Psyllid ID: psy7170

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
MDMELEEKDEEYMYLYGPHATVDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTSTPSTGLAPSA
Secondary Structure (PSIPRED)
ccccccccccccEEHHccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHccccccHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHcccccHHHHHccccccccEcEEcHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHcccccHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
mdmeleekdeeymylygphatvdvafinpaNVVFVYMLVRELvdgdkidseSQLQAVVLTCLYLSYSymgneisyplkpflvedCKEKFWDRCLHIVNNMSSSmlrinaepgfFTEIFTELKacgtstpstglapsa
Flexible Loop (DISEMBL)
MDMELEEKDEEYMYLYGPHATVDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKacgtstpstglapsa
Low Complexity Region (SEG)
MDMELEEKDEEYMYLYGPHATVDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTSTPSTGLAPSA
Disordered region (IsUnstruct)
***********YMYLYGPHATVDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACG************
Disordered Region (DISOPRED)
********DEEYMYLYGPHATVDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTE*****************
Disordered Region (DISEMBL)
********DEEYMYLYGPHATVDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACG************
Disordered Region (DISPRO)
******EKDEEYMYLYGPHATVDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKAC*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDMELEEKDEEYMYLYGPHATVDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTSTPSTGLAPSA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	137	2.2.26 [Sep-21-2011]
O35926	369	Cyclin-dependent kinase 5	yes	N/A	0.824	0.306	0.610	4e-37
Q28199	307	Cyclin-dependent kinase 5	no	N/A	0.722	0.322	0.67	1e-36
P61810	307	Cyclin-dependent kinase 5	no	N/A	0.722	0.322	0.67	1e-36
P61809	307	Cyclin-dependent kinase 5	no	N/A	0.722	0.322	0.67	1e-36
Q15078	307	Cyclin-dependent kinase 5	yes	N/A	0.722	0.322	0.67	2e-36
Q4KYY2	307	Cyclin-dependent kinase 5	N/A	N/A	0.722	0.322	0.66	1e-35
Q13319	367	Cyclin-dependent kinase 5	no	N/A	0.729	0.272	0.64	2e-35
Q22695	356	Cyclin-dependent kinase 5	yes	N/A	0.766	0.294	0.514	4e-29

>sp|O35926|CD5R2_MOUSE Cyclin-dependent kinase 5 activator 2 OS=Mus musculus GN=Cdk5r2 PE=3 SV=2

 Score =  153 bits (386), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 69/113 (61%), Positives = 87/113 (76%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           D AFI PAN+VFVY+L RE + GD++ S ++LQA  LTCLYL+YSYMGNEISYPLKPFLV
Sbjct: 227 DQAFITPANLVFVYLLCRESLRGDELASAAELQAAFLTCLYLAYSYMGNEISYPLKPFLV 286

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTSTPSTGLAP 135
           E  KE+FW RCL ++  +S  MLR+NA+P FFT++F +LK  G +  STG  P
Sbjct: 287 EPDKERFWQRCLRLIQRLSPQMLRLNADPHFFTQVFQDLKNEGEAAASTGGPP 339

Activator of CDK5/TPKII.
Mus musculus (taxid: 10090)

>sp|Q28199|CD5R1_BOVIN Cyclin-dependent kinase 5 activator 1 OS=Bos taurus GN=CDK5R1 PE=1 SV=1

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 67/100 (67%), Positives = 85/100 (85%), Gaps = 1/100 (1%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYSYMGNEISYPLKPFLV
Sbjct: 192 DQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLV 250

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 122
           E CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK
Sbjct: 251 ESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLK 290

p35 is a neuron specific activator of CDK5. The complex p35/CDK5 is required for neurite outgrowth and cortical lamination. Involved in dendritic spine morphogenesis by mediating the EFNA1-EPHA4 signaling. Activator of TPKII.

Bos taurus (taxid: 9913)

>sp|P61810|CD5R1_RAT Cyclin-dependent kinase 5 activator 1 OS=Rattus norvegicus GN=Cdk5r1 PE=1 SV=1

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 67/100 (67%), Positives = 85/100 (85%), Gaps = 1/100 (1%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYSYMGNEISYPLKPFLV
Sbjct: 192 DQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLV 250

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 122
           E CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK
Sbjct: 251 ESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLK 290

p35 is a neuron specific activator of CDK5. The complex p35/CDK5 is required for neurite outgrowth and cortical lamination. Involved in dendritic spine morphogenesis by mediating the EFNA1-EPHA4 signaling. Activator of TPKII.

Rattus norvegicus (taxid: 10116)

>sp|P61809|CD5R1_MOUSE Cyclin-dependent kinase 5 activator 1 OS=Mus musculus GN=Cdk5r1 PE=1 SV=1

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 67/100 (67%), Positives = 85/100 (85%), Gaps = 1/100 (1%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYSYMGNEISYPLKPFLV
Sbjct: 192 DQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLV 250

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 122
           E CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK
Sbjct: 251 ESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLK 290

p35 is a neuron specific activator of CDK5. The complex p35/CDK5 is required for neurite outgrowth and cortical lamination. Involved in dendritic spine morphogenesis by mediating the EFNA1-EPHA4 signaling. Activator of TPKII.

Mus musculus (taxid: 10090)

>sp|Q15078|CD5R1_HUMAN Cyclin-dependent kinase 5 activator 1 OS=Homo sapiens GN=CDK5R1 PE=1 SV=1

 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 67/100 (67%), Positives = 85/100 (85%), Gaps = 1/100 (1%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYSYMGNEISYPLKPFLV
Sbjct: 192 DQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLV 250

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 122
           E CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK
Sbjct: 251 ESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLK 290

p35 is a neuron specific activator of CDK5. The complex p35/CDK5 is required for neurite outgrowth and cortical lamination. Involved in dendritic spine morphogenesis by mediating the EFNA1-EPHA4 signaling. Activator of TPKII.

Homo sapiens (taxid: 9606)

>sp|Q4KYY2|CD5R1_SPECI Cyclin-dependent kinase 5 activator 1 OS=Spermophilus citellus GN=CDK5R1 PE=2 SV=1

 Score =  147 bits (372), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 66/100 (66%), Positives = 84/100 (84%), Gaps = 1/100 (1%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYSY+GNEISYPLKPFLV
Sbjct: 192 DQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYVGNEISYPLKPFLV 250

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 122
           E CKE FWDRCL ++N MSS ML+INA+P +FT+ F++LK
Sbjct: 251 ESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQAFSDLK 290

p35 is a neuron specific activator of CDK5. The complex p35/CDK5 is required for neurite outgrowth and cortical lamination. Involved in dendritic spine morphogenesis by mediating the EFNA1-EPHA4 signaling. Activator of TPKII.

Spermophilus citellus (taxid: 9997)

>sp|Q13319|CD5R2_HUMAN Cyclin-dependent kinase 5 activator 2 OS=Homo sapiens GN=CDK5R2 PE=1 SV=1

 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 64/100 (64%), Positives = 81/100 (81%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           D AFI PAN+VFVY+L RE + GD++ S ++LQA  LTCLYL+YSYMGNEISYPLKPFLV
Sbjct: 227 DQAFITPANLVFVYLLCRESLRGDELASAAELQAAFLTCLYLAYSYMGNEISYPLKPFLV 286

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 122
           E  KE+FW RCL ++  +S  MLR+NA+P FFT++F +LK
Sbjct: 287 EPDKERFWQRCLRLIQRLSPQMLRLNADPHFFTQVFQDLK 326

Activator of CDK5/TPKII.

Homo sapiens (taxid: 9606)

>sp|Q22695|CD5R1_CAEEL Cyclin-dependent kinase 5 activator 1 OS=Caenorhabditis elegans GN=cdka-1 PE=2 SV=2

 Score =  126 bits (316), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 55/107 (51%), Positives = 83/107 (77%), Gaps = 2/107 (1%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDK--IDSESQLQAVVLTCLYLSYSYMGNEISYPLKPF 80
           D+AFINPAN+VF+++LVR+++  ++  I +  +L A +L+CLY+SYSYMGNEISYPLKPF
Sbjct: 249 DIAFINPANLVFIFLLVRDVLPDERHLIHTLEELHAWILSCLYVSYSYMGNEISYPLKPF 308

Query: 81  LVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTS 127
           L+ + +  FW+RC+ +V + S  ML +N+   FF+E+FT+LK C +S
Sbjct: 309 LIGNDRNTFWNRCVAMVTSHSRQMLLLNSSSTFFSEVFTDLKHCSSS 355

Activator of a CDK5/TPKII-like kinase.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
380029934	606	PREDICTED: uncharacterized protein LOC10	0.824	0.186	0.788	3e-48
157107174	496	cyclin-dependent kinase 5 activator [Aed	0.744	0.205	0.864	6e-47
383848540	360	PREDICTED: cyclin-dependent kinase 5 act	0.802	0.305	0.817	1e-46
350402354	360	PREDICTED: cyclin-dependent kinase 5 act	0.802	0.305	0.8	1e-46
328780175	360	PREDICTED: cyclin-dependent kinase 5 act	0.802	0.305	0.8	2e-46
118788678	164	AGAP008533-PA [Anopheles gambiae str. PE	0.795	0.664	0.827	5e-46
340711405	360	PREDICTED: cyclin-dependent kinase 5 act	0.802	0.305	0.791	5e-46
357606455	344	putative cyclin-dependent kinase 5 activ	0.759	0.302	0.836	7e-46
195146852	441	GL18974 [Drosophila persimilis] gi|19410	0.781	0.242	0.805	1e-45
5051998	474	Cdk5 activator-like protein [Drosophila	0.781	0.225	0.805	4e-45

>gi|380029934|ref|XP_003698618.1| PREDICTED: uncharacterized protein LOC100863474 [Apis florea]

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 93/118 (78%), Positives = 101/118 (85%), Gaps = 5/118 (4%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           DVAFINPANVVF+YMLVRELVDGD+  SE +LQA VLTCLYLSYSYMGNEISYPLKPFL+
Sbjct: 477 DVAFINPANVVFIYMLVRELVDGDEA-SERELQATVLTCLYLSYSYMGNEISYPLKPFLI 535

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGT----STPSTGLAPS 136
           ED K+KFWDRCL IVN +SS MLRIN+EPGFFTE+FTELKACG     S P TGL  S
Sbjct: 536 EDSKDKFWDRCLLIVNRLSSEMLRINSEPGFFTEVFTELKACGAGDRGSLPGTGLERS 593

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157107174|ref|XP_001649657.1| cyclin-dependent kinase 5 activator [Aedes aegypti] gi|108879638|gb|EAT43863.1| AAEL004717-PA [Aedes aegypti]

 Score =  191 bits (486), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 89/103 (86%), Positives = 96/103 (93%), Gaps = 1/103 (0%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           DVAFINPANVVFVYMLVRELVDG++   E++LQA VLTCLYLSYSYMGNEISYPLKPFLV
Sbjct: 378 DVAFINPANVVFVYMLVRELVDGEET-KEAELQAAVLTCLYLSYSYMGNEISYPLKPFLV 436

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACG 125
           ED K+KFWDRCL IVN +SS+MLRINAEPGFFTEIFTELKACG
Sbjct: 437 EDSKDKFWDRCLLIVNRLSSNMLRINAEPGFFTEIFTELKACG 479

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848540|ref|XP_003699907.1| PREDICTED: cyclin-dependent kinase 5 activator 1-like [Megachile rotundata]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 94/115 (81%), Positives = 100/115 (86%), Gaps = 5/115 (4%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           DVAFINPANVVFVYMLVRELVDGD+  SE +LQA VLTCLYLSYSYMGNEISYPLKPFLV
Sbjct: 231 DVAFINPANVVFVYMLVRELVDGDEA-SERELQATVLTCLYLSYSYMGNEISYPLKPFLV 289

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGT----STPSTGL 133
           ED K+KFWDRCL IVN +SS MLRIN+EPGFFTEIFTELKACG     S P +GL
Sbjct: 290 EDSKDKFWDRCLLIVNRLSSKMLRINSEPGFFTEIFTELKACGAGDRGSLPGSGL 344

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402354|ref|XP_003486455.1| PREDICTED: cyclin-dependent kinase 5 activator 1-like [Bombus impatiens]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/115 (80%), Positives = 100/115 (86%), Gaps = 5/115 (4%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           DVAFINPANVVF+YMLVRELVDGD+  SE +LQA VLTCLYLSYSYMGNEISYPLKPFL+
Sbjct: 231 DVAFINPANVVFIYMLVRELVDGDEA-SERELQATVLTCLYLSYSYMGNEISYPLKPFLI 289

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGT----STPSTGL 133
           ED K+KFWDRCL IVN +SS MLRIN+EPGFFTE+FTELKACG     S P TGL
Sbjct: 290 EDSKDKFWDRCLLIVNRLSSEMLRINSEPGFFTEVFTELKACGAGDRGSLPGTGL 344

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780175|ref|XP_394967.4| PREDICTED: cyclin-dependent kinase 5 activator 1 [Apis mellifera]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/115 (80%), Positives = 100/115 (86%), Gaps = 5/115 (4%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           DVAFINPANVVF+YMLVRELVDGD+  SE +LQA VLTCLYLSYSYMGNEISYPLKPFL+
Sbjct: 231 DVAFINPANVVFIYMLVRELVDGDEA-SERELQATVLTCLYLSYSYMGNEISYPLKPFLI 289

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGT----STPSTGL 133
           ED K+KFWDRCL IVN +SS MLRIN+EPGFFTE+FTELKACG     S P TGL
Sbjct: 290 EDSKDKFWDRCLLIVNRLSSEMLRINSEPGFFTEVFTELKACGAGDRGSLPGTGL 344

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118788678|ref|XP_316905.3| AGAP008533-PA [Anopheles gambiae str. PEST] gi|116122861|gb|EAA12555.4| AGAP008533-PA [Anopheles gambiae str. PEST]

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 91/110 (82%), Positives = 99/110 (90%), Gaps = 1/110 (0%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           DVAFINPANVVFVYMLVRELVDG++   E++LQA VLTCLYLSYSYMGNEISYPLKPFLV
Sbjct: 47  DVAFINPANVVFVYMLVRELVDGEET-KEAELQAAVLTCLYLSYSYMGNEISYPLKPFLV 105

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTSTPSTG 132
           ED K+KFWDRCL IVN +SS+MLRINAEPGFFTEIFTELKACG ST +  
Sbjct: 106 EDSKDKFWDRCLLIVNRLSSNMLRINAEPGFFTEIFTELKACGMSTNANA 155

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711405|ref|XP_003394266.1| PREDICTED: cyclin-dependent kinase 5 activator 1-like [Bombus terrestris]

 Score =  188 bits (478), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 91/115 (79%), Positives = 99/115 (86%), Gaps = 5/115 (4%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           DVAFINPANVVF+YMLVRELVDGD+  SE +LQ  VLTCLYLSYSYMGNEISYPLKPFL+
Sbjct: 231 DVAFINPANVVFIYMLVRELVDGDEA-SERELQVTVLTCLYLSYSYMGNEISYPLKPFLI 289

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGT----STPSTGL 133
           ED K+KFWDRCL IVN +SS MLRIN+EPGFFTE+FTELKACG     S P TGL
Sbjct: 290 EDSKDKFWDRCLLIVNRLSSEMLRINSEPGFFTEVFTELKACGAGDRGSLPGTGL 344

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357606455|gb|EHJ65068.1| putative cyclin-dependent kinase 5 activator [Danaus plexippus]

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 87/104 (83%), Positives = 96/104 (92%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           DVAFINPANVVFVYMLVRELVDG++I    +LQAVVLTCLYLSYSYMGNEISYPLKPFLV
Sbjct: 219 DVAFINPANVVFVYMLVRELVDGERIARPQELQAVVLTCLYLSYSYMGNEISYPLKPFLV 278

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGT 126
           ED K+KFWDRCL IV+ +S +MLRIN+EPGFFTE+FTELKACGT
Sbjct: 279 EDSKDKFWDRCLLIVDRLSFNMLRINSEPGFFTEVFTELKACGT 322

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195146852|ref|XP_002014398.1| GL18974 [Drosophila persimilis] gi|194106351|gb|EDW28394.1| GL18974 [Drosophila persimilis]

 Score =  187 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 87/108 (80%), Positives = 95/108 (87%), Gaps = 1/108 (0%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           DVAFINPANVVFVYMLVR+LVDG++   ES LQA VLTCLYLSYSYMGNEISYPLKPFLV
Sbjct: 326 DVAFINPANVVFVYMLVRDLVDGEE-SKESDLQASVLTCLYLSYSYMGNEISYPLKPFLV 384

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTSTPS 130
           ED K+KFWDRCL IVN +S  ML+INAEPGFFTE+FTELK+CG   PS
Sbjct: 385 EDSKDKFWDRCLVIVNKLSDKMLKINAEPGFFTEVFTELKSCGQYHPS 432

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|5051998|gb|AAD38395.1| Cdk5 activator-like protein [Drosophila melanogaster]

 Score =  186 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 87/108 (80%), Positives = 94/108 (87%), Gaps = 1/108 (0%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           DVAFINPANVVFVYMLVRELV G++   ES LQA VLTCLYLSYSYMGNEISYPLKPFLV
Sbjct: 360 DVAFINPANVVFVYMLVRELVSGEE-SKESDLQASVLTCLYLSYSYMGNEISYPLKPFLV 418

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTSTPS 130
           ED KEKFWDRCL IVN +S  ML+INAEPGFFTE+FTELK+CG   P+
Sbjct: 419 EDSKEKFWDRCLVIVNKLSDKMLKINAEPGFFTEVFTELKSCGQYHPT 466

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
FB|FBgn0027491	474	Cdk5alpha "Cdk5 activator-like	0.781	0.225	0.805	1.2e-42
ZFIN|ZDB-GENE-060503-468	317	si:dkeyp-92c9.2 "si:dkeyp-92c9	0.751	0.324	0.699	3.5e-36
MGI|MGI:1330828	369	Cdk5r2 "cyclin-dependent kinas	0.832	0.308	0.614	1.3e-34
RGD|1562530	289	Cdk5r2 "cyclin-dependent kinas	0.832	0.394	0.614	1.3e-34
UNIPROTKB|Q28199	307	CDK5R1 "Cyclin-dependent kinas	0.722	0.322	0.67	1.7e-34
UNIPROTKB|Q15078	307	CDK5R1 "Cyclin-dependent kinas	0.722	0.322	0.67	1.7e-34
UNIPROTKB|F2Z529	307	CDK5R1 "Uncharacterized protei	0.722	0.322	0.67	1.7e-34
MGI|MGI:101764	307	Cdk5r1 "cyclin-dependent kinas	0.722	0.322	0.67	1.7e-34
RGD|629472	307	Cdk5r1 "cyclin-dependent kinas	0.722	0.322	0.67	1.7e-34
UNIPROTKB|E2RJ45	307	CDK5R1 "Uncharacterized protei	0.722	0.322	0.66	2.2e-34

FB|FBgn0027491 Cdk5alpha "Cdk5 activator-like protein" [Drosophila melanogaster (taxid:7227)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 87/108 (80%), Positives = 94/108 (87%)

Query:    23 DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
             DVAFINPANVVFVYMLVRELV G++   ES LQA VLTCLYLSYSYMGNEISYPLKPFLV
Sbjct:   360 DVAFINPANVVFVYMLVRELVSGEE-SKESDLQASVLTCLYLSYSYMGNEISYPLKPFLV 418

Query:    83 EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTSTPS 130
             ED KEKFWDRCL IVN +S  ML+INAEPGFFTE+FTELK+CG   P+
Sbjct:   419 EDSKEKFWDRCLVIVNKLSDKMLKINAEPGFFTEVFTELKSCGQYHPT 466

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0030426 "growth cone" evidence=IDA

GO:0007409 "axonogenesis" evidence=IGI;IMP

GO:0016533 "cyclin-dependent protein kinase 5 holoenzyme complex" evidence=IPI

GO:0030424 "axon" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0016534 "cyclin-dependent protein kinase 5 activator activity" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0035011 "melanotic encapsulation of foreign target" evidence=IMP

GO:0070059 "intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress" evidence=IGI

ZFIN|ZDB-GENE-060503-468 si:dkeyp-92c9.2 "si:dkeyp-92c9.2" [Danio rerio (taxid:7955)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 72/103 (69%), Positives = 87/103 (84%)

Query:    23 DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
             D AF+ PANVVFVYML R++VDGD + SE +LQA++LTCLYLSYSYMGNEISYPLKPFLV
Sbjct:   202 DQAFVTPANVVFVYMLCRDVVDGDSVSSEHELQAILLTCLYLSYSYMGNEISYPLKPFLV 261

Query:    83 EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACG 125
             E  KE FWDRCL I++  S+ MLRINA+P FFT++F +LK+ G
Sbjct:   262 EAGKEAFWDRCLAIIDVTSAKMLRINADPHFFTQVFADLKSEG 304

GO:0016533 "cyclin-dependent protein kinase 5 holoenzyme complex" evidence=IEA

GO:0016534 "cyclin-dependent protein kinase 5 activator activity" evidence=IEA

MGI|MGI:1330828 Cdk5r2 "cyclin-dependent kinase 5, regulatory subunit 2 (p39)" [Mus musculus (taxid:10090)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 70/114 (61%), Positives = 88/114 (77%)

Query:    23 DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
             D AFI PAN+VFVY+L RE + GD++ S ++LQA  LTCLYL+YSYMGNEISYPLKPFLV
Sbjct:   227 DQAFITPANLVFVYLLCRESLRGDELASAAELQAAFLTCLYLAYSYMGNEISYPLKPFLV 286

Query:    83 EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTSTPSTGLAPS 136
             E  KE+FW RCL ++  +S  MLR+NA+P FFT++F +LK  G +  STG  PS
Sbjct:   287 EPDKERFWQRCLRLIQRLSPQMLRLNADPHFFTQVFQDLKNEGEAAASTGGPPS 340

GO:0001764 "neuron migration" evidence=IGI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016533 "cyclin-dependent protein kinase 5 holoenzyme complex" evidence=IEA

GO:0016534 "cyclin-dependent protein kinase 5 activator activity" evidence=IMP;TAS

GO:0021549 "cerebellum development" evidence=IGI

GO:0021722 "superior olivary nucleus maturation" evidence=IGI

GO:0021766 "hippocampus development" evidence=IGI

GO:0021819 "layer formation in cerebral cortex" evidence=IGI

GO:0045860 "positive regulation of protein kinase activity" evidence=IGI

GO:0045956 "positive regulation of calcium ion-dependent exocytosis" evidence=IDA

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=TAS

RGD|1562530 Cdk5r2 "cyclin-dependent kinase 5, regulatory subunit 2 (p39)" [Rattus norvegicus (taxid:10116)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 70/114 (61%), Positives = 88/114 (77%)

Query:    23 DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
             D AFI PAN+VFVY+L RE + GD++ S ++LQA  LTCLYL+YSYMGNEISYPLKPFLV
Sbjct:   148 DQAFITPANLVFVYLLCRESLRGDELASAAELQAAFLTCLYLAYSYMGNEISYPLKPFLV 207

Query:    83 EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTSTPSTGLAPS 136
             E  KE+FW RCL ++  +S  MLR+NA+P FFT++F +LK  G +  STG  PS
Sbjct:   208 EPDKERFWQRCLRLIQRLSPQMLRLNADPHFFTQVFQDLKNEGEAAASTGGPPS 261

GO:0001764 "neuron migration" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0016533 "cyclin-dependent protein kinase 5 holoenzyme complex" evidence=IEA

GO:0016534 "cyclin-dependent protein kinase 5 activator activity" evidence=IEA;ISO

GO:0021549 "cerebellum development" evidence=ISO

GO:0021722 "superior olivary nucleus maturation" evidence=ISO

GO:0021766 "hippocampus development" evidence=ISO

GO:0021819 "layer formation in cerebral cortex" evidence=ISO

GO:0045860 "positive regulation of protein kinase activity" evidence=ISO

GO:0045956 "positive regulation of calcium ion-dependent exocytosis" evidence=ISO

UNIPROTKB|Q28199 CDK5R1 "Cyclin-dependent kinase 5 activator 1" [Bos taurus (taxid:9913)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 67/100 (67%), Positives = 85/100 (85%)

Query:    23 DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
             D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYSYMGNEISYPLKPFLV
Sbjct:   192 DQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLV 250

Query:    83 EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 122
             E CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK
Sbjct:   251 ESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLK 290

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=ISS

GO:0014069 "postsynaptic density" evidence=ISS

GO:0061001 "regulation of dendritic spine morphogenesis" evidence=ISS

GO:0048013 "ephrin receptor signaling pathway" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0045296 "cadherin binding" evidence=ISS

GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0007413 "axonal fasciculation" evidence=ISS

GO:0007411 "axon guidance" evidence=ISS

GO:0043525 "positive regulation of neuron apoptotic process" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0043025 "neuronal cell body" evidence=ISS

GO:0031175 "neuron projection development" evidence=ISS

GO:0030426 "growth cone" evidence=ISS

GO:0030424 "axon" evidence=ISS

GO:0030182 "neuron differentiation" evidence=ISS

GO:0043292 "contractile fiber" evidence=ISS

GO:0031594 "neuromuscular junction" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0009790 "embryo development" evidence=ISS

GO:0043539 "protein serine/threonine kinase activator activity" evidence=ISS

GO:0043197 "dendritic spine" evidence=ISS

GO:0035235 "ionotropic glutamate receptor signaling pathway" evidence=ISS

GO:0030425 "dendrite" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0007158 "neuron cell-cell adhesion" evidence=ISS

GO:0001764 "neuron migration" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0090314 "positive regulation of protein targeting to membrane" evidence=IEA

GO:0070507 "regulation of microtubule cytoskeleton organization" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0033136 "serine phosphorylation of STAT3 protein" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0021819 "layer formation in cerebral cortex" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0021722 "superior olivary nucleus maturation" evidence=IEA

GO:0021549 "cerebellum development" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IEA

GO:0016534 "cyclin-dependent protein kinase 5 activator activity" evidence=IEA

GO:0016533 "cyclin-dependent protein kinase 5 holoenzyme complex" evidence=IEA

UNIPROTKB|Q15078 CDK5R1 "Cyclin-dependent kinase 5 activator 1" [Homo sapiens (taxid:9606)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 67/100 (67%), Positives = 85/100 (85%)

Query:    23 DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
             D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYSYMGNEISYPLKPFLV
Sbjct:   192 DQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLV 250

Query:    83 EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 122
             E CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK
Sbjct:   251 ESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLK 290

GO:0016533 "cyclin-dependent protein kinase 5 holoenzyme complex" evidence=IEA

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=IEA

GO:0016534 "cyclin-dependent protein kinase 5 activator activity" evidence=IEA

GO:0021549 "cerebellum development" evidence=IEA

GO:0021722 "superior olivary nucleus maturation" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0021819 "layer formation in cerebral cortex" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0033136 "serine phosphorylation of STAT3 protein" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0070507 "regulation of microtubule cytoskeleton organization" evidence=IEA

GO:0090314 "positive regulation of protein targeting to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045296 "cadherin binding" evidence=ISS

GO:0007158 "neuron cell-cell adhesion" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0030425 "dendrite" evidence=ISS

GO:0035235 "ionotropic glutamate receptor signaling pathway" evidence=ISS

GO:0043197 "dendritic spine" evidence=ISS

GO:0043539 "protein serine/threonine kinase activator activity" evidence=ISS;IDA

GO:0005737 "cytoplasm" evidence=ISS

GO:0009790 "embryo development" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0031594 "neuromuscular junction" evidence=ISS

GO:0043292 "contractile fiber" evidence=ISS

GO:0030182 "neuron differentiation" evidence=ISS

GO:0030424 "axon" evidence=ISS

GO:0030426 "growth cone" evidence=ISS

GO:0031175 "neuron projection development" evidence=ISS

GO:0043025 "neuronal cell body" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0043525 "positive regulation of neuron apoptotic process" evidence=ISS

GO:0007411 "axon guidance" evidence=ISS;TAS

GO:0007413 "axonal fasciculation" evidence=ISS

GO:0007420 "brain development" evidence=ISS;NAS

GO:0001764 "neuron migration" evidence=ISS

GO:0045664 "regulation of neuron differentiation" evidence=NAS

GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=ISS

GO:0019901 "protein kinase binding" evidence=IPI

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IDA

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IDA

GO:0048013 "ephrin receptor signaling pathway" evidence=ISS

GO:0014069 "postsynaptic density" evidence=ISS

GO:0061001 "regulation of dendritic spine morphogenesis" evidence=ISS

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=TAS

GO:0004672 "protein kinase activity" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|F2Z529 CDK5R1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 67/100 (67%), Positives = 85/100 (85%)

Query:    23 DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
             D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYSYMGNEISYPLKPFLV
Sbjct:   192 DQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLV 250

Query:    83 EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 122
             E CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK
Sbjct:   251 ESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLK 290

GO:0090314 "positive regulation of protein targeting to membrane" evidence=IEA

GO:0070507 "regulation of microtubule cytoskeleton organization" evidence=IEA

GO:0061001 "regulation of dendritic spine morphogenesis" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0033136 "serine phosphorylation of STAT3 protein" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0021819 "layer formation in cerebral cortex" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0021722 "superior olivary nucleus maturation" evidence=IEA

GO:0021549 "cerebellum development" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IEA

GO:0016534 "cyclin-dependent protein kinase 5 activator activity" evidence=IEA

GO:0007413 "axonal fasciculation" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007158 "neuron cell-cell adhesion" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0016533 "cyclin-dependent protein kinase 5 holoenzyme complex" evidence=IEA

MGI|MGI:101764 Cdk5r1 "cyclin-dependent kinase 5, regulatory subunit 1 (p35)" [Mus musculus (taxid:10090)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 67/100 (67%), Positives = 85/100 (85%)

Query:    23 DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
             D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYSYMGNEISYPLKPFLV
Sbjct:   192 DQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLV 250

Query:    83 EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 122
             E CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK
Sbjct:   251 ESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLK 290

GO:0001764 "neuron migration" evidence=IGI;IDA

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISO

GO:0005509 "calcium ion binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0007049 "cell cycle" evidence=ISO

GO:0007158 "neuron cell-cell adhesion" evidence=IMP

GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=ISO

GO:0007411 "axon guidance" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0007420 "brain development" evidence=IMP

GO:0008092 "cytoskeletal protein binding" evidence=TAS

GO:0009790 "embryo development" evidence=ISO

GO:0014069 "postsynaptic density" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016301 "kinase activity" evidence=ISO

GO:0016310 "phosphorylation" evidence=IEA

GO:0016533 "cyclin-dependent protein kinase 5 holoenzyme complex" evidence=ISO

GO:0016534 "cyclin-dependent protein kinase 5 activator activity" evidence=ISO;IMP;TAS

GO:0018105 "peptidyl-serine phosphorylation" evidence=ISO

GO:0018107 "peptidyl-threonine phosphorylation" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0021549 "cerebellum development" evidence=IGI;IMP

GO:0021722 "superior olivary nucleus maturation" evidence=IGI

GO:0021766 "hippocampus development" evidence=IGI

GO:0021799 "cerebral cortex radially oriented cell migration" evidence=IMP

GO:0021819 "layer formation in cerebral cortex" evidence=IGI

GO:0030182 "neuron differentiation" evidence=ISO

GO:0030424 "axon" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0030426 "growth cone" evidence=ISO

GO:0030517 "negative regulation of axon extension" evidence=IGI

GO:0031175 "neuron projection development" evidence=ISO

GO:0031594 "neuromuscular junction" evidence=ISO

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IMP

GO:0033136 "serine phosphorylation of STAT3 protein" evidence=IDA

GO:0035235 "ionotropic glutamate receptor signaling pathway" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043197 "dendritic spine" evidence=ISO

GO:0043292 "contractile fiber" evidence=ISO

GO:0043525 "positive regulation of neuron apoptotic process" evidence=ISO

GO:0043539 "protein serine/threonine kinase activator activity" evidence=ISO

GO:0045296 "cadherin binding" evidence=ISO

GO:0045860 "positive regulation of protein kinase activity" evidence=IGI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0046875 "ephrin receptor binding" evidence=ISO

GO:0048013 "ephrin receptor signaling pathway" evidence=IMP

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0061001 "regulation of dendritic spine morphogenesis" evidence=IMP

GO:0070507 "regulation of microtubule cytoskeleton organization" evidence=IMP

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=ISO;TAS

GO:0090314 "positive regulation of protein targeting to membrane" evidence=IDA

RGD|629472 Cdk5r1 "cyclin-dependent kinase 5, regulatory subunit 1 (p35)" [Rattus norvegicus (taxid:10116)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 67/100 (67%), Positives = 85/100 (85%)

Query:    23 DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
             D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYSYMGNEISYPLKPFLV
Sbjct:   192 DQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLV 250

Query:    83 EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 122
             E CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK
Sbjct:   251 ESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLK 290

GO:0001764 "neuron migration" evidence=ISO;ISS

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0007049 "cell cycle" evidence=IDA

GO:0007158 "neuron cell-cell adhesion" evidence=ISO;ISS

GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=IDA

GO:0007411 "axon guidance" evidence=ISO;ISS

GO:0007413 "axonal fasciculation" evidence=ISO;ISS

GO:0007420 "brain development" evidence=IEP;ISO;ISS

GO:0009790 "embryo development" evidence=IDA

GO:0014069 "postsynaptic density" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0016301 "kinase activity" evidence=IDA

GO:0016533 "cyclin-dependent protein kinase 5 holoenzyme complex" evidence=IDA;TAS

GO:0016534 "cyclin-dependent protein kinase 5 activator activity" evidence=ISO;IDA

GO:0018105 "peptidyl-serine phosphorylation" evidence=ISO

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IEA;ISO

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0021549 "cerebellum development" evidence=IEA;ISO

GO:0021722 "superior olivary nucleus maturation" evidence=IEA;ISO

GO:0021766 "hippocampus development" evidence=IEA;ISO

GO:0021799 "cerebral cortex radially oriented cell migration" evidence=ISO

GO:0021819 "layer formation in cerebral cortex" evidence=IEA;ISO

GO:0030182 "neuron differentiation" evidence=IDA

GO:0030424 "axon" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0030426 "growth cone" evidence=IDA

GO:0030517 "negative regulation of axon extension" evidence=ISO

GO:0031175 "neuron projection development" evidence=IMP

GO:0031594 "neuromuscular junction" evidence=IDA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA;ISO

GO:0033136 "serine phosphorylation of STAT3 protein" evidence=IEA;ISO

GO:0035235 "ionotropic glutamate receptor signaling pathway" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043197 "dendritic spine" evidence=IDA

GO:0043292 "contractile fiber" evidence=IDA

GO:0043525 "positive regulation of neuron apoptotic process" evidence=IDA

GO:0043539 "protein serine/threonine kinase activator activity" evidence=ISO;IDA

GO:0045296 "cadherin binding" evidence=IDA

GO:0045860 "positive regulation of protein kinase activity" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0046875 "ephrin receptor binding" evidence=IPI

GO:0048013 "ephrin receptor signaling pathway" evidence=ISO;ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;ISO

GO:0048675 "axon extension" evidence=TAS

GO:0061001 "regulation of dendritic spine morphogenesis" evidence=ISO;ISS

GO:0070507 "regulation of microtubule cytoskeleton organization" evidence=IEA;ISO

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IDA

GO:0090314 "positive regulation of protein targeting to membrane" evidence=IEA;ISO

UNIPROTKB|E2RJ45 CDK5R1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 66/100 (66%), Positives = 85/100 (85%)

Query:    23 DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
             D  FI PANVVF+YML R+++  + + S+ +LQA++LTCLYLSYSYMGNEISYPLKPFLV
Sbjct:   192 DQGFITPANVVFLYMLCRDVISSE-VGSDHELQAILLTCLYLSYSYMGNEISYPLKPFLV 250

Query:    83 EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 122
             E CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK
Sbjct:   251 ESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLK 290

GO:0090314 "positive regulation of protein targeting to membrane" evidence=IEA

GO:0070507 "regulation of microtubule cytoskeleton organization" evidence=IEA

GO:0061001 "regulation of dendritic spine morphogenesis" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0033136 "serine phosphorylation of STAT3 protein" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0021819 "layer formation in cerebral cortex" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0021722 "superior olivary nucleus maturation" evidence=IEA

GO:0021549 "cerebellum development" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IEA

GO:0016534 "cyclin-dependent protein kinase 5 activator activity" evidence=IEA

GO:0007413 "axonal fasciculation" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007158 "neuron cell-cell adhesion" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0016533 "cyclin-dependent protein kinase 5 holoenzyme complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q22695	CD5R1_CAEEL	No assigned EC number	0.5140	0.7664	0.2949	yes	N/A
O35926	CD5R2_MOUSE	No assigned EC number	0.6106	0.8248	0.3062	yes	N/A
Q15078	CD5R1_HUMAN	No assigned EC number	0.67	0.7226	0.3224	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	137
pfam03261	314	pfam03261, CDK5_activator, Cyclin-dependent kinase	2e-66

>gnl|CDD|217461 pfam03261, CDK5_activator, Cyclin-dependent kinase 5 activator protein

 Score =  203 bits (518), Expect = 2e-66
 Identities = 72/105 (68%), Positives = 90/105 (85%), Gaps = 1/105 (0%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           D AFI PANVVFVY+L R+++ G+ + +E +LQA +LTCLYLSYSYMGNEISYPLKPFLV
Sbjct: 210 DQAFITPANVVFVYLLCRDVLSGE-VATEHELQAWLLTCLYLSYSYMGNEISYPLKPFLV 268

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTS 127
           E+ KE FWDRCL I+N++SS MLRINA+P FFT++FT+LK  G+S
Sbjct: 269 ENDKEAFWDRCLAIINSLSSKMLRINADPHFFTQVFTDLKNEGSS 313

Length = 314

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
KOG3932|consensus	357		100.0
PF03261	346	CDK5_activator: Cyclin-dependent kinase 5 activato	100.0

>KOG3932|consensus

Probab=100.00  E-value=1.5e-72  Score=478.55  Aligned_cols=111  Identities=65%  Similarity=1.124  Sum_probs=108.8

Q ss_pred             cccccccccccCchhHHHHHHHHhhccCCcCCCHHHHHHHHHHHHHHhhhccCccccccCcccccccchhHHhHHHHHHH
Q psy7170          18 PHATVDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIV   97 (137)
Q Consensus        18 lQGWQD~aFI~PANvVFvYmL~rd~v~~~~v~se~ELqa~vLTCLYLsYSYMGNEISYPLKPFLve~~ke~FW~rcl~Ii   97 (137)
                      ||||||||||||||||||||||||+++||+++|++||||++|||||||||||||||||||||||||++||+||||||.||
T Consensus       238 LQGWQD~aFInPANlVFvylLvRdvlsg~e~~s~~eLqA~~LtCLYlsYSYMGNEISYPLKPFLVe~dke~FWdRCl~~v  317 (357)
T KOG3932|consen  238 LQGWQDQAFINPANLVFVYLLVRDVLSGEEIHSLEELQAWILTCLYLSYSYMGNEISYPLKPFLVENDKETFWDRCLAMV  317 (357)
T ss_pred             hhhccccccccchheehhhhhHHhhcCchhhccHHHHHHHHHHHHHHHHHhhcccccccccceeecccHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccchhccCCcchhHHHHHHHHhcCCCC
Q psy7170          98 NNMSSSMLRINAEPGFFTEIFTELKACGTST  128 (137)
Q Consensus        98 ~~~S~kMLriNadp~fFTevF~eLK~~~~~~  128 (137)
                      |++|.+||+||||||||||||+|||+|+.++
T Consensus       318 n~lS~qML~lNadp~fFteVFtdLK~cs~~~  348 (357)
T KOG3932|consen  318 NSLSRQMLLLNADPHFFTEVFTDLKNCSSSE  348 (357)
T ss_pred             HHhhHHHhhhcCCCchHHHHHHHhhhcccch
Confidence            9999999999999999999999999996654

>PF03261 CDK5_activator: Cyclin-dependent kinase 5 activator protein; InterPro: IPR004944 These proteins are neuron specific activators of cyclin-dependent kinase 5 (CDK5) []

Probab=100.00  E-value=6.3e-72  Score=475.04  Aligned_cols=111  Identities=69%  Similarity=1.156  Sum_probs=90.5

Q ss_pred             ccccccccccccCchhHHHHHHHHhhccCCcCCCHHHHHHHHHHHHHHhhhccCccccccCcccccccchhHHhHHHHHH
Q psy7170          17 GPHATVDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHI   96 (137)
Q Consensus        17 ~lQGWQD~aFI~PANvVFvYmL~rd~v~~~~v~se~ELqa~vLTCLYLsYSYMGNEISYPLKPFLve~~ke~FW~rcl~I   96 (137)
                      =||||||||||||||||||||||||+|+++ |+||+||||+||||||||||||||||||||||||||++||+||||||+|
T Consensus       236 Llqgwqd~~fi~pan~vf~yml~r~~~~~~-~~~~~~l~~~~l~cly~sysy~gneisyplkpflv~~~~~~fw~~~~~~  314 (346)
T PF03261_consen  236 LLQGWQDQAFINPANVVFVYMLCRDVVSGE-VSSERELQAIVLTCLYLSYSYMGNEISYPLKPFLVEESKEAFWDRCLSI  314 (346)
T ss_dssp             HHTTS-SS-S--HHHHHHHHHHHHHHS-TT---SHHHHHHHHHHHHHHHHHHH-SSS---SGGG--SS-HHHHHHHHHHH
T ss_pred             HhccccccceeccchhhhhHHHHHHhhccc-cCCHHHHHHHHHHHHHHHhhhcCcccccccCCeeecccHHHHHHHHHHH
Confidence            389999999999999999999999999885 7999999999999999999999999999999999999999999999999


Q ss_pred             HhhccccchhccCCcchhHHHHHHHHhcCCCC
Q psy7170          97 VNNMSSSMLRINAEPGFFTEIFTELKACGTST  128 (137)
Q Consensus        97 i~~~S~kMLriNadp~fFTevF~eLK~~~~~~  128 (137)
                      ||++|+||||||+|||||||||+|||+||+.+
T Consensus       315 ~~~~s~~ml~~n~~~~~ft~~~~~lk~~~~~~  346 (346)
T PF03261_consen  315 INRLSAKMLRINADPHFFTEVFTDLKNEGQSE  346 (346)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHHHHHTT----
T ss_pred             HHHhhHHHhhhcCCCchHHHHHHHHHhcccCC
Confidence            99999999999999999999999999999753

They form a heterodimer with the catalytic subunit (CDK5) [].; GO: 0016534 cyclin-dependent protein kinase 5 activator activity, 0016533 cyclin-dependent protein kinase 5 holoenzyme complex; PDB: 3O0G_D 1H4L_E 1UNH_D 1UNL_E 1UNG_E.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	137
1ung_D	208	Structural Mechanism For The Inhibition Of Cdk5-P25		4e-37
3o0g_D	149	Crystal Structure Of Cdk5:p25 In Complex With An At		8e-37
1h4l_D	147	Structure And Regulation Of The Cdk5-P25(Nck5a) Com		9e-37

>pdb|1UNG|D Chain D, Structural Mechanism For The Inhibition Of Cdk5-P25 By Roscovitine, Aloisine And Indirubin. Length = 208

Iteration: 1
 Score =  149 bits (376), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 67/100 (67%), Positives = 85/100 (85%), Gaps = 1/100 (1%)
Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYSYMGNEISYPLKPFLV
Sbjct: 93  DQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLV 151
Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 122
           E CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK
Sbjct: 152 ESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLK 191

>pdb|3O0G|D Chain D, Crystal Structure Of Cdk5:p25 In Complex With An Atp Analogue Length = 149

Iteration: 1
 Score =  148 bits (374), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 67/100 (67%), Positives = 85/100 (85%), Gaps = 1/100 (1%)
Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYSYMGNEISYPLKPFLV
Sbjct: 48  DQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLV 106
Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 122
           E CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK
Sbjct: 107 ESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLK 146

>pdb|1H4L|D Chain D, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex Length = 147

Iteration: 1
 Score =  148 bits (374), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 67/100 (67%), Positives = 85/100 (85%), Gaps = 1/100 (1%)
Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYSYMGNEISYPLKPFLV
Sbjct: 46  DQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLV 104
Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 122
           E CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK
Sbjct: 105 ESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLK 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	137
1unl_D	208	Cyclin-dependent kinase 5 activator 1; inhibitor,	1e-60
3o0g_D	149	Cyclin-dependent kinase 5 activator 1; kinase acti	3e-59

>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D* Length = 208

 Score =  184 bits (468), Expect = 1e-60
 Identities = 68/112 (60%), Positives = 86/112 (76%), Gaps = 1/112 (0%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYSYMGNEISYPLKPFLV
Sbjct: 93  DQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLV 151

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTSTPSTGLA 134
           E CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK          L 
Sbjct: 152 ESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLKNESGQEDKKRLL 203

>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1h4l_D Length = 149

 Score =  178 bits (454), Expect = 3e-59
 Identities = 67/102 (65%), Positives = 85/102 (83%), Gaps = 1/102 (0%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYSYMGNEISYPLKPFLV
Sbjct: 48  DQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLV 106

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKAC 124
           E CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK  
Sbjct: 107 ESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLKNE 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
3o0g_D	149	Cyclin-dependent kinase 5 activator 1; kinase acti	100.0
1unl_D	208	Cyclin-dependent kinase 5 activator 1; inhibitor,	100.0

>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D

Probab=100.00  E-value=1.5e-77  Score=463.55  Aligned_cols=107  Identities=63%  Similarity=1.137  Sum_probs=105.0

Q ss_pred             cccccccccccCchhHHHHHHHHhhccCCcCCCHHHHHHHHHHHHHHhhhccCccccccCcccccccchhHHhHHHHHHH
Q psy7170          18 PHATVDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIV   97 (137)
Q Consensus        18 lQGWQD~aFI~PANvVFvYmL~rd~v~~~~v~se~ELqa~vLTCLYLsYSYMGNEISYPLKPFLve~~ke~FW~rcl~Ii   97 (137)
                      ||||||||||||||||||||||||+|+++ ++||+||||+|||||||||||||||||||||||||+++||+|||||++||
T Consensus        43 lQGWQD~~Fi~PanvVFvYmL~r~~v~~~-~~se~eLqa~~lTCLYlsYSYmGNEISYPLKPFlv~~~k~~FW~rcl~ii  121 (149)
T 3o0g_D           43 LQGWQDQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLVESCKEAFWDRCLSVI  121 (149)
T ss_dssp             HHTSCSSCSCCHHHHHHHHHHHHHHSCTT-CCSHHHHHHHHHHHHHHHHHHHCSSSCCCSGGGCCCSCHHHHHHHHHHHH
T ss_pred             HccchhcccccchHHHHHHHHHHHHcccc-cCCHHHHHHHHHHHHHHHHHHhcccccccCcchhhcccHHHHHHHHHHHH
Confidence            79999999999999999999999999866 79999999999999999999999999999999999999999999999999


Q ss_pred             hhccccchhccCCcchhHHHHHHHHhcC
Q psy7170          98 NNMSSSMLRINAEPGFFTEIFTELKACG  125 (137)
Q Consensus        98 ~~~S~kMLriNadp~fFTevF~eLK~~~  125 (137)
                      |++|+||||||+|||||||||+|||++|
T Consensus       122 n~~S~~ML~iN~dp~~Ftevf~eLK~~~  149 (149)
T 3o0g_D          122 NLMSSKMLQINADPHYFTQVFSDLKNES  149 (149)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHTTC
T ss_pred             HhhchhhheecCCccHHHHHHHHHhhcC
Confidence            9999999999999999999999999986

>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D*

Probab=100.00  E-value=5.9e-75  Score=466.54  Aligned_cols=112  Identities=60%  Similarity=1.081  Sum_probs=105.5

Q ss_pred             cccccccccccCchhHHHHHHHHhhccCCcCCCHHHHHHHHHHHHHHhhhccCccccccCcccccccchhHHhHHHHHHH
Q psy7170          18 PHATVDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIV   97 (137)
Q Consensus        18 lQGWQD~aFI~PANvVFvYmL~rd~v~~~~v~se~ELqa~vLTCLYLsYSYMGNEISYPLKPFLve~~ke~FW~rcl~Ii   97 (137)
                      ||||||||||||||||||||||||+|+++ ++||+||||+||||||||||||||||||||||||||++||+|||||+.||
T Consensus        88 LQGWQD~aFI~PaNvVFvYmL~R~~v~~~-~~te~eLqa~vLTCLYlsYSYmGNEISYPLKPFlve~~ke~FWdRCl~ii  166 (208)
T 1unl_D           88 LQGWQDQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLVESCKEAFWDRCLSVI  166 (208)
T ss_dssp             HTTSCSSCSCCHHHHHHHHHHHHHHSCTT-CCCHHHHHHHHHHHHHHHHHHHCSSSCCCSGGGCCSSCHHHHHHHHHHHH
T ss_pred             HccccccccccchhhhhHHHHHHHHcccc-cCCHHHHHHHHHHHHHHHHHhhCccccccCcceeecCCHHHHHHHHHHHH
Confidence            79999999999999999999999999766 79999999999999999999999999999999999999999999999999


Q ss_pred             hhccccchhccCCcchhHHHHHHHHhcCCCCCC
Q psy7170          98 NNMSSSMLRINAEPGFFTEIFTELKACGTSTPS  130 (137)
Q Consensus        98 ~~~S~kMLriNadp~fFTevF~eLK~~~~~~~~  130 (137)
                      |++|+||||||+|||||||||+|||+|+.++.+
T Consensus       167 ~~~S~kML~iN~~p~~Ftevf~eLK~~~~~~~~  199 (208)
T 1unl_D          167 NLMSSKMLQINADPHYFTQVFSDLKNESGQEDK  199 (208)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHTTC-----
T ss_pred             HhhchhhheecCCccHHHHHHHHHHhcccccch
Confidence            999999999999999999999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	137
d1unld_	150	a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human	6e-64

>d1unld_ a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: CDK5 activator 1 (NCK5a, p25)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  190 bits (483), Expect = 6e-64
 Identities = 67/103 (65%), Positives = 85/103 (82%), Gaps = 1/103 (0%)

Query: 23  DVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLV 82
           D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYSYMGNEISYPLKPFLV
Sbjct: 48  DQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLV 106

Query: 83  EDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACG 125
           E CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK   
Sbjct: 107 ESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLKNES 149

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	137
d1unld_	150	CDK5 activator 1 (NCK5a, p25) {Human (Homo sapiens	100.0
d1ay7b_	89	Barstar (barnase inhibitor) {Bacillus amyloliquefa	81.54

>d1unld_ a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: CDK5 activator 1 (NCK5a, p25)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-78  Score=463.30  Aligned_cols=108  Identities=62%  Similarity=1.123  Sum_probs=105.3

Q ss_pred             cccccccccccCchhHHHHHHHHhhccCCcCCCHHHHHHHHHHHHHHhhhccCccccccCcccccccchhHHhHHHHHHH
Q psy7170          18 PHATVDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIV   97 (137)
Q Consensus        18 lQGWQD~aFI~PANvVFvYmL~rd~v~~~~v~se~ELqa~vLTCLYLsYSYMGNEISYPLKPFLve~~ke~FW~rcl~Ii   97 (137)
                      ||||||||||||||||||||||||+|+++ ++||+||||+||||||||||||||||||||||||||++||+|||||+.||
T Consensus        43 LQGWQD~~Fi~PaNvVFvYmL~Re~v~~~-~~se~eLqa~vLtCLYlsYSYmGnEISYPLKPFLve~~k~~FWdRCl~Ii  121 (150)
T d1unld_          43 LQGWQDQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLVESCKEAFWDRCLSVI  121 (150)
T ss_dssp             HTTSCSSCSCCHHHHHHHHHHHHHHSCTT-CCCHHHHHHHHHHHHHHHHHHHCSSSCCCSGGGCCSSCHHHHHHHHHHHH
T ss_pred             HhhhhhccccCccceeehHHHHHHhcCcc-ccCHHHHHHHHHHHHHHHHHhcCcccccCCcceeecccHHHHHHHHHHHH
Confidence            79999999999999999999999999876 69999999999999999999999999999999999999999999999999


Q ss_pred             hhccccchhccCCcchhHHHHHHHHhcCC
Q psy7170          98 NNMSSSMLRINAEPGFFTEIFTELKACGT  126 (137)
Q Consensus        98 ~~~S~kMLriNadp~fFTevF~eLK~~~~  126 (137)
                      |++|+||||||+|||||||||+|||++|.
T Consensus       122 n~~S~kML~iN~dp~fFtevf~dLK~~g~  150 (150)
T d1unld_         122 NLMSSKMLQINADPHYFTQVFSDLKNESG  150 (150)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHTTC-
T ss_pred             HHHhHHHhhhcCCcchHHHHHHHHHhccC
Confidence            99999999999999999999999999974

>d1ay7b_ c.9.1.1 (B:) Barstar (barnase inhibitor) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: Alpha and beta proteins (a/b)
fold: Barstar-like
superfamily: Barstar-related
family: Barstar-related
domain: Barstar (barnase inhibitor)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=81.54  E-value=0.92  Score=29.55  Aligned_cols=69  Identities=23%  Similarity=0.379  Sum_probs=42.6

Q ss_pred             hccCCcCCCHHHHHHHHHHHHHHhhhccCccccccCcccccccchhHHhHHHHHHHhhccccchhc------cCCcchhH
Q psy7170          42 LVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRI------NAEPGFFT  115 (137)
Q Consensus        42 ~v~~~~v~se~ELqa~vLTCLYLsYSYMGNEISYPLKPFLve~~ke~FW~rcl~Ii~~~S~kMLri------Nadp~fFT  115 (137)
                      +|++..|.|.++++..+-..|           ++|  .+ ...|-|+||| |+.=...+.-.+.-.      +.+|..|.
T Consensus         4 vidg~~i~~~~~~~~~~~~~l-----------~~p--~~-~G~N~DAl~D-~ltd~~~~P~~i~~~~~~~~~~~~~~~~~   68 (89)
T d1ay7b_           4 VINGEQIRSISDLHQTLKKEL-----------ALP--EY-YGENLDALWD-CLTGWVEYPLVLEWRQFEQSKQLTENGAE   68 (89)
T ss_dssp             EEEGGGCCSHHHHHHHHHHHT-----------TCC--TT-CCSSHHHHHH-HHHHTSCSSEEEEEETHHHHHHHTTTHHH
T ss_pred             EEECccCCCHHHHHHHHHHHc-----------CCC--cc-cCCCHHHHHH-HHcCCCCCCeEEEEeccHHHhhhCHHHHH
Confidence            467788999999998766554           444  22 2568999999 885333332222222      24555665


Q ss_pred             ---HHHHHHHhcC
Q psy7170         116 ---EIFTELKACG  125 (137)
Q Consensus       116 ---evF~eLK~~~  125 (137)
                         ++|+|...+.
T Consensus        69 ~li~il~da~ee~   81 (89)
T d1ay7b_          69 SVLQVFREAKAEG   81 (89)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhC
Confidence               6777776654