Psyllid ID: psy7178

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150----
Protein Sequence
MGIENTWSQDECFSTASAASSFPIPLPPPTSSDVCEGPENFTGELSSLFEISEDNDVSDNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHcccccHHHHcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHcccHHHHHcccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccHccccccc
Coil and Loop (DISEMBL)
mgientwsqdecfstasaassfpiplppptssdvcegpenftgELSSLFEisedndvsdncaqrgvcglrnlgntcfmSAGIQSLVAASALVEYFTnkseedslksssaCSSLVDEFALLVRKMWSgqysivhpsdfkqilgvhypqfkdyrqv
Flexible Loop (DISEMBL)
mgientwsqdECFSTASAASSFPIPLPPPTSSDVCEGPENFTGELSSLFEISEDNDVSDNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKseedslksssacSSLVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPqfkdyrqv
Low Complexity Region (SEG)
MGIENTWSQDECFSTASAASSFPIPLPPPTSSDVCEGPENFTGELSSLFEISEDNDVSDNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNkseedslksssacsslVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQV
Disordered region (IsUnstruct)
********************************************************VSDNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFT*************CSSLVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFK*****
Disordered Region (DISOPRED)
****NTW***********************************************************CGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYR**
Disordered Region (DISEMBL)
**********ECFSTASAASSFPIPLPPPTSSDVCEGPENFTGELSSLFEISEDNDVSDNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFT**************SSLVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQV
Disordered Region (DISPRO)
****************************************************************GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKD****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGIENTWSQDECFSTASAASSFPIPLPPPTSSDVCEGPENFTGELSSLFEISEDNDVSDNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	154	2.2.26 [Sep-21-2011]
F6Z5C0	982	Ubiquitin carboxyl-termin	yes	N/A	0.590	0.092	0.436	5e-16
Q9Y4E8	981	Ubiquitin carboxyl-termin	yes	N/A	0.610	0.095	0.412	4e-15
Q9R085	952	Ubiquitin carboxyl-termin	yes	N/A	0.610	0.098	0.412	4e-15
Q8R5H1	981	Ubiquitin carboxyl-termin	yes	N/A	0.610	0.095	0.412	4e-15
Q2HJE4	952	Ubiquitin carboxyl-termin	yes	N/A	0.610	0.098	0.412	5e-15
Q4R6D3	373	Putative ubiquitin carbox	N/A	N/A	0.636	0.262	0.425	4e-13
P35123	962	Ubiquitin carboxyl-termin	no	N/A	0.590	0.094	0.382	1e-12
B2GUZ1	961	Ubiquitin carboxyl-termin	no	N/A	0.590	0.094	0.382	1e-12
A6QR55	963	Ubiquitin carboxyl-termin	no	N/A	0.597	0.095	0.368	3e-12
Q13107	963	Ubiquitin carboxyl-termin	no	N/A	0.590	0.094	0.372	3e-12

>sp|F6Z5C0|UBP15_XENTR Ubiquitin carboxyl-terminal hydrolase 15 OS=Xenopus tropicalis GN=usp15 PE=2 SV=2

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 54/94 (57%), Gaps = 3/94 (3%)

Query: 63  QRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSAC---SSLVDEFAL 119
           Q G+CGL NLGNTCFM++ IQ L     L EYF N   +D L   +       +   +A 
Sbjct: 284 QPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQDELNMDNPLGMRGEIAKSYAE 343

Query: 120 LVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
           L+++MWSG+YS V P  FK  +G   PQF  Y+Q
Sbjct: 344 LIKQMWSGKYSYVTPRAFKTQVGRFAPQFSGYQQ 377

Hydrolase that removes conjugated ubiquitin from target proteins and regulates various pathways such as the TGF-beta receptor signaling and NF-kappa-B pathways. Acts as a key regulator of TGF-beta receptor signaling pathway, but the precise mechanism is still unclear: according to a report, acts by promoting deubiquitination of monoubiquitinated R-SMADs, thereby alleviating inhibition of R-SMADs and promoting activation of TGF-beta target genes. According to another reports, regulates the TGF-beta receptor signaling pathway by mediating deubiquitination and stabilization of tgfbr1, leading to an enhanced TGF-beta signal.
Xenopus tropicalis (taxid: 8364)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q9Y4E8|UBP15_HUMAN Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo sapiens GN=USP15 PE=1 SV=3

 Score = 80.5 bits (197), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 55/97 (56%), Gaps = 3/97 (3%)

Query: 60  NCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSAC---SSLVDE 116
           N  Q G+CGL NLGNTCFM++ IQ L     L EYF N   ++ L   +       +   
Sbjct: 282 NNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKS 341

Query: 117 FALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
           +A L+++MWSG++S V P  FK  +G   PQF  Y+Q
Sbjct: 342 YAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQ 378

Protease that degrades 'Lys-48'-linked polyubiquitin chains. Protects target proteins against proteasomal degradation. Protects APC and human papillomavirus type 16 protein E6 against degradation via the ubiquitin proteasome pathway.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9R085|UBP15_RAT Ubiquitin carboxyl-terminal hydrolase 15 OS=Rattus norvegicus GN=Usp15 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 55/97 (56%), Gaps = 3/97 (3%)

Query: 60  NCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSAC---SSLVDE 116
           N  Q G+CGL NLGNTCFM++ IQ L     L EYF N   ++ L   +       +   
Sbjct: 253 NNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKS 312

Query: 117 FALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
           +A L+++MWSG++S V P  FK  +G   PQF  Y+Q
Sbjct: 313 YAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQ 349

Hydrolase that removes conjugated ubiquitin from target proteins and regulates various pathways such as the TGF-beta receptor signaling and NF-kappa-B pathways. Acts as a key regulator of TGF-beta receptor signaling pathway, but the precise mechanism is still unclear: according to a report, acts by promoting deubiquitination of monoubiquitinated R-SMADs (SMAD1, SMAD2 and/or SMAD3), thereby alleviating inhibition of R-SMADs and promoting activation of TGF-beta target genes. According to another reports, regulates the TGF-beta receptor signaling pathway by mediating deubiquitination and stabilization of TGFBR1, leading to an enhanced TGF-beta signal. Able to mediate deubiquitination of monoubiquitinated substrates as well as 'Lys-48'-linked polyubiquitin chains, protecting them against proteasomal degradation. Acts as an associated component of COP9 signalosome complex (CSN) and regulates different pathways via this association: regulates NF-kappa-B by mediating deubiquitination of NFKBIA and deubiquitinates substrates bound to VCP.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q8R5H1|UBP15_MOUSE Ubiquitin carboxyl-terminal hydrolase 15 OS=Mus musculus GN=Usp15 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 55/97 (56%), Gaps = 3/97 (3%)

Query: 60  NCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSAC---SSLVDE 116
           N  Q G+CGL NLGNTCFM++ IQ L     L EYF N   ++ L   +       +   
Sbjct: 282 NNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKS 341

Query: 117 FALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
           +A L+++MWSG++S V P  FK  +G   PQF  Y+Q
Sbjct: 342 YAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQ 378

Protease that degrades 'Lys-48'-linked polyubiquitin chains. Protects target proteins against proteasomal degradation.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q2HJE4|UBP15_BOVIN Ubiquitin carboxyl-terminal hydrolase 15 OS=Bos taurus GN=USP15 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 54/97 (55%), Gaps = 3/97 (3%)

Query: 60  NCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSAC---SSLVDE 116
           N  Q G+CGL NLGNTCFM++  Q L     L EYF N   ++ L   +       +   
Sbjct: 253 NNEQPGLCGLSNLGNTCFMNSAFQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKS 312

Query: 117 FALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
           +A L+++MWSG+YS V P  FK  +G   PQF  Y+Q
Sbjct: 313 YAELIKQMWSGKYSYVTPRAFKTQVGRFAPQFSGYQQ 349

Hydrolase that removes conjugated ubiquitin from target proteins and regulates various pathways such as the TGF-beta receptor signaling and NF-kappa-B pathways. Acts as a key regulator of TGF-beta receptor signaling pathway, but the precise mechanism is still unclear: according to a report, acts by promoting deubiquitination of monoubiquitinated R-SMADs (SMAD1, SMAD2 and/or SMAD3), thereby alleviating inhibition of R-SMADs and promoting activation of TGF-beta target genes. According to another reports, regulates the TGF-beta receptor signaling pathway by mediating deubiquitination and stabilization of TGFBR1, leading to an enhanced TGF-beta signal. Able to mediate deubiquitination of monoubiquitinated substrates as well as 'Lys-48'-linked polyubiquitin chains, protecting them against proteasomal degradation. Acts as an associated component of COP9 signalosome complex (CSN) and regulates different pathways via this association: regulates NF-kappa-B by mediating deubiquitination of NFKBIA and deubiquitinates substrates bound to VCP.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q4R6D3|UBP50_MACFA Putative ubiquitin carboxyl-terminal hydrolase 50 OS=Macaca fascicularis GN=USP50 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 57/101 (56%), Gaps = 3/101 (2%)

Query: 53  EDNDVSDNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSS 112
           ++ D S  C+Q GV GLRNLGNTC+M+A +Q L + S LVEYF +     +L++   CS 
Sbjct: 31  KEADGSQPCSQ-GVTGLRNLGNTCYMNAILQCLCSISPLVEYFLSGKYITALQND--CSE 87

Query: 113 LVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
           +   FA L+  MW G    V P  F+  LG  YP F    Q
Sbjct: 88  VATAFAYLMTDMWLGDSDCVSPEIFRSALGNLYPAFTKKTQ 128

May recognize and hydrolyze the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Macaca fascicularis (taxid: 9541)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4 PE=1 SV=3

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 63  QRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSAC---SSLVDEFAL 119
           Q G+CGL NLGNTCFM++ +Q L   + L EYF     E  +   +       + + +A 
Sbjct: 298 QPGLCGLGNLGNTCFMNSALQCLSNTAPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAE 357

Query: 120 LVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
           L+++MWSG+ + V P  FK  +G   PQF  Y+Q
Sbjct: 358 LIKQMWSGRDTHVAPRMFKTQVGRFAPQFSGYQQ 391

Hydrolase that deubiquitinates target proteins such as the receptor ADORA2A and TRIM21. Deubiquitination of ADORA2A increases the amount of functional receptor at the cell surface. Plays a role in the regulation of quality control in the ER.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus GN=Usp4 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 3/94 (3%)

Query: 63  QRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSAC---SSLVDEFAL 119
           Q G+CGL NLGNTCFM++ +Q L     L EYF     E  +   +       + + +A 
Sbjct: 298 QPGLCGLGNLGNTCFMNSALQCLSNTGPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAE 357

Query: 120 LVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
           L+++MWSG+ + V P  FK  +G   PQF  Y+Q
Sbjct: 358 LIKQMWSGRDTHVAPRMFKTQVGRFAPQFSGYQQ 391

Hydrolase that deubiquitinates target proteins such as the receptor ADORA2A and TRIM21. Deubiquitination of ADORA2A increases the amount of functional receptor at the cell surface. Plays a role in the regulation of quality control in the ER.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 3/95 (3%)

Query: 62  AQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSAC---SSLVDEFA 118
            Q G+CGL NLGNTCFM++ +Q L   + L +YF     E  +   +       + + +A
Sbjct: 297 VQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYA 356

Query: 119 LLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
            L+++MWSG+ + V P  FK  +G   PQF  Y+Q
Sbjct: 357 ELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQ 391

Hydrolase that deubiquitinates target proteins such as the receptor ADORA2A and TRIM21. Deubiquitination of ADORA2A increases the amount of functional receptor at the cell surface. Plays a role in the regulation of quality control in the ER.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4 PE=1 SV=3

 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 63  QRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSAC---SSLVDEFAL 119
           Q G+CGL NLGNTCFM++ +Q L   + L +YF     E  +   +       + + +A 
Sbjct: 298 QPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAE 357

Query: 120 LVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
           L+++MWSG+ + V P  FK  +G   PQF  Y+Q
Sbjct: 358 LIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQ 391

Hydrolase that deubiquitinates target proteins such as the receptor ADORA2A and TRIM21. Deubiquitination of ADORA2A increases the amount of functional receptor at the cell surface. Plays a role in the regulation of quality control in the ER.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
328715747	898	PREDICTED: ubiquitin carboxyl-terminal h	0.948	0.162	0.427	2e-26
380029481	1025	PREDICTED: uncharacterized protein LOC10	0.948	0.142	0.394	5e-25
345487479	1022	PREDICTED: LOW QUALITY PROTEIN: ubiquiti	0.948	0.142	0.402	5e-25
326508908	762	predicted protein [Hordeum vulgare subsp	0.935	0.188	0.428	6e-25
383858846	1050	PREDICTED: uncharacterized protein LOC10	0.948	0.139	0.382	8e-25
307183092	1048	Ubiquitin carboxyl-terminal hydrolase 32	0.935	0.137	0.397	1e-23
307213501	1054	Ubiquitin carboxyl-terminal hydrolase 32	0.935	0.136	0.378	2e-23
350396230	1052	PREDICTED: ubiquitin carboxyl-terminal h	0.948	0.138	0.377	3e-23
332024377	1053	Ubiquitin carboxyl-terminal hydrolase 32	0.935	0.136	0.372	5e-23
321475567	1180	hypothetical protein DAPPUDRAFT_307840 [	0.922	0.120	0.390	1e-22

>gi|328715747|ref|XP_001949023.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like [Acyrthosiphon pisum]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/159 (42%), Positives = 97/159 (61%), Gaps = 13/159 (8%)

Query: 1   MGIENTWSQDE--CFSTASAASSFPIPLPPPTSSD----VCEGPENFTGELSSLFEISED 54
           M I+++W++D   CF T S  SSFPIPLP P+  D    +   P   T  L      + D
Sbjct: 70  MTIDSSWNEDSTSCFPT-STNSSFPIPLPGPSDFDEFNSIQTVPRAETPGLGLSTIFAAD 128

Query: 55  NDVSDNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLV 114
            D+SD  A+ GVCGLRNLGNTCFMSAG+Q+L++  +LV YF       S     +  +L+
Sbjct: 129 GDLSDPTAEIGVCGLRNLGNTCFMSAGLQALLSTESLVSYFL------SFDDDGSEDTLI 182

Query: 115 DEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
            +F+ L +++W+GQYS+++P  FK +LG  Y QF+D  Q
Sbjct: 183 GQFSDLAKRVWNGQYSVINPHQFKYVLGKRYAQFRDCSQ 221

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029481|ref|XP_003698399.1| PREDICTED: uncharacterized protein LOC100865520 [Apis florea]

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 101/175 (57%), Gaps = 29/175 (16%)

Query: 1   MGIENTWSQDECFSTASAASSFPIPLPPPTS----SDVCEGP--ENFTG----------- 43
           MGIE+TW++       S+ S + IPLPPP      +DV   P  +N TG           
Sbjct: 64  MGIEDTWTE-----ANSSTSDYAIPLPPPPGLNDFTDVGADPIGDNGTGIEYGPFLPPDT 118

Query: 44  -ELSSLF----EISEDNDVSDNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNK 98
             L++LF    +  +D+ + D   + GVCGLRNLGNTCFM+AG+Q L A   ++ +F + 
Sbjct: 119 PALNNLFSEGGDSQDDSQMEDVVLRAGVCGLRNLGNTCFMAAGLQCLTATPPVLRHFLDL 178

Query: 99  SEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
            +    +      SL+  F+ L+ KMWSG+YS++ P++FKQ LG ++ QFKDYRQ
Sbjct: 179 QQRG--EKLPPPGSLMAHFSALLGKMWSGKYSVLRPTEFKQTLGAYHSQFKDYRQ 231

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487479|ref|XP_001600155.2| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 43-like [Nasonia vitripennis]

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 98/169 (57%), Gaps = 23/169 (13%)

Query: 1   MGIENTWSQDECFSTASAASSFPIPLPPPTS---SDVCEGPEN----------FTGELSS 47
           MGIENTW++       ++AS + IPL PP S   +D    P N             EL++
Sbjct: 59  MGIENTWTE-----ANTSASDYAIPLQPPFSDLVTDPLHDPRNGIEHGPFLPASATELNN 113

Query: 48  LFEIS---EDNDVSDNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSL 104
           LF  +    D+ + +  A  GVCGLRNLGNTCFM+AG+Q L A   ++ +F    +    
Sbjct: 114 LFSDTGDTPDDSIIEVTAPAGVCGLRNLGNTCFMAAGLQCLTATPPVLRHFLELQQRG-- 171

Query: 105 KSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
           +      SL+  F+ L+ KMWSG+Y+++ P++FKQ LGV++ QFKDYRQ
Sbjct: 172 EKLPPPGSLMANFSTLLSKMWSGKYNVLQPTEFKQTLGVYHSQFKDYRQ 220

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326508908|dbj|BAJ86847.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 96/161 (59%), Gaps = 17/161 (10%)

Query: 1   MGIENTWSQDE--CFSTASAASSFPIPLPPPT------SSDVCEGPENFTGELSSLFEIS 52
           M I+++WS+D   CF T S  SSFPI LP P+      S       E     LS++F  +
Sbjct: 70  MTIDSSWSEDSTSCFPT-STNSSFPIALPGPSDFEEFNSIQTVPRAETPGLGLSTIF--A 126

Query: 53  EDNDVSDNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSS 112
            D D+SD  A+ GVCGLRNLGNTCFMSAG+Q+L++   LV YF       S  +  +  +
Sbjct: 127 SDADLSDPTAEIGVCGLRNLGNTCFMSAGLQALLSTENLVSYFL------SFDNDGSEET 180

Query: 113 LVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
           L+ +F+ L ++ W GQYS+++P  FK +LG  Y QF+D  Q
Sbjct: 181 LIGQFSDLAKRFWHGQYSVINPHQFKYVLGKRYAQFRDCSQ 221

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383858846|ref|XP_003704910.1| PREDICTED: uncharacterized protein LOC100877443 [Megachile rotundata]

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 102/175 (58%), Gaps = 29/175 (16%)

Query: 1   MGIENTWSQDECFSTASAASSFPIPLPPPTS----SDVCEGPENFTGE------------ 44
           MGIE+TW++       S+ S + IPLPPP      +DV   P + +G             
Sbjct: 64  MGIEDTWTE-----ANSSTSDYAIPLPPPPGLNDFTDVGADPISDSGTGIEHGPFLPPGT 118

Query: 45  --LSSLF----EISEDNDVSDNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNK 98
             L++LF    +  +D+ + D   + GVCGLRNLGNTCFM+AG+Q L A   ++ +F + 
Sbjct: 119 PALNNLFSEGGDSQDDSPMEDVVLRAGVCGLRNLGNTCFMAAGLQCLTATPPVLRHFLDL 178

Query: 99  SEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
            ++   +      SL+  F++L+ KMWSG+YS++ P++FKQ LG ++ QFKDYRQ
Sbjct: 179 QQKG--EKLPPPGSLMAHFSVLLGKMWSGRYSVLRPTEFKQTLGAYHSQFKDYRQ 231

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183092|gb|EFN70009.1| Ubiquitin carboxyl-terminal hydrolase 32 [Camponotus floridanus]

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 100/176 (56%), Gaps = 32/176 (18%)

Query: 1   MGIENTWSQDECFSTASAASSFPIPLPPPTS----SDVCEGP-ENFTG------------ 43
           MGIE+TW++       S+ S + IPLPPP      SDV   P ++ TG            
Sbjct: 64  MGIEDTWTE-----ANSSTSDYAIPLPPPPGLNDFSDVGADPIDSGTGIEHGPFLPPGTP 118

Query: 44  ELSSLFEISEDNDVSDNCAQR------GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTN 97
            L++LF  +E  D  D+          GVCGLRNLGNTCFM+AG+Q L A   ++ +F +
Sbjct: 119 ALNNLF--AEAGDSHDDSPMEVVVLPAGVCGLRNLGNTCFMAAGLQCLTATPPVLRHFLD 176

Query: 98  KSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
             +    +      SL+  F++L+ KMWSG+YS++ P++FKQ LG ++ QFKDYRQ
Sbjct: 177 LQQRG--EKLPPPGSLMAHFSVLLGKMWSGRYSVLRPTEFKQTLGAYHSQFKDYRQ 230

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213501|gb|EFN88910.1| Ubiquitin carboxyl-terminal hydrolase 32 [Harpegnathos saltator]

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/177 (37%), Positives = 98/177 (55%), Gaps = 33/177 (18%)

Query: 1   MGIENTWSQDECFSTASAASSFPIPLPPP----------------TSSDVCEGP--ENFT 42
           MGIE+TW++       S+ S + IPLPPP                + + +  GP     T
Sbjct: 65  MGIEDTWTE-----ANSSTSDYAIPLPPPPGLNDFSDVGADSIGDSGTGIEHGPFLPPGT 119

Query: 43  GELSSLFEISEDNDVSDNCAQR------GVCGLRNLGNTCFMSAGIQSLVAASALVEYFT 96
             L++LF  +E  D  D+          GVCGLRNLGNTCFM+AG+Q L A   ++++F 
Sbjct: 120 PALNNLF--AETGDSHDDSPMEVVVLPAGVCGLRNLGNTCFMAAGLQCLTATPPVLQHFL 177

Query: 97  NKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
           +       +      SL+  F++L+ KMWSG+YS++ P++FKQ LG ++ QFKDYRQ
Sbjct: 178 DLQHRG--EKLPPPGSLMAHFSVLLGKMWSGRYSVLRPTEFKQTLGAYHSQFKDYRQ 232

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350396230|ref|XP_003484486.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 43-like [Bombus impatiens]

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/175 (37%), Positives = 99/175 (56%), Gaps = 29/175 (16%)

Query: 1   MGIENTWSQDECFSTASAASSFPIPLPPPTS----SDVCEGPENFTGE------------ 44
           MGIE+TW++       S+ S + IPLPPP      +DV   P   +G             
Sbjct: 64  MGIEDTWTE-----ANSSTSDYAIPLPPPPGLNDFTDVGADPIGDSGTGIEYGPFLPPGT 118

Query: 45  --LSSLF----EISEDNDVSDNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNK 98
             L++LF    +  +D+ + D   + GVCGLRNLGNTCFM+AG+Q L A   ++ +F + 
Sbjct: 119 PALNNLFSEGGDSQDDSPMEDVVLRAGVCGLRNLGNTCFMAAGLQCLTATPPVLRHFLDI 178

Query: 99  SEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
            +    +      SL+  F++L+ KMWSG+YS++ P++FKQ LG ++ QFKD RQ
Sbjct: 179 QQ--GGEKLPPPGSLMAHFSVLLGKMWSGKYSVLRPTEFKQTLGAYHSQFKDNRQ 231

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024377|gb|EGI64575.1| Ubiquitin carboxyl-terminal hydrolase 32 [Acromyrmex echinatior]

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/177 (37%), Positives = 98/177 (55%), Gaps = 33/177 (18%)

Query: 1   MGIENTWSQDECFSTASAASSFPIPLPPP----------------TSSDVCEGP--ENFT 42
           MGIE+TW++       S+ S + IPLPPP                + + +  GP     T
Sbjct: 64  MGIEDTWTE-----ANSSTSDYAIPLPPPPGLNDFTDMGADPIGDSGTGIEHGPFLPPGT 118

Query: 43  GELSSLFEISEDNDVSDNCAQR------GVCGLRNLGNTCFMSAGIQSLVAASALVEYFT 96
             L+++F  +E  D  D+          GVCGLRNLGNTCFM+AG+Q L A   ++ +F 
Sbjct: 119 PTLNNIF--AEAGDSHDDSPMEVVVLPAGVCGLRNLGNTCFMAAGLQCLTATPPVLRHFL 176

Query: 97  NKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
           +  +    +      SL+  F++L+ KMWSG+YS++ P++FKQ LG ++ QFKDYRQ
Sbjct: 177 DLQQRG--EKLPPPGSLMAHFSVLLGKMWSGRYSVLRPTEFKQTLGAYHSQFKDYRQ 231

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321475567|gb|EFX86529.1| hypothetical protein DAPPUDRAFT_307840 [Daphnia pulex]

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 93/174 (53%), Gaps = 32/174 (18%)

Query: 1   MGIENTWSQDE----------------CFSTASAASSFPIPLPPP---TSSDVCEGPENF 41
           MGI N+W+ D+                C S    ASS P   P P   T+ D+ E     
Sbjct: 93  MGIANSWNDDDAFCNESAIPARGVELSCMSLGQTASSGPWTSPTPLFPTTLDLFEDDRES 152

Query: 42  TGELSSLFEISEDNDVSDNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEE 101
             EL          DV+D+ +  GVCGLRNLGNTCFM+AG+Q L+    L+ YF + S +
Sbjct: 153 VCELLG--------DVADSNSIPGVCGLRNLGNTCFMNAGLQCLINTPPLLNYFHSNSID 204

Query: 102 DSLKSSSACSS--LVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
           D       C+S  L  +FA  + KMWSG++S + P++FK  L +++PQFKDYRQ
Sbjct: 205 DQYI---GCNSVHLTAQFAAFLLKMWSGRFSTLRPAEFKHTLSLYHPQFKDYRQ 255

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
UNIPROTKB|I3LRX7	489	I3LRX7 "Uncharacterized protei	0.974	0.306	0.320	1.2e-12
UNIPROTKB|E1C718	981	USP15 "Ubiquitin carboxyl-term	0.974	0.152	0.316	1.4e-12
ZFIN|ZDB-GENE-041008-187	1009	usp4 "ubiquitin specific prote	0.707	0.108	0.348	1.7e-12
UNIPROTKB|Q9Y4E8	981	USP15 "Ubiquitin carboxyl-term	0.974	0.152	0.320	2.9e-12
MGI|MGI:101857	981	Usp15 "ubiquitin specific pept	0.974	0.152	0.320	3.7e-12
UNIPROTKB|E2R988	982	USP15 "Ubiquitin carboxyl-term	0.974	0.152	0.320	3.7e-12
UNIPROTKB|F1SKD5	982	LOC100737425 "Ubiquitin carbox	0.974	0.152	0.320	3.7e-12
UNIPROTKB|E1C719	953	USP15 "Ubiquitin carboxyl-term	0.590	0.095	0.414	4.5e-12
UNIPROTKB|F1NFR2	955	USP15 "Ubiquitin carboxyl-term	0.590	0.095	0.414	4.5e-12
UNIPROTKB|F6Z5C0	982	usp15 "Ubiquitin carboxyl-term	0.590	0.092	0.414	4.7e-12

UNIPROTKB|I3LRX7 I3LRX7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 176 (67.0 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 52/162 (32%), Positives = 76/162 (46%)

Query:     4 ENTWSQDECFSTASAASSFP-IPLPPPTS-SDVCEGPENFTGELSSL----FEISEDNDV 57
             + TW +      +  AS+F  +P   P+S S+      N   + S+     +   ++ D 
Sbjct:    34 DGTWPRGPSTPKSPGASNFSTLPKISPSSLSNNYNNINNRNVKNSNYCLPSYTAYKNYDY 93

Query:    58 SD---NCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNXXXXXXXXXXX---XXX 111
             S+   N  Q G+CGL NLGNTCFM++ IQ L     L EYF N                 
Sbjct:    94 SEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRG 153

Query:   112 XXVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
                  +A L+++MWSG++S V P  FK  +G   PQF  Y+Q
Sbjct:   154 EIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQ 195

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|E1C718 USP15 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)]

 Score = 180 (68.4 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 51/161 (31%), Positives = 75/161 (46%)

Query:     4 ENTWSQDECFSTASAASSFP-IPLPPPTSSDVCEGPENFTGELSSL----FEISEDNDVS 58
             + TW +      +  AS+F  +P   P+ S+      N   + S+     +   ++ D S
Sbjct:   217 DGTWPRGSSTPKSPGASNFSTLPKISPSLSNNYNNMNNRNVKNSNYCLPSYTAYKNYDYS 276

Query:    59 D---NCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNXXXXXXXXXXX---XXXX 112
             +   +  Q G+CGL NLGNTCFM++ IQ L     L EYF N                  
Sbjct:   277 EPGRHNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGE 336

Query:   113 XVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
                 +A L+++MWSG+YS V P  FK  +G   PQF  Y+Q
Sbjct:   337 IAKSYAELIKQMWSGKYSYVTPRAFKTQVGRFAPQFSGYQQ 377

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0005160 "transforming growth factor beta receptor binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0030509 "BMP signaling pathway" evidence=IEA

GO:0035520 "monoubiquitinated protein deubiquitination" evidence=IEA

GO:0046332 "SMAD binding" evidence=IEA

GO:0060389 "pathway-restricted SMAD protein phosphorylation" evidence=IEA

ZFIN|ZDB-GENE-041008-187 usp4 "ubiquitin specific protease 4 (proto-oncogene)" [Danio rerio (taxid:7955)]

 Score = 160 (61.4 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
 Identities = 39/112 (34%), Positives = 52/112 (46%)

Query:    45 LSSLFEISEDNDVSDNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNXXXXXXX 104
             L S    S      ++ AQ G+CGL NLGNTCFM++ +Q L     L EYF         
Sbjct:   297 LGSYNSYSSSYSYRESAAQPGLCGLSNLGNTCFMNSALQCLSNTPPLTEYFLEDRYEAEI 356

Query:   105 XXXX---XXXXXVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
                          + +A LV++MW  + S V P  FK  +G   PQF  Y+Q
Sbjct:   357 NRENPLGMRGEIAEAYADLVKQMWLSRSSYVAPRTFKTQVGRFAPQFSGYQQ 408

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|Q9Y4E8 USP15 "Ubiquitin carboxyl-terminal hydrolase 15" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 2.9e-12, P = 2.9e-12
 Identities = 52/162 (32%), Positives = 76/162 (46%)

Query:     4 ENTWSQDECFSTASAASSFP-IPLPPPTS-SDVCEGPENFTGELSSL----FEISEDNDV 57
             + TW +      +  AS+F  +P   P+S S+      N   + S+     +   ++ D 
Sbjct:   217 DGTWPRGPSTPKSPGASNFSTLPKISPSSLSNNYNNMNNRNVKNSNYCLPSYTAYKNYDY 276

Query:    58 SD---NCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNXXXXXXXXXXX---XXX 111
             S+   N  Q G+CGL NLGNTCFM++ IQ L     L EYF N                 
Sbjct:   277 SEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRG 336

Query:   112 XXVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
                  +A L+++MWSG++S V P  FK  +G   PQF  Y+Q
Sbjct:   337 EIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQ 378

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IDA

GO:0016579 "protein deubiquitination" evidence=IDA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0035520 "monoubiquitinated protein deubiquitination" evidence=IDA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IMP

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=IMP;IDA;TAS

GO:0030509 "BMP signaling pathway" evidence=IDA

GO:0046332 "SMAD binding" evidence=IPI

GO:0060389 "pathway-restricted SMAD protein phosphorylation" evidence=IMP

GO:0005160 "transforming growth factor beta receptor binding" evidence=IPI

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=TAS

MGI|MGI:101857 Usp15 "ubiquitin specific peptidase 15" [Mus musculus (taxid:10090)]

 Score = 176 (67.0 bits), Expect = 3.7e-12, P = 3.7e-12
 Identities = 52/162 (32%), Positives = 76/162 (46%)

Query:     4 ENTWSQDECFSTASAASSFP-IPLPPPTS-SDVCEGPENFTGELSSL----FEISEDNDV 57
             + TW +      +  AS+F  +P   P+S S+      N   + S+     +   ++ D 
Sbjct:   217 DGTWPRGPSTPKSPGASNFSTLPKISPSSLSNNYNNINNRNVKNSNYCLPSYTAYKNYDY 276

Query:    58 SD---NCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNXXXXXXXXXXX---XXX 111
             S+   N  Q G+CGL NLGNTCFM++ IQ L     L EYF N                 
Sbjct:   277 SEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRG 336

Query:   112 XXVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
                  +A L+++MWSG++S V P  FK  +G   PQF  Y+Q
Sbjct:   337 EIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQ 378

GO:0003824 "catalytic activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISO

GO:0004221 "ubiquitin thiolesterase activity" evidence=ISO

GO:0004843 "ubiquitin-specific protease activity" evidence=ISO;IDA

GO:0005160 "transforming growth factor beta receptor binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=ISO

GO:0008152 "metabolic process" evidence=IDA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030509 "BMP signaling pathway" evidence=ISO

GO:0035520 "monoubiquitinated protein deubiquitination" evidence=ISO

GO:0046332 "SMAD binding" evidence=ISO

GO:0060389 "pathway-restricted SMAD protein phosphorylation" evidence=ISO

UNIPROTKB|E2R988 USP15 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)]

 Score = 176 (67.0 bits), Expect = 3.7e-12, P = 3.7e-12
 Identities = 52/162 (32%), Positives = 76/162 (46%)

Query:     4 ENTWSQDECFSTASAASSFP-IPLPPPTS-SDVCEGPENFTGELSSL----FEISEDNDV 57
             + TW +      +  AS+F  +P   P+S S+      N   + S+     +   ++ D 
Sbjct:   218 DGTWPRGPSAPKSPGASNFSALPKISPSSLSNNYNNINNRNVKNSNYCLPSYTAYKNYDY 277

Query:    58 SD---NCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNXXXXXXXXXXX---XXX 111
             S+   N  Q G+CGL NLGNTCFM++ IQ L     L EYF N                 
Sbjct:   278 SEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRG 337

Query:   112 XXVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
                  +A L+++MWSG++S V P  FK  +G   PQF  Y+Q
Sbjct:   338 EIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQ 379

GO:0060389 "pathway-restricted SMAD protein phosphorylation" evidence=IEA

GO:0046332 "SMAD binding" evidence=IEA

GO:0035520 "monoubiquitinated protein deubiquitination" evidence=IEA

GO:0030509 "BMP signaling pathway" evidence=IEA

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005160 "transforming growth factor beta receptor binding" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|F1SKD5 LOC100737425 "Ubiquitin carboxyl-terminal hydrolase" [Sus scrofa (taxid:9823)]

 Score = 176 (67.0 bits), Expect = 3.7e-12, P = 3.7e-12
 Identities = 52/162 (32%), Positives = 76/162 (46%)

Query:     4 ENTWSQDECFSTASAASSFP-IPLPPPTS-SDVCEGPENFTGELSSL----FEISEDNDV 57
             + TW +      +  AS+F  +P   P+S S+      N   + S+     +   ++ D 
Sbjct:   218 DGTWPRGPSTPKSPGASNFSTLPKISPSSLSNNYNNINNRNVKNSNYCLPSYTAYKNYDY 277

Query:    58 SD---NCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNXXXXXXXXXXX---XXX 111
             S+   N  Q G+CGL NLGNTCFM++ IQ L     L EYF N                 
Sbjct:   278 SEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRG 337

Query:   112 XXVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
                  +A L+++MWSG++S V P  FK  +G   PQF  Y+Q
Sbjct:   338 EIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQ 379

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|E1C719 USP15 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)]

 Score = 175 (66.7 bits), Expect = 4.5e-12, P = 4.5e-12
 Identities = 39/94 (41%), Positives = 49/94 (52%)

Query:    63 QRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNXXXXXXXXXXX---XXXXXVDEFAL 119
             Q G+CGL NLGNTCFM++ IQ L     L EYF N                      +A 
Sbjct:   256 QPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAE 315

Query:   120 LVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
             L+++MWSG+YS V P  FK  +G   PQF  Y+Q
Sbjct:   316 LIKQMWSGKYSYVTPRAFKTQVGRFAPQFSGYQQ 349

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|F1NFR2 USP15 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)]

 Score = 175 (66.7 bits), Expect = 4.5e-12, P = 4.5e-12
 Identities = 39/94 (41%), Positives = 49/94 (52%)

Query:    63 QRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNXXXXXXXXXXX---XXXXXVDEFAL 119
             Q G+CGL NLGNTCFM++ IQ L     L EYF N                      +A 
Sbjct:   258 QPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAE 317

Query:   120 LVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
             L+++MWSG+YS V P  FK  +G   PQF  Y+Q
Sbjct:   318 LIKQMWSGKYSYVTPRAFKTQVGRFAPQFSGYQQ 351

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|F6Z5C0 usp15 "Ubiquitin carboxyl-terminal hydrolase 15" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 175 (66.7 bits), Expect = 4.7e-12, P = 4.7e-12
 Identities = 39/94 (41%), Positives = 49/94 (52%)

Query:    63 QRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNXXXXXXXXXXX---XXXXXVDEFAL 119
             Q G+CGL NLGNTCFM++ IQ L     L EYF N                      +A 
Sbjct:   284 QPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQDELNMDNPLGMRGEIAKSYAE 343

Query:   120 LVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
             L+++MWSG+YS V P  FK  +G   PQF  Y+Q
Sbjct:   344 LIKQMWSGKYSYVTPRAFKTQVGRFAPQFSGYQQ 377

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS

GO:0004221 "ubiquitin thiolesterase activity" evidence=ISS

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=ISS

GO:0016579 "protein deubiquitination" evidence=ISS

GO:0030509 "BMP signaling pathway" evidence=ISS

GO:0035520 "monoubiquitinated protein deubiquitination" evidence=ISS

GO:0060389 "pathway-restricted SMAD protein phosphorylation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19.12	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	154
COG5560	823	COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po	3e-16
pfam00443	313	pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol	9e-16
cd02658	311	cd02658, Peptidase_C19B, A subfamily of Peptidase	3e-10
cd02657	305	cd02657, Peptidase_C19A, A subfamily of Peptidase	2e-09
cd02674	230	cd02674, Peptidase_C19R, A subfamily of peptidase	4e-06
cd02669	440	cd02669, Peptidase_C19M, A subfamily of Peptidase	9e-06
COG5533	415	COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos	3e-05
cd02660	328	cd02660, Peptidase_C19D, A subfamily of Peptidase	5e-05
cd02257	255	cd02257, Peptidase_C19, Peptidase C19 contains ubi	9e-05
COG5207	749	COG5207, UBP14, Isopeptidase T [Posttranslational	1e-04
cd02661	304	cd02661, Peptidase_C19E, A subfamily of Peptidase	2e-04
cd02664	327	cd02664, Peptidase_C19H, A subfamily of Peptidase	5e-04
cd02662	240	cd02662, Peptidase_C19F, A subfamily of Peptidase	0.001
cd02668	324	cd02668, Peptidase_C19L, A subfamily of Peptidase	0.001

>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 74.1 bits (182), Expect = 3e-16
 Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 4/107 (3%)

Query: 50  EISEDNDVSDNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSA 109
            I +D++ S N  + G CGLRNLGNTC+M++ +Q L+    L +YF +   E+S+   + 
Sbjct: 250 SIVDDHNRSIN-KEAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENP 308

Query: 110 C---SSLVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
                S+   +A L+++++ G      PS FK+ +G    +F  Y Q
Sbjct: 309 LGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQ 355

Length = 823

>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase

 Score = 72.1 bits (177), Expect = 9e-16
 Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 65  GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKM 124
           G  GL NLGNTC+M++ +Q+L +   L +Y    S E      S    L    A L   +
Sbjct: 2   GPTGLANLGNTCYMNSVLQALFSIPPLRDYLLQNSSELINPLGSLN-QLPRALADLFHAL 60

Query: 125 WSGQ--YSIVHPSDFKQILGVHYPQFKDYRQ 153
            S     + V P +F Q LG   PQF  Y Q
Sbjct: 61  QSPNSKNASVSPKNFLQALGKISPQFSGYMQ 91

Length = 313

>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 26/106 (24%)

Query: 68  GLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACS------SLVDEFALLV 121
           GLRNLGN+C++++ +Q L +  +    +      D L++            L  +   L 
Sbjct: 1   GLRNLGNSCYLNSVLQVLFSIPSFQWRY------DDLENKFPSDVVDPANDLNCQLIKLA 54

Query: 122 RKMWSGQYSI--------------VHPSDFKQILGVHYPQFKDYRQ 153
             + SG+YS               + PS FK ++G  +P+F   RQ
Sbjct: 55  DGLLSGRYSKPASLKSENDPYQVGIKPSMFKALIGKGHPEFSTMRQ 100

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 311

>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 68  GLRNLGNTCFMSAGIQSLVAASALVE---YFTNKSEEDSLKSSSACSSLVDEFALLVRKM 124
           GL NLGNTC++++ +Q L +   L +    +          ++ +  +L +    L   M
Sbjct: 1   GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRG----ANQSSDNLTNALRDLFDTM 56

Query: 125 WSGQYSIVHPSDFKQILGVHYPQF 148
              Q  +  P +F Q+L + +PQF
Sbjct: 57  DKKQEPVP-PIEFLQLLRMAFPQF 79

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 305

>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 13/20 (65%), Positives = 17/20 (85%)

Query: 68 GLRNLGNTCFMSAGIQSLVA 87
          GLRNLGNTC+M++ +Q L A
Sbjct: 1  GLRNLGNTCYMNSILQCLSA 20

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 230

>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 65  GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKM 124
           G  GL N+ N  + +  IQ+L     +  +F     E+        S LV   + L+RK+
Sbjct: 118 GFVGLNNIKNNDYANVIIQALSHVKPIRNFFL--LYENYENIKDRKSELVKRLSELIRKI 175

Query: 125 WS-----GQYSIVHPSDFKQILGVH 144
           W+     G  S   P +  Q +   
Sbjct: 176 WNPRNFKGHVS---PHELLQAVSKV 197

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 440

>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 42.3 bits (99), Expect = 3e-05
 Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 68  GLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSS----LVDEFALLVRK 123
           GLRN GNTC+M+  +Q L++   L      +    ++ +             +F  L   
Sbjct: 73  GLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYET 132

Query: 124 MWS-GQYSIVHPSDFKQILGVHYPQFKDYRQ 153
               G  SI  P +F  IL      F    Q
Sbjct: 133 PGCHGPKSI-SPRNFIDILSGRNKLFSGDMQ 162

Length = 415

>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 68  GLRNLGNTCFMSAGIQSLVAASALVEYF-----TNKSEEDSLKSSSACS 111
           GL NLG TCFM+  +Q+L+    L  YF     +      S  S  +C+
Sbjct: 2   GLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCA 50

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 328

>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases

 Score = 40.5 bits (95), Expect = 9e-05
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 68  GLRNLGNTCFMSAGIQSLVA----ASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRK 123
           GL NLGNTC++++ +Q+L +    A   + +  +K  E+  KSS   S        L+  
Sbjct: 1   GLNNLGNTCYLNSVLQALFSEQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLK-SLIHD 59

Query: 124 MWSGQYSI 131
           ++ G+   
Sbjct: 60  LFGGKLES 67

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 255

>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 67  CGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWS 126
            GL NLGN+C++S+ IQSLV  +   E F      +     +    L  +   L+ KM  
Sbjct: 304 VGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKE 363

Query: 127 GQYSI----VHPSDFKQILGVHYPQFKDYRQ 153
              +     + P DFK ++G  +P+F  + Q
Sbjct: 364 TPDNEYVNGISPLDFKMLIGQDHPEFGKFAQ 394

Length = 749

>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 67  CGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWS 126
            GL+NLGNTCF+++ +Q L     L  Y  ++       +   C  ++      V +  +
Sbjct: 2   AGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFC--MMCALEAHVERALA 59

Query: 127 GQYSIVHPSDFKQILGVHYPQFKDYRQ 153
                  P  F   L      F+  RQ
Sbjct: 60  SSGPGSAPRIFSSNLKQISKHFRIGRQ 86

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304

>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 12/22 (54%), Positives = 17/22 (77%)

Query: 68 GLRNLGNTCFMSAGIQSLVAAS 89
          GL NLGNTC+M++ +Q+L  A 
Sbjct: 1  GLINLGNTCYMNSVLQALFMAK 22

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 327

>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 15/27 (55%), Positives = 22/27 (81%)

Query: 68 GLRNLGNTCFMSAGIQSLVAASALVEY 94
          GL NLGNTCFM++ +Q+L +  +L+EY
Sbjct: 1  GLVNLGNTCFMNSVLQALASLPSLIEY 27

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 240

>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 7/82 (8%)

Query: 68  GLRNLGNTCFMSAGIQSLVAASALVE--YFTNKSEEDSLKSSSAC-----SSLVDEFALL 120
           GL+NLG TC++++ +Q         +  Y  N +E+  LK+          +++D+  L+
Sbjct: 1   GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLI 60

Query: 121 VRKMWSGQYSIVHPSDFKQILG 142
             ++  G  S+V PS F + LG
Sbjct: 61  FAQLQFGNRSVVDPSGFVKALG 82

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 324

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	154
COG5560	823	UBP12 Ubiquitin C-terminal hydrolase [Posttranslat	99.84
cd02658	311	Peptidase_C19B A subfamily of Peptidase C19. Pepti	99.82
cd02669	440	Peptidase_C19M A subfamily of Peptidase C19. Pepti	99.81
cd02660	328	Peptidase_C19D A subfamily of Peptidase C19. Pepti	99.79
cd02657	305	Peptidase_C19A A subfamily of Peptidase C19. Pepti	99.77
KOG0944|consensus	763		99.76
cd02666	343	Peptidase_C19J A subfamily of Peptidase C19. Pepti	99.74
cd02671	332	Peptidase_C19O A subfamily of Peptidase C19. Pepti	99.74
cd02661	304	Peptidase_C19E A subfamily of Peptidase C19. Pepti	99.74
PF00443	269	UCH: Ubiquitin carboxyl-terminal hydrolase; InterP	99.73
KOG1865|consensus	545		99.73
cd02668	324	Peptidase_C19L A subfamily of Peptidase C19. Pepti	99.72
KOG1873|consensus	877		99.72
cd02663	300	Peptidase_C19G A subfamily of Peptidase C19. Pepti	99.67
cd02664	327	Peptidase_C19H A subfamily of Peptidase C19. Pepti	99.66
cd02659	334	peptidase_C19C A subfamily of Peptidase C19. Pepti	99.64
cd02667	279	Peptidase_C19K A subfamily of Peptidase C19. Pepti	99.6
COG5533	415	UBP5 Ubiquitin C-terminal hydrolase [Posttranslati	99.59
KOG1868|consensus	653		99.5
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	99.42
KOG1867|consensus	492		99.34
KOG1863|consensus	1093		99.31
KOG1870|consensus	842		99.28
cd02662	240	Peptidase_C19F A subfamily of Peptidase C19. Pepti	99.22
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.15
KOG1872|consensus	473		98.93
PF13423	295	UCH_1: Ubiquitin carboxyl-terminal hydrolase	98.84
KOG2026|consensus	442		98.65
cd02672	268	Peptidase_C19P A subfamily of Peptidase C19. Pepti	98.6
KOG1866|consensus	944		98.46
cd02674	230	Peptidase_C19R A subfamily of peptidase C19. Pepti	98.33
KOG1871|consensus	420		98.21
cd02257	255	Peptidase_C19 Peptidase C19 contains ubiquitinyl h	98.2
KOG1864|consensus	587		97.45
cd02665	228	Peptidase_C19I A subfamily of Peptidase C19. Pepti	97.37
cd02673	245	Peptidase_C19Q A subfamily of Peptidase C19. Pepti	96.84
KOG1275|consensus	1118		96.67
KOG4598|consensus	1203		95.76
PF05408	193	Peptidase_C28: Foot-and-mouth virus L-proteinase;	94.38
KOG1864|consensus	587		86.02
cd02670	241	Peptidase_C19N A subfamily of Peptidase C19. Pepti	81.4

>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=2.2e-21  Score=162.28  Aligned_cols=92  Identities=34%  Similarity=0.690  Sum_probs=85.5

Q ss_pred             CCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhcc---CCCchhHHHHHHHHHHHHHHcCCCCccChHHHHH
Q psy7178          63 QRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLK---SSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQ  139 (154)
Q Consensus        63 ~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~---~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~  139 (154)
                      ..|.+||+|+||||||||.||||.|+++||+||+...+....+   +.+.++.++.+++.|++.++.++..++.|..|+.
T Consensus       262 e~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~  341 (823)
T COG5560         262 EAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKK  341 (823)
T ss_pred             hccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHH
Confidence            3588999999999999999999999999999999988876654   4667889999999999999999999999999999


Q ss_pred             HHHhhCCCCCCCCCC
Q psy7178         140 ILGVHYPQFKDYRQV  154 (154)
Q Consensus       140 ~l~~~~~~F~~~~Qq  154 (154)
                      .|++.+..|.|+.||
T Consensus       342 tIG~fn~~fsGy~QQ  356 (823)
T COG5560         342 TIGSFNEEFSGYDQQ  356 (823)
T ss_pred             HHhhhHHHhcCccch
Confidence            999999999999998

>cd02658 Peptidase_C19B A subfamily of Peptidase C19

Probab=99.82  E-value=1.4e-20  Score=149.21  Aligned_cols=87  Identities=28%  Similarity=0.486  Sum_probs=72.7

Q ss_pred             ccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCC--------------CccC
Q psy7178          68 GLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQY--------------SIVH  133 (154)
Q Consensus        68 GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~--------------~~i~  133 (154)
                      ||.|+||||||||+||||+|+|+|+++|+...............+++++|++|+..|+.++.              ..++
T Consensus         1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~   80 (311)
T cd02658           1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK   80 (311)
T ss_pred             CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence            89999999999999999999999999998744332222222346899999999999987542              3689


Q ss_pred             hHHHHHHHHhhCCCCCCCCCC
Q psy7178         134 PSDFKQILGVHYPQFKDYRQV  154 (154)
Q Consensus       134 P~~~~~~l~~~~~~F~~~~Qq  154 (154)
                      |..|+.++++.+|.|.++.||
T Consensus        81 p~~~~~~l~~~~~~f~~~~Qq  101 (311)
T cd02658          81 PSMFKALIGKGHPEFSTMRQQ  101 (311)
T ss_pred             cHHHHHHHhccChhhcccccc
Confidence            999999999999999999997

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02669 Peptidase_C19M A subfamily of Peptidase C19

Probab=99.81  E-value=1.1e-19  Score=150.97  Aligned_cols=93  Identities=23%  Similarity=0.337  Sum_probs=78.7

Q ss_pred             CccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCC--CCccChHHH
Q psy7178          60 NCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQ--YSIVHPSDF  137 (154)
Q Consensus        60 ~~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~--~~~i~P~~~  137 (154)
                      ..+.+|++||.|+||||||||+||+|+|+|+||++|+...+....  .....+++++|+.+++.+|+..  +..++|.+|
T Consensus       113 ~~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~--~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~f  190 (440)
T cd02669         113 KPYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENI--KDRKSELVKRLSELIRKIWNPRNFKGHVSPHEL  190 (440)
T ss_pred             CCccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccc--cCCCcHHHHHHHHHHHHHhccccCCCccCHHHH
Confidence            466789999999999999999999999999999999986654321  1123689999999999999864  578999999


Q ss_pred             HHHHHhhC-CCCCCCCCC
Q psy7178         138 KQILGVHY-PQFKDYRQV  154 (154)
Q Consensus       138 ~~~l~~~~-~~F~~~~Qq  154 (154)
                      +..++... +.|.++.||
T Consensus       191 l~~l~~~~~~~f~~~~Qq  208 (440)
T cd02669         191 LQAVSKVSKKKFSITEQS  208 (440)
T ss_pred             HHHHHhhcccccCCcccC
Confidence            99998864 689999997

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02660 Peptidase_C19D A subfamily of Peptidase C19

Probab=99.79  E-value=2.4e-19  Score=143.02  Aligned_cols=88  Identities=28%  Similarity=0.383  Sum_probs=74.2

Q ss_pred             cccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHH-cCCCCccChHHHHHHHHhhC
Q psy7178          67 CGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMW-SGQYSIVHPSDFKQILGVHY  145 (154)
Q Consensus        67 ~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~-~~~~~~i~P~~~~~~l~~~~  145 (154)
                      +||.|+||||||||+||+|+|+|+|+++++...+...........++.++|++|+..|+ ++....+.|..|+..+++..
T Consensus         1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~   80 (328)
T cd02660           1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWKHS   80 (328)
T ss_pred             CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhc
Confidence            69999999999999999999999999999987654311111234689999999999995 44567899999999999999


Q ss_pred             CCCCCCCCC
Q psy7178         146 PQFKDYRQV  154 (154)
Q Consensus       146 ~~F~~~~Qq  154 (154)
                      +.|.++.||
T Consensus        81 ~~f~~~~Qq   89 (328)
T cd02660          81 RNLAGYSQQ   89 (328)
T ss_pred             hhhcccccc
Confidence            999999887

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02657 Peptidase_C19A A subfamily of Peptidase C19

Probab=99.77  E-value=1.6e-18  Score=137.11  Aligned_cols=85  Identities=31%  Similarity=0.518  Sum_probs=71.5

Q ss_pred             ccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHHHHhhCCC
Q psy7178          68 GLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQILGVHYPQ  147 (154)
Q Consensus        68 GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~l~~~~~~  147 (154)
                      ||.|+||||||||+||+|+|+|+|+++++....... .......+++++|++|+..|+.+. ..++|.+|+..+++..+.
T Consensus         1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~l~~L~~~l~~~~-~~i~p~~~~~~l~~~~~~   78 (305)
T cd02657           1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARR-GANQSSDNLTNALRDLFDTMDKKQ-EPVPPIEFLQLLRMAFPQ   78 (305)
T ss_pred             CcccccchhHHHHHHHHHhCCHHHHHHHHhcccccc-ccccchhHHHHHHHHHHHHHHhCC-CcCCcHHHHHHHHHHCcC
Confidence            899999999999999999999999999998665421 111234799999999999999876 489999999999999999


Q ss_pred             CC------CCCCC
Q psy7178         148 FK------DYRQV  154 (154)
Q Consensus       148 F~------~~~Qq  154 (154)
                      |.      +++||
T Consensus        79 f~~~~~~~~~~Qq   91 (305)
T cd02657          79 FAEKQNQGGYAQQ   91 (305)
T ss_pred             cccccCCCCcccc
Confidence            95      34676

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG0944|consensus

Probab=99.76  E-value=8.9e-19  Score=147.35  Aligned_cols=104  Identities=26%  Similarity=0.427  Sum_probs=88.4

Q ss_pred             cccCCCCcCCccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCC
Q psy7178          51 ISEDNDVSDNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYS  130 (154)
Q Consensus        51 ~~~~~~~~~~~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~  130 (154)
                      +.|++...++..++|++||.|+||+||||||+|+|+.++.|...+......-.+......+.+-++|.+|++.|.+++++
T Consensus       292 ~~esg~~l~p~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys  371 (763)
T KOG0944|consen  292 LEESGAPLEPLFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYS  371 (763)
T ss_pred             eccCCCccccccCCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCccc
Confidence            55677777889999999999999999999999999999999988877632222233345689999999999999988543


Q ss_pred             ----------ccChHHHHHHHHhhCCCCCCCCCC
Q psy7178         131 ----------IVHPSDFKQILGVHYPQFKDYRQV  154 (154)
Q Consensus       131 ----------~i~P~~~~~~l~~~~~~F~~~~Qq  154 (154)
                                -|+|..|+.++++-+|.|+..+||
T Consensus       372 ~p~~~~~~qngIsP~mFK~~igknHpeFst~~QQ  405 (763)
T KOG0944|consen  372 KPLMDPSNQNGISPLMFKALIGKNHPEFSTNRQQ  405 (763)
T ss_pred             CccCCccccCCcCHHHHHHHHcCCCccccchhhh
Confidence                      489999999999999999999998

>cd02666 Peptidase_C19J A subfamily of Peptidase C19

Probab=99.74  E-value=3.1e-18  Score=138.14  Aligned_cols=77  Identities=23%  Similarity=0.360  Sum_probs=62.1

Q ss_pred             ccccccCCcchHHHHHHHHHhcchHHHHHHhccccchh-------c-c----CC------CchhHHHHHHHHHHHHHHcC
Q psy7178          66 VCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDS-------L-K----SS------SACSSLVDEFALLVRKMWSG  127 (154)
Q Consensus        66 ~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~-------~-~----~~------~~~~~l~~~l~~l~~~~~~~  127 (154)
                      ++||.|+||||||||+||+|+++|+||++++.......       . .    ..      .....++.+|+.||..|+.+
T Consensus         1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s   80 (343)
T cd02666           1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS   80 (343)
T ss_pred             CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence            58999999999999999999999999999998652211       0 0    00      01237999999999999998


Q ss_pred             CCCccChHHHHHHHH
Q psy7178         128 QYSIVHPSDFKQILG  142 (154)
Q Consensus       128 ~~~~i~P~~~~~~l~  142 (154)
                      ...++.|..++..++
T Consensus        81 ~~~~v~P~~~l~~l~   95 (343)
T cd02666          81 NTRSVTPSKELAYLA   95 (343)
T ss_pred             CCCccCcHHHHHhcc
Confidence            889999999987654

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02671 Peptidase_C19O A subfamily of Peptidase C19

Probab=99.74  E-value=5.2e-18  Score=136.39  Aligned_cols=90  Identities=20%  Similarity=0.254  Sum_probs=67.8

Q ss_pred             CCccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHHHH
Q psy7178          59 DNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFK  138 (154)
Q Consensus        59 ~~~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~  138 (154)
                      ++....+++||.|+||||||||+||+|+|+|+|++.+++......      .......+..++..++......+.|..|+
T Consensus        17 ~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~------~~~~~q~~~~~l~~~~~~~~~~~~P~~~~   90 (332)
T cd02671          17 KRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLIS------SVEQLQSSFLLNPEKYNDELANQAPRRLL   90 (332)
T ss_pred             ccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcccC------cHHHHHHHHHHHHHHHhhcccccCHHHHH
Confidence            445678999999999999999999999999999999876531110      01112223334455665544567899999


Q ss_pred             HHHHhhCCCCCCCCCC
Q psy7178         139 QILGVHYPQFKDYRQV  154 (154)
Q Consensus       139 ~~l~~~~~~F~~~~Qq  154 (154)
                      +.+++.+|.|.++.||
T Consensus        91 ~~l~~~~~~f~~~~QQ  106 (332)
T cd02671          91 NALREVNPMYEGYLQH  106 (332)
T ss_pred             HHHHHhccccCCcccc
Confidence            9999999999999998

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02661 Peptidase_C19E A subfamily of Peptidase C19

Probab=99.74  E-value=5.4e-18  Score=133.23  Aligned_cols=87  Identities=23%  Similarity=0.313  Sum_probs=75.5

Q ss_pred             ccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHHHHhhC
Q psy7178          66 VCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQILGVHY  145 (154)
Q Consensus        66 ~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~l~~~~  145 (154)
                      ++||.|+||||||||+||+|+|+|+|++++++..+.....  ....++.++|+.++..++..+...+.|..|.+.+.+..
T Consensus         1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~~   78 (304)
T cd02661           1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCC--NEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQIS   78 (304)
T ss_pred             CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhcc--CCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHHHH
Confidence            4899999999999999999999999999998765543222  22368999999999999987778899999999999999


Q ss_pred             CCCCCCCCC
Q psy7178         146 PQFKDYRQV  154 (154)
Q Consensus       146 ~~F~~~~Qq  154 (154)
                      +.|..+.||
T Consensus        79 ~~f~~~~qq   87 (304)
T cd02661          79 KHFRIGRQE   87 (304)
T ss_pred             HhhcCcchh
Confidence            999999987

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.73  E-value=5.3e-18  Score=129.47  Aligned_cols=89  Identities=28%  Similarity=0.520  Sum_probs=74.2

Q ss_pred             ccccccCCcchHHHHHHHHHhcchHHHHHHhccccchh---ccCCCchhHHHHHHHHHHHHHHcC--CCCccChHHHHHH
Q psy7178          66 VCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDS---LKSSSACSSLVDEFALLVRKMWSG--QYSIVHPSDFKQI  140 (154)
Q Consensus        66 ~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~---~~~~~~~~~l~~~l~~l~~~~~~~--~~~~i~P~~~~~~  140 (154)
                      ++||.|.||||||||+||+|+++|+|+++++.......   .........+.++|+.++..|+..  ....+.|..|+..
T Consensus         1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~   80 (269)
T PF00443_consen    1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA   80 (269)
T ss_dssp             --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred             CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence            48999999999999999999999999999998632221   122223468999999999999988  6788999999999


Q ss_pred             HHhhCCCCCCCCCC
Q psy7178         141 LGVHYPQFKDYRQV  154 (154)
Q Consensus       141 l~~~~~~F~~~~Qq  154 (154)
                      ++...+.|.++.||
T Consensus        81 l~~~~~~~~~~~qq   94 (269)
T PF00443_consen   81 LSSINPSFSNGEQQ   94 (269)
T ss_dssp             HHHHCGGGGSSSTE
T ss_pred             cccccccccccccc
Confidence            99999999998886

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....

>KOG1865|consensus

Probab=99.73  E-value=1.8e-17  Score=137.44  Aligned_cols=91  Identities=24%  Similarity=0.318  Sum_probs=81.5

Q ss_pred             ccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHH
Q psy7178          61 CAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQI  140 (154)
Q Consensus        61 ~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~  140 (154)
                      ......+||.|+|||||+|||||||.++|+|.+||++..+...+...  ..|++|+|+..+..-......+++|..|+..
T Consensus       103 ~~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~--~~C~lc~~q~hi~~A~~~~g~pisP~~i~s~  180 (545)
T KOG1865|consen  103 RPAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRA--KFCMLCTFQAHITRALHNPGHPISPSQILSN  180 (545)
T ss_pred             ccccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhcccc--CeeeehHHHHHHHHHhcCCCCccChHHHHHh
Confidence            45567899999999999999999999999999999999998876532  4899999999887777776669999999999


Q ss_pred             HHhhCCCCCCCCC
Q psy7178         141 LGVHYPQFKDYRQ  153 (154)
Q Consensus       141 l~~~~~~F~~~~Q  153 (154)
                      |..+..+|+.++|
T Consensus       181 L~~I~~~f~~grQ  193 (545)
T KOG1865|consen  181 LRNISAHFGRGRQ  193 (545)
T ss_pred             hhhhcccccCCch
Confidence            9999999999988

>cd02668 Peptidase_C19L A subfamily of Peptidase C19

Probab=99.72  E-value=1.6e-17  Score=132.85  Aligned_cols=82  Identities=23%  Similarity=0.426  Sum_probs=67.2

Q ss_pred             ccccCCcchHHHHHHHHHhcchHHHHHHhccccchhcc-------CCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHH
Q psy7178          68 GLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLK-------SSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQI  140 (154)
Q Consensus        68 GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~-------~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~  140 (154)
                      ||.|+||||||||+||+|+|+|+|+++++.........       ......+++++|+.||..|+.+...+++|..|++.
T Consensus         1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~   80 (324)
T cd02668           1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA   80 (324)
T ss_pred             CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence            89999999999999999999999999998765432110       00123589999999999999998899999999998


Q ss_pred             HHhhCCCCCCCCCC
Q psy7178         141 LGVHYPQFKDYRQV  154 (154)
Q Consensus       141 l~~~~~~F~~~~Qq  154 (154)
                      ++     |..++||
T Consensus        81 l~-----~~~~~Qq   89 (324)
T cd02668          81 LG-----LDTGQQQ   89 (324)
T ss_pred             hC-----CCCcccc
Confidence            84     6667776

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1873|consensus

Probab=99.72  E-value=1.4e-17  Score=141.47  Aligned_cols=94  Identities=29%  Similarity=0.375  Sum_probs=79.8

Q ss_pred             CccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhc---------------cCCCchhHHHHHHHHHHHHH
Q psy7178          60 NCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSL---------------KSSSACSSLVDEFALLVRKM  124 (154)
Q Consensus        60 ~~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~---------------~~~~~~~~l~~~l~~l~~~~  124 (154)
                      .......+||.|||||||||||||+|..++.|++.|.........               ......+.++.+|+. +..|
T Consensus       199 ~~~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~-~~e~  277 (877)
T KOG1873|consen  199 KRRGYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALAN-LLEM  277 (877)
T ss_pred             ccccccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHh-hhhh
Confidence            356677899999999999999999999999999999987765421               012345789999998 6777


Q ss_pred             HcCCCCccChHHHHHHHHhhCCCCCCCCCC
Q psy7178         125 WSGQYSIVHPSDFKQILGVHYPQFKDYRQV  154 (154)
Q Consensus       125 ~~~~~~~i~P~~~~~~l~~~~~~F~~~~Qq  154 (154)
                      ..+..++++|+.|+..++.++|+|.|++||
T Consensus       278 ~e~~ksv~~Pr~lF~~~C~k~pqF~g~~Qh  307 (877)
T KOG1873|consen  278 SETTKSVITPRTLFGQFCSKAPQFRGYDQH  307 (877)
T ss_pred             hhccCCccCHHHHHHHHHHhCCcccccccc
Confidence            788789999999999999999999999997

>cd02663 Peptidase_C19G A subfamily of Peptidase C19

Probab=99.67  E-value=1.1e-16  Score=126.85  Aligned_cols=64  Identities=25%  Similarity=0.448  Sum_probs=58.8

Q ss_pred             ccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCC--CCccChHHHHHHHHhhC
Q psy7178          68 GLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQ--YSIVHPSDFKQILGVHY  145 (154)
Q Consensus        68 GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~--~~~i~P~~~~~~l~~~~  145 (154)
                      ||.|+||||||||+||+|+|                       .+++++|+.||..||...  ..+++|..|++.+++.+
T Consensus         1 Gl~NlGnTCY~NsvLQ~L~~-----------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~   57 (300)
T cd02663           1 GLENFGNTCYCNSVLQALYF-----------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKREN   57 (300)
T ss_pred             CccCCCcceehhHHHHHhhh-----------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhc
Confidence            89999999999999999987                       468899999999999763  45799999999999999


Q ss_pred             CCCCCCCCC
Q psy7178         146 PQFKDYRQV  154 (154)
Q Consensus       146 ~~F~~~~Qq  154 (154)
                      +.|.++.||
T Consensus        58 ~~f~~~~Qq   66 (300)
T cd02663          58 ELFDNYMHQ   66 (300)
T ss_pred             CCCCCCccc
Confidence            999999998

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02664 Peptidase_C19H A subfamily of Peptidase C19

Probab=99.66  E-value=2.2e-16  Score=126.59  Aligned_cols=81  Identities=27%  Similarity=0.338  Sum_probs=65.6

Q ss_pred             ccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHH-HHHHHHhhCC
Q psy7178          68 GLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSD-FKQILGVHYP  146 (154)
Q Consensus        68 GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~-~~~~l~~~~~  146 (154)
                      ||.|+||||||||+||+|+++|+||+++++.......    ....+..+|+.++..|......++.|.. |+..++  .+
T Consensus         1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~~----~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~--~~   74 (327)
T cd02664           1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLG----DSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR--PP   74 (327)
T ss_pred             CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccccC----CcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--cc
Confidence            8999999999999999999999999999987654211    1256888999999888876666777776 776554  57


Q ss_pred             CCCCCCCC
Q psy7178         147 QFKDYRQV  154 (154)
Q Consensus       147 ~F~~~~Qq  154 (154)
                      .|..+.||
T Consensus        75 ~f~~~~Qq   82 (327)
T cd02664          75 WFTPGSQQ   82 (327)
T ss_pred             ccCCCCcC
Confidence            89988887

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02659 peptidase_C19C A subfamily of Peptidase C19

Probab=99.64  E-value=2.6e-16  Score=125.76  Aligned_cols=87  Identities=15%  Similarity=0.199  Sum_probs=63.5

Q ss_pred             cccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHHHHhh
Q psy7178          65 GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQILGVH  144 (154)
Q Consensus        65 ~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~l~~~  144 (154)
                      |++||.|+||||||||+||+|+++|+|+++++........   ....++.++|+.||..|+.+....+.|..+.......
T Consensus         1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~~---~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~   77 (334)
T cd02659           1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDD---DDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRSFG   77 (334)
T ss_pred             CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcccC---cccccHHHHHHHHHHHHHhCCccccCcchhheeccCC
Confidence            6799999999999999999999999999999986321111   1236799999999999998765555655544121222


Q ss_pred             CCCCCCCCCC
Q psy7178         145 YPQFKDYRQV  154 (154)
Q Consensus       145 ~~~F~~~~Qq  154 (154)
                      ...|..+.||
T Consensus        78 ~~~~~~~~Qq   87 (334)
T cd02659          78 WDSLNTFEQH   87 (334)
T ss_pred             CCCCCcccch
Confidence            3456667665

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02667 Peptidase_C19K A subfamily of Peptidase C19

Probab=99.60  E-value=7.9e-16  Score=120.77  Aligned_cols=30  Identities=50%  Similarity=0.816  Sum_probs=29.2

Q ss_pred             ccccCCcchHHHHHHHHHhcchHHHHHHhc
Q psy7178          68 GLRNLGNTCFMSAGIQSLVAASALVEYFTN   97 (154)
Q Consensus        68 GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~   97 (154)
                      ||.|+||||||||+||+|+|+|+|+++++.
T Consensus         1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~   30 (279)
T cd02667           1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE   30 (279)
T ss_pred             CCcCCCCchHHHHHHHHHhcCHHHHHHHHH
Confidence            899999999999999999999999999987

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=1.7e-15  Score=118.44  Aligned_cols=92  Identities=22%  Similarity=0.277  Sum_probs=73.2

Q ss_pred             CCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhc---cCCCchh-HHHHHHHHHHHHHHcCCCCccChHHHH
Q psy7178          63 QRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSL---KSSSACS-SLVDEFALLVRKMWSGQYSIVHPSDFK  138 (154)
Q Consensus        63 ~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~---~~~~~~~-~l~~~l~~l~~~~~~~~~~~i~P~~~~  138 (154)
                      ...+.||+|.|||||||++||||+.+.++...|....+....   .+.+.++ .....|..|...+..-....|+|..|+
T Consensus        68 n~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~  147 (415)
T COG5533          68 NLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFI  147 (415)
T ss_pred             ccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHH
Confidence            456799999999999999999999999999977765555333   3334445 555666667777766555679999999


Q ss_pred             HHHHhhCCCCCCCCCC
Q psy7178         139 QILGVHYPQFKDYRQV  154 (154)
Q Consensus       139 ~~l~~~~~~F~~~~Qq  154 (154)
                      +.++.++++|.+.-||
T Consensus       148 ~i~~~~n~~fs~dmQq  163 (415)
T COG5533         148 DILSGRNKLFSGDMQQ  163 (415)
T ss_pred             HHHccccccccccchh
Confidence            9999999999998886

>KOG1868|consensus

Probab=99.50  E-value=3.2e-14  Score=122.02  Aligned_cols=94  Identities=32%  Similarity=0.476  Sum_probs=80.2

Q ss_pred             ccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhcc--CCCchhHHHHHHHHHHHHHHcC-CCCccChHHH
Q psy7178          61 CAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLK--SSSACSSLVDEFALLVRKMWSG-QYSIVHPSDF  137 (154)
Q Consensus        61 ~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~--~~~~~~~l~~~l~~l~~~~~~~-~~~~i~P~~~  137 (154)
                      ....+.+||.|+|||||||++||||+.|+.|++.++...+....+  .......+..++..++..+|.+ ....+.|+.|
T Consensus       296 ~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f  375 (653)
T KOG1868|consen  296 TDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRRF  375 (653)
T ss_pred             ccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHHH
Confidence            456789999999999999999999999999998888887766554  2233468888999988888876 5677999999


Q ss_pred             HHHHHhhCCCCCCCCCC
Q psy7178         138 KQILGVHYPQFKDYRQV  154 (154)
Q Consensus       138 ~~~l~~~~~~F~~~~Qq  154 (154)
                      +..+.++.+.|.++.||
T Consensus       376 ~~~~~~y~~~~~~~~Qq  392 (653)
T KOG1868|consen  376 IRVLKRYSPNFSGYSQQ  392 (653)
T ss_pred             HHHHhhccccccccccc
Confidence            99999999999998776

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=1.7e-13  Score=113.18  Aligned_cols=92  Identities=29%  Similarity=0.399  Sum_probs=73.6

Q ss_pred             CCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCC----CCccChHHHH
Q psy7178          63 QRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQ----YSIVHPSDFK  138 (154)
Q Consensus        63 ~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~----~~~i~P~~~~  138 (154)
                      +...+||.|+||+||+|||+|+|+....+...+....+...........++.|++-+|+..|....    ..-++|..|+
T Consensus       300 ps~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk  379 (749)
T COG5207         300 PSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFK  379 (749)
T ss_pred             CCCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHH
Confidence            334899999999999999999999988877666554333222222234799999999999998754    2348999999


Q ss_pred             HHHHhhCCCCCCCCCC
Q psy7178         139 QILGVHYPQFKDYRQV  154 (154)
Q Consensus       139 ~~l~~~~~~F~~~~Qq  154 (154)
                      .++++-++.|+.++||
T Consensus       380 ~~igq~h~eFg~~~QQ  395 (749)
T COG5207         380 MLIGQDHPEFGKFAQQ  395 (749)
T ss_pred             HHHcCCchhhhhhhhh
Confidence            9999999999999998

>KOG1867|consensus

Probab=99.34  E-value=1.6e-12  Score=109.09  Aligned_cols=93  Identities=30%  Similarity=0.456  Sum_probs=82.2

Q ss_pred             ccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCC-CCccChHHHHH
Q psy7178          61 CAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQ-YSIVHPSDFKQ  139 (154)
Q Consensus        61 ~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~i~P~~~~~  139 (154)
                      ....++.||+|+|+|||||++||+|.|.+..++..+...+...... ....++.+++.++++.+|++. ..++.|..+++
T Consensus       156 ~~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~-~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~  234 (492)
T KOG1867|consen  156 TTALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSS-SGSSCLVCDLDRLFQALYSGHNRTPYSPFELLN  234 (492)
T ss_pred             eeeecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCC-CCCcchhhhhhhhhhHhhcCCCCCCcChHHHHH
Confidence            4667899999999999999999999999999998888877732221 225799999999999999998 89999999999


Q ss_pred             HHHhhCCCCCCCCCC
Q psy7178         140 ILGVHYPQFKDYRQV  154 (154)
Q Consensus       140 ~l~~~~~~F~~~~Qq  154 (154)
                      .+++..|+|.|+.||
T Consensus       235 ~~~k~~~~~~g~~Qq  249 (492)
T KOG1867|consen  235 LVWKHSPNLAGYEQQ  249 (492)
T ss_pred             HHHHhCccccccccc
Confidence            999999999999997

>KOG1863|consensus

Probab=99.31  E-value=2.7e-12  Score=116.59  Aligned_cols=89  Identities=19%  Similarity=0.258  Sum_probs=71.8

Q ss_pred             cCCcc-cccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHH
Q psy7178          62 AQRGV-CGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQI  140 (154)
Q Consensus        62 ~~~~~-~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~  140 (154)
                      ...+. +||.|+|+||||||+||+|+.++.||+.+.+........  .....+..+|+.||..|..++.++|.+.+|...
T Consensus       165 ~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~--~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~~  242 (1093)
T KOG1863|consen  165 RLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHE--DPRRSIPLALQRLFYELQMSKRKYVDTSELTKS  242 (1093)
T ss_pred             hcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCcc--cccchHHHHHHHHHHHHhhcCCCCcCchhhhhh
Confidence            34455 999999999999999999999999999999987421111  223569999999999999999889999999999


Q ss_pred             HHhhCCCCCCCCCC
Q psy7178         141 LGVHYPQFKDYRQV  154 (154)
Q Consensus       141 l~~~~~~F~~~~Qq  154 (154)
                      +....  ..++.||
T Consensus       243 ~~~~~--~~~~~Qq  254 (1093)
T KOG1863|consen  243 LGWDS--NDSFEQQ  254 (1093)
T ss_pred             hhccc--ccHHhhh
Confidence            87765  4444444

>KOG1870|consensus

Probab=99.28  E-value=3.2e-12  Score=113.47  Aligned_cols=95  Identities=34%  Similarity=0.651  Sum_probs=84.6

Q ss_pred             CccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhc---cCCCchhHHHHHHHHHHHHHHcCCCCccChHH
Q psy7178          60 NCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSL---KSSSACSSLVDEFALLVRKMWSGQYSIVHPSD  136 (154)
Q Consensus        60 ~~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~---~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~  136 (154)
                      ....+|.+||.|+|||||||+.+|||.+.+.++++++...+....   ++.+..+.+...+..++..+|.+....+.|..
T Consensus       240 ~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~  319 (842)
T KOG1870|consen  240 SPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTS  319 (842)
T ss_pred             CCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchh
Confidence            345689999999999999999999999999999999987776632   34556688999999999999999877899999


Q ss_pred             HHHHHHhhCCCCCCCCCC
Q psy7178         137 FKQILGVHYPQFKDYRQV  154 (154)
Q Consensus       137 ~~~~l~~~~~~F~~~~Qq  154 (154)
                      +...+..++++|.|+.||
T Consensus       320 ~~~~~~~~a~~~~g~~q~  337 (842)
T KOG1870|consen  320 FRTSLASFASEFSGYGQQ  337 (842)
T ss_pred             hhhhhhhccccccCcccc
Confidence            999999999999999987

>cd02662 Peptidase_C19F A subfamily of Peptidase C19

Probab=99.22  E-value=1.2e-11  Score=95.22  Aligned_cols=32  Identities=47%  Similarity=0.821  Sum_probs=30.7

Q ss_pred             ccccCCcchHHHHHHHHHhcchHHHHHHhccc
Q psy7178          68 GLRNLGNTCFMSAGIQSLVAASALVEYFTNKS   99 (154)
Q Consensus        68 GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~   99 (154)
                      ||+|+||||||||+||+|+|+|+|++++.+..
T Consensus         1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~   32 (240)
T cd02662           1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL   32 (240)
T ss_pred             CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH
Confidence            89999999999999999999999999999865

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=5.4e-11  Score=102.30  Aligned_cols=76  Identities=21%  Similarity=0.328  Sum_probs=63.0

Q ss_pred             CccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHHHHH
Q psy7178          60 NCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQ  139 (154)
Q Consensus        60 ~~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~  139 (154)
                      .....|++||+|.|.||||||+||+|+.+..||+.+.........    ....+..+|+++|..|..++ .+++..+|..
T Consensus       187 SKkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~p~----grdSValaLQr~Fynlq~~~-~PvdTteltr  261 (1089)
T COG5077         187 SKKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHPR----GRDSVALALQRLFYNLQTGE-EPVDTTELTR  261 (1089)
T ss_pred             cccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCCCC----ccchHHHHHHHHHHHHhccC-CCcchHHhhh
Confidence            356789999999999999999999999999999999887654332    23689999999999999887 6677777664


Q ss_pred             H
Q psy7178         140 I  140 (154)
Q Consensus       140 ~  140 (154)
                      .
T Consensus       262 s  262 (1089)
T COG5077         262 S  262 (1089)
T ss_pred             h
Confidence            4

>KOG1872|consensus

Probab=98.93  E-value=3.4e-10  Score=92.92  Aligned_cols=85  Identities=26%  Similarity=0.365  Sum_probs=69.6

Q ss_pred             CcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhcc-CCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHHHH
Q psy7178          64 RGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLK-SSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQILG  142 (154)
Q Consensus        64 ~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~-~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~l~  142 (154)
                      .-.+||.|+|||||||+.+|||-..+++...+.......... .......++.+++.+|+.|.++  ..+.|..++..++
T Consensus       103 ~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~--~~v~pi~llqtl~  180 (473)
T KOG1872|consen  103 PLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK--GAVAPINLLQTLS  180 (473)
T ss_pred             cCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc--CCcchHHHHHHHH
Confidence            445799999999999999999999999998887655332211 1112467889999999999988  7899999999999


Q ss_pred             hhCCCCCC
Q psy7178         143 VHYPQFKD  150 (154)
Q Consensus       143 ~~~~~F~~  150 (154)
                      +.+|+|..
T Consensus       181 ~~~Pqfa~  188 (473)
T KOG1872|consen  181 SQYPQFAE  188 (473)
T ss_pred             HHhHHHHH
Confidence            99999976

>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase

Probab=98.84  E-value=8.9e-09  Score=81.44  Aligned_cols=72  Identities=18%  Similarity=0.161  Sum_probs=62.2

Q ss_pred             cccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHH-cCCCCccChHHHHHHHHhh
Q psy7178          67 CGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMW-SGQYSIVHPSDFKQILGVH  144 (154)
Q Consensus        67 ~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~-~~~~~~i~P~~~~~~l~~~  144 (154)
                      .||.|.+++||+||+||+|+.+|++++.++... .  +.+   ..+|.++|.-||+.|. .++.....+..|+++++..
T Consensus         1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~-~--c~~---e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~~   73 (295)
T PF13423_consen    1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL-E--CPK---EFCLLCELGFLFDMLDSKAKGINCQASNFLRALSWI   73 (295)
T ss_pred             CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc-C--CCc---cccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhcC
Confidence            599999999999999999999999999999876 2  211   3799999999999999 7776778888999888765

>KOG2026|consensus

Probab=98.65  E-value=6.1e-08  Score=78.19  Aligned_cols=89  Identities=25%  Similarity=0.355  Sum_probs=73.9

Q ss_pred             CccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCC--CCccChHHH
Q psy7178          60 NCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQ--YSIVHPSDF  137 (154)
Q Consensus        60 ~~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~--~~~i~P~~~  137 (154)
                      ..+.+|.+||.|+-++-|+|++||.|.|.+++|+|++......     +....++..|..+++++|+.+  +..++|.+|
T Consensus       128 ~tYLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n~~-----d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~  202 (442)
T KOG2026|consen  128 STYLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEENYF-----DNLTELVQRLGELIRKLWNPRNFKGHVSPHEF  202 (442)
T ss_pred             CcceeeeeccchhhhHHHHHHHHHHHhccchhhhhhccccccc-----chhHHHHHHHHHHHHHhcChhhhcccCCHHHH
Confidence            4678999999999999999999999999999999999874422     234789999999999999864  467999999


Q ss_pred             HHHHHhh-CCCCCCCCC
Q psy7178         138 KQILGVH-YPQFKDYRQ  153 (154)
Q Consensus       138 ~~~l~~~-~~~F~~~~Q  153 (154)
                      ++++... ...|.-.+|
T Consensus       203 lqaV~~~s~k~f~i~~q  219 (442)
T KOG2026|consen  203 LQAVMKLSKKRFRIGQQ  219 (442)
T ss_pred             HHHHHHHhhhheecCCC
Confidence            9988663 455666655

>cd02672 Peptidase_C19P A subfamily of Peptidase C19

Probab=98.60  E-value=4.9e-08  Score=76.58  Aligned_cols=57  Identities=16%  Similarity=0.139  Sum_probs=43.2

Q ss_pred             CCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHH
Q psy7178          63 QRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKM  124 (154)
Q Consensus        63 ~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~  124 (154)
                      ..+.+||.|+|.+||+|++||+|+++|+||+++........     ...++.++|..||..+
T Consensus        12 ~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~~~~~~~-----~~~~l~~el~~lfs~~   68 (268)
T cd02672          12 KTNYAGLENHITNSYCNSLLQLLYFIPPFRNFTAIILVACP-----KESCLLCELGYLFSTL   68 (268)
T ss_pred             cccccccccCCccchHHHHHHHHHhcHHHHHHHHhhcccCC-----cCccHHHHHHHHHHHH
Confidence            34689999999999999999999999999998332222111     1368888888887443

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1866|consensus

Probab=98.46  E-value=1.7e-07  Score=80.92  Aligned_cols=83  Identities=22%  Similarity=0.337  Sum_probs=64.9

Q ss_pred             ccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHH
Q psy7178          61 CAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQI  140 (154)
Q Consensus        61 ~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~  140 (154)
                      ....+.+||+|-|+|||||+++|-|.++|.+++.++................+.++++.+|..+..++-.++-|..|-+.
T Consensus        90 Rpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~Wk~  169 (944)
T KOG1866|consen   90 RPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGFWKQ  169 (944)
T ss_pred             CCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHH
Confidence            44678999999999999999999999999999988776555221111122449999999999999888788888877766


Q ss_pred             HHh
Q psy7178         141 LGV  143 (154)
Q Consensus       141 l~~  143 (154)
                      ++-
T Consensus       170 Fr~  172 (944)
T KOG1866|consen  170 FRL  172 (944)
T ss_pred             hhc
Confidence            544

>cd02674 Peptidase_C19R A subfamily of peptidase C19

Probab=98.33  E-value=5.1e-07  Score=68.32  Aligned_cols=20  Identities=65%  Similarity=1.089  Sum_probs=19.2

Q ss_pred             ccccCCcchHHHHHHHHHhc
Q psy7178          68 GLRNLGNTCFMSAGIQSLVA   87 (154)
Q Consensus        68 GL~NlGNTCy~NSvLQ~L~~   87 (154)
                      ||.|.||+||+||+||+|.+
T Consensus         1 gl~n~~~~cy~n~~~Q~l~~   20 (230)
T cd02674           1 GLRNLGNTCYMNSILQCLSA   20 (230)
T ss_pred             CccccCcchhhhHHHHHHHH
Confidence            89999999999999999976

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1871|consensus

Probab=98.21  E-value=1.2e-06  Score=70.86  Aligned_cols=64  Identities=17%  Similarity=0.141  Sum_probs=48.2

Q ss_pred             ccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHH
Q psy7178          61 CAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMW  125 (154)
Q Consensus        61 ~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~  125 (154)
                      .....++|+.|-||.|||||+||+|+.|++|.+.+.... +..........+++.++..+...+.
T Consensus        23 p~~i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~-~~~~~~~~~stp~lda~~~~~~df~   86 (420)
T KOG1871|consen   23 PVPIDPRGSINKCNICFMNSILQALLYCSPFYNLLELIK-RADGTVKEGSTPLLDASRPASSDFN   86 (420)
T ss_pred             ccccCCccccccceeEeeHHHHHHHHhCccHHHHHHhhh-hhcCceecccchhHHHHHHHHhhcc
Confidence            344788999999999999999999999999999887655 2221111334677777777776665

>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases

Probab=98.20  E-value=1.6e-06  Score=64.83  Aligned_cols=20  Identities=50%  Similarity=1.024  Sum_probs=19.6

Q ss_pred             ccccCCcchHHHHHHHHHhc
Q psy7178          68 GLRNLGNTCFMSAGIQSLVA   87 (154)
Q Consensus        68 GL~NlGNTCy~NSvLQ~L~~   87 (154)
                      ||.|.||+||+||+||+|++
T Consensus         1 Gl~N~~n~Cy~ns~lq~l~~   20 (255)
T cd02257           1 GLNNLGNTCYLNSVLQALFS   20 (255)
T ss_pred             CccccCcchHHhHHHHHHHH
Confidence            89999999999999999998

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1864|consensus

Probab=97.45  E-value=0.00014  Score=62.75  Aligned_cols=29  Identities=28%  Similarity=0.576  Sum_probs=26.7

Q ss_pred             cccCCcchHHHHHHHHHhcchHHHHHHhc
Q psy7178          69 LRNLGNTCFMSAGIQSLVAASALVEYFTN   97 (154)
Q Consensus        69 L~NlGNTCy~NSvLQ~L~~~p~f~~~l~~   97 (154)
                      |+|.||+||.|++||+|..++.|+.-+..
T Consensus        34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~   62 (587)
T KOG1864|consen   34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQ   62 (587)
T ss_pred             EeecCCchhhhhHHHHHhhccHHHHHHHH
Confidence            99999999999999999999999876654

>cd02665 Peptidase_C19I A subfamily of Peptidase C19

Probab=97.37  E-value=0.00013  Score=55.96  Aligned_cols=22  Identities=59%  Similarity=0.967  Sum_probs=20.4

Q ss_pred             ccccCCcchHHHHHHHHHhcch
Q psy7178          68 GLRNLGNTCFMSAGIQSLVAAS   89 (154)
Q Consensus        68 GL~NlGNTCy~NSvLQ~L~~~p   89 (154)
                      ||.|.||||++|++.|+|++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~Q   22 (228)
T cd02665           1 GLKNVGNTCWFSAVIQSLFSQQ   22 (228)
T ss_pred             CccccCcchhHHHHHHHHHHHH
Confidence            8999999999999999999853

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02673 Peptidase_C19Q A subfamily of Peptidase C19

Probab=96.84  E-value=0.0011  Score=51.32  Aligned_cols=33  Identities=27%  Similarity=0.587  Sum_probs=26.7

Q ss_pred             cccCCcchHHHHHHHHHhcchHHHHHHhccccc
Q psy7178          69 LRNLGNTCFMSAGIQSLVAASALVEYFTNKSEE  101 (154)
Q Consensus        69 L~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~  101 (154)
                      |.|.||.||+|+.+|+|.++-.....|......
T Consensus         2 ~~~~~~~~~~~~~~~~~~~i~~~~~~F~~~~QQ   34 (245)
T cd02673           2 LVNTGNSCYFNSTMQALSSIGKINTEFDNDDQQ   34 (245)
T ss_pred             ceecCCeeeehhHHHHHHHHhhhhhhcCCCchh
Confidence            789999999999999999877666666555443

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1275|consensus

Probab=96.67  E-value=0.0062  Score=54.55  Aligned_cols=74  Identities=15%  Similarity=0.088  Sum_probs=60.6

Q ss_pred             CcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHHHHh
Q psy7178          64 RGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQILGV  143 (154)
Q Consensus        64 ~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~l~~  143 (154)
                      .-++||.-.+-.-|.|++||.|+.+|++|..+++.....       ..|+.|+|.-||..|..+.-.......|+.+++.
T Consensus       497 T~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~C~~-------e~CL~CELGFLF~Ml~~S~G~~Cqa~NFlraf~t  569 (1118)
T KOG1275|consen  497 TTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHICTK-------EFCLLCELGFLFTMLDSSTGDPCQANNFLRAFRT  569 (1118)
T ss_pred             ceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCccch-------hHHHHHHHHHHHHHHhhhcCCccchhHHHHHHhh
Confidence            345688888888899999999999999999999873222       2799999999999999876667888888888765


Q ss_pred             h
Q psy7178         144 H  144 (154)
Q Consensus       144 ~  144 (154)
                      .
T Consensus       570 ~  570 (1118)
T KOG1275|consen  570 N  570 (1118)
T ss_pred             C
Confidence            3

>KOG4598|consensus

Probab=95.76  E-value=0.013  Score=51.42  Aligned_cols=38  Identities=8%  Similarity=-0.018  Sum_probs=34.5

Q ss_pred             ccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhcc
Q psy7178          61 CAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNK   98 (154)
Q Consensus        61 ~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~   98 (154)
                      ..+++++||.|..-|||+|+.+|+|+.+|+|++.+...
T Consensus        82 ~~~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts  119 (1203)
T KOG4598|consen   82 ENGHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTS  119 (1203)
T ss_pred             cCCcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCC
Confidence            45688999999999999999999999999999998753

>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.38  E-value=0.026  Score=41.72  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=16.6

Q ss_pred             CCcccccccCCcchHHHHHHHHHhc
Q psy7178          63 QRGVCGLRNLGNTCFMSAGIQSLVA   87 (154)
Q Consensus        63 ~~~~~GL~NlGNTCy~NSvLQ~L~~   87 (154)
                      ...++|+-|.+|+|++||++|.+-.
T Consensus        30 ~~eft~~PN~~dnCWlNaL~QL~~~   54 (193)
T PF05408_consen   30 KMEFTGLPNNHDNCWLNALLQLFRY   54 (193)
T ss_dssp             --EEE----SSSTHHHHHHHHHHHH
T ss_pred             ceEEecCCCCCCChHHHHHHHHHHH
Confidence            3456799999999999999998755

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.

>KOG1864|consensus

Probab=86.02  E-value=0.84  Score=39.88  Aligned_cols=92  Identities=20%  Similarity=0.100  Sum_probs=62.6

Q ss_pred             cCCcccccccCCcchHHH--HHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcC--CCCccChHHH
Q psy7178          62 AQRGVCGLRNLGNTCFMS--AGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSG--QYSIVHPSDF  137 (154)
Q Consensus        62 ~~~~~~GL~NlGNTCy~N--SvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~--~~~~i~P~~~  137 (154)
                      .....-|..|.+++|+.|  ++.+.+..+..+++..+........ .......+...+..+++..-..  ....+.|..|
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~  306 (587)
T KOG1864|consen  228 ANERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKR-SYIIKEELLTCLLDLFSSISSRKKLVGRISPTRF  306 (587)
T ss_pred             ccccccCccccCccccccchhhHHHHHhhhhhcccccchhhcccc-hhhhhHHHHHHhhhhccchhhhcccccccCcchh
Confidence            345678999999999999  9999999888887555443321110 0011233444444444444433  2345899999


Q ss_pred             HHHHHhhCCCCCCCCCC
Q psy7178         138 KQILGVHYPQFKDYRQV  154 (154)
Q Consensus       138 ~~~l~~~~~~F~~~~Qq  154 (154)
                      ...+++....|..+.||
T Consensus       307 ~~~~~~~~~~f~~~~qQ  323 (587)
T KOG1864|consen  307 ISDLIKENELFTNGMQQ  323 (587)
T ss_pred             hhhhhhcCCccCchhhc
Confidence            99999999999999988

>cd02670 Peptidase_C19N A subfamily of Peptidase C19

Probab=81.40  E-value=0.87  Score=35.30  Aligned_cols=20  Identities=30%  Similarity=0.611  Sum_probs=18.6

Q ss_pred             ccccCCc-chHHHHHHHHHhc
Q psy7178          68 GLRNLGN-TCFMSAGIQSLVA   87 (154)
Q Consensus        68 GL~NlGN-TCy~NSvLQ~L~~   87 (154)
                      |..|.+| +|||-|+|=+||.
T Consensus         1 g~~~~~~~~cy~d~~~~~~f~   21 (241)
T cd02670           1 GAQNHCNVSCYLDALLFAMFA   21 (241)
T ss_pred             CCccccCceeehHHHHHHHHH
Confidence            7889999 9999999999987

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	154
3n3k_A	396	The Catalytic Domain Of Usp8 In Complex With A Usp8		1e-10
2y6e_A	367	Ubiquitin Specific Protease 4 Is Inhibited By Its U		8e-10
2gfo_A	396	Structure Of The Catalytic Domain Of Human Ubiquiti		1e-09
2ibi_A	374	Covalent Ubiquitin-Usp2 Complex Length = 374		1e-08
2hd5_A	359	Usp2 In Complex With Ubiquitin Length = 359		1e-08
3v6c_A	367	Crystal Structure Of Usp2 In Complex With Mutated U		1e-08
3nhe_A	348	High Resolution Structure (1.26a) Of Usp2a In Compl		2e-07
3i3t_A	355	Crystal Structure Of Covalent Ubiquitin-usp21 Compl		3e-05
3mtn_A	373	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		3e-05
2y5b_A	370	Structure Of Usp21 In Complex With Linear Diubiquit		3e-05

>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 65  GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTN---XXXXXXXXXXXXXXXXVDEFALLV 121
            + GLRNLGNTC+M++ +Q L  A  L +YF                      +EF +++
Sbjct: 61  ALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIM 120
Query: 122 RKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
           + +W+GQY  + P DFK  +G    QF  Y Q
Sbjct: 121 KALWTGQYRYISPKDFKITIGKINDQFAGYSQ 152

>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 63  QRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNXXXXXXXXXXX---XXXXXVDEFAL 119
           Q G+CGL NLGNT FM++ +Q L   + L +YF                      + +A 
Sbjct: 5   QPGLCGLGNLGNTXFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAE 64
Query: 120 LVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
           L+++MWSG+ + V P  FK  +G   PQF  Y+Q
Sbjct: 65  LIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQ 98

>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 65  GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTN---XXXXXXXXXXXXXXXXVDEFALLV 121
            + GLRNLGNTC+ ++ +Q L  A  L +YF                      +EF ++ 
Sbjct: 61  ALTGLRNLGNTCYXNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIX 120
Query: 122 RKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
           + +W+GQY  + P DFK  +G    QF  Y Q
Sbjct: 121 KALWTGQYRYISPKDFKITIGKINDQFAGYSQ 152

>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 52  SEDNDVSDNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEY-FTNXXXXXXXXXXXXX 110
           S   D  ++ + +G+ GLRNLGNTCFM++ +Q L     L +Y                 
Sbjct: 21  SPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAH 80
Query: 111 XXXVDEFALLVRKMW-SGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
              V+EFA L++ +W S    +V PS+FK  +  + P+F  Y Q
Sbjct: 81  TALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQ 124

>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 64  RGVCGLRNLGNTCFMSAGIQSLVAASALVEY-FTNXXXXXXXXXXXXXXXXVDEFALLVR 122
           +G+ GLRNLGNTCFM++ +Q L     L +Y                    V+EFA L++
Sbjct: 7   QGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQ 66
Query: 123 KMW-SGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
            +W S    +V PS+FK  +  + P+F  Y Q
Sbjct: 67  TIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQ 98

>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 64  RGVCGLRNLGNTCFMSAGIQSLVAASALVEY-FTNXXXXXXXXXXXXXXXXVDEFALLVR 122
           +G+ GLRNLGNTCFM++ +Q L     L +Y                    V+EFA L++
Sbjct: 26  QGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQ 85
Query: 123 KMW-SGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
            +W S    +V PS+FK  +  + P+F  Y Q
Sbjct: 86  TIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQ 117

>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 64  RGVCGLRNLGNTCFMSAGIQSLVAASALVEY-FTNXXXXXXXXXXXXXXXXVDEFALLVR 122
           +G+ GLRNLGNT FM++ +Q L     L +Y                    V+EFA L++
Sbjct: 7   QGLAGLRNLGNTXFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQ 66
Query: 123 KMW-SGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
            +W S    +V PS+FK  +  + P+F  Y Q
Sbjct: 67  TIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQ 98

>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 65  GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNXXXXXXXXXXXXXXXXVDEFALLVRKM 124
           G  GLRNLGNTCF++A +Q L +   L ++                    + FA ++  +
Sbjct: 2   GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGAL 61
Query: 125 WS-GQYSIVHPSDFKQILGVHYPQFKDYRQ 153
           W       V+P+ F+ +   + P F  Y Q
Sbjct: 62  WHPDSCEAVNPTRFRAVFQKYVPSFSGYSQ 91

>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 65  GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNXXXXXXXXXXXXXXXXVDEFALLVRKM 124
           G  GLRNLGNTCF++A +Q L +   L ++                    + FA ++  +
Sbjct: 21  GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGAL 80
Query: 125 WS-GQYSIVHPSDFKQILGVHYPQFKDYRQ 153
           W       V+P+ F+ +   + P F  Y Q
Sbjct: 81  WHPDSCEAVNPTRFRAVFQKYVPSFSGYSQ 110

>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 65  GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNXXXXXXXXXXXXXXXXVDEFALLVRKM 124
           G  GLRNLGNTCF++A +Q L +   L ++                    + FA ++  +
Sbjct: 15  GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGAL 74
Query: 125 WS-GQYSIVHPSDFKQILGVHYPQFKDYRQ 153
           W       V+P+ F+ +   + P F  Y Q
Sbjct: 75  WHPDSCEAVNPTRFRAVFQKYVPSFSGYSQ 104

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	154
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	6e-27
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	8e-25
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	1e-23
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	6e-20
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	2e-19
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	8e-19
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	5e-14
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	5e-11
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	1e-06
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	1e-06

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396

 Score =  103 bits (257), Expect = 6e-27
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 6/143 (4%)

Query: 14  STASAASSFPIPLPPPTSSDVCEGPENFTGELSSLFEISEDNDVSDNCAQRGVCGLRNLG 73
                 S    P     +   C      +   +S      + +     +   + GLRNLG
Sbjct: 13  GLVPRGSPTVTPTVNRENKPTCYPKAEISRLSASQ---IRNLNPVFGGSGPALTGLRNLG 69

Query: 74  NTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSS---LVDEFALLVRKMWSGQYS 130
           NTC+M++ +Q L  A  L +YF     +D +  S+       + +EF ++++ +W+GQY 
Sbjct: 70  NTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYR 129

Query: 131 IVHPSDFKQILGVHYPQFKDYRQ 153
            + P DFK  +G    QF  Y Q
Sbjct: 130 YISPKDFKITIGKINDQFAGYSQ 152

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348

 Score = 96.4 bits (240), Expect = 8e-25
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 2/95 (2%)

Query: 61  CAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSAC-SSLVDEFAL 119
            + +G+ GLRNLGNTCFM++ +Q L     L +Y   +     L   S   ++LV+EFA 
Sbjct: 4   KSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAK 63

Query: 120 LVRKMWSGQY-SIVHPSDFKQILGVHYPQFKDYRQ 153
           L++ +W+     +V PS+FK  +  + P+F  Y Q
Sbjct: 64  LIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQ 98

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367

 Score = 93.5 bits (232), Expect = 1e-23
 Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 63  QRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSS---LVDEFAL 119
           Q G+CGL NLGNTCFM++ +Q L   + L +YF     E  +   +       + + +A 
Sbjct: 5   QPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAE 64

Query: 120 LVRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
           L+++MWSG+ + V P  FK  +G   PQF  Y+Q
Sbjct: 65  LIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQ 98

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355

 Score = 83.5 bits (206), Expect = 6e-20
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 65  GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKM 124
           G  GLRNLGNTCF++A +Q L +   L ++   +     +        L + FA ++  +
Sbjct: 2   GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGAL 61

Query: 125 W-SGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
           W       V+P+ F+ +   + P F  Y Q
Sbjct: 62  WHPDSCEAVNPTRFRAVFQKYVPSFSGYSQ 91

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404

 Score = 82.4 bits (203), Expect = 2e-19
 Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 8/99 (8%)

Query: 62  AQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTN-KSEEDSLKSSSACSSLVDEFALL 120
           A    CGL NLGNTC+M+A +Q + +   L +          +    ++   +      L
Sbjct: 10  AMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDL 69

Query: 121 VRKMWSGQYSIVHPSDFKQILGVHYPQFKD------YRQ 153
              M     SI  P    Q L + +PQF +      Y Q
Sbjct: 70  FDSMDKTSSSIP-PIILLQFLHMAFPQFAEKGEQGQYLQ 107

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854

 Score = 81.1 bits (199), Expect = 8e-19
 Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 21/171 (12%)

Query: 4   ENTWSQDECFSTASAASSFPIPLPPPTSSDVCEGPENFTGELSSLFEISEDNDVSDNCAQ 63
           E+    D   +   +     +     T   + E   +    +     I E          
Sbjct: 282 EDDMVLDPSLAEHLSHFGIDMLKMQKTDKTMTELEIDMNQRIGEWELIQESGVPLKPLFG 341

Query: 64  RGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSS-LVDEFALLVR 122
            G  G+RNLGN+C++++ +Q L +       + +K E+    + +  +     + A L  
Sbjct: 342 PGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGH 401

Query: 123 KMWSGQYSI--------------------VHPSDFKQILGVHYPQFKDYRQ 153
            + SG+YS                     + P  FK ++G  +P+F   RQ
Sbjct: 402 GLLSGEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQ 452

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476

 Score = 67.3 bits (164), Expect = 5e-14
 Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 12/116 (10%)

Query: 50  EISEDNDVSDNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSA 109
           ++     V     + G+ GL N+G+TCFMS+ +Q L+     + +  ++   ++ K  S 
Sbjct: 125 DVCTKTMVPSMERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSP 184

Query: 110 CSSLVDEFALLVRKMWSGQYSI------------VHPSDFKQILGVHYPQFKDYRQ 153
                     +V +++    +                                Y Q
Sbjct: 185 DKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQ 240

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415

 Score = 58.4 bits (140), Expect = 5e-11
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 67  CGLRNLGNTCFMSAGIQSLVAASALVEYF-----TNKSEEDSLKSSSACSSLVDEFALLV 121
            G +N+GNTC+++A +Q+L   + L +       +        +       +V E     
Sbjct: 25  VGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCF 84

Query: 122 RKMWSGQYSIVHPSDFKQILGVHYPQFK 149
             + +  +  V P      L   YPQF 
Sbjct: 85  ENLQNKSFKSVLPVVLLNTLRKCYPQFA 112

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 7/89 (7%)

Query: 65  GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKM 124
           G  GL+N G TC+M++ +Q+L   + L +       E    S S   +L   F  L    
Sbjct: 5   GYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYEL---- 60

Query: 125 WSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
              Q+S       K      +     + Q
Sbjct: 61  ---QHSDKPVGTKKLTKSFGWETLDSFMQ 86

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 45.7 bits (108), Expect = 1e-06
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 7/89 (7%)

Query: 65  GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKM 124
           G  GL+N G TC+M++ +Q+L   + L +       E    S S   +L   F  L    
Sbjct: 174 GYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYEL---- 229

Query: 125 WSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
              Q+S       K      +     + Q
Sbjct: 230 ---QHSDKPVGTKKLTKSFGWETLDSFMQ 255

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	154
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	99.88
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	99.86
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	99.85
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	99.85
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	99.84
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	99.82
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	99.82
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	99.78
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	99.77
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.7
2vhf_A	374	Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki	99.58
1qmy_A	167	Protease, leader protease; hydrolase, sulfhydryl p	83.64

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}

Probab=99.88  E-value=1.3e-22  Score=162.76  Aligned_cols=94  Identities=37%  Similarity=0.714  Sum_probs=82.2

Q ss_pred             ccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhcc---CCCchhHHHHHHHHHHHHHHcCCCCccChHHH
Q psy7178          61 CAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLK---SSSACSSLVDEFALLVRKMWSGQYSIVHPSDF  137 (154)
Q Consensus        61 ~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~---~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~  137 (154)
                      ...+|++||.|+||||||||+||||+|+|+|+++|+...+....+   ..+....++.+|+.|++.||.++...++|..|
T Consensus         3 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~   82 (367)
T 2y6e_A            3 HIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMF   82 (367)
T ss_dssp             -CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHH
T ss_pred             CCCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHH
Confidence            356789999999999999999999999999999999876654332   22334689999999999999998889999999


Q ss_pred             HHHHHhhCCCCCCCCCC
Q psy7178         138 KQILGVHYPQFKDYRQV  154 (154)
Q Consensus       138 ~~~l~~~~~~F~~~~Qq  154 (154)
                      +..+++.++.|.+++||
T Consensus        83 ~~~l~~~~~~f~~~~Qq   99 (367)
T 2y6e_A           83 KTQVGRFAPQFSGYQQQ   99 (367)
T ss_dssp             HHHHHHHCGGGCSSSCC
T ss_pred             HHHHHHhhhhcCCCCCC
Confidence            99999999999999998

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A

Probab=99.86  E-value=4.9e-22  Score=161.49  Aligned_cols=93  Identities=34%  Similarity=0.701  Sum_probs=81.7

Q ss_pred             cCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhcc---CCCchhHHHHHHHHHHHHHHcCCCCccChHHHH
Q psy7178          62 AQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLK---SSSACSSLVDEFALLVRKMWSGQYSIVHPSDFK  138 (154)
Q Consensus        62 ~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~---~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~  138 (154)
                      ..++++||.|+||||||||+||||+|+|+|+++|+...+....+   ..+....+..+|..|++.||.+....++|..|+
T Consensus        58 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~  137 (396)
T 2gfo_A           58 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFK  137 (396)
T ss_dssp             SSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHH
T ss_pred             CCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHHH
Confidence            46789999999999999999999999999999999876544322   223346899999999999999988899999999


Q ss_pred             HHHHhhCCCCCCCCCC
Q psy7178         139 QILGVHYPQFKDYRQV  154 (154)
Q Consensus       139 ~~l~~~~~~F~~~~Qq  154 (154)
                      ..+++.++.|.+++||
T Consensus       138 ~~l~~~~~~f~~~~Qq  153 (396)
T 2gfo_A          138 ITIGKINDQFAGYSQQ  153 (396)
T ss_dssp             HHHHHHCGGGSSSSCC
T ss_pred             HHHHHhchhhcCCCCC
Confidence            9999999999999998

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A

Probab=99.85  E-value=8.1e-22  Score=156.40  Aligned_cols=90  Identities=29%  Similarity=0.589  Sum_probs=75.9

Q ss_pred             cccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCC-CccChHHHHHHHHh
Q psy7178          65 GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQY-SIVHPSDFKQILGV  143 (154)
Q Consensus        65 ~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~-~~i~P~~~~~~l~~  143 (154)
                      |++||.|+||||||||+||+|+|+|+|+++++...+.......+...++..+|+.|+..||.+.. ..++|..|+..+++
T Consensus         2 G~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~~   81 (355)
T 3i3t_A            2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQK   81 (355)
T ss_dssp             -CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHHH
T ss_pred             CCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Confidence            68999999999999999999999999999999866554433223346899999999999998753 78999999999999


Q ss_pred             hCCCCCCCCCC
Q psy7178         144 HYPQFKDYRQV  154 (154)
Q Consensus       144 ~~~~F~~~~Qq  154 (154)
                      ..+.|.+++||
T Consensus        82 ~~~~f~~~~Qq   92 (355)
T 3i3t_A           82 YVPSFSGYSQQ   92 (355)
T ss_dssp             HCGGGCSSCCC
T ss_pred             hChhhCCCCcc
Confidence            99999999998

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A

Probab=99.85  E-value=2.1e-21  Score=153.65  Aligned_cols=94  Identities=38%  Similarity=0.662  Sum_probs=80.4

Q ss_pred             ccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhcc-CCCchhHHHHHHHHHHHHHH-cCCCCccChHHHH
Q psy7178          61 CAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLK-SSSACSSLVDEFALLVRKMW-SGQYSIVHPSDFK  138 (154)
Q Consensus        61 ~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~-~~~~~~~l~~~l~~l~~~~~-~~~~~~i~P~~~~  138 (154)
                      ....|++||.|+||||||||+||+|+|+|+|+++++...+..... ......+++++|+.|+..|| .+....++|..|+
T Consensus         4 k~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~~   83 (348)
T 3nhe_A            4 KSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFK   83 (348)
T ss_dssp             --CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHHHH
T ss_pred             CCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCCCCCccCHHHHH
Confidence            456789999999999999999999999999999999866544332 12245799999999999999 5667899999999


Q ss_pred             HHHHhhCCCCCCCCCC
Q psy7178         139 QILGVHYPQFKDYRQV  154 (154)
Q Consensus       139 ~~l~~~~~~F~~~~Qq  154 (154)
                      ..+++..+.|.+++||
T Consensus        84 ~~l~~~~~~f~~~~Qq   99 (348)
T 3nhe_A           84 TQIQRYAPRFVGYNQQ   99 (348)
T ss_dssp             HHHHHHSGGGSSSCCB
T ss_pred             HHHHHhhhhhCCCCcc
Confidence            9999999999999997

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9

Probab=99.84  E-value=4.8e-21  Score=156.00  Aligned_cols=94  Identities=24%  Similarity=0.388  Sum_probs=79.2

Q ss_pred             ccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCC-----chhHHHHHHHHHHHHHHcCCCCccChH
Q psy7178          61 CAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSS-----ACSSLVDEFALLVRKMWSGQYSIVHPS  135 (154)
Q Consensus        61 ~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~-----~~~~l~~~l~~l~~~~~~~~~~~i~P~  135 (154)
                      ....+++||.|+||||||||+||+|+++|+|+++|+............     ...+++++|+.||..||.+...+++|.
T Consensus        19 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~   98 (415)
T 1vjv_A           19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPV   98 (415)
T ss_dssp             CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCH
T ss_pred             ccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCHH
Confidence            345678999999999999999999999999999999866543221110     146999999999999999887899999


Q ss_pred             HHHHHHHhhCCCCC-------CCCCC
Q psy7178         136 DFKQILGVHYPQFK-------DYRQV  154 (154)
Q Consensus       136 ~~~~~l~~~~~~F~-------~~~Qq  154 (154)
                      .|+..+++.+|.|+       ++.||
T Consensus        99 ~~~~~l~~~~~~f~~~~~~~~~~~Qq  124 (415)
T 1vjv_A           99 VLLNTLRKCYPQFAERDSQGGFYKQQ  124 (415)
T ss_dssp             HHHHHHHHHCGGGGCBC----CBCCC
T ss_pred             HHHHHHHHhCchhhccccCCCCcccc
Confidence            99999999999998       78887

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A

Probab=99.82  E-value=9.5e-21  Score=153.29  Aligned_cols=92  Identities=27%  Similarity=0.402  Sum_probs=76.2

Q ss_pred             cCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhcc-CCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHH
Q psy7178          62 AQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLK-SSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQI  140 (154)
Q Consensus        62 ~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~-~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~  140 (154)
                      ....++||.|+||||||||+||||+|+|+|+++|+........+ ......+++++|+.||..||.+. .+++|..|+..
T Consensus        10 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~-~~v~P~~~~~~   88 (404)
T 2ayn_A           10 AMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTS-SSIPPIILLQF   88 (404)
T ss_dssp             -CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHC-SEECCHHHHHH
T ss_pred             ccCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCC-CcCChHHHHHH
Confidence            35678999999999999999999999999999999865441111 11235799999999999999876 88999999999


Q ss_pred             HHhhCCCCC------CCCCC
Q psy7178         141 LGVHYPQFK------DYRQV  154 (154)
Q Consensus       141 l~~~~~~F~------~~~Qq  154 (154)
                      +++.+|.|+      ++.||
T Consensus        89 l~~~~~~f~~~~~~~~~~Qq  108 (404)
T 2ayn_A           89 LHMAFPQFAEKGEQGQYLQQ  108 (404)
T ss_dssp             HHHHCGGGGCBCTTSCBCCC
T ss_pred             HHHhCchhhccccCCCcccc
Confidence            999999998      46776

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=99.82  E-value=2.2e-20  Score=164.30  Aligned_cols=103  Identities=24%  Similarity=0.382  Sum_probs=81.0

Q ss_pred             ccCCCCcCCccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchh-ccCCCchhHHHHHHHHHHHHHHcCC--
Q psy7178          52 SEDNDVSDNCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDS-LKSSSACSSLVDEFALLVRKMWSGQ--  128 (154)
Q Consensus        52 ~~~~~~~~~~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~-~~~~~~~~~l~~~l~~l~~~~~~~~--  128 (154)
                      .++|....+.+.+|++||.|+||||||||+||+|+|+|+|+++|+....... ........++.++|++|+..||++.  
T Consensus       330 ~~~g~~l~p~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s  409 (854)
T 3ihp_A          330 QESGVPLKPLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYS  409 (854)
T ss_dssp             --------CCCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC--
T ss_pred             cccCcccccccCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhccccc
Confidence            3566667788899999999999999999999999999999999986543221 1222345789999999999999754  


Q ss_pred             ------------------CCccChHHHHHHHHhhCCCCCCCCCC
Q psy7178         129 ------------------YSIVHPSDFKQILGVHYPQFKDYRQV  154 (154)
Q Consensus       129 ------------------~~~i~P~~~~~~l~~~~~~F~~~~Qq  154 (154)
                                        ...++|..|+..+++.++.|.+++||
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQ  453 (854)
T 3ihp_A          410 KPVPESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQ  453 (854)
T ss_dssp             -------------------CCBCCHHHHHHHTTTCTTTTSSSCC
T ss_pred             cccccccccccccccccCCCccChHHHHHHHhhhcccccccccc
Confidence                              34899999999999999999999998

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A

Probab=99.78  E-value=3.6e-19  Score=147.24  Aligned_cols=95  Identities=20%  Similarity=0.283  Sum_probs=76.0

Q ss_pred             CccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCC---------C
Q psy7178          60 NCAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQY---------S  130 (154)
Q Consensus        60 ~~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~---------~  130 (154)
                      ....+|++||.|+||||||||+||+|+|+|+|+++++...+...........++.++|..++..||....         .
T Consensus       135 ~~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~  214 (476)
T 3mhs_A          135 MERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTS  214 (476)
T ss_dssp             GGGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------C
T ss_pred             ccCCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhccccccccccccc
Confidence            3467899999999999999999999999999999999866654443333457899999999999997432         2


Q ss_pred             ccChHHHH---HHHHhhCCCCCCCCCC
Q psy7178         131 IVHPSDFK---QILGVHYPQFKDYRQV  154 (154)
Q Consensus       131 ~i~P~~~~---~~l~~~~~~F~~~~Qq  154 (154)
                      .+.|..++   ..+++.++.|.+++||
T Consensus       215 ~~~~~~~~~~l~~~~~~~~~f~~~~Qq  241 (476)
T 3mhs_A          215 TNRQTGFIYLLTCAWKINQNLAGYSQQ  241 (476)
T ss_dssp             CCSCHHHHHHHHHHHHHCGGGSSSSCE
T ss_pred             ccCcchHHHHHHHHHHhccccCCCCCc
Confidence            45666555   4556899999999997

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A

Probab=99.77  E-value=6.7e-19  Score=140.88  Aligned_cols=85  Identities=19%  Similarity=0.327  Sum_probs=70.8

Q ss_pred             CCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHHHH
Q psy7178          63 QRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQILG  142 (154)
Q Consensus        63 ~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~l~  142 (154)
                      ..|++||.|+||||||||+||||+|+|+|+++++.......    ....++.++|+.||..|+.+. .++.|..|+..++
T Consensus         3 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~~----~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~~~~   77 (353)
T 1nb8_A            3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGD----DSSKSVPLALQRVFYELQHSD-KPVGTKKLTKSFG   77 (353)
T ss_dssp             CSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTTS----CTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHHHHT
T ss_pred             CCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCCC----cccccHHHHHHHHHHHHhhcC-CCCCCHHHHhhcC
Confidence            46889999999999999999999999999999976532211    123578899999999999876 5789999998875


Q ss_pred             hhCCCCCCCCCC
Q psy7178         143 VHYPQFKDYRQV  154 (154)
Q Consensus       143 ~~~~~F~~~~Qq  154 (154)
                        .+.|.++.||
T Consensus        78 --~~~~~~~~Qq   87 (353)
T 1nb8_A           78 --WETLDSFMQH   87 (353)
T ss_dssp             --CCBTTTTTTS
T ss_pred             --CCCCCcccch
Confidence              3789999997

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.70  E-value=1.3e-17  Score=139.60  Aligned_cols=87  Identities=18%  Similarity=0.307  Sum_probs=69.4

Q ss_pred             ccCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHH
Q psy7178          61 CAQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQI  140 (154)
Q Consensus        61 ~~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~  140 (154)
                      ....|++||.|+||||||||+||||+|+|+|+++++.......    ....++..+|+.||..|+.+. .++.|..|+..
T Consensus       170 ~~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~~----~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~~  244 (522)
T 2f1z_A          170 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGD----DSSKSVPLALQRVFYELQHSD-KPVGTKKLTKS  244 (522)
T ss_dssp             TTTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCSS----CTTTCHHHHHHHHHHHHHHCS-SCBCCTTHHHH
T ss_pred             cccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccCC----cccchHHHHHHHHHHHHhcCC-CccCcHHHHhh
Confidence            4467899999999999999999999999999999976532211    123578899999999999876 67899999877


Q ss_pred             HHhhCCCCCCCCCC
Q psy7178         141 LGVHYPQFKDYRQV  154 (154)
Q Consensus       141 l~~~~~~F~~~~Qq  154 (154)
                      ++  .+.|.++.||
T Consensus       245 ~~--~~~~~~~~Qq  256 (522)
T 2f1z_A          245 FG--WETLDSFMQH  256 (522)
T ss_dssp             TC--CCTTTSSTTS
T ss_pred             cC--CccCCCcccc
Confidence            64  3789999987

>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}

Probab=99.58  E-value=5.8e-16  Score=123.91  Aligned_cols=82  Identities=12%  Similarity=0.082  Sum_probs=68.0

Q ss_pred             CcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHH-HHHHHHHHcCCCCccChHHHHHHHH
Q psy7178          64 RGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEF-ALLVRKMWSGQYSIVHPSDFKQILG  142 (154)
Q Consensus        64 ~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l-~~l~~~~~~~~~~~i~P~~~~~~l~  142 (154)
                      ..++||.|+||||||||+||||+.+|++.+.|+........  ......++.+| +.|+..|.+   ..+.|..|+..|+
T Consensus         7 g~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~--~~~~~~l~~~L~r~i~~~Lrk---~~~~P~~~l~~LR   81 (374)
T 2vhf_A            7 GKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKND--VEYYSETQELLRTEIVNPLRI---YGYVCATKIMKLR   81 (374)
T ss_dssp             EESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTS--CTTHHHHHHHHHHTTHHHHHH---TSEECHHHHHHHH
T ss_pred             CCCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCc--chhHHHHHHHHHHHHHHHHhh---cCCCcHHHHHHHH
Confidence            45799999999999999999999999999999987544322  12234688899 789999986   6799999999999


Q ss_pred             hhCCCCCC
Q psy7178         143 VHYPQFKD  150 (154)
Q Consensus       143 ~~~~~F~~  150 (154)
                      +..|+|+.
T Consensus        82 ~~~pQfae   89 (374)
T 2vhf_A           82 KILEKVEA   89 (374)
T ss_dssp             HHHHHHC-
T ss_pred             HHhHHHhc
Confidence            99998875

>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R

Probab=83.64  E-value=0.67  Score=32.12  Aligned_cols=24  Identities=13%  Similarity=0.106  Sum_probs=20.3

Q ss_pred             CcccccccCCcchHHHHHHHHHhc
Q psy7178          64 RGVCGLRNLGNTCFMSAGIQSLVA   87 (154)
Q Consensus        64 ~~~~GL~NlGNTCy~NSvLQ~L~~   87 (154)
                      ..+.|+-|--++|++|++||....
T Consensus        11 k~fys~pN~hdncWLNtilQLfry   34 (167)
T 1qmy_A           11 KTFYSRPNNHDNAWLNAILQLFRY   34 (167)
T ss_dssp             EECCCCCCSSSCHHHHHHHHHHHH
T ss_pred             cccccCCCCCcchHHHHHHHHHHH
Confidence            456789999999999999998644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	154
d2gfoa1	348	d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h	6e-18
d2hd5a1	336	d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy	1e-16
d2ayna1	383	d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy	8e-16
d1vjva_	397	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	4e-15
d1nbfa_	347	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	3e-12

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.7 bits (187), Expect = 6e-18
 Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 3/93 (3%)

Query: 64  RGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSS---LVDEFALL 120
             + GLRNLGNTC+M++ +Q L  A  L +YF     +D +  S+       + +EF ++
Sbjct: 13  PALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGII 72

Query: 121 VRKMWSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
           ++ +W+GQY  + P DFK  +G    QF  Y Q
Sbjct: 73  MKALWTGQYRYISPKDFKITIGKINDQFAGYSQ 105

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (177), Expect = 1e-16
 Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 65  GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSAC-SSLVDEFALLVRK 123
           G+ GLRNLGNTCFM++ +Q L     L +Y   +     L   S   ++LV+EFA L++ 
Sbjct: 2   GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQT 61

Query: 124 MWSGQYSIVH-PSDFKQILGVHYPQFKDYRQV 154
           +W+   + V  PS+FK  +  + P+F  Y Q 
Sbjct: 62  IWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQ 93

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (172), Expect = 8e-16
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 67  CGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACS-SLVDEFALLVRKMW 125
           CGL NLGNTC+M+A +Q + +   L +     +         A +  +      L   M 
Sbjct: 5   CGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMD 64

Query: 126 SGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
               SI  P    Q L + +PQF +  +
Sbjct: 65  KTSSSI-PPIILLQFLHMAFPQFAEKGE 91

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.0 bits (167), Expect = 4e-15
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 67  CGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACS-----SLVDEFALLV 121
            G +N+GNTC+++A +Q+L   + L +   N +    + +S A        +V E     
Sbjct: 7   VGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCF 66

Query: 122 RKMWSGQYSIVHPSDFKQILGVHYPQFKD 150
             + +  +  V P      L   YPQF +
Sbjct: 67  ENLQNKSFKSVLPVVLLNTLRKCYPQFAE 95

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (146), Expect = 3e-12
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 4/89 (4%)

Query: 65  GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKM 124
           G  GL+N G TC+M++ +Q+L   + L +       E       +  S+      +  ++
Sbjct: 5   GYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE----GDDSSKSVPLALQRVFYEL 60

Query: 125 WSGQYSIVHPSDFKQILGVHYPQFKDYRQ 153
                 +      K         F  +  
Sbjct: 61  QHSDKPVGTKKLTKSFGWETLDSFMQHDV 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	154
d2gfoa1	348	Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho	99.81
d1vjva_	397	Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y	99.8
d2hd5a1	336	Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum	99.78
d1nbfa_	347	Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU	99.74
d2ayna1	383	Ubiquitin carboxyl-terminal hydrolase 14 {Human (H	99.74
d1qmya_	156	FMDV leader protease {Foot-and-mouth disease virus	90.46

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.3e-20  Score=145.97  Aligned_cols=93  Identities=34%  Similarity=0.701  Sum_probs=81.6

Q ss_pred             cCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhcc---CCCchhHHHHHHHHHHHHHHcCCCCccChHHHH
Q psy7178          62 AQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLK---SSSACSSLVDEFALLVRKMWSGQYSIVHPSDFK  138 (154)
Q Consensus        62 ~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~---~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~  138 (154)
                      .++|++||.|+||||||||+||+|+++|+|+++|++..+.....   ..+....+..+|+.|++.|+.+....++|..|.
T Consensus        11 ~~~g~vGL~N~GNtCYlNSvLQ~L~~ip~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~~~~~~   90 (348)
T d2gfoa1          11 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFK   90 (348)
T ss_dssp             SSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHH
T ss_pred             CCCCeECCccCCchhHHHHHHHHHHcCHHHHHHHHhccccccccccccccchHHHHHHHHHHHHHHHhCCCCcccccccc
Confidence            37889999999999999999999999999999998766544322   123346899999999999999988999999999


Q ss_pred             HHHHhhCCCCCCCCCC
Q psy7178         139 QILGVHYPQFKDYRQV  154 (154)
Q Consensus       139 ~~l~~~~~~F~~~~Qq  154 (154)
                      ..+++.++.|.+++||
T Consensus        91 ~~~~~~~~~~~~~~qq  106 (348)
T d2gfoa1          91 ITIGKINDQFAGYSQQ  106 (348)
T ss_dssp             HHHHHHCGGGSSSSCC
T ss_pred             ccccccCccccCcccC
Confidence            9999999999999997

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=3.7e-20  Score=144.94  Aligned_cols=90  Identities=26%  Similarity=0.415  Sum_probs=73.4

Q ss_pred             cccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCC-----CchhHHHHHHHHHHHHHHcCCCCccChHHHHH
Q psy7178          65 GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSS-----SACSSLVDEFALLVRKMWSGQYSIVHPSDFKQ  139 (154)
Q Consensus        65 ~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~-----~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~  139 (154)
                      -++||.|+||||||||+||||+++|+|+++|+...........     .....++.+|++||..||.+....++|..|+.
T Consensus         5 ~p~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~~~   84 (397)
T d1vjva_           5 LPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPVVLLN   84 (397)
T ss_dssp             CCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCHHHHH
T ss_pred             CCCCCCCCCccHHHHHHHHHHHcCHHHHHHHHhCCcccccccccccccchHHHHHHHHHHHHHHHHhCCCCccCHHHHHH
Confidence            3589999999999999999999999999999886654332211     12347899999999999999888999999999


Q ss_pred             HHHhhCCCC-------CCCCCC
Q psy7178         140 ILGVHYPQF-------KDYRQV  154 (154)
Q Consensus       140 ~l~~~~~~F-------~~~~Qq  154 (154)
                      .+++..++|       .++.||
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~Qq  106 (397)
T d1vjva_          85 TLRKCYPQFAERDSQGGFYKQQ  106 (397)
T ss_dssp             HHHHHCGGGGCBC----CBCCC
T ss_pred             HHHHHhhhhccccccccccccc
Confidence            999998887       456676

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1e-19  Score=139.71  Aligned_cols=90  Identities=39%  Similarity=0.690  Sum_probs=76.2

Q ss_pred             cccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccC-CCchhHHHHHHHHHHHHHHcCC-CCccChHHHHHHHH
Q psy7178          65 GVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKS-SSACSSLVDEFALLVRKMWSGQ-YSIVHPSDFKQILG  142 (154)
Q Consensus        65 ~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~-~~~~~~l~~~l~~l~~~~~~~~-~~~i~P~~~~~~l~  142 (154)
                      |++||.|+||||||||+||+|+++|+||++++...+...... .....++..+|..|++.|+... ...++|..++..++
T Consensus         2 g~~GL~N~GNtCYlNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~i~p~~~~~~~~   81 (336)
T d2hd5a1           2 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQ   81 (336)
T ss_dssp             CCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTHHHHC---CCSSCCHHHHHHHHHHHHHHTSCTTCEECCHHHHHHHH
T ss_pred             CccCCcCCCcchHHHHHHHHHHcCHHHHHHHHhcchhhhcccCCChhHHHHHHHHHHHHHHHhCCCCCCCCchhhhcccc
Confidence            789999999999999999999999999999987655433321 2234689999999999999764 46799999999999


Q ss_pred             hhCCCCCCCCCC
Q psy7178         143 VHYPQFKDYRQV  154 (154)
Q Consensus       143 ~~~~~F~~~~Qq  154 (154)
                      ..++.|..+.||
T Consensus        82 ~~~~~~~~~~q~   93 (336)
T d2hd5a1          82 RYAPRFVGYNQQ   93 (336)
T ss_dssp             HHCGGGSSCCCB
T ss_pred             cccccccCcccc
Confidence            999999999987

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.4e-18  Score=136.13  Aligned_cols=86  Identities=19%  Similarity=0.304  Sum_probs=70.5

Q ss_pred             cCCcccccccCCcchHHHHHHHHHhcchHHHHHHhccccchhccCCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHHH
Q psy7178          62 AQRGVCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDSLKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQIL  141 (154)
Q Consensus        62 ~~~~~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~l  141 (154)
                      +.+|++||.|+||||||||+||+|+++|+|+++++........    ...++..+|+.+|..|+.+. .++.|..++..+
T Consensus         2 ~~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~~~~----~~~~~~~~l~~lf~~l~~~~-~~~~~~~~~~~~   76 (347)
T d1nbfa_           2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDD----SSKSVPLALQRVFYELQHSD-KPVGTKKLTKSF   76 (347)
T ss_dssp             CSSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCTTCC----TTTCHHHHHHHHHHHHHHCS-SCBCCHHHHHHT
T ss_pred             CCCCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCccCCc----ccchHHHHHHHHHHHHhcCC-CCcChHHHHHhh
Confidence            3578999999999999999999999999999999876544322    23678999999999999876 578999998877


Q ss_pred             HhhCCCCCCCCCC
Q psy7178         142 GVHYPQFKDYRQV  154 (154)
Q Consensus       142 ~~~~~~F~~~~Qq  154 (154)
                      .  ...|..+.||
T Consensus        77 ~--~~~~~~~~qq   87 (347)
T d1nbfa_          77 G--WETLDSFMQH   87 (347)
T ss_dssp             T--CCGGGGGSCB
T ss_pred             c--hhhcchHHHH
Confidence            4  3457777776

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.3e-18  Score=136.38  Aligned_cols=84  Identities=26%  Similarity=0.423  Sum_probs=67.9

Q ss_pred             ccccccCCcchHHHHHHHHHhcchHHHHHHhccccchh-ccCCCchhHHHHHHHHHHHHHHcCCCCccChHHHHHHHHhh
Q psy7178          66 VCGLRNLGNTCFMSAGIQSLVAASALVEYFTNKSEEDS-LKSSSACSSLVDEFALLVRKMWSGQYSIVHPSDFKQILGVH  144 (154)
Q Consensus        66 ~~GL~NlGNTCy~NSvLQ~L~~~p~f~~~l~~~~~~~~-~~~~~~~~~l~~~l~~l~~~~~~~~~~~i~P~~~~~~l~~~  144 (154)
                      ++||.|+||||||||+||+|+++|+|+++|........ .........+.++|+.||..|+... ..+.|..++..++..
T Consensus         4 P~GL~N~GNtCY~NSvLQ~L~~ip~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~-~~~~p~~~~~~l~~~   82 (383)
T d2ayna1           4 PCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTS-SSIPPIILLQFLHMA   82 (383)
T ss_dssp             CCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHC-SEECCHHHHHHHHHH
T ss_pred             CcCcCCCCchhHHHHHHHHHHccHHHHHHHHhhhhhccCCCccccHHHHHHHHHHHHHHHhcCC-CccCHHHHHHHHHHH
Confidence            48999999999999999999999999999987654322 1222345689999999999999865 779999999999998


Q ss_pred             CCCCCC
Q psy7178         145 YPQFKD  150 (154)
Q Consensus       145 ~~~F~~  150 (154)
                      .+.|..
T Consensus        83 ~~~~~~   88 (383)
T d2ayna1          83 FPQFAE   88 (383)
T ss_dssp             CGGGGC
T ss_pred             hHhhcc
Confidence            876643

>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: FMDV leader protease
domain: FMDV leader protease
species: Foot-and-mouth disease virus [TaxId: 12110]

Probab=90.46  E-value=0.062  Score=35.27  Aligned_cols=24  Identities=17%  Similarity=0.069  Sum_probs=19.6

Q ss_pred             CCcccccccCCcchHHHHHHHHHhc
Q psy7178          63 QRGVCGLRNLGNTCFMSAGIQSLVA   87 (154)
Q Consensus        63 ~~~~~GL~NlGNTCy~NSvLQ~L~~   87 (154)
                      .....+..|..| |++|++||....
T Consensus        11 k~f~s~pnnhdN-cWLN~ilQLfry   34 (156)
T d1qmya_          11 KTFYSRPNNHDN-AWLNAILQLFRY   34 (156)
T ss_dssp             EECCCCCCSSSC-HHHHHHHHHHHH
T ss_pred             ceeecCCCcccc-hHHHHHHHHHHH
Confidence            345678899999 999999998644