Psyllid ID: psy7197

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
MYHSLPLCSQSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLTAFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFIHLLPKLLVMRRPQYDRNKRDMDPSQHQSTCKVHGTPTRPPGDLPLDDIESEPLDPLPPPIPPLPPMKKVSHHWHLCPELHKAIAGVRFIADHTKTAVNDTKVKPLEVERSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQAPTLYDDRVPIDVRISEIASTTAKPVIASTL
ccccccEEEEEEEEccccccccccccccEEEEcccccccccEEEEEcccccccccEEEEEEEEcccEEEEEcccEEEEEcEEEcEEEcccccEEEEEEEcccccccEEEEEEccccccccEEEEEcccccccccccEEEEEccEEEEEEEccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHEEEEEEEEEEccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEcccccccccccccccc
ccccEEEEEEEEcccccEEcHHHccccEEEEccccHcccccEEEEEcccccEEEEEEEEEEEEEccEEEEccccEEEccccEEEEEEccccccEEEEEcEEEEcccEEEEEEEcccccccEEEEcEcHHHccccccEEEEEcccccccEEccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHEccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEccccccccccccHHHHHHHHHHccHEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccc
myhslplcsqswydykltwdpkeyggvemlhvpsdhiwrpdivlynnadgnfeVTLATKAtlnytgrvewkppaiykssceidveyfpfdeqtcvmkfgswtydgfqvdlrhldeekgtnvvDIGVDLTAFYTSVEwdilevpavrnekfytccdepylditfnITMRRKTLFYTVNLIIPCMGISFLTILVFYlpsdsgekvSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFFLLLAeiipptslvvpLLGKFVLFTMILDTFSICVTVVVLNihfrspqthvmspwvKKVFIHLLPKLLvmrrpqydrnkrdmdpsqhqstckvhgtptrppgdlplddiesepldplpppipplppmkkvshhwhlcPELHKAIAGVRFIAdhtktavndtkvkpleverslchgwdynspliipspamvLDRLFLWIFTLAVLIGSAgiilqaptlyddrvpidVRISEiasttakpviastl
myhslplcsqswYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATlnytgrvewkppaiYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLTAFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRspqthvmspwvKKVFIHLLPKLLVMRRPQYDrnkrdmdpsqhqstckvhgtptrpPGDLPLDDIESEPLDPLPPPIPPLPPMKKVSHHWHLCPELHKAIAGVRFIADHTktavndtkvkpLEVERSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQAPTLYDDRVPIDVRIseiasttakpviastl
MYHSLPLCSQSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLTAFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKvslsisillsltvfflllAEIIPPtslvvslsisillsltvfflllAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFIHLLPKLLVMRRPQYDRNKRDMDPSQHQSTCKVHGTPTRPPGdlplddiesepldplpppipplppMKKVSHHWHLCPELHKAIAGVRFIADHTKTAVNDTKVKPLEVERSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQAPTLYDDRVPIDVRISEIASTTAKPVIASTL
****LPLCSQSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLTAFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFIHLLPKLLVMR**********************************************************VSHHWHLCPELHKAIAGVRFIADHTKTAVNDTKVKPLEVERSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQAPTLYDDRVPIDVRISEIA************
MYHSLPLCSQSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLTAFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFIHLLPKLLVMRRPQ*************************PPGDLPLDDIESE***************KKVSHHWHLCPELHKAIAGVRFIADHTKTAVND**VK*****RSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQAPTLYDDRVPIDVRISEIA*****P******
MYHSLPLCSQSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLTAFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFIHLLPKLLVMRRPQYDR******************TPTRPPGDLPLDDIESEPLDPLPPPIPPLPPMKKVSHHWHLCPELHKAIAGVRFIADHTKTAVNDTKVKPLEVERSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQAPTLYDDRVPIDVRISEIASTTAKPVIASTL
MYHSLPLCSQSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLTAFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFIHLLPKLLVMRRPQ************************************************************HLCPELHKAIAGVRFIADHTKTAVNDTKVKPLEVERSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQAPTLYDDRVPIDVRISEIASTTAKPV*****
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MYHSLPLCSQSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLTAFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFIHLLPKLLVMRRPQYDRNKRDMDPSQHQSTCKVHGTPTRPPGDLPLDDIESEPLDPLPPPIPPLPPMKKVSHHWHLCPELHKAIAGVRFIADHTKTAVNDTKVKPLEVERSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQAPTLYDDRVPIDVRISEIASTTAKPVIASTL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query488 2.2.26 [Sep-21-2011]
P91766516 Acetylcholine receptor su N/A N/A 0.854 0.808 0.684 1e-177
P25162519 Acetylcholine receptor su no N/A 0.852 0.801 0.541 1e-135
P09478567 Acetylcholine receptor su no N/A 0.868 0.747 0.502 1e-133
P17644576 Acetylcholine receptor su no N/A 0.885 0.75 0.458 1e-118
P23414557 Acetylcholine receptor su N/A N/A 0.577 0.506 0.606 1e-110
Q9N587502 Acetylcholine receptor su yes N/A 0.803 0.780 0.473 1e-106
Q23022511 Acetylcholine receptor su no N/A 0.844 0.806 0.444 1e-101
Q8R4G9499 Neuronal acetylcholine re yes N/A 0.819 0.801 0.422 7e-97
P04757499 Neuronal acetylcholine re yes N/A 0.819 0.801 0.418 8e-97
P32297505 Neuronal acetylcholine re yes N/A 0.807 0.780 0.429 2e-96
>sp|P91766|ACH1_MANSE Acetylcholine receptor subunit alpha-like OS=Manduca sexta GN=ARA1 PE=2 SV=1 Back     alignment and function desciption
 Score =  622 bits (1603), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 334/488 (68%), Positives = 363/488 (74%), Gaps = 71/488 (14%)

Query: 9   SQSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRV 68
            QSWYDYKL+W+P+EYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRV
Sbjct: 78  EQSWYDYKLSWEPREYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRV 137

Query: 69  EWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDL 128
           EW+PPAIYKSSCEIDVEYFPFD+QTCVMKFGSWTYDGFQVDLRH+DE +GTNVV++GVDL
Sbjct: 138 EWRPPAIYKSSCEIDVEYFPFDQQTCVMKFGSWTYDGFQVDLRHIDEVRGTNVVELGVDL 197

Query: 129 TAFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFL 188
           + FYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFL
Sbjct: 198 SEFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFL 257

Query: 189 TILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFFLLL 248
           T+LVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPP                      
Sbjct: 258 TVLVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPP---------------------- 295

Query: 249 AEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFIHLL 308
                 TSLVVPLLGKFVLFTMILDTFSICVTVVVLN+HFRSPQTH MSPWV++VFIH+L
Sbjct: 296 ------TSLVVPLLGKFVLFTMILDTFSICVTVVVLNVHFRSPQTHTMSPWVRRVFIHVL 349

Query: 309 PKLLVMRRPQYDRNKRDMDPSQHQSTCKVHGTPTRPPGDLPLDDIESEP----------- 357
           P+LLVMRRP Y      +DP + +    V G      G+  L D E  P           
Sbjct: 350 PRLLVMRRPHY-----RLDPHRSRFAGLVTGA-----GETTLWD-EGSPGVPAPPRPPPC 398

Query: 358 ----LDPLPPPIPPLPPMKKVSHHWHLCPELHKAIAGVRFIADHTKTAVNDTKVKPLEVE 413
                          P +      WH CPELHKAI G+ +IAD T+     T+VK     
Sbjct: 399 APPLAPCAACAPAEAPALCDALRRWHRCPELHKAIDGINYIADQTRKEEESTRVK----- 453

Query: 414 RSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQAPTLYDDRVPIDVRIS 473
                 W Y         AMVLDR FLWIFTLAV++GSAGIILQAPTLYD+R PIDVR+S
Sbjct: 454 ----EDWKY--------VAMVLDRPFLWIFTLAVVVGSAGIILQAPTLYDERAPIDVRLS 501

Query: 474 EIASTTAK 481
           EIA T AK
Sbjct: 502 EIAYTAAK 509
After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.
Manduca sexta (taxid: 7130)
>sp|P25162|ACH4_DROME Acetylcholine receptor subunit beta-like 2 OS=Drosophila melanogaster GN=nAcRbeta-96A PE=2 SV=3 Back     alignment and function description
>sp|P09478|ACH1_DROME Acetylcholine receptor subunit alpha-like 1 OS=Drosophila melanogaster GN=nAcRalpha-96Aa PE=2 SV=2 Back     alignment and function description
>sp|P17644|ACH2_DROME Acetylcholine receptor subunit alpha-like 2 OS=Drosophila melanogaster GN=nAcRalpha-96Ab PE=2 SV=1 Back     alignment and function description
>sp|P23414|ACH1_SCHGR Acetylcholine receptor subunit alpha-L1 OS=Schistocerca gregaria PE=2 SV=1 Back     alignment and function description
>sp|Q9N587|ACH6_CAEEL Acetylcholine receptor subunit alpha-type unc-63 OS=Caenorhabditis elegans GN=unc-63 PE=1 SV=2 Back     alignment and function description
>sp|Q23022|ACH5_CAEEL Acetylcholine receptor subunit alpha-type unc-38 OS=Caenorhabditis elegans GN=unc-38 PE=2 SV=1 Back     alignment and function description
>sp|Q8R4G9|ACHA3_MOUSE Neuronal acetylcholine receptor subunit alpha-3 OS=Mus musculus GN=Chrna3 PE=2 SV=1 Back     alignment and function description
>sp|P04757|ACHA3_RAT Neuronal acetylcholine receptor subunit alpha-3 OS=Rattus norvegicus GN=Chrna3 PE=2 SV=1 Back     alignment and function description
>sp|P32297|ACHA3_HUMAN Neuronal acetylcholine receptor subunit alpha-3 OS=Homo sapiens GN=CHRNA3 PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query488
340722356554 PREDICTED: acetylcholine receptor subuni 0.862 0.759 0.666 0.0
350424536554 PREDICTED: acetylcholine receptor subuni 0.862 0.759 0.662 0.0
307179215548 Acetylcholine receptor subunit alpha-lik 0.870 0.775 0.666 0.0
383859780554 PREDICTED: acetylcholine receptor subuni 0.887 0.781 0.687 0.0
166851806551 nicotinic acetylcholine receptor alpha 3 0.891 0.789 0.678 0.0
118601178566 nicotinic acetylcholine receptor alpha3 0.862 0.743 0.649 0.0
307193184577 Acetylcholine receptor subunit alpha-lik 0.872 0.738 0.660 0.0
383859782567 PREDICTED: acetylcholine receptor subuni 0.887 0.763 0.670 0.0
59889738569 nicotinic acetylcholine receptor, alpha3 0.889 0.762 0.645 1e-179
157367289509 nicotinic acetylcholine receptor subunit 0.866 0.831 0.701 1e-179
>gi|340722356|ref|XP_003399573.1| PREDICTED: acetylcholine receptor subunit alpha-like [Bombus terrestris] Back     alignment and taxonomy information
 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/536 (66%), Positives = 386/536 (72%), Gaps = 115/536 (21%)

Query: 9   SQSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRV 68
            QSWYDYKL WDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRV
Sbjct: 78  EQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRV 137

Query: 69  EWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDL 128
           EWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRH+DE +G+NVVDIGVDL
Sbjct: 138 EWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHIDEIRGSNVVDIGVDL 197

Query: 129 TAFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFL 188
           + FYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFL
Sbjct: 198 SEFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFL 257

Query: 189 TILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFFLLL 248
           T+LVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPP                      
Sbjct: 258 TVLVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPP---------------------- 295

Query: 249 AEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFIHLL 308
                 TSLVVPLLGKFVLFTMILDTFSICVTVVVLN+HFRSPQTHVM+PWV++VFIH+L
Sbjct: 296 ------TSLVVPLLGKFVLFTMILDTFSICVTVVVLNVHFRSPQTHVMAPWVRRVFIHVL 349

Query: 309 PKLLVMRRPQYDRNKRDMDPSQHQ------------------------------------ 332
           P+LLVMRRPQY  +KR M     Q                                    
Sbjct: 350 PRLLVMRRPQYQIDKRTMGAHHGQRVMVRTCNGLELQDPSLFVETSASELVESSVLFPSL 409

Query: 333 -----------------STCKVHGTP---TRPPGDLPLDDIESEPLDPLPPPIPPLPPMK 372
                            S C++HG+P     PP  LP +    E +D L   +       
Sbjct: 410 DSRDELHPRELEAVNLGSACRIHGSPATTAAPPPQLPTE----ESVDALCNTL------- 458

Query: 373 KVSHHWHLCPELHKAIAGVRFIADHTKTAVNDTKVKPLEVERSLCHGWDYNSPLIIPSPA 432
              HHWH CPEL+KAI G+RFIADHTK   + T+VK           W Y         A
Sbjct: 459 ---HHWHHCPELYKAIEGIRFIADHTKREEDSTRVK---------EDWKY--------VA 498

Query: 433 MVLDRLFLWIFTLAVLIGSAGIILQAPTLYDDRVPIDVRISEIASTTAKPVIASTL 488
           MVLDRLFLWIFTLAV++G+AGIILQAPTLYDDR+PIDVR+SEIASTTAKP I ++L
Sbjct: 499 MVLDRLFLWIFTLAVVVGTAGIILQAPTLYDDRIPIDVRLSEIASTTAKPHIVTSL 554

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350424536|ref|XP_003493827.1| PREDICTED: acetylcholine receptor subunit alpha-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|307179215|gb|EFN67627.1| Acetylcholine receptor subunit alpha-like [Camponotus floridanus] Back     alignment and taxonomy information
>gi|383859780|ref|XP_003705370.1| PREDICTED: acetylcholine receptor subunit alpha-like isoform 1 [Megachile rotundata] Back     alignment and taxonomy information
>gi|166851806|ref|NP_001107770.1| nicotinic acetylcholine receptor alpha 3 subunit precursor [Tribolium castaneum] gi|154810971|gb|ABS86904.1| nicotinic acetylcholine receptor subunit alpha3 [Tribolium castaneum] gi|157783848|gb|ABV72695.1| nicotinic acetylcholine receptor alpha 3 subunit [Tribolium castaneum] gi|221222643|gb|ACM09844.1| nicotinic acetylcholine receptor subunit a3 [Tribolium castaneum] gi|270001242|gb|EEZ97689.1| nicotinic acetylcholine receptor subunit alpha3 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|118601178|ref|NP_001073029.1| nicotinic acetylcholine receptor alpha3 subunit precursor [Apis mellifera] gi|68165862|gb|AAY87891.1| nicotinic acetylcholine receptor alpha3 subunit [Apis mellifera] Back     alignment and taxonomy information
>gi|307193184|gb|EFN76089.1| Acetylcholine receptor subunit alpha-like [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383859782|ref|XP_003705371.1| PREDICTED: acetylcholine receptor subunit alpha-like isoform 2 [Megachile rotundata] Back     alignment and taxonomy information
>gi|59889738|emb|CAI54098.1| nicotinic acetylcholine receptor, alpha3 subunit [Bemisia tabaci] Back     alignment and taxonomy information
>gi|157367289|gb|ABV45513.1| nicotinic acetylcholine receptor subunit alpha 3 [Bombyx mori] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query488
FB|FBgn0015519 795 nAcRalpha-7E "nicotinic Acetyl 0.444 0.272 0.870 3e-169
FB|FBgn0037212568 nAcRalpha-80B "nicotinic Acety 0.444 0.382 0.811 6.7e-150
FB|FBgn0000036567 nAcRalpha-96Aa "nicotinic Acet 0.444 0.382 0.695 8.8e-131
FB|FBgn0004118519 nAcRbeta-96A "nicotinic Acetyl 0.444 0.418 0.682 9.8e-128
FB|FBgn0000039576 nAcRalpha-96Ab "nicotinic Acet 0.438 0.371 0.651 1.9e-115
WB|WBGene00006797502 unc-63 [Caenorhabditis elegans 0.239 0.233 0.672 3e-109
UNIPROTKB|Q19AE6627 CHRNA4 "Neuronal acetylcholine 0.424 0.330 0.518 8.1e-95
UNIPROTKB|E1BHK0614 CHRNA4 "Uncharacterized protei 0.424 0.337 0.523 2.7e-94
UNIPROTKB|F1PFF3618 CHRNA4 "Uncharacterized protei 0.424 0.334 0.523 5.6e-94
UNIPROTKB|Q5IS77627 CHRNA4 "Neuronal acetylcholine 0.424 0.330 0.523 7.1e-94
FB|FBgn0015519 nAcRalpha-7E "nicotinic Acetylcholine Receptor alpha 7E" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1039 (370.8 bits), Expect = 3.0e-169, Sum P(4) = 3.0e-169
 Identities = 189/217 (87%), Positives = 195/217 (89%)

Query:    10 QSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVE 69
             QSWYDYKL W+PKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVE
Sbjct:    80 QSWYDYKLKWEPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVE 139

Query:    70 WKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLT 129
             W+PPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRH+DE  GTNVV++GVDL+
Sbjct:   140 WRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHIDELNGTNVVEVGVDLS 199

Query:   130 AFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLT 189
              FYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLT
Sbjct:   200 EFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLT 259

Query:   190 ILVFYLPSDSGEKXXXXXXXXXXXXXXXXXXAEIIPP 226
             ILVFYLPSDSGEK                  AEIIPP
Sbjct:   260 ILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPP 296
GO:0005892 "acetylcholine-gated channel complex" evidence=ISS
GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS
GO:0006811 "ion transport" evidence=IEA
GO:0045211 "postsynaptic membrane" evidence=IEA
FB|FBgn0037212 nAcRalpha-80B "nicotinic Acetylcholine Receptor alpha 80B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0000036 nAcRalpha-96Aa "nicotinic Acetylcholine Receptor alpha 96Aa" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0004118 nAcRbeta-96A "nicotinic Acetylcholine Receptor beta 96A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0000039 nAcRalpha-96Ab "nicotinic Acetylcholine Receptor alpha 96Ab" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00006797 unc-63 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q19AE6 CHRNA4 "Neuronal acetylcholine receptor subunit alpha-4" [Mustela putorius furo (taxid:9669)] Back     alignment and assigned GO terms
UNIPROTKB|E1BHK0 CHRNA4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PFF3 CHRNA4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q5IS77 CHRNA4 "Neuronal acetylcholine receptor subunit alpha-4" [Pan troglodytes (taxid:9598)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P32297ACHA3_HUMANNo assigned EC number0.42980.80730.7801yesN/A
P04757ACHA3_RATNo assigned EC number0.41820.81960.8016yesN/A
P91766ACH1_MANSENo assigned EC number0.68440.85450.8081N/AN/A
Q9N587ACH6_CAEELNo assigned EC number0.47300.80320.7808yesN/A
P25162ACH4_DROMENo assigned EC number0.54150.85240.8015noN/A
P49581ACHA6_CHICKNo assigned EC number0.42600.78890.7793yesN/A
Q8R4G9ACHA3_MOUSENo assigned EC number0.42250.81960.8016yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query488
pfam02931215 pfam02931, Neur_chan_LBD, Neurotransmitter-gated i 5e-74
TIGR00860459 TIGR00860, LIC, Cation transporter family protein 2e-71
pfam02932228 pfam02932, Neur_chan_memb, Neurotransmitter-gated 5e-64
>gnl|CDD|217293 pfam02931, Neur_chan_LBD, Neurotransmitter-gated ion-channel ligand binding domain Back     alignment and domain information 
 Score =  232 bits (594), Expect = 5e-74
 Identities = 85/163 (52%), Positives = 110/163 (67%), Gaps = 3/163 (1%)

Query: 10  QSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLA-TKATLNYTGRV 68
           Q W D +L WDP++YGG+  L +PSD IW+PDIVLYN ADG  ++T   T   +   G V
Sbjct: 55  QQWTDERLAWDPEDYGGITSLRLPSDKIWKPDIVLYNKADGIHDITTPNTNVRVYPDGTV 114

Query: 69  EWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDL 128
            W PPAIYKSSC +D+ YFPFD+Q C +KFGSWTY+G +VDLR  D+     ++D  +DL
Sbjct: 115 LWSPPAIYKSSCPMDLTYFPFDQQNCSLKFGSWTYNGEEVDLRWKDDTPP--ILDEEIDL 172

Query: 129 TAFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKT 171
           + F  + EWDI++VPA RNE  Y C  E Y D+TF   +RRK 
Sbjct: 173 SDFTENGEWDIVDVPAKRNEYPYGCYSELYPDVTFYFVLRRKP 215

This family is the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. Length = 215
>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein Back     alignment and domain information
>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel transmembrane region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 488
KOG3646|consensus486 100.0
TIGR00860459 LIC Cation transporter family protein. selective w 100.0
KOG3645|consensus449 100.0
KOG3643|consensus459 100.0
KOG3644|consensus457 100.0
KOG3642|consensus466 100.0
PF02931217 Neur_chan_LBD: Neurotransmitter-gated ion-channel 99.97
PF02932237 Neur_chan_memb: Neurotransmitter-gated ion-channel 99.97
PF02932237 Neur_chan_memb: Neurotransmitter-gated ion-channel 83.98
>KOG3646|consensus Back     alignment and domain information 
Probab=100.00  E-value=1e-85  Score=660.26  Aligned_cols=406  Identities=42%  Similarity=0.774  Sum_probs=336.3

Q ss_pred             CCCccceeeeeecceeecCCCCCCCeeEEeeCCCccccccEEEEecCCCceEEEEEeeeeeeeeeeEEecCCeeeeccce
Q psy7197           2 YHSLPLCSQSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCE   81 (488)
Q Consensus         2 ~~~~~~l~~~W~D~rL~Wnp~~y~~i~~i~l~~~~IW~Pdi~l~N~~~~~~~~~~~~~v~V~~~G~V~~~~~~~~~~~C~   81 (488)
                      +.+|.|++++|+|.+|+|||++||||+.+++|.++||+||+.+||+++++|+.+..+++.+++||.|.|.+|.+++++|.
T Consensus        73 l~~naWl~y~W~D~~LrW~pseygnI~dvR~p~~~iWkPDVLLYNSade~FDsTy~tN~Vv~~tG~v~~vPPGIfk~sCk  152 (486)
T KOG3646|consen   73 LSVNAWLQYQWNDYKLRWDPSEYGNITDIRFPGGNIWKPDVLLYNSADEQFDSTYKTNYVVYSTGSVLWVPPGIFKSSCK  152 (486)
T ss_pred             hhhhhhhheeehhhhhccCHHHhCCceeeccCCccccCCceeccccccccCCCcceeeEEEccCCeeeecCCceeeeeeE
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeeccCcceeeeeecceeecceeeeeeeeccccCceeEeeeeeccccccceeeeeEeeceeecccccccCCCCeeee
Q psy7197          82 IDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLTAFYTSVEWDILEVPAVRNEKFYTCCDEPYLDI  161 (488)
Q Consensus        82 ~dl~~FPFD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~eW~l~~~~~~~~~~~y~~~~~~ys~i  161 (488)
                      +|+++||||.|.|.++||||+|++..++|+.....       .++|++.|..||||++.+.++.+.+.+|.||+++|.++
T Consensus       153 iDItwFPFD~Q~C~mKFGSWTY~G~~lDL~~~~~~-------g~~Dls~yi~NGEW~Ll~~pakr~~~~y~cC~epY~dv  225 (486)
T KOG3646|consen  153 IDITWFPFDDQVCYLKFGSWTYAGILLDLRIDDED-------GGIDLSTYIPNGEWDLLGTPAKREEKTYDCCPEPYPDV  225 (486)
T ss_pred             EEEEEecccccEEEEEeeeEEEcceeeeeeecccc-------CCcchhhcccCCceeeccccccceeeecccCCCCccee
Confidence            99999999999999999999999999999876552       24799999999999999999999999999999999999


Q ss_pred             EEEEEeeeeeeeEEEeeeccccccceeeeEEEEccCCCCCeeEEEEeeeeehhhhhhhhcccCCCCcccchhhhhhhhhh
Q psy7197         162 TFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSL  241 (488)
Q Consensus       162 ~~~~~L~R~~~yY~~~lilP~ili~~ls~~sF~Lp~~s~eRv~l~it~LLs~~vf~~~~~~~lP~vsY~t~lD~~~~~~~  241 (488)
                      +|++++|||.+||.+|+++||++++++++++|-+|+|+|||+++++|++|+..+|                         
T Consensus       226 ~F~l~irRRTLyYgfNlIiP~lLIs~m~lLgFtlppD~gEKitL~iTilLsvc~F-------------------------  280 (486)
T KOG3646|consen  226 TFYLHIRRRTLYYGFNLIIPSLLISLMSLLGFTLPPDAGEKITLQITILLSVCFF-------------------------  280 (486)
T ss_pred             EEEEEEEehhhHHHHHHHHHHHHHHHHHHhccccCccccceeeeeeehHHHHHHH-------------------------
Confidence            9999999999999999999999999999999999999999999999999999999                         


Q ss_pred             ceeeeeEEeecCCCeeeeccchhhhhHHhhhcceeeEEEEEEEeeeecCCcccccchhhhhHHhhhccceecccCCCccC
Q psy7197         242 TVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFIHLLPKLLVMRRPQYDR  321 (488)
Q Consensus       242 ~~ill~l~e~lP~tS~~vPli~~f~~~~m~lv~ls~~~tv~vl~~~~r~~~~~~~p~w~r~~~l~~l~~~l~~~~p~~~~  321 (488)
                         +.+++|..|+||+++|+||.||.+||+++++|+++||+|+|+|||+|.+|.|++|.|++|+.|+|++|+|+||....
T Consensus       281 ---L~mvse~~PpTSeaVPllg~fFsc~m~iv~~SvvfTv~vLn~h~R~p~~h~m~p~~r~vfL~wlpwll~M~rP~~~~  357 (486)
T KOG3646|consen  281 ---LTMVSEMTPPTSEAVPLLGAFFSCCMFIVAASVVFTVIVLNLHHRTPETHEMSPWTRSVFLEWLPWLLRMKRPFILR  357 (486)
T ss_pred             ---HHHHHhhcCCccccccHHHHHHHHHHHHHHhhheeEEEEEeeeccCccccccCHHHHHHHHHHHHHHHHhcCCCccc
Confidence               99999999999999999999999999999999999999999999999999999999999999999999999993332


Q ss_pred             CCCCCCccccccccccCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCC-CCC-Ccc-C-CCCCCChhhhhhccceeee
Q psy7197         322 NKRDMDPSQHQSTCKVHGTPTRPPGDLPLD---DIESEPLDPLPPPIPPL-PPM-KKV-S-HHWHLCPELHKAIAGVRFI  394 (488)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~-~~~-~-~~~~~~~~l~~~~~~v~~I  394 (488)
                      ....+...+..+.+...+. .+.......+   .++....+...+..... .+. ++. . .......+++.+.+.++.+
T Consensus       358 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  436 (486)
T KOG3646|consen  358 RTHPSLRMKELDRKLKRGE-HKSAEANGLDGFDLFNQRVSQSLTPRGRTASLPVISEHVSTATQFILKELHLILKELRAI  436 (486)
T ss_pred             cCCchhhhhhhhhhccccc-ccchhhhccccccCCCccccCCCCCcccccCCcccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            2221100000000000000 0000000000   01100000000000000 000 000 0 0001124678888999999


Q ss_pred             cccccccccccccccccccccccCCCcccCCCCCCccchhhhHHHHHHHHHHhhhcccceEEecCccc
Q psy7197         395 ADHTKTAVNDTKVKPLEVERSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQAPTLY  462 (488)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~A~V~Dr~~l~~f~~~~~~~t~~i~l~~~~~~  462 (488)
                      .++++++++++++.+         ||||        +|||+||+||++|+++++++  +|++.+|++.
T Consensus       437 ~~r~~~~~~~~~~~~---------dWkF--------AAmvVDRlCL~~Fs~fiii~--~i~~~~p~l~  485 (486)
T KOG3646|consen  437 LDRMEEDDKEEALQS---------DWKF--------AAMVVDRLCLLAFSVFIVMC--GILLSAPHLV  485 (486)
T ss_pred             HHHhhhhhHHHHHHh---------hhhH--------HHHHHHHHHHHHHHHHHHHH--HHhhcCCccC
Confidence            999999888888888         9999        99999999999999999988  8899999875

>TIGR00860 LIC Cation transporter family protein Back     alignment and domain information
>KOG3645|consensus Back     alignment and domain information
>KOG3643|consensus Back     alignment and domain information
>KOG3644|consensus Back     alignment and domain information
>KOG3642|consensus Back     alignment and domain information
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ] Back     alignment and domain information
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ] Back     alignment and domain information
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query488
4aq5_A461 Gating Movement In Acetylcholine Receptor Analysed 3e-73
2bg9_A370 Refined Structure Of The Nicotinic Acetylcholine Re 3e-65
4aq5_B493 Gating Movement In Acetylcholine Receptor Analysed 1e-64
2bg9_B370 Refined Structure Of The Nicotinic Acetylcholine Re 3e-54
4aq5_C522 Gating Movement In Acetylcholine Receptor Analysed 2e-52
4aq5_E488 Gating Movement In Acetylcholine Receptor Analysed 5e-50
2bg9_C369 Refined Structure Of The Nicotinic Acetylcholine Re 7e-47
2bg9_E370 Refined Structure Of The Nicotinic Acetylcholine Re 1e-44
2qc1_B212 Crystal Structure Of The Extracellular Domain Of Th 2e-41
1oed_A227 Structure Of Acetylcholine Receptor Pore From Elect 7e-25
1oed_B250 Structure Of Acetylcholine Receptor Pore From Elect 5e-22
3sh1_A230 Ac-Achbp Ligand Binding Domain Mutated To Human Alp 2e-21
3sq6_A204 Crystal Structures Of The Ligand Binding Domain Of 1e-20
3sio_A230 Ac-Achbp Ligand Binding Domain (Not Including Beta 4e-20
3t4m_A230 Ac-Achbp Ligand Binding Domain Mutated To Human Alp 6e-20
2ksr_A164 Nmr Structures Of Tm Domain Of The N-Acetylcholine 9e-20
2xnt_A236 Acetylcholine Binding Protein (Achbp) As Template F 6e-19
2byp_A214 Crystal Structure Of Aplysia Californica Achbp In C 9e-19
2xz6_A217 Mtset-Modified Y53c Mutant Of Aplysia Achbp Length 1e-18
2xz5_A217 Mmts-Modified Y53c Mutant Of Aplysia Achbp In Compl 1e-18
2byn_A227 Crystal Structure Of Apo Achbp From Aplysia Califor 1e-18
3pmz_A227 Crystal Structure Of The Complex Of Acetylcholine B 1e-18
3gua_A217 Sulfates Bound In The Vestibule Of Achbp Length = 2 1e-18
2br7_A217 Crystal Structure Of Acetylcholine-Binding Protein 1e-18
2pgz_A230 Crystal Structure Of Cocaine Bound To An Ach-bindin 1e-18
2yme_A205 Crystal Structure Of A Mutant Binding Protein (5htb 1e-18
2x00_D227 Crystal Structure Of A-Achbp In Complex With Gymnod 1e-18
2wn9_A228 Crystal Structure Of Aplysia Achbp In Complex With 1e-18
1oed_C260 Structure Of Acetylcholine Receptor Pore From Elect 2e-18
2ymd_A212 Crystal Structure Of A Mutant Binding Protein (5htb 6e-18
4afg_A230 Capitella Teleta Achbp In Complex With Varenicline 1e-16
2lly_A137 Nmr Structures Of The Transmembrane Domains Of The 5e-16
2lm2_A137 Nmr Structures Of The Transmembrane Domains Of The 3e-15
1oed_E260 Structure Of Acetylcholine Receptor Pore From Elect 1e-13
2bj0_A203 Crystal Structure Of Achbp From Bulinus Truncatus R 9e-10
2zju_A214 Crystal Structure Of Lymnaea Stagnalis Acetylcholin 5e-09
4aoe_A205 Biomphalaria Glabrata Acetylcholine-Binding Protein 5e-09
4aod_A205 Biomphalaria Glabrata Acetylcholine-Binding Protein 5e-09
2lkg_A140 Wsa Major Conformation Length = 140 7e-09
4alx_A229 Crystal Structure Of Ls-Achbp Complexed With The Po 1e-08
1uv6_A210 X-Ray Structure Of Acetylcholine Binding Protein (A 1e-08
1ux2_A212 X-Ray Structure Of Acetylcholine Binding Protein (A 1e-08
1uw6_A211 X-Ray Structure Of Acetylcholine Binding Protein (A 2e-08
1i9b_A217 X-Ray Structure Of Acetylcholine Binding Protein (A 2e-08
2k58_B35 Nmr Structures Of The First Transmembrane Domain Of 2e-08
4ilc_A320 The Glic Pentameric Ligand-gated Ion Channel In Com 9e-05
3tls_A321 The Glic Pentameric Ligand-Gated Ion Channel E19'p 9e-05
3eam_A317 An Open-Pore Structure Of A Bacterial Pentameric Li 1e-04
4il9_A320 The Pentameric Ligand-gated Ion Channel Glic A237f 1e-04
3ei0_A317 Structure Of The E221a Mutant Of The Gloebacter Vio 1e-04
3tlu_A321 The Glic Pentameric Ligand-Gated Ion Channel Loop2- 1e-04
2xq9_A317 Pentameric Ligand Gated Ion Channel Glic Mutant E22 1e-04
3ehz_A317 X-Ray Structure Of The Pentameric Ligand Gated Ion 1e-04
3tlw_A321 The Glic Pentameric Ligand-Gated Ion Channel Loop2- 1e-04
3p4w_A318 Structure Of Desflurane Bound To A Pentameric Ligan 1e-04
3lsv_A317 Structure Of The A237f Mutant Of The Pentameric Lig 1e-04
3tlv_A321 The Glic Pentameric Ligand-Gated Ion Channel Loop2- 1e-04
3uu3_A321 The Glic Pentameric Ligand-Gated Ion Channel Loop2- 1e-04
3tlt_A321 The Glic Pentameric Ligand-Gated Ion Channel H11'f 1e-04
3rhw_A347 C. Elegans Glutamate-Gated Chloride Channel (Glucl) 3e-04
>pdb|4AQ5|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 461 Back     alignment and structure 
Iteration: 1

 Score =  272 bits (696), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 164/458 (35%), Positives = 230/458 (50%), Gaps = 103/458 (22%)
Query: 10  QSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVE 69
           Q W D +L W+P +YGG++ + +PSD +W PD+VLYNNADG+F +   TK  L+YTG++ 
Sbjct: 82  QQWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVHMTKLLLDYTGKIM 141
Query: 70  WKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEKGTNVVDIGVDLT 129
           W PPAI+KS CEI V +FPFD+Q C MK G WTYDG +V +    +           DL+
Sbjct: 142 WTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESDRP---------DLS 192
Query: 130 AFYTSVEWDILEVPAVRNEKFYTCC-DEPYLDITFNITMRRKTLFYTVNLIIPCMGISFL 188
            F  S EW + +    ++  +YTCC D PYLDIT++  M+R  L++ VN+IIPC+  SFL
Sbjct: 193 TFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFL 252
Query: 189 TILVFYLPSDSGEKXXXXXXXXXXXXXXXXXXAEIIPPXXXXXXXXXXXXXXXXXXXXXX 248
           T+LVFYLP+DSGEK                                              
Sbjct: 253 TVLVFYLPTDSGEK----------------------------MTLSISVLLSLTVFLLVI 284
Query: 249 AEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFIHLL 308
            E+IP TS  VPL+GK++LFTMI    SI VTVVV+N H RSP TH M  WV+K+FI+ +
Sbjct: 285 VELIPSTSSAVPLIGKYMLFTMIFVISSIIVTVVVINTHHRSPSTHTMPQWVRKIFINTI 344
Query: 309 PKLL---VMRRPQYDRNKRDM--------DPSQHQSTCKV-HGTPTRPPGXXXXXXXXXX 356
           P ++    M+R   ++ +  +        D S  Q T +V   TP               
Sbjct: 345 PNVMFFSTMKRASKEKQENKIFADDIDISDISGKQVTGEVIFQTP--------------- 389
Query: 357 XXXXXXXXXXXXXXMKKVSHHWHLCPELHKAIAGVRFIADHTKTAVNDTKVKPLEVERSL 416
                         +K         P++  AI GV++IA+H K+          E   + 
Sbjct: 390 -------------LIKN--------PDVKSAIEGVKYIAEHMKSD---------EESSNA 419
Query: 417 CHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGI 454
              W Y         AMV+D + L +F L  +IG+  +
Sbjct: 420 AEEWKY--------VAMVIDHILLCVFMLICIIGTVSV 449
>pdb|2BG9|A Chain A, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution. Length = 370 Back     alignment and structure
>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 493 Back     alignment and structure
>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370 Back     alignment and structure
>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 522 Back     alignment and structure
>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 488 Back     alignment and structure
>pdb|2BG9|C Chain C, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 369 Back     alignment and structure
>pdb|2BG9|E Chain E, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370 Back     alignment and structure
>pdb|2QC1|B Chain B, Crystal Structure Of The Extracellular Domain Of The Nicotinic Acetylcholine Receptor 1 Subunit Bound To Alpha-Bungarotoxin At 1.9 A Resolution Length = 212 Back     alignment and structure
>pdb|1OED|A Chain A, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 227 Back     alignment and structure
>pdb|1OED|B Chain B, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 250 Back     alignment and structure
>pdb|3SH1|A Chain A, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7 Nachr Length = 230 Back     alignment and structure
>pdb|3SQ6|A Chain A, Crystal Structures Of The Ligand Binding Domain Of A Pentameric Alpha7 Nicotinic Receptor Chimera With Its Agonist Epibatidine Length = 204 Back     alignment and structure
>pdb|3SIO|A Chain A, Ac-Achbp Ligand Binding Domain (Not Including Beta 9-10 Linker) Mutated To Human Alpha-7 Nachr Length = 230 Back     alignment and structure
>pdb|3T4M|A Chain A, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7 Nachr (Intermediate) Length = 230 Back     alignment and structure
>pdb|2KSR|A Chain A, Nmr Structures Of Tm Domain Of The N-Acetylcholine Receptor B2 Subunit Length = 164 Back     alignment and structure
>pdb|2XNT|A Chain A, Acetylcholine Binding Protein (Achbp) As Template For Hierarchical In Silico Screening Procedures To Identify Structurally Novel Ligands For The Nicotinic Receptors Length = 236 Back     alignment and structure
>pdb|2BYP|A Chain A, Crystal Structure Of Aplysia Californica Achbp In Complex With Alpha-Conotoxin Imi Length = 214 Back     alignment and structure
>pdb|2XZ6|A Chain A, Mtset-Modified Y53c Mutant Of Aplysia Achbp Length = 217 Back     alignment and structure
>pdb|2XZ5|A Chain A, Mmts-Modified Y53c Mutant Of Aplysia Achbp In Complex With Acetylcholine Length = 217 Back     alignment and structure
>pdb|2BYN|A Chain A, Crystal Structure Of Apo Achbp From Aplysia Californica Length = 227 Back     alignment and structure
>pdb|3PMZ|A Chain A, Crystal Structure Of The Complex Of Acetylcholine Binding Protein And D-Tubocurarine Length = 227 Back     alignment and structure
>pdb|3GUA|A Chain A, Sulfates Bound In The Vestibule Of Achbp Length = 217 Back     alignment and structure
>pdb|2BR7|A Chain A, Crystal Structure Of Acetylcholine-Binding Protein (Achbp) From Aplysia Californica In Complex With Hepes Length = 217 Back     alignment and structure
>pdb|2PGZ|A Chain A, Crystal Structure Of Cocaine Bound To An Ach-binding Protein Length = 230 Back     alignment and structure
>pdb|2YME|A Chain A, Crystal Structure Of A Mutant Binding Protein (5htbp-achbp) In Complex With Granisetron Length = 205 Back     alignment and structure
>pdb|2X00|D Chain D, Crystal Structure Of A-Achbp In Complex With Gymnodimine A Length = 227 Back     alignment and structure
>pdb|2WN9|A Chain A, Crystal Structure Of Aplysia Achbp In Complex With 4-0h- Dmxba Length = 228 Back     alignment and structure
>pdb|1OED|C Chain C, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 260 Back     alignment and structure
>pdb|2YMD|A Chain A, Crystal Structure Of A Mutant Binding Protein (5htbp-achbp) In Complex With Serotonin (5-hydroxytryptamine) Length = 212 Back     alignment and structure
>pdb|4AFG|A Chain A, Capitella Teleta Achbp In Complex With Varenicline Length = 230 Back     alignment and structure
>pdb|2LLY|A Chain A, Nmr Structures Of The Transmembrane Domains Of The Nachr A4 Subunit Length = 137 Back     alignment and structure
>pdb|2LM2|A Chain A, Nmr Structures Of The Transmembrane Domains Of The Achr B2 Subunit Length = 137 Back     alignment and structure
>pdb|1OED|E Chain E, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 260 Back     alignment and structure
>pdb|2BJ0|A Chain A, Crystal Structure Of Achbp From Bulinus Truncatus Revals The Conserved Structural Scaffold And Sites Of Variation In Nicotinic Acetylcholine Receptors Length = 203 Back     alignment and structure
>pdb|2ZJU|A Chain A, Crystal Structure Of Lymnaea Stagnalis Acetylcholine Binding Protein (Ls-Achbp) Complexed With Imidacloprid Length = 214 Back     alignment and structure
>pdb|4AOE|A Chain A, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2 (Bgachbp2) Length = 205 Back     alignment and structure
>pdb|4AOD|A Chain A, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1 (Bgachbp1) Length = 205 Back     alignment and structure
>pdb|2LKG|A Chain A, Wsa Major Conformation Length = 140 Back     alignment and structure
>pdb|4ALX|A Chain A, Crystal Structure Of Ls-Achbp Complexed With The Potent Nachr Antagonist Dhbe Length = 229 Back     alignment and structure
>pdb|1UV6|A Chain A, X-Ray Structure Of Acetylcholine Binding Protein (Achbp) In Complex With Carbamylcholine Length = 210 Back     alignment and structure
>pdb|1UX2|A Chain A, X-Ray Structure Of Acetylcholine Binding Protein (Achbp) Length = 212 Back     alignment and structure
>pdb|1UW6|A Chain A, X-Ray Structure Of Acetylcholine Binding Protein (Achbp) In Complex With Nicotine Length = 211 Back     alignment and structure
>pdb|1I9B|A Chain A, X-Ray Structure Of Acetylcholine Binding Protein (Achbp) Length = 217 Back     alignment and structure
>pdb|2K58|B Chain B, Nmr Structures Of The First Transmembrane Domain Of The Neuronal Acetylcholine Receptor Beta 2 Subunit Length = 35 Back     alignment and structure
>pdb|4ILC|A Chain A, The Glic Pentameric Ligand-gated Ion Channel In Complex With Sulfates Length = 320 Back     alignment and structure
>pdb|3TLS|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant In A Locally-Closed Conformation (Lc2 Subtype) Length = 321 Back     alignment and structure
>pdb|3EAM|A Chain A, An Open-Pore Structure Of A Bacterial Pentameric Ligand- Gated Ion Channel Length = 317 Back     alignment and structure
>pdb|4IL9|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In Complex With Bromide Length = 320 Back     alignment and structure
>pdb|3EI0|A Chain A, Structure Of The E221a Mutant Of The Gloebacter Violaceus Pentameric Ligand Gated Ion Channnel (Glic) Length = 317 Back     alignment and structure
>pdb|3TLU|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24' Oxidized Mutant In A Locally-Closed Conformation (Lc1 Subtype) Length = 321 Back     alignment and structure
>pdb|2XQ9|A Chain A, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In Complex With Tetraethylarsonium (Teas) Length = 317 Back     alignment and structure
>pdb|3EHZ|A Chain A, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel Of Gloebacter Violaceus (Glic) In A Presumptive Open Conformation Length = 317 Back     alignment and structure
>pdb|3TLW|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21' Oxidized Mutant In A Locally-Closed Conformation (Lc2 Subtype) Length = 321 Back     alignment and structure
>pdb|3P4W|A Chain A, Structure Of Desflurane Bound To A Pentameric Ligand-Gated Ion Channel, Glic Length = 318 Back     alignment and structure
>pdb|3LSV|A Chain A, Structure Of The A237f Mutant Of The Pentameric Ligand Gated Channel From Gloeobacter Violaceus Length = 317 Back     alignment and structure
>pdb|3TLV|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22' Oxidized Mutant In A Locally-Closed Conformation (Lc3 Subtype) Length = 321 Back     alignment and structure
>pdb|3UU3|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20' Oxidized Mutant In A Locally-Closed Conformation (Lc1 Subtype) Length = 321 Back     alignment and structure
>pdb|3TLT|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant In A Locally-Closed Conformation (Lc1 Subtype) Length = 321 Back     alignment and structure
>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In Complex With Fab And Ivermectin Length = 347 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query488
4aq5_B493 Acetylcholine receptor beta subunit; membrane prot 1e-149
4aq5_C522 Acetylcholine receptor delta subunit; membrane pro 1e-149
4aq5_E488 Acetylcholine receptor gamma subunit; membrane pro 1e-147
4aq5_A461 Acetylcholine receptor subunit alpha; membrane pro 1e-145
2bg9_A370 Acetylcholine receptor protein, alpha chain; ION c 1e-129
2bg9_A370 Acetylcholine receptor protein, alpha chain; ION c 8e-05
2bg9_B370 Acetylcholine receptor protein, beta chain; ION ch 1e-128
2bg9_B370 Acetylcholine receptor protein, beta chain; ION ch 3e-08
2bg9_E370 Acetylcholine receptor protein, gamma chain; ION c 1e-125
2bg9_E370 Acetylcholine receptor protein, gamma chain; ION c 1e-04
2bg9_C369 Acetylcholine receptor protein, delta chain; ION c 1e-124
2bg9_C369 Acetylcholine receptor protein, delta chain; ION c 4e-04
3tlw_A321 GLR4197 protein, GLIC; Cys-loop receptor family, m 1e-108
2qc1_B212 Acetylcholine receptor subunit alpha; nicotinic ac 8e-85
3rqw_A322 ELIC pentameric ligand gated ION channel from ERW 2e-80
4afh_A230 ACHBP; acetylcholine-binding protein, nicotinic re 1e-79
2wn9_A228 Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl 2e-78
1uw6_A211 Acetylcholine-binding protein; pentamer, IGG fold, 3e-74
3rhw_A347 Avermectin-sensitive glutamate-gated chloride CHA 1e-71
3sq6_A204 ACHBP, neuronal acetylcholine receptor subunit alp 3e-71
2bj0_A203 Acetylcholine-binding protein; 3D-structure, glyco 3e-70
1oed_C260 Acetylcholine receptor protein, delta chain; ION c 1e-60
3igq_A201 GLR4197 protein; plgic Cys-loop, membrane protein, 1e-59
2ksr_A164 Neuronal acetylcholine receptor subunit beta-2; ni 2e-57
1oed_B250 Acetylcholine receptor protein, beta chain; ION ch 2e-57
1oed_A227 Acetylcholine receptor protein, alpha chain; ION c 1e-52
1oed_E260 Acetylcholine receptor protein, gamma chain; ION c 2e-51
2lly_A137 Neuronal acetylcholine receptor subunit alpha-4; t 3e-49
2lkg_A140 Acetylcholine receptor; transmembrane domain, SIGN 1e-40
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Length = 493 Back     alignment and structure
 Score =  435 bits (1119), Expect = e-149
 Identities = 169/461 (36%), Positives = 240/461 (52%), Gaps = 50/461 (10%)

Query: 8   CSQSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 67
            + +W DY+L WDP  Y G++ L +PSD +W+PDIVL NN DG+FE+TL     + +TG 
Sbjct: 80  LNLAWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLMNNNDGSFEITLHVNVLVQHTGA 139

Query: 68  VEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRH-LDEEKGTNVVDIGV 126
           V W P AIY+SSC I V YFPFD Q C M F S+TYD  +V L+H LD +    V +I +
Sbjct: 140 VSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAKGEREVKEIMI 199

Query: 127 DLTAFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGIS 186
           +  AF  + +W I   P+ +N   +   D  Y D+TF + ++RK LFY V  I+PC+ IS
Sbjct: 200 NQDAFTENGQWSIEHKPSRKN---WRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILIS 256

Query: 187 FLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFFL 246
            L ILVFYLP D+GEK                            +SLSIS LL+LTVF L
Sbjct: 257 ILAILVFYLPPDAGEK----------------------------MSLSISALLALTVFLL 288

Query: 247 LLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFIH 306
           LLA+ +P TSL VP++  +++F MIL  FS+ ++VVVLN+H RSP TH M  W++++FI 
Sbjct: 289 LLADKVPETSLSVPIIISYLMFIMILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIE 348

Query: 307 LLPKLLVMRRPQYDRNKRDMDPSQHQSTCKVHGTPTRPPGDLPLDDIESEPLDPLPPPIP 366
            LP  L ++RP    +         ++  +            P+D+       P      
Sbjct: 349 TLPPFLWIQRPVTTPSPDSKPTIISRANDEYFIRKPAGDFVCPVDNARVAV-QPERLFSE 407

Query: 367 PLPPMKKVSHHWHLCPELHKAIAGVRFIADHTKTAVNDTKVKPLEVERSLCHGWDYNSPL 426
               +  ++    L  +L +A+  +++IA+  ++A              L   W Y    
Sbjct: 408 MKWHLNGLTQPVTLPQDLKEAVEAIKYIAEQLESA---------SEFDDLKKDWQY---- 454

Query: 427 IIPSPAMVLDRLFLWIFTLAVLIGSAGIILQAPTLYDDRVP 467
                AMV DRLFL+IF     IG+  I L A        P
Sbjct: 455 ----VAMVADRLFLYIFITMCSIGTFSIFLDASHNVPPDNP 491
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Length = 522 Back     alignment and structure
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488 Back     alignment and structure
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461 Back     alignment and structure
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369 Back     alignment and structure
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369 Back     alignment and structure
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321 Back     alignment and structure
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Length = 212 Back     alignment and structure
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322 Back     alignment and structure
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* Length = 230 Back     alignment and structure
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Length = 228 Back     alignment and structure
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Length = 211 Back     alignment and structure
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347 Back     alignment and structure
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A* Length = 204 Back     alignment and structure
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Length = 203 Back     alignment and structure
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Length = 260 Back     alignment and structure
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Length = 201 Back     alignment and structure
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A Length = 164 Back     alignment and structure
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B Length = 250 Back     alignment and structure
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B Length = 227 Back     alignment and structure
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Length = 260 Back     alignment and structure
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens} Length = 137 Back     alignment and structure
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A Length = 140 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query488
4aq5_C522 Acetylcholine receptor delta subunit; membrane pro 100.0
4aq5_E488 Acetylcholine receptor gamma subunit; membrane pro 100.0
4aq5_A461 Acetylcholine receptor subunit alpha; membrane pro 100.0
4aq5_B493 Acetylcholine receptor beta subunit; membrane prot 100.0
2bg9_B370 Acetylcholine receptor protein, beta chain; ION ch 100.0
2bg9_C369 Acetylcholine receptor protein, delta chain; ION c 100.0
2bg9_E370 Acetylcholine receptor protein, gamma chain; ION c 100.0
2bg9_A370 Acetylcholine receptor protein, alpha chain; ION c 100.0
3tlw_A321 GLR4197 protein, GLIC; Cys-loop receptor family, m 100.0
3rqw_A322 ELIC pentameric ligand gated ION channel from ERW 100.0
3rhw_A347 Avermectin-sensitive glutamate-gated chloride CHA 100.0
1oed_B250 Acetylcholine receptor protein, beta chain; ION ch 100.0
1oed_C260 Acetylcholine receptor protein, delta chain; ION c 100.0
1oed_E260 Acetylcholine receptor protein, gamma chain; ION c 100.0
1oed_A227 Acetylcholine receptor protein, alpha chain; ION c 100.0
2qc1_B212 Acetylcholine receptor subunit alpha; nicotinic ac 100.0
4aoe_A205 Acetylcholine-binding protein type 2; ligand gated 100.0
4aod_A205 Acetylcholine-binding protein type 1; ligand gated 100.0
4afh_A230 ACHBP; acetylcholine-binding protein, nicotinic re 100.0
2wn9_A228 Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl 100.0
3sq6_A204 ACHBP, neuronal acetylcholine receptor subunit alp 100.0
3igq_A201 GLR4197 protein; plgic Cys-loop, membrane protein, 100.0
1uw6_A211 Acetylcholine-binding protein; pentamer, IGG fold, 100.0
2bj0_A203 Acetylcholine-binding protein; 3D-structure, glyco 100.0
2ksr_A164 Neuronal acetylcholine receptor subunit beta-2; ni 99.96
2lkg_A140 Acetylcholine receptor; transmembrane domain, SIGN 99.86
2lly_A137 Neuronal acetylcholine receptor subunit alpha-4; t 99.86
1vry_A76 Glycine receptor alpha-1 chain; second transmembra 98.85
2lly_A137 Neuronal acetylcholine receptor subunit alpha-4; t 97.12
3rqw_A322 ELIC pentameric ligand gated ION channel from ERW 89.92
3rhw_A347 Avermectin-sensitive glutamate-gated chloride CHA 89.28
3tlw_A321 GLR4197 protein, GLIC; Cys-loop receptor family, m 85.41
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Back     alignment and structure
Probab=100.00  E-value=2.7e-84  Score=694.50  Aligned_cols=422  Identities=33%  Similarity=0.574  Sum_probs=299.9

Q ss_pred             CCCccceeeeeecceeecCCCCCCCeeEEeeCCCccccccEEEEecCCCceEEEEEeeeeeeeeeeEEecCCeeeeccce
Q psy7197           2 YHSLPLCSQSWYDYKLTWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCE   81 (488)
Q Consensus         2 ~~~~~~l~~~W~D~rL~Wnp~~y~~i~~i~l~~~~IW~Pdi~l~N~~~~~~~~~~~~~v~V~~~G~V~~~~~~~~~~~C~   81 (488)
                      |++++|++|+|+|+||+|||++|+|++.++++.++||+||++++|+++++++....+++.|++||+|.|.+|++++++|+
T Consensus        73 ~t~~vwl~q~W~D~RL~Wnp~~y~gi~~l~vp~~~IW~PDi~l~N~~d~~~~~~~~~nv~V~~dG~V~~~~~~~~~ssC~  152 (522)
T 4aq5_C           73 LTTNVWMDHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVLQNNNDGQYNVAYFCNVLVRPNGYVTWLPPAIFRSSCP  152 (522)
T ss_dssp             EEEEEEEEEEEECTTCCCCCCCCCTCSCEEECGGGSCCCCEEETTTCSSCCBSCSSCCEEECSSSEEEECCEEEEEECCC
T ss_pred             EEEEEEEeeeEeCcccCCCchhcCCceEEeeccCCEECCcEeccccccCCccccccceEEEeCCccEEEEcccccccccc
Confidence            46789999999999999999999999999999999999999999999998876555788999999999999999999999


Q ss_pred             eeeeeeccCcceeeeeecceeecceeeeeeeecccc---CceeEeeeeeccccccceeeeeEeeceeeccccccc-CCCC
Q psy7197          82 IDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHLDEEK---GTNVVDIGVDLTAFYTSVEWDILEVPAVRNEKFYTC-CDEP  157 (488)
Q Consensus        82 ~dl~~FPFD~Q~C~l~f~S~~y~~~~v~l~~~~~~~---~~~~~~~~~~~~~~~~~~eW~l~~~~~~~~~~~y~~-~~~~  157 (488)
                      ||+++||||+|+|+|+|+||+|+++++++.|..+..   +.......++.++|..+|||++.+.+..++...+.| +++.
T Consensus       153 mdl~~FPfD~Q~C~L~f~S~~Y~~~~v~l~~~~~~~~~~~~~~~~~~~d~~~f~~~gEW~l~~~~~~~~~~~~~~~~~~~  232 (522)
T 4aq5_C          153 INVLYFPFDWQNCSLKFTALNYNANEISMDLMTDTIDGKDYPIEWIIIDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTN  232 (522)
T ss_dssp             CTTTSCSTTCCEEEEEEEETTCCTTTCCEEC---------------CCSTTSCCTTCSEEEEECCEEEEECCCSSCSSCC
T ss_pred             cccCcCCCcCceEeEEEecccccCceeEEEeccCcccccCccceeeeccHHHceecceEEEeeeEEEEEeeeccccCCCC
Confidence            999999999999999999999999999999876531   111222346788999999999999887766554444 4456


Q ss_pred             eeeeEEEEEeeeeeeeEEEeeeccccccceeeeEEEEccCCCCCeeEEEEeeeeehhhhhhhhcccCCCCcccchhhhhh
Q psy7197         158 YLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISI  237 (488)
Q Consensus       158 ys~i~~~~~L~R~~~yY~~~lilP~ili~~ls~~sF~Lp~~s~eRv~l~it~LLs~~vf~~~~~~~lP~vsY~t~lD~~~  237 (488)
                      |++++|+|++||+++||++++++||+++++++|++||+|++++||+++++|+||++++|                     
T Consensus       233 y~~l~~~~~lrR~~~~Yii~l~iP~~liv~Ls~lsF~Lp~d~~eRisLgIT~LLt~tvf---------------------  291 (522)
T 4aq5_C          233 YQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAESGEKMSTAICVLLAQAVF---------------------  291 (522)
T ss_dssp             CEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHHHHHH---------------------
T ss_pred             cceEEEEEEEecccceeeeehhhHHHHHHHHHHheeecCCCcCceEEehHHHHHHHHHH---------------------
Confidence            99999999999999999999999999999999999999999999999999999999999                     


Q ss_pred             hhhhceeeeeEEeecCCCeeeeccchhhhhHHhhhcceeeEEEEEEEeeeecCCcccccchhhhhHHhhhccceeccc-C
Q psy7197         238 LLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFIHLLPKLLVMR-R  316 (488)
Q Consensus       238 ~~~~~~ill~l~e~lP~tS~~vPli~~f~~~~m~lv~ls~~~tv~vl~~~~r~~~~~~~p~w~r~~~l~~l~~~l~~~-~  316 (488)
                             ++.+++.+|++|.++|+||+|+++||+++++|++++++|+|+|||++.+|+||+|+|++|++++|++|||+ |
T Consensus       292 -------l~~v~~~LP~tS~~vPlI~~y~~~~m~lv~lSll~tviVlnl~~r~~~~~~mp~wvr~~fl~~l~~~l~m~~~  364 (522)
T 4aq5_C          292 -------LLLTSQRLPETALAVPLIGKYLMFIMSLVTGVVVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRV  364 (522)
T ss_dssp             -------HHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCC-----------------------
T ss_pred             -------HHHHHhcCCcccCCccHHHHHHHHHHHHHHHHHHHHheEEEEEccCCCCCCCChHHHHHHHHhCchheEEecC
Confidence                   88889999999888999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             CCccCCCCCCCccccccccccCCCCCCC-CCCCCCCC--CCC--CCCCCCCCCCCC---CCCCCccCCCCCCChhhhhhc
Q psy7197         317 PQYDRNKRDMDPSQHQSTCKVHGTPTRP-PGDLPLDD--IES--EPLDPLPPPIPP---LPPMKKVSHHWHLCPELHKAI  388 (488)
Q Consensus       317 p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~  388 (488)
                      |+++...........+..+......... ....+.++  +.+  ++.+........   ..+.+.......+.+++++++
T Consensus       365 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (522)
T 4aq5_C          365 DEIEQPDWQNDLKLRRSSSVGYISKAQEYFNIKSRSELMFEKQSERHGLVPRVTPRIGFGNNNENIAASDQLHDEIKSGI  444 (522)
T ss_dssp             -----------------------------------------------------------------------------CCT
T ss_pred             CCccccccccccccccccccccccccccccccCCccccccccccccCcccccccCccccCCcccccccccccCHHHHHHH
Confidence            8654211110000000000000000000 00001111  000  000100000000   000000111223568999999


Q ss_pred             cceeeecccccccccccccccccccccccCCCcccCCCCCCccchhhhHHHHHHHHHHhhhcccceEEecCccccCCccc
Q psy7197         389 AGVRFIADHTKTAVNDTKVKPLEVERSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQAPTLYDDRVPI  468 (488)
Q Consensus       389 ~~v~~I~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~A~V~Dr~~l~~f~~~~~~~t~~i~l~~~~~~~~~~~~  468 (488)
                      ++++||++|+|++++++++++         ||||        ||||+||+|||+|++++++||++||++|+..+.++.|.
T Consensus       445 ~~v~~ia~~~~~~~~~~~~~~---------dWk~--------va~V~DRl~l~~f~~~~~~gt~~i~~~~~~~~~~~~p~  507 (522)
T 4aq5_C          445 DSTNYIVKQIKEKNAYDEEVG---------NWNL--------VGQTIDRLSMFIITPVMVLGTIFIFVMGNFNRPPAKPF  507 (522)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHH---------HTTC--------CCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCC--
T ss_pred             HHHHHHHHHHhhhhhhhhhcc---------ceeE--------eeeeHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Confidence            999999999999999999999         9999        99999999999999999999999999999988877765
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Back     alignment and structure
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Back     alignment and structure
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Back     alignment and structure
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Back     alignment and structure
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A* Back     alignment and structure
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Back     alignment and structure
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B Back     alignment and structure
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Back     alignment and structure
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Back     alignment and structure
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B Back     alignment and structure
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Back     alignment and structure
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata} Back     alignment and structure
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata} Back     alignment and structure
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A* Back     alignment and structure
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Back     alignment and structure
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A* Back     alignment and structure
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Back     alignment and structure
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Back     alignment and structure
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Back     alignment and structure
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A Back     alignment and structure
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A Back     alignment and structure
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens} Back     alignment and structure
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Back     alignment and structure
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens} Back     alignment and structure
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A* Back     alignment and structure
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Back     alignment and structure
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 488
d1oedb_250 f.36.1.1 (B:) Acetylcholine receptor protein, beta 2e-54
d1oedc_260 f.36.1.1 (C:) Acetylcholine receptor protein, delt 3e-53
d1oede_260 f.36.1.1 (E:) Acetylcholine receptor protein, gamm 3e-50
d1oeda_227 f.36.1.1 (A:) Acetylcholine receptor protein, alph 3e-44
d1uw6a_208 b.96.1.1 (A:) Acetylcholine binding protein (ACHBP 3e-43
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 250 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score =  181 bits (459), Expect = 2e-54
 Identities = 94/288 (32%), Positives = 140/288 (48%), Gaps = 46/288 (15%)

Query: 172 LFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVV 231
           LFY V  IIPC+ IS L ILVFYLP D+GEK+SLSIS LL+                   
Sbjct: 2   LFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLA------------------- 42

Query: 232 SLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSP 291
                    +TVF LLLA+ +P TSL VP++ ++++F MIL  FS+ ++VVVLN+H RSP
Sbjct: 43  ---------VTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSVILSVVVLNLHHRSP 93

Query: 292 QTHVMSPWVKKVFIHLLPKLLVMRRPQYDRNKRDMDPSQHQSTCKVHGTPTRPPGDLPLD 351
            TH M  W++++FI  LP  L ++RP    +         ++  +            P+D
Sbjct: 94  NTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSKPTIISRANDEYFIRKPAGDFVCPVD 153

Query: 352 DIESEPLDPLPPPIPPLPPMKKVSHHWHLCPELHKAIAGVRFIADHTKTAVNDTKVKPLE 411
           +       P          +  ++    L  +L +A+  +++IA+  ++A     +K   
Sbjct: 154 NARVAV-QPERLFSEMKWHLNGLTQPVTLPQDLKEAVEAIKYIAEQLESASEFDDLK--- 209

Query: 412 VERSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQAP 459
                   W Y         AMV DRLFL++F +   IG+  I L A 
Sbjct: 210 ------KDWQY--------VAMVADRLFLYVFFVICSIGTFSIFLDAS 243
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260 Back     information, alignment and structure
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260 Back     information, alignment and structure
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 227 Back     information, alignment and structure
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Length = 208 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query488
d1oedb_250 Acetylcholine receptor protein, beta chain {Marble 100.0
d1oedc_260 Acetylcholine receptor protein, delta chain {Marbl 100.0
d1oede_260 Acetylcholine receptor protein, gamma chain {Marbl 100.0
d1uw6a_208 Acetylcholine binding protein (ACHBP) {Great pond 100.0
d1oeda_227 Acetylcholine receptor protein, alpha chain {Marbl 100.0
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=100.00  E-value=6.8e-45  Score=353.10  Aligned_cols=242  Identities=40%  Similarity=0.696  Sum_probs=120.1

Q ss_pred             eeeEEEeeeccccccceeeeEEEEccCCCCCeeEEEEeeeeehhhhhhhhcccCCCCcccchhhhhhhhhhceeeeeEEe
Q psy7197         171 TLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVSLSISILLSLTVFFLLLAE  250 (488)
Q Consensus       171 ~~yY~~~lilP~ili~~ls~~sF~Lp~~s~eRv~l~it~LLs~~vf~~~~~~~lP~vsY~t~lD~~~~~~~~~ill~l~e  250 (488)
                      |+||++++++||+++++++|++||+|+|+|||+++++|++|++++|                            ++.++|
T Consensus         1 pl~y~~~~~~P~~~i~~l~~~~f~~p~~~~er~~l~it~lL~~~~~----------------------------~~~v~~   52 (250)
T d1oedb_           1 PLFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVF----------------------------LLLLAD   52 (250)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----------------------------HHHHHH
T ss_pred             CcEEEEeHHHHHHHHHHHHHHHheecCCCCCcEEeeHHHHHHHHHH----------------------------HHHHHH
Confidence            6899999999999999999999999999999999999999999999                            899999


Q ss_pred             ecCCCeeeeccchhhhhHHhhhcceeeEEEEEEEeeeecCCcccccchhhhhHHhhhccceecccCCCccCCCCCCCccc
Q psy7197         251 IIPPTSLVVPLLGKFVLFTMILDTFSICVTVVVLNIHFRSPQTHVMSPWVKKVFIHLLPKLLVMRRPQYDRNKRDMDPSQ  330 (488)
Q Consensus       251 ~lP~tS~~vPli~~f~~~~m~lv~ls~~~tv~vl~~~~r~~~~~~~p~w~r~~~l~~l~~~l~~~~p~~~~~~~~~~~~~  330 (488)
                      .+|++|+.+|+||+|+.++|+++++|++.+++|+|+|||++..+++|+|+|++|++++|+++||++|....+........
T Consensus        53 ~~P~~s~~~p~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~P~wvR~lfL~~la~ll~m~~~~~~~~~~~~~~~~  132 (250)
T d1oedb_          53 KVPETSLSVPIIIRYLMFIMILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSKPTII  132 (250)
T ss_dssp             HHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHTC----------------------------------------
T ss_pred             hCCCCcCcchHHHHHHHHHHHHHHHHHHHHHhheeeeccCcccCCcchHHHHHHHHhhhHHhcccCCCCccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999986543322211000


Q ss_pred             cccccccCCCCCCCCCCC--CCCCCC--CCCCCCCCCCCCCCCCCCccCCCCCCChhhhhhccceeeecccccccccccc
Q psy7197         331 HQSTCKVHGTPTRPPGDL--PLDDIE--SEPLDPLPPPIPPLPPMKKVSHHWHLCPELHKAIAGVRFIADHTKTAVNDTK  406 (488)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~I~~~~~~~~~~~~  406 (488)
                      .+...  .....++.++.  +..+..  .++.....+   .....+..........+++++.++++++++++++++++++
T Consensus       133 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~v~~i~~~~~~~~~~~~  207 (250)
T d1oedb_         133 SRAND--EYFIRKPAGDFVCPVDNARVAVQPERLFSE---MKWHLNGLTQPVTLPQDLKEAVEAIKYIAEQLESASEFDD  207 (250)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccc--cccccCCCCCCCCCCCccccCCCCcccccc---ccCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHhHHHH
Confidence            00000  00000000000  000000  000000000   0000111112233446789999999999999999999999


Q ss_pred             cccccccccccCCCcccCCCCCCccchhhhHHHHHHHHHHhhhcccceEEecCccc
Q psy7197         407 VKPLEVERSLCHGWDYNSPLIIPSPAMVLDRLFLWIFTLAVLIGSAGIILQAPTLY  462 (488)
Q Consensus       407 ~~~~~~~~~~~~~W~~~~~~~~~~~A~V~Dr~~l~~f~~~~~~~t~~i~l~~~~~~  462 (488)
                      +++         ||++        +|+|+||+|||+|+++++++|++||++||+.+
T Consensus       208 ~~~---------EW~~--------vA~VlDRlfl~lF~l~~vi~t~~i~l~ap~~~  246 (250)
T d1oedb_         208 LKK---------DWQY--------VAMVADRLFLYVFFVICSIGTFSIFLDASHNV  246 (250)
T ss_dssp             -------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHH---------HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence            999         9999        99999999999999999999999999999875
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Back     information, alignment and structure
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure