: 507 LNVREATHKQILENAEINNLIKILGLQYKKKYLTIDDLKTLRYGKVMIMTDQDQDGSHIK 566
Query: 568 GLIINFIHHNWPTLLRLPFLEEFITPIIKATKAR-EELSFYSLPEFEEWKEETTNWHTYK 626
GL+INFIH NWP LLRLPFLEEFITPI+KATK EELSF+SLPEFEEWK ET N HTY
Sbjct: 567 GLLINFIHTNWPELLRLPFLEEFITPIVKATKKNGEELSFFSLPEFEEWKTETANSHTYN 626
Query: 627 IKYYK 631
IKYYK
Sbjct: 627 IKYYK 631
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Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328724888|ref|XP_001948540.2| PREDICTED: DNA topoisomerase 2-like isoform 1 [Acyrthosiphon pisum] gi|328724890|ref|XP_003248280.1| PREDICTED: DNA topoisomerase 2-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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| >gi|158299572|ref|XP_319665.4| AGAP008917-PA [Anopheles gambiae str. PEST] gi|157013582|gb|EAA14841.5| AGAP008917-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
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| >gi|157167886|ref|XP_001656143.1| DNA topoisomerase/gyrase [Aedes aegypti] gi|108871009|gb|EAT35234.1| AAEL012584-PA, partial [Aedes aegypti] | Back alignment and taxonomy information |
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| >gi|242016991|ref|XP_002428978.1| DNA topoisomerase 2-beta, putative [Pediculus humanus corporis] gi|212513807|gb|EEB16240.1| DNA topoisomerase 2-beta, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
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| >gi|312376011|gb|EFR23229.1| hypothetical protein AND_13286 [Anopheles darlingi] | Back alignment and taxonomy information |
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| >gi|307180209|gb|EFN68242.1| DNA topoisomerase 2 [Camponotus floridanus] | Back alignment and taxonomy information |
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| >gi|307211209|gb|EFN87409.1| DNA topoisomerase 2 [Harpegnathos saltator] | Back alignment and taxonomy information |
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| >gi|322786140|gb|EFZ12747.1| hypothetical protein SINV_05088 [Solenopsis invicta] | Back alignment and taxonomy information |
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| >gi|332027283|gb|EGI67367.1| DNA topoisomerase 2 [Acromyrmex echinatior] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2307 | ||||||
| UNIPROTKB|F1NZF0 | 1553 | TOP2A "DNA topoisomerase 2" [G | 0.073 | 0.109 | 0.788 | 3.1e-246 | |
| UNIPROTKB|O42130 | 1553 | TOP2A "DNA topoisomerase 2-alp | 0.073 | 0.109 | 0.788 | 8e-246 | |
| UNIPROTKB|F1MDU7 | 1533 | TOP2A "DNA topoisomerase 2" [B | 0.072 | 0.108 | 0.772 | 1.6e-244 | |
| MGI|MGI:98790 | 1528 | Top2a "topoisomerase (DNA) II | 0.072 | 0.109 | 0.772 | 3.7e-244 | |
| UNIPROTKB|J9PAY8 | 1541 | TOP2A "DNA topoisomerase 2" [C | 0.072 | 0.108 | 0.772 | 2.9e-243 | |
| UNIPROTKB|F1Q2M4 | 1533 | TOP2A "DNA topoisomerase 2" [C | 0.072 | 0.108 | 0.772 | 3.1e-243 | |
| UNIPROTKB|O42131 | 1627 | TOP2B "DNA topoisomerase 2-bet | 0.072 | 0.102 | 0.766 | 4.9e-243 | |
| UNIPROTKB|P41515 | 1526 | TOP2A "DNA topoisomerase 2-alp | 0.072 | 0.109 | 0.778 | 6.1e-243 | |
| UNIPROTKB|O46374 | 1533 | TOP2A "DNA topoisomerase 2-alp | 0.072 | 0.108 | 0.772 | 6.2e-243 | |
| UNIPROTKB|F1NR58 | 1627 | TOP2B "DNA topoisomerase 2" [G | 0.072 | 0.102 | 0.766 | 6.3e-243 |
| UNIPROTKB|F1NZF0 TOP2A "DNA topoisomerase 2" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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Score = 731 (262.4 bits), Expect = 3.1e-246, Sum P(7) = 3.1e-246
Identities = 134/170 (78%), Positives = 155/170 (91%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
VPKL+DANDAG KNSIDCTLILTEGDSAK+LAVSGLGVVGRDKYGVFPLRGK+LNVREA+
Sbjct: 439 VPKLDDANDAGNKNSIDCTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKMLNVREAS 498
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
HKQI+ENAEINN++KI+GLQY K Y E +K+LRYG++MIMTDQDQDGSHIKGL+INFI
Sbjct: 499 HKQIMENAEINNIIKIVGLQYKKNYEDRESLKSLRYGKIMIMTDQDQDGSHIKGLLINFI 558
Query: 575 HHNWPTLLRLPFLEEFITPIIKATKAREELSFYSLPEFEEWKEETTNWHT 624
HHNWP+LLR FLEEFITPIIK +K +EE+ FYS+PEFEEWK T N+++
Sbjct: 559 HHNWPSLLRHNFLEEFITPIIKVSKNKEEIPFYSIPEFEEWKSSTQNYNS 608
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| UNIPROTKB|O42130 TOP2A "DNA topoisomerase 2-alpha" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1MDU7 TOP2A "DNA topoisomerase 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| MGI|MGI:98790 Top2a "topoisomerase (DNA) II alpha" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9PAY8 TOP2A "DNA topoisomerase 2" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1Q2M4 TOP2A "DNA topoisomerase 2" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|O42131 TOP2B "DNA topoisomerase 2-beta" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P41515 TOP2A "DNA topoisomerase 2-alpha" [Cricetulus griseus (taxid:10029)] | Back alignment and assigned GO terms |
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| UNIPROTKB|O46374 TOP2A "DNA topoisomerase 2-alpha" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NR58 TOP2B "DNA topoisomerase 2" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 5.99.1.3 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.7.7 | LOW CONFIDENCE prediction! |
| 4th Layer | 2.7.7.7 | LOW CONFIDENCE prediction! |
| 3rd Layer | 5.99.1 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2307 | |||
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 0.0 | |
| PLN03128 | 1135 | PLN03128, PLN03128, DNA topoisomerase 2; Provision | 0.0 | |
| PLN03237 | 1465 | PLN03237, PLN03237, DNA topoisomerase 2; Provision | 0.0 | |
| smart00433 | 594 | smart00433, TOP2c, TopoisomeraseII | 0.0 | |
| COG0187 | 635 | COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/ | 1e-114 | |
| cd01701 | 404 | cd01701, PolY_Rev1, DNA polymerase Rev1 | 1e-87 | |
| cd03365 | 120 | cd03365, TOPRIM_TopoIIA, TOPRIM_TopoIIA: topoisome | 2e-75 | |
| PHA02569 | 602 | PHA02569, 39, DNA topoisomerase II large subunit; | 2e-69 | |
| cd03481 | 153 | cd03481, TopoIIA_Trans_ScTopoIIA, TopoIIA_Trans_Sc | 6e-63 | |
| cd01030 | 115 | cd01030, TOPRIM_TopoIIA_like, TOPRIM_TopoIIA_like: | 3e-59 | |
| cd01701 | 404 | cd01701, PolY_Rev1, DNA polymerase Rev1 | 1e-47 | |
| PLN03128 | 1135 | PLN03128, PLN03128, DNA topoisomerase 2; Provision | 3e-43 | |
| cd03586 | 334 | cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kapp | 3e-41 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 5e-41 | |
| smart00434 | 444 | smart00434, TOP4c, DNA Topoisomerase IV | 6e-41 | |
| PLN03237 | 1465 | PLN03237, PLN03237, DNA topoisomerase 2; Provision | 3e-39 | |
| pfam00521 | 427 | pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase | 2e-36 | |
| PRK05559 | 631 | PRK05559, PRK05559, DNA topoisomerase IV subunit B | 2e-36 | |
| COG0389 | 354 | COG0389, DinP, Nucleotidyltransferase/DNA polymera | 3e-35 | |
| TIGR01059 | 654 | TIGR01059, gyrB, DNA gyrase, B subunit | 3e-34 | |
| cd00187 | 445 | cd00187, TOP4c, DNA Topoisomerase, subtype IIA; do | 5e-34 | |
| PRK02406 | 343 | PRK02406, PRK02406, DNA polymerase IV; Validated | 8e-34 | |
| TIGR01058 | 637 | TIGR01058, parE_Gpos, DNA topoisomerase IV, B subu | 8e-32 | |
| cd00424 | 343 | cd00424, PolY, Y-family of DNA polymerases | 2e-28 | |
| pfam00204 | 173 | pfam00204, DNA_gyraseB, DNA gyrase B | 4e-25 | |
| PRK14133 | 347 | PRK14133, PRK14133, DNA polymerase IV; Provisional | 5e-24 | |
| PRK03348 | 454 | PRK03348, PRK03348, DNA polymerase IV; Provisional | 3e-23 | |
| PRK03352 | 346 | PRK03352, PRK03352, DNA polymerase IV; Validated | 6e-21 | |
| cd03366 | 114 | cd03366, TOPRIM_TopoIIA_GyrB, TOPRIM_TopoIIA_GyrB: | 1e-20 | |
| pfam00817 | 148 | pfam00817, IMS, impB/mucB/samB family | 4e-20 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 5e-20 | |
| cd03586 | 334 | cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kapp | 1e-19 | |
| PHA02592 | 439 | PHA02592, 52, DNA topisomerase II medium subunit; | 1e-18 | |
| TIGR01055 | 625 | TIGR01055, parE_Gneg, DNA topoisomerase IV, B subu | 2e-18 | |
| COG0188 | 804 | COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/ | 2e-18 | |
| cd01700 | 344 | cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Poly | 4e-18 | |
| PRK05644 | 638 | PRK05644, gyrB, DNA gyrase subunit B; Validated | 3e-17 | |
| cd01702 | 359 | cd01702, PolY_Pol_eta, DNA Polymerase eta | 3e-17 | |
| PRK02794 | 419 | PRK02794, PRK02794, DNA polymerase IV; Provisional | 5e-16 | |
| COG0389 | 354 | COG0389, DinP, Nucleotidyltransferase/DNA polymera | 1e-15 | |
| PRK03103 | 409 | PRK03103, PRK03103, DNA polymerase IV; Reviewed | 2e-15 | |
| cd00424 | 343 | cd00424, PolY, Y-family of DNA polymerases | 5e-15 | |
| pfam11799 | 136 | pfam11799, IMS_C, impB/mucB/samB family C-terminal | 2e-14 | |
| PRK01810 | 407 | PRK01810, PRK01810, DNA polymerase IV; Validated | 2e-14 | |
| cd12145 | 94 | cd12145, Rev1_C, C-terminal domain of the Y-family | 3e-14 | |
| PRK01810 | 407 | PRK01810, PRK01810, DNA polymerase IV; Validated | 4e-14 | |
| PRK01216 | 351 | PRK01216, PRK01216, DNA polymerase IV; Validated | 1e-13 | |
| PRK03858 | 396 | PRK03858, PRK03858, DNA polymerase IV; Validated | 3e-13 | |
| PRK02406 | 343 | PRK02406, PRK02406, DNA polymerase IV; Validated | 5e-13 | |
| PLN03237 | 1465 | PLN03237, PLN03237, DNA topoisomerase 2; Provision | 2e-12 | |
| PLN03128 | 1135 | PLN03128, PLN03128, DNA topoisomerase 2; Provision | 5e-12 | |
| pfam00817 | 148 | pfam00817, IMS, impB/mucB/samB family | 8e-12 | |
| PTZ00109 | 903 | PTZ00109, PTZ00109, DNA gyrase subunit b; Provisio | 2e-11 | |
| PRK14939 | 756 | PRK14939, gyrB, DNA gyrase subunit B; Provisional | 2e-11 | |
| PRK05644 | 638 | PRK05644, gyrB, DNA gyrase subunit B; Validated | 4e-11 | |
| PRK14133 | 347 | PRK14133, PRK14133, DNA polymerase IV; Provisional | 1e-10 | |
| PRK03352 | 346 | PRK03352, PRK03352, DNA polymerase IV; Validated | 2e-10 | |
| cd01703 | 379 | cd01703, PolY_Pol_iota, DNA Polymerase iota | 1e-09 | |
| cd00329 | 107 | cd00329, TopoII_MutL_Trans, MutL_Trans: transducer | 9e-09 | |
| pfam00533 | 77 | pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain | 1e-08 | |
| cd00187 | 445 | cd00187, TOP4c, DNA Topoisomerase, subtype IIA; do | 2e-08 | |
| PRK02794 | 419 | PRK02794, PRK02794, DNA polymerase IV; Provisional | 2e-08 | |
| smart00434 | 444 | smart00434, TOP4c, DNA Topoisomerase IV | 1e-07 | |
| cd00027 | 72 | cd00027, BRCT, Breast Cancer Suppressor Protein (B | 2e-07 | |
| PTZ00205 | 571 | PTZ00205, PTZ00205, DNA polymerase kappa; Provisio | 7e-07 | |
| PRK03858 | 396 | PRK03858, PRK03858, DNA polymerase IV; Validated | 2e-06 | |
| cd03468 | 335 | cd03468, PolY_like, DNA Polymerase Y-family | 4e-06 | |
| smart00292 | 78 | smart00292, BRCT, breast cancer carboxy-terminal d | 4e-06 | |
| cd01702 | 359 | cd01702, PolY_Pol_eta, DNA Polymerase eta | 5e-06 | |
| pfam00521 | 427 | pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase | 9e-06 | |
| PRK03103 | 409 | PRK03103, PRK03103, DNA polymerase IV; Reviewed | 2e-05 | |
| PTZ00205 | 571 | PTZ00205, PTZ00205, DNA polymerase kappa; Provisio | 3e-05 | |
| PRK03609 | 422 | PRK03609, umuC, DNA polymerase V subunit UmuC; Rev | 3e-05 | |
| cd01703 | 379 | cd01703, PolY_Pol_iota, DNA Polymerase iota | 1e-04 | |
| cd00188 | 83 | cd00188, TOPRIM, Topoisomerase-primase domain | 1e-04 | |
| pfam02518 | 111 | pfam02518, HATPase_c, Histidine kinase-, DNA gyras | 2e-04 | |
| pfam01751 | 86 | pfam01751, Toprim, Toprim domain | 2e-04 | |
| PRK05560 | 805 | PRK05560, PRK05560, DNA gyrase subunit A; Validate | 3e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-04 | |
| PRK05561 | 742 | PRK05561, PRK05561, DNA topoisomerase IV subunit A | 4e-04 | |
| smart00387 | 111 | smart00387, HATPase_c, Histidine kinase-like ATPas | 5e-04 | |
| TIGR01063 | 800 | TIGR01063, gyrA, DNA gyrase, A subunit | 9e-04 | |
| cd00075 | 103 | cd00075, HATPase_c, Histidine kinase-like ATPases; | 0.001 | |
| cd00822 | 172 | cd00822, TopoII_Trans_DNA_gyrase, TopoIIA_Trans_DN | 0.001 | |
| PRK03348 | 454 | PRK03348, PRK03348, DNA polymerase IV; Provisional | 0.002 | |
| TIGR01061 | 738 | TIGR01061, parC_Gpos, DNA topoisomerase IV, A subu | 0.002 | |
| PRK09631 | 635 | PRK09631, PRK09631, DNA topoisomerase IV subunit A | 0.002 |
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
Score = 842 bits (2176), Expect = 0.0
Identities = 334/654 (51%), Positives = 415/654 (63%), Gaps = 116/654 (17%)
Query: 30 MSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFD 89
+VE+ YQKK+Q+EHILLRPDTYIGS+E TE MW+ + E N M + ITYVPGLYKIFD
Sbjct: 4 KTVEERYQKKTQIEHILLRPDTYIGSIETQTEDMWVYDEEKNRMVYKTITYVPGLYKIFD 63
Query: 90 EILVNACDNKQRDP---KMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFG 146
EILVNA DNK RD +M IK+T+++E ISV+N+G+GIPV HK+ K++VP MIFG
Sbjct: 64 EILVNAADNKARDKGGHRMTYIKVTIDEENGEISVYNDGEGIPVQIHKEHKIYVPEMIFG 123
Query: 147 HLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSSKFV 206
HLLTSSNY+D E +VTG GRNG+GAKL NIFS+KF
Sbjct: 124 HLLTSSNYDDTEKRVTG-------------------------GRNGFGAKLTNIFSTKFT 158
Query: 207 VETSCSEYKKSFKQVWKDNMSKVTSPEIKS-GSKDDFTKITFTPDLTKFKMTSLDKDMVD 265
VE S+ K FK W DNMSK + P I S K D+TK+TF PD KF MT D DM+
Sbjct: 159 VECVDSKSGKKFKMTWTDNMSKKSEPRITSYDGKKDYTKVTFYPDYAKFGMTEFDDDMLR 218
Query: 266 LITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLY-TDRQDEDGDPVKIIYENVNPRW 324
L+ +R YD A +KV+LNGE++ +K+F+DYV LY D ++ P +Y +VN RW
Sbjct: 219 LLKKRVYDLAGCFGKLKVYLNGERIAIKSFKDYVDLYLPDGEEGKKPPYPFVYTSVNGRW 278
Query: 325 EVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFG 384
EV ++ SD FQQVSFVNSI TTKGG HV+ ++D ++ ++ E KKK K
Sbjct: 279 EVVVSLSDGQFQQVSFVNSICTTKGGTHVNYILDQLISKLQEKAKKKKK----------- 327
Query: 385 NKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLIVNPTFDSQTKENMT 444
G +KP Q+KNH+W+F+NCLIVNP+FDSQTKE +T
Sbjct: 328 ------------------------KGKEIKPNQIKNHLWVFVNCLIVNPSFDSQTKETLT 363
Query: 445 LQKGSFGSTCV---------------------------------------------PKLE 459
+ FGSTC PKL+
Sbjct: 364 TKPSKFGSTCELSEKLIKYVLKSPILENIVEWAQAKLAAELNKKMKAGKKSRILGIPKLD 423
Query: 460 DANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQIL 519
DANDAG KNS +CTLILTEGDSAK+LA++GL VVGRD YGVFPLRGKLLNVR+A+ KQ++
Sbjct: 424 DANDAGGKNSEECTLILTEGDSAKALALAGLSVVGRDYYGVFPLRGKLLNVRDASLKQLM 483
Query: 520 ENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWP 579
N EI NL KILGL KKY ED K LRYG LMIMTDQD DGSHIKGL+IN IHH WP
Sbjct: 484 NNKEIQNLFKILGLDIGKKY---EDPKGLRYGSLMIMTDQDHDGSHIKGLLINMIHHFWP 540
Query: 580 TLLRLP-FLEEFITPIIKATK-AREELSFYSLPEFEEWKEETTNWHTYKIKYYK 631
+LL+ P FL+EFITPI+KATK + +SF+++P+FE+WK +T +KIKYYK
Sbjct: 541 SLLKNPGFLKEFITPIVKATKKGNQVISFFTIPDFEKWK-QTVGLKGWKIKYYK 593
|
Length = 1388 |
| >gnl|CDD|215593 PLN03128, PLN03128, DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII | Back alignment and domain information |
|---|
| >gnl|CDD|223265 COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|176455 cd01701, PolY_Rev1, DNA polymerase Rev1 | Back alignment and domain information |
|---|
| >gnl|CDD|173785 cd03365, TOPRIM_TopoIIA, TOPRIM_TopoIIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II | Back alignment and domain information |
|---|
| >gnl|CDD|177398 PHA02569, 39, DNA topoisomerase II large subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|239563 cd03481, TopoIIA_Trans_ScTopoIIA, TopoIIA_Trans_ScTopoIIA: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topo IIA | Back alignment and domain information |
|---|
| >gnl|CDD|173780 cd01030, TOPRIM_TopoIIA_like, TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II | Back alignment and domain information |
|---|
| >gnl|CDD|176455 cd01701, PolY_Rev1, DNA polymerase Rev1 | Back alignment and domain information |
|---|
| >gnl|CDD|215593 PLN03128, PLN03128, DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|176459 cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa | Back alignment and domain information |
|---|
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|214660 smart00434, TOP4c, DNA Topoisomerase IV | Back alignment and domain information |
|---|
| >gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215969 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase IV, subunit A | Back alignment and domain information |
|---|
| >gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|223466 COG0389, DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233254 TIGR01059, gyrB, DNA gyrase, B subunit | Back alignment and domain information |
|---|
| >gnl|CDD|238111 cd00187, TOP4c, DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II | Back alignment and domain information |
|---|
| >gnl|CDD|235035 PRK02406, PRK02406, DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|130130 TIGR01058, parE_Gpos, DNA topoisomerase IV, B subunit, Gram-positive | Back alignment and domain information |
|---|
| >gnl|CDD|176453 cd00424, PolY, Y-family of DNA polymerases | Back alignment and domain information |
|---|
| >gnl|CDD|215785 pfam00204, DNA_gyraseB, DNA gyrase B | Back alignment and domain information |
|---|
| >gnl|CDD|184529 PRK14133, PRK14133, DNA polymerase IV; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235118 PRK03348, PRK03348, DNA polymerase IV; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179564 PRK03352, PRK03352, DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|173786 cd03366, TOPRIM_TopoIIA_GyrB, TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit | Back alignment and domain information |
|---|
| >gnl|CDD|216135 pfam00817, IMS, impB/mucB/samB family | Back alignment and domain information |
|---|
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|176459 cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa | Back alignment and domain information |
|---|
| >gnl|CDD|222896 PHA02592, 52, DNA topisomerase II medium subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|130127 TIGR01055, parE_Gneg, DNA topoisomerase IV, B subunit, proteobacterial | Back alignment and domain information |
|---|
| >gnl|CDD|223266 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|176454 cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V | Back alignment and domain information |
|---|
| >gnl|CDD|235542 PRK05644, gyrB, DNA gyrase subunit B; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|176456 cd01702, PolY_Pol_eta, DNA Polymerase eta | Back alignment and domain information |
|---|
| >gnl|CDD|179473 PRK02794, PRK02794, DNA polymerase IV; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223466 COG0389, DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|235104 PRK03103, PRK03103, DNA polymerase IV; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|176453 cd00424, PolY, Y-family of DNA polymerases | Back alignment and domain information |
|---|
| >gnl|CDD|221229 pfam11799, IMS_C, impB/mucB/samB family C-terminal | Back alignment and domain information |
|---|
| >gnl|CDD|179337 PRK01810, PRK01810, DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|213388 cd12145, Rev1_C, C-terminal domain of the Y-family polymerase Rev1 | Back alignment and domain information |
|---|
| >gnl|CDD|179337 PRK01810, PRK01810, DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|179251 PRK01216, PRK01216, DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|179663 PRK03858, PRK03858, DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|235035 PRK02406, PRK02406, DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215593 PLN03128, PLN03128, DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216135 pfam00817, IMS, impB/mucB/samB family | Back alignment and domain information |
|---|
| >gnl|CDD|240272 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237860 PRK14939, gyrB, DNA gyrase subunit B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235542 PRK05644, gyrB, DNA gyrase subunit B; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|184529 PRK14133, PRK14133, DNA polymerase IV; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179564 PRK03352, PRK03352, DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|176457 cd01703, PolY_Pol_iota, DNA Polymerase iota | Back alignment and domain information |
|---|
| >gnl|CDD|238202 cd00329, TopoII_MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins | Back alignment and domain information |
|---|
| >gnl|CDD|215978 pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain | Back alignment and domain information |
|---|
| >gnl|CDD|238111 cd00187, TOP4c, DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II | Back alignment and domain information |
|---|
| >gnl|CDD|179473 PRK02794, PRK02794, DNA polymerase IV; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|214660 smart00434, TOP4c, DNA Topoisomerase IV | Back alignment and domain information |
|---|
| >gnl|CDD|237994 cd00027, BRCT, Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|140232 PTZ00205, PTZ00205, DNA polymerase kappa; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179663 PRK03858, PRK03858, DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|176458 cd03468, PolY_like, DNA Polymerase Y-family | Back alignment and domain information |
|---|
| >gnl|CDD|214602 smart00292, BRCT, breast cancer carboxy-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|176456 cd01702, PolY_Pol_eta, DNA Polymerase eta | Back alignment and domain information |
|---|
| >gnl|CDD|215969 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase IV, subunit A | Back alignment and domain information |
|---|
| >gnl|CDD|235104 PRK03103, PRK03103, DNA polymerase IV; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|140232 PTZ00205, PTZ00205, DNA polymerase kappa; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179607 PRK03609, umuC, DNA polymerase V subunit UmuC; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|176457 cd01703, PolY_Pol_iota, DNA Polymerase iota | Back alignment and domain information |
|---|
| >gnl|CDD|173773 cd00188, TOPRIM, Topoisomerase-primase domain | Back alignment and domain information |
|---|
| >gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Back alignment and domain information |
|---|
| >gnl|CDD|216679 pfam01751, Toprim, Toprim domain | Back alignment and domain information |
|---|
| >gnl|CDD|235502 PRK05560, PRK05560, DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235503 PRK05561, PRK05561, DNA topoisomerase IV subunit A; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases | Back alignment and domain information |
|---|
| >gnl|CDD|233256 TIGR01063, gyrA, DNA gyrase, A subunit | Back alignment and domain information |
|---|
| >gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238419 cd00822, TopoII_Trans_DNA_gyrase, TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E | Back alignment and domain information |
|---|
| >gnl|CDD|235118 PRK03348, PRK03348, DNA polymerase IV; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233255 TIGR01061, parC_Gpos, DNA topoisomerase IV, A subunit, Gram-positive | Back alignment and domain information |
|---|
| >gnl|CDD|236598 PRK09631, PRK09631, DNA topoisomerase IV subunit A; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2307 | |||
| PLN03237 | 1465 | DNA topoisomerase 2; Provisional | 100.0 | |
| PTZ00108 | 1388 | DNA topoisomerase 2-like protein; Provisional | 100.0 | |
| PLN03128 | 1135 | DNA topoisomerase 2; Provisional | 100.0 | |
| COG0187 | 635 | GyrB Type IIA topoisomerase (DNA gyrase/topo II, t | 100.0 | |
| KOG0355|consensus | 842 | 100.0 | ||
| PTZ00109 | 903 | DNA gyrase subunit b; Provisional | 100.0 | |
| PHA02569 | 602 | 39 DNA topoisomerase II large subunit; Provisional | 100.0 | |
| TIGR01058 | 637 | parE_Gpos DNA topoisomerase IV, B subunit, Gram-po | 100.0 | |
| PRK14939 | 756 | gyrB DNA gyrase subunit B; Provisional | 100.0 | |
| PRK05559 | 631 | DNA topoisomerase IV subunit B; Reviewed | 100.0 | |
| PRK05644 | 638 | gyrB DNA gyrase subunit B; Validated | 100.0 | |
| TIGR01055 | 625 | parE_Gneg DNA topoisomerase IV, B subunit, proteob | 100.0 | |
| TIGR01059 | 654 | gyrB DNA gyrase, B subunit. This model describes t | 100.0 | |
| smart00433 | 594 | TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras | 100.0 | |
| KOG2093|consensus | 1016 | 100.0 | ||
| cd01701 | 404 | PolY_Rev1 DNA polymerase Rev1. Rev1 is a translesi | 100.0 | |
| PTZ00205 | 571 | DNA polymerase kappa; Provisional | 100.0 | |
| PRK01810 | 407 | DNA polymerase IV; Validated | 100.0 | |
| PRK03609 | 422 | umuC DNA polymerase V subunit UmuC; Reviewed | 100.0 | |
| PRK03858 | 396 | DNA polymerase IV; Validated | 100.0 | |
| PRK03103 | 409 | DNA polymerase IV; Reviewed | 100.0 | |
| PRK02794 | 419 | DNA polymerase IV; Provisional | 100.0 | |
| PRK01216 | 351 | DNA polymerase IV; Validated | 100.0 | |
| cd00424 | 343 | PolY Y-family of DNA polymerases. Y-family DNA pol | 100.0 | |
| PRK14133 | 347 | DNA polymerase IV; Provisional | 100.0 | |
| PRK03348 | 454 | DNA polymerase IV; Provisional | 100.0 | |
| PRK03352 | 346 | DNA polymerase IV; Validated | 100.0 | |
| cd01703 | 379 | PolY_Pol_iota DNA Polymerase iota. Pol iota, also | 100.0 | |
| cd03586 | 334 | PolY_Pol_IV_kappa DNA Polymerase IV/Kappa. Pol IV, | 100.0 | |
| cd01702 | 359 | PolY_Pol_eta DNA Polymerase eta. Pol eta, also cal | 100.0 | |
| cd01700 | 344 | PolY_Pol_V_umuC umuC subunit of DNA Polymerase V. | 100.0 | |
| PRK02406 | 343 | DNA polymerase IV; Validated | 100.0 | |
| KOG2094|consensus | 490 | 100.0 | ||
| KOG2095|consensus | 656 | 100.0 | ||
| COG0389 | 354 | DinP Nucleotidyltransferase/DNA polymerase involve | 100.0 | |
| PHA02592 | 439 | 52 DNA topisomerase II medium subunit; Provisional | 100.0 | |
| cd00187 | 445 | TOP4c DNA Topoisomerase, subtype IIA; domain A'; b | 100.0 | |
| smart00434 | 445 | TOP4c DNA Topoisomerase IV. Bacterial DNA topoisom | 100.0 | |
| cd03366 | 114 | TOPRIM_TopoIIA_GyrB TOPRIM_TopoIIA_GyrB: topoisome | 100.0 | |
| cd03468 | 335 | PolY_like DNA Polymerase Y-family. Y-family DNA po | 100.0 | |
| PF00521 | 426 | DNA_topoisoIV: DNA gyrase/topoisomerase IV, subuni | 100.0 | |
| cd01030 | 115 | TOPRIM_TopoIIA_like TOPRIM_TopoIIA_like: topoisome | 100.0 | |
| PRK05561 | 742 | DNA topoisomerase IV subunit A; Validated | 100.0 | |
| TIGR01061 | 738 | parC_Gpos DNA topoisomerase IV, A subunit, Gram-po | 100.0 | |
| PRK13979 | 957 | DNA topoisomerase IV subunit A; Provisional | 100.0 | |
| TIGR01062 | 735 | parC_Gneg DNA topoisomerase IV, A subunit, proteob | 100.0 | |
| COG0188 | 804 | GyrA Type IIA topoisomerase (DNA gyrase/topo II, t | 100.0 | |
| cd03365 | 120 | TOPRIM_TopoIIA TOPRIM_TopoIIA: topoisomerase-prima | 100.0 | |
| PRK05560 | 805 | DNA gyrase subunit A; Validated | 100.0 | |
| TIGR01063 | 800 | gyrA DNA gyrase, A subunit. This model describes t | 100.0 | |
| PRK09631 | 635 | DNA topoisomerase IV subunit A; Provisional | 100.0 | |
| PRK12758 | 869 | DNA topoisomerase IV subunit A; Provisional | 100.0 | |
| PRK09630 | 479 | DNA topoisomerase IV subunit A; Provisional | 100.0 | |
| PF00817 | 149 | IMS: impB/mucB/samB family; InterPro: IPR001126 In | 99.96 | |
| cd03481 | 153 | TopoIIA_Trans_ScTopoIIA TopoIIA_Trans_ScTopoIIA: T | 99.91 | |
| PF00204 | 173 | DNA_gyraseB: DNA gyrase B; InterPro: IPR013506 DNA | 99.86 | |
| cd00822 | 172 | TopoII_Trans_DNA_gyrase TopoIIA_Trans_DNA_gyrase: | 99.86 | |
| COG1389 | 538 | DNA topoisomerase VI, subunit B [DNA replication, | 99.64 | |
| KOG2093|consensus | 1016 | 99.56 | ||
| PRK00095 | 617 | mutL DNA mismatch repair protein; Reviewed | 99.53 | |
| TIGR01052 | 488 | top6b DNA topoisomerase VI, B subunit. This model | 99.49 | |
| PRK04184 | 535 | DNA topoisomerase VI subunit B; Validated | 99.36 | |
| KOG0966|consensus | 881 | 99.22 | ||
| PRK14867 | 659 | DNA topoisomerase VI subunit B; Provisional | 99.18 | |
| PF00533 | 78 | BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP | 98.98 | |
| TIGR00585 | 312 | mutl DNA mismatch repair protein MutL. All protein | 98.92 | |
| KOG3226|consensus | 508 | 98.9 | ||
| smart00292 | 80 | BRCT breast cancer carboxy-terminal domain. | 98.84 | |
| PF11799 | 127 | IMS_C: impB/mucB/samB family C-terminal domain; In | 98.81 | |
| PRK14868 | 795 | DNA topoisomerase VI subunit B; Provisional | 98.8 | |
| cd00027 | 72 | BRCT Breast Cancer Suppressor Protein (BRCA1), car | 98.66 | |
| PF01751 | 100 | Toprim: Toprim domain; InterPro: IPR006171 This is | 98.61 | |
| PF12738 | 63 | PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2W | 98.26 | |
| PF02518 | 111 | HATPase_c: Histidine kinase-, DNA gyrase B-, and H | 98.13 | |
| PRK14083 | 601 | HSP90 family protein; Provisional | 97.94 | |
| PF11798 | 32 | IMS_HHH: IMS family HHH motif; InterPro: IPR024728 | 97.81 | |
| PF13589 | 137 | HATPase_c_3: Histidine kinase-, DNA gyrase B-, and | 97.77 | |
| PRK05218 | 613 | heat shock protein 90; Provisional | 97.72 | |
| COG0326 | 623 | HtpG Molecular chaperone, HSP90 family [Posttransl | 97.54 | |
| PLN03122 | 815 | Poly [ADP-ribose] polymerase; Provisional | 97.43 | |
| KOG2481|consensus | 570 | 97.38 | ||
| cd00329 | 107 | TopoII_MutL_Trans MutL_Trans: transducer domain, h | 97.32 | |
| PLN03123 | 981 | poly [ADP-ribose] polymerase; Provisional | 97.23 | |
| COG5163 | 591 | NOP7 Protein required for biogenesis of the 60S ri | 96.99 | |
| PRK04301 | 317 | radA DNA repair and recombination protein RadA; Va | 96.98 | |
| PTZ00272 | 701 | heat shock protein 83 kDa (Hsp83); Provisional | 96.81 | |
| COG0323 | 638 | MutL DNA mismatch repair enzyme (predicted ATPase) | 96.67 | |
| KOG1929|consensus | 811 | 96.63 | ||
| cd00075 | 103 | HATPase_c Histidine kinase-like ATPases; This fami | 96.16 | |
| smart00387 | 111 | HATPase_c Histidine kinase-like ATPases. Histidine | 96.07 | |
| PTZ00130 | 814 | heat shock protein 90; Provisional | 95.98 | |
| TIGR02236 | 310 | recomb_radA DNA repair and recombination protein R | 95.64 | |
| TIGR01925 | 137 | spIIAB anti-sigma F factor. This model describes t | 95.21 | |
| TIGR01386 | 457 | cztS_silS_copS heavy metal sensor kinase. Members | 95.18 | |
| PRK04069 | 161 | serine-protein kinase RsbW; Provisional | 94.9 | |
| PF13581 | 125 | HATPase_c_2: Histidine kinase-like ATPase domain | 94.87 | |
| KOG1978|consensus | 672 | 94.85 | ||
| PRK10604 | 433 | sensor protein RstB; Provisional | 94.63 | |
| PRK15053 | 545 | dpiB sensor histidine kinase DpiB; Provisional | 94.62 | |
| COG2205 | 890 | KdpD Osmosensitive K+ channel histidine kinase [Si | 94.62 | |
| PF14520 | 60 | HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU | 94.57 | |
| TIGR02938 | 494 | nifL_nitrog nitrogen fixation negative regulator N | 94.43 | |
| cd01701 | 404 | PolY_Rev1 DNA polymerase Rev1. Rev1 is a translesi | 94.34 | |
| PRK03660 | 146 | anti-sigma F factor; Provisional | 94.3 | |
| TIGR01924 | 159 | rsbW_low_gc serine-protein kinase RsbW. This model | 94.21 | |
| COG4191 | 603 | Signal transduction histidine kinase regulating C4 | 94.17 | |
| KOG1979|consensus | 694 | 94.15 | ||
| PRK11006 | 430 | phoR phosphate regulon sensor protein; Provisional | 94.08 | |
| PRK10549 | 466 | signal transduction histidine-protein kinase BaeS; | 93.96 | |
| PRK11086 | 542 | sensory histidine kinase DcuS; Provisional | 93.93 | |
| COG3920 | 221 | Signal transduction histidine kinase [Signal trans | 93.89 | |
| PRK10364 | 457 | sensor protein ZraS; Provisional | 93.78 | |
| PF13438 | 52 | DUF4113: Domain of unknown function (DUF4113) | 93.68 | |
| COG3290 | 537 | CitA Signal transduction histidine kinase regulati | 93.62 | |
| KOG3548|consensus | 1176 | 93.55 | ||
| PRK09303 | 380 | adaptive-response sensory kinase; Validated | 93.39 | |
| COG3850 | 574 | NarQ Signal transduction histidine kinase, nitrate | 93.33 | |
| PF11731 | 93 | Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd | 92.99 | |
| TIGR03785 | 703 | marine_sort_HK proteobacterial dedicated sortase s | 92.95 | |
| PRK09835 | 482 | sensor kinase CusS; Provisional | 92.92 | |
| PRK10755 | 356 | sensor protein BasS/PmrB; Provisional | 92.54 | |
| KOG1929|consensus | 811 | 92.38 | ||
| PRK10337 | 449 | sensor protein QseC; Provisional | 92.29 | |
| PRK11100 | 475 | sensory histidine kinase CreC; Provisional | 92.25 | |
| TIGR02966 | 333 | phoR_proteo phosphate regulon sensor kinase PhoR. | 92.02 | |
| TIGR02916 | 679 | PEP_his_kin putative PEP-CTERM system histidine ki | 91.76 | |
| PRK11073 | 348 | glnL nitrogen regulation protein NR(II); Provision | 90.87 | |
| PRK11360 | 607 | sensory histidine kinase AtoS; Provisional | 90.63 | |
| PRK09467 | 435 | envZ osmolarity sensor protein; Provisional | 90.53 | |
| PRK10815 | 485 | sensor protein PhoQ; Provisional | 90.44 | |
| PRK15347 | 921 | two component system sensor kinase SsrA; Provision | 90.24 | |
| PRK09470 | 461 | cpxA two-component sensor protein; Provisional | 90.2 | |
| COG4585 | 365 | Signal transduction histidine kinase [Signal trans | 90.17 | |
| PRK06063 | 313 | DNA polymerase III subunit epsilon; Provisional | 90.05 | |
| PRK14350 | 669 | ligA NAD-dependent DNA ligase LigA; Provisional | 90.05 | |
| PRK13837 | 828 | two-component VirA-like sensor kinase; Provisional | 90.05 | |
| COG0642 | 336 | BaeS Signal transduction histidine kinase [Signal | 89.39 | |
| PRK11466 | 914 | hybrid sensory histidine kinase TorS; Provisional | 89.26 | |
| PRK10490 | 895 | sensor protein KdpD; Provisional | 89.18 | |
| KOG3524|consensus | 850 | 89.13 | ||
| PRK12766 | 232 | 50S ribosomal protein L32e; Provisional | 88.7 | |
| PRK07956 | 665 | ligA NAD-dependent DNA ligase LigA; Validated | 88.18 | |
| KOG1977|consensus | 1142 | 88.17 | ||
| PRK14351 | 689 | ligA NAD-dependent DNA ligase LigA; Provisional | 87.65 | |
| KOG0966|consensus | 881 | 87.08 | ||
| KOG2043|consensus | 896 | 86.77 | ||
| PRK10618 | 894 | phosphotransfer intermediate protein in two-compon | 85.97 | |
| PF08827 | 59 | DUF1805: Domain of unknown function (DUF1805); Int | 85.77 | |
| COG4192 | 673 | Signal transduction histidine kinase regulating ph | 85.43 | |
| COG2172 | 146 | RsbW Anti-sigma regulatory factor (Ser/Thr protein | 84.92 | |
| PRK11644 | 495 | sensory histidine kinase UhpB; Provisional | 84.83 | |
| PRK10600 | 569 | nitrate/nitrite sensor protein NarX; Provisional | 84.64 | |
| PRK13560 | 807 | hypothetical protein; Provisional | 84.48 | |
| TIGR02956 | 968 | TMAO_torS TMAO reductase sytem sensor TorS. This p | 84.27 | |
| COG0272 | 667 | Lig NAD-dependent DNA ligase (contains BRCT domain | 84.11 | |
| PRK10841 | 924 | hybrid sensory kinase in two-component regulatory | 84.1 | |
| TIGR00575 | 652 | dnlj DNA ligase, NAD-dependent. The member of this | 83.14 | |
| PRK13557 | 540 | histidine kinase; Provisional | 82.99 | |
| PRK11091 | 779 | aerobic respiration control sensor protein ArcB; P | 82.98 | |
| PRK06195 | 309 | DNA polymerase III subunit epsilon; Validated | 82.87 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 81.64 | |
| COG3851 | 497 | UhpB Signal transduction histidine kinase, glucose | 80.49 |
| >PLN03237 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-203 Score=1995.97 Aligned_cols=818 Identities=54% Similarity=0.891 Sum_probs=707.4
Q ss_pred CCCCCChhhhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCC
Q psy7164 26 PANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKM 105 (2307)
Q Consensus 26 ~~~~~~~~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~ 105 (2307)
..+.+++|++||+|+++||||+||||||||++..++.|||| ++++|++++|+|+||||||||||||||+||++|+|+|
T Consensus 22 ~~~~~~~~~~Yqkls~lEhVr~RP~mYIGSt~~~~~~~wv~--~~~~m~~~~v~~vpGL~kifdEIldNAvDe~~r~g~~ 99 (1465)
T PLN03237 22 SSGGKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVY--ETDKMVQRSVTYVPGLYKIFDEILVNAADNKQRDPKM 99 (1465)
T ss_pred ccCCCcHHHhhhccccchHHhcCCCCEeCCCCcccceeeee--ccccceeeeccccchhhhhHHHHhhhhHhHHhhcCCC
Confidence 45689999999999999999999999999999999999999 4689999999999999999999999999999999999
Q ss_pred CeEEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccc
Q psy7164 106 NCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDK 185 (2307)
Q Consensus 106 ~~I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk 185 (2307)
+.|+|+|+.++|+|+|+||||||||++|+++|+|+||+|||+|||| ||||+++|+
T Consensus 100 ~~I~V~I~~~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAG-------------------------gkFdd~~yK 154 (1465)
T PLN03237 100 DSLRVVIDVEQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTS-------------------------SNYDDNEKK 154 (1465)
T ss_pred CEEEEEEEcCCCEEEEEecCccccCCCCCCCCCccceEEEEeeecc-------------------------ccCCCCcce
Confidence 9999999988899999999999999999999999999999999999 999999999
Q ss_pred cccCCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCCC-CCCCcEEEEEeCcccccccccCHHHH
Q psy7164 186 VTGGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGS-KDDFTKITFTPDLTKFKMTSLDKDMV 264 (2307)
Q Consensus 186 ~sgGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~~-~~~GT~VtF~PD~~iF~~~~f~~d~l 264 (2307)
+||||||||+|||||||+||+|+|++.++|+.|+|.|++||.....+.++.+. +++||+|+|+||++||++..|++|+|
T Consensus 155 vSGGlhGVGasvvNaLS~~f~Vev~Dg~~gk~y~Q~f~~nmG~~~~p~i~~~~~~~~GT~VtF~PD~eiF~~~~fd~D~l 234 (1465)
T PLN03237 155 TTGGRNGYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMGKKSEPVITKCKKSENWTKVTFKPDLAKFNMTHLEDDVV 234 (1465)
T ss_pred eeccccccCccccccccCeeEEEEEECCCCeEEEEEEeCCCCccCCceeccCCCCCCceEEEEEECHHHhCCceEcHHHH
Confidence 99999999999999999999999998778999999999988877777665543 47999999999999999999999999
Q ss_pred HHHHHHHHHhh-ccCCCcEEEeccccCCccchHHHHHHHhccCCCC-CCCeEEEEEecCCeeEEEEeecCCCceEEEeeC
Q psy7164 265 DLITRRAYDAA-ASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDED-GDPVKIIYENVNPRWEVAIAPSDRGFQQVSFVN 342 (2307)
Q Consensus 265 ~~l~~Rl~dlA-~LnpGLkI~lnder~~~~G~~dYV~~~~~~~~~~-~~~~~ii~e~~~~~~EVAl~~s~~~y~~~SFVN 342 (2307)
.+|.+|++|+| |||+||+|+|+|+|...+||++||++|.+..+.. ..++.++++..+.+|||||+|++++++++||||
T Consensus 235 ~~~~rRlrdLAa~LnkGlkI~LndeR~~~~G~kdYV~~yl~~~~k~k~~~~~~i~e~~~~~~EVAl~~sd~~~~~~SFVN 314 (1465)
T PLN03237 235 ALMKKRVVDIAGCLGKTVKVELNGKRIPVKSFSDYVDLYLESANKSRPENLPRIYEKVNDRWEVCVSLSEGQFQQVSFVN 314 (1465)
T ss_pred HHHHHHHHHHHhccCCCcEEEEEecCCCCCCHHHHHHHHhhcccccCCCCCCccEecCCCeEEEEEEEeCCCceEEEEEC
Confidence 99999999999 9999999999999988889999999876321111 111224466678899999999987788999999
Q ss_pred CccCCCCcchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhhhhcccccccccccccccCChHhHhcce
Q psy7164 343 SIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHI 422 (2307)
Q Consensus 343 nI~T~eGGTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk~~dIre~L 422 (2307)
||+|++|||||+||+++|+++|++|+++|++ ...|+++|||+||
T Consensus 315 nI~T~~GGTHv~g~~~aIt~~l~~~~~kK~k------------------------------------~~~l~~~DIregL 358 (1465)
T PLN03237 315 SIATIKGGTHVDYVTNQIANHVMEAVNKKNK------------------------------------NANIKAHNVKNHL 358 (1465)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHHHHHhccC------------------------------------CCCCCHHHHHhCc
Confidence 9999999999999999999999999976543 1357899999999
Q ss_pred EEEEEeecCCCcccchhhhhhhccccccccc--------------------------------------------ccccc
Q psy7164 423 WIFINCLIVNPTFDSQTKENMTLQKGSFGST--------------------------------------------CVPKL 458 (2307)
Q Consensus 423 ~~~Vsvki~nP~FegQTKekL~~~~~~~~~k--------------------------------------------~lpKL 458 (2307)
++||||+|+||+|+||||++|++....|+++ .+|||
T Consensus 359 ~a~IsvkI~nP~FesQTKekLtn~~~~f~s~l~l~~~flk~~~~~~Ivekil~~A~ak~arel~k~k~~k~~~~~~ipKL 438 (1465)
T PLN03237 359 WVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKVMKSGIVENLLSWADFKQSKELKKTDGAKTTRVTGIPKL 438 (1465)
T ss_pred EEEEEEeCCCCccCCcccCcccChHHHHHHHhccCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCccc
Confidence 9999999999999999999998742222110 17899
Q ss_pred ccccccCCCCCCCcEEEEEecCccchhcccCcccccccceeeccCCcccchhhccchHHHhhcHHHHHHHHHhccccCCC
Q psy7164 459 EDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQYSKK 538 (2307)
Q Consensus 459 ~Dc~~a~tk~~~~ceLfIvEGDSA~~~a~sGsak~gRD~qaIlPLRGKiLNV~ka~~~ki~~N~EI~~Li~aLGlg~~~~ 538 (2307)
+||+.||++++++|||||||||||||||++|.++.+|++|||||||||||||++++.+||++|+||++||+|||||++++
T Consensus 439 ~Dc~~aG~kd~~~ceLfLvEGDSAgGsAk~GR~vvdR~~qaIlPLRGKILNV~kAs~~kil~N~EI~~ii~aLGlgig~~ 518 (1465)
T PLN03237 439 EDANEAGGKNSEKCTLILTEGDSAKALAVAGLSVVGRNYYGVFPLRGKLLNVREASHKQIMNNAEIENIKQILGLQHGKQ 518 (1465)
T ss_pred ccccccccCCccccEEEEEecCcCCchhhhhhcccCccceeeeccCCceehhccCcHHhhhcchHHHHHHHHhCCCcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCcCCCCCCCCCcEEecccCCCCCCchhHHHHHHHHHhhhhhhc-CCcEEEecCcEEEEEe-CCeEEEEeChHHHHHHH
Q psy7164 539 YTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR-LPFLEEFITPIIKATK-AREELSFYSLPEFEEWK 616 (2307)
Q Consensus 539 y~~~~d~~~LRYgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~-~G~vy~~~tPL~kv~~-gk~~~~fys~~e~~~~~ 616 (2307)
| ||+++||||||||||||||||+|||||||||||||||+||+ .||||+|+||||||++ |++++||||++||++|+
T Consensus 519 y---~d~~~LRYgkIiIMTDADvDGsHIrgLLLtFF~r~~P~Li~~~Gfl~~~~tPL~Kv~~~gk~~~~fys~~E~e~w~ 595 (1465)
T PLN03237 519 Y---ESVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSLLKVPSFLVEFITPIVKATRRGKKVLSFYSMPEYEEWK 595 (1465)
T ss_pred c---CcccccccCcEEEEeCCCCCccHHHHHHHHHHHHhhHHhcccCCEEEEecCCeEEEEECCCeeEeecCHHHHHHHH
Confidence 7 68999999999999999999999999999999999999999 8999999999999999 99999999999999999
Q ss_pred HHhcC-CCccCcEEeccc----------ccCc------------------------------------------------
Q psy7164 617 EETTN-WHTYKIKYYKVV----------YVTG------------------------------------------------ 637 (2307)
Q Consensus 617 ~~~~~-~~~~~ikryKGL----------yf~~------------------------------------------------ 637 (2307)
+++.+ .++|+||||||| ||+.
T Consensus 596 ~~~~~~~~~~~IkyYKGLGe~~~~e~keyf~~~~~h~~~f~~~~~~~~~~i~laF~k~~~d~RK~Wl~~~~~~~~ld~~~ 675 (1465)
T PLN03237 596 ESLGGNATGWSIKYYKGLGTSTAKEGKEYFKNLGKHKKDFVWEDEQDGDAIELAFSKKKIEARKNWLRQYEPGTHLDQTQ 675 (1465)
T ss_pred HHhcccCCceeeEeeccCCCCCHHHHHHHHHhHHhceEEEEECCCCcHHHHHHHhCCccHHHHHHHHHhCCCCccccCCC
Confidence 98753 468999999999 8870
Q ss_pred ------------eeeeecCC------------------------------------------------c-----------
Q psy7164 638 ------------VLLFKMNL------------------------------------------------H----------- 646 (2307)
Q Consensus 638 ------------l~~f~~~~------------------------------------------------H----------- 646 (2307)
||+|+|.+ |
T Consensus 676 ~~i~~~dfinkeli~ySm~~i~RAIP~v~DGLKPvQRkILya~~k~~~~~~~KvAqlvG~V~e~~~YHHGd~Sly~tiV~ 755 (1465)
T PLN03237 676 KDVKYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFCSFKRNFVKEAKVAQLSGYVSEHSAYHHGEQSLASTIIG 755 (1465)
T ss_pred CcccHHHHHHHHHHHHHHHHHhccCCchhcCCCchHhHHHHHHHhcCCccccchhhhHHHHhhhccCCCcHHHHHHHHHH
Confidence 55553322 3
Q ss_pred ----ccCC--------------------Cccc---cc-------------------------CCCCCCccccCCCCeeee
Q psy7164 647 ----KVTS--------------------DSIS---MF-------------------------IGRIEPEWYIPIIPMVLV 674 (2307)
Q Consensus 647 ----fVGS--------------------D~As---iF-------------------------g~~iEP~vlppiiP~LLV 674 (2307)
|||| |+|| || |+.+||+||||+||||||
T Consensus 756 MAQdfvGsnnipLl~p~GnFGSR~~gG~daAA~RYietrLs~ia~~lf~~~Dd~~l~~~n~Dg~~iEP~~y~piiP~lLV 835 (1465)
T PLN03237 756 MAQDFVGSNNINLLLPNGQFGTRLQGGKDHASARYIFTRLSPITRFLFPKDDDILLDYLNEDGQSIEPTWYMPIIPTVLV 835 (1465)
T ss_pred HhhccccccccceeecCCCCCCCCCCCCcccccccceechhHHHHHHhccCCccccCccCCCCcccCCceecCCCcceee
Confidence 9888 6777 22 999999999999999999
Q ss_pred cCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCCCCCcccCCCCCcEEEEe----cCcEEEEEEEEEEEcCCeEEEEec
Q psy7164 675 NGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNFKGEIDYC----GDSRFVVNGEIAILDDDKLEITEL 750 (2307)
Q Consensus 675 NGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~~~l~P~ykGf~G~I~~t----g~g~~~vrG~~~~~~~~~IvITEL 750 (2307)
|||+|||||||||||||||+|||+||+++|+|+++.+|.|||+||+|+|+.. |+|+|+++|+++++++++|+||||
T Consensus 836 NGa~GIatG~sT~IPphNp~eVi~~i~~~i~~e~~~~~~P~~~gf~G~I~~~~~t~g~g~~~~rG~~~~~~~~~i~ITEl 915 (1465)
T PLN03237 836 NGAEGIGTGWSTFIPNYNPRDIVANIRRLLNGESMEPMHPWYRGFKGTIEKTASKEGGCTYTITGLYEEVDETTLRITEL 915 (1465)
T ss_pred cCCcceecccccCCCCCCHHHHHHHHHHHhcCCCcCCCCCeecCCCceEeEhhhcCCCceEEEEEEEEEecCCeEEEEeC
Confidence 9999999999999999999999999999999999999999999999988664 999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHhc---CCCc---Cc---cc-----------------------------------------cCCC
Q psy7164 751 QVGKWTTDYKDTLDTLLH---GAEK---DE---VH-----------------------------------------PGPG 780 (2307)
Q Consensus 751 Py~v~t~~~~e~La~Lv~---~~~~---~~---y~-----------------------------------------~t~~ 780 (2307)
||++||++|++.|+.|++ ++++ .+ |+ +++.
T Consensus 916 P~~~~t~~y~~~le~i~~~~~~~k~~~I~d~~d~s~~~~vr~vI~lk~~~~~~~~~~~L~k~~kL~~s~~~~nm~l~d~~ 995 (1465)
T PLN03237 916 PIRRWTDDYKEFLESLKTDNNKNKDPFIKDVKAYNDDTTVHFEVILSEENMLAAKQEGLLKKFKLTTTISTSNMHLFDSK 995 (1465)
T ss_pred CCeecchHHHHHHHHHHHHHhccCcCceeechhccCCceEEEEEEeccchhHHHHHHHHHHhhcCcceeceeEEEEEcCC
Confidence 999999888776666653 3321 11 11 1121
Q ss_pred -C---CCCHHHHHHHHHHHHHHHHHHHHHh-----------hhh-----------------------HHHhhcc-cCCCc
Q psy7164 781 -R---KSHPRPIAPKSYKIDDDSEEEEIEE-----------VFH-----------------------DNELAKP-QKTGP 821 (2307)
Q Consensus 781 -~---~~sl~eIL~eF~~~Rl~~y~rr~e~-----------l~n-----------------------i~~li~~-~~~d~ 821 (2307)
+ ++++.+||++||+||+++|++|.++ +.| +.+|.+. |.+.+
T Consensus 996 G~i~k~~~~~~Il~~F~~~Rl~~Y~kRk~~~~~~~~~el~k~~~k~~fI~~vi~g~i~i~~k~k~~l~~~L~~~gf~~~~ 1075 (1465)
T PLN03237 996 GVIKKYDTPEQILEEFFHLRLEYYEKRKEVLLKNLEFELLKLENKVRFILAVVDGEIIVNNRKKADLVEELRQKGFTPFP 1075 (1465)
T ss_pred CCcceeCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEccCCHHHHHHHHHHcCCCccc
Confidence 1 5999999999999999999988766 222 2333333 44433
Q ss_pred hHHHHHHHhhccccccccccCCC------CCCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHccCchhhHH
Q psy7164 822 QLERQERQAAEGEDDEAGSQTQE------EEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTELNILKKKAPTDLWS 895 (2307)
Q Consensus 822 ~~a~~~~~~~~~~~~~~~~~~~~------~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~ei~~L~~~s~~~lw~ 895 (2307)
...+..........+..+...+. ......+|||||+||||+||.|++++|++|++++++|++.|++++|++||+
T Consensus 1076 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~i~slT~E~~~kL~~~~~~k~~el~~l~~~t~~~lW~ 1155 (1465)
T PLN03237 1076 KKAKSVEAAVAGATDDAAEEEEEIDVSSSSGVRGSDYDYLLSMAIGTLTLEKVQELCADRDKLNIEVEDLKKTTPKSLWL 1155 (1465)
T ss_pred hhhcccccccccccccccccccccccccccccccccchHHhcCcHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 32221110000000000000000 001124799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCC
Q psy7164 896 DDLDALREKDKIHP 909 (2307)
Q Consensus 896 ~DL~el~k~l~k~~ 909 (2307)
+||++|+++|++..
T Consensus 1156 ~DLd~f~~~~~~~~ 1169 (1465)
T PLN03237 1156 KDLDALEKELDKLD 1169 (1465)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
|
|
| >PTZ00108 DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >PLN03128 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0355|consensus | Back alignment and domain information |
|---|
| >PTZ00109 DNA gyrase subunit b; Provisional | Back alignment and domain information |
|---|
| >PHA02569 39 DNA topoisomerase II large subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive | Back alignment and domain information |
|---|
| >PRK14939 gyrB DNA gyrase subunit B; Provisional | Back alignment and domain information |
|---|
| >PRK05559 DNA topoisomerase IV subunit B; Reviewed | Back alignment and domain information |
|---|
| >PRK05644 gyrB DNA gyrase subunit B; Validated | Back alignment and domain information |
|---|
| >TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial | Back alignment and domain information |
|---|
| >TIGR01059 gyrB DNA gyrase, B subunit | Back alignment and domain information |
|---|
| >smart00433 TOP2c TopoisomeraseII | Back alignment and domain information |
|---|
| >KOG2093|consensus | Back alignment and domain information |
|---|
| >cd01701 PolY_Rev1 DNA polymerase Rev1 | Back alignment and domain information |
|---|
| >PTZ00205 DNA polymerase kappa; Provisional | Back alignment and domain information |
|---|
| >PRK01810 DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >PRK03609 umuC DNA polymerase V subunit UmuC; Reviewed | Back alignment and domain information |
|---|
| >PRK03858 DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >PRK03103 DNA polymerase IV; Reviewed | Back alignment and domain information |
|---|
| >PRK02794 DNA polymerase IV; Provisional | Back alignment and domain information |
|---|
| >PRK01216 DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >cd00424 PolY Y-family of DNA polymerases | Back alignment and domain information |
|---|
| >PRK14133 DNA polymerase IV; Provisional | Back alignment and domain information |
|---|
| >PRK03348 DNA polymerase IV; Provisional | Back alignment and domain information |
|---|
| >PRK03352 DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >cd01703 PolY_Pol_iota DNA Polymerase iota | Back alignment and domain information |
|---|
| >cd03586 PolY_Pol_IV_kappa DNA Polymerase IV/Kappa | Back alignment and domain information |
|---|
| >cd01702 PolY_Pol_eta DNA Polymerase eta | Back alignment and domain information |
|---|
| >cd01700 PolY_Pol_V_umuC umuC subunit of DNA Polymerase V | Back alignment and domain information |
|---|
| >PRK02406 DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >KOG2094|consensus | Back alignment and domain information |
|---|
| >KOG2095|consensus | Back alignment and domain information |
|---|
| >COG0389 DinP Nucleotidyltransferase/DNA polymerase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PHA02592 52 DNA topisomerase II medium subunit; Provisional | Back alignment and domain information |
|---|
| >cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II | Back alignment and domain information |
|---|
| >smart00434 TOP4c DNA Topoisomerase IV | Back alignment and domain information |
|---|
| >cd03366 TOPRIM_TopoIIA_GyrB TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit | Back alignment and domain information |
|---|
| >cd03468 PolY_like DNA Polymerase Y-family | Back alignment and domain information |
|---|
| >PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i | Back alignment and domain information |
|---|
| >cd01030 TOPRIM_TopoIIA_like TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II | Back alignment and domain information |
|---|
| >PRK05561 DNA topoisomerase IV subunit A; Validated | Back alignment and domain information |
|---|
| >TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive | Back alignment and domain information |
|---|
| >PRK13979 DNA topoisomerase IV subunit A; Provisional | Back alignment and domain information |
|---|
| >TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial | Back alignment and domain information |
|---|
| >COG0188 GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >cd03365 TOPRIM_TopoIIA TOPRIM_TopoIIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II | Back alignment and domain information |
|---|
| >PRK05560 DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
| >TIGR01063 gyrA DNA gyrase, A subunit | Back alignment and domain information |
|---|
| >PRK09631 DNA topoisomerase IV subunit A; Provisional | Back alignment and domain information |
|---|
| >PRK12758 DNA topoisomerase IV subunit A; Provisional | Back alignment and domain information |
|---|
| >PRK09630 DNA topoisomerase IV subunit A; Provisional | Back alignment and domain information |
|---|
| >PF00817 IMS: impB/mucB/samB family; InterPro: IPR001126 In Escherichia coli, UV and many chemicals appear to cause mutagenesis by a process of translesion synthesis that requires DNA polymerase III and the SOS-regulated proteins UmuD, UmuC and RecA | Back alignment and domain information |
|---|
| >cd03481 TopoIIA_Trans_ScTopoIIA TopoIIA_Trans_ScTopoIIA: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topo IIA | Back alignment and domain information |
|---|
| >PF00204 DNA_gyraseB: DNA gyrase B; InterPro: IPR013506 DNA topoisomerases regulate the number of topological links between two DNA strands (i | Back alignment and domain information |
|---|
| >cd00822 TopoII_Trans_DNA_gyrase TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E | Back alignment and domain information |
|---|
| >COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG2093|consensus | Back alignment and domain information |
|---|
| >PRK00095 mutL DNA mismatch repair protein; Reviewed | Back alignment and domain information |
|---|
| >TIGR01052 top6b DNA topoisomerase VI, B subunit | Back alignment and domain information |
|---|
| >PRK04184 DNA topoisomerase VI subunit B; Validated | Back alignment and domain information |
|---|
| >KOG0966|consensus | Back alignment and domain information |
|---|
| >PRK14867 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1 | Back alignment and domain information |
|---|
| >TIGR00585 mutl DNA mismatch repair protein MutL | Back alignment and domain information |
|---|
| >KOG3226|consensus | Back alignment and domain information |
|---|
| >smart00292 BRCT breast cancer carboxy-terminal domain | Back alignment and domain information |
|---|
| >PF11799 IMS_C: impB/mucB/samB family C-terminal domain; InterPro: IPR017961 This entry represents the little finger domain found in Y-family (lesion bypass) DNA polymerases | Back alignment and domain information |
|---|
| >PRK14868 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain | Back alignment and domain information |
|---|
| >PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase | Back alignment and domain information |
|---|
| >PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A | Back alignment and domain information |
|---|
| >PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >PRK14083 HSP90 family protein; Provisional | Back alignment and domain information |
|---|
| >PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases [] | Back alignment and domain information |
|---|
| >PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B | Back alignment and domain information |
|---|
| >PRK05218 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PLN03122 Poly [ADP-ribose] polymerase; Provisional | Back alignment and domain information |
|---|
| >KOG2481|consensus | Back alignment and domain information |
|---|
| >cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins | Back alignment and domain information |
|---|
| >PLN03123 poly [ADP-ribose] polymerase; Provisional | Back alignment and domain information |
|---|
| >COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK04301 radA DNA repair and recombination protein RadA; Validated | Back alignment and domain information |
|---|
| >PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional | Back alignment and domain information |
|---|
| >COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1929|consensus | Back alignment and domain information |
|---|
| >cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >smart00387 HATPase_c Histidine kinase-like ATPases | Back alignment and domain information |
|---|
| >PTZ00130 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >TIGR02236 recomb_radA DNA repair and recombination protein RadA | Back alignment and domain information |
|---|
| >TIGR01925 spIIAB anti-sigma F factor | Back alignment and domain information |
|---|
| >TIGR01386 cztS_silS_copS heavy metal sensor kinase | Back alignment and domain information |
|---|
| >PRK04069 serine-protein kinase RsbW; Provisional | Back alignment and domain information |
|---|
| >PF13581 HATPase_c_2: Histidine kinase-like ATPase domain | Back alignment and domain information |
|---|
| >KOG1978|consensus | Back alignment and domain information |
|---|
| >PRK10604 sensor protein RstB; Provisional | Back alignment and domain information |
|---|
| >PRK15053 dpiB sensor histidine kinase DpiB; Provisional | Back alignment and domain information |
|---|
| >COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A | Back alignment and domain information |
|---|
| >TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL | Back alignment and domain information |
|---|
| >cd01701 PolY_Rev1 DNA polymerase Rev1 | Back alignment and domain information |
|---|
| >PRK03660 anti-sigma F factor; Provisional | Back alignment and domain information |
|---|
| >TIGR01924 rsbW_low_gc serine-protein kinase RsbW | Back alignment and domain information |
|---|
| >COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1979|consensus | Back alignment and domain information |
|---|
| >PRK11006 phoR phosphate regulon sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK10549 signal transduction histidine-protein kinase BaeS; Provisional | Back alignment and domain information |
|---|
| >PRK11086 sensory histidine kinase DcuS; Provisional | Back alignment and domain information |
|---|
| >COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10364 sensor protein ZraS; Provisional | Back alignment and domain information |
|---|
| >PF13438 DUF4113: Domain of unknown function (DUF4113) | Back alignment and domain information |
|---|
| >COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3548|consensus | Back alignment and domain information |
|---|
| >PRK09303 adaptive-response sensory kinase; Validated | Back alignment and domain information |
|---|
| >COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria [] | Back alignment and domain information |
|---|
| >TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase | Back alignment and domain information |
|---|
| >PRK09835 sensor kinase CusS; Provisional | Back alignment and domain information |
|---|
| >PRK10755 sensor protein BasS/PmrB; Provisional | Back alignment and domain information |
|---|
| >KOG1929|consensus | Back alignment and domain information |
|---|
| >PRK10337 sensor protein QseC; Provisional | Back alignment and domain information |
|---|
| >PRK11100 sensory histidine kinase CreC; Provisional | Back alignment and domain information |
|---|
| >TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR | Back alignment and domain information |
|---|
| >TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase | Back alignment and domain information |
|---|
| >PRK11073 glnL nitrogen regulation protein NR(II); Provisional | Back alignment and domain information |
|---|
| >PRK11360 sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
|---|
| >PRK09467 envZ osmolarity sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK10815 sensor protein PhoQ; Provisional | Back alignment and domain information |
|---|
| >PRK15347 two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
| >PRK09470 cpxA two-component sensor protein; Provisional | Back alignment and domain information |
|---|
| >COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK06063 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional | Back alignment and domain information |
|---|
| >PRK13837 two-component VirA-like sensor kinase; Provisional | Back alignment and domain information |
|---|
| >COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11466 hybrid sensory histidine kinase TorS; Provisional | Back alignment and domain information |
|---|
| >PRK10490 sensor protein KdpD; Provisional | Back alignment and domain information |
|---|
| >KOG3524|consensus | Back alignment and domain information |
|---|
| >PRK12766 50S ribosomal protein L32e; Provisional | Back alignment and domain information |
|---|
| >PRK07956 ligA NAD-dependent DNA ligase LigA; Validated | Back alignment and domain information |
|---|
| >KOG1977|consensus | Back alignment and domain information |
|---|
| >PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional | Back alignment and domain information |
|---|
| >KOG0966|consensus | Back alignment and domain information |
|---|
| >KOG2043|consensus | Back alignment and domain information |
|---|
| >PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional | Back alignment and domain information |
|---|
| >PF08827 DUF1805: Domain of unknown function (DUF1805); InterPro: IPR014931 This protein is found in bacteria and archaea and has an N-terminal tetramerisation region that is composed of beta sheets | Back alignment and domain information |
|---|
| >COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11644 sensory histidine kinase UhpB; Provisional | Back alignment and domain information |
|---|
| >PRK10600 nitrate/nitrite sensor protein NarX; Provisional | Back alignment and domain information |
|---|
| >PRK13560 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
| >COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
| >TIGR00575 dnlj DNA ligase, NAD-dependent | Back alignment and domain information |
|---|
| >PRK13557 histidine kinase; Provisional | Back alignment and domain information |
|---|
| >PRK11091 aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
| >PRK06195 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
| >COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2307 | ||||
| 4gfh_F | 1099 | Topoisomerase Ii-Dna-Amppnp Complex Length = 1099 | 1e-154 | ||
| 4gfh_F | 1099 | Topoisomerase Ii-Dna-Amppnp Complex Length = 1099 | 1e-22 | ||
| 4gfh_F | 1099 | Topoisomerase Ii-Dna-Amppnp Complex Length = 1099 | 5e-07 | ||
| 4gfh_A | 1103 | Topoisomerase Ii-Dna-Amppnp Complex Length = 1103 | 1e-154 | ||
| 4gfh_A | 1103 | Topoisomerase Ii-Dna-Amppnp Complex Length = 1103 | 1e-22 | ||
| 4gfh_A | 1103 | Topoisomerase Ii-Dna-Amppnp Complex Length = 1103 | 5e-07 | ||
| 1zxm_A | 400 | Human Topo Iia Atpase/amp-pnp Length = 400 | 1e-138 | ||
| 1qzr_A | 418 | Crystal Structure Of The Atpase Region Of Saccharom | 3e-97 | ||
| 1pvg_A | 418 | Crystal Structure Of The Atpase Region Of Saccharom | 1e-92 | ||
| 3qx3_A | 803 | Human Topoisomerase Iibeta In Complex With Dna And | 3e-77 | ||
| 3qx3_A | 803 | Human Topoisomerase Iibeta In Complex With Dna And | 2e-32 | ||
| 3qx3_A | 803 | Human Topoisomerase Iibeta In Complex With Dna And | 6e-11 | ||
| 4fm9_A | 763 | Human Topoisomerase Ii Alpha Bound To Dna Length = | 1e-76 | ||
| 4fm9_A | 763 | Human Topoisomerase Ii Alpha Bound To Dna Length = | 7e-33 | ||
| 4fm9_A | 763 | Human Topoisomerase Ii Alpha Bound To Dna Length = | 1e-07 | ||
| 3gqc_A | 504 | Structure Of Human Rev1-Dna-Dntp Ternary Complex Le | 1e-63 | ||
| 3l4j_A | 722 | Topoisomerase Ii-Dna Cleavage Complex, Apo Length = | 4e-55 | ||
| 3l4k_A | 722 | Topoisomerase Ii-Dna Cleavage Complex, Apo Length = | 1e-22 | ||
| 3l4k_A | 722 | Topoisomerase Ii-Dna Cleavage Complex, Apo Length = | 7e-07 | ||
| 2rgr_A | 759 | Topoisomerase Iia Bound To G-segment Dna Length = 7 | 5e-54 | ||
| 2rgr_A | 759 | Topoisomerase Iia Bound To G-segment Dna Length = 7 | 1e-22 | ||
| 2rgr_A | 759 | Topoisomerase Iia Bound To G-segment Dna Length = 7 | 6e-07 | ||
| 1bgw_A | 793 | Topoisomerase Residues 410-1202 Length = 793 | 6e-54 | ||
| 1bgw_A | 793 | Topoisomerase Residues 410-1202 Length = 793 | 2e-22 | ||
| 1bgw_A | 793 | Topoisomerase Residues 410-1202 Length = 793 | 6e-07 | ||
| 2aq4_A | 434 | Ternary Complex Of The Catalytic Core Of Rev1 With | 5e-26 | ||
| 2ebw_A | 97 | Solution Structure Of The Brct Domain From Human Dn | 2e-25 | ||
| 2xco_A | 726 | The 3.1a Crystal Structure Of The Catalytic Core (B | 2e-15 | ||
| 2xcr_B | 726 | The 3.5a Crystal Structure Of The Catalytic Core (B | 2e-15 | ||
| 3foe_C | 268 | Structural Insight Into The Quinolone-Dna Cleavage | 3e-13 | ||
| 2xcs_B | 692 | The 2.1a Crystal Structure Of S. Aureus Gyrase Comp | 5e-13 | ||
| 4f4w_A | 361 | Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #1 Le | 3e-12 | ||
| 1t94_A | 459 | Crystal Structure Of The Catalytic Core Of Human Dn | 4e-12 | ||
| 3pzp_A | 517 | Human Dna Polymerase Kappa Extending Opposite A Cis | 6e-12 | ||
| 2oh2_A | 508 | Ternary Complex Of Human Dna Polymerase Length = 50 | 6e-12 | ||
| 3nuh_B | 420 | A Domain Insertion In E. Coli Gyrb Adopts A Novel F | 1e-11 | ||
| 4f4y_A | 362 | Y-family Dna Polymerase Chimera Dbh-dpo4-dbh Length | 2e-11 | ||
| 3mr6_A | 435 | Human Dna Polymerase Eta - Dna Ternary Complex With | 2e-11 | ||
| 4dez_A | 356 | Structure Of Msdpo4 Length = 356 | 2e-11 | ||
| 3mr2_A | 435 | Human Dna Polymerase Eta In Complex With Normal Dna | 2e-11 | ||
| 4f50_A | 361 | Y-family Dna Polymerase Chimera Dbh-dbh-dpo4 Length | 3e-11 | ||
| 4id3_A | 92 | Crystal Structure Of The Brct Domain Of S. Cerevisi | 1e-10 | ||
| 2m2i_A | 94 | Nmr Solution Structure Of Brct Domain Of Yeast Rev1 | 1e-10 | ||
| 3bq0_A | 354 | Pre-insertion Binary Complex Of Dbh Dna Polymerase | 4e-10 | ||
| 1k1q_A | 354 | Crystal Structure Of A Dinb Family Error Prone Dna | 5e-10 | ||
| 2xkk_A | 767 | Crystal Structure Of Moxifloxacin, Dna, And A. Baum | 1e-09 | ||
| 2xkj_E | 767 | Crystal Structure Of Catalytic Core Of A. Baumannii | 2e-09 | ||
| 1im4_A | 221 | Crystal Structure Of A Dinb Homolog (Dbh) Lesion By | 8e-09 | ||
| 2zjt_A | 247 | Crystal Structure Of Dna Gyrase B' Domain Sheds Lig | 1e-08 | ||
| 3ig0_A | 242 | Crystal Structure Of The Second Part Of The Mycobac | 1e-08 | ||
| 3h40_A | 389 | Binary Complex Of Human Dna Polymerase Iota With Te | 1e-08 | ||
| 2dpi_A | 420 | Ternary Complex Of Hpoli With Dna And Dctp Length = | 1e-08 | ||
| 1t3n_A | 388 | Structure Of The Catalytic Core Of Dna Polymerase I | 1e-08 | ||
| 2alz_A | 390 | Ternary Complex Of Hpoli With Dna And Dctp Length = | 1e-08 | ||
| 4f4z_B | 361 | Y-family Dna Polymerase Chimera Dpo4-dpo4-dbh Lengt | 6e-08 | ||
| 1jx4_A | 352 | Crystal Structure Of A Y-Family Dna Polymerase In A | 7e-08 | ||
| 3gv5_B | 420 | Human Dna Polymerase Iota In Complex With T Templat | 7e-08 | ||
| 2ago_A | 341 | Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide | 1e-07 | ||
| 3pvx_A | 347 | Binary Complex Of Aflatoxin B1 Adduct Modified Dna | 1e-07 | ||
| 3gii_A | 341 | Dpo4 Extension Ternary Complex With Disordered A Op | 1e-07 | ||
| 2uvv_A | 358 | Crystal Structures Of Mutant Dpo4 Dna Polymerases W | 1e-07 | ||
| 2imw_P | 348 | Mechanism Of Template-Independent Nucleotide Incorp | 1e-07 | ||
| 3pr4_A | 341 | Dpo4 Y12a Mutant Incorporating Dadp Opposite Templa | 1e-07 | ||
| 3v6k_A | 347 | Replication Of N2,3-Ethenoguanine By Dna Polymerase | 1e-07 | ||
| 2w9b_A | 358 | Binary Complex Of Dpo4 Bound To N2,N2-Dimethyl- Deo | 1e-07 | ||
| 2rdi_A | 342 | Snapshots Of A Y-family Dna Polymerase In Replicati | 1e-07 | ||
| 3qz7_A | 360 | T-3 Ternary Complex Of Dpo4 Length = 360 | 1e-07 | ||
| 2bq3_A | 358 | Dna Adduct Bypass Polymerization By Sulfolobus Solf | 1e-07 | ||
| 1jxl_A | 352 | Crystal Structure Of A Y-Family Dna Polymerase In A | 1e-07 | ||
| 4gc7_A | 359 | Crystal Structure Of Dpo4 In Complex With S-mc-dadp | 1e-07 | ||
| 3v6h_A | 348 | Replication Of N2,3-Ethenoguanine By Dna Polymerase | 1e-07 | ||
| 2asd_A | 360 | Oxog-Modified Insertion Ternary Complex Length = 36 | 1e-07 | ||
| 2uvr_A | 358 | Crystal Structures Of Mutant Dpo4 Dna Polymerases W | 1e-07 | ||
| 3vu7_H | 124 | Crystal Structure Of Rev1-rev7-rev3 Ternary Complex | 5e-06 | ||
| 2lsk_A | 95 | C-Terminal Domain Of Human Rev1 In Complex With Dna | 5e-06 | ||
| 2lsg_A | 104 | Solution Structure Of The Mouse Rev1 C-Terminal Dom | 8e-06 | ||
| 2lsj_A | 119 | Solution Structure Of The Mouse Rev1 Ctd In Complex | 1e-05 | ||
| 4fjo_A | 97 | Structure Of The Rev1 Ctd-Rev37-Pol Kappa Rir Compl | 2e-05 | ||
| 4hz5_A | 216 | Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To | 8e-05 | ||
| 4em7_A | 226 | Crystal Structure Of A Topoisomerase Atp Inhibitor | 2e-04 |
| >pdb|1ZXM|A Chain A, Human Topo Iia Atpase/amp-pnp Length = 400 | Back alignment and structure |
| >pdb|1QZR|A Chain A, Crystal Structure Of The Atpase Region Of Saccharomyces Cerevisiae Topoisomerase Ii Bound To Icrf-187 (Dexrazoxane) Length = 418 | Back alignment and structure |
| >pdb|1PVG|A Chain A, Crystal Structure Of The Atpase Region Of Saccharomyces Cerevisiae Topoisomerase Ii Length = 418 | Back alignment and structure |
| >pdb|3QX3|A Chain A, Human Topoisomerase Iibeta In Complex With Dna And Etoposide Length = 803 | Back alignment and structure |
| >pdb|3QX3|A Chain A, Human Topoisomerase Iibeta In Complex With Dna And Etoposide Length = 803 | Back alignment and structure |
| >pdb|3QX3|A Chain A, Human Topoisomerase Iibeta In Complex With Dna And Etoposide Length = 803 | Back alignment and structure |
| >pdb|4FM9|A Chain A, Human Topoisomerase Ii Alpha Bound To Dna Length = 763 | Back alignment and structure |
| >pdb|4FM9|A Chain A, Human Topoisomerase Ii Alpha Bound To Dna Length = 763 | Back alignment and structure |
| >pdb|4FM9|A Chain A, Human Topoisomerase Ii Alpha Bound To Dna Length = 763 | Back alignment and structure |
| >pdb|3GQC|A Chain A, Structure Of Human Rev1-Dna-Dntp Ternary Complex Length = 504 | Back alignment and structure |
| >pdb|3L4J|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Apo Length = 722 | Back alignment and structure |
| >pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-segment Dna Length = 759 | Back alignment and structure |
| >pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-segment Dna Length = 759 | Back alignment and structure |
| >pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-segment Dna Length = 759 | Back alignment and structure |
| >pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202 Length = 793 | Back alignment and structure |
| >pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202 Length = 793 | Back alignment and structure |
| >pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202 Length = 793 | Back alignment and structure |
| >pdb|2AQ4|A Chain A, Ternary Complex Of The Catalytic Core Of Rev1 With Dna And Dctp. Length = 434 | Back alignment and structure |
| >pdb|2EBW|A Chain A, Solution Structure Of The Brct Domain From Human Dna Repair Protein Rev1 Length = 97 | Back alignment and structure |
| >pdb|2XCO|A Chain A, The 3.1a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Length = 726 | Back alignment and structure |
| >pdb|2XCR|B Chain B, The 3.5a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Complexed With Gsk299423 And Dna Length = 726 | Back alignment and structure |
| >pdb|3FOE|C Chain C, Structural Insight Into The Quinolone-Dna Cleavage Complex Of Type Iia Topoisomerases Length = 268 | Back alignment and structure |
| >pdb|2XCS|B Chain B, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex With Gsk299423 And Dna Length = 692 | Back alignment and structure |
| >pdb|4F4W|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #1 Length = 361 | Back alignment and structure |
| >pdb|1T94|A Chain A, Crystal Structure Of The Catalytic Core Of Human Dna Polymerase Kappa Length = 459 | Back alignment and structure |
| >pdb|3PZP|A Chain A, Human Dna Polymerase Kappa Extending Opposite A Cis-Syn Thymine Dimer Length = 517 | Back alignment and structure |
| >pdb|2OH2|A Chain A, Ternary Complex Of Human Dna Polymerase Length = 508 | Back alignment and structure |
| >pdb|3NUH|B Chain B, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold That Plays A Critical Role In Gyrase Function Length = 420 | Back alignment and structure |
| >pdb|4F4Y|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dbh Length = 362 | Back alignment and structure |
| >pdb|3MR6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd 2bp Upstream Of The Active Site (Tt4) Length = 435 | Back alignment and structure |
| >pdb|4DEZ|A Chain A, Structure Of Msdpo4 Length = 356 | Back alignment and structure |
| >pdb|3MR2|A Chain A, Human Dna Polymerase Eta In Complex With Normal Dna And Incoming Nucleotide (Nrm) Length = 435 | Back alignment and structure |
| >pdb|4F50|A Chain A, Y-family Dna Polymerase Chimera Dbh-dbh-dpo4 Length = 361 | Back alignment and structure |
| >pdb|4ID3|A Chain A, Crystal Structure Of The Brct Domain Of S. Cerevisiae Rev1 Length = 92 | Back alignment and structure |
| >pdb|2M2I|A Chain A, Nmr Solution Structure Of Brct Domain Of Yeast Rev1 Length = 94 | Back alignment and structure |
| >pdb|3BQ0|A Chain A, Pre-insertion Binary Complex Of Dbh Dna Polymerase Length = 354 | Back alignment and structure |
| >pdb|1K1Q|A Chain A, Crystal Structure Of A Dinb Family Error Prone Dna Polymerase From Sulfolobus Solfataricus Length = 354 | Back alignment and structure |
| >pdb|2XKK|A Chain A, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii Topo Iv (Pare-Parc Fusion Truncate) Length = 767 | Back alignment and structure |
| >pdb|2XKJ|E Chain E, Crystal Structure Of Catalytic Core Of A. Baumannii Topo Iv (Pare-Parc Fusion Truncate) Length = 767 | Back alignment and structure |
| >pdb|1IM4|A Chain A, Crystal Structure Of A Dinb Homolog (Dbh) Lesion Bypass Dna Polymerase Catalytic Fragment From Sulfolobus Solfataricus Length = 221 | Back alignment and structure |
| >pdb|2ZJT|A Chain A, Crystal Structure Of Dna Gyrase B' Domain Sheds Lights On The Mechanism For T-Segment Navigation Length = 247 | Back alignment and structure |
| >pdb|3IG0|A Chain A, Crystal Structure Of The Second Part Of The Mycobacterium Tuberculosis Dna Gyrase Reaction Core: The Toprim Domain At 2.1 A Resolution Length = 242 | Back alignment and structure |
| >pdb|3H40|A Chain A, Binary Complex Of Human Dna Polymerase Iota With Template UT Length = 389 | Back alignment and structure |
| >pdb|2DPI|A Chain A, Ternary Complex Of Hpoli With Dna And Dctp Length = 420 | Back alignment and structure |
| >pdb|1T3N|A Chain A, Structure Of The Catalytic Core Of Dna Polymerase Iota In Complex With Dna And Dttp Length = 388 | Back alignment and structure |
| >pdb|2ALZ|A Chain A, Ternary Complex Of Hpoli With Dna And Dctp Length = 390 | Back alignment and structure |
| >pdb|4F4Z|B Chain B, Y-family Dna Polymerase Chimera Dpo4-dpo4-dbh Length = 361 | Back alignment and structure |
| >pdb|1JX4|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A Ternary Complex With Dna Substrates And An Incoming Nucleotide Length = 352 | Back alignment and structure |
| >pdb|3GV5|B Chain B, Human Dna Polymerase Iota In Complex With T Template Dna And Incoming Ddadp Length = 420 | Back alignment and structure |
| >pdb|2AGO|A Chain A, Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide Selection And Pyrophosphorolysis Length = 341 | Back alignment and structure |
| >pdb|3PVX|A Chain A, Binary Complex Of Aflatoxin B1 Adduct Modified Dna (Afb1-Fapy) With Dna Polymerase Iv Length = 347 | Back alignment and structure |
| >pdb|3GII|A Chain A, Dpo4 Extension Ternary Complex With Disordered A Opposite An Oxog In Anti Conformation Length = 341 | Back alignment and structure |
| >pdb|2UVV|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8- Oxog Containing Dna Template-Primer Constructs Length = 358 | Back alignment and structure |
| >pdb|2IMW|P Chain P, Mechanism Of Template-Independent Nucleotide Incorporation Catalyzed By A Template-Dependent Dna Polymerase Length = 348 | Back alignment and structure |
| >pdb|3PR4|A Chain A, Dpo4 Y12a Mutant Incorporating Dadp Opposite Template Dt Length = 341 | Back alignment and structure |
| >pdb|3V6K|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases Length = 347 | Back alignment and structure |
| >pdb|2W9B|A Chain A, Binary Complex Of Dpo4 Bound To N2,N2-Dimethyl- Deoxyguanosine Modified Dna Length = 358 | Back alignment and structure |
| >pdb|2RDI|A Chain A, Snapshots Of A Y-family Dna Polymerase In Replication: Dpo4 In Apo And Binary/ternary Complex Forms Length = 342 | Back alignment and structure |
| >pdb|3QZ7|A Chain A, T-3 Ternary Complex Of Dpo4 Length = 360 | Back alignment and structure |
| >pdb|2BQ3|A Chain A, Dna Adduct Bypass Polymerization By Sulfolobus Solfataricus Dpo4. Analysis And Crystal Structures Of Multiple Base- Pair Substitution And Frameshift Products With The Adduct 1,N2-Ethenoguanine Length = 358 | Back alignment and structure |
| >pdb|1JXL|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A Ternary Complex With Dna Substrates And An Incoming Nucleotide Length = 352 | Back alignment and structure |
| >pdb|4GC7|A Chain A, Crystal Structure Of Dpo4 In Complex With S-mc-dadp Opposite Dt Length = 359 | Back alignment and structure |
| >pdb|3V6H|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases Length = 348 | Back alignment and structure |
| >pdb|2ASD|A Chain A, Oxog-Modified Insertion Ternary Complex Length = 360 | Back alignment and structure |
| >pdb|2UVR|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8- Oxog Containing Dna Template-Primer Constructs Length = 358 | Back alignment and structure |
| >pdb|3VU7|H Chain H, Crystal Structure Of Rev1-rev7-rev3 Ternary Complex Length = 124 | Back alignment and structure |
| >pdb|2LSK|A Chain A, C-Terminal Domain Of Human Rev1 In Complex With Dna-Polymerase H (Eta) Length = 95 | Back alignment and structure |
| >pdb|2LSG|A Chain A, Solution Structure Of The Mouse Rev1 C-Terminal Domain Length = 104 | Back alignment and structure |
| >pdb|2LSJ|A Chain A, Solution Structure Of The Mouse Rev1 Ctd In Complex With The Rev1- Interacting Region (Rir)of Pol Kappa Length = 119 | Back alignment and structure |
| >pdb|4FJO|A Chain A, Structure Of The Rev1 Ctd-Rev37-Pol Kappa Rir Complex Length = 97 | Back alignment and structure |
| >pdb|4HZ5|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity Length = 216 | Back alignment and structure |
| >pdb|4EM7|A Chain A, Crystal Structure Of A Topoisomerase Atp Inhibitor Length = 226 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Length = 418 | Back alignment and structure |
|---|
Score = 533 bits (1375), Expect = e-172
Identities = 199/446 (44%), Positives = 261/446 (58%), Gaps = 75/446 (16%)
Query: 24 KTPANKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPG 83
+S YQK SQLEHIL RPDTYIGSVE + W+ + ET+ M + +T VPG
Sbjct: 5 TMSTEPVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPG 64
Query: 84 LYKIFDEILVNACDNKQRDPKMNCIKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTM 143
L+KIFDEILVNA DNK RDP M I + ++ E +TI V N+GKGIP+ H E +++P M
Sbjct: 65 LFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEM 124
Query: 144 IFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVTGGRNGYGAKLCNIFSS 203
IFGHLLTSSNY+D+E KVTG GRNGYGAKLCNIFS+
Sbjct: 125 IFGHLLTSSNYDDDEKKVTG-------------------------GRNGYGAKLCNIFST 159
Query: 204 KFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSGSKD-DFTKITFTPDLTKFKMTSLDKD 262
+F++ET+ + + Q W++NMS P+I S K +TK+TF PDLT+F M LD D
Sbjct: 160 EFILETADLNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDND 219
Query: 263 MVDLITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYT------------DRQDEDG 310
++ ++ RR YD S +D+ V+LNG+ L ++NF++YV+LY +
Sbjct: 220 ILGVMRRRVYDINGSVRDINVYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKS 279
Query: 311 DPVKIIYENVNPRWEVAIAPSDRGFQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKK 370
D I+YE +N RWEVA A SD FQQ+SFVNSIATT GG HV+ + D IVK+I E++KK
Sbjct: 280 DIPTILYERINNRWEVAFAVSDISFQQISFVNSIATTMGGTHVNYITDQIVKKISEILKK 339
Query: 371 KNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALKPFQVKNHIWIFINCLI 430
K K ++K FQ+KN+++IFINCLI
Sbjct: 340 KKK-------------------------------------KSVKSFQIKNNMFIFINCLI 362
Query: 431 VNPTFDSQTKENMTLQKGSFGSTCVP 456
NP F SQTKE +T + FGS C
Sbjct: 363 ENPAFTSQTKEQLTTRVKDFGSRCEI 388
|
| >1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Length = 400 | Back alignment and structure |
|---|
| >3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens} Length = 504 | Back alignment and structure |
|---|
| >3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens} Length = 504 | Back alignment and structure |
|---|
| >3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens} Length = 504 | Back alignment and structure |
|---|
| >3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* Length = 757 | Back alignment and structure |
|---|
| >3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* Length = 757 | Back alignment and structure |
|---|
| >3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* Length = 757 | Back alignment and structure |
|---|
| >3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} Length = 803 | Back alignment and structure |
|---|
| >3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} Length = 803 | Back alignment and structure |
|---|
| >3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} Length = 803 | Back alignment and structure |
|---|
| >2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A* Length = 434 | Back alignment and structure |
|---|
| >2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A* Length = 434 | Back alignment and structure |
|---|
| >2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A* Length = 434 | Back alignment and structure |
|---|
| >3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 3h4d_A* 3h4b_A* ... Length = 420 | Back alignment and structure |
|---|
| >3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 3h4d_A* 3h4b_A* ... Length = 420 | Back alignment and structure |
|---|
| >4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ... Length = 435 | Back alignment and structure |
|---|
| >4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ... Length = 435 | Back alignment and structure |
|---|
| >3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A Length = 354 | Back alignment and structure |
|---|
| >3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A Length = 354 | Back alignment and structure |
|---|
| >1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ... Length = 352 | Back alignment and structure |
|---|
| >1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ... Length = 352 | Back alignment and structure |
|---|
| >1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A* Length = 459 | Back alignment and structure |
|---|
| >1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A* Length = 459 | Back alignment and structure |
|---|
| >3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens} Length = 517 | Back alignment and structure |
|---|
| >3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens} Length = 517 | Back alignment and structure |
|---|
| >2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
| >1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7 Length = 221 | Back alignment and structure |
|---|
| >1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7 Length = 221 | Back alignment and structure |
|---|
| >3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A* Length = 520 | Back alignment and structure |
|---|
| >1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 Length = 132 | Back alignment and structure |
|---|
| >3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli} Length = 420 | Back alignment and structure |
|---|
| >3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C* Length = 268 | Back alignment and structure |
|---|
| >2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129 | Back alignment and structure |
|---|
| >3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A* Length = 242 | Back alignment and structure |
|---|
| >4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A* Length = 97 | Back alignment and structure |
|---|
| >3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} PDB: 3pc8_A* 3qvg_B* 1cdz_A Length = 104 | Back alignment and structure |
|---|
| >3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A* Length = 124 | Back alignment and structure |
|---|
| >3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Length = 263 | Back alignment and structure |
|---|
| >3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Length = 263 | Back alignment and structure |
|---|
| >2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* Length = 767 | Back alignment and structure |
|---|
| >2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* Length = 767 | Back alignment and structure |
|---|
| >2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 109 | Back alignment and structure |
|---|
| >3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
| >1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} Length = 264 | Back alignment and structure |
|---|
| >2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens} Length = 106 | Back alignment and structure |
|---|
| >2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A* Length = 692 | Back alignment and structure |
|---|
| >2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A* Length = 692 | Back alignment and structure |
|---|
| >3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Length = 298 | Back alignment and structure |
|---|
| >3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Length = 298 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A* Length = 107 | Back alignment and structure |
|---|
| >1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Length = 229 | Back alignment and structure |
|---|
| >1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Length = 229 | Back alignment and structure |
|---|
| >3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Length = 199 | Back alignment and structure |
|---|
| >3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Length = 199 | Back alignment and structure |
|---|
| >1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Length = 390 | Back alignment and structure |
|---|
| >2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Length = 210 | Back alignment and structure |
|---|
| >1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Length = 214 | Back alignment and structure |
|---|
| >1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Length = 214 | Back alignment and structure |
|---|
| >4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Length = 226 | Back alignment and structure |
|---|
| >3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Length = 219 | Back alignment and structure |
|---|
| >1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Length = 390 | Back alignment and structure |
|---|
| >3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* Length = 220 | Back alignment and structure |
|---|
| >3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Length = 201 | Back alignment and structure |
|---|
| >2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
| >2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Length = 209 | Back alignment and structure |
|---|
| >2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Length = 209 | Back alignment and structure |
|---|
| >3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Length = 408 | Back alignment and structure |
|---|
| >4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Length = 220 | Back alignment and structure |
|---|
| >3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} PDB: 3ifz_A* Length = 470 | Back alignment and structure |
|---|
| >1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli} Length = 716 | Back alignment and structure |
|---|
| >1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1 Length = 115 | Back alignment and structure |
|---|
| >3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A Length = 500 | Back alignment and structure |
|---|
| >3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Length = 235 | Back alignment and structure |
|---|
| >2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus} Length = 514 | Back alignment and structure |
|---|
| >2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A* Length = 496 | Back alignment and structure |
|---|
| >3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A* Length = 88 | Back alignment and structure |
|---|
| >3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Length = 372 | Back alignment and structure |
|---|
| >1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Length = 391 | Back alignment and structure |
|---|
| >2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A* Length = 241 | Back alignment and structure |
|---|
| >3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Length = 442 | Back alignment and structure |
|---|
| >3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Length = 369 | Back alignment and structure |
|---|
| >1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B Length = 259 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2307 | |||
| 4gfh_A | 1177 | DNA topoisomerase 2; topoisomerase, protein-DNA co | 100.0 | |
| 3qx3_A | 803 | DNA topoisomerase 2-beta; toprim domain, winged-he | 100.0 | |
| 3l4j_A | 757 | DNA topoisomerase 2; topoisomerase, protein-DNA co | 100.0 | |
| 2xkj_E | 767 | Topoisomerase IV; type IIA topoisomerase; 2.20A {A | 100.0 | |
| 2xcs_B | 692 | DNA gyrase subunit B, DNA gyrase subunit A; isomer | 100.0 | |
| 1pvg_A | 418 | DNA topoisomerase II; GHKL ATPase domain; HET: DNA | 100.0 | |
| 3gqc_A | 504 | DNA repair protein REV1; protein-DNA complex, DNA | 100.0 | |
| 1zxm_A | 400 | TOPO IIA ATPase, DNA topoisomerase II, alpha isozy | 100.0 | |
| 2aq4_A | 434 | DNA repair protein REV1; polymerase, PAD, N-digit, | 100.0 | |
| 3lnu_A | 408 | Topoisomerase IV subunit B; PARE, ATP-binding, nuc | 100.0 | |
| 1ei1_A | 391 | DNA gyrase B, GYRB; ATPase domain, dimer, isomeras | 100.0 | |
| 1s16_A | 390 | Topoisomerase IV subunit B; two-domain protein com | 100.0 | |
| 1jx4_A | 352 | DNA polymerase IV (family Y); protein-DNA complex, | 100.0 | |
| 1kij_A | 390 | DNA gyrase subunit B; topoisomerase, gyrase B-coum | 100.0 | |
| 3bq0_A | 354 | POL IV, DBH, DNA polymerase IV; Y-family, lesion b | 100.0 | |
| 4f4y_A | 362 | POL IV, DNA polymerase IV; Y-family polymerase, tr | 100.0 | |
| 4dez_A | 356 | POL IV 1, DNA polymerase IV 1; Y-family, transfera | 100.0 | |
| 3pzp_A | 517 | DNA polymerase kappa; DNA nucleotidyltransferase, | 100.0 | |
| 3osn_A | 420 | DNA polymerase IOTA; hoogsteen base PAIR, protein- | 100.0 | |
| 4ecq_A | 435 | DNA polymerase ETA; transferase-DNA complex; HET: | 100.0 | |
| 1t94_A | 459 | Polymerase (DNA directed) kappa; replication, DNA | 100.0 | |
| 3mfi_A | 520 | DNA polymerase ETA; DNA damage, DNA repair, DNA re | 100.0 | |
| 3cwv_A | 369 | DNA gyrase, B subunit, truncated; structural genom | 100.0 | |
| 3k9f_C | 268 | DNA topoisomerase 4 subunit B; quinolone, topoisom | 100.0 | |
| 3m4i_A | 242 | DNA gyrase subunit B; GYRB, toprim, type II topois | 100.0 | |
| 3nuh_B | 420 | DNA gyrase subunit B; topoisomerase, supercoiling, | 100.0 | |
| 4duh_A | 220 | DNA gyrase subunit B; structure-based drug design, | 100.0 | |
| 4emv_A | 226 | DNA topoisomerase IV, B subunit; protein-inhibitor | 100.0 | |
| 2inr_A | 514 | DNA topoisomerase 4 subunit A; topoisomerase II fo | 100.0 | |
| 1im4_A | 221 | DBH; DNA polymerase PALM, thumb, fingers, helix-ha | 100.0 | |
| 2nov_A | 496 | DNA topoisomerase 4 subunit A; protein, PARC, TOPO | 100.0 | |
| 3ilw_A | 470 | DNA gyrase subunit A; DNA topology, topoisomerase, | 100.0 | |
| 3lpx_A | 500 | GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-b | 100.0 | |
| 1zvu_A | 716 | Topoisomerase IV subunit A; beta-pinwheel, ATPase, | 100.0 | |
| 3fv5_A | 201 | DNA topoisomerase 4 subunit B; topoisomerase IV B | 100.0 | |
| 3ttz_A | 198 | DNA gyrase subunit B; protein-inhibitor complex, A | 100.0 | |
| 2q2e_B | 621 | Type 2 DNA topoisomerase 6 subunit B; DNA-binding, | 99.94 | |
| 2ebw_A | 97 | DNA repair protein REV1; A/B/A 3 layers, parallel | 99.7 | |
| 4id3_A | 92 | DNA repair protein REV1; BRCT domain, protein bind | 99.68 | |
| 2zbk_B | 530 | Type 2 DNA topoisomerase 6 subunit B; DNA binding | 99.61 | |
| 3pc6_A | 104 | DNA repair protein XRCC1; BRCT domain, protein:pro | 99.51 | |
| 1b63_A | 333 | MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A | 99.5 | |
| 3na3_A | 348 | DNA mismatch repair protein MLH1; MUTL protein hom | 99.49 | |
| 1wf6_A | 132 | Similar to S.pombe -RAD4+/CUT5+product (A40727); B | 99.44 | |
| 3h4l_A | 367 | DNA mismatch repair protein PMS1; ATP binding, DNA | 99.43 | |
| 2d8m_A | 129 | DNA-repair protein XRCC1; parallel beta-sheet, DNA | 99.41 | |
| 3l3e_A | 107 | DNA topoisomerase 2-binding protein 1; BRCT domain | 99.4 | |
| 2cou_A | 109 | ECT2 protein; BRCT domain, RHO GTPase, structural | 99.39 | |
| 3ii6_X | 263 | DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter | 99.38 | |
| 3l46_A | 112 | Protein ECT2; alternative splicing, guanine-nucleo | 99.36 | |
| 2ep8_A | 100 | Pescadillo homolog 1; A/B/A 3 layers, nucleolus, r | 99.32 | |
| 1h7s_A | 365 | PMS1 protein homolog 2; DNA repair, GHL ATPase, mi | 99.29 | |
| 3pa6_A | 107 | Microcephalin; BRCT domain, cell cycle; HET: MSE; | 99.27 | |
| 1mu5_A | 471 | Type II DNA topoisomerase VI subunit B; GHKL ATPas | 99.22 | |
| 1z56_C | 264 | DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA | 99.14 | |
| 3gqc_A | 504 | DNA repair protein REV1; protein-DNA complex, DNA | 99.13 | |
| 3olc_X | 298 | DNA topoisomerase 2-binding protein 1; BRCT domain | 99.11 | |
| 3ii6_X | 263 | DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter | 99.08 | |
| 3pc7_A | 88 | DNA ligase 3; DNA repair, BRCT domain, protein:pro | 99.05 | |
| 3ef0_A | 372 | RNA polymerase II subunit A C-terminal domain phos | 98.96 | |
| 3ef1_A | 442 | RNA polymerase II subunit A C-terminal domain phos | 98.92 | |
| 3ku8_A | 156 | GYRA14, DNA gyrase subunit A; alpha+beta, SH3 doma | 98.84 | |
| 3u3z_A | 199 | Microcephalin; DNA repair, cell cycle regulation, | 98.76 | |
| 2jw5_A | 106 | DNA polymerase lambda; BRCT domain, family X polym | 98.76 | |
| 2coe_A | 120 | Deoxynucleotidyltransferase, terminal variant; BRC | 98.73 | |
| 1kzy_C | 259 | Tumor suppressor P53-binding protein 1; tandem-BRC | 98.67 | |
| 2vxb_A | 241 | DNA repair protein RHP9; BRCT, nucleus, cell cycle | 98.63 | |
| 1z56_C | 264 | DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA | 98.63 | |
| 1l0b_A | 229 | BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu | 98.54 | |
| 1t15_A | 214 | Breast cancer type 1 susceptibility protein; prote | 98.52 | |
| 1unn_C | 115 | POL IV, DNA polymerase IV; beta-clamp, translesion | 98.52 | |
| 1t15_A | 214 | Breast cancer type 1 susceptibility protein; prote | 98.48 | |
| 2nte_A | 210 | BARD-1, BRCA1-associated ring domain protein 1; BR | 98.46 | |
| 1l0b_A | 229 | BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu | 98.41 | |
| 3sqd_A | 219 | PAX-interacting protein 1; tandem BRCT domains, ce | 98.34 | |
| 3al2_A | 235 | DNA topoisomerase 2-binding protein 1; BRCT domain | 98.3 | |
| 3olc_X | 298 | DNA topoisomerase 2-binding protein 1; BRCT domain | 98.29 | |
| 2dun_A | 133 | POL MU, DNA polymerase MU; layers A/B/A, parallel | 98.25 | |
| 2etx_A | 209 | Mediator of DNA damage checkpoint protein 1; tande | 98.23 | |
| 3u3z_A | 199 | Microcephalin; DNA repair, cell cycle regulation, | 98.19 | |
| 2nte_A | 210 | BARD-1, BRCA1-associated ring domain protein 1; BR | 98.13 | |
| 2etx_A | 209 | Mediator of DNA damage checkpoint protein 1; tande | 98.03 | |
| 2wer_A | 220 | ATP-dependent molecular chaperone HSP82; ATPase, A | 97.9 | |
| 2cok_A | 113 | Poly [ADP-ribose] polymerase-1; BRCT domain, DNA r | 97.82 | |
| 2aq4_A | 434 | DNA repair protein REV1; polymerase, PAD, N-digit, | 97.8 | |
| 1l7b_A | 92 | DNA ligase; BRCT, autostructure, structural genomi | 97.78 | |
| 3l41_A | 220 | BRCT-containing protein 1; BRC1, BRCT domain, tand | 97.72 | |
| 2ior_A | 235 | Chaperone protein HTPG; heat shock protein, HSP90; | 97.69 | |
| 3t0h_A | 228 | Heat shock protein HSP 90-alpha; chaperone, ATPase | 97.68 | |
| 3o0i_A | 256 | HSP90AA1 protein; HSP90 heat-shock proteins, chape | 97.62 | |
| 2gqp_A | 236 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 97.58 | |
| 1kzy_C | 259 | Tumor suppressor P53-binding protein 1; tandem-BRC | 97.55 | |
| 2k6g_A | 109 | Replication factor C subunit 1; protein, BRCT, DNA | 97.53 | |
| 3sqd_A | 219 | PAX-interacting protein 1; tandem BRCT domains, ce | 97.51 | |
| 1yc1_A | 264 | HSP 86, heat shock protein HSP 90-alpha; cell-cycl | 97.5 | |
| 3peh_A | 281 | Endoplasmin homolog; structural genomics, structur | 97.43 | |
| 3nmq_A | 239 | Heat shock protein HSP 90-beta; ATPase, chaperone- | 97.4 | |
| 1y4s_A | 559 | Chaperone protein HTPG; HSP90, molecular chaperone | 97.37 | |
| 2ebu_A | 112 | Replication factor C subunit 1; A/B/A 3 layers, pa | 97.35 | |
| 2l42_A | 106 | DNA-binding protein RAP1; BRCT domain, protein bin | 97.29 | |
| 2cg9_A | 677 | ATP-dependent molecular chaperone HSP82; chaperone | 97.25 | |
| 1qy5_A | 269 | Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N | 97.2 | |
| 2ioq_A | 624 | Chaperone protein HTPG; heat shock protein, HSP90; | 97.07 | |
| 3ied_A | 272 | Heat shock protein; HSP90, chaperone, structural g | 96.91 | |
| 1th8_A | 145 | Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s | 96.9 | |
| 2o1u_A | 666 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 96.79 | |
| 1bxd_A | 161 | ENVZ(290-450), protein (osmolarity sensor protein | 96.56 | |
| 1id0_A | 152 | PHOQ histidine kinase; PHOQ/PHOP, signal transduct | 96.54 | |
| 2vxb_A | 241 | DNA repair protein RHP9; BRCT, nucleus, cell cycle | 96.49 | |
| 3a0y_A | 152 | Sensor protein; ATP-LID, kinase, phosphoprotein, t | 96.42 | |
| 3jz3_A | 222 | Sensor protein QSEC; helix-turn-helix, kinase doma | 96.41 | |
| 3al2_A | 235 | DNA topoisomerase 2-binding protein 1; BRCT domain | 96.21 | |
| 2c2a_A | 258 | Sensor histidine kinase; phosphotransfer, PHOQ, se | 96.19 | |
| 3l41_A | 220 | BRCT-containing protein 1; BRC1, BRCT domain, tand | 96.14 | |
| 3sl2_A | 177 | Sensor histidine kinase YYCG; ATP binding, intact | 96.07 | |
| 1gkz_A | 388 | [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] | 95.86 | |
| 1r62_A | 160 | Nitrogen regulation protein NR(II); PII, histidine | 95.82 | |
| 1ysr_A | 150 | Sensor-type histidine kinase PRRB; ATP-binding dom | 95.79 | |
| 4ew8_A | 268 | Sensor protein DIVL; signal transduction, two-comp | 95.55 | |
| 2e0a_A | 394 | Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP | 95.53 | |
| 2btz_A | 394 | Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo | 95.22 | |
| 2q8g_A | 407 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 95.21 | |
| 3d36_A | 244 | Sporulation kinase B; GHKL ATPase, four helix bund | 95.19 | |
| 3a0r_A | 349 | Sensor protein; four helix bundle, PAS fold, kinas | 95.11 | |
| 1y8o_A | 419 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 95.03 | |
| 1b3q_A | 379 | Protein (chemotaxis protein CHEA); histine kinase, | 94.73 | |
| 3ehg_A | 128 | Sensor kinase (YOCF protein); GHL ATPase domain, t | 94.12 | |
| 1i58_A | 189 | Chemotaxis protein CHEA; beta-alpha sandwich, sign | 93.37 | |
| 1wcn_A | 70 | Transcription elongation protein NUSA; RNA-binding | 92.98 | |
| 3ke6_A | 399 | Protein RV1364C/MT1410; anti-sigma factor, anti-si | 92.83 | |
| 3ehh_A | 218 | Sensor kinase (YOCF protein); four-helix bundle, G | 92.59 | |
| 1dgs_A | 667 | DNA ligase; AMP complex, NAD+-dependent; HET: DNA | 92.58 | |
| 4fpp_A | 247 | Phosphotransferase; four helix bundle, bergerat fo | 91.95 | |
| 3zxo_A | 129 | Redox sensor histidine kinase response regulator; | 91.8 | |
| 3zxq_A | 124 | Hypoxia sensor histidine kinase response regulato; | 91.72 | |
| 2owo_A | 671 | DNA ligase; protein-DNA complex, ligase-DNA comple | 91.11 | |
| 2a1j_A | 63 | DNA repair endonuclease XPF; XPF, xeroderma pigmen | 89.1 | |
| 1z00_B | 84 | DNA repair endonuclease XPF; helix-hairpin-helix, | 86.7 | |
| 3bqs_A | 93 | Uncharacterized protein; 10114F, NYSGXRC, PSI-2, s | 86.16 | |
| 3mab_A | 93 | Uncharacterized protein; NYSGXRC, PSI-2, structura | 85.41 | |
| 4fjo_A | 97 | DNA repair protein REV1; translesion synthesis, tr | 85.41 | |
| 1unn_C | 115 | POL IV, DNA polymerase IV; beta-clamp, translesion | 83.99 | |
| 1b22_A | 114 | DNA repair protein RAD51; DNA binding, riken struc | 83.65 | |
| 3vu7_H | 124 | DNA repair protein REV1; DNA replication, transles | 82.4 | |
| 1z3e_B | 73 | DNA-directed RNA polymerase alpha chain; bacterial | 81.37 |
| >4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-194 Score=1952.50 Aligned_cols=817 Identities=49% Similarity=0.837 Sum_probs=704.1
Q ss_pred CCCChhhhhhhcccchhhhcCCCcccccccccceeEEeecccccccccccccccchhHHHHHHHHHHhhhhcccCCCCCe
Q psy7164 28 NKMSVEKIYQKKSQLEHILLRPDTYIGSVEPITETMWLMNRETNHMERREITYVPGLYKIFDEILVNACDNKQRDPKMNC 107 (2307)
Q Consensus 28 ~~~~~~~~~q~l~~lEhVr~RP~mYIGS~~~~~~~~~v~~~~~~~~~~~~i~~~pGL~~i~~EILdNavDe~~r~g~~~~ 107 (2307)
++.+++++||+|++|||||+|||||||||++.+++|||||++.++|++++|+|+||||||||||||||+||+++++.|+.
T Consensus 4 ~~~~~~~~yq~L~~LE~VrkRPgMYIGst~~~~~~~~v~~~~~~~~~~~~vt~v~GL~hl~~EildNsiDea~ag~~~~~ 83 (1177)
T 4gfh_A 4 EPVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKR 83 (1177)
T ss_dssp ---CHHHHSEECCHHHHHHHCGGGTTCCCSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCE
T ss_pred CCCchhhcccccccchhhhcCCCCccccCCCCCcceeeeeccccccccccccccceeeeEeeEEEEChHhHHhhCCCCCe
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999998777999
Q ss_pred EEEEEEccCCeEEEEeCCCCcccccccCCCccccEEEEEeecccccCCCcccccccccccccccccccccCCCCCccccc
Q psy7164 108 IKITVNQETNTISVWNNGKGIPVVEHKDEKMFVPTMIFGHLLTSSNYNDEEDKVTGVVPTMIFGHLLTSSNYNDEEDKVT 187 (2307)
Q Consensus 108 I~V~i~~d~gsIsV~DnGrGIPvd~~~~~~~~~~E~vf~~L~ag~k~~~~~~~~~~~~~~~~~~~~~~g~nfd~~~yk~s 187 (2307)
|+|+|+.+||+|+|+||||||||++||++|+|+||+|||+|||| ||||+++|++|
T Consensus 84 I~V~i~~~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAG-------------------------gKFd~~~ykvS 138 (1177)
T 4gfh_A 84 IDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTS-------------------------SNYDDDEKKVT 138 (1177)
T ss_dssp EEEEEETTTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEE-------------------------SCCCCSSCCCC
T ss_pred EEEEEECCCCEEEEEecCCcccccccCCCCCEeeeeeccccccc-------------------------cCcCCCCCeEe
Confidence 99999987899999999999999999999999999999999999 99999999999
Q ss_pred cCCCcccccccccccceeEEEEEeecccEEEEEEeecCCCcCCCccccCC-CCCCCcEEEEEeCcccccccccCHHHHHH
Q psy7164 188 GGRNGYGAKLCNIFSSKFVVETSCSEYKKSFKQVWKDNMSKVTSPEIKSG-SKDDFTKITFTPDLTKFKMTSLDKDMVDL 266 (2307)
Q Consensus 188 gGlhGVGasvvNAlS~~f~Vev~~~~~gk~y~q~f~~g~~~~~~~~i~~~-~~~~GT~VtF~PD~~iF~~~~f~~d~l~~ 266 (2307)
|||||||+|||||||++|.|+|++.++|+.|.|.|++|++....++++.+ .+.+||+|+|+||++||+++.|+++++..
T Consensus 139 GGLHGVG~svVNALS~~~~vev~~~r~Gk~y~q~f~~g~~~~~~~~i~~~~~~~tGT~V~F~PD~~iF~~~~~~~d~l~~ 218 (1177)
T 4gfh_A 139 GGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGV 218 (1177)
T ss_dssp SCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECCSSCCCEEEEEEECHHHHTCSSCCHHHHHH
T ss_pred ccCCChhhhHHhhcCCceEEEEEEEcCCEEEEEEEECCcccCCCCeeecCCCCCCceEEEEEeCHHhcCCcEeCHHHHHH
Confidence 99999999999999999999998888999999999999998888887765 35799999999999999999999999998
Q ss_pred HHHHHHHhhccCCCcEEEeccccCCccchHHHHHHHhccCCCC------------CCCeEEEEEecCCeeEEEEeecCCC
Q psy7164 267 ITRRAYDAAASTKDVKVFLNGEKLPVKNFQDYVKLYTDRQDED------------GDPVKIIYENVNPRWEVAIAPSDRG 334 (2307)
Q Consensus 267 l~~Rl~dlA~LnpGLkI~lnder~~~~G~~dYV~~~~~~~~~~------------~~~~~ii~e~~~~~~EVAl~~s~~~ 334 (2307)
+.+|++.++...+++.+.++|++.....|++|+..|....+.. .+...+.++..+.+||||++|++.+
T Consensus 219 ~~r~~~~l~~~~~~~~~~~~g~~~~~~~f~~gi~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~eva~~~~d~~ 298 (1177)
T 4gfh_A 219 MRRRVYDINGSVRDINVYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVSDIS 298 (1177)
T ss_dssp HHHHHHHHHHHSSSCEEEESSCBCCCCSHHHHHGGGTTTC-----------------CCSCEEEEEETTEEEEEEECSSS
T ss_pred HHHHHHHhcCCCceEEEEecCCeeEEeeccchhhhhhhhhccceeccccccccccCCCceEEEEeccceEEEeecccCCc
Confidence 8888888887788999999999988777777777765322110 1112356677789999999999877
Q ss_pred ceEEEeeCCccCCCCcchhhHHHHHHHHHHHHHHHHhccccccceeeccccccccccchhhhhcccccccccccccccCC
Q psy7164 335 FQQVSFVNSIATTKGGRHVDAVVDAIVKQIIEVVKKKNKDLGCTIIMLFGNKFNNVKNNKLQMAKTLIDIGVRLGGMALK 414 (2307)
Q Consensus 335 y~~~SFVNnI~T~eGGTHvdgfr~aLtr~i~~~~kkk~k~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~dvreg~~~vk 414 (2307)
++++||||||+|++||||++||++||+++|++|++++++ ..++
T Consensus 299 ~~~~SFvN~I~T~~GGTHv~gfr~altr~in~~~~k~~~-------------------------------------~~~~ 341 (1177)
T 4gfh_A 299 FQQISFVNSIATTMGGTHVNYITDQIVKKISEILKKKKK-------------------------------------KSVK 341 (1177)
T ss_dssp CEEEEEESSCEETTEEHHHHHHHHHHHHHHHHHHHHHSS-------------------------------------SCCC
T ss_pred ceeeeeeeeeecCCCchHHHHHHHHHHHHHHHHhhhhcc-------------------------------------ccCC
Confidence 788999999999999999999999999999999876643 2467
Q ss_pred hHhHhcceEEEEEeecCCCcccchhhhhhhcccccccccc----------------------------------------
Q psy7164 415 PFQVKNHIWIFINCLIVNPTFDSQTKENMTLQKGSFGSTC---------------------------------------- 454 (2307)
Q Consensus 415 ~~dIre~L~~~Vsvki~nP~FegQTKekL~~~~~~~~~k~---------------------------------------- 454 (2307)
++|||+||++||||+|+||+|+||||++|++....+++.+
T Consensus 342 ~~DIregl~avISvki~~PqFegQTK~kL~s~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~~~~k~~~~~k~ 421 (1177)
T 4gfh_A 342 SFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMKTDLATRMFEIADANEENALKKSDGTRKS 421 (1177)
T ss_dssp HHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGGGSSSCCCCCHHHHHHHTTSHHHHHHHHHHTTCC------------C
T ss_pred HHHHhCCceEEEEeeeccCccccchhhhhcCchhcceeeccchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcch
Confidence 8999999999999999999999999999987544433211
Q ss_pred ----ccccccccccCCCCCCCcEEEEEecCccchhcccCcccccccceeeccCCcccchhhccchHHHhhcHHHHHHHHH
Q psy7164 455 ----VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKI 530 (2307)
Q Consensus 455 ----lpKL~Dc~~a~tk~~~~ceLfIvEGDSA~~~a~sGsak~gRD~qaIlPLRGKiLNV~ka~~~ki~~N~EI~~Li~a 530 (2307)
+|||+||+.|+++++++|||||||||||||+|++|+|++|||+|||||||||||||+||+.+||++|+||++||+|
T Consensus 422 ~~~~~~KL~d~~~~~skd~~~~ELfiVEGDSAgGsAk~Grak~~Rd~QAIlPLRGKiLNv~ka~~~kil~N~EI~~ii~a 501 (1177)
T 4gfh_A 422 RITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKI 501 (1177)
T ss_dssp CCCSCTTCBCCTTTTTTTTTTCEEEEEEHHHHHHHHHHHHHHHCSTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHHH
T ss_pred hhccccccccccccCCCCccceEEEEecCCchhhhHhhcccccCcccEEecccCceechhhhhHHHHHhhcHHHHHHHHH
Confidence 6799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCcCCcCCCCCCCCCcEEecccCCCCCCchhHHHHHHHHHhhhhhhc-CCcEEEecCcEEEEEeC---CeEEEE
Q psy7164 531 LGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR-LPFLEEFITPIIKATKA---REELSF 606 (2307)
Q Consensus 531 LGlg~~~~y~~~~d~~~LRYgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~-~G~vy~~~tPL~kv~~g---k~~~~f 606 (2307)
||||+|++| +|+++||||||||||||||||+|||||||||||||||+||+ +||||+|+||||||+.| |+..||
T Consensus 502 lG~g~g~~~---~d~~~LRY~KIiIMTDADvDGsHIrtLLltfF~r~~p~Lie~~G~vyia~pPLykv~~~k~~k~~~~~ 578 (1177)
T 4gfh_A 502 MGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAF 578 (1177)
T ss_dssp TTCCCSSCC---CCGGGSSCSEEEEECCSSHHHHHHHHHHHHHHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEE
T ss_pred hCCCcCccc---CccccCCCCeEEEeecCCCCcchHHHHHHHHHHHhChhhEeeCCEEEEEecceEEEEEecCCcceEEE
Confidence 999999887 48999999999999999999999999999999999999999 89999999999999865 456799
Q ss_pred eChHHHHHHHHHhcCCCccCcEEeccc----------ccC-------------------------c--------------
Q psy7164 607 YSLPEFEEWKEETTNWHTYKIKYYKVV----------YVT-------------------------G-------------- 637 (2307)
Q Consensus 607 ys~~e~~~~~~~~~~~~~~~ikryKGL----------yf~-------------------------~-------------- 637 (2307)
|+++|+++|+++.....+|+||||||| ||. |
T Consensus 579 y~~~e~e~~~~~~~~~~~~~iqryKGLGEm~~~ql~Ett~~~d~~~~~~~~v~~~d~~~~d~~f~~~~~~~RkewI~~~~ 658 (1177)
T 4gfh_A 579 YNMPDYEKWREEESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSKKKADDRKEWLRQYE 658 (1177)
T ss_dssp SSHHHHHHHHHHTGGGSCEEEEEC----CCCHHHHHHHHHTCTTTEEEEECCCTTTHHHHHHHHCGGGHHHHHHHHHHCC
T ss_pred echHHHHHHHHHhcCCCCcceeecccCCcccHHHHHHHHhCcccceEEEEEcccccHHHHHHHHhccchhhHHHHHHhcC
Confidence 999999999988766678999999999 554 0
Q ss_pred ---------------------eeeeecCC------------------------------------------------c--
Q psy7164 638 ---------------------VLLFKMNL------------------------------------------------H-- 646 (2307)
Q Consensus 638 ---------------------l~~f~~~~------------------------------------------------H-- 646 (2307)
+|+|+|.+ |
T Consensus 659 ~~~~~d~~~~~~~~~d~~~~~~~~ys~~~~~RaiP~~~DGlKp~qRkil~~~~~~~~~~~~k~~k~a~~V~~~~~yhHGd 738 (1177)
T 4gfh_A 659 PGTVLDPTLKEIPISDFINKELILFSLADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTAYHHGE 738 (1177)
T ss_dssp TTCCCCSSCSEEEHHHHHHHTHHHHHHHHHHHHSCBTTTCCCHHHHHHHHHHHHTTTTSCEEHHHHHHHHHHHTTCCSCH
T ss_pred cccccccccccccHHHHHHhhhhhhhhhhhhhcCchhhhhcCcccceEehhhhhhccCCCccHHHHHHHHHhhhccCCCc
Confidence 44553222 3
Q ss_pred -------------ccCC--------------------Cccc-cc---------------------------CCCCCCccc
Q psy7164 647 -------------KVTS--------------------DSIS-MF---------------------------IGRIEPEWY 665 (2307)
Q Consensus 647 -------------fVGS--------------------D~As-iF---------------------------g~~iEP~vl 665 (2307)
|||| |||| .| |+.+||+||
T Consensus 739 ~s~~~tiv~mAQ~f~gs~~~~Ll~~~GnFGsr~~~g~~~Aa~RYte~rl~~~a~~l~~~~d~~~v~~~~~d~~~~EP~~~ 818 (1177)
T 4gfh_A 739 QSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQEDEKTVEPEWY 818 (1177)
T ss_dssp HHHHHHHHHHHCCSTTSCTTCSBCCBSCCCCTTTTTTTCCCTTTCEECBCTTHHHHSCGGGTTTSCEEEETTEEEEESCC
T ss_pred chHHHHHHHHHHHHHhhCceeeEEccCCCCccCCCCCcccccchhhhhHHHHHHHhcchhccccccCcCCCCCccCcccc
Confidence 9998 6777 22 889999999
Q ss_pred cCCCCeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCCCCCcccCCCCCcEEEEecCcEEEEEEEEEEEcCCeE
Q psy7164 666 IPIIPMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKL 745 (2307)
Q Consensus 666 ppiiP~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~~~l~P~ykGf~G~I~~tg~g~~~vrG~~~~~~~~~I 745 (2307)
||+|||||||||+|||||||||||||||+|||+||+++|+|+++.+|.|||+||+|+|+..+.|+|+++|+++..++++|
T Consensus 819 ~p~iP~lLvNGs~GIavGmaT~IPphN~~Evi~~~~~li~~~~~~~l~P~~~g~~G~i~~~~~gr~~~~g~~e~~~~~~i 898 (1177)
T 4gfh_A 819 LPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGWTGTIEEIEPLRYRMYGRIEQIGDNVL 898 (1177)
T ss_dssp CCSSCSTTTTCEEEECSSCEEEECCBCHHHHHHHHHHHHTTCCCCCCCBCCTTCCCEEEECSTTCEEEECEEEEEETTEE
T ss_pred ccccchhhccCCCcccccccccCCCCCHHHHHHHHHHHhcCCCHHHcCCCCCCCCCceEeecCcEEEEEEEEEEcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred EEEecCCccchHHHHHHHHHHhcC--CCcC---c----------------------------cc---------------c
Q psy7164 746 EITELQVGKWTTDYKDTLDTLLHG--AEKD---E----------------------------VH---------------P 777 (2307)
Q Consensus 746 vITELPy~v~t~~~~e~La~Lv~~--~~~~---~----------------------------y~---------------~ 777 (2307)
+||||||||||++|+|+|++++.+ +++. + |+ +
T Consensus 899 ~ITELP~~v~~~~~~e~i~~~~~~~~K~~~~I~d~~d~sd~~vrivI~lk~~~~~~~~~~~L~k~t~L~~s~~~~Nm~~~ 978 (1177)
T 4gfh_A 899 EITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAF 978 (1177)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHCCSSSCCCCSEEEECCSSSCCEEEECCHHHHHHHHHHCHHHHTTCEEEECCSCCEEE
T ss_pred EEEeCCccccHHHHHHHHHHHhhhccCcccceeechhcCCCccEEEEEECCCccHHHHHHhHHHhccCcceecceEEEEE
Confidence 999999999999999999999943 3321 1 11 1
Q ss_pred CC-CC---CCCHHHHHHHHHHHHHHHHHHHHHh-----------hhh----HHHhhcc---cCCCch---HHHHHHHhhc
Q psy7164 778 GP-GR---KSHPRPIAPKSYKIDDDSEEEEIEE-----------VFH----DNELAKP---QKTGPQ---LERQERQAAE 832 (2307)
Q Consensus 778 t~-~~---~~sl~eIL~eF~~~Rl~~y~rr~e~-----------l~n----i~~li~~---~~~d~~---~a~~~~~~~~ 832 (2307)
+. ++ +++++|||++|++||+++|+||.++ +++ |+++|.. +..+.. .+..+.....
T Consensus 979 d~~g~i~k~~~l~eiL~~f~~~R~e~~~rRk~~~l~~l~~~l~k~~~r~~fi~~vi~~~L~i~~~~~devI~~Lr~~~~~ 1058 (1177)
T 4gfh_A 979 DPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFP 1058 (1177)
T ss_dssp CTTSCEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSSSCHHHHHHHHHHTTCC
T ss_pred cCCCCccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCeEEEecCCHHHHHHHHHHCCCc
Confidence 11 11 4899999999999999999999665 222 4444432 222221 1211111000
Q ss_pred c-----------------------------------ccccccccCCCCCCChhhHHHHHcCccccccHHHHHHHHHHHHH
Q psy7164 833 G-----------------------------------EDDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDD 877 (2307)
Q Consensus 833 ~-----------------------------------~~~~~~~~~~~~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~e 877 (2307)
. ..+........+..+..||||||+||||+||+||++||++|+++
T Consensus 1059 ~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qydyIL~MrL~~LT~ee~ekL~~E~~e 1138 (1177)
T 4gfh_A 1059 RFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQE 1138 (1177)
T ss_dssp EECSSSCEECCC------------------------------------CTTTCBTHHHHSSBGGGGSHHHHHHHHHHHHH
T ss_pred ccchhhhhhcccchhhhhhhhhhhccccccccccccccchhhhhhcccccccchhhHHhcChHHHHHHHHHHHHHHHHHH
Confidence 0 00000112224567788999999999999999999999999999
Q ss_pred HHHHHHHHHccCchhhHHHHHHHHHHHhCCCC
Q psy7164 878 KMTELNILKKKAPTDLWSDDLDALREKDKIHP 909 (2307)
Q Consensus 878 l~~ei~~L~~~s~~~lw~~DL~el~k~l~k~~ 909 (2307)
+++||++|+++++++||++||++|+++|++..
T Consensus 1139 ~~~ei~~L~~~s~~~lw~~DLd~~~~~~~~~~ 1170 (1177)
T 4gfh_A 1139 KETELENLLKLSAKDIWNTDLKAFEVGYQEFL 1170 (1177)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998754
|
| >3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A* | Back alignment and structure |
|---|
| >3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* | Back alignment and structure |
|---|
| >2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* | Back alignment and structure |
|---|
| >2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A* | Back alignment and structure |
|---|
| >1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* | Back alignment and structure |
|---|
| >3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* | Back alignment and structure |
|---|
| >2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A* | Back alignment and structure |
|---|
| >3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* | Back alignment and structure |
|---|
| >1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ... | Back alignment and structure |
|---|
| >1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A | Back alignment and structure |
|---|
| >4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A | Back alignment and structure |
|---|
| >4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
| >3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens} | Back alignment and structure |
|---|
| >3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ... | Back alignment and structure |
|---|
| >4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ... | Back alignment and structure |
|---|
| >1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A* | Back alignment and structure |
|---|
| >3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A* | Back alignment and structure |
|---|
| >3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} | Back alignment and structure |
|---|
| >3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C* | Back alignment and structure |
|---|
| >3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A* | Back alignment and structure |
|---|
| >3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
| >4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* | Back alignment and structure |
|---|
| >4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* | Back alignment and structure |
|---|
| >2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
| >1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7 | Back alignment and structure |
|---|
| >2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A* | Back alignment and structure |
|---|
| >3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A* | Back alignment and structure |
|---|
| >3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A | Back alignment and structure |
|---|
| >1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
| >3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* | Back alignment and structure |
|---|
| >3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* | Back alignment and structure |
|---|
| >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} | Back alignment and structure |
|---|
| >3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A | Back alignment and structure |
|---|
| >1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* | Back alignment and structure |
|---|
| >3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 | Back alignment and structure |
|---|
| >3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* | Back alignment and structure |
|---|
| >3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} | Back alignment and structure |
|---|
| >2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* | Back alignment and structure |
|---|
| >3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A* | Back alignment and structure |
|---|
| >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* | Back alignment and structure |
|---|
| >1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* | Back alignment and structure |
|---|
| >3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* | Back alignment and structure |
|---|
| >3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A* | Back alignment and structure |
|---|
| >3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* | Back alignment and structure |
|---|
| >2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B | Back alignment and structure |
|---|
| >2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A* | Back alignment and structure |
|---|
| >1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 | Back alignment and structure |
|---|
| >1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A | Back alignment and structure |
|---|
| >1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1 | Back alignment and structure |
|---|
| >1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A | Back alignment and structure |
|---|
| >2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A | Back alignment and structure |
|---|
| >1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 | Back alignment and structure |
|---|
| >3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* | Back alignment and structure |
|---|
| >3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* | Back alignment and structure |
|---|
| >2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A* | Back alignment and structure |
|---|
| >2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A | Back alignment and structure |
|---|
| >3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* | Back alignment and structure |
|---|
| >2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A | Back alignment and structure |
|---|
| >2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A | Back alignment and structure |
|---|
| >2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A | Back alignment and structure |
|---|
| >2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A | Back alignment and structure |
|---|
| >2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A* | Back alignment and structure |
|---|
| >1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2 | Back alignment and structure |
|---|
| >3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* | Back alignment and structure |
|---|
| >2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} | Back alignment and structure |
|---|
| >3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... | Back alignment and structure |
|---|
| >3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* | Back alignment and structure |
|---|
| >2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* | Back alignment and structure |
|---|
| >1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B | Back alignment and structure |
|---|
| >2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A | Back alignment and structure |
|---|
| >3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* | Back alignment and structure |
|---|
| >3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* | Back alignment and structure |
|---|
| >3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 | Back alignment and structure |
|---|
| >1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A | Back alignment and structure |
|---|
| >2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* | Back alignment and structure |
|---|
| >2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A | Back alignment and structure |
|---|
| >3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* | Back alignment and structure |
|---|
| >2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A | Back alignment and structure |
|---|
| >1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 | Back alignment and structure |
|---|
| >1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A | Back alignment and structure |
|---|
| >2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A* | Back alignment and structure |
|---|
| >3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A | Back alignment and structure |
|---|
| >3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
| >3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* | Back alignment and structure |
|---|
| >2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* | Back alignment and structure |
|---|
| >3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* | Back alignment and structure |
|---|
| >3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* | Back alignment and structure |
|---|
| >1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 | Back alignment and structure |
|---|
| >1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A | Back alignment and structure |
|---|
| >4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} | Back alignment and structure |
|---|
| >2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* | Back alignment and structure |
|---|
| >2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* | Back alignment and structure |
|---|
| >2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A | Back alignment and structure |
|---|
| >3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} | Back alignment and structure |
|---|
| >1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* | Back alignment and structure |
|---|
| >1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A | Back alignment and structure |
|---|
| >3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* | Back alignment and structure |
|---|
| >1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B | Back alignment and structure |
|---|
| >3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* | Back alignment and structure |
|---|
| >1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A* | Back alignment and structure |
|---|
| >4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A | Back alignment and structure |
|---|
| >3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
| >2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* | Back alignment and structure |
|---|
| >1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* | Back alignment and structure |
|---|
| >3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A | Back alignment and structure |
|---|
| >4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A* | Back alignment and structure |
|---|
| >1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1 | Back alignment and structure |
|---|
| >1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1 | Back alignment and structure |
|---|
| >3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A* | Back alignment and structure |
|---|
| >1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2307 | ||||
| d1bjta_ | 760 | e.11.1.1 (A:) DNA topoisomerase II, C-terminal fra | 1e-67 | |
| d1bjta_ | 760 | e.11.1.1 (A:) DNA topoisomerase II, C-terminal fra | 1e-13 | |
| d1bjta_ | 760 | e.11.1.1 (A:) DNA topoisomerase II, C-terminal fra | 2e-12 | |
| d1pvga2 | 239 | d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's | 9e-57 | |
| d1ei1a2 | 219 | d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli | 4e-37 | |
| d1kija2 | 212 | d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermoph | 1e-34 | |
| d1pvga1 | 161 | d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's | 9e-27 | |
| d1t94a2 | 333 | e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Ho | 5e-25 | |
| d1t94a2 | 333 | e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Ho | 2e-18 | |
| d1zeta2 | 273 | e.8.1.7 (A:27-299) DNA polymerase iota {Human (Hom | 3e-24 | |
| d1zeta2 | 273 | e.8.1.7 (A:27-299) DNA polymerase iota {Human (Hom | 2e-13 | |
| d1jiha2 | 389 | e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeas | 2e-21 | |
| d1jiha2 | 389 | e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeas | 1e-18 | |
| d1im4a_ | 209 | e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolob | 1e-17 | |
| d1im4a_ | 209 | e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolob | 4e-12 | |
| d1jx4a2 | 240 | e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sul | 4e-17 | |
| d1jx4a2 | 240 | e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sul | 1e-11 | |
| d1in1a_ | 88 | c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sa | 6e-17 | |
| d1wf6a_ | 132 | c.15.1.5 (A:) DNA topoisomerase II binding protein | 9e-15 | |
| d1cdza_ | 96 | c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Hom | 2e-12 | |
| d1t15a2 | 102 | c.15.1.3 (A:1758-1859) Breast cancer associated pr | 2e-11 | |
| d1ab4a_ | 493 | e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxI | 2e-10 | |
| d1ab4a_ | 493 | e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxI | 3e-05 | |
| d1t15a1 | 109 | c.15.1.3 (A:1649-1757) Breast cancer associated pr | 7e-08 | |
| d1t94a1 | 105 | d.240.1.1 (A:411-515) DNA polymerase kappa {Human | 7e-05 | |
| d1kzyc1 | 153 | c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) | 0.001 |
| >d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 760 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Type II DNA topoisomerase superfamily: Type II DNA topoisomerase family: Type II DNA topoisomerase domain: DNA topoisomerase II, C-terminal fragment (residues 410-1202) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 243 bits (620), Expect = 1e-67
Identities = 112/181 (61%), Positives = 139/181 (76%), Gaps = 7/181 (3%)
Query: 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREAT 514
PKLEDAN AGTK CTL+LTEGDSA SLAV+GL VVGRD YG +PLRGK+LNVREA+
Sbjct: 8 YPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREAS 67
Query: 515 HKQILENAEINNLVKILGLQYSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFI 574
QIL+NAEI + KI+GLQ+ KKY ED K+LRYG LMIMTDQD DGSHIKGLIINF+
Sbjct: 68 ADQILKNAEIQAIKKIMGLQHRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFL 124
Query: 575 HHNWPTLLRLP-FLEEFITPIIKAT---KAREELSFYSLPEFEEWKEETTNWHTYKIKYY 630
++ LL + FL EFITPIIK + + ++FY++P++E+W+EE ++ T+K KYY
Sbjct: 125 ESSFLGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYY 184
Query: 631 K 631
K
Sbjct: 185 K 185
|
| >d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 760 | Back information, alignment and structure |
|---|
| >d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 760 | Back information, alignment and structure |
|---|
| >d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239 | Back information, alignment and structure |
|---|
| >d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Length = 219 | Back information, alignment and structure |
|---|
| >d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Length = 212 | Back information, alignment and structure |
|---|
| >d1pvga1 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 161 | Back information, alignment and structure |
|---|
| >d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]} Length = 333 | Back information, alignment and structure |
|---|
| >d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]} Length = 333 | Back information, alignment and structure |
|---|
| >d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
| >d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
| >d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 389 | Back information, alignment and structure |
|---|
| >d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 389 | Back information, alignment and structure |
|---|
| >d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 209 | Back information, alignment and structure |
|---|
| >d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 209 | Back information, alignment and structure |
|---|
| >d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} Length = 240 | Back information, alignment and structure |
|---|
| >d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} Length = 240 | Back information, alignment and structure |
|---|
| >d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
| >d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 132 | Back information, alignment and structure |
|---|
| >d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
| >d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
| >d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]} Length = 493 | Back information, alignment and structure |
|---|
| >d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]} Length = 493 | Back information, alignment and structure |
|---|
| >d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
| >d1t94a1 d.240.1.1 (A:411-515) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
| >d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 153 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2307 | |||
| d1bjta_ | 760 | DNA topoisomerase II, C-terminal fragment (residue | 100.0 | |
| d1pvga2 | 239 | DNA topoisomerase II {Baker's yeast (Saccharomyces | 100.0 | |
| d1t94a2 | 333 | DNA polymerase kappa {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1zeta2 | 273 | DNA polymerase iota {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1jx4a2 | 240 | DinB homolog (DBH) {Archaeon Sulfolobus solfataric | 100.0 | |
| d1ei1a2 | 219 | DNA gyrase B {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1kija2 | 212 | DNA gyrase B {Thermus thermophilus [TaxId: 274]} | 100.0 | |
| d1im4a_ | 209 | DinB homolog (DBH) {Archaeon Sulfolobus solfataric | 100.0 | |
| d1jiha2 | 389 | DNA polymerase eta {Baker's yeast (Saccharomyces c | 100.0 | |
| d1ab4a_ | 493 | DNA Gyrase A {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1s14a_ | 168 | Topoisomerase IV subunit B {Escherichia coli [TaxI | 100.0 | |
| d1ei1a1 | 172 | DNA gyrase B {Escherichia coli [TaxId: 562]} | 99.91 | |
| d1kija1 | 172 | DNA gyrase B {Thermus thermophilus [TaxId: 274]} | 99.91 | |
| d1s16a1 | 167 | Topoisomerase IV subunit B {Escherichia coli [TaxI | 99.9 | |
| d1pvga1 | 161 | DNA topoisomerase II {Baker's yeast (Saccharomyces | 99.89 | |
| d1cdza_ | 96 | DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta | 99.54 | |
| d1in1a_ | 88 | DNA ligase III alpha {Human (Homo sapiens) [TaxId: | 99.48 | |
| d1wf6a_ | 132 | DNA topoisomerase II binding protein 1, TopBP1 {Hu | 99.45 | |
| d1t15a2 | 102 | Breast cancer associated protein, BRCA1 {Human (Ho | 99.37 | |
| d1h7sa2 | 203 | DNA mismatch repair protein PMS2 {Human (Homo sapi | 99.16 | |
| d2hkja3 | 219 | Topoisomerase VI-B subunit {Archaeon Sulfolobus sh | 99.12 | |
| d1t15a1 | 109 | Breast cancer associated protein, BRCA1 {Human (Ho | 98.93 | |
| d1t94a1 | 105 | DNA polymerase kappa {Human (Homo sapiens) [TaxId: | 98.77 | |
| d1jx4a1 | 101 | DinB homolog (DBH) {Archaeon Sulfolobus solfataric | 98.7 | |
| d1x75a1 | 132 | DNA Gyrase A {Escherichia coli [TaxId: 562]} | 98.48 | |
| d1unnc_ | 111 | DNA polymerase IV {Escherichia coli [TaxId: 562]} | 98.46 | |
| d1b63a2 | 218 | DNA mismatch repair protein MutL {Escherichia coli | 98.41 | |
| d1zeta1 | 115 | DNA polymerase iota {Human (Homo sapiens) [TaxId: | 98.41 | |
| d1jiha1 | 120 | DNA polymerase eta {Baker's yeast (Saccharomyces c | 98.25 | |
| d1k1sa1 | 105 | DinB homolog (DBH) {Archaeon Sulfolobus solfataric | 98.21 | |
| d1kzyc1 | 153 | 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | 98.05 | |
| d1l7ba_ | 92 | NAD+-dependent DNA ligase, domain 4 {Thermus therm | 97.84 | |
| d1uyla_ | 208 | HSP90 {Human (Homo sapiens) [TaxId: 9606]} | 97.43 | |
| d2iwxa1 | 213 | HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T | 97.37 | |
| d2gqpa1 | 227 | HSP90 {Dog (Canis familiaris) [TaxId: 9615]} | 96.98 | |
| d1th8a_ | 139 | Anti-sigma factor spoIIab {Bacillus stearothermoph | 96.76 | |
| d1bxda_ | 161 | Histidine kinase domain of the osmosensor EnvZ {Es | 96.56 | |
| d2c2aa2 | 161 | Sensor histidine kinase TM0853 {Thermotoga maritim | 96.4 | |
| d1ysra1 | 148 | Sensor-type histidine kinase PrrB {Mycobacterium t | 96.39 | |
| d1id0a_ | 146 | Histidine kinase PhoQ domain {Escherichia coli [Ta | 96.33 | |
| d2i1qa1 | 60 | DNA repair protein Rad51, N-terminal domain {Archa | 96.31 | |
| d1jm6a2 | 190 | Pyruvate dehydrogenase kinase {Rat (Rattus norvegi | 96.0 | |
| d1l0ba2 | 97 | Breast cancer associated protein, BRCA1 {Rat (Ratt | 95.52 | |
| d1gkza2 | 193 | Branched-chain alpha-ketoacid dehydrogenase kinase | 95.33 | |
| d1pzna1 | 61 | DNA repair protein Rad51, N-terminal domain {Archa | 95.0 | |
| d1y8oa2 | 125 | Pyruvate dehydrogenase kinase {Human (Homo sapiens | 94.73 | |
| d1szpa1 | 64 | DNA repair protein Rad51, N-terminal domain {Baker | 94.16 | |
| d1ixma_ | 179 | Sporulation response regulatory protein Spo0B {Bac | 92.73 | |
| d1b22a_ | 70 | DNA repair protein Rad51, N-terminal domain {Human | 92.56 | |
| d1kfta_ | 56 | Excinuclease UvrC C-terminal domain {Escherichia c | 92.36 | |
| d1r62a_ | 156 | Nitrogen regulation protein NtrB, C-terminal domai | 91.72 | |
| d2a1ja1 | 62 | DNA repair endonuclease XPF {Human (Homo sapiens) | 89.89 | |
| d1t94a2 | 333 | DNA polymerase kappa {Human (Homo sapiens) [TaxId: | 86.12 | |
| d1unnc_ | 111 | DNA polymerase IV {Escherichia coli [TaxId: 562]} | 85.87 | |
| d1kzyc2 | 106 | 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | 83.05 | |
| d1k1sa1 | 105 | DinB homolog (DBH) {Archaeon Sulfolobus solfataric | 83.02 | |
| d2fmpa2 | 57 | DNA polymerase beta {Human (Homo sapiens) [TaxId: | 82.93 | |
| d2bgwa1 | 70 | DNA repair endonuclease XPF {Aeropyrum pernix [Tax | 82.71 | |
| d1x2ia1 | 68 | ATP-dependent RNA helicase PF2015 {Pyrococcus furi | 81.82 | |
| d2bcqa2 | 57 | DNA polymerase lambda {Human (Homo sapiens) [TaxId | 81.21 |
| >d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Type II DNA topoisomerase superfamily: Type II DNA topoisomerase family: Type II DNA topoisomerase domain: DNA topoisomerase II, C-terminal fragment (residues 410-1202) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-105 Score=1051.46 Aligned_cols=452 Identities=45% Similarity=0.754 Sum_probs=371.5
Q ss_pred ccccccccccCCCCCCCcEEEEEecCccchhcccCcccccccceeeccCCcccchhhccchHHHhhcHHHHHHHHHhccc
Q psy7164 455 VPKLEDANDAGTKNSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLVKILGLQ 534 (2307)
Q Consensus 455 lpKL~Dc~~a~tk~~~~ceLfIvEGDSA~~~a~sGsak~gRD~qaIlPLRGKiLNV~ka~~~ki~~N~EI~~Li~aLGlg 534 (2307)
+|||+||+.||++++.+|||||||||||+|+|++|++++|||+|||||||||||||++++.+||++|+||++|++||||+
T Consensus 8 ~pkl~d~~~~g~~~~~~~~l~~~EGdSA~~~~~~g~~~~~rd~~~v~plrGK~lN~~~~~~~~~~~n~ei~~l~~~lG~~ 87 (760)
T d1bjta_ 8 YPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQ 87 (760)
T ss_dssp CTTCBCCTTTTSGGGGGCEEEEEESHHHHHHHHHHHHHHCSSSEEEEEEECCCCSCCC------CCHHHHHHHHHHHTCC
T ss_pred CCCcccccccCCCChhhcEEEEecccCccccccCcccccccccEEEeecCCcccccccCCHHHHhhCHHHHHHHHHHCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCCcCCCCCCCCCcEEecccCCCCCCchhHHHHHHHHHhhhhhhc-CCcEEEecCcEEEEEe---CCeEEEEeChH
Q psy7164 535 YSKKYTTVEDMKTLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLR-LPFLEEFITPIIKATK---AREELSFYSLP 610 (2307)
Q Consensus 535 ~~~~y~~~~d~~~LRYgkIiImTDaDvDG~HI~~LLltff~r~~p~Li~-~G~vy~~~tPL~kv~~---gk~~~~fys~~ 610 (2307)
++++| +|+++||||||||||||||||+||+||||||||+|||+||+ +||||+|+||||||+. ++++.+||+++
T Consensus 88 ~~~~~---~~~~~lrY~~i~imtDaD~DG~hI~~Lll~ff~~~~p~l~~~~g~i~~~~~Pl~~~~~~~~~~~~~~~y~~~ 164 (760)
T d1bjta_ 88 HRKKY---EDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFLGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMP 164 (760)
T ss_dssp SSBCC---SCSSSSSCSEEEEEEC-----CCHHHHHHHHHHHHBTTTTTSTTSEEECCCCSEEEEECSSCCEEEEESSHH
T ss_pred CCCCC---CchhhCCCCcEEEEECCCCCchHHHHHHHHHHHHhhHHHhccCCEEEEEeCCcEEEEecCCCcceeeecchh
Confidence 99988 47999999999999999999999999999999999999998 8999999999999975 35678999999
Q ss_pred HHHHHHHHhcCCCccCcEEeccc----------ccC-------------------------c------------------
Q psy7164 611 EFEEWKEETTNWHTYKIKYYKVV----------YVT-------------------------G------------------ 637 (2307)
Q Consensus 611 e~~~~~~~~~~~~~~~ikryKGL----------yf~-------------------------~------------------ 637 (2307)
||++|..+....++|+|+||||| ||. +
T Consensus 165 e~~~~~~~~~~~~~~~i~~yKGLG~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~F~k~~~d~RKewl~~~~~~~~ 244 (760)
T d1bjta_ 165 DYEKWREEESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSKKKADDRKEWLRQYEPGTV 244 (760)
T ss_dssp HHHHHHHHTTTTSCEEECCCCCCSTTHHHHHHHHHHHHHHHHHHHHHCC---------------------CCCCSCC---
T ss_pred hHHHHHHHhcCccccchhcccccccccchhhHHHhcccccccceeEeccchhHHHHHHHHhhcccchHHHHHhhcccccc
Confidence 99999988766678999999999 555 0
Q ss_pred -----------------eeeeecCC------------------------------------------------c------
Q psy7164 638 -----------------VLLFKMNL------------------------------------------------H------ 646 (2307)
Q Consensus 638 -----------------l~~f~~~~------------------------------------------------H------ 646 (2307)
|++|++.+ |
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~s~~~~~RaiP~~~DGlKp~qRkil~~~~~~~~~~~~k~~k~a~~v~~~~~yhHGe~sl~ 324 (760)
T d1bjta_ 245 LDPTLKEIPISDFINKELILFSLADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTAYHHGEQSLA 324 (760)
T ss_dssp ------------CCTHHHHHHHHHHHHHHSCBTTTCCCHHHHHHHHHHHHHTCCSCEEHHHHHHHHHHHHTCCSSSCCHH
T ss_pred ccccccceeHHHHHHHHHHHHHHHHHhccCCchhhcccHHHHHHHHHHHHhcCCCCCccccccchhhhhhcCCCCCcchh
Confidence 55553322 3
Q ss_pred ---------ccCC--------------------Cccc---cc-------------------------CCCCCCccccCCC
Q psy7164 647 ---------KVTS--------------------DSIS---MF-------------------------IGRIEPEWYIPII 669 (2307)
Q Consensus 647 ---------fVGS--------------------D~As---iF-------------------------g~~iEP~vlppii 669 (2307)
|||| |||| || |..+||+||||+|
T Consensus 325 ~aiv~maQ~f~gsnn~~ll~~~G~fGsr~~~g~~~AA~RYietrLs~~~~~lf~~~D~~~l~~~~~dg~~iEP~~y~pii 404 (760)
T d1bjta_ 325 QTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQEDEKTVEPEWYLPIL 404 (760)
T ss_dssp HHHHHHHCCSTTSCSSCSEEEESCCCCTTTTSTTCCCGGGCEEEECTTHHHHSCGGGGGGSCEEEETTEEEEESCCCCSS
T ss_pred HHHHHHHhhhhhcceeeeeeccCCccccCCCCCcchHHHHHHhhHHHHHHHHhcccccceeecccCCCceeCcccchhHH
Confidence 8888 6888 22 8889999999999
Q ss_pred CeeeecCCCceeecccCCCCCCCHHHHHHHHHHHHcCCCCCCCcccCCCCCcEEEEecCcEEEEEEEEEEEcCCeEEEEe
Q psy7164 670 PMVLVNGAEGIGTGWMTKIPNHNPREIVDNIKRMIRGEDPLPMKPWYKNFKGEIDYCGDSRFVVNGEIAILDDDKLEITE 749 (2307)
Q Consensus 670 P~LLVNGasGIAvGmATnIPPHN~~EVIdal~~lL~~~~~~~l~P~ykGf~G~I~~tg~g~~~vrG~~~~~~~~~IvITE 749 (2307)
||||||||+|||||||||||||||.|||+||+++|+|+++.+|.|||+||+|.|+..+.|+|.++|+++..++++|+|||
T Consensus 405 P~lLvNGs~GIatG~aT~IPphNp~eVi~~i~~~i~~~~~~~~~P~~~Gf~G~i~~~~~g~~~~~g~~e~~~~~~I~ITE 484 (760)
T d1bjta_ 405 PMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGWTGTIEEIEPLRYRMYGRIEQIGDNVLEITE 484 (760)
T ss_dssp CHHHHTCEEEECSSCEEEECCBCHHHHHHHHHHHHTTCCCCCCCBCCTTCCSEEEEEETTEEEEECEEEEEETTEEEEEE
T ss_pred HHHHHhhhhhhhhhhhhccCcccHHHHHHHHHHHhCCchhhccCCCccccccccccccccceEEEEEEeecCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccchHHHHHHHHHHhcCCC-cCc--------------------------------cc---------------cCCC-
Q psy7164 750 LQVGKWTTDYKDTLDTLLHGAE-KDE--------------------------------VH---------------PGPG- 780 (2307)
Q Consensus 750 LPy~v~t~~~~e~La~Lv~~~~-~~~--------------------------------y~---------------~t~~- 780 (2307)
||||+||++|+|+|++++..++ +.+ |+ ++..
T Consensus 485 LP~gvwt~~~~E~i~~ll~~~~K~~~~i~d~~d~s~~~Vr~vI~lk~~~~~~~~~~~l~k~~kL~~s~s~~Nm~l~d~~g 564 (760)
T d1bjta_ 485 LPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHG 564 (760)
T ss_dssp CCTTCCHHHHHHHHHHHHSCCTTSCCCCCEEEECCSSSCCEEEECCHHHHHHHHHHCHHHHTTCEEEEECTTEEEECTTS
T ss_pred ccccchhhhHHHHHHHHHhcccccCcccchhhccccccceeEEEecccccccchhhhhhhhhhhhhhhhhcceeEEcCCC
Confidence 9999999999999999875432 211 00 1111
Q ss_pred C---CCCHHHHHHHHHHHHHHHHHHHHHh-----------hhh----HHHhhcc---cCCCchHHHHHH-Hhhc--c---
Q psy7164 781 R---KSHPRPIAPKSYKIDDDSEEEEIEE-----------VFH----DNELAKP---QKTGPQLERQER-QAAE--G--- 833 (2307)
Q Consensus 781 ~---~~sl~eIL~eF~~~Rl~~y~rr~e~-----------l~n----i~~li~~---~~~d~~~a~~~~-~~~~--~--- 833 (2307)
+ ++++.+||++|++||+++|++|.++ +++ |+++|.. +........... .+.. .
T Consensus 565 ~i~k~~sl~eIL~~f~~~Rle~y~kRk~~~l~~l~~el~~l~~k~rFI~~vi~~~I~I~~~~kdeIi~~L~~~~~~k~~k 644 (760)
T d1bjta_ 565 KIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNK 644 (760)
T ss_dssp CEEEESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCTTCCHHHHHHHHHHTTCCEECT
T ss_pred cccchhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHhhhheeeeecCCHHHHHHHHHhCCCchhhh
Confidence 1 4899999999999999999999776 223 3333322 111111111110 0000 0
Q ss_pred ---------------------------c-----cccccccCCCCCCChhhHHHHHcCccccccHHHHHHHHHHHHHHHHH
Q psy7164 834 ---------------------------E-----DDEAGSQTQEEEDPDKDYDYLLGMTFWSLTMERKNELLKKRDDKMTE 881 (2307)
Q Consensus 834 ---------------------------~-----~~~~~~~~~~~~~~~~q~dyIL~M~L~rLT~ee~~kL~~E~~el~~e 881 (2307)
. .+........+..+..||+|||+||||+||.|++++|++|++++++|
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~~~~~~~~~~ydYLL~MrL~~LT~eei~kL~~E~~~l~~E 724 (760)
T d1bjta_ 645 EGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETE 724 (760)
T ss_dssp TCCEECSCC-----------------------------------CTTTCBSHHHHTSCGGGGSHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccchhhhHhhhhhhhcccccccccchhhhhhhhhhhccccchhHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00001111234566679999999999999999999999999999999
Q ss_pred HHHHHccCchhhHHHHHHHHHHHhCCCC
Q psy7164 882 LNILKKKAPTDLWSDDLDALREKDKIHP 909 (2307)
Q Consensus 882 i~~L~~~s~~~lw~~DL~el~k~l~k~~ 909 (2307)
++.|+++++++||++||++|+++|++..
T Consensus 725 i~~L~~~t~~~lW~~DL~~l~~~y~k~~ 752 (760)
T d1bjta_ 725 LENLLKLSAKDIWNTDLKAFEVGYQEFL 752 (760)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998753
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| >d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} | Back information, alignment and structure |
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| >d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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| >d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1pvga1 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} | Back information, alignment and structure |
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| >d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1t94a1 d.240.1.1 (A:411-515) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jx4a1 d.240.1.1 (A:241-341) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} | Back information, alignment and structure |
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| >d1x75a1 e.11.1.1 (A:363-494) DNA Gyrase A {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1unnc_ d.240.1.1 (C:) DNA polymerase IV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1zeta1 d.240.1.1 (A:300-414) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jiha1 d.240.1.1 (A:390-509) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1k1sa1 d.240.1.1 (A:240-344) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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| >d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
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| >d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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| >d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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| >d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
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| >d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} | Back information, alignment and structure |
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| >d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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| >d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1unnc_ d.240.1.1 (C:) DNA polymerase IV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1k1sa1 d.240.1.1 (A:240-344) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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| >d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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| >d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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